Citrus Sinensis ID: 024606

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-----
MFSCPRKRMSSIPGDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF
ccccccccccccccHHHHHHHHHcccccEEEEcccccccEEEEEEEccccHHHHHHHHHHcccccEEEEEEEEccccccccHHHHHHHHccccEEEEcccccHHHHHHHHHHHcccEEEEEccccccccHHHHHHHHHHHHHccccccccccccccccHHHHHHHcccEEEEccccccccccccHHHHHHHHcccEEEccccccccccccccccccccEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEccccEEEc
ccccccccHHHHHHHHHHHHHHHccccEEEEEcccccccEEEEEEEcccccHHHHHHHHHccccccEEEEEEEcccccccccHHHHHHHccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccEEEEccccccccHHHHHHccccEEEEEcccccccccccHHHHHHHHcccEEEEEEEEcccccccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccEEEEc
mfscprkrmssipgdffKLSKMFNAMRsvvrvpdidpkYKVAVLASKQEHCLVDFLygwqegklpvEITCVisnhdrgpnshVIRFLErhgipyhylcaKENEREEELLELVQNTDFLVLARYmqpvplqkeAYLGYKLLESlsskgsltSYFNMILSGKFLRSYGkdvinihhgllpsfkggkpakQAFDAGVKLIgatshfvteeldagpiIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCelrvlpyemnktvvf
mfscprkrmssipgdFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKsycelrvlpyemnktvvf
MFSCPRKRMSSIPGDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKenereeellelVQNTDFLVLARYMQPVPLQKEAylgyklleslsskgsltsyFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF
**************DFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMN*****
MFS****RMSSIPGDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF
*********SSIPGDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF
*F*CPRKRMSSIPGDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFSCPRKRMSSIPGDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query265 2.2.26 [Sep-21-2011]
O34990300 Formyltetrahydrofolate de yes no 0.849 0.75 0.376 5e-43
Q55135284 Formyltetrahydrofolate de N/A no 0.788 0.735 0.362 3e-36
P0A5T6310 Formyltetrahydrofolate de yes no 0.716 0.612 0.387 9e-35
P0A5T7310 Formyltetrahydrofolate de yes no 0.716 0.612 0.387 9e-35
Q46339286 Formyltetrahydrofolate de N/A no 0.724 0.671 0.381 2e-32
Q03432278 Formyltetrahydrofolate de yes no 0.713 0.679 0.366 1e-30
P0A441280 Formyltetrahydrofolate de yes no 0.845 0.8 0.300 2e-27
P0A440280 Formyltetrahydrofolate de yes no 0.845 0.8 0.300 2e-27
P37051280 Formyltetrahydrofolate de N/A no 0.845 0.8 0.300 2e-27
P218721003 Trifunctional purine bios yes no 0.690 0.182 0.3 2e-14
>sp|O34990|PURU_BACSU Formyltetrahydrofolate deformylase OS=Bacillus subtilis (strain 168) GN=purU PE=3 SV=2 Back     alignment and function desciption
 Score =  174 bits (441), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 102/271 (37%), Positives = 150/271 (55%), Gaps = 46/271 (16%)

Query: 2   FSCP--RKRMSSIPGDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGW 59
           F C   R++ SS+   F  +++ F+   S+    ++    +VA+  SK+ HCL + ++ W
Sbjct: 68  FDCAGIREKKSSLQAAFASVAEKFDMTWSLTLASELK---RVAIFVSKELHCLHELIWEW 124

Query: 60  QEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN---EREEELLELVQ--N 114
           Q G L  EI  VISNH+          +ER  IP+HY+ A ++   E E++ LEL++  +
Sbjct: 125 QTGNLMAEIAVVISNHEEAR-----ELVERLNIPFHYMKANKDIRAEVEKKQLELLEQYD 179

Query: 115 TDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHH 174
            D +VLARYMQ                              IL+  F+ ++   +INIHH
Sbjct: 180 VDVIVLARYMQ------------------------------ILTPDFVSAHPNRIINIHH 209

Query: 175 GLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKS 234
             LP+F G  P K+A++ GVKLIGATSH+VT +LD GPIIEQ +ERV HRDN        
Sbjct: 210 SFLPAFIGANPYKRAYERGVKLIGATSHYVTNDLDEGPIIEQDIERVDHRDNAEALKNIG 269

Query: 235 EDVEKQCLAKAIKSYCELRVLPYEMNKTVVF 265
             +E+  LA+A+K + E RV+ +E NKT+VF
Sbjct: 270 RTIERSVLARAVKWHLEDRVIVHE-NKTIVF 299

Bacillus subtilis (strain 168) (taxid: 224308)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 1EC: 0
>sp|Q55135|PURU_SYNY3 Formyltetrahydrofolate deformylase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=purU PE=3 SV=1 Back     alignment and function description
>sp|P0A5T6|PURU_MYCTU Formyltetrahydrofolate deformylase OS=Mycobacterium tuberculosis GN=purU PE=3 SV=1 Back     alignment and function description
>sp|P0A5T7|PURU_MYCBO Formyltetrahydrofolate deformylase OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=purU PE=3 SV=1 Back     alignment and function description
>sp|Q46339|PURU_CORS1 Formyltetrahydrofolate deformylase OS=Corynebacterium sp. (strain P-1) GN=purU PE=3 SV=1 Back     alignment and function description
>sp|Q03432|PURU_HAEIN Formyltetrahydrofolate deformylase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=purU PE=3 SV=2 Back     alignment and function description
>sp|P0A441|PURU_SHIFL Formyltetrahydrofolate deformylase OS=Shigella flexneri GN=purU PE=3 SV=1 Back     alignment and function description
>sp|P0A440|PURU_ECOL6 Formyltetrahydrofolate deformylase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=purU PE=3 SV=1 Back     alignment and function description
>sp|P37051|PURU_ECOLI Formyltetrahydrofolate deformylase OS=Escherichia coli (strain K12) GN=purU PE=1 SV=1 Back     alignment and function description
>sp|P21872|PUR2_CHICK Trifunctional purine biosynthetic protein adenosine-3 OS=Gallus gallus GN=GART PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query265
359495984329 PREDICTED: formyltetrahydrofolate deform 0.860 0.693 0.721 1e-104
224074167317 formyltetrahydrofolate deformylase [Popu 0.860 0.719 0.709 1e-103
358248700316 uncharacterized protein LOC100780134 [Gl 0.860 0.721 0.709 1e-102
356563338316 PREDICTED: formyltetrahydrofolate deform 0.860 0.721 0.706 1e-102
357502477324 Formyltetrahydrofolate deformylase [Medi 0.860 0.703 0.702 1e-100
388513597322 unknown [Medicago truncatula] 0.860 0.708 0.702 1e-100
217071818324 unknown [Medicago truncatula] 0.860 0.703 0.702 1e-100
388516251225 unknown [Medicago truncatula] 0.833 0.982 0.714 1e-100
224138620317 formyltetrahydrofolate deformylase [Popu 0.860 0.719 0.690 3e-99
449458970326 PREDICTED: formyltetrahydrofolate deform 0.860 0.699 0.690 8e-99
>gi|359495984|ref|XP_003635126.1| PREDICTED: formyltetrahydrofolate deformylase-like [Vitis vinifera] gi|297744389|emb|CBI37363.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 189/262 (72%), Positives = 211/262 (80%), Gaps = 34/262 (12%)

Query: 5   PRKRMSSIPGDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKL 64
           PR +M     DF KLS MFNAM+SVVRVP +DPKYK++VLASKQ+HCLVD L+GWQ+G+L
Sbjct: 101 PRAQMDE---DFLKLSNMFNAMKSVVRVPILDPKYKISVLASKQDHCLVDLLHGWQDGRL 157

Query: 65  PVEITCVISNHDRGPNSHVIRFLERHGIPYHYL-CAKENEREEELLELVQNTDFLVLARY 123
           PV+ITCVISNHDRGPN+HV RFLERHGIPYHYL   KEN+RE E+L+LVQ+TDFLVLARY
Sbjct: 158 PVDITCVISNHDRGPNTHVFRFLERHGIPYHYLHTTKENKREGEILDLVQDTDFLVLARY 217

