Citrus Sinensis ID: 024610

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-----
Protein Sequence
MFRINRLINQTRASLITSKQLLTHEHKLFPQHYAQKSSTRFLDIYQLGNKQAVEKERARLADEMNRGYFADVAELKKHGGKIATANKIIIPALAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEAFSDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLSCTSLLLEGE
Secondary Structure (PSIPRED)
cHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHHcccEEEEcccccccccccccccccEEEcccccccccccccccccccccccccccEEEEEEEEHHHHHHHHHHccHHHHHHHcccccEEEEEEEccccccccHHHHHHHHHHHHHccccccccccccEEEEEcccHHHHHHHHccccccEEEEEEEEccccEEEcccccccHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHccccccccccHccccccccccccccccHHHcccHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHccccEEEcccccccHHHHcccccEEEEEccccEEEcccccccccccccccccccEEEEEEEEcHHHHHHHHHHHcHHHHHHccccccEEEEEEccccHccccHHHHHHHHHHHHHHHHccccHHHccEEEEEcccHHHHHHcccccccEEEEEEEccccEEEEEccccccHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MFRINRLINQTRASLITSKQLLTHehklfpqhyaqksstRFLDIYQLGNKQAVEKERARLADEMNRGYFADVAELKKHggkiatankiiipalaavkfpdldvsysdrttlklpvcssgdvanadkaaipkVSLVCLTFRASSqamvdswsspffeafsdsknvhlYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYsfgdhyyfrKELKILNLLTGYIFLLDKFgrirwqgfgmatpEELSSLLSCTSLLLEGE
Flexible Loop (DISEMBL)
mfrinrlinqtraSLITSKQLLTHEHKLFPQHYAQKSSTRFLDIYQLGNKQAVEKERARLADEMNRGYFADVAELKKHGGKIATANKIIIPALAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEAFSDSKNVHLYEVSfidswllcRSPIKRILLKIMRKskdagenvlQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSsllsctslllege
Low Complexity Region (SEG)
MFRINRLINQTRASLITSKQLLTHEHKLFPQHYAQKSSTRFLDIYQLGNKQAVEKERARLADEMNRGYFADVAELKKHGGKIATANKIIIPALAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEAFSDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPeelssllsctslllege
Disordered region (IsUnstruct)
******LINQTRASLITSKQLLTHEHKLFPQHYAQKSSTRFLDIYQLGNKQAVE***ARLADEMNRGYFADVAELKKHGGKIATANKIIIPALAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEAFSDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLSCTSL*****
Disordered Region (DISOPRED)
***************************************************************MNRGYFADVAELKKHGGKIATANKIIIPALAAVKFPDLDVSYSDRTTLK***********ADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEAFSDSKNVHLYEVSFIDSWLLCRSPIKRI*****************RQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLSCTSLLLE**
Disordered Region (DISEMBL)
MFRINRLINQTRASLITSKQLLTHEHKLFPQHYAQKSSTRFLDIYQLGNKQAVEKERARLADEMNRGYFADVAELKKHGGKIATANKIIIPALAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEAFSDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLSCTSLLLEGE
Disordered Region (DISPRO)
MFRINRLINQTRASLITSKQLLTHEHKLFPQHYAQKSSTRFLDIYQLGNKQAVEKERARLADEMNRGYFADVAELKKHGGKIATANKIIIPALAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEAFSDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLSCTSLLLEG*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFRINRLINQTRASLITSKQLLTHEHKLFPQHYAQKSSTRFLDIYQLGNKQAVEKERARLADEMNRGYFADVAELKKHGGKIATANKIIIPALAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEAFSDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLSCTSLLLEGE
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
359479327	272	PREDICTED: uncharacterized protein LOC10	0.950	0.926	0.702	1e-103
224104763	265	predicted protein [Populus trichocarpa]	0.966	0.966	0.659	5e-98
449456066	272	PREDICTED: uncharacterized protein LOC10	0.939	0.915	0.665	7e-94
356549112	269	PREDICTED: uncharacterized protein LOC10	0.932	0.918	0.642	1e-88
79338671	274	uncharacterized protein [Arabidopsis tha	0.905	0.875	0.615	2e-85
297849134	274	hypothetical protein ARALYDRAFT_470883 [	0.875	0.846	0.626	2e-84
6579209	323	T23G18.8 [Arabidopsis thaliana]	0.905	0.743	0.512	3e-78
145323794	202	uncharacterized protein [Arabidopsis tha	0.762	1.0	0.623	1e-73
147792727	702	hypothetical protein VITISV_018663 [Viti	0.724	0.273	0.704	3e-73
115462381	268	Os05g0176500 [Oryza sativa Japonica Grou	0.830	0.820	0.555	5e-72

>gi|359479327|ref|XP_002272430.2| PREDICTED: uncharacterized protein LOC100249926 [Vitis vinifera] gi|297734874|emb|CBI17108.3| unnamed protein product [Vitis vinifera]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 182/259 (70%), Positives = 215/259 (83%), Gaps = 7/259 (2%)

Query: 1   MFRINRLI---NQTRASLITSKQLLTHEHKLFP----QHYAQKSSTRFLDIYQLGNKQAV 53
           M R+NRLI     TR+S + S+QL +HE    P     H A ++STRFLDIYQLGNK+A 
Sbjct: 1   MLRLNRLILNSASTRSSTLLSRQLGSHEPPSLPLLPSHHLAHRTSTRFLDIYQLGNKEAF 60

Query: 54  EKERARLADEMNRGYFADVAELKKHGGKIATANKIIIPALAAVKFPDLDVSYSDRTTLKL 113
           EKERARLADEMNRGYFAD++E K+HGGKIA ANKIIIPA+AA+KFP L+V+YSD  +LKL
Sbjct: 61  EKERARLADEMNRGYFADMSEFKQHGGKIAMANKIIIPAMAAMKFPALEVNYSDGRSLKL 120

Query: 114 PVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEAFSDSKNVHLYEVSFID 173
           P+ S G+ A   K  IPK SL+CL+FRASSQAM+DSWS PFF+AFSDSKNV LYEVSF+D
Sbjct: 121 PISSHGNEAGTSKLDIPKASLLCLSFRASSQAMIDSWSKPFFDAFSDSKNVQLYEVSFVD 180

Query: 174 SWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLD 233
           SW L  +PIKR+LL+IM+KSK  G++VLQRQIVYSFGDHYYFRKELKILNLLTGY+FL+D
Sbjct: 181 SWFLSLNPIKRLLLRIMKKSKPDGKSVLQRQIVYSFGDHYYFRKELKILNLLTGYMFLVD 240

Query: 234 KFGRIRWQGFGMATPEELS 252
           KFGRIRWQGFG+A  EEL+
Sbjct: 241 KFGRIRWQGFGLAAEEELA 259

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104763|ref|XP_002313557.1| predicted protein [Populus trichocarpa] gi|222849965|gb|EEE87512.1| predicted protein [Populus trichocarpa]

 Score =  363 bits (931), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 178/270 (65%), Positives = 214/270 (79%), Gaps = 14/270 (5%)

Query: 1   MFRINRLINQT----RASLITSKQLLTH---EHKLFPQHYAQKSSTRFLDIYQLGNKQAV 53
           M R+NRLI  T    R S   S Q  T    +  +  QH+  ++  RFLDIY++GNK A+
Sbjct: 1   MLRLNRLIKHTNKWTRTSTFLSSQQQTQAVFDSSVSCQHFF-RTQIRFLDIYKIGNKAAI 59

Query: 54  EKERARLADEMNRGYFADVAELKKHGGKIATANKIIIPALAAVKFPDLDVSYSDRTTLKL 113
           EKERARLADE+NRGYFAD++E KKHGGKIA ANKIIIPA+AAVKFPD+ V+YS+ T+LKL
Sbjct: 60  EKERARLADELNRGYFADISEFKKHGGKIAVANKIIIPAVAAVKFPDVKVNYSNGTSLKL 119

Query: 114 PVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEAFSDSKNVHLYEVSFID 173
           P+ S G+V  AD       +L+CL+FRASSQ M++SWS PF EAF D+KNVHLYEVSFID
Sbjct: 120 PIRSDGNVVGAD------ATLMCLSFRASSQEMINSWSMPFLEAFRDAKNVHLYEVSFID 173

Query: 174 SWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLD 233
           SW LC +PIK++LL++MRKS   G + LQ+QIVYSFGDHYY RK+L+ILNLLTGYIFLLD
Sbjct: 174 SWFLCLNPIKKMLLRMMRKSDTDGNDALQKQIVYSFGDHYYMRKDLRILNLLTGYIFLLD 233

Query: 234 KFGRIRWQGFGMATPEELSSLLSCTSLLLE 263
           KFGRIRW GFG+AT EELSSL+SCTSLLLE
Sbjct: 234 KFGRIRWGGFGLATEEELSSLVSCTSLLLE 263

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456066|ref|XP_004145771.1| PREDICTED: uncharacterized protein LOC101222490 [Cucumis sativus] gi|449496215|ref|XP_004160075.1| PREDICTED: uncharacterized LOC101222490 [Cucumis sativus]

 Score =  349 bits (896), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 173/260 (66%), Positives = 209/260 (80%), Gaps = 11/260 (4%)

Query: 1   MFRINRLINQT---RASLITSKQLLTHEHK--LFP-QHYAQKSSTRFLDIYQLGNKQAVE 54
           MF + RL+      RASL  + QL  +E K  +FP QH AQ +S RFLDIYQLGNK A+E
Sbjct: 1   MFGLKRLVPHACSIRASL--TMQLSVYEDKFLVFPSQHLAQLTSNRFLDIYQLGNKTAIE 58

Query: 55  KERARLADEMNRGYFADVAELKKHGGKIATANKIIIPALAAVKFPDLDVSYSDRTTLKLP 114
           KERARLADE+NRGYFAD++ELK+HGGKIA ANKI+IPA+AAVKFP+ +VSYSD  TLKLP
Sbjct: 59  KERARLADEINRGYFADMSELKQHGGKIAAANKILIPAMAAVKFPEFEVSYSDGKTLKLP 118

Query: 115 VCSSGDV--ANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEAFSDSKNVHLYEVSFI 172
           + S  +V   N+  + +P  +L+CL+FRA+SQAM+DSWS+ F  AFS S NV LYEVSFI
Sbjct: 119 IKSDVNVIEGNSSPSGLPMATLLCLSFRANSQAMIDSWSASFLNAFSSSNNVQLYEVSFI 178

Query: 173 DSWLLCRSPIKRILLKIMRKSKDAGEN-VLQRQIVYSFGDHYYFRKELKILNLLTGYIFL 231
           DSW LCR+PIK++LL++MRKS    +N  LQRQIVYSFGDHYYFRKELKILNLLTGY+FL
Sbjct: 179 DSWFLCRNPIKKLLLRLMRKSSGNAQNDSLQRQIVYSFGDHYYFRKELKILNLLTGYVFL 238

Query: 232 LDKFGRIRWQGFGMATPEEL 251
           +DK GRIRWQGFG+AT EE+
Sbjct: 239 VDKLGRIRWQGFGLATQEEV 258

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549112|ref|XP_003542941.1| PREDICTED: uncharacterized protein LOC100793428 [Glycine max]

 Score =  332 bits (850), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 162/252 (64%), Positives = 197/252 (78%), Gaps = 5/252 (1%)

Query: 1   MFRINRLINQTRASLITSKQLLTHEHKLFP-QHYAQKSSTRFLDIYQLGNKQAVEKERAR 59
           M  + RLI Q R+SL  S  L    H   P QH A+ +  RF D++QLGNK+A+EKERAR
Sbjct: 6   MVGLRRLIRQ-RSSLRDS--LAEKVHSPVPSQHLARLTPKRFFDLHQLGNKEAIEKERAR 62

Query: 60  LADEMNRGYFADVAELKKHGGKIATANKIIIPALAAVKFPDLDVSYSDRTTLKLPVCSSG 119
           LADEM RGYFAD+AE KKH GKIA ANK+IIPA+ A KFPD +VS++D  T+KLP+  S 
Sbjct: 63  LADEMTRGYFADMAEFKKHAGKIAVANKLIIPAMVATKFPDFEVSFTDGKTMKLPIRVSD 122

Query: 120 DVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEAFSDSKNVHLYEVSFIDSWLLCR 179
              ++DK+++PK SLVCL+FRASSQ M++SWS PF EAF  S +VHLY+VSFIDSWLLCR
Sbjct: 123 RAVDSDKSSVPKASLVCLSFRASSQEMINSWSVPFTEAFRKSNDVHLYQVSFIDSWLLCR 182

Query: 180 SPIKRILLKIMRK-SKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRI 238
           +PIKR+LL  M+K S    ++ LQ+QIVYSFGDHYYFRKEL+ILNLLTGYIFLLD FGR+
Sbjct: 183 APIKRLLLWTMKKPSHHESKDTLQQQIVYSFGDHYYFRKELRILNLLTGYIFLLDNFGRV 242

Query: 239 RWQGFGMATPEE 250
           RWQGFG AT +E
Sbjct: 243 RWQGFGSATQDE 254

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79338671|ref|NP_172300.2| uncharacterized protein [Arabidopsis thaliana] gi|110736304|dbj|BAF00122.1| hypothetical protein [Arabidopsis thaliana] gi|332190141|gb|AEE28262.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  321 bits (823), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 149/242 (61%), Positives = 191/242 (78%), Gaps = 2/242 (0%)

Query: 26  HKLFP-QHYAQKSSTR-FLDIYQLGNKQAVEKERARLADEMNRGYFADVAELKKHGGKIA 83
           H   P Q  A +S+TR FLD Y+ GNK+A+E ERARL DEMNRGYFAD+ E K+HGGKIA
Sbjct: 33  HDSLPSQMPALRSTTRSFLDFYKFGNKKAIEDERARLNDEMNRGYFADMKEFKEHGGKIA 92

Query: 84  TANKIIIPALAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASS 143
            ANK IIPA +A+KFP L V++S+  +LKLP+  + +  + +   +PKVSLVCL+FRASS
Sbjct: 93  AANKTIIPAASAIKFPVLAVTFSNGKSLKLPIAPNSNEVDTESLVVPKVSLVCLSFRASS 152

Query: 144 QAMVDSWSSPFFEAFSDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQR 203
           Q M+ SWS PF E+F + K++ L+EVSFID WLL  +PI+++LL++++K  +   +VLQR
Sbjct: 153 QEMISSWSKPFLESFGNRKDLQLFEVSFIDKWLLGLAPIRKLLLRVLQKPNNNENSVLQR 212

Query: 204 QIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLSCTSLLLE 263
           Q+ Y+FGDHYYFRKE+K+LNLLTGYI LLDK GRIRWQGFG ATPEE+S LLSCTSLLLE
Sbjct: 213 QVGYAFGDHYYFRKEIKVLNLLTGYILLLDKSGRIRWQGFGTATPEEVSQLLSCTSLLLE 272

Query: 264 GE 265
            +
Sbjct: 273 DQ 274

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849134|ref|XP_002892448.1| hypothetical protein ARALYDRAFT_470883 [Arabidopsis lyrata subsp. lyrata] gi|297338290|gb|EFH68707.1| hypothetical protein ARALYDRAFT_470883 [Arabidopsis lyrata subsp. lyrata]

 Score =  318 bits (814), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 146/233 (62%), Positives = 185/233 (79%), Gaps = 1/233 (0%)

Query: 34  AQKSSTR-FLDIYQLGNKQAVEKERARLADEMNRGYFADVAELKKHGGKIATANKIIIPA 92
           A +S+TR FLD YQ GNK+A+E ER RL DEMNRGYFAD+ E K+HGGKIA ANKI+IPA
Sbjct: 42  ALRSTTRSFLDFYQFGNKKAIEDERTRLNDEMNRGYFADMKEFKEHGGKIAAANKILIPA 101

Query: 93  LAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSS 152
            +A+KFP L V+YS+   L LP+  + +  + +  A+PKVSLVCL+FRASSQ M+ SWS 
Sbjct: 102 ASAMKFPVLAVTYSNGQRLNLPITPNSNEVDTESLAVPKVSLVCLSFRASSQEMISSWSK 161

Query: 153 PFFEAFSDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDH 212
           PF E F + K++ L+EVSFID WLL  +PI+++LL++++K  +   +VLQRQ VY+FGDH
Sbjct: 162 PFLETFGNRKDLQLFEVSFIDKWLLGLAPIRKLLLRVLQKPNNNENSVLQRQAVYAFGDH 221

Query: 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLSCTSLLLEGE 265
           Y FRK++K+LNLLTGYI LLDK GRIRWQGFG ATPEE+S LLSCTSLLLE +
Sbjct: 222 YNFRKQIKVLNLLTGYILLLDKSGRIRWQGFGTATPEEVSQLLSCTSLLLEDQ 274

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6579209|gb|AAF18252.1|AC011438_14 T23G18.8 [Arabidopsis thaliana]

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 149/291 (51%), Positives = 191/291 (65%), Gaps = 51/291 (17%)

Query: 26  HKLFP-QHYAQKSSTR-FLDIYQLGNKQAVEKERARLADEMNRGYFADVAELKKHGGK-- 81
           H   P Q  A +S+TR FLD Y+ GNK+A+E ERARL DEMNRGYFAD+ E K+HGGK  
Sbjct: 33  HDSLPSQMPALRSTTRSFLDFYKFGNKKAIEDERARLNDEMNRGYFADMKEFKEHGGKDP 92

Query: 82  -----------------------------------------------IATANKIIIPALA 94
                                                          IA ANK IIPA +
Sbjct: 93  LSQIPDFVFFATPILKGGLFSLAMAYIIWVRLYLVMHDLDTVACRDLIAAANKTIIPAAS 152

Query: 95  AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPF 154
           A+KFP L V++S+  +LKLP+  + +  + +   +PKVSLVCL+FRASSQ M+ SWS PF
Sbjct: 153 AIKFPVLAVTFSNGKSLKLPIAPNSNEVDTESLVVPKVSLVCLSFRASSQEMISSWSKPF 212

Query: 155 FEAFSDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYY 214
            E+F + K++ L+EVSFID WLL  +PI+++LL++++K  +   +VLQRQ+ Y+FGDHYY
Sbjct: 213 LESFGNRKDLQLFEVSFIDKWLLGLAPIRKLLLRVLQKPNNNENSVLQRQVGYAFGDHYY 272

Query: 215 FRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLSCTSLLLEGE 265
           FRKE+K+LNLLTGYI LLDK GRIRWQGFG ATPEE+S LLSCTSLLLE +
Sbjct: 273 FRKEIKVLNLLTGYILLLDKSGRIRWQGFGTATPEEVSQLLSCTSLLLEDQ 323

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145323794|ref|NP_001077486.1| uncharacterized protein [Arabidopsis thaliana] gi|54261719|gb|AAV31163.1| At1g08220 [Arabidopsis thaliana] gi|58331797|gb|AAW70396.1| At1g08220 [Arabidopsis thaliana] gi|332190142|gb|AEE28263.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  282 bits (721), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 126/202 (62%), Positives = 163/202 (80%)

Query: 64  MNRGYFADVAELKKHGGKIATANKIIIPALAAVKFPDLDVSYSDRTTLKLPVCSSGDVAN 123
           MNRGYFAD+ E K+HGGKIA ANK IIPA +A+KFP L V++S+  +LKLP+  + +  +
Sbjct: 1   MNRGYFADMKEFKEHGGKIAAANKTIIPAASAIKFPVLAVTFSNGKSLKLPIAPNSNEVD 60