Query: 124 MQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG 183
           MQ                              ILSG FL+SYGKD+INIHHGLLPSFKGG
Sbjct: 218 MQ------------------------------ILSGNFLKSYGKDIINIHHGLLPSFKGG 247

Query: 184 KPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLA 243
            P+KQAFDAGVKLIGATSHFVTEELDAGPII QMVERV HRDNL++FVQKSE++EKQCL 
Sbjct: 248 NPSKQAFDAGVKLIGATSHFVTEELDAGPIIGQMVERVCHRDNLKSFVQKSENLEKQCLV 307

Query: 244 KAIKSYCELRVLPYEMNKTVVF 265
           KAIKSYCELRVLPYE NKTVVF
Sbjct: 308 KAIKSYCELRVLPYEDNKTVVF 329

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224074167|ref|XP_002304283.1| formyltetrahydrofolate deformylase [Populus trichocarpa] gi|222841715|gb|EEE79262.1| formyltetrahydrofolate deformylase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|358248700|ref|NP_001240181.1| uncharacterized protein LOC100780134 [Glycine max] gi|255636588|gb|ACU18632.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356563338|ref|XP_003549921.1| PREDICTED: formyltetrahydrofolate deformylase-like [Glycine max] Back     alignment and taxonomy information
>gi|357502477|ref|XP_003621527.1| Formyltetrahydrofolate deformylase [Medicago truncatula] gi|355496542|gb|AES77745.1| Formyltetrahydrofolate deformylase [Medicago truncatula] Back     alignment and taxonomy information
>gi|388513597|gb|AFK44860.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|217071818|gb|ACJ84269.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|388516251|gb|AFK46187.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|224138620|ref|XP_002326648.1| formyltetrahydrofolate deformylase [Populus trichocarpa] gi|222833970|gb|EEE72447.1| formyltetrahydrofolate deformylase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449458970|ref|XP_004147219.1| PREDICTED: formyltetrahydrofolate deformylase-like [Cucumis sativus] gi|449504944|ref|XP_004162337.1| PREDICTED: formyltetrahydrofolate deformylase-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query265
TAIR|locus:505006677323 AT5G47435 [Arabidopsis thalian 0.426 0.349 0.858 1.3e-86
TAIR|locus:2130893328 AT4G17360 [Arabidopsis thalian 0.426 0.344 0.823 1.3e-84
UNIPROTKB|G4MX54284 MGG_08008 "Formyltetrahydrofol 0.422 0.394 0.460 5.6e-34
TIGR_CMR|CPS_2482292 CPS_2482 "formyltetrahydrofola 0.422 0.383 0.433 5.6e-34
TIGR_CMR|CPS_4036292 CPS_4036 "formyltetrahydrofola 0.422 0.383 0.433 5.6e-34
TIGR_CMR|CPS_3620292 CPS_3620 "formyltetrahydrofola 0.422 0.383 0.424 1e-32
TIGR_CMR|CJE_0881274 CJE_0881 "formyltetrahydrofola 0.411 0.397 0.472 1.4e-31
ASPGD|ASPL0000054518289 AN0495 [Emericella nidulans (t 0.422 0.387 0.495 3e-31
UNIPROTKB|Q9KQK6277 VC_1992 "Formyltetrahydrofolat 0.407 0.389 0.458 7.7e-31
TIGR_CMR|VC_1992277 VC_1992 "formyltetrahydrofolat 0.407 0.389 0.458 7.7e-31
TAIR|locus:505006677 AT5G47435 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 507 (183.5 bits), Expect = 1.3e-86, Sum P(2) = 1.3e-86
 Identities = 97/113 (85%), Positives = 104/113 (92%)

Query:   153 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP 212
             +  ILSG FL+ YGKDVINIHHGLLPSFKGG PAKQAFDAGVKLIGATSHFVTEELD+GP
Sbjct:   211 YMQILSGNFLKGYGKDVINIHHGLLPSFKGGYPAKQAFDAGVKLIGATSHFVTEELDSGP 270

Query:   213 IIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF 265
             IIEQMVE VSHRDNLR+FVQKSED+EK+CL +AIKSYCELRVLPY  NKTVVF
Sbjct:   271 IIEQMVESVSHRDNLRSFVQKSEDLEKKCLTRAIKSYCELRVLPYGTNKTVVF 323
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0006189 "'de novo' IMP biosynthetic process" evidence=IEA
GO:0008864 "formyltetrahydrofolate deformylase activity" evidence=IEA;ISS
GO:0009058 "biosynthetic process" evidence=IEA;ISS
GO:0009152 "purine ribonucleotide biosynthetic process" evidence=ISS
GO:0016742 "hydroxymethyl-, formyl- and related transferase activity" evidence=IEA;ISS
GO:0009853 "photorespiration" evidence=IMP
GO:0046653 "tetrahydrofolate metabolic process" evidence=IMP
TAIR|locus:2130893 AT4G17360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|G4MX54 MGG_08008 "Formyltetrahydrofolate deformylase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_2482 CPS_2482 "formyltetrahydrofolate deformylase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_4036 CPS_4036 "formyltetrahydrofolate deformylase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_3620 CPS_3620 "formyltetrahydrofolate deformylase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_0881 CJE_0881 "formyltetrahydrofolate deformylase" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
ASPGD|ASPL0000054518 AN0495 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KQK6 VC_1992 "Formyltetrahydrofolate deformylase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_1992 VC_1992 "formyltetrahydrofolate deformylase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.1.100.824
3rd Layer3.5.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.III.1082.1
formyltetrahydrofolate deformylase (EC-2.1.2.2 3.5.1.10) (299 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gdcT1
precursor of carboxylase t-protein 1, glycine decarboxylase complex (EC-2.1.2.10); The glycine [...] (409 aa)
     •• 0.932
gdcT2
RecName- Full=Aminomethyltransferase; EC=2.1.2.10;; The glycine cleavage system catalyzes the d [...] (409 aa)
     •• 0.932
SHMT6
RecName- Full=Serine hydroxymethyltransferase; EC=2.1.2.1;; Interconversion of serine and glyci [...] (472 aa)
     •• 0.913
SHMT1
RecName- Full=Serine hydroxymethyltransferase; EC=2.1.2.1;; Interconversion of serine and glyci [...] (472 aa)
     •• 0.913
SHMT8
serine hydroxymethyltransferase 8 (EC-2.1.2.1); Interconversion of serine and glycine (By simil [...] (530 aa)
     •• 0.913
GART
hypothetical protein (215 aa)
  •  •••0.913
SHMT3
precursor of transferase serine hydroxymethyltransferase 3 (EC-2.1.2.1); Interconversion of ser [...] (516 aa)
     •• 0.912
SHMT2
precursor of transferase serine hydroxymethyltransferase 2 (EC-2.1.2.1); Interconversion of ser [...] (518 aa)
     •• 0.911
SHMT7
precursor of transferase serine hydroxymethyltransferase 7 (EC-2.1.2.1); Interconversion of ser [...] (521 aa)
     •• 0.911
FDH1
SubName- Full=Putative uncharacterized protein; (387 aa)
     •• 0.904