Query: 124 ADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEAFSDSKNVHLYEVSFIDSWLLCRSPIK 183
            +   +PKVSLVCL+FRASSQ M+ SWS PF E+F + K++ L+EVSFID WLL  +PI+
Sbjct: 61  TESLVVPKVSLVCLSFRASSQEMISSWSKPFLESFGNRKDLQLFEVSFIDKWLLGLAPIR 120

Query: 184 RILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGF 243
           ++LL++++K  +   +VLQRQ+ Y+FGDHYYFRKE+K+LNLLTGYI LLDK GRIRWQGF
Sbjct: 121 KLLLRVLQKPNNNENSVLQRQVGYAFGDHYYFRKEIKVLNLLTGYILLLDKSGRIRWQGF 180

Query: 244 GMATPEELSSLLSCTSLLLEGE 265
           G ATPEE+S LLSCTSLLLE +
Sbjct: 181 GTATPEEVSQLLSCTSLLLEDQ 202

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147792727|emb|CAN64373.1| hypothetical protein VITISV_018663 [Vitis vinifera]

 Score =  281 bits (718), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 138/196 (70%), Positives = 161/196 (82%), Gaps = 4/196 (2%)

Query: 46  QLGNKQAVEKE--RARLADEMNRGYFADVAELKKHGGKIATANKIIIPALAAVKFPDLDV 103
           QLGNK+A EK    A  ADEMNRGYFAD++E K+HGGKIA ANKIIIPA+AA+KFP L+V
Sbjct: 506 QLGNKEAFEKGAGSAGSADEMNRGYFADMSEFKQHGGKIAMANKIIIPAMAAMKFPALEV 565

Query: 104 SYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEAFSDSKN 163
           +YSD  +LKLP+ S G+ A   K  IPK SL+CL+FRASSQAM+DSWS PFF+AFSDSKN
Sbjct: 566 NYSDGRSLKLPISSHGNEAGTSKLDIPKASLLCLSFRASSQAMIDSWSKPFFDAFSDSKN 625

Query: 164 VHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILN 223
           V LYEVSF+DSW L  +PIKR+LL+IM+KSK  G++VLQRQIVYSFGDHYYFRKELKILN
Sbjct: 626 VQLYEVSFVDSWFLSLNPIKRLLLRIMKKSKPDGKSVLQRQIVYSFGDHYYFRKELKILN 685

Query: 224 LLTGY--IFLLDKFGR 237
           LLTGY  + L   F R
Sbjct: 686 LLTGYRNLVLFPHFNR 701

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115462381|ref|NP_001054790.1| Os05g0176500 [Oryza sativa Japonica Group] gi|50511421|gb|AAT77344.1| unknown protein [Oryza sativa Japonica Group] gi|113578341|dbj|BAF16704.1| Os05g0176500 [Oryza sativa Japonica Group] gi|215708812|dbj|BAG94081.1| unnamed protein product [Oryza sativa Japonica Group] gi|215765479|dbj|BAG87176.1| unnamed protein product [Oryza sativa Japonica Group] gi|222630383|gb|EEE62515.1| hypothetical protein OsJ_17313 [Oryza sativa Japonica Group]

 Score =  276 bits (707), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 135/243 (55%), Positives = 173/243 (71%), Gaps = 23/243 (9%)

Query: 41  FLDIYQLGNKQAVEK---ERARLADEMNRGYFADVAELKKHGGKIATANKIIIPALAAVK 97
           FL +    +K+ +EK   ++ARL DEM+RGYFAD+AE++K+GGK+ATANKIIIP +AAVK
Sbjct: 31  FLGLNMKASKETIEKKEKDKARLMDEMSRGYFADIAEIRKNGGKLATANKIIIPEIAAVK 90

Query: 98  FPDLDVSYSDRTTLKLP---------------VCSSGDVANADKAAIPKVSLVCLTFRAS 142
           FPDL V   D  T+ LP               V +  D   A    +P  SLVCL+FRAS
Sbjct: 91  FPDLSVKSPDGRTVNLPLVAPPRNDDPQTGNTVDTQNDDCKAGDMVVPDASLVCLSFRAS 150

Query: 143 SQAMVDSWSSPFFEAFSDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQ 202
           SQ M ++WS PF +AFS + N+ +YEVSFIDSWLL  SP++++ LK+M KS     N  Q
Sbjct: 151 SQKMAETWSLPFLDAFSSAGNIQVYEVSFIDSWLLSSSPVRQVFLKVMTKS-----NNPQ 205

Query: 203 RQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLSCTSLLL 262
           R  VY+FGDHYYFRK+L ILNLLTGYI+L+D+ GR+RWQGFG AT EELSSL +CTS+LL
Sbjct: 206 RHAVYAFGDHYYFRKKLHILNLLTGYIYLVDRLGRVRWQGFGSATQEELSSLTACTSILL 265

Query: 263 EGE 265
           +G+
Sbjct: 266 DGK 268

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
TAIR|locus:2200028	274	AT1G08220 "AT1G08220" [Arabido	0.905	0.875	0.570	8.6e-72
DICTYBASE|DDB_G0273597	260	DDB_G0273597 "unknown" [Dictyo	0.852	0.869	0.274	5.9e-10
DICTYBASE|DDB_G0273147	260	DDB_G0273147 "unknown" [Dictyo	0.852	0.869	0.274	5.9e-10
ASPGD|ASPL0000058041	362	AN1230 [Emericella nidulans (t	0.683	0.5	0.255	7.2e-05

TAIR|locus:2200028 AT1G08220 "AT1G08220" [Arabidopsis thaliana (taxid:3702)]

 Score = 726 (260.6 bits), Expect = 8.6e-72, P = 8.6e-72
 Identities = 138/242 (57%), Positives = 183/242 (75%)

Query:     8 INQTRASLITSKQLLTHEHKLFPQHYAQKSSTR-FLDIYQLGNKQAVEKERARLADEMNR 66
             +N+    L +  +   H+  L  Q  A +S+TR FLD Y+ GNK+A+E ERARL DEMNR
Sbjct:    17 LNKHHQGLFSLTRYENHD-SLPSQMPALRSTTRSFLDFYKFGNKKAIEDERARLNDEMNR 75

Query:    67 GYFADVAELKKHGGKIATANKIIIPALAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADK 126
             GYFAD+ E K+HGGKIA ANK IIPA +A+KFP L V++S+  +LKLP+  + +  + + 
Sbjct:    76 GYFADMKEFKEHGGKIAAANKTIIPAASAIKFPVLAVTFSNGKSLKLPIAPNSNEVDTES 135

Query:   127 AAIPKVSLVCLTFRASSQAMVDSWSSPFFEAFSDSKNVHLYEVSFIDSWLLCRSPIKRIL 186
               +PKVSLVCL+FRASSQ M+ SWS PF E+F + K++ L+EVSFID WLL  +PI+++L
Sbjct:   136 LVVPKVSLVCLSFRASSQEMISSWSKPFLESFGNRKDLQLFEVSFIDKWLLGLAPIRKLL 195

Query:   187 LKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMA 246
             L++++K  +   +VLQRQ+ Y+FGDHYYFRKE+K+LNLLTGYI LLDK GRIRWQGFG A
Sbjct:   196 LRVLQKPNNNENSVLQRQVGYAFGDHYYFRKEIKVLNLLTGYILLLDKSGRIRWQGFGTA 255

Query:   247 TP 248
             TP
Sbjct:   256 TP 257

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0033615 "mitochondrial proton-transporting ATP synthase complex assembly" evidence=IEA

DICTYBASE|DDB_G0273597 DDB_G0273597 "unknown" [Dictyostelium discoideum (taxid:44689)]

 Score = 158 (60.7 bits), Expect = 5.9e-10, P = 5.9e-10
 Identities = 70/255 (27%), Positives = 118/255 (46%)

Query:     5 NRLINQTRA-SLITSKQLLTHEHK--LFPQHYAQKSST---RFLDIYQLGNKQAVEKERA 58
             NRLIN  ++ + I SK LL +  K  +F Q    ++ +    FL+ ++   + A  +++ 
Sbjct:     4 NRLINSCKSLNGIVSKSLLNNTTKNVIFQQQQQIRNMSSWKNFLNPFKYYKENADTQQKR 63

Query:    59 RLADEMNRGYFADVAELKKHGG-KIATANKIIIPALAAVKFPDLDVSYSDRTTLKLPVCS 117
             R+  E+  G   DV E  K+   K+   +  +I    A   P +     D   L+ P C 
Sbjct:    64 RVKKELEDGVLWDVKEFMKNPTMKVFVGSPNLINESQAEVVPQIKTKDLDGNKLEFPNCL 123

Query:   118 SGDVANADKAAIPKVSLVCLT-FRASSQAMVDSWSSPFFEAFSDSKNVH-LYEVSFIDSW 175
             + D  N D    P + +V +  F A     + SWS PF + F    ++H ++ VS +   
Sbjct:   124 NKD--NND----PSLLIVSVKPFHADK--FIKSWSEPFKKEFPQL-DIHSIFLVSQLGYQ 174

Query:   176 LLCRSPIKRILLKIMRKSK--DAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLD 233
             +L  SP    LLK  RK K  D  E+     +     +  +  ++  + N  + YIFL+ 
Sbjct:   175 IL--SP----LLKSTRKGKNNDLTESWYNLPMAIKKSNTIF--EDFGVTNPYSSYIFLVV 226

Query:   234 KFGRIRWQGFGMATP 248
               G+IRW+  G++TP
Sbjct:   227 D-GKIRWKSSGLSTP 240

GO:0033615 "mitochondrial proton-transporting ATP synthase complex assembly" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0273147 DDB_G0273147 "unknown" [Dictyostelium discoideum (taxid:44689)]

 Score = 158 (60.7 bits), Expect = 5.9e-10, P = 5.9e-10
 Identities = 70/255 (27%), Positives = 118/255 (46%)

Query:     5 NRLINQTRA-SLITSKQLLTHEHK--LFPQHYAQKSST---RFLDIYQLGNKQAVEKERA 58
             NRLIN  ++ + I SK LL +  K  +F Q    ++ +    FL+ ++   + A  +++ 
Sbjct:     4 NRLINSCKSLNGIVSKSLLNNTTKNVIFQQQQQIRNMSSWKNFLNPFKYYKENADTQQKR 63

Query:    59 RLADEMNRGYFADVAELKKHGG-KIATANKIIIPALAAVKFPDLDVSYSDRTTLKLPVCS 117
             R+  E+  G   DV E  K+   K+   +  +I    A   P +     D   L+ P C 
Sbjct:    64 RVKKELEDGVLWDVKEFMKNPTMKVFVGSPNLINESQAEVVPQIKTKDLDGNKLEFPNCL 123

Query:   118 SGDVANADKAAIPKVSLVCLT-FRASSQAMVDSWSSPFFEAFSDSKNVH-LYEVSFIDSW 175
             + D  N D    P + +V +  F A     + SWS PF + F    ++H ++ VS +   
Sbjct:   124 NKD--NND----PSLLIVSVKPFHADK--FIKSWSEPFKKEFPQL-DIHSIFLVSQLGYQ 174

Query:   176 LLCRSPIKRILLKIMRKSK--DAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLD 233
             +L  SP    LLK  RK K  D  E+     +     +  +  ++  + N  + YIFL+ 
Sbjct:   175 IL--SP----LLKSTRKGKNNDLTESWYNLPMAIKKSNTIF--EDFGVTNPYSSYIFLVV 226

Query:   234 KFGRIRWQGFGMATP 248
               G+IRW+  G++TP
Sbjct:   227 D-GKIRWKSSGLSTP 240

GO:0033615 "mitochondrial proton-transporting ATP synthase complex assembly" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

ASPGD|ASPL0000058041 AN1230 [Emericella nidulans (taxid:162425)]

 Score = 120 (47.3 bits), Expect = 7.2e-05, P = 7.2e-05
 Identities = 51/200 (25%), Positives = 92/200 (46%)

Query:    55 KERARLADEMNRGYFADVAELKKHGGKIATANKIIIPALAAVKFPDLDVSYSDRTTLKLP 114
             K R  L  +  + YF + + ++ + GK   +N  +     A+ FP+L   Y   TTL  P
Sbjct:   129 KRREELTRQAAKPYFREWSNMRYNEGKTFVSNPRLFKRDKALYFPNL---YG--TTLASP 183

Query:   115 VCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFF-----EAFSDSKN-VHLYE 168
                  +  N       KVS+V L     +++ V +++ P F     EAF +  + V   +
Sbjct:   184 Q----EPQNTTSILRGKVSVVNLFSSVWAESQVATFTGPQFNPGLYEAFKEGSHLVQKVD 239

Query:   169 VSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGY 228
             ++  D+ L  ++ + R+ +  MR      ++   R  +   G     ++ + ++N   GY
Sbjct:   240 INVEDNIL--KAWLVRMFMWRMRGKLPKEQH--PRYFLVRKGLDDGLKEAIAMMNSRVGY 295

Query:   229 IFLLDKFGRIRWQGFGMATP 248
             ++LLD+  RIRW G G A P
Sbjct:   296 VYLLDENCRIRWAGSGPAEP 315


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.136   0.400    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      265       248   0.00079  114 3  11 22  0.38    33
                                                     32  0.46    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  606 (64 KB)
  Total size of DFA:  187 KB (2107 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.15u 0.17s 20.32t   Elapsed:  00:00:01
  Total cpu time:  20.15u 0.17s 20.32t   Elapsed:  00:00:01
  Start:  Fri May 10 15:35:27 2013   End:  Fri May 10 15:35:28 2013

GO:0033615 "mitochondrial proton-transporting ATP synthase complex assembly" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0032592 "integral to mitochondrial membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00022118001 SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (272 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	265
pfam05176	255	pfam05176, ATP-synt_10, ATP10 protein	7e-54

>gnl|CDD|218480 pfam05176, ATP-synt_10, ATP10 protein

 Score =  174 bits (443), Expect = 7e-54
 Identities = 65/222 (29%), Positives = 94/222 (42%), Gaps = 25/222 (11%)

Query: 47  LGNKQAVEKERARLADEMNRGYFADVAELKKHGGKIATANKIIIPALAAVKFPDLDVSYS 106
             N +  EK R  L DE ++ YF D  E +K  GK+  A   +  A  A+ FP+      
Sbjct: 52  FFNYEKHEKRRKELTDEFSKSYFRDWKEFRKTNGKLFLAPPSLFKADKALYFPNFS---- 107

Query: 107 DRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSS-PFFEAF--SDSKN 163
              TL      +G   N       KVS+V L   A  +    S+   PF + +   D  +
Sbjct: 108 -GRTL------AGPPQNTTDLLRGKVSVVRLFSSAWGEKQARSYFKNPFLKDYLKEDYPD 160

Query: 164 VHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGD----HYYFRKEL 219
             + E++  ++WL      K  L+K+        +   +R   Y         +  R+ L
Sbjct: 161 AQIVEINVEENWL------KAWLVKLF-MGNLRKKVPEERHERYFIVRKGQLPFDIRESL 213

Query: 220 KILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLSCTSLL 261
            ILN L GY++L+D   RIRW G G AT EEL  L  C   L
Sbjct: 214 GILNSLVGYVYLVDHNCRIRWAGSGPATEEELELLWKCVRGL 255

ATP 10 is essential for the assembly of a functional mitochondrial ATPase complex. Length = 255

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	265
PF05176	252	ATP-synt_10: ATP10 protein; InterPro: IPR007849 Th	100.0
KOG4614	287	consensus Inner membrane protein required for asse	100.0
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	98.98
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	98.98
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	98.91
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	98.86
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	98.84
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	98.78
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	98.78
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	98.75
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	98.7
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	98.7
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	98.67
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	98.65
PTZ00056	199	glutathione peroxidase; Provisional	98.61
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	98.6
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	98.59
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	98.58
PLN02412	167	probable glutathione peroxidase	98.56
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	98.56
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	98.52
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	98.52
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	98.49
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	98.46
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	98.45
PTZ00256	183	glutathione peroxidase; Provisional	98.42
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	98.39
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	98.38
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	98.35
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	98.32
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	98.31
PRK13599	215	putative peroxiredoxin; Provisional	98.21
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	98.2
PRK13190	202	putative peroxiredoxin; Provisional	98.2
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	98.17
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	98.13
PRK13728	181	conjugal transfer protein TrbB; Provisional	98.1
PRK13189	222	peroxiredoxin; Provisional	98.1
PRK13191	215	putative peroxiredoxin; Provisional	98.06
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	98.02
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.99
PF09695	160	YtfJ_HI0045: Bacterial protein of unknown function	97.9
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	97.89
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	97.87
PTZ00137	261	2-Cys peroxiredoxin; Provisional	97.85
PRK15000	200	peroxidase; Provisional	97.84
PTZ00253	199	tryparedoxin peroxidase; Provisional	97.77
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	97.58
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	97.58
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	97.41
PF02630	174	SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam	97.31
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	97.21
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	97.15
PRK10606	183	btuE putative glutathione peroxidase; Provisional	97.1
COG0450	194	AhpC Peroxiredoxin [Posttranslational modification	96.76
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	96.73
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	96.59
COG1999	207	Uncharacterized protein SCO1/SenC/PrrC, involved i	96.52
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	96.25
PHA02278	103	thioredoxin-like protein	95.97
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	95.97
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	95.52
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	95.05
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	94.95
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	94.78
COG3054	184	Predicted transcriptional regulator [General funct	94.68
PRK09381	109	trxA thioredoxin; Provisional	94.35
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	94.19
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	93.44
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	93.27
PRK10996	139	thioredoxin 2; Provisional	93.09
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	92.85
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	92.7
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	92.55
cd02947	93	TRX_family TRX family; composed of two groups: Gro	92.2
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	91.19
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	91.08
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	90.93
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	90.92
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	90.68
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	90.06
PTZ00051	98	thioredoxin; Provisional	89.26
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	88.38
KOG1651	171	consensus Glutathione peroxidase [Posttranslationa	88.34
PF02484	111	Rhabdo_NV: Rhabdovirus Non-virion protein; InterPr	87.98
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	87.91
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	87.84
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	87.6
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	87.55
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	87.01
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	86.5
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	86.22
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	85.54
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	84.67
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	83.84
PF13728	215	TraF: F plasmid transfer operon protein	82.16
KOG4614	287	consensus Inner membrane protein required for asse	81.21
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	80.98

>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex

Probab=100.00  E-value=2.2e-67  Score=475.63  Aligned_cols=225  Identities=33%  Similarity=0.496  Sum_probs=198.4