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query265
PLN02828268 PLN02828, PLN02828, formyltetrahydrofolate deformy 1e-159
cd08648196 cd08648, FMT_core_Formyl-FH4-Hydrolase_C, Formylte 1e-104
PRK06027286 PRK06027, purU, formyltetrahydrofolate deformylase 2e-90
COG0788287 COG0788, PurU, Formyltetrahydrofolate hydrolase [N 5e-84
TIGR00655280 TIGR00655, PurU, formyltetrahydrofolate deformylas 2e-69
PRK13011286 PRK13011, PRK13011, formyltetrahydrofolate deformy 3e-68
PRK13010289 PRK13010, purU, formyltetrahydrofolate deformylase 2e-59
cd08645183 cd08645, FMT_core_GART, Phosphoribosylglycinamide 4e-39
COG0299200 COG0299, PurN, Folate-dependent phosphoribosylglyc 8e-35
PRK05647200 PRK05647, purN, phosphoribosylglycinamide formyltr 1e-31
pfam00551181 pfam00551, Formyl_trans_N, Formyl transferase 2e-31
cd08369173 cd08369, FMT_core, Formyltransferase, catalytic co 6e-30
TIGR00639190 TIGR00639, PurN, phosphoribosylglycinamide formylt 2e-26
PLN02331207 PLN02331, PLN02331, phosphoribosylglycinamide form 2e-11
cd08653152 cd08653, FMT_core_like_3, Formyl transferase catal 3e-10
COG0223 307 COG0223, Fmt, Methionyl-tRNA formyltransferase [Tr 4e-09
TIGR00460 313 TIGR00460, fmt, methionyl-tRNA formyltransferase 2e-08
PLN02285 334 PLN02285, PLN02285, methionyl-tRNA formyltransfera 1e-07
cd08644203 cd08644, FMT_core_ArnA_N, ArnA, N-terminal formylt 1e-07
cd08823177 cd08823, FMT_core_like_5, Formyl transferase catal 2e-06
PRK06988 312 PRK06988, PRK06988, putative formyltransferase; Pr 2e-05
PRK08125 660 PRK08125, PRK08125, bifunctional UDP-glucuronic ac 2e-05
cd08646204 cd08646, FMT_core_Met-tRNA-FMT_N, Methionyl-tRNA f 3e-05
PRK00005 309 PRK00005, fmt, methionyl-tRNA formyltransferase; R 4e-05
PRK07579245 PRK07579, PRK07579, hypothetical protein; Provisio 7e-05
cd08651180 cd08651, FMT_core_like_4, Formyl transferase catal 9e-04
cd08820173 cd08820, FMT_core_like_6, Formyl transferase catal 0.004
>gnl|CDD|178422 PLN02828, PLN02828, formyltetrahydrofolate deformylase Back     alignment and domain information 
 Score =  443 bits (1141), Expect = e-159
 Identities = 185/262 (70%), Positives = 211/262 (80%), Gaps = 34/262 (12%)

Query: 5   PRKRMSSIPGDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKL 64
           PR +M     DF ++SK F A++SVVRVP +DPKYK+AVLASKQ+HCL+D L+ WQ+G+L
Sbjct: 40  PRAQMDE---DFQEISKHFKALKSVVRVPGLDPKYKIAVLASKQDHCLIDLLHRWQDGRL 96

Query: 65  PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKENEREEELLELVQNTDFLVLARY 123
           PV+ITCVISNH+RGPN+HV+RFLERHGIPYHYL   KEN+RE+E+LELV+ TDFLVLARY
Sbjct: 97  PVDITCVISNHERGPNTHVMRFLERHGIPYHYLPTTKENKREDEILELVKGTDFLVLARY 156

Query: 124 MQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG 183
           MQ                              ILSG FL+ YGKD+INIHHGLLPSFKGG
Sbjct: 157 MQ------------------------------ILSGNFLKGYGKDIINIHHGLLPSFKGG 186

Query: 184 KPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLA 243
            P+KQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLR+FVQKSE++EKQCLA
Sbjct: 187 NPSKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRSFVQKSENLEKQCLA 246

Query: 244 KAIKSYCELRVLPYEMNKTVVF 265
           KAIKSYCELRVLPY  NKTVVF
Sbjct: 247 KAIKSYCELRVLPYGTNKTVVF 268

Length = 268
>gnl|CDD|187717 cd08648, FMT_core_Formyl-FH4-Hydrolase_C, Formyltetrahydrofolate deformylase (Formyl-FH4 hydrolase), C-terminal hydrolase domain Back     alignment and domain information
>gnl|CDD|235676 PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>gnl|CDD|223859 COG0788, PurU, Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|233074 TIGR00655, PurU, formyltetrahydrofolate deformylase Back     alignment and domain information
>gnl|CDD|237266 PRK13011, PRK13011, formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>gnl|CDD|139334 PRK13010, purU, formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>gnl|CDD|187714 cd08645, FMT_core_GART, Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART) Back     alignment and domain information
>gnl|CDD|223376 COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|235544 PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|144222 pfam00551, Formyl_trans_N, Formyl transferase Back     alignment and domain information
>gnl|CDD|187712 cd08369, FMT_core, Formyltransferase, catalytic core domain Back     alignment and domain information
>gnl|CDD|161973 TIGR00639, PurN, phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent Back     alignment and domain information
>gnl|CDD|177965 PLN02331, PLN02331, phosphoribosylglycinamide formyltransferase Back     alignment and domain information
>gnl|CDD|187721 cd08653, FMT_core_like_3, Formyl transferase catalytic core domain found in a group of proteins with unknown functions Back     alignment and domain information
>gnl|CDD|223301 COG0223, Fmt, Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232983 TIGR00460, fmt, methionyl-tRNA formyltransferase Back     alignment and domain information
>gnl|CDD|215159 PLN02285, PLN02285, methionyl-tRNA formyltransferase Back     alignment and domain information
>gnl|CDD|187713 cd08644, FMT_core_ArnA_N, ArnA, N-terminal formyltransferase domain Back     alignment and domain information
>gnl|CDD|187725 cd08823, FMT_core_like_5, Formyl transferase catalytic core domain found in a group of proteins with unknown functions Back     alignment and domain information
>gnl|CDD|235902 PRK06988, PRK06988, putative formyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|236156 PRK08125, PRK08125, bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated Back     alignment and domain information
>gnl|CDD|187715 cd08646, FMT_core_Met-tRNA-FMT_N, Methionyl-tRNA formyltransferase, N-terminal hydrolase domain Back     alignment and domain information
>gnl|CDD|234567 PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|236058 PRK07579, PRK07579, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|187720 cd08651, FMT_core_like_4, Formyl transferase catalytic core domain found in a group of proteins with unknown functions Back     alignment and domain information
>gnl|CDD|187722 cd08820, FMT_core_like_6, Formyl transferase catalytic core domain found in a group of proteins with unknown functions Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 265
PLN02828268 formyltetrahydrofolate deformylase 100.0
TIGR00655280 PurU formyltetrahydrofolate deformylase. This mode 100.0
PRK13010289 purU formyltetrahydrofolate deformylase; Reviewed 100.0
PRK13011286 formyltetrahydrofolate deformylase; Reviewed 100.0
PRK06027286 purU formyltetrahydrofolate deformylase; Reviewed 100.0
COG0299200 PurN Folate-dependent phosphoribosylglycinamide fo 100.0
PLN02331207 phosphoribosylglycinamide formyltransferase 100.0
TIGR00639190 PurN phosphoribosylglycinamide formyltransferase, 100.0
PRK05647200 purN phosphoribosylglycinamide formyltransferase; 100.0
KOG3076206 consensus 5'-phosphoribosylglycinamide formyltrans 100.0
PLN02285 334 methionyl-tRNA formyltransferase 100.0
COG0788287 PurU Formyltetrahydrofolate hydrolase [Nucleotide 100.0
COG0223 307 Fmt Methionyl-tRNA formyltransferase [Translation, 100.0
PF00551181 Formyl_trans_N: Formyl transferase; InterPro: IPR0 100.0
PRK06988 312 putative formyltransferase; Provisional 100.0
PRK00005 309 fmt methionyl-tRNA formyltransferase; Reviewed 100.0
TIGR00460 313 fmt methionyl-tRNA formyltransferase. The top-scor 100.0
PRK08125 660 bifunctional UDP-glucuronic acid decarboxylase/UDP 100.0
PRK07579245 hypothetical protein; Provisional 100.0
KOG3082 338 consensus Methionyl-tRNA formyltransferase [Transl 99.9
KOG2452 881 consensus Formyltetrahydrofolate dehydrogenase [Nu 99.86
PF00185158 OTCace: Aspartate/ornithine carbamoyltransferase, 95.82
PLN02342348 ornithine carbamoyltransferase 95.03
PRK04284332 ornithine carbamoyltransferase; Provisional 94.52
PRK02255338 putrescine carbamoyltransferase; Provisional 93.52
TIGR00658304 orni_carb_tr ornithine carbamoyltransferase. Most 93.01
PRK00779304 ornithine carbamoyltransferase; Provisional 92.72
COG2102223 Predicted ATPases of PP-loop superfamily [General 92.44
PRK01713334 ornithine carbamoyltransferase; Provisional 92.18
PRK08192338 aspartate carbamoyltransferase; Provisional 91.58
PRK14805302 ornithine carbamoyltransferase; Provisional 91.43
PLN02527306 aspartate carbamoyltransferase 91.21
PRK13814310 pyrB aspartate carbamoyltransferase catalytic subu 91.21
PRK08300302 acetaldehyde dehydrogenase; Validated 91.21
TIGR00670301 asp_carb_tr aspartate carbamoyltransferase. Ornith 90.73
PRK03515336 ornithine carbamoyltransferase subunit I; Provisio 90.16
TIGR01761 343 thiaz-red thiazolinyl imide reductase. This reduct 89.74
TIGR00290223 MJ0570_dom MJ0570-related uncharacterized domain. 89.31
PRK02102331 ornithine carbamoyltransferase; Validated 88.83
PF01902218 ATP_bind_4: ATP-binding region; InterPro: IPR00276 88.75
PRK04523335 N-acetylornithine carbamoyltransferase; Reviewed 88.75
TIGR00289222 conserved hypothetical protein TIGR00289. Homologo 88.75
PF01408120 GFO_IDH_MocA: Oxidoreductase family, NAD-binding R 88.7
TIGR03316357 ygeW probable carbamoyltransferase YgeW. Members o 86.27
TIGR03215285 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati 86.2
PRK13376 525 pyrB bifunctional aspartate carbamoyltransferase c 85.57
PRK12562334 ornithine carbamoyltransferase subunit F; Provisio 84.85
cd01994194 Alpha_ANH_like_IV This is a subfamily of Adenine n 84.71
COG0394139 Wzb Protein-tyrosine-phosphatase [Signal transduct 82.83
PRK10696258 tRNA 2-thiocytidine biosynthesis protein TtcA; Pro 82.2
PRK05447 385 1-deoxy-D-xylulose 5-phosphate reductoisomerase; P 82.03
COG0673 342 MviM Predicted dehydrogenases and related proteins 81.96
PRK14804311 ornithine carbamoyltransferase; Provisional 80.53
>PLN02828 formyltetrahydrofolate deformylase Back     alignment and domain information 
Probab=100.00  E-value=6e-55  Score=398.08  Aligned_cols=226  Identities=80%  Similarity=1.309  Sum_probs=209.2