Q ss_pred             hhhhcCCCCCccc-hhcccccccccchhhhcChhHHHHHHHHHHHHHccchhHHHHHhhhcCCeeeeccCcccccccccc
Q 024610           19 KQLLTHEHKLFPQ-HYAQKSSTRFLDIYQLGNKQAVEKERARLADEMNRGYFADVAELKKHGGKIATANKIIIPALAAVK   97 (265)
Q Consensus        19 ~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~e~~~~rrk~L~~e~~~~yf~D~~~~r~~~GK~f~ap~~l~ka~~Aly   97 (265)
                      +.++-..+|.+.. ..+.++....  ..|++|+|++++||++|.+|+++|||+||++||+|+||+|+||++|||+++|+|
T Consensus        23 rPiG~~~pP~~~~~~~~~~s~~~~--~~~~~~~ek~~~rrk~L~~e~~~~yf~D~~~~r~~~GK~f~ap~~l~~~~kAly  100 (252)
T PF05176_consen   23 RPIGLPQPPTPGNKGSDTRSLKQR--RDDFFNYEKHEKRRKELKKEMSKGYFRDWKEFRKTNGKIFIAPPSLFKADKALY  100 (252)
T ss_pred             CCCCCCCCCcCCCccccccchhhh--hhhhcCHHHHHHHHHHHHHHhccchHHHHHHHHhcCCccccCCcccCcHHhCCc
Confidence            5555566655541 1333444432  227999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHhhccCC--CeeEEEEecccch
Q 024610           98 FPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEAFSDSK--NVHLYEVSFIDSW  175 (265)
Q Consensus        98 FPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~~~~~~--~vqiv~In~~e~~  175 (265)
                      |||+.+++|+|+.           +|+++.++||||||+|+|+++||+|++||+.|+.+++.+++  ++|+|+||++|||
T Consensus       101 FP~l~g~tL~g~~-----------~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~p~~~~~~~~~~~~~q~v~In~~e~~  169 (252)
T PF05176_consen  101 FPNLQGKTLAGNK-----------VDTTDLLRGKVSLVCLFSSAWGEEMVDSWTSPFLEDFLQEPYGRVQIVEINLIENW  169 (252)
T ss_pred             CCCCccccCCCCC-----------cccccccCCceEEEEEeehHHHHHHHHHHhhHHHHHHhhCCCCceEEEEEecchHH
Confidence            9999977777765           46677889999999999999999999999999999999888  9999999999999


Q ss_pred             hhccccchHHHHHHHHhcCCCCCccccceeEEEcCC--hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHH
Q 024610          176 LLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGD--HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSS  253 (265)
Q Consensus       176 lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~--~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~  253 (265)
                      +|++  +.++++++||+.+|+++   |.+++...++  .+++||+|||+|+++|||||||++|||||||||+||++|++.
T Consensus       170 ~k~~--l~~~~~~~lrk~ip~~~---h~~Yf~~~~~~~~~~iRe~Lgi~N~~~GYvyLVD~~grIRWagsG~At~~E~~~  244 (252)
T PF05176_consen  170 LKSW--LVKLFMGSLRKSIPEER---HDRYFIVYRGQLSDDIREALGINNSYVGYVYLVDPNGRIRWAGSGPATPEELES  244 (252)
T ss_pred             HHHH--HHHHHhhhhhccCCHHH---CceEEEEeCCcccHHHHHHhCCCCCCcCeEEEECCCCeEEeCccCCCCHHHHHH
Confidence            9999  99999999999999864   5555545555  899999999999999999999999999999999999999999


Q ss_pred             HHHHHHhh
Q 024610          254 LLSCTSLL  261 (265)
Q Consensus       254 L~k~~~~L  261 (265)
                      |++||+.|
T Consensus       245 L~k~~~~L  252 (252)
T PF05176_consen  245 LWKCVKGL  252 (252)
T ss_pred             HHHHHhcC
Confidence            99999986

A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane

>KOG4614 consensus Inner membrane protein required for assembly of the F0 sector of ATP synthase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.8e-40  Score=289.83  Aligned_cols=245  Identities=26%  Similarity=0.279  Sum_probs=175.8

Q ss_pred             CchHHHHHhhhccccchh-------hhhhcCCCCCccchhccccccc-ccchhh------------hcChhHHH---HHH
Q 024610            1 MFRINRLINQTRASLITS-------KQLLTHEHKLFPQHYAQKSSTR-FLDIYQ------------LGNKQAVE---KER   57 (265)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~-f~~~~~------------~~~~e~~~---~rr   57 (265)
                      |-++||++.|. +..+-+       ....+|++ .++|+-+-+++.+ |++++.            ++|.|++.   +|.
T Consensus         2 a~~~~k~l~hp-~l~~kh~~~lfs~~~~~~~d~-ke~q~~aL~~p~gl~~~p~k~~~~~~~~~~r~~~~~e~t~~~~~r~   79 (287)
T KOG4614|consen    2 ATTLNKILKHP-SLLNKHHQGLFSLTRYENHDS-KESQMPALRSPTGLFLDPYKFGNKKAIEDERARLNDEMTRGYFARM   79 (287)
T ss_pred             ccchhhhhcch-HHHHHHHhhhhhcchhhccCc-cccccHHHhccchhhcchhhhccccccchHHHHhChhhccCHHHHH
Confidence            45789999994 444433       55778885 8999999887775 666554            55556664   888


Q ss_pred             HHHHHHHccchhHHHHHhhhcCCeeeeccCccccccccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEE
Q 024610           58 ARLADEMNRGYFADVAELKKHGGKIATANKIIIPALAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCL  137 (265)
Q Consensus        58 k~L~~e~~~~yf~D~~~~r~~~GK~f~ap~~l~ka~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l  137 (265)
                      |||..|++++..+|+..|+.++||+|++|++||++++|+.|||+.++.++|.--          +...++..|+++++++
T Consensus        80 KEl~~e~~kS~i~Df~~f~~~kGkLF~~p~~y~ke~~al~~~h~~g~a~r~~~~----------~~~kd~~~g~p~~~~l  149 (287)
T KOG4614|consen   80 KELKEEGGKSQIPDFVFFATLKGKLFSLPMAYIKEVRALLVMHDLGVACRDLIA----------AANKDIIPGFPVLAVL  149 (287)
T ss_pred             HHHHHhcccccCchhhHHhhhcCceeeccHHHHHHHhHhhhhhhhhhhHHHHHH----------HHHHhhccCCcEEEEe
Confidence            888888888888999999999999999999999999999999999555554432          2335567799999999


Q ss_pred             eeeccchHHHhhhcchhH----------Hhhcc---C-CCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccc
Q 024610          138 TFRASSQAMVDSWSSPFF----------EAFSD---S-KNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQR  203 (265)
Q Consensus       138 ~~~~~gq~~~~sw~~p~~----------e~~~~---~-~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~  203 (265)
                      |++++|+++.++|++...          +.+..   + -.+++++|++.++.++..  +.+ +...--.+++.     ++
T Consensus       150 FSna~g~kl~sn~vq~~~~~~~k~dyl~~~~a~~s~n~i~~w~~e~f~~~~~~~~~--~v~-~~~~W~~~~~~-----~~  221 (287)
T KOG4614|consen  150 FSNAKGLKLNSNEVQTESLVVPKVDYLCLSFAASSQNMISSWFLESFGNRKDLQLF--EVS-FIDKWLLGLAV-----LQ  221 (287)
T ss_pred             ecccccchhhhhhhhhccccccccceeeHHHhhhhhHHHHHHHHHHHcchhHhhhh--hhH-HHHHHHhhchh-----hc
Confidence            999999999999987322          11110   0 123333333333332221  111 01111112221     22


Q ss_pred             eeEEE----cCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHHHHHhhhcCC
Q 024610          204 QIVYS----FGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLSCTSLLLEGE  265 (265)
Q Consensus       204 ~~~y~----~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k~~~~Ll~e~  265 (265)
                      +..++    ..-.+++|++|-++|..+|||||||+.|||||+|||.|||+|+|.|++|++.|++++
T Consensus       222 ~pf~fe~s~~qw~f~~r~e~~~nN~l~GyV~L~D~s~kIRW~g~G~aTp~Eve~L~~~~k~L~~~~  287 (287)
T KOG4614|consen  222 KPFNFENSVLQWAFYFRKEIKVNNLLTGYVLLLDKSGKIRWQGFGTATPEEVEQLLSCTKLLLEDQ  287 (287)
T ss_pred             CCCCCcccccccchhhhhHHhhcceeeEEEEEEccCceEEEeecCCCCHHHHHHHHHHHHHHhcCC
Confidence            22221    122478999999999999999999999999999999999999999999999999875

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=98.98  E-value=6.4e-09  Score=85.10  Aligned_cols=115  Identities=22%  Similarity=0.216  Sum_probs=82.1

Q ss_pred             cccCCCceeeC--CCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhh-hcchhHH------hh---ccCC
Q 024610           95 AVKFPDLDVSY--SDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDS-WSSPFFE------AF---SDSK  162 (265)
Q Consensus        95 AlyFPnl~~~~--l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~s-w~~p~~e------~~---~~~~  162 (265)
                      +..+|++..++  ++|+++++.+            ++||+.||.+|         .+ ||.||..      .+   -...
T Consensus         3 G~~~P~~~~~~~~~~g~~~~l~~------------~~gk~~vv~f~---------~~~~Cp~C~~~~p~l~~l~~~~~~~   61 (146)
T PF08534_consen    3 GDKAPDFSLKDLDLDGKPVSLSD------------FKGKPVVVNFW---------ASAWCPPCRKELPYLNELQEKYKDK   61 (146)
T ss_dssp             TSB--CCEEEEEETTSEEEEGGG------------GTTSEEEEEEE---------STTTSHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCCCeEEEeecCCCCEecHHH------------hCCCeEEEEEE---------ccCCCCcchhhhhhHHhhhhhhccC
Confidence            45689999855  9999998653            46899888666         78 9999873      22   1345


Q ss_pred             CeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhccc--CC-----cccEEEEEeCC
Q 024610          163 NVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKIL--NL-----LTGYIFLLDKF  235 (265)
Q Consensus       163 ~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~--N~-----~vGYVyLVD~~  235 (265)
                      ++++|.|+..++..     +..+    +.+ .+.      ...+ ..+....+.+++|+.  -.     .++.+||||.+
T Consensus        62 ~v~~v~v~~~~~~~-----~~~~----~~~-~~~------~~~~-~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~  124 (146)
T PF08534_consen   62 GVDVVGVSSDDDPP-----VREF----LKK-YGI------NFPV-LSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKD  124 (146)
T ss_dssp             TCEEEEEEESSSHH-----HHHH----HHH-TTT------TSEE-EEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETT
T ss_pred             ceEEEEecccCCHH-----HHHH----HHh-hCC------CceE-EechHHHHHHHhCCccccccccCCeecEEEEEECC
Confidence            79999999987644     2333    222 111      1222 356778899999966  22     69999999999


Q ss_pred             CcEEEcccCCCC
Q 024610          236 GRIRWQGFGMAT  247 (265)
Q Consensus       236 grIRWagsG~at  247 (265)
                      |+|+|.+.|..+
T Consensus       125 G~V~~~~~g~~~  136 (146)
T PF08534_consen  125 GKVVYRHVGPDP  136 (146)
T ss_dssp             SBEEEEEESSBT
T ss_pred             CEEEEEEeCCCC
Confidence            999999999988

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=98.98  E-value=4.6e-09  Score=90.57  Aligned_cols=127  Identities=17%  Similarity=0.214  Sum_probs=86.6

Q ss_pred             ccccccCCCceeeCCCC--CeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh------hccCCC
Q 024610           92 ALAAVKFPDLDVSYSDR--TTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA------FSDSKN  163 (265)
Q Consensus        92 a~~AlyFPnl~~~~l~G--~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~------~~~~~~  163 (265)
                      ...+...|++.+.+++|  +++...           ...+||+.||.+|         ++||.||.+.      +.+ .+
T Consensus        39 ~~~g~~~p~f~l~~~~g~g~~~~~~-----------~~~~gk~vvv~Fw---------atwC~~C~~e~p~l~~l~~-~~   97 (185)
T PRK15412         39 ALIGKPVPKFRLESLENPGQFYQAD-----------VLTQGKPVLLNVW---------ATWCPTCRAEHQYLNQLSA-QG   97 (185)
T ss_pred             hhcCCCCCCcCCccCCCCCccccHH-----------HhcCCCEEEEEEE---------CCCCHHHHHHHHHHHHHHH-cC
Confidence            44566799999988885  444321           1225899888666         8999999843      332 47


Q ss_pred             eeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEccc
Q 024610          164 VHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGF  243 (265)
Q Consensus       164 vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWags  243 (265)
                      +++|-||+.++.-  .  ++.+ +..  .+.+        ..++..+....+-+++|+..  ++.+||+|++|+|+|...
T Consensus        98 ~~vi~v~~~~~~~--~--~~~~-~~~--~~~~--------~~~~~~D~~~~~~~~~gv~~--~P~t~vid~~G~i~~~~~  160 (185)
T PRK15412         98 IRVVGMNYKDDRQ--K--AISW-LKE--LGNP--------YALSLFDGDGMLGLDLGVYG--APETFLIDGNGIIRYRHA  160 (185)
T ss_pred             CEEEEEECCCCHH--H--HHHH-HHH--cCCC--------CceEEEcCCccHHHhcCCCc--CCeEEEECCCceEEEEEe
Confidence            9999999877532  1  2332 111  1222        22222466667778899876  899999999999999999


Q ss_pred             CCCCHHHHHHHHH
Q 024610          244 GMATPEELSSLLS  256 (265)
Q Consensus       244 G~at~~E~e~L~k  256 (265)
                      |.-++++++...+
T Consensus       161 G~~~~~~l~~~i~  173 (185)
T PRK15412        161 GDLNPRVWESEIK  173 (185)
T ss_pred             cCCCHHHHHHHHH
Confidence            9999988765443

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=98.91  E-value=1.8e-08  Score=87.82  Aligned_cols=138  Identities=17%  Similarity=0.133  Sum_probs=93.4

Q ss_pred             ccCCCceeeC-----CCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhH------HhhccCCCe
Q 024610           96 VKFPDLDVSY-----SDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFF------EAFSDSKNV  164 (265)
Q Consensus        96 lyFPnl~~~~-----l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~------e~~~~~~~v  164 (265)
                      ...|.+.+.+     ++|..++...       -....++|||-||-+|         ++||.||.      ++++. .++
T Consensus        27 ~~~p~v~~~~~ge~~~~~~~~~y~~-------~~~~~l~GKV~lvn~~---------Aswc~~c~~e~P~l~~l~~-~~~   89 (184)
T TIGR01626        27 QSVPSVGVSEYGEIVLSGKDTVYQP-------WGSAELAGKVRVVHHI---------AGRTSAKEXNASLIDAIKA-AKF   89 (184)
T ss_pred             CcCCceEecCCceEEEcCCccccee-------ccHHHcCCCEEEEEEE---------ecCCChhhccchHHHHHHH-cCC
Confidence            4567776654     3666665442       1234567999999887         99999876      34432 247


Q ss_pred             eE------EEEecccchh--hccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEE-EEEeCC
Q 024610          165 HL------YEVSFIDSWL--LCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYI-FLLDKF  235 (265)
Q Consensus       165 qi------v~In~~e~~l--k~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYV-yLVD~~  235 (265)
                      .+      +-||++|...  ..+  ++. |+.......|.      .. + .++....+..+.|+.-  .+.+ ||||++
T Consensus        90 ~~~~y~~t~~IN~dd~~~~~~~f--Vk~-fie~~~~~~P~------~~-v-llD~~g~v~~~~gv~~--~P~T~fVIDk~  156 (184)
T TIGR01626        90 PPVKYQTTTIINADDAIVGTGMF--VKS-SAKKGKKENPW------SQ-V-VLDDKGAVKNAWQLNS--EDSAIIVLDKT  156 (184)
T ss_pred             CcccccceEEEECccchhhHHHH--HHH-HHHHhcccCCc------ce-E-EECCcchHHHhcCCCC--CCceEEEECCC
Confidence            77      9999987532  111  111 22223333332      12 2 3577667888898764  7677 999999


Q ss_pred             CcEEEcccCCCCHHHHHHHHHHHHhhhc
Q 024610          236 GRIRWQGFGMATPEELSSLLSCTSLLLE  263 (265)
Q Consensus       236 grIRWagsG~at~~E~e~L~k~~~~Ll~  263 (265)
                      |+|++...|..+++|++.+...++.|+.
T Consensus       157 GkVv~~~~G~l~~ee~e~~~~li~~ll~  184 (184)
T TIGR01626       157 GKVKFVKEGALSDSDIQTVISLVNGLLK  184 (184)
T ss_pred             CcEEEEEeCCCCHHHHHHHHHHHHHHhC
Confidence            9999999999999999998888888874

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=98.86  E-value=2.3e-08  Score=80.06  Aligned_cols=116  Identities=22%  Similarity=0.273  Sum_probs=80.2

Q ss_pred             cCCCceeeCCCC--CeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH------hhccCCCeeEEE
Q 024610           97 KFPDLDVSYSDR--TTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE------AFSDSKNVHLYE  168 (265)
Q Consensus        97 yFPnl~~~~l~G--~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~~~~~~vqiv~  168 (265)
                      ..|+|.+.+++|  ++++..            .++||+.||.+|         ++||.+|.+      .+....++++|.
T Consensus         2 ~~p~f~~~~~~g~~~~~~~~------------~~~gk~vvv~F~---------a~~C~~C~~~~~~l~~l~~~~~~~vv~   60 (127)
T cd03010           2 PAPAFSLPALPGPDKTLTSA------------DLKGKPYLLNVW---------ASWCAPCREEHPVLMALARQGRVPIYG   60 (127)
T ss_pred             CCCCcccccccCCCccccHH------------HcCCCEEEEEEE---------cCcCHHHHHHHHHHHHHHHhcCcEEEE
Confidence            458898888888  555432            235899888666         899998873      344344699999


Q ss_pred             EecccchhhccccchHHHHHHHHh-cCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCC
Q 024610          169 VSFIDSWLLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMAT  247 (265)
Q Consensus       169 In~~e~~lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at  247 (265)
                      |++.++.-  .  ++.+    +.+ ..+        ...+..+....+-+.+++.-  ++.+|+||++|+|++...|..+
T Consensus        61 v~~~~~~~--~--~~~~----~~~~~~~--------~~~~~~D~~~~~~~~~~v~~--~P~~~~ld~~G~v~~~~~G~~~  122 (127)
T cd03010          61 INYKDNPE--N--ALAW----LARHGNP--------YAAVGFDPDGRVGIDLGVYG--VPETFLIDGDGIIRYKHVGPLT  122 (127)
T ss_pred             EECCCCHH--H--HHHH----HHhcCCC--------CceEEECCcchHHHhcCCCC--CCeEEEECCCceEEEEEeccCC
Confidence            99876432  1  2232    222 111        11122456677888888874  8999999999999999999998


Q ss_pred             HHHH
Q 024610          248 PEEL  251 (265)
Q Consensus       248 ~~E~  251 (265)
                      ++++
T Consensus       123 ~~~~  126 (127)
T cd03010         123 PEVW  126 (127)
T ss_pred             hHhc
Confidence            8765

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=98.84  E-value=1.2e-08  Score=80.65  Aligned_cols=108  Identities=22%  Similarity=0.238  Sum_probs=76.2

Q ss_pred             ccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhh-hcchhHHh-------hcc--CCCee
Q 024610           96 VKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDS-WSSPFFEA-------FSD--SKNVH  165 (265)
Q Consensus        96 lyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~s-w~~p~~e~-------~~~--~~~vq  165 (265)
                      ..+|++.+++.+|+++++.+            ++||++||.++         .+ ||..|.+.       ...  ..+++
T Consensus         3 ~~~P~f~l~~~~g~~~~l~~------------l~gk~~vl~f~---------~~~~c~~c~~~l~~l~~~~~~~~~~~~~   61 (124)
T PF00578_consen    3 DKAPDFTLTDSDGKTVSLSD------------LKGKPVVLFFW---------PTAWCPFCQAELPELNELYKKYKDKGVQ   61 (124)
T ss_dssp             SBGGCEEEETTTSEEEEGGG------------GTTSEEEEEEE---------STTTSHHHHHHHHHHHHHHHHHHTTTEE
T ss_pred             CCCCCcEeECCCCCEEEHHH------------HCCCcEEEEEe---------CccCccccccchhHHHHHhhhhccceEE
Confidence            46899999999999998653            26899999877         55 98887632       111  34899


Q ss_pred             EEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCC----cccEEEEEeCCCcEEEc
Q 024610          166 LYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNL----LTGYIFLLDKFGRIRWQ  241 (265)
Q Consensus       166 iv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~----~vGYVyLVD~~grIRWa  241 (265)
                      +|.|+.++.--     ++.+    +.. .+.      ...+ ..+....+.+.+|+.+.    .++.+||||++|+|||+
T Consensus        62 vi~is~d~~~~-----~~~~----~~~-~~~------~~~~-~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~~  124 (124)
T PF00578_consen   62 VIGISTDDPEE-----IKQF----LEE-YGL------PFPV-LSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRYA  124 (124)
T ss_dssp             EEEEESSSHHH-----HHHH----HHH-HTC------SSEE-EEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEEE
T ss_pred             eeecccccccc-----hhhh----hhh-hcc------cccc-ccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEeC
Confidence            99999976431     2222    111 111      1122 23556789999999954    79999999999999996

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=98.78  E-value=8.9e-08  Score=80.23  Aligned_cols=128  Identities=16%  Similarity=0.178  Sum_probs=89.8

Q ss_pred             ccccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh------h-cc--CC
Q 024610           92 ALAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA------F-SD--SK  162 (265)
Q Consensus        92 a~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~------~-~~--~~  162 (265)
                      ...+...|++.+.+++|+++++..            +.||+++|-++         ++||.+|...      . ++  ..
T Consensus        35 ~~~g~~~p~~~~~~~~g~~~~l~~------------~~~k~~~l~f~---------a~~C~~C~~~~~~l~~~~~~~~~~   93 (173)
T PRK03147         35 VQVGKEAPNFVLTDLEGKKIELKD------------LKGKGVFLNFW---------GTWCKPCEKEMPYMNELYPKYKEK   93 (173)
T ss_pred             cCCCCCCCCcEeecCCCCEEeHHH------------cCCCEEEEEEE---------CCcCHHHHHHHHHHHHHHHHhhcC
Confidence            445567999999999999987542            24788888555         8899988631      1 11  13


Q ss_pred             CeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcc
Q 024610          163 NVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQG  242 (265)
Q Consensus       163 ~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWag  242 (265)
                      +++++.|+.+++.-  .  +..+    +++ .+-      ...+ ..+....+.+.+|+..  ++.+||||++|+|++..
T Consensus        94 ~~~vi~i~~d~~~~--~--~~~~----~~~-~~~------~~~~-~~d~~~~~~~~~~v~~--~P~~~lid~~g~i~~~~  155 (173)
T PRK03147         94 GVEIIAVNVDETEL--A--VKNF----VNR-YGL------TFPV-AIDKGRQVIDAYGVGP--LPTTFLIDKDGKVVKVI  155 (173)
T ss_pred             CeEEEEEEcCCCHH--H--HHHH----HHH-hCC------CceE-EECCcchHHHHcCCCC--cCeEEEECCCCcEEEEE
Confidence            58999999986421  1  1222    222 111      1222 2466788999999975  89999999999999999


Q ss_pred             cCCCCHHHHHHHHHHH
Q 024610          243 FGMATPEELSSLLSCT  258 (265)
Q Consensus       243 sG~at~~E~e~L~k~~  258 (265)
                      .|..+++|++.+.+.+
T Consensus       156 ~g~~~~~~l~~~l~~~  171 (173)
T PRK03147        156 TGEMTEEQLEEYLEKI  171 (173)
T ss_pred             eCCCCHHHHHHHHHHh
Confidence            9999999987766544

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=98.78  E-value=1.1e-07  Score=80.86  Aligned_cols=127  Identities=14%  Similarity=0.138  Sum_probs=84.4

Q ss_pred             ccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH------hhccCCCeeEE
Q 024610           94 AAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE------AFSDSKNVHLY  167 (265)
Q Consensus        94 ~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~~~~~~vqiv  167 (265)
                      .....|+|.+.+++|++.....         ....+||+.||-++         ++||.+|.+      .+.+ .++++|
T Consensus        36 vG~~ap~f~l~~~~G~~~~~~~---------~~~~~gk~vll~F~---------a~wC~~C~~~~p~l~~l~~-~~~~vi   96 (173)
T TIGR00385        36 IGKPVPAFPLAALREPLQAYTP---------EAFIQGKPVLLNVW---------ASWCPPCRAEHPYLNELAK-DGLPIV   96 (173)
T ss_pred             cCCCCCCccccccCCCCcccCH---------HHhcCCCEEEEEEE---------CCcCHHHHHHHHHHHHHHH-cCCEEE
Confidence            3457899999999987433210         01125888888555         789999874      2333 369999


Q ss_pred             EEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCC
Q 024610          168 EVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMAT  247 (265)
Q Consensus       168 ~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at  247 (265)
                      .||+.+..- .   .+.+ ..  +.+.+        ...+..+....+-+.+++..  ++++|+||++|+|||..+|..+
T Consensus        97 ~V~~~~~~~-~---~~~~-~~--~~~~~--------f~~v~~D~~~~~~~~~~v~~--~P~~~~id~~G~i~~~~~G~~~  159 (173)
T TIGR00385        97 GVDYKDQSQ-N---ALKF-LK--ELGNP--------YQAILIDPNGKLGLDLGVYG--APETFLVDGNGVILYRHAGPLN  159 (173)
T ss_pred             EEECCCChH-H---HHHH-HH--HcCCC--------CceEEECCCCchHHhcCCee--CCeEEEEcCCceEEEEEeccCC
Confidence            999865421 1   1222 11  11222        11122455667888888876  8999999999999999999999


Q ss_pred             HHHHHHHHH
Q 024610          248 PEELSSLLS  256 (265)
Q Consensus       248 ~~E~e~L~k  256 (265)
                      .+|++....
T Consensus       160 ~~~l~~~l~  168 (173)
T TIGR00385       160 NEVWTEGFL  168 (173)
T ss_pred             HHHHHHHHH
Confidence            888766543

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=98.75  E-value=1.2e-07  Score=78.55  Aligned_cols=125  Identities=13%  Similarity=0.084  Sum_probs=83.0

Q ss_pred             cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhh-cchhH----------HhhccCCC
Q 024610           95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSW-SSPFF----------EAFSDSKN  163 (265)
Q Consensus        95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw-~~p~~----------e~~~~~~~  163 (265)
                      ....|+|.+.+++|+++++.+            ++||+.||.+|         .+| |..|.          +.+. ..+
T Consensus         7 g~~~p~f~l~~~~G~~~~l~~------------~~gk~~ll~f~---------~~~~~p~C~~~~~~l~~~~~~~~-~~~   64 (154)
T PRK09437          7 GDIAPKFSLPDQDGEQVSLTD------------FQGQRVLVYFY---------PKAMTPGCTVQACGLRDNMDELK-KAG   64 (154)
T ss_pred             CCcCCCcEeeCCCCCEEeHHH------------hCCCCEEEEEE---------CCCCCCchHHHHHHHHHHHHHHH-HCC
Confidence            466899999999999987642            36899888665         443 33343          2222 257


Q ss_pred             eeEEEEecccchhhccccchHHHHHHHHh-cCCCCCccccceeEEEcCChHHHHHHhcccCCc----------ccEEEEE
Q 024610          164 VHLYEVSFIDSWLLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGDHYYFRKELKILNLL----------TGYIFLL  232 (265)
Q Consensus       164 vqiv~In~~e~~lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~----------vGYVyLV  232 (265)
                      +++|.|++++.-   .  +..+    +.+ +.+        ..+ ..+....+-+++|+....          .+++|||
T Consensus        65 v~vi~Is~d~~~---~--~~~~----~~~~~~~--------~~~-l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~li  126 (154)
T PRK09437         65 VVVLGISTDKPE---K--LSRF----AEKELLN--------FTL-LSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLI  126 (154)
T ss_pred             CEEEEEcCCCHH---H--HHHH----HHHhCCC--------CeE-EECCCchHHHHhCCCcccccccccccCcceEEEEE
Confidence            999999986521   1  2332    222 222        122 235567788888876431          2578999


Q ss_pred             eCCCcEEEcccCCCCHHHHHHHHHHHH
Q 024610          233 DKFGRIRWQGFGMATPEELSSLLSCTS  259 (265)
Q Consensus       233 D~~grIRWagsG~at~~E~e~L~k~~~  259 (265)
                      |++|+||++..|+.++++.+.+.+.++
T Consensus       127 d~~G~i~~~~~g~~~~~~~~~~~~~~~  153 (154)
T PRK09437        127 DADGKIEHVFDKFKTSNHHDVVLDYLK  153 (154)
T ss_pred             CCCCEEEEEEcCCCcchhHHHHHHHHh
Confidence            999999999999998888776665543

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=98.70  E-value=1.5e-07  Score=81.56  Aligned_cols=126  Identities=17%  Similarity=0.143  Sum_probs=83.4

Q ss_pred             cccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh------hccCCCeeE
Q 024610           93 LAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA------FSDSKNVHL  166 (265)
Q Consensus        93 ~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~------~~~~~~vqi  166 (265)
                      +.+...|++.+++++|+++++...          ..+||++||.++         ++||.+|.+.      +.+..++++
T Consensus        47 ~vG~~aP~f~l~d~~G~~v~l~~~----------~~~gk~vvl~F~---------atwCp~C~~~lp~l~~~~~~~~~~v  107 (189)
T TIGR02661        47 DVGDAAPIFNLPDFDGEPVRIGGS----------IAPGRPTLLMFT---------APSCPVCDKLFPIIKSIARAEETDV  107 (189)
T ss_pred             CCCCcCCCcEecCCCCCEEeccch----------hcCCCEEEEEEE---------CCCChhHHHHHHHHHHHHHhcCCcE
Confidence            455679999999999999876321          135899888555         8999998742      334456788


Q ss_pred             EEEecccchhhccccchHHHHHHHHhc-CCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCC
Q 024610          167 YEVSFIDSWLLCRSPIKRILLKIMRKS-KDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGM  245 (265)
Q Consensus       167 v~In~~e~~lk~~~~lk~~~~~~lrk~-~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~  245 (265)
                      +-|+..+ .-  -  ...+    +++. ++        ...|  ....++-+.+|+..  ++++||+|++|+|||.|- .
T Consensus       108 v~Is~~~-~~--~--~~~~----~~~~~~~--------~~~~--~~~~~i~~~y~v~~--~P~~~lID~~G~I~~~g~-~  165 (189)
T TIGR02661       108 VMISDGT-PA--E--HRRF----LKDHELG--------GERY--VVSAEIGMAFQVGK--IPYGVLLDQDGKIRAKGL-T  165 (189)
T ss_pred             EEEeCCC-HH--H--HHHH----HHhcCCC--------ccee--echhHHHHhccCCc--cceEEEECCCCeEEEccC-C
Confidence            8888432 11  1  2222    2221 11        1112  12356778889875  899999999999999853 3


Q ss_pred             CCHHHHHHHHHHHH
Q 024610          246 ATPEELSSLLSCTS  259 (265)
Q Consensus       246 at~~E~e~L~k~~~  259 (265)
                      .+.++++.+...++
T Consensus       166 ~~~~~le~ll~~l~  179 (189)
T TIGR02661       166 NTREHLESLLEADR  179 (189)
T ss_pred             CCHHHHHHHHHHHH
Confidence            56677777776543

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=98.70  E-value=1.1e-07  Score=76.76  Aligned_cols=120  Identities=14%  Similarity=0.022  Sum_probs=81.3

Q ss_pred             cCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhH----------HhhccCCCeeE
Q 024610           97 KFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFF----------EAFSDSKNVHL  166 (265)
Q Consensus        97 yFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~----------e~~~~~~~vqi  166 (265)
                      .+|++.+++.+|+.+++.+            ++||+.||.+|.        .+||.+|.          +.+. ..++++
T Consensus         2 ~~p~f~l~~~~g~~~~l~~------------~~gk~~ll~f~~--------~~~cp~C~~~~~~l~~~~~~~~-~~~~~v   60 (140)
T cd03017           2 KAPDFTLPDQDGETVSLSD------------LRGKPVVLYFYP--------KDDTPGCTKEACDFRDLYEEFK-ALGAVV   60 (140)
T ss_pred             CCCCccccCCCCCEEeHHH------------hCCCcEEEEEeC--------CCCCCchHHHHHHHHHHHHHHH-HCCCEE
Confidence            5799999999999987653            358998885552        35555554          2233 257999


Q ss_pred             EEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCc-------ccEEEEEeCCCcEE
Q 024610          167 YEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLL-------TGYIFLLDKFGRIR  239 (265)
Q Consensus       167 v~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~-------vGYVyLVD~~grIR  239 (265)
                      |.|+++..-   .  +..+     .+..+.      ...+ ..+....+-+++|+....       .+.+||||++|+|+
T Consensus        61 v~is~d~~~---~--~~~~-----~~~~~~------~~~~-l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~  123 (140)
T cd03017          61 IGVSPDSVE---S--HAKF-----AEKYGL------PFPL-LSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIV  123 (140)
T ss_pred             EEEcCCCHH---H--HHHH-----HHHhCC------CceE-EECCccHHHHHhCCccccccccCCcceeEEEECCCCEEE
Confidence            999986421   1  2332     222221      1222 235567788999998731       17899999999999


Q ss_pred             EcccCCCCHHHHHHH
Q 024610          240 WQGFGMATPEELSSL  254 (265)
Q Consensus       240 WagsG~at~~E~e~L  254 (265)
                      +...|..++++++-.
T Consensus       124 ~~~~g~~~~~~~~~~  138 (140)
T cd03017         124 KVWRKVKPKGHAEEV  138 (140)
T ss_pred             EEEecCCccchHHHH
Confidence            999999988887643

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=98.67  E-value=1.9e-07  Score=76.21  Aligned_cols=117  Identities=17%  Similarity=0.142  Sum_probs=76.3

Q ss_pred             cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhh-cchhHH-------hhccCCCeeE
Q 024610           95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSW-SSPFFE-------AFSDSKNVHL  166 (265)
Q Consensus        95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw-~~p~~e-------~~~~~~~vqi  166 (265)
                      ....|+|.+.+.+|+++++.+            ++||++||.+|         .+| |.+|..       ..++.+++++
T Consensus         3 G~~aP~f~l~~~~g~~~~l~~------------~~gk~vvl~f~---------~~~~c~~C~~e~~~l~~~~~~~~~~~v   61 (143)
T cd03014           3 GDKAPDFTLVTSDLSEVSLAD------------FAGKVKVISVF---------PSIDTPVCATQTKRFNKEAAKLDNTVV   61 (143)
T ss_pred             CCCCCCcEEECCCCcEEeHHH------------hCCCeEEEEEE---------cCCCCCcCHHHHHHHHHHHHhcCCCEE
Confidence            457899999999999987642            36898888655         677 455652       2344468999


Q ss_pred             EEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCCh-HHHHHHhcccCC----cccEEEEEeCCCcEEEc
Q 024610          167 YEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDH-YYFRKELKILNL----LTGYIFLLDKFGRIRWQ  241 (265)
Q Consensus       167 v~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~-~~iRe~Lgi~N~----~vGYVyLVD~~grIRWa  241 (265)
                      |.||+++...     ...+     .+..+..     ...+ ..+.. ..+-+++|+.-.    ....+||||++|+|||.
T Consensus        62 i~Is~d~~~~-----~~~~-----~~~~~~~-----~~~~-l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~  125 (143)
T cd03014          62 LTISADLPFA-----QKRW-----CGAEGVD-----NVTT-LSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYV  125 (143)
T ss_pred             EEEECCCHHH-----HHHH-----HHhcCCC-----CceE-eecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEE
Confidence            9999876321     1222     2222211     1112 12433 678888888532    24689999999999999


Q ss_pred             ccCCCCH
Q 024610          242 GFGMATP  248 (265)
Q Consensus       242 gsG~at~  248 (265)
                      .-|+...
T Consensus       126 ~~~~~~~  132 (143)
T cd03014         126 ELVPEIT  132 (143)
T ss_pred             EECCCcc
Confidence            9887543

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=98.65  E-value=2.1e-07  Score=75.10  Aligned_cols=114  Identities=16%  Similarity=0.140  Sum_probs=77.0

Q ss_pred             cCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCCeeE
Q 024610           97 KFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKNVHL  166 (265)
Q Consensus        97 yFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~vqi  166 (265)
                      ++|++.+.+++|+++++.+            ++||++||.++.        .+||.+|..          .+. ..++++
T Consensus         1 ~~p~f~l~~~~g~~~~l~~------------~~gk~~ll~f~~--------~~~c~~C~~~~~~l~~~~~~~~-~~~~~~   59 (140)
T cd02971           1 KAPDFTLPATDGGEVSLSD------------FKGKWVVLFFYP--------KDFTPVCTTELCAFRDLAEEFA-KGGAEV   59 (140)
T ss_pred             CCCCceeccCCCcEEehHH------------hCCCeEEEEEeC--------CCCCCcCHHHHHHHHHHHHHHH-HCCCEE
Confidence            4799999999999998653            258989885552        457665542          232 357999


Q ss_pred             EEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCc-------ccEEEEEeCCCcEE
Q 024610          167 YEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLL-------TGYIFLLDKFGRIR  239 (265)
Q Consensus       167 v~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~-------vGYVyLVD~~grIR  239 (265)
                      |.|+.++...     ++.+     .+..+.     ....+ ..+....+.+.+|+....       .+++||||++|+|+
T Consensus        60 i~is~d~~~~-----~~~~-----~~~~~~-----~~~~~-l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~  123 (140)
T cd02971          60 LGVSVDSPFS-----HKAW-----AEKEGG-----LNFPL-LSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIR  123 (140)
T ss_pred             EEEeCCCHHH-----HHHH-----HhcccC-----CCceE-EECCChHHHHHcCCccccccccCceeEEEEEECCCCcEE
Confidence            9999865211     2222     233311     11222 235567899999998642       45899999999999


Q ss_pred             EcccCCCC
Q 024610          240 WQGFGMAT  247 (265)
Q Consensus       240 WagsG~at  247 (265)
                      +++.|.-.
T Consensus       124 ~~~~~~~~  131 (140)
T cd02971         124 YVEVEPLP  131 (140)
T ss_pred             EEEecCCC
Confidence            99999865

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>PTZ00056 glutathione peroxidase; Provisional

Probab=98.61  E-value=3.2e-07  Score=80.45  Aligned_cols=61  Identities=13%  Similarity=0.043  Sum_probs=44.9