Q ss_pred             CCCcchhHhhhHhhhccccccccCCCCCCceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHH
Q 024606           10 SSIPGDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLER   89 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~   89 (265)
                      +.+..+|.++++.|.+.+..|++.+.++++|||||+||.||||++|++++++|+++++|++||||+++++++++.++|++
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~riavlvSg~g~nl~~ll~~~~~g~l~~eI~~ViSn~~~~~~a~~~~~A~~  121 (268)
T PLN02828         42 AQMDEDFQEISKHFKALKSVVRVPGLDPKYKIAVLASKQDHCLIDLLHRWQDGRLPVDITCVISNHERGPNTHVMRFLER  121 (268)
T ss_pred             HHHHHHHHHHHHhcCCcceEEEEccCCCCcEEEEEEcCCChhHHHHHHhhhcCCCCceEEEEEeCCCCCCCchHHHHHHH
Confidence            45668999999999864446778888899999999999999999999999999999999999999987778899999999


Q ss_pred             cCCCEEEECCC-CCchHHHHHHHhhCCCEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcCCC
Q 024606           90 HGIPYHYLCAK-ENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKD  168 (265)
Q Consensus        90 ~gIP~~~~~~~-~~~~~~~l~~~l~~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~  168 (265)
                      +|||++.++.+ .+.+++++++.++++|++|+|||||                              ||++++++.++++
T Consensus       122 ~gIP~~~~~~~~~~~~e~~~~~~l~~~DliVLAgym~------------------------------IL~~~~l~~~~~r  171 (268)
T PLN02828        122 HGIPYHYLPTTKENKREDEILELVKGTDFLVLARYMQ------------------------------ILSGNFLKGYGKD  171 (268)
T ss_pred             cCCCEEEeCCCCCCCHHHHHHHHHhcCCEEEEeeehH------------------------------hCCHHHHhhccCC
Confidence            99999987754 2345667788777999999999999                              9999999999999


Q ss_pred             eEEecCCCCCCCCCCcHHHHHHHhCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 024606          169 VINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKS  248 (265)
Q Consensus       169 ~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvH~v~~~~D~G~II~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~ai~~  248 (265)
                      +||+|||+||+|||++|++||+.+|++.+|+|+|+|++++|+||||.|+.++|.++||.++|.+|+.+.+++++.+++++
T Consensus       172 iINIHpSlLP~f~Ga~p~~~Ai~~Gvk~tG~TvH~V~~~lD~GpII~Q~~v~V~~~dt~~~L~~r~~~~E~~~l~~av~~  251 (268)
T PLN02828        172 IINIHHGLLPSFKGGNPSKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRSFVQKSENLEKQCLAKAIKS  251 (268)
T ss_pred             EEEecCccCCCCCCCcHHHHHHHcCCCeEEEEEEEEcCCCCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCeeeecCCceeeC
Q 024606          249 YCELRVLPYEMNKTVVF  265 (265)
Q Consensus       249 i~~g~~~~~~~~k~vv~  265 (265)
                      +.++++..+..||||||
T Consensus       252 ~~~~~~~~~~~~~tvvf  268 (268)
T PLN02828        252 YCELRVLPYGTNKTVVF  268 (268)
T ss_pred             HHhCCeEEcCCCcEEeC
Confidence            99999999744999998