Q ss_pred             cccccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh------h-c--cC
Q 024610           91 PALAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA------F-S--DS  161 (265)
Q Consensus        91 ka~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~------~-~--~~  161 (265)
                      +.+.+..+|++.+.+++|+++++.+            ++||+.||.+|         +|||.||.+.      + .  ..
T Consensus        12 ~~~~~~~~pdf~l~d~~G~~vsL~~------------~kGkvvlv~fw---------AswC~~C~~e~p~L~~l~~~~~~   70 (199)
T PTZ00056         12 KDELRKSIYDYTVKTLEGTTVPMSS------------LKNKVLMITNS---------ASKCGLTKKHVDQMNRLHSVFNP   70 (199)
T ss_pred             chhcCCCCCceEEECCCCCEEeHHH------------hCCCEEEEEEE---------CCCCCChHHHHHHHHHHHHHHhc
Confidence            3445567899999999999987653            36898888555         8999998731      1 1  12


Q ss_pred             CCeeEEEEecc
Q 024610          162 KNVHLYEVSFI  172 (265)
Q Consensus       162 ~~vqiv~In~~  172 (265)
                      .++++|.||..
T Consensus        71 ~g~~vvgv~~~   81 (199)
T PTZ00056         71 LGLEILAFPTS   81 (199)
T ss_pred             CceEEEEecch
Confidence            46999999974

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=98.60  E-value=3.6e-07  Score=72.35  Aligned_cols=113  Identities=17%  Similarity=0.104  Sum_probs=79.4

Q ss_pred             CCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH------hhccCCCeeEEEEecc
Q 024610           99 PDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE------AFSDSKNVHLYEVSFI  172 (265)
Q Consensus        99 Pnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~~~~~~vqiv~In~~  172 (265)
                      |++.+++++|+.++...            +.||++||.++         .+||.+|..      .+.+.  ++++.|+++
T Consensus         1 p~f~l~~~~g~~~~~~~------------~~~k~~vl~F~---------~~~C~~C~~~~~~l~~~~~~--~~~i~i~~~   57 (123)
T cd03011           1 PLFTATTLDGEQFDLES------------LSGKPVLVYFW---------ATWCPVCRFTSPTVNQLAAD--YPVVSVALR   57 (123)
T ss_pred             CCceeecCCCCEeeHHH------------hCCCEEEEEEE---------CCcChhhhhhChHHHHHHhh--CCEEEEEcc
Confidence            78889999999887542            25788888666         789998873      23333  788889886


Q ss_pred             cchhhccccchHHHHHHHHh-cCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHH
Q 024610          173 DSWLLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEEL  251 (265)
Q Consensus       173 e~~lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~  251 (265)
                      ++-...   +..+    +++ .++        ..+ ..+....+.+.+++..  ++++||+|++| ||+...|.++++++
T Consensus        58 ~~~~~~---~~~~----~~~~~~~--------~~~-~~d~~~~~~~~~~i~~--~P~~~vid~~g-i~~~~~g~~~~~~~  118 (123)
T cd03011          58 SGDDGA---VARF----MQKKGYG--------FPV-INDPDGVISARWGVSV--TPAIVIVDPGG-IVFVTTGVTSEWGL  118 (123)
T ss_pred             CCCHHH---HHHH----HHHcCCC--------ccE-EECCCcHHHHhCCCCc--ccEEEEEcCCC-eEEEEeccCCHHHH
Confidence            531111   2222    222 122        111 2366678999999976  99999999988 99999999999998


Q ss_pred             HH
Q 024610          252 SS  253 (265)
Q Consensus       252 e~  253 (265)
                      ..
T Consensus       119 ~~  120 (123)
T cd03011         119 RL  120 (123)
T ss_pred             Hh
Confidence            54

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=98.59  E-value=4.9e-07  Score=73.89  Aligned_cols=114  Identities=11%  Similarity=0.122  Sum_probs=76.1

Q ss_pred             cccCCCceeeCCCCCeeeccCCCCCCccCccccCCC-ceEEEEEeeeccchHHHhhhcchhHH----------hhccCCC
Q 024610           95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIP-KVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKN  163 (265)
Q Consensus        95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~g-KvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~  163 (265)
                      ....|++.+.+.+|+++++.+            ++| |+.||.++ +       .+||.+|..          .+. ..+
T Consensus         4 G~~~p~~~l~~~~g~~v~l~~------------~~g~k~~vl~f~-~-------~~~c~~C~~~~~~l~~~~~~~~-~~~   62 (149)
T cd03018           4 GDKAPDFELPDQNGQEVRLSE------------FRGRKPVVLVFF-P-------LAFTPVCTKELCALRDSLELFE-AAG   62 (149)
T ss_pred             CCcCCCcEecCCCCCEEeHHH------------HcCCCeEEEEEe-C-------CCCCccHHHHHHHHHHHHHHHH-hCC
Confidence            467899999999999987653            346 88777554 2       688888762          222 247


Q ss_pred             eeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCCh--HHHHHHhcccCCc----ccEEEEEeCCCc
Q 024610          164 VHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDH--YYFRKELKILNLL----TGYIFLLDKFGR  237 (265)
Q Consensus       164 vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~--~~iRe~Lgi~N~~----vGYVyLVD~~gr  237 (265)
                      +++|.|+.++--.     ++.+    +++ .+.      +..+ ..+..  ..+-+.+|+....    ...+||||++|+
T Consensus        63 v~vi~vs~d~~~~-----~~~~----~~~-~~~------~~~~-~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~  125 (149)
T cd03018          63 AEVLGISVDSPFS-----LRAW----AEE-NGL------TFPL-LSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGI  125 (149)
T ss_pred             CEEEEecCCCHHH-----HHHH----HHh-cCC------CceE-ecCCCchhHHHHHhCCccccCCCccceEEEECCCCE
Confidence            9999999865211     2332    122 121      1222 13434  5677888887432    348899999999


Q ss_pred             EEEcccCCC
Q 024610          238 IRWQGFGMA  246 (265)
Q Consensus       238 IRWagsG~a  246 (265)
                      |||...|..
T Consensus       126 v~~~~~~~~  134 (149)
T cd03018         126 IRYAWVSDD  134 (149)
T ss_pred             EEEEEecCC
Confidence            999999986

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=98.58  E-value=5.3e-07  Score=76.14  Aligned_cols=132  Identities=20%  Similarity=0.182  Sum_probs=81.9

Q ss_pred             ccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCCee
Q 024610           96 VKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKNVH  165 (265)
Q Consensus        96 lyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~vq  165 (265)
                      ..+|++.+.+.+|+++++.+.           ..|+++||-++         .+||.+|..          .++ ..+++
T Consensus         2 ~~~p~f~l~~~~g~~v~l~~~-----------~~~k~~ll~f~---------~t~Cp~c~~~~~~l~~l~~~~~-~~~v~   60 (171)
T cd02969           2 SPAPDFSLPDTDGKTYSLADF-----------ADGKALVVMFI---------CNHCPYVKAIEDRLNRLAKEYG-AKGVA   60 (171)
T ss_pred             CcCCCccccCCCCCEEeHHHH-----------hCCCEEEEEEE---------CCCCccHHHHHHHHHHHHHHHh-hCCeE
Confidence            368999999999998875431           15788888555         789987652          222 24799


Q ss_pred             EEEEecccch-----hhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEE
Q 024610          166 LYEVSFIDSW-----LLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRW  240 (265)
Q Consensus       166 iv~In~~e~~-----lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRW  240 (265)
                      +|.|++++..     ....  ++.+     .+..+.      ... +..+....+-+.+|+..  ++++||||++|||+|
T Consensus        61 ~v~is~d~~~~~~~d~~~~--~~~~-----~~~~~~------~~~-~l~D~~~~~~~~~~v~~--~P~~~lid~~G~v~~  124 (171)
T cd02969          61 VVAINSNDIEAYPEDSPEN--MKAK-----AKEHGY------PFP-YLLDETQEVAKAYGAAC--TPDFFLFDPDGKLVY  124 (171)
T ss_pred             EEEEecCccccccccCHHH--HHHH-----HHHCCC------Cce-EEECCchHHHHHcCCCc--CCcEEEECCCCeEEE
Confidence            9999986521     0011  2222     111221      111 22466678889999975  899999999999999


Q ss_pred             ccc------CCCCHHHHHHHHHHHHhhhcC
Q 024610          241 QGF------GMATPEELSSLLSCTSLLLEG  264 (265)
Q Consensus       241 ags------G~at~~E~e~L~k~~~~Ll~e  264 (265)
                      .+-      |+..+...+.+...++.++.+
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~  154 (171)
T cd02969         125 RGRIDDSRPGNDPPVTGRDLRAALDALLAG  154 (171)
T ss_pred             eecccCCcccccccccHHHHHHHHHHHHcC
Confidence            852      111222334455555555543

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>PLN02412 probable glutathione peroxidase

Probab=98.56  E-value=9.3e-07  Score=75.15  Aligned_cols=137  Identities=14%  Similarity=0.093  Sum_probs=80.7

Q ss_pred             cccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCC
Q 024610           93 LAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSK  162 (265)
Q Consensus        93 ~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~  162 (265)
                      +.+..+|++.+.+++|+++++.+            ++||+.||.+|         ++||.+|.+          .+.+ .
T Consensus         4 ~~~~~~pdf~l~d~~G~~v~l~~------------~~gk~vlv~f~---------a~~C~~c~~e~~~l~~l~~~~~~-~   61 (167)
T PLN02412          4 ESPKSIYDFTVKDIGGNDVSLNQ------------YKGKVLLIVNV---------ASKCGLTDSNYKELNVLYEKYKE-Q   61 (167)
T ss_pred             ccCCCCCceEEECCCCCEEeHHH------------hCCCEEEEEEe---------CCCCCChHHHHHHHHHHHHHHhh-C
Confidence            44578999999999999987653            36899888666         899998873          2222 3


Q ss_pred             CeeEEEEecccchh---hccccchHHHHHHHHhcCCCCCccccceeEEE----cC-Ch----HHHHHHh-cccC---Ccc
Q 024610          163 NVHLYEVSFIDSWL---LCRSPIKRILLKIMRKSKDAGENVLQRQIVYS----FG-DH----YYFRKEL-KILN---LLT  226 (265)
Q Consensus       163 ~vqiv~In~~e~~l---k~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~----~g-~~----~~iRe~L-gi~N---~~v  226 (265)
                      ++++|.||.++.--   ...--+...+.    +...-.      ..++.    -| ..    ..++... +...   .-.
T Consensus        62 g~~vvgv~~~~~~~~~~~~~~~~~~~~~----~~~~~~------fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~  131 (167)
T PLN02412         62 GFEILAFPCNQFLGQEPGSNEEIQQTVC----TRFKAE------FPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWN  131 (167)
T ss_pred             CcEEEEecccccccCCCCCHHHHHHHHH----HccCCC------CceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCC
Confidence            69999999753100   00000222221    111111      11111    11 11    1122221 1111   114


Q ss_pred             cEEEEEeCCCcEEEcccCCCCHHHHHHHHHHHHhhhcC
Q 024610          227 GYIFLLDKFGRIRWQGFGMATPEELSSLLSCTSLLLEG  264 (265)
Q Consensus       227 GYVyLVD~~grIRWagsG~at~~E~e~L~k~~~~Ll~e  264 (265)
                      +++||||.+|+|++.-.|..++++++   +.++.||++
T Consensus       132 p~tflId~~G~vv~~~~g~~~~~~l~---~~i~~~l~~  166 (167)
T PLN02412        132 FTKFLVSKEGKVVQRYAPTTSPLKIE---KDIQNLLGQ  166 (167)
T ss_pred             CeeEEECCCCcEEEEECCCCCHHHHH---HHHHHHHhh
Confidence            68999999999999999999988754   456666654

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=98.56  E-value=1.8e-07  Score=77.80  Aligned_cols=121  Identities=17%  Similarity=0.104  Sum_probs=71.2

Q ss_pred             CCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCCeeEE
Q 024610           98 FPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKNVHLY  167 (265)
Q Consensus        98 FPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~vqiv  167 (265)
                      +|++.+.+++|+++++.+            ++||+.||.+|         ++||. |..          .++ ..++++|
T Consensus         2 ~~~f~l~d~~G~~v~l~~------------~~Gk~vvl~fw---------atwC~-C~~e~p~l~~l~~~~~-~~~~~vv   58 (152)
T cd00340           2 IYDFSVKDIDGEPVSLSK------------YKGKVLLIVNV---------ASKCG-FTPQYEGLEALYEKYK-DRGLVVL   58 (152)
T ss_pred             cceeEEECCCCCEEeHHH------------hCCCEEEEEEE---------cCCCC-chHHHHHHHHHHHHhc-CCCEEEE
Confidence            689999999999987653            36898887555         89998 763          222 2469999


Q ss_pred             EEecccc--h---hhccccchHHHHHHHHhcCCCCCccccceeEEEc-C-ChHHHHHHhcccCCc--------cc---EE
Q 024610          168 EVSFIDS--W---LLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSF-G-DHYYFRKELKILNLL--------TG---YI  229 (265)
Q Consensus       168 ~In~~e~--~---lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~-g-~~~~iRe~Lgi~N~~--------vG---YV  229 (265)
                      .||..+.  .   -...  ++.+    +.+..+-.      ..++.- + +.....+.++.....        ++   .+
T Consensus        59 ~v~~~~~~~~~~~~~~~--~~~f----~~~~~~~~------fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~tt  126 (152)
T cd00340          59 GFPCNQFGGQEPGSNEE--IKEF----CETNYGVT------FPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTK  126 (152)
T ss_pred             EeccCccccCCCCCHHH--HHHH----HHHhcCCC------ceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEE
Confidence            9997531  0   0001  2333    22211111      122110 0 111112222221111        11   69


Q ss_pred             EEEeCCCcEEEcccCCCCHHHHHH
Q 024610          230 FLLDKFGRIRWQGFGMATPEELSS  253 (265)
Q Consensus       230 yLVD~~grIRWagsG~at~~E~e~  253 (265)
                      ||||++|+|+|+..|..+++|++.
T Consensus       127 flId~~G~i~~~~~G~~~~~~l~~  150 (152)
T cd00340         127 FLVDRDGEVVKRFAPTTDPEELEK  150 (152)
T ss_pred             EEECCCCcEEEEECCCCCHHHHHh
Confidence            999999999999999999988764

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=98.52  E-value=4.6e-07  Score=73.34  Aligned_cols=112  Identities=16%  Similarity=0.099  Sum_probs=72.2

Q ss_pred             CCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcch-hH----------HhhccC--CCe
Q 024610           98 FPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSP-FF----------EAFSDS--KNV  164 (265)
Q Consensus        98 FPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p-~~----------e~~~~~--~~v  164 (265)
                      +|++.+.+.+|+++++.+            ++||++||.++         .+||.+ |.          +.+.+.  .++
T Consensus         2 ~p~f~l~~~~g~~~~l~~------------~~gk~~vl~f~---------~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v   60 (142)
T cd02968           2 GPDFTLTDQDGRPVTLSD------------LKGKPVLVYFG---------YTHCPDVCPTTLANLAQALKQLGADGGDDV   60 (142)
T ss_pred             CCceEEEcCCCCEEchHH------------hCCCEEEEEEE---------cCCCcccCHHHHHHHHHHHHHhhHhhcCce
Confidence            699999999999987542            25899888665         889987 75          234443  369


Q ss_pred             eEEEEecccch-hhccccchHHHHHHHHhcCCCCCccccceeEEEcCC---hHHHHHHhcccCCc------------ccE
Q 024610          165 HLYEVSFIDSW-LLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGD---HYYFRKELKILNLL------------TGY  228 (265)
Q Consensus       165 qiv~In~~e~~-lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~---~~~iRe~Lgi~N~~------------vGY  228 (265)
                      +++.|+++... ....  ++.+    +.+ .+..    + ..+  .++   ...+-+++|+....            ++.
T Consensus        61 ~~v~vs~d~~~d~~~~--~~~~----~~~-~~~~----~-~~l--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  126 (142)
T cd02968          61 QVVFISVDPERDTPEV--LKAY----AKA-FGPG----W-IGL--TGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAA  126 (142)
T ss_pred             EEEEEEECCCCCCHHH--HHHH----HHH-hCCC----c-EEE--ECCHHHHHHHHHHhcEEEEecCCCCCceeEeccce
Confidence            99999997531 1011  2222    111 2211    1 112  233   36788899976543            467


Q ss_pred             EEEEeCCCcEEEcccC
Q 024610          229 IFLLDKFGRIRWQGFG  244 (265)
Q Consensus       229 VyLVD~~grIRWagsG  244 (265)
                      +||||++|+|+++-.|
T Consensus       127 ~~lid~~G~i~~~~~~  142 (142)
T cd02968         127 IYLVDPDGKLVRYYGG  142 (142)
T ss_pred             EEEECCCCCEEEeecC
Confidence            9999999999997543

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=98.52  E-value=1.5e-06  Score=73.84  Aligned_cols=128  Identities=13%  Similarity=0.126  Sum_probs=80.5

Q ss_pred             ccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhh-cchhHH-------hhccCCCee
Q 024610           94 AAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSW-SSPFFE-------AFSDSKNVH  165 (265)
Q Consensus        94 ~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw-~~p~~e-------~~~~~~~vq  165 (265)
                      .....|++.+.+.+|+++++.+            ++||+.||.+|         .+| |.+|..       ...+..+++
T Consensus        20 ~G~~~P~f~l~~~~g~~v~l~~------------~~Gk~vvl~f~---------~s~~cp~C~~e~~~l~~~~~~~~~~~   78 (167)
T PRK00522         20 VGDKAPDFTLVANDLSDVSLAD------------FAGKRKVLNIF---------PSIDTGVCATSVRKFNQEAAELDNTV   78 (167)
T ss_pred             CCCCCCCeEEEcCCCcEEehHH------------hCCCEEEEEEE---------cCCCCCccHHHHHHHHHHHHHcCCcE
Confidence            4677899999999999987542            36898888665         788 677763       222325899


Q ss_pred             EEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcC-ChHHHHHHhcccCCc-------ccEEEEEeCCCc
Q 024610          166 LYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFG-DHYYFRKELKILNLL-------TGYIFLLDKFGR  237 (265)
Q Consensus       166 iv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g-~~~~iRe~Lgi~N~~-------vGYVyLVD~~gr  237 (265)
                      +|.||.++-.-     .+.+     .+..+-     . +.....+ ....+-+++|+.-.-       ...+||||++|+
T Consensus        79 vv~vs~D~~~~-----~~~f-----~~~~~~-----~-~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~  142 (167)
T PRK00522         79 VLCISADLPFA-----QKRF-----CGAEGL-----E-NVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNK  142 (167)
T ss_pred             EEEEeCCCHHH-----HHHH-----HHhCCC-----C-CceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCe
Confidence            99999875321     2222     121111     1 1111234 234788899985311       128999999999


Q ss_pred             EEEcccCC--CCHHHHHHHHHHH
Q 024610          238 IRWQGFGM--ATPEELSSLLSCT  258 (265)
Q Consensus       238 IRWagsG~--at~~E~e~L~k~~  258 (265)
                      ||+...++  ....+.+.+.+.+
T Consensus       143 I~~~~~~~~~~~~~~~~~~l~~l  165 (167)
T PRK00522        143 VVYSELVPEITNEPDYDAALAAL  165 (167)
T ss_pred             EEEEEECCCcCCCCCHHHHHHHh
Confidence            99999664  3334455555443

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=98.49  E-value=1.4e-06  Score=86.65  Aligned_cols=128  Identities=13%  Similarity=0.093  Sum_probs=88.5