>TIGR00655 PurU formyltetrahydrofolate deformylase Back     alignment and domain information
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>PRK13011 formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism] Back     alignment and domain information
>PLN02331 phosphoribosylglycinamide formyltransferase Back     alignment and domain information
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent Back     alignment and domain information
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed Back     alignment and domain information
>KOG3076 consensus 5'-phosphoribosylglycinamide formyltransferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02285 methionyl-tRNA formyltransferase Back     alignment and domain information
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism] Back     alignment and domain information
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group Back     alignment and domain information
>PRK06988 putative formyltransferase; Provisional Back     alignment and domain information
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed Back     alignment and domain information
>TIGR00460 fmt methionyl-tRNA formyltransferase Back     alignment and domain information
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated Back     alignment and domain information
>PRK07579 hypothetical protein; Provisional Back     alignment and domain information
>KOG3082 consensus Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2452 consensus Formyltetrahydrofolate dehydrogenase [Nucleotide transport and metabolism] Back     alignment and domain information
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2 Back     alignment and domain information
>PLN02342 ornithine carbamoyltransferase Back     alignment and domain information
>PRK04284 ornithine carbamoyltransferase; Provisional Back     alignment and domain information
>PRK02255 putrescine carbamoyltransferase; Provisional Back     alignment and domain information
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase Back     alignment and domain information
>PRK00779 ornithine carbamoyltransferase; Provisional Back     alignment and domain information
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only] Back     alignment and domain information
>PRK01713 ornithine carbamoyltransferase; Provisional Back     alignment and domain information
>PRK08192 aspartate carbamoyltransferase; Provisional Back     alignment and domain information
>PRK14805 ornithine carbamoyltransferase; Provisional Back     alignment and domain information
>PLN02527 aspartate carbamoyltransferase Back     alignment and domain information
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional Back     alignment and domain information
>PRK08300 acetaldehyde dehydrogenase; Validated Back     alignment and domain information
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase Back     alignment and domain information
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional Back     alignment and domain information
>TIGR01761 thiaz-red thiazolinyl imide reductase Back     alignment and domain information
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain Back     alignment and domain information
>PRK02102 ornithine carbamoyltransferase; Validated Back     alignment and domain information
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal Back     alignment and domain information
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed Back     alignment and domain information
>TIGR00289 conserved hypothetical protein TIGR00289 Back     alignment and domain information
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot Back     alignment and domain information
>TIGR03316 ygeW probable carbamoyltransferase YgeW Back     alignment and domain information
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) Back     alignment and domain information
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional Back     alignment and domain information
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional Back     alignment and domain information
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional Back     alignment and domain information
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] Back     alignment and domain information
>PRK14804 ornithine carbamoyltransferase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query265
3o1l_A302 Crystal Structure Of A Formyltetrahydrofolate Defor 7e-39
3obi_A288 Crystal Structure Of A Formyltetrahydrofolate Defor 1e-33
3lou_A292 Crystal Structure Of Formyltetrahydrofolate Deformy 8e-32
3nrb_A287 Crystal Structure Of A Formyltetrahydrofolate Defor 3e-31
3n0v_A286 Crystal Structure Of A Formyltetrahydrofolate Defor 3e-27
3kcq_A215 Crystal Structure Of Phosphoribosylglycinamide Form 1e-14
3p9x_A211 Crystal Structure Of Phosphoribosylglycinamide Form 6e-14
2ywr_A216 Crystal Structure Of Gar Transformylase From Aquife 3e-13
1zly_A203 The Structure Of Human Glycinamide Ribonucleotide T 4e-13
1meo_A209 Human Glycinamide Ribonucleotide Transformylase At 4e-13
1zlx_A203 The Apo Structure Of Human Glycinamide Ribonucleoti 5e-13
1mej_B223 Human Glycinamide Ribonucleotide Transformylase Dom 5e-13
3auf_A229 Crystal Structure Of Glycinamide Ribonucleotide Tra 2e-12
4ds3_A209 Crystal Structure Of Phosphoribosylglycinamide Form 2e-11
3av3_A212 Crystal Structure Of Glycinamide Ribonucleotide Tra 2e-08
1cdd_A212 Structures Of Apo And Complexed Escherichia Coli Gl 3e-08
1c3e_A209 New Insights Into Inhibitor Design From The Crystal 3e-08
1grc_A212 Crystal Structure Of Glycinamide Ribonucleotide Tra 3e-08
2gar_A212 A Ph-dependent Stablization Of An Active Site Loop 3e-08
4iqf_A 317 Crystal Structure Of Methyionyl-trna Formyltransfer 1e-07
3tqr_A215 Structure Of The Phosphoribosylglycinamide Formyltr 1e-07
3da8_A215 Crystal Structure Of Purn From Mycobacterium Tuberc 3e-07
3tqq_A 314 Structure Of The Methionyl-Trna Formyltransferase ( 4e-04
1fmt_A 314 Methionyl-Trnafmet Formyltransferase From Escherich 4e-04
>pdb|3O1L|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase (Pspto_4314) From Pseudomonas Syringae Pv. Tomato Str. Dc3000 At 2.20 A Resolution Length = 302 Back     alignment and structure 
Iteration: 1

 Score =  157 bits (396), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 101/267 (37%), Positives = 132/267 (49%), Gaps = 45/267 (16%)
Query: 8   RMSSIPGDFFKLSKMFNAMRSVV----RVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGK 63
           R  ++P D     + F  +        R+ D   K +V + AS++ HCL D L+ W   +
Sbjct: 71  RADTLPFDLDGFREAFTPIAEEFSXDWRITDSAQKKRVVLXASRESHCLADLLHRWHSDE 130
Query: 64  LPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKXXXXXXXXXXXVQ-----NTDFL 118
           L  +I CVISNH       +   +E H IPY+++               +       D +
Sbjct: 131 LDCDIACVISNH-----QDLRSXVEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQADVV 185
Query: 119 VLARYMQPVPLQKEAXXXXXXXXXXXXXXXXXXXFNMILSGKFLRSYGKDVINIHHGLLP 178
           VLARY Q +P Q                                R Y   VINIHH  LP
Sbjct: 186 VLARYXQILPPQ------------------------------LCREYAHQVINIHHSFLP 215
Query: 179 SFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVE 238
           SF G KP  QA   GVKLIGAT H+VTEELDAGPIIEQ V RVSHRD++   V+   DVE
Sbjct: 216 SFVGAKPYHQASLRGVKLIGATCHYVTEELDAGPIIEQDVVRVSHRDSIENXVRFGRDVE 275
Query: 239 KQCLAKAIKSYCELRVLPYEMNKTVVF 265
           K  LA+ ++++ E RVL ++ NKTVVF
Sbjct: 276 KXVLARGLRAHLEDRVLVHD-NKTVVF 301
>pdb|3OBI|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase (Np_949368) From Rhodopseudomonas Palustris Cga009 At 1.95 A Resolution Length = 288 Back     alignment and structure
>pdb|3LOU|A Chain A, Crystal Structure Of Formyltetrahydrofolate Deformylase (yp_105254.1) From Burkholderia Mallei Atcc 23344 At 1.90 A Resolution Length = 292 Back     alignment and structure
>pdb|3NRB|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase (Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A Resolution Length = 287 Back     alignment and structure
>pdb|3N0V|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase (Pp_0327) From Pseudomonas Putida Kt2440 At 2.25 A Resolution Length = 286 Back     alignment and structure
>pdb|3KCQ|A Chain A, Crystal Structure Of Phosphoribosylglycinamide Formyltransferase From Anaplasma Phagocytophilum Length = 215 Back     alignment and structure
>pdb|3P9X|A Chain A, Crystal Structure Of Phosphoribosylglycinamide Formyltransferase From Bacillus Halodurans Length = 211 Back     alignment and structure
>pdb|2YWR|A Chain A, Crystal Structure Of Gar Transformylase From Aquifex Aeolicus Length = 216 Back     alignment and structure
>pdb|1ZLY|A Chain A, The Structure Of Human Glycinamide Ribonucleotide Transformylase In Complex With Alpha,beta-n- (hydroxyacetyl)-d-ribofuranosylamine And 10-formyl-5,8, Dideazafolate Length = 203 Back     alignment and structure
>pdb|1MEO|A Chain A, Human Glycinamide Ribonucleotide Transformylase At Ph 4.2 Length = 209 Back     alignment and structure
>pdb|1ZLX|A Chain A, The Apo Structure Of Human Glycinamide Ribonucleotide Transformylase Length = 203 Back     alignment and structure
>pdb|1MEJ|B Chain B, Human Glycinamide Ribonucleotide Transformylase Domain At Ph 8.5 Length = 223 Back     alignment and structure
>pdb|3AUF|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide Transformylase 1 From Symbiobacterium Toebii Length = 229 Back     alignment and structure
>pdb|4DS3|A Chain A, Crystal Structure Of Phosphoribosylglycinamide Formyltransferase From Brucella Melitensis Length = 209 Back     alignment and structure
>pdb|3AV3|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide Transformylase 1 From Geobacillus Kaustophilus Length = 212 Back     alignment and structure
>pdb|1CDD|A Chain A, Structures Of Apo And Complexed Escherichia Coli Glycinamide Ribonucleotide Transformylase Length = 212 Back     alignment and structure
>pdb|1C3E|A Chain A, New Insights Into Inhibitor Design From The Crystal Structure And Nmr Studies Of E. Coli Gar Transformylate In Complex With Beta-Gar And 10-Formyl-5,8,10-Trideazafolic Acid. Length = 209 Back     alignment and structure
>pdb|1GRC|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide Transformylase From Escherichia Coli At 3.0 Angstroms Resolution: A Target Enzyme For Chemotherapy Length = 212 Back     alignment and structure
>pdb|2GAR|A Chain A, A Ph-dependent Stablization Of An Active Site Loop Observed From Low And High Ph Crystal Structures Of Mutant Monomeric Glycinamide Ribonucleotide Transformylase Length = 212 Back     alignment and structure
>pdb|4IQF|A Chain A, Crystal Structure Of Methyionyl-trna Formyltransferase From Bacillus Anthracis Length = 317 Back     alignment and structure
>pdb|3TQR|A Chain A, Structure Of The Phosphoribosylglycinamide Formyltransferase (Purn) In Complex With Ches From Coxiella Burnetii Length = 215 Back     alignment and structure
>pdb|3DA8|A Chain A, Crystal Structure Of Purn From Mycobacterium Tuberculosis Length = 215 Back     alignment and structure
>pdb|3TQQ|A Chain A, Structure Of The Methionyl-Trna Formyltransferase (Fmt) From Coxiella Burnetii Length = 314 Back     alignment and structure
>pdb|1FMT|A Chain A, Methionyl-Trnafmet Formyltransferase From Escherichia Coli Length = 314 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query265
3n0v_A286 Formyltetrahydrofolate deformylase; formyl transfe 1e-103
3o1l_A302 Formyltetrahydrofolate deformylase; structural gen 1e-102
3lou_A292 Formyltetrahydrofolate deformylase; structural gen 1e-101
3nrb_A287 Formyltetrahydrofolate deformylase; N-terminal ACT 1e-101
3obi_A288 Formyltetrahydrofolate deformylase; structural gen 1e-101
3kcq_A215 Phosphoribosylglycinamide formyltransferase; struc 1e-38
3auf_A229 Glycinamide ribonucleotide transformylase 1; struc 1e-37
3p9x_A211 Phosphoribosylglycinamide formyltransferase; struc 2e-37
3av3_A212 Phosphoribosylglycinamide formyltransferase; struc 2e-37
1jkx_A212 GART;, phosphoribosylglycinamide formyltransferase 3e-37
4ds3_A209 Phosphoribosylglycinamide formyltransferase; struc 4e-37
2ywr_A216 Phosphoribosylglycinamide formyltransferase; rossm 4e-37
3tqr_A215 Phosphoribosylglycinamide formyltransferase; purin 6e-37
3da8_A215 Probable 5'-phosphoribosylglycinamide formyltransf 6e-37
1meo_A209 Phosophoribosylglycinamide formyltransferase; puri 7e-37
1zgh_A260 Methionyl-tRNA formyltransferase; southeast collab 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1z7e_A 660 Protein aRNA; rossmann fold, OB-like fold, hydrola 4e-05
2bln_A 305 Protein YFBG; transferase, formyltransferase, L-AR 7e-05
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida} Length = 286 Back     alignment and structure
 Score =  299 bits (769), Expect = e-103
 Identities = 79/256 (30%), Positives = 124/256 (48%), Gaps = 44/256 (17%)