Q ss_pred             ccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh------h-cc--CCCeeE
Q 024610           96 VKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA------F-SD--SKNVHL  166 (265)
Q Consensus        96 lyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~------~-~~--~~~vqi  166 (265)
                      ...|+|.+.+++|+++.+.              +||+.||-+|         ++||.||...      + ..  .+++++
T Consensus        36 ~~lP~f~l~D~dG~~v~ls--------------kGKpVvV~FW---------ATWCppCk~emP~L~eL~~e~k~~~v~V   92 (521)
T PRK14018         36 HTLSTLKTADNRPASVYLK--------------KDKPTLIKFW---------ASWCPLCLSELGETEKWAQDAKFSSANL   92 (521)
T ss_pred             CCCCCeEeecCCCceeecc--------------CCCEEEEEEE---------cCCCHHHHHHHHHHHHHHHHhccCCeEE
Confidence            3589999999999998642              4899999766         9999998842      2 22  247999


Q ss_pred             EEEecccchh-hccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCC
Q 024610          167 YEVSFIDSWL-LCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGM  245 (265)
Q Consensus       167 v~In~~e~~l-k~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~  245 (265)
                      |.|++.+.-- +...-++.+    + +.++..     ...+ .++....+-+.+++.-  +|.+||||++|+|++...|+
T Consensus        93 I~Vs~~~~~~e~~~~~~~~~----~-~~~~y~-----~~pV-~~D~~~~lak~fgV~g--iPTt~IIDkdGkIV~~~~G~  159 (521)
T PRK14018         93 ITVASPGFLHEKKDGDFQKW----Y-AGLDYP-----KLPV-LTDNGGTLAQSLNISV--YPSWAIIGKDGDVQRIVKGS  159 (521)
T ss_pred             EEEecccccccccHHHHHHH----H-HhCCCc-----ccce-eccccHHHHHHcCCCC--cCeEEEEcCCCeEEEEEeCC
Confidence            9998732100 000002222    1 122210     0112 2466678889999874  99999999999999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 024610          246 ATPEELSSLLSCTS  259 (265)
Q Consensus       246 at~~E~e~L~k~~~  259 (265)
                      .+.+|++.+.+-++
T Consensus       160 ~~~eeL~a~Ie~~~  173 (521)
T PRK14018        160 ISEAQALALIRNPN  173 (521)
T ss_pred             CCHHHHHHHHHHhh
Confidence            99999998887554

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=98.46  E-value=1.7e-06  Score=73.48  Aligned_cols=119  Identities=16%  Similarity=0.078  Sum_probs=74.6

Q ss_pred             ccCCCceeeCCCC----CeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhH----------HhhccC
Q 024610           96 VKFPDLDVSYSDR----TTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFF----------EAFSDS  161 (265)
Q Consensus        96 lyFPnl~~~~l~G----~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~----------e~~~~~  161 (265)
                      ...|+|.+.+.+|    +++++.+            ++||+.||.++.        .+||.+|.          +.|.+ 
T Consensus         3 ~~aP~f~~~~~~g~~~~~~~~l~~------------~~Gk~vvl~F~~--------~~~c~~C~~~l~~l~~~~~~~~~-   61 (173)
T cd03015           3 KKAPDFKATAVVPNGEFKEISLSD------------YKGKWVVLFFYP--------LDFTFVCPTEIIAFSDRYEEFKK-   61 (173)
T ss_pred             CcCCCCEeecccCCCCceEEehHH------------hCCCEEEEEEEC--------CCCCCcCHHHHHHHHHHHHHHHH-
Confidence            4679999998887    6766532            368988885542        57877765          23332 


Q ss_pred             CCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCC----cccEEEEEeCCCc
Q 024610          162 KNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNL----LTGYIFLLDKFGR  237 (265)
Q Consensus       162 ~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~----~vGYVyLVD~~gr  237 (265)
                      .++++|.|++++...     ... +.....+......   ....+ ..+....+-+.+|+...    ..+.+||||++|+
T Consensus        62 ~~v~vv~Is~d~~~~-----~~~-~~~~~~~~~~~~~---~~f~~-l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~  131 (173)
T cd03015          62 LNAEVLGVSTDSHFS-----HLA-WRNTPRKEGGLGK---INFPL-LADPKKKISRDYGVLDEEEGVALRGTFIIDPEGI  131 (173)
T ss_pred             CCCEEEEEecCCHHH-----HHH-HHHhhhhhCCccC---cceeE-EECCchhHHHHhCCccccCCceeeEEEEECCCCe
Confidence            579999999876421     111 1222222100000   01112 24666788899998743    4568999999999


Q ss_pred             EEEcccCC
Q 024610          238 IRWQGFGM  245 (265)
Q Consensus       238 IRWagsG~  245 (265)
                      |+|...+.
T Consensus       132 I~~~~~~~  139 (173)
T cd03015         132 IRHITVND  139 (173)
T ss_pred             EEEEEecC
Confidence            99999765

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=98.45  E-value=1.1e-06  Score=71.23  Aligned_cols=112  Identities=16%  Similarity=0.104  Sum_probs=73.2

Q ss_pred             CCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHhh-------cc--CCCeeEEE
Q 024610           98 FPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEAF-------SD--SKNVHLYE  168 (265)
Q Consensus        98 FPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~~-------~~--~~~vqiv~  168 (265)
                      .|++.+.+++|+++++.+.           ..++..||. +++       .+||.+|.+..       .+  ..++++|.
T Consensus         2 ~p~f~l~~~~g~~~~l~~~-----------~~~~~~vl~-f~~-------~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~   62 (149)
T cd02970           2 APDFELPDAGGETVTLSAL-----------LGEGPVVVV-FYR-------GFGCPFCREYLRALSKLLPELDALGVELVA   62 (149)
T ss_pred             CCCccccCCCCCEEchHHH-----------hcCCCEEEE-EEC-------CCCChhHHHHHHHHHHHHHHHHhcCeEEEE
Confidence            6999999999999875422           124555554 344       78999887421       11  25799999


Q ss_pred             EecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccC-------------------------
Q 024610          169 VSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILN-------------------------  223 (265)
Q Consensus       169 In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N-------------------------  223 (265)
                      |+.++.-.     ...     ..+....      ...+ ..+....+-+++|+..                         
T Consensus        63 V~~~~~~~-----~~~-----~~~~~~~------~~p~-~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (149)
T cd02970          63 VGPESPEK-----LEA-----FDKGKFL------PFPV-YADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEG  125 (149)
T ss_pred             EeCCCHHH-----HHH-----HHHhcCC------CCeE-EECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCC
Confidence            99876321     111     1222221      1223 2466678889999842                         


Q ss_pred             --CcccEEEEEeCCCcEEEcccCC
Q 024610          224 --LLTGYIFLLDKFGRIRWQGFGM  245 (265)
Q Consensus       224 --~~vGYVyLVD~~grIRWagsG~  245 (265)
                        .-.|-+||||++|+|||.+-|.
T Consensus       126 ~~~~~p~~fvid~~g~i~~~~~~~  149 (149)
T cd02970         126 DGLQLPGVFVIGPDGTILFAHVDR  149 (149)
T ss_pred             cccccceEEEECCCCeEEEEecCC
Confidence              3589999999999999998773

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>PTZ00256 glutathione peroxidase; Provisional

Probab=98.42  E-value=2.3e-06  Score=73.68  Aligned_cols=134  Identities=16%  Similarity=0.179  Sum_probs=76.2

Q ss_pred             cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh----------hccCCCe
Q 024610           95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA----------FSDSKNV  164 (265)
Q Consensus        95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~----------~~~~~~v  164 (265)
                      +..+|+|.+++++|+++++.+            ++||+.||.++ |       +|||.||.+.          +. ..++
T Consensus        17 ~~~~p~f~l~d~~G~~vsLs~------------~~Gk~vvlv~n-~-------atwCp~C~~e~p~l~~l~~~~~-~~gv   75 (183)
T PTZ00256         17 TKSFFEFEAIDIDGQLVQLSK------------FKGKKAIIVVN-V-------ACKCGLTSDHYTQLVELYKQYK-SQGL   75 (183)
T ss_pred             CCcccceEeEcCCCCEEeHHH------------hCCCcEEEEEE-E-------CCCCCchHHHHHHHHHHHHHHh-hCCc
Confidence            346899999999999998653            36898776554 4       8999998732          22 2469


Q ss_pred             eEEEEeccc-----chhhccccchHHHHHHHHhcCCCCCccccceeEEEcCCh-----HHHHHHh--------cccCCcc
Q 024610          165 HLYEVSFID-----SWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDH-----YYFRKEL--------KILNLLT  226 (265)
Q Consensus       165 qiv~In~~e-----~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~-----~~iRe~L--------gi~N~~v  226 (265)
                      ++|.||..+     .+-...  +..+    +.+..+-. |-+... +-.-+..     ..+.+..        ++.  .+
T Consensus        76 ~vv~vs~~~~~~~~~~~~~~--~~~f----~~~~~~~~-fpv~~d-~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~--~i  145 (183)
T PTZ00256         76 EILAFPCNQFMEQEPWDEPE--IKEY----VQKKFNVD-FPLFQK-IEVNGENTHEIYKYLRRNSELFQNNTNEAR--QI  145 (183)
T ss_pred             EEEEEecccccccCCCCHHH--HHHH----HHHhcCCC-CCCceE-EecCCCCCCHHHHHHHhhCCCCcCccccCc--cc
Confidence            999999642     111011  2332    22211111 100000 0000111     1123332        222  24


Q ss_pred             c---EEEEEeCCCcEEEcccCCCCHHHHHHHHHHHHhhh
Q 024610          227 G---YIFLLDKFGRIRWQGFGMATPEELSSLLSCTSLLL  262 (265)
Q Consensus       227 G---YVyLVD~~grIRWagsG~at~~E~e~L~k~~~~Ll  262 (265)
                      +   .+||||++|+|++...|..++++++.   .+..||
T Consensus       146 P~~~~tflID~~G~Iv~~~~g~~~~~~l~~---~I~~ll  181 (183)
T PTZ00256        146 PWNFAKFLIDGQGKVVKYFSPKVNPNEMIQ---DIEKLL  181 (183)
T ss_pred             CcceEEEEECCCCCEEEEECCCCCHHHHHH---HHHHHh
Confidence            4   47999999999999999988886443   344444

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=98.39  E-value=3.9e-06  Score=75.81  Aligned_cols=138  Identities=14%  Similarity=0.074  Sum_probs=81.1

Q ss_pred             ccccccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhc
Q 024610           90 IPALAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFS  159 (265)
Q Consensus        90 ~ka~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~  159 (265)
                      .++......|++.+++++|+++++.+            ++||+.||.+|         ++||.+|..          .+.
T Consensus        71 ~~~~~g~~aPdF~l~d~~G~~vsLsd------------~kGK~vvl~Fw---------AswCp~c~~e~p~L~~L~~~~~  129 (236)
T PLN02399         71 ARAATEKSVHDFTVKDIDGKDVALSK------------FKGKVLLIVNV---------ASKCGLTSSNYSELSHLYEKYK  129 (236)
T ss_pred             cchhcCCCCCceEEECCCCCEEeHHH------------hCCCeEEEEEE---------cCCCcchHHHHHHHHHHHHHHh
Confidence            34456667899999999999987653            35898888666         899999863          222


Q ss_pred             cCCCeeEEEEecccch---hhccccchHHHHHHHHhcCCCCCccccceeEEE-cCCh-------HH-HHHHhccc-C---
Q 024610          160 DSKNVHLYEVSFIDSW---LLCRSPIKRILLKIMRKSKDAGENVLQRQIVYS-FGDH-------YY-FRKELKIL-N---  223 (265)
Q Consensus       160 ~~~~vqiv~In~~e~~---lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~-~g~~-------~~-iRe~Lgi~-N---  223 (265)
                       ..++++|.||..+--   ...-.-++.++...  .+++        ..++. .+..       +. ++..++.. .   
T Consensus       130 -~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~--~g~~--------fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i  198 (236)
T PLN02399        130 -TQGFEILAFPCNQFGGQEPGSNPEIKQFACTR--FKAE--------FPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLI  198 (236)
T ss_pred             -cCCcEEEEEecccccccCCCCHHHHHHHHHHh--cCCC--------CccccccCCCcchhhHHHHHHHHhcCCccCCcc
Confidence             246999999974210   00000023321111  1111        11110 1111       11 23333321 0   


Q ss_pred             CcccEEEEEeCCCcEEEcccCCCCHHHHHHHHHHHHhhh
Q 024610          224 LLTGYIFLLDKFGRIRWQGFGMATPEELSSLLSCTSLLL  262 (265)
Q Consensus       224 ~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k~~~~Ll  262 (265)
                      ...+.+||||++|+|+++..|..+++|++..   ++.||
T Consensus       199 ~~~PttfLIDk~GkVv~~~~G~~~~~~le~~---I~~lL  234 (236)
T PLN02399        199 KWNFEKFLVDKNGKVVERYPPTTSPFQIEKD---IQKLL  234 (236)
T ss_pred             ccCceEEEECCCCcEEEEECCCCCHHHHHHH---HHHHh
Confidence            2246899999999999999999988876544   44444

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=98.38  E-value=3.6e-06  Score=70.03  Aligned_cols=123  Identities=15%  Similarity=0.086  Sum_probs=68.8

Q ss_pred             CCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHhhc---------cCCCeeEEE
Q 024610           98 FPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEAFS---------DSKNVHLYE  168 (265)
Q Consensus        98 FPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~~~---------~~~~vqiv~  168 (265)
                      |=+|.+.+++|+++++.+            ++||+.||.++         ++||.+|...+.         ...+++++.
T Consensus         2 ~~~f~l~~~~G~~~~l~~------------~~Gk~vvv~~~---------as~C~~c~~~~~~l~~l~~~~~~~~~~v~~   60 (153)
T TIGR02540         2 FYSFEVKDARGRTVSLEK------------YRGKVSLVVNV---------ASECGFTDQNYRALQELHRELGPSHFNVLA   60 (153)
T ss_pred             cccceeECCCCCEecHHH------------hCCCEEEEEEe---------CCCCCchhhhHHHHHHHHHHHhhCCeEEEE
Confidence            346778889999987653            36999777544         999999874221         124799999


Q ss_pred             Eecc-------cchhhccccchHHHHHHHHh--cCCCCCccccceeEEEcCCh-HHHHHHhcccC-CcccE----EEEEe
Q 024610          169 VSFI-------DSWLLCRSPIKRILLKIMRK--SKDAGENVLQRQIVYSFGDH-YYFRKELKILN-LLTGY----IFLLD  233 (265)
Q Consensus       169 In~~-------e~~lk~~~~lk~~~~~~lrk--~~p~~~~~l~~~~~y~~g~~-~~iRe~Lgi~N-~~vGY----VyLVD  233 (265)
                      ||..       ++.  ..  ++.+    +++  +++-  ..+..-.+  .|.. ...-+ .++.. ...+.    +||||
T Consensus        61 i~~~~~~~~~~d~~--~~--~~~f----~~~~~~~~f--p~~~d~~~--~~~~~~~~~~-~~~~~~~~~p~~~~~tflID  127 (153)
T TIGR02540        61 FPCNQFGESEPDSS--KE--IESF----ARRNYGVTF--PMFSKIKI--LGSEAEPAFR-FLVDSSKKEPRWNFWKYLVN  127 (153)
T ss_pred             EeccccccCCCCCH--HH--HHHH----HHHhcCCCC--CccceEec--CCCCCCcHHH-HHHhcCCCCCCCccEEEEEc
Confidence            9952       211  01  2332    322  2221  01111000  1111 10001 11111 11333    99999


Q ss_pred             CCCcEEEcccCCCCHHHHHHH
Q 024610          234 KFGRIRWQGFGMATPEELSSL  254 (265)
Q Consensus       234 ~~grIRWagsG~at~~E~e~L  254 (265)
                      ++|+|++...|..++++++..
T Consensus       128 ~~G~v~~~~~g~~~~~~l~~~  148 (153)
T TIGR02540       128 PEGQVVKFWRPEEPVEEIRPE  148 (153)
T ss_pred             CCCcEEEEECCCCCHHHHHHH
Confidence            999999999999998876554

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=98.35  E-value=3e-06  Score=64.25  Aligned_cols=82  Identities=23%  Similarity=0.293  Sum_probs=54.5

Q ss_pred             CceEEEEEeeeccchHHHhhhcchhHH----------hhccCCCeeEEEEecccchhhccccchHHHHHHHHhc-CCCCC
Q 024610          130 PKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKS-KDAGE  198 (265)
Q Consensus       130 gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~-~p~~~  198 (265)
                      ||+++|-+|         ++||.||.+          .+.+..++++|.|++++..- .   .+.    .+++. .++  
T Consensus         1 gK~~ll~fw---------a~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~-~---~~~----~~~~~~~~~--   61 (95)
T PF13905_consen    1 GKPVLLYFW---------ASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEE-E---WKK----FLKKNNFPW--   61 (95)
T ss_dssp             TSEEEEEEE----------TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHH-H---HHH----HHHTCTTSS--
T ss_pred             CCEEEEEEE---------CCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHH-H---HHH----HHHhcCCCc--
Confidence            688999666         899998863          33445689999999987532 1   122    23433 232  


Q ss_pred             ccccceeEEEcCC--hHHHHHHhcccCCcccEEEEEeCCCcE
Q 024610          199 NVLQRQIVYSFGD--HYYFRKELKILNLLTGYIFLLDKFGRI  238 (265)
Q Consensus       199 ~~l~~~~~y~~g~--~~~iRe~Lgi~N~~vGYVyLVD~~grI  238 (265)
                          .++  .+++  ...+.+.+++..  ++.++|||++|+|
T Consensus        62 ----~~~--~~~~~~~~~l~~~~~i~~--iP~~~lld~~G~I   95 (95)
T PF13905_consen   62 ----YNV--PFDDDNNSELLKKYGING--IPTLVLLDPDGKI   95 (95)
T ss_dssp             ----EEE--ETTTHHHHHHHHHTT-TS--SSEEEEEETTSBE
T ss_pred             ----eEE--eeCcchHHHHHHHCCCCc--CCEEEEECCCCCC
Confidence                222  2333  478999999997  9999999999998

...

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=98.32  E-value=5.9e-06  Score=62.54  Aligned_cols=106  Identities=23%  Similarity=0.259  Sum_probs=69.7

Q ss_pred             ceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh------h-cc--CCCeeEEEEec
Q 024610          101 LDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA------F-SD--SKNVHLYEVSF  171 (265)
Q Consensus       101 l~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~------~-~~--~~~vqiv~In~  171 (265)
                      +.+.+++|+++++..            ..||++||.++         .+||.+|...      + ..  .+++.++.|++
T Consensus         2 ~~~~~~~g~~~~~~~------------~~~k~~ll~f~---------~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~   60 (116)
T cd02966           2 FSLPDLDGKPVSLSD------------LKGKVVLVNFW---------ASWCPPCRAEMPELEALAKEYKDDGVEVVGVNV   60 (116)
T ss_pred             ccccCCCCCEeehHH------------cCCCEEEEEee---------cccChhHHHHhHHHHHHHHHhCCCCeEEEEEEC
Confidence            455677898887542            24788888666         7898887621      1 12  36899999999


Q ss_pred             ccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccC
Q 024610          172 IDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFG  244 (265)
Q Consensus       172 ~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG  244 (265)
                      +.+ ....  ++.+    + +..+.      ...+ ..+....+.+.+|+..  ++.+||+|++|+|+++-.|
T Consensus        61 d~~-~~~~--~~~~----~-~~~~~------~~~~-~~~~~~~~~~~~~~~~--~P~~~l~d~~g~v~~~~~g  116 (116)
T cd02966          61 DDD-DPAA--VKAF----L-KKYGI------TFPV-LLDPDGELAKAYGVRG--LPTTFLIDRDGRIRARHVG  116 (116)
T ss_pred             CCC-CHHH--HHHH----H-HHcCC------Ccce-EEcCcchHHHhcCcCc--cceEEEECCCCcEEEEecC
Confidence            874 1111  2332    1 11222      1222 2466678999999984  9999999999999987655

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=98.31  E-value=4.1e-06  Score=65.39  Aligned_cols=103  Identities=17%  Similarity=0.178  Sum_probs=65.9

Q ss_pred             CCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH------hhcc--CCCeeEEEEe
Q 024610           99 PDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE------AFSD--SKNVHLYEVS  170 (265)
Q Consensus        99 Pnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~~~--~~~vqiv~In  170 (265)
                      |++.+.+++|+.+++....           .||+.||.++         ++||.+|.+      .+.+  ..+++++.|+
T Consensus         1 p~f~l~~~~G~~~~l~~~~-----------~gk~vvl~F~---------~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~   60 (114)
T cd02967           1 PTFDLTTIDGAPVRIGGIS-----------PGRPTLLFFL---------SPTCPVCKKLLPVIRSIARAEADWLDVVLAS   60 (114)
T ss_pred             CCceeecCCCCEEEccccc-----------CCCeEEEEEE---------CCCCcchHhHhHHHHHHHHHhcCCcEEEEEe
Confidence            7889999999998865320           3788888655         899998873      2221  2357888665


Q ss_pred             cccchhhccccchHHHHHHHHh-cCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcc
Q 024610          171 FIDSWLLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQG  242 (265)
Q Consensus       171 ~~e~~lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWag  242 (265)
                       +++.- .   ...+    +.+ +++.     .+. +  +  ...+.+.+++..  ++.+||||++|+|++.|
T Consensus        61 -~~~~~-~---~~~~----~~~~~~~~-----~p~-~--~--~~~~~~~~~~~~--~P~~~vid~~G~v~~~~  112 (114)
T cd02967          61 -DGEKA-E---HQRF----LKKHGLEA-----FPY-V--L--SAELGMAYQVSK--LPYAVLLDEAGVIAAKG  112 (114)
T ss_pred             -CCCHH-H---HHHH----HHHhCCCC-----CcE-E--e--cHHHHhhcCCCC--cCeEEEECCCCeEEecc
Confidence             33221 1   1222    111 1111     111 1  2  245889999975  99999999999999986

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>PRK13599 putative peroxiredoxin; Provisional

Probab=98.21  E-value=1.1e-05  Score=71.74  Aligned_cols=136  Identities=14%  Similarity=0.171  Sum_probs=82.6

Q ss_pred             ccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCC
Q 024610           94 AAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKN  163 (265)
Q Consensus        94 ~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~  163 (265)
                      .+..+|+|.+.+.+|+.....            .++||..|+ ++++       ++||.+|..          .|++ .+
T Consensus         4 ~Gd~aPdF~l~t~~G~~~~~~------------~~~Gk~vVL-~~~p-------a~~tpvCt~El~~l~~~~~~f~~-~g   62 (215)
T PRK13599          4 LGEKFPSMEVVTTQGVKRLPE------------DYAGKWFVL-FSHP-------ADFTPVCTTEFVEFARKANDFKE-LN   62 (215)
T ss_pred             CCCCCCCCEeECCCCcEecHH------------HHCCCeEEE-EEeC-------CCCCCcCHHHHHHHHHHHHHHHH-CC
Confidence            345789999999999865422            236886543 4555       899998873          2322 47


Q ss_pred             eeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCC-----cccEEEEEeCCCcE
Q 024610          164 VHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNL-----LTGYIFLLDKFGRI  238 (265)
Q Consensus       164 vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~-----~vGYVyLVD~~grI  238 (265)
                      +++|.||+++-.-..     .+ ..-+++....+    ....++ .+....+-+.+||...     .+..+||||++|+|
T Consensus        63 v~vigIS~D~~~~~~-----~w-~~~i~~~~~~~----i~fPil-~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~I  131 (215)
T PRK13599         63 TELIGLSVDQVFSHI-----KW-VEWIKDNTNIA----IPFPVI-ADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTI  131 (215)
T ss_pred             CEEEEEeCCCHHHHH-----HH-HHhHHHhcCCC----CceeEE-ECCCchHHHHcCCCccCCCCceeeEEEEECCCCEE
Confidence            999999988742211     11 11122211111    123332 3556788899998632     47899999999999


Q ss_pred             EEcccCC-CCHHHHHHHHHHHHhh
Q 024610          239 RWQGFGM-ATPEELSSLLSCTSLL  261 (265)
Q Consensus       239 RWagsG~-at~~E~e~L~k~~~~L  261 (265)
                      |+..... .++...+.+.++++.|
T Consensus       132 r~~~~~p~~~gr~~~eilr~l~~l  155 (215)
T PRK13599        132 RLIMYYPQEVGRNVDEILRALKAL  155 (215)
T ss_pred             EEEEEcCCCCCCCHHHHHHHHHHh
Confidence            9997543 2333444444555444

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=98.20  E-value=1.4e-05  Score=64.15  Aligned_cols=93  Identities=15%  Similarity=0.123  Sum_probs=59.9

Q ss_pred             CCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCCeeEEEEecccchhhc-cccchHHHHHHHHh-cCC
Q 024610          128 AIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKNVHLYEVSFIDSWLLC-RSPIKRILLKIMRK-SKD  195 (265)
Q Consensus       128 l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~vqiv~In~~e~~lk~-~~~lk~~~~~~lrk-~~p  195 (265)
                      ++||+.||.+|         ++||.+|..          .+.+ .++++|.|+..+.-... ...++.+    +.+ +++
T Consensus        21 ~~gk~vvl~F~---------a~~C~~C~~~~p~l~~l~~~~~~-~~~~vi~i~~~~~~~~~~~~~~~~~----~~~~~~~   86 (126)
T cd03012          21 LRGKVVLLDFW---------TYCCINCLHTLPYLTDLEQKYKD-DGLVVIGVHSPEFAFERDLANVKSA----VLRYGIT   86 (126)
T ss_pred             hCCCEEEEEEE---------CCCCccHHHHHHHHHHHHHHcCc-CCeEEEEeccCccccccCHHHHHHH----HHHcCCC
Confidence            36898888665         899998763          2222 46999999874311000 0002222    111 222


Q ss_pred             CCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCC
Q 024610          196 AGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGM  245 (265)
Q Consensus       196 ~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~  245 (265)
                              ..+ ..+....+.+.+++.  .++.+||+|++|+|+|+..|.
T Consensus        87 --------~p~-~~D~~~~~~~~~~v~--~~P~~~vid~~G~v~~~~~G~  125 (126)
T cd03012          87 --------YPV-ANDNDYATWRAYGNQ--YWPALYLIDPTGNVRHVHFGE  125 (126)
T ss_pred             --------CCE-EECCchHHHHHhCCC--cCCeEEEECCCCcEEEEEecC
Confidence                    222 246667888999986  589999999999999999886

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>PRK13190 putative peroxiredoxin; Provisional

Probab=98.20  E-value=3.1e-05  Score=67.95  Aligned_cols=136  Identities=15%  Similarity=0.166  Sum_probs=81.7

Q ss_pred             ccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCC
Q 024610           94 AAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKN  163 (265)
Q Consensus        94 ~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~  163 (265)
                      .+..+|+|.+.+.+| ++++.+            .+||..|| ++++       .+||.+|..          .|.+ .+
T Consensus         4 vG~~aP~F~~~~~~g-~v~l~d------------~~gk~vvL-~~~p-------~~~cp~C~~El~~l~~~~~~f~~-~~   61 (202)
T PRK13190          4 LGQKAPDFTVNTTKG-PIDLSK------------YKGKWVLL-FSHP-------ADFTPVCTTEFIAFSRRYEDFKK-LG   61 (202)
T ss_pred             CCCCCCCcEEecCCC-cEeHHH------------hCCCEEEE-EEEc-------CCCCCCCHHHHHHHHHHHHHHHH-CC
Confidence            345789999988887 565442            25886444 3455       889988763          2332 37


Q ss_pred             eeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccC----CcccEEEEEeCCCcEE
Q 024610          164 VHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILN----LLTGYIFLLDKFGRIR  239 (265)
Q Consensus       164 vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N----~~vGYVyLVD~~grIR  239 (265)
                      +++|.||+++..-     -+.+ +..+.+..+.+    ....+ ..+....+-+++||..    ..++.+||||++|+||
T Consensus        62 ~~vi~vS~D~~~~-----~~~w-~~~~~~~~g~~----~~fPl-l~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~  130 (202)
T PRK13190         62 VELVGLSVDSIYS-----HIAW-LRDIEERFGIK----IPFPV-IADIDKELAREYNLIDENSGATVRGVFIIDPNQIVR  130 (202)
T ss_pred             CEEEEEeCCCHHH-----HHHH-HHhHHHhcCCC----ceEEE-EECCChHHHHHcCCccccCCcEEeEEEEECCCCEEE
Confidence            9999999886421     1111 11112211110    12233 2466678999999853    2479999999999999


Q ss_pred             EcccCCCC-HHHHHHHHHHHHhhh
Q 024610          240 WQGFGMAT-PEELSSLLSCTSLLL  262 (265)
Q Consensus       240 WagsG~at-~~E~e~L~k~~~~Ll  262 (265)
                      |...+... +...+.+.++++.|+
T Consensus       131 ~~~~~~~~~gr~~~ellr~l~~l~  154 (202)
T PRK13190        131 WMIYYPAETGRNIDEIIRITKALQ  154 (202)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHhh
Confidence            98843322 234444455555443

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=98.17  E-value=1.4e-05  Score=70.01  Aligned_cols=133  Identities=13%  Similarity=0.135  Sum_probs=79.5

Q ss_pred             ccCCCceeeCCCCCeeeccCCCCCCccCccccCCC-ceEEEEEeeeccchHHHhhhcchhHH----------hhccCCCe
Q 024610           96 VKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIP-KVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKNV  164 (265)
Q Consensus        96 lyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~g-KvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~v  164 (265)
                      ..+|+|.+.+.+|. +++.+            ++| |..|| ++++       ++||-.|..          .|.+ .++
T Consensus         3 ~~aP~F~~~~~~g~-~~l~d------------~~g~k~vvl-f~~p-------a~~cp~C~~el~~l~~~~~~f~~-~gv   60 (203)
T cd03016           3 DTAPNFEADTTHGP-IKFHD------------YLGDSWGIL-FSHP-------ADFTPVCTTELGAFAKLAPEFKK-RNV   60 (203)
T ss_pred             CCCCCeEEecCCCc-EeHHH------------HcCCCEEEE-EEec-------CCCCCcCHHHHHHHHHHHHHHHH-cCC
Confidence            46899999988884 55432            246 54433 4555       888887762          2332 479


Q ss_pred             eEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCc------ccEEEEEeCCCcE
Q 024610          165 HLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLL------TGYIFLLDKFGRI  238 (265)
Q Consensus       165 qiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~------vGYVyLVD~~grI  238 (265)
                      ++|-||+++...     .+. +...+++....+    ....+ ..+....+-+++||.+..      +..+||||++|+|
T Consensus        61 ~vigvS~D~~~~-----~~~-~~~~i~~~~~~~----~~fpi-l~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I  129 (203)
T cd03016          61 KLIGLSVDSVES-----HIK-WIEDIEEYTGVE----IPFPI-IADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKI  129 (203)
T ss_pred             EEEEEECCCHHH-----HHH-HHhhHHHhcCCC----CceeE-EECchHHHHHHcCCccccCCCCceeeEEEEECCCCeE
Confidence            999999987421     111 122222221111    11222 245567888999997542      3469999999999


Q ss_pred             EEcccCCCC-HHHHHHHHHHHHhh
Q 024610          239 RWQGFGMAT-PEELSSLLSCTSLL  261 (265)
Q Consensus       239 RWagsG~at-~~E~e~L~k~~~~L  261 (265)
                      ||...|..+ +...+.+.+.++.|
T Consensus       130 ~~~~~~~~~~gr~~~ell~~l~~l  153 (203)
T cd03016         130 RLILYYPATTGRNFDEILRVVDAL  153 (203)
T ss_pred             EEEEecCCCCCCCHHHHHHHHHHH
Confidence            999887543 23344444444444

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=98.13  E-value=1.4e-05  Score=64.34  Aligned_cols=102  Identities=16%  Similarity=0.155  Sum_probs=66.1

Q ss_pred             eCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccC-CCeeEEEEecc
Q 024610          104 SYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDS-KNVHLYEVSFI  172 (265)
Q Consensus       104 ~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~-~~vqiv~In~~  172 (265)
                      .+++|+++++.+            ++||+.||-++         ++||.+|.+          .+.+. +++++|-|+++
T Consensus         4 ~~~~G~~v~l~~------------~~gk~vll~Fw---------a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d   62 (131)
T cd03009           4 LRNDGGKVPVSS------------LEGKTVGLYFS---------ASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWD   62 (131)
T ss_pred             cccCCCCccHHH------------hCCcEEEEEEE---------CCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECC
Confidence            467898887642            36898877555         899999873          23332 47999999998


Q ss_pred             cchhhccccchHHHHHHHHhcCCCCCccccceeEEEc-CChHHHHHHhcccCCcccEEEEEeCCCcEEEccc
Q 024610          173 DSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSF-GDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGF  243 (265)
Q Consensus       173 e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~-g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWags  243 (265)
                      +..-  .  ++..    +.+ .++      ...-+.. +....+.+.+|+..  ++.+||+|++|+|++...
T Consensus        63 ~~~~--~--~~~~----~~~-~~~------~~~~~~~~~~~~~~~~~~~v~~--~P~~~lid~~G~i~~~~~  117 (131)
T cd03009          63 RDEE--S--FNDY----FSK-MPW------LAVPFSDRERRSRLNRTFKIEG--IPTLIILDADGEVVTTDA  117 (131)
T ss_pred             CCHH--H--HHHH----HHc-CCe------eEcccCCHHHHHHHHHHcCCCC--CCEEEEECCCCCEEcccH
Confidence            7531  1  2222    222 232      1111111 22357889999986  999999999999997643

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=98.10  E-value=6.9e-05  Score=65.22  Aligned_cols=136  Identities=9%  Similarity=-0.009  Sum_probs=82.7

Q ss_pred             chhHHHHHhhhcCCeeeeccCccccc-c--ccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccc
Q 024610           67 GYFADVAELKKHGGKIATANKIIIPA-L--AAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASS  143 (265)
Q Consensus        67 ~yf~D~~~~r~~~GK~f~ap~~l~ka-~--~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~g  143 (265)
                      |-..|+..+.+++|-.-.++.---.+ .  .+..=|+|.  .++|+++++.+.              +  ||.  ||   
T Consensus        21 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~--l~dG~~v~lsd~--------------~--lV~--Fw---   77 (181)
T PRK13728         21 STRDEIERLWNPKGMAAQPAQPAADTSARTEKPAPRWFR--LSNGRQVNLADW--------------K--VVL--FM---   77 (181)
T ss_pred             chHHHHHHHHhcccCCCCccccccccccccCCCCCCccC--CCCCCEeehhHc--------------e--EEE--EE---
Confidence            44566777766655444433110000 0  001122332  347999876532              2  554  44   


Q ss_pred             hHHHhhhcchhHH------hhccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcC-ChHHHH
Q 024610          144 QAMVDSWSSPFFE------AFSDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFG-DHYYFR  216 (265)
Q Consensus       144 q~~~~sw~~p~~e------~~~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g-~~~~iR  216 (265)
                          +|||.||.+      .+.+.-+++++.|++++..-                  .       ...++ ++ ....+.
T Consensus        78 ----aswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~------------------~-------~fPv~-~dd~~~~~~  127 (181)
T PRK13728         78 ----QGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGD------------------T-------AFPEA-LPAPPDVMQ  127 (181)
T ss_pred             ----CCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCC------------------C-------CCceE-ecCchhHHH
Confidence                899999884      34444469999999886421                  0       12222 33 345577


Q ss_pred             HHhcccCCcccEEEEEeCCCcEEE-cccCCCCHHHHHHHH
Q 024610          217 KELKILNLLTGYIFLLDKFGRIRW-QGFGMATPEELSSLL  255 (265)
Q Consensus       217 e~Lgi~N~~vGYVyLVD~~grIRW-agsG~at~~E~e~L~  255 (265)
                      +.+|..-..++.+||||.+|+|++ .+.|..+.+|++...
T Consensus       128 ~~~g~~~~~iPttfLId~~G~i~~~~~~G~~~~~~L~~~I  167 (181)
T PRK13728        128 TFFPNIPVATPTTFLVNVNTLEALPLLQGATDAAGFMARM  167 (181)
T ss_pred             HHhCCCCCCCCeEEEEeCCCcEEEEEEECCCCHHHHHHHH
Confidence            788852246999999999999988 799999998886543

>PRK13189 peroxiredoxin; Provisional

Probab=98.10  E-value=3.8e-05  Score=68.53  Aligned_cols=121  Identities=17%  Similarity=0.208  Sum_probs=75.6

Q ss_pred             ccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCC
Q 024610           94 AAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKN  163 (265)
Q Consensus        94 ~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~  163 (265)
                      .+..+|+|.+.+.+|+ +.+.           +.++||..|| ++++       .+||-+|..          .|.+ .+
T Consensus        11 vG~~aPdF~~~~~~g~-~~l~-----------d~~~Gk~vvL-~f~p-------a~fcpvC~tEl~~l~~~~~ef~~-~~   69 (222)
T PRK13189         11 IGDKFPEFEVKTTHGP-IKLP-----------DDYKGKWFVL-FSHP-------ADFTPVCTTEFVAFQKRYDEFRE-LN   69 (222)
T ss_pred             CCCcCCCcEeEcCCCC-EeeH-----------HHhCCCeEEE-EEeC-------CCCCCCCHHHHHHHHHHHHHHHH-cC
Confidence            4668999999988885 3322           1236885444 4555       889887762          3332 57


Q ss_pred             eeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccC-----CcccEEEEEeCCCcE
Q 024610          164 VHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILN-----LLTGYIFLLDKFGRI  238 (265)
Q Consensus       164 vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N-----~~vGYVyLVD~~grI  238 (265)
                      +++|.||+++...     -..| ...+++..+.+    ....+ ..+....+-+++|+..     ..+..+||||++|+|
T Consensus        70 v~VigvS~D~~~~-----h~aw-~~~~~~~~g~~----i~fPl-lsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~I  138 (222)
T PRK13189         70 TELIGLSIDQVFS-----HIKW-VEWIKEKLGVE----IEFPI-IADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGII  138 (222)
T ss_pred             CEEEEEECCCHHH-----HHHH-HHhHHHhcCcC----cceeE-EEcCccHHHHHhCCCccccCCCceeEEEEECCCCeE
Confidence            9999999987432     1111 22223321111    12333 2355678889999873     245789999999999