Query: 15  DFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 74
              + S+ F        +   + + KV ++ SK +HCL D LY  + G+L +++  V+SN
Sbjct: 70  GLAERSEAFGM---AFELTAPNHRPKVVIMVSKADHCLNDLLYRQRIGQLGMDVVAVVSN 126

Query: 75  HDRGPNSHVIRFLERHGIPYHYL-CAKEN--EREEELLELVQ--NTDFLVLARYMQPVPL 129
           H       +      H IPY++     ++   +E ++L++++    + ++LARYMQ    
Sbjct: 127 HP-----DLEPLAHWHKIPYYHFALDPKDKPGQERKVLQVIEETGAELVILARYMQ---- 177

Query: 130 QKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQA 189
                                     +LS +  R      INIHH LLP FKG KP  QA
Sbjct: 178 --------------------------VLSPELCRRLDGWAINIHHSLLPGFKGAKPYHQA 211

Query: 190 FDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSY 249
           ++ GVK++GAT+H++  +LD GPII Q VE V H       + K  D+E   LA+A+  +
Sbjct: 212 YNKGVKMVGATAHYINNDLDEGPIIAQGVEVVDHSHYPEDLIAKGRDIECLTLARAVGYH 271

Query: 250 CELRVLPYEMNKTVVF 265
            E RV     N+TVV 
Sbjct: 272 IERRVFLNA-NRTVVL 286
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV} Length = 302 Back     alignment and structure
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei} Length = 292 Back     alignment and structure
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida} Length = 287 Back     alignment and structure
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris} Length = 288 Back     alignment and structure
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} Length = 215 Back     alignment and structure
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii} Length = 229 Back     alignment and structure
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans} Length = 211 Back     alignment and structure
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus} Length = 212 Back     alignment and structure
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A* Length = 212 Back     alignment and structure
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV} Length = 209 Back     alignment and structure
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus} Length = 216 Back     alignment and structure
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} Length = 215 Back     alignment and structure
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A* Length = 215 Back     alignment and structure
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A* Length = 209 Back     alignment and structure
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1 c.65.1.1 Length = 260 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Length = 660 Back     alignment and structure
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A Length = 305 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query265
3n0v_A286 Formyltetrahydrofolate deformylase; formyl transfe 100.0
3lou_A292 Formyltetrahydrofolate deformylase; structural gen 100.0
3nrb_A287 Formyltetrahydrofolate deformylase; N-terminal ACT 100.0
3o1l_A302 Formyltetrahydrofolate deformylase; structural gen 100.0
3obi_A288 Formyltetrahydrofolate deformylase; structural gen 100.0
3kcq_A215 Phosphoribosylglycinamide formyltransferase; struc 100.0
3tqr_A215 Phosphoribosylglycinamide formyltransferase; purin 100.0
1jkx_A212 GART;, phosphoribosylglycinamide formyltransferase 100.0
1meo_A209 Phosophoribosylglycinamide formyltransferase; puri 100.0
3p9x_A211 Phosphoribosylglycinamide formyltransferase; struc 100.0
3auf_A229 Glycinamide ribonucleotide transformylase 1; struc 100.0
4ds3_A209 Phosphoribosylglycinamide formyltransferase; struc 100.0
3da8_A215 Probable 5'-phosphoribosylglycinamide formyltransf 100.0
2ywr_A216 Phosphoribosylglycinamide formyltransferase; rossm 100.0
3av3_A212 Phosphoribosylglycinamide formyltransferase; struc 100.0
1fmt_A 314 Methionyl-tRNA FMet formyltransferase; initiator t 100.0
2bln_A 305 Protein YFBG; transferase, formyltransferase, L-AR 100.0
3rfo_A 317 Methionyl-tRNA formyltransferase; structural genom 100.0
3tqq_A 314 Methionyl-tRNA formyltransferase; protein synthesi 100.0
3q0i_A 318 Methionyl-tRNA formyltransferase; structural genom 100.0
2bw0_A 329 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase 100.0
1z7e_A 660 Protein aRNA; rossmann fold, OB-like fold, hydrola 100.0
1zgh_A260 Methionyl-tRNA formyltransferase; southeast collab 99.97
2i6u_A307 Otcase, ornithine carbamoyltransferase; X-RAY crys 95.13
4gmf_A 372 Yersiniabactin biosynthetic protein YBTU; rossmann 95.02
3gd5_A323 Otcase, ornithine carbamoyltransferase; structural 94.63
4ep1_A340 Otcase, ornithine carbamoyltransferase; structural 94.46
1pvv_A315 Otcase, ornithine carbamoyltransferase; dodecamer; 94.19
1vlv_A325 Otcase, ornithine carbamoyltransferase; TM1097, st 94.07
3tpf_A307 Otcase, ornithine carbamoyltransferase; structural 94.05
3grf_A328 Ornithine carbamoyltransferase; ornithine transcar 93.08
3csu_A310 Protein (aspartate carbamoyltransferase); transfer 92.07
1ml4_A308 Aspartate transcarbamoylase; beta pleated sheet, p 91.16
1duv_G333 Octase-1, ornithine transcarbamoylase; enzyme-inhi 90.89
4a8t_A339 Putrescine carbamoyltransferase; trabnsferase PALO 90.86
4f2g_A309 Otcase 1, ornithine carbamoyltransferase 1; struct 90.82
4had_A 350 Probable oxidoreductase protein; structural genomi 90.81
4ekn_B306 Aspartate carbamoyltransferase; atcase, aspartate 90.81
1dxh_A335 Ornithine carbamoyltransferase; transcarbamylase; 90.76
1zq6_A359 Otcase, ornithine carbamoyltransferase; alpha/beta 89.56
4a8p_A355 Putrescine carbamoyltransferase; ornithine agmatin 89.37
3rjz_A237 N-type ATP pyrophosphatase superfamily; structural 89.08
2ef0_A301 Ornithine carbamoyltransferase; TTHA1199, thermus 89.07
2w37_A359 Ornithine carbamoyltransferase, catabolic; transca 89.07
4amu_A365 Ornithine carbamoyltransferase, catabolic; ornithi 88.72
3ip3_A 337 Oxidoreductase, putative; structural genomics, PSI 88.03
3kzn_A359 Aotcase, N-acetylornithine carbamoyltransferase; t 86.91
3sds_A353 Ornithine carbamoyltransferase, mitochondrial; str 86.75
4fb5_A 393 Probable oxidoreductase protein; PSI-biology, nysg 86.73
3q2i_A 354 Dehydrogenase; rossmann fold, UDP-sugar binding, N 86.18
3ohs_X 334 Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d 86.14
3rc1_A 350 Sugar 3-ketoreductase; sugar biosynthesis, TDP bin 85.11
3mz0_A 344 Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; 84.24
3moi_A 387 Probable dehydrogenase; structural genomics, PSI2, 83.19
4gqa_A 412 NAD binding oxidoreductase; structural genomics, P 81.78
3evn_A 329 Oxidoreductase, GFO/IDH/MOCA family; structural ge 81.53
3u3x_A 361 Oxidoreductase; structural genomics, PSI-biology, 81.42
3a06_A 376 1-deoxy-D-xylulose 5-phosphate reductoisomerase; M 81.34
3e9m_A 330 Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, 81.04
2nvw_A 479 Galactose/lactose metabolism regulatory protein GA 80.8
4huj_A220 Uncharacterized protein; PSI-biology, nysgrc, stru 80.68
1zh8_A 340 Oxidoreductase; TM0312, structural genomics, JO ce 80.09
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida} Back     alignment and structure
Probab=100.00  E-value=6.2e-53  Score=387.28  Aligned_cols=219  Identities=36%  Similarity=0.613  Sum_probs=199.1

Q ss_pred             ccCCCcchhHhhhHhhhccccccccCCCCCCceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHH
Q 024606            8 RMSSIPGDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFL   87 (265)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a   87 (265)
                      ..+.+..+|.+++++|++.+   ++.+.++++||+||+||+||||++|++++++|.++++|++||||+++     +..+|
T Consensus        63 ~~~~L~~~f~~la~~l~m~~---~l~~~~~~~ri~vl~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~-----~~~~A  134 (286)
T 3n0v_A           63 DEAGFRAGLAERSEAFGMAF---ELTAPNHRPKVVIMVSKADHCLNDLLYRQRIGQLGMDVVAVVSNHPD-----LEPLA  134 (286)
T ss_dssp             CHHHHHHHHHHHHGGGTCEE---EEECTTCCCEEEEEESSCCHHHHHHHHHHHTTSSCCEEEEEEESSST-----THHHH
T ss_pred             CHHHHHHHHHHHHHHcCCEE---EeecCCCCcEEEEEEeCCCCCHHHHHHHHHCCCCCcEEEEEEeCcHH-----HHHHH
Confidence            34556789999999998754   44467778999999999999999999999999999999999999853     35679


Q ss_pred             HHcCCCEEEECCCCCch---HHHHHHHhh--CCCEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHH
Q 024606           88 ERHGIPYHYLCAKENER---EEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFL  162 (265)
Q Consensus        88 ~~~gIP~~~~~~~~~~~---~~~l~~~l~--~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il  162 (265)
                      +++|||++.++.+...+   ++++.+.++  ++|++|+||||+                              |||++++
T Consensus       135 ~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y~~------------------------------il~~~~l  184 (286)
T 3n0v_A          135 HWHKIPYYHFALDPKDKPGQERKVLQVIEETGAELVILARYMQ------------------------------VLSPELC  184 (286)
T ss_dssp             HHTTCCEEECCCBTTBHHHHHHHHHHHHHHHTCSEEEESSCCS------------------------------CCCHHHH
T ss_pred             HHcCCCEEEeCCCcCCHHHHHHHHHHHHHhcCCCEEEeccccc------------------------------ccCHHHH
Confidence            99999999887543223   457888887  899999999999                              9999999


Q ss_pred             hhcCCCeEEecCCCCCCCCCCcHHHHHHHhCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 024606          163 RSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCL  242 (265)
Q Consensus       163 ~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvH~v~~~~D~G~II~Q~~~~I~~~dt~~~L~~rl~~~~~~ll  242 (265)
                      +.+++++||+|||+||+|||++|++||+.+|++.+|+|+|+|++++|+||||.|+.++|.++||.++|.+|+.+.+++++
T Consensus       185 ~~~~~~~iNiHpSlLP~~rG~~p~~~Ai~~G~~~~G~Tvh~v~~~lD~GpIi~Q~~~~i~~~dt~~~L~~r~~~~e~~~l  264 (286)
T 3n0v_A          185 RRLDGWAINIHHSLLPGFKGAKPYHQAYNKGVKMVGATAHYINNDLDEGPIIAQGVEVVDHSHYPEDLIAKGRDIECLTL  264 (286)
T ss_dssp             HHTTTSEEEEEECSSTTCCCSCHHHHHHHHTCSEEEEEEEECCSSTTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             hhhcCCeEEeccccccCCCCccHHHHHHHcCCCeEEEEEEEEcCCCCCCceeEEEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCeeeecCCceeeC
Q 024606          243 AKAIKSYCELRVLPYEMNKTVVF  265 (265)
Q Consensus       243 ~~ai~~i~~g~~~~~~~~k~vv~  265 (265)
                      +++++++.+|++.... ||||||
T Consensus       265 ~~av~~~~~~~~~~~~-~~~~vf  286 (286)
T 3n0v_A          265 ARAVGYHIERRVFLNA-NRTVVL  286 (286)
T ss_dssp             HHHHHHHHTTCEEEET-TEEEEC
T ss_pred             HHHHHHHHhCCEEEcC-CEEEEC
Confidence            9999999999999875 999998
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei} Back     alignment and structure
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida} Back     alignment and structure
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV} Back     alignment and structure
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris} Back     alignment and structure
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0 Back     alignment and structure
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0 Back     alignment and structure
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A* Back     alignment and structure
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A* Back     alignment and structure
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans} Back     alignment and structure
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii} Back     alignment and structure
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV} Back     alignment and structure
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A* Back     alignment and structure
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus} Back     alignment and structure
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus} Back     alignment and structure
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A Back     alignment and structure
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A Back     alignment and structure
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii} Back     alignment and structure
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae} Back     alignment and structure
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A Back     alignment and structure
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Back     alignment and structure
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1 c.65.1.1 Back     alignment and structure
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A Back     alignment and structure
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* Back     alignment and structure
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus} Back     alignment and structure
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis} Back     alignment and structure
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A Back     alignment and structure
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1 Back     alignment and structure
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp} Back     alignment and structure
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis} Back     alignment and structure
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ... Back     alignment and structure
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1 Back     alignment and structure
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A* Back     alignment and structure
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis} Back     alignment and structure
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} Back     alignment and structure
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} Back     alignment and structure
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A Back     alignment and structure
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A Back     alignment and structure
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A Back     alignment and structure
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A Back     alignment and structure
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus} Back     alignment and structure
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii} Back     alignment and structure
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A Back     alignment and structure
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} Back     alignment and structure
>3kzn_A Aotcase, N-acetylornithine carbamoyltransferase; transcarbamylase, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: KCX AOR; 1.80A {Xanthomonas campestris PV} PDB: 3kzc_A* 3kzm_A* 3kzk_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 3l05_A* 3l02_A* 3m4n_A* 3l06_A* 3l04_A* Back     alignment and structure
>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis} Back     alignment and structure
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} Back     alignment and structure
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* Back     alignment and structure
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X Back     alignment and structure
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* Back     alignment and structure
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* Back     alignment and structure
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} Back     alignment and structure
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} Back     alignment and structure
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} Back     alignment and structure
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} Back     alignment and structure
>3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A* Back     alignment and structure
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} Back     alignment and structure
>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A Back     alignment and structure
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} Back     alignment and structure
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 265
d1meoa_205 c.65.1.1 (A:) Glycinamide ribonucleotide transform 6e-23
d1jkxa_209 c.65.1.1 (A:) Glycinamide ribonucleotide transform 3e-21
d1zgha2164 c.65.1.1 (A:1-164) Methionyl-tRNAfmet formyltransf 2e-06
>d1meoa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Human (Homo sapiens) [TaxId: 9606]} Length = 205 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Glycinamide ribonucleotide transformylase, GART
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.1 bits (225), Expect = 6e-23
 Identities = 56/226 (24%), Positives = 85/226 (37%), Gaps = 28/226 (12%)

Query: 40  KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 99
           +VAVL S     L   +   +E     +I  VISN                    ++   
Sbjct: 2   RVAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLY 61

Query: 100 KENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSG 159
           K     +  +                             +LE  S      + F  ILSG
Sbjct: 62  KNRVEFDSAI---------------------------DLVLEEFSIDIVCLAGFMRILSG 94

Query: 160 KFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVE 219
            F++ +   ++NIH  LLPSFKG    +QA + GV + G T HFV E++DAG II Q   
Sbjct: 95  PFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEDVDAGQIILQEAV 154

Query: 220 RVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF 265
            V   D + T  ++ +  E +    A++      V   E N  + +
Sbjct: 155 PVKRGDTVATLSERVKLAEHKIFPAALQLVASGTVQLGE-NGKICW 199
>d1jkxa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Escherichia coli [TaxId: 562]} Length = 209 Back     information, alignment and structure
>d1zgha2 c.65.1.1 (A:1-164) Methionyl-tRNAfmet formyltransferase {Clostridium thermocellum [TaxId: 1515]} Length = 164 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query265
d1jkxa_209 Glycinamide ribonucleotide transformylase, GART {E 100.0
d1meoa_205 Glycinamide ribonucleotide transformylase, GART {H 100.0
d2bw0a2203 10-formyltetrahydrofolate dehydrogenase domain 1 { 100.0
d1fmta2206 Methionyl-tRNAfmet formyltransferase {Escherichia 100.0
d2blna2203 Polymyxin resistance protein ArnA, N-terminal doma 100.0
d1zgha2164 Methionyl-tRNAfmet formyltransferase {Clostridium 99.95
d1ekxa2160 Aspartate carbamoyltransferase catalytic subunit { 95.21
d1nvmb1157 Acetaldehyde dehydrogenase (acylating) {Pseudomona 94.96
d2d13a1226 Hypothetical protein PH1257 {Archaeon Pyrococcus h 93.89
d1pvva2163 Ornithine transcarbamoylase {Archaeon Pyrococcus f 93.71
d1tuga1310 Aspartate carbamoyltransferase catalytic subunit { 93.11
d1pg5a2153 Aspartate carbamoyltransferase catalytic subunit { 92.88
d1ml4a2157 Aspartate carbamoyltransferase catalytic subunit { 92.84
d1dxha2185 Ornithine transcarbamoylase {Pseudomonas aeruginos 91.73
d2nvwa1237 Galactose/lactose metabolism regulatory protein GA 91.68
d1tlta1164 Virulence factor MviM {Escherichia coli [TaxId: 56 91.64
d1ydwa1184 Probable oxidoreductase At4g09670 {Thale cress (Ar 89.11
d1vlva2161 Ornithine transcarbamoylase {Thermotoga maritima [ 88.11
d1q0qa2151 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E 87.38
d2ahra2152 Pyrroline-5-carboxylate reductase ProC {Streptococ 86.92
d1zh8a1181 Hypothetical protein TM0312 {Thermotoga maritima [ 86.11
d1ni5a1227 tRNA-Ile-lysidine synthetase, TilS, N-terminal dom 85.67
d1otha2170 Ornithine transcarbamoylase {Human (Homo sapiens) 84.71
d1e3ja2170 Ketose reductase (sorbitol dehydrogenase) {Silverl 84.13
d1h6da1221 Glucose-fructose oxidoreductase, N-terminal domain 84.09
d2at2a2151 Aspartate carbamoyltransferase catalytic subunit { 83.92
d1r0ka2150 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z 83.14
d1e3ia2174 Alcohol dehydrogenase {Mouse (Mus musculus), class 83.05
d1f8fa2174 Benzyl alcohol dehydrogenase {Acinetobacter calcoa 82.79
d1lssa_132 Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax 80.52
d1yqga2152 Pyrroline-5-carboxylate reductase ProC {Neisseria 80.34
>d1jkxa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Glycinamide ribonucleotide transformylase, GART
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.6e-46  Score=324.91  Aligned_cols=192  Identities=28%  Similarity=0.419  Sum_probs=176.1

Q ss_pred             ceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCC-C---chHHHHHHHhh-
Q 024606           39 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-N---EREEELLELVQ-  113 (265)
Q Consensus        39 ~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~-~---~~~~~l~~~l~-  113 (265)
                      ||||||+||+||+|++|++++..++++++|++|+||+   +++...++|+..++|......+. .   ..++++.+.++ 
T Consensus         1 MkIaVl~SG~GSnL~aLl~a~~~~~l~~~I~~Visn~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   77 (209)
T d1jkxa_           1 MNIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNK---ADAFGLERARQAGIATHTLIASAFDSREAYDRELIHEIDM   77 (209)
T ss_dssp             CEEEEEESSCCHHHHHHHHHHHTTSSSSEEEEEEESC---TTCHHHHHHHHTTCEEEECCGGGCSSHHHHHHHHHHHHGG
T ss_pred             CEEEEEEecCcHHHHHHHHHHHcCCCCCEEEEEEeCC---CCcccchhhhccccceeeeeccccccccchHHHHHHHHHh
Confidence            7999999999999999999999999999999999987   46778999999999987655321 1   23556777777 


Q ss_pred             -CCCEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCCcHHHHHHHh
Q 024606          114 -NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDA  192 (265)
Q Consensus       114 -~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~~iNiHpslLP~yRG~~pi~~ai~~  192 (265)
                       ++|++|++|||+                              |+|+++++.++.++||+|||+||+|||.+|++||+.+
T Consensus        78 ~~~Dliv~~g~~~------------------------------il~~~~l~~~~~~~iN~HpslLP~~rG~~p~~~~i~~  127 (209)
T d1jkxa_          78 YAPDVVVLAGFMR------------------------------ILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALEN  127 (209)
T ss_dssp             GCCSEEEESSCCS------------------------------CCCHHHHHHTTTSEEEEESSCTTSCCSSCHHHHHHHT
T ss_pred             cCCCEEEEeeeeE------------------------------ecChhhhcccccCEEEeCCchhcccCCcCchhHHHHC
Confidence             899999999999                              9999999999999999999999999999999999999


Q ss_pred             CCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecCCceee
Q 024606          193 GVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVV  264 (265)
Q Consensus       193 G~~~~GvTvH~v~~~~D~G~II~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~ai~~i~~g~~~~~~~~k~vv  264 (265)
                      |++++|+|+|+|++++|+||||.|++++|.++||.++|++|+...+++++.++++.+.+|++...+ +++.+
T Consensus       128 g~~~~G~t~h~~~~~~D~G~Ii~q~~~~i~~~d~~~~l~~k~~~~e~~l~~~~i~~i~~~~i~~~~-~~~~~  198 (209)
T d1jkxa_         128 GDEEHGTSVHFVTDELDGGPVILQAKVPVFAGDSEDDITARVQTQEHAIYPLVISWFADGRLKMHE-NAAWL  198 (209)
T ss_dssp             TCSEEEEEEEECCSSTTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEET-TEEEE
T ss_pred             CCeeecceEEEecCCCCcccEeeEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeEEcC-CEEEE
Confidence            999999999999999999999999999999999999999999999999999999999999998765 77754
>d1meoa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zgha2 c.65.1.1 (A:1-164) Methionyl-tRNAfmet formyltransferase {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} Back     information, alignment and structure
>d2d13a1 c.26.2.1 (A:2-227) Hypothetical protein PH1257 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} Back     information, alignment and structure
>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Back     information, alignment and structure
>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} Back     information, alignment and structure
>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} Back     information, alignment and structure
>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Back     information, alignment and structure
>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Back     information, alignment and structure
>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} Back     information, alignment and structure