Q ss_pred             EEcccCCC
Q 024610          239 RWQGFGMA  246 (265)
Q Consensus       239 RWagsG~a  246 (265)
                      ||..-+..
T Consensus       139 r~~~~~~~  146 (222)
T PRK13189        139 RAILYYPQ  146 (222)
T ss_pred             EEEEecCC
Confidence            99987544

>PRK13191 putative peroxiredoxin; Provisional

Probab=98.06  E-value=3.6e-05  Score=68.40  Aligned_cols=136  Identities=14%  Similarity=0.162  Sum_probs=82.9

Q ss_pred             ccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCC
Q 024610           94 AAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKN  163 (265)
Q Consensus        94 ~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~  163 (265)
                      ....+|+|.+.+.+|+.. +.           +.++||..|| ++++       .+||-+|..          .|.+ .+
T Consensus         9 iG~~aPdF~l~~~~G~~~-l~-----------~~~~GK~vvL-ff~p-------a~ftpvC~tEl~~l~~~~~ef~~-~g   67 (215)
T PRK13191          9 IGEKFPEMEVITTHGKIK-LP-----------DDYKGRWFVL-FSHP-------GDFTPVCTTEFYSFAKKYEEFKK-LN   67 (215)
T ss_pred             CCCcCCCCEeecCCCCEE-cH-----------HHhCCCcEEE-EEeC-------CCCCCcCHHHHHHHHHHHHHHHH-CC
Confidence            456799999998888642 21           1236886544 4555       889887762          3332 47


Q ss_pred             eeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCC-----cccEEEEEeCCCcE
Q 024610          164 VHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNL-----LTGYIFLLDKFGRI  238 (265)
Q Consensus       164 vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~-----~vGYVyLVD~~grI  238 (265)
                      +++|.||+++....     +.| ...+++...-+    ....+ ..+....+-+.+||.+.     ....+||||++|+|
T Consensus        68 ~~VigvS~Ds~~~h-----~aw-~~~~~~~~~~~----i~fPl-lsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~I  136 (215)
T PRK13191         68 TELIGLSVDSNISH-----IEW-VMWIEKNLKVE----VPFPI-IADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTV  136 (215)
T ss_pred             CEEEEEECCCHHHH-----HHH-HhhHHHhcCCC----CceEE-EECCchHHHHHcCCcccccCCceeEEEEEECCCCEE
Confidence            99999998764321     111 11123211111    12333 23556789999998642     36789999999999


Q ss_pred             EEcccCC-CCHHHHHHHHHHHHhh
Q 024610          239 RWQGFGM-ATPEELSSLLSCTSLL  261 (265)
Q Consensus       239 RWagsG~-at~~E~e~L~k~~~~L  261 (265)
                      |+...+. ..+..++.+.+.++.|
T Consensus       137 r~~~~~~~~~gr~~~eilr~l~al  160 (215)
T PRK13191        137 RLILYYPMEIGRNIDEILRAIRAL  160 (215)
T ss_pred             EEEEecCCCCCCCHHHHHHHHHHh
Confidence            9987655 3334555555555544

>TIGR03137 AhpC peroxiredoxin

Probab=98.02  E-value=6.5e-05  Score=64.95  Aligned_cols=116  Identities=10%  Similarity=0.029  Sum_probs=71.1

Q ss_pred             cccCCCceeeC-CCCC--eeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccC
Q 024610           95 AVKFPDLDVSY-SDRT--TLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDS  161 (265)
Q Consensus        95 AlyFPnl~~~~-l~G~--tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~  161 (265)
                      ....|+|.+.+ .+|+  ++++.            .++||++||.+  +.      .+||.+|..          .|. .
T Consensus         5 G~~aP~f~l~~~~~g~~~~~sl~------------d~~Gk~vvl~F--~p------~~~cp~C~~el~~l~~~~~~~~-~   63 (187)
T TIGR03137         5 NTEIKPFKATAYHNGEFVEVTDE------------DVKGKWSVFFF--YP------ADFTFVCPTELEDLADKYAELK-K   63 (187)
T ss_pred             CCcCCCcEeeeccCCceeEecHH------------HHCCCEEEEEE--EC------CCcCCcCHHHHHHHHHHHHHHH-h
Confidence            45689999888 4776  34322            24689877743  32      688887762          233 2


Q ss_pred             CCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCC----cccEEEEEeCCCc
Q 024610          162 KNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNL----LTGYIFLLDKFGR  237 (265)
Q Consensus       162 ~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~----~vGYVyLVD~~gr  237 (265)
                      .++++|-||.++...     .+.+ ...... .. +    ....++ .+....+-+.+|+...    ....+||||++|+
T Consensus        64 ~gv~vi~VS~D~~~~-----~~~~-~~~~~~-~~-~----l~fpll-sD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~  130 (187)
T TIGR03137        64 LGVEVYSVSTDTHFV-----HKAW-HDTSEA-IG-K----ITYPML-GDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGV  130 (187)
T ss_pred             cCCcEEEEeCCCHHH-----HHHH-Hhhhhh-cc-C----cceeEE-ECCccHHHHHhCCcccCCCceeeEEEEECCCCE
Confidence            479999999887422     1111 111110 00 0    112232 3556788889998643    3578999999999


Q ss_pred             EEEcccC
Q 024610          238 IRWQGFG  244 (265)
Q Consensus       238 IRWagsG  244 (265)
                      ||+...+
T Consensus       131 I~~~~~~  137 (187)
T TIGR03137       131 IQAVEIT  137 (187)
T ss_pred             EEEEEEe
Confidence            9999754

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.99  E-value=7.2e-05  Score=80.36  Aligned_cols=131  Identities=15%  Similarity=0.148  Sum_probs=86.8

Q ss_pred             ccccccCCCceeeC--CCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH------hh-cc--
Q 024610           92 ALAAVKFPDLDVSY--SDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE------AF-SD--  160 (265)
Q Consensus        92 a~~AlyFPnl~~~~--l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~-~~--  160 (265)
                      .......|+|...+  ++|+++++-           ..++||+.||-+|         ++||.||..      .+ ++  
T Consensus       391 ~~~g~~~p~f~~~~~~~~g~~~~l~-----------~~lkGK~vll~FW---------AsWC~pC~~e~P~L~~l~~~y~  450 (1057)
T PLN02919        391 KKTATKVPEFPPKLDWLNTAPLQFR-----------RDLKGKVVILDFW---------TYCCINCMHVLPDLEFLEKKYK  450 (1057)
T ss_pred             cccCCcCCCCcccccccCCccccch-----------hhcCCCEEEEEEE---------CCcChhHHhHhHHHHHHHHHcC
Confidence            44567888888765  678766532           1246999999666         999999973      11 22  


Q ss_pred             CCCeeEEEEecc---cchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCc
Q 024610          161 SKNVHLYEVSFI---DSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGR  237 (265)
Q Consensus       161 ~~~vqiv~In~~---e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~gr  237 (265)
                      ..++++|.|+..   +..-+..  ++.++   .+.++..        .++ .+....+-+.+++.-  +|.+||+|++|+
T Consensus       451 ~~~~~vvgV~~~~~D~~~~~~~--~~~~~---~~~~i~~--------pvv-~D~~~~~~~~~~V~~--iPt~ilid~~G~  514 (1057)
T PLN02919        451 DQPFTVVGVHSAKFDNEKDLEA--IRNAV---LRYNISH--------PVV-NDGDMYLWRELGVSS--WPTFAVVSPNGK  514 (1057)
T ss_pred             CCCeEEEEEecccccccccHHH--HHHHH---HHhCCCc--------cEE-ECCchHHHHhcCCCc--cceEEEECCCCe
Confidence            245899999742   2111111  23321   2223332        121 355566778899874  999999999999


Q ss_pred             EEEcccCCCCHHHHHHHHHHH
Q 024610          238 IRWQGFGMATPEELSSLLSCT  258 (265)
Q Consensus       238 IRWagsG~at~~E~e~L~k~~  258 (265)
                      |++...|....++++.+...+
T Consensus       515 iv~~~~G~~~~~~l~~~l~~~  535 (1057)
T PLN02919        515 LIAQLSGEGHRKDLDDLVEAA  535 (1057)
T ss_pred             EEEEEecccCHHHHHHHHHHH
Confidence            999999999998888776654

>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ

Probab=97.90  E-value=0.0002  Score=60.92  Aligned_cols=145  Identities=16%  Similarity=0.171  Sum_probs=90.3

Q ss_pred             cCCCceeeC-----CCCCeeeccCCCCCCccCccccCCCceEEEE-EeeeccchHHHhhhcchhHHhhccCCCeeEEE-E
Q 024610           97 KFPDLDVSY-----SDRTTLKLPVCSSGDVANADKAAIPKVSLVC-LTFRASSQAMVDSWSSPFFEAFSDSKNVHLYE-V  169 (265)
Q Consensus        97 yFPnl~~~~-----l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~-l~~~~~gq~~~~sw~~p~~e~~~~~~~vqiv~-I  169 (265)
                      ..|.+.+.+     |+|..++...=       .+..+.|||=||- |.-+.++.+|-+.....+.++--.+..+|... |
T Consensus         6 ~~p~V~v~d~Gel~l~~~~~~y~~W-------~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d~yqtttIi   78 (160)
T PF09695_consen    6 PVPPVTVADKGELILNGDKISYQPW-------NSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTII   78 (160)
T ss_pred             cCCceEecCCceEEEcCCccccccc-------CccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCccceeEEEEE
Confidence            457776654     56666665432       1345789998874 44455666665555555544412223466554 4


Q ss_pred             ecccchhhccccchHHHHHH-HHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCH
Q 024610          170 SFIDSWLLCRSPIKRILLKI-MRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATP  248 (265)
Q Consensus       170 n~~e~~lk~~~~lk~~~~~~-lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~  248 (265)
                      |++|.-+     .-+.|+++ +++..-+-.   |.+.+  +|....+|.+-++...... |.++|.+|+|+|+..|.-++
T Consensus        79 N~dDAi~-----gt~~fVrss~e~~kk~~p---~s~~v--lD~~G~~~~aW~L~~~~Sa-iiVlDK~G~V~F~k~G~Ls~  147 (160)
T PF09695_consen   79 NLDDAIW-----GTGGFVRSSAEDSKKEFP---WSQFV--LDSNGVVRKAWQLQEESSA-IIVLDKQGKVQFVKEGALSP  147 (160)
T ss_pred             ecccccc-----cchHHHHHHHHHhhhhCC---CcEEE--EcCCCceeccccCCCCCce-EEEEcCCccEEEEECCCCCH
Confidence            6666422     23344444 444432210   23333  5777789999998874444 77999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 024610          249 EELSSLLSCTS  259 (265)
Q Consensus       249 ~E~e~L~k~~~  259 (265)
                      +|++....-++
T Consensus       148 ~Ev~qVi~Ll~  158 (160)
T PF09695_consen  148 AEVQQVIALLK  158 (160)
T ss_pred             HHHHHHHHHHh
Confidence            99998776554

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=97.89  E-value=0.00011  Score=59.47  Aligned_cols=90  Identities=17%  Similarity=0.143  Sum_probs=58.9

Q ss_pred             CCCceEEEEEeeeccchHHHhhhcchhHHh----------hccC-CCeeEEEEecccchhhccccchHHHHHHHHhcCCC
Q 024610          128 AIPKVSLVCLTFRASSQAMVDSWSSPFFEA----------FSDS-KNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDA  196 (265)
Q Consensus       128 l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~----------~~~~-~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~  196 (265)
                      ++||+.||-++         ++||.+|.+.          +.+. ++++++-|+++++.-  .  ++.+    +++ .+ 
T Consensus        15 ~~Gk~vll~F~---------atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~--~--~~~~----~~~-~~-   75 (132)
T cd02964          15 LEGKTVGLYFS---------ASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEE--S--FNEY----FSE-MP-   75 (132)
T ss_pred             hCCCEEEEEEE---------CCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHH--H--HHHH----Hhc-CC-
Confidence            46899888666         9999998742          2333 479999999987531  1  2332    222 21 


Q ss_pred             CCccccceeEEEcCC---hHHHHHHhcccCCcccEEEEEeCCCcEEEcccC
Q 024610          197 GENVLQRQIVYSFGD---HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFG  244 (265)
Q Consensus       197 ~~~~l~~~~~y~~g~---~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG  244 (265)
                      .    +..+.  +.+   ...+.+.+++.-  ++.+||+|.+|+|+....+
T Consensus        76 ~----~~~~~--~~d~~~~~~~~~~~~v~~--iPt~~lid~~G~iv~~~~~  118 (132)
T cd02964          76 P----WLAVP--FEDEELRELLEKQFKVEG--IPTLVVLKPDGDVVTTNAR  118 (132)
T ss_pred             C----eEeec--cCcHHHHHHHHHHcCCCC--CCEEEEECCCCCEEchhHH
Confidence            1    11221  233   357888899875  8999999999999966543

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=97.87  E-value=6.6e-05  Score=63.14  Aligned_cols=91  Identities=15%  Similarity=0.038  Sum_probs=58.2

Q ss_pred             cCCCceEEEEEeeeccchHHHhhhcchhHHh----------hc------cCCCeeEEEEecccchhhccccchHHHHHHH
Q 024610          127 AAIPKVSLVCLTFRASSQAMVDSWSSPFFEA----------FS------DSKNVHLYEVSFIDSWLLCRSPIKRILLKIM  190 (265)
Q Consensus       127 ~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~----------~~------~~~~vqiv~In~~e~~lk~~~~lk~~~~~~l  190 (265)
                      .++||+.+|-+|         +|||.||.+.          +.      ...++++|.||++++.-  .  ++.+ +..+
T Consensus        22 ~~kgk~vlL~Fw---------AsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~--~--~~~f-~~~~   87 (146)
T cd03008          22 RLENRVLLLFFG---------AVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQ--Q--QESF-LKDM   87 (146)
T ss_pred             HhCCCEEEEEEE---------CCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHH--H--HHHH-HHHC
Confidence            468999998666         9999998742          22      12369999999987531  1  2332 1111


Q ss_pred             HhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEc
Q 024610          191 RKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQ  241 (265)
Q Consensus       191 rk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWa  241 (265)
                        ++++      ..+.+..+....+.+.+++..  +|++||||++|+|+=.
T Consensus        88 --~~~~------~~~p~~~~~~~~l~~~y~v~~--iPt~vlId~~G~Vv~~  128 (146)
T cd03008          88 --PKKW------LFLPFEDEFRRELEAQFSVEE--LPTVVVLKPDGDVLAA  128 (146)
T ss_pred             --CCCc------eeecccchHHHHHHHHcCCCC--CCEEEEECCCCcEEee
Confidence              1222      111111122357889999975  9999999999999944

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=97.85  E-value=0.0002  Score=65.64  Aligned_cols=121  Identities=12%  Similarity=0.097  Sum_probs=73.1

Q ss_pred             cccccCCCceeeC-CCCC--eeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhc
Q 024610           93 LAAVKFPDLDVSY-SDRT--TLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFS  159 (265)
Q Consensus        93 ~~AlyFPnl~~~~-l~G~--tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~  159 (265)
                      ..+..+|+|.+.+ .+|+  ++++.           +..+||..|+ +|++       .+||.+|..          .|.
T Consensus        69 ~vGd~aPdF~l~~~~~g~~~~vsLs-----------d~~kgk~vVL-~FyP-------a~ftpvCt~El~~l~~~~~ef~  129 (261)
T PTZ00137         69 LVGKLMPSFKGTALLNDDLVQFNSS-----------DYFKDSYGLL-VFYP-------LDFTFVCPSELLGFSERLKEFE  129 (261)
T ss_pred             cCCCCCCCCEeecccCCCceEEeHH-----------HHcCCCeEEE-EEEC-------CCCCCCCHHHHHHHHHHHHHHH
Confidence            4567789999877 5664  34432           2225775544 3344       788888763          333


Q ss_pred             cCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccC---CcccEEEEEeCCC
Q 024610          160 DSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILN---LLTGYIFLLDKFG  236 (265)
Q Consensus       160 ~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N---~~vGYVyLVD~~g  236 (265)
                      + .++++|-||+++-...     +.+ ....++......   ....+ ..|....+-+++|+.+   ....++||||++|
T Consensus       130 ~-~gv~VigIS~Ds~~~h-----~aw-~~~~~~~~g~~~---l~fPl-LsD~~~~iakayGv~~~~g~a~R~tFIID~dG  198 (261)
T PTZ00137        130 E-RGVKVLGVSVDSPFSH-----KAW-KELDVRQGGVSP---LKFPL-FSDISREVSKSFGLLRDEGFSHRASVLVDKAG  198 (261)
T ss_pred             H-CCCEEEEEECCCHHHH-----HHH-HhhhhhhccccC---cceEE-EEcCChHHHHHcCCCCcCCceecEEEEECCCC
Confidence            2 4799999999874221     111 111112111110   12333 2355678999999865   2478999999999


Q ss_pred             cEEEccc
Q 024610          237 RIRWQGF  243 (265)
Q Consensus       237 rIRWags  243 (265)
                      +||+...
T Consensus       199 ~I~~~~~  205 (261)
T PTZ00137        199 VVKHVAV  205 (261)
T ss_pred             EEEEEEE
Confidence            9999884

>PRK15000 peroxidase; Provisional

Probab=97.84  E-value=0.00019  Score=63.04  Aligned_cols=140  Identities=16%  Similarity=0.129  Sum_probs=80.5

Q ss_pred             cccCCCceeeCCC--CCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhH----------HhhccCC
Q 024610           95 AVKFPDLDVSYSD--RTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFF----------EAFSDSK  162 (265)
Q Consensus        95 AlyFPnl~~~~l~--G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~----------e~~~~~~  162 (265)
                      ...+|+|.+.+..  |+.+..-        +..+-.+||..||.  |++      ..||.+|.          +.|.+ .
T Consensus         5 g~~aPdF~~~~~~~~g~~~~~~--------~l~~~~~gk~vvL~--F~p------~~~t~vC~~El~~l~~~~~~f~~-~   67 (200)
T PRK15000          5 TRQAPDFTAAAVLGSGEIVDKF--------NFKQHTNGKTTVLF--FWP------MDFTFVCPSELIAFDKRYEEFQK-R   67 (200)
T ss_pred             CCcCCCCEeecccCCCceeeee--------eHHHHhCCCEEEEE--EEC------CCCCCCCHHHHHHHHHHHHHHHH-C
Confidence            4568999988764  4543211        11112268987774  442      35777665          23433 4


Q ss_pred             CeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCC----cccEEEEEeCCCcE
Q 024610          163 NVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNL----LTGYIFLLDKFGRI  238 (265)
Q Consensus       163 ~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~----~vGYVyLVD~~grI  238 (265)
                      ++++|.||+++....     +.+ ....++...-++   ....++ .+....+-+.+|+.+.    ....+||||++|+|
T Consensus        68 g~~vigvS~D~~~~~-----~~w-~~~~~~~~g~~~---i~fpll-sD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I  137 (200)
T PRK15000         68 GVEVVGVSFDSEFVH-----NAW-RNTPVDKGGIGP---VKYAMV-ADVKREIQKAYGIEHPDEGVALRGSFLIDANGIV  137 (200)
T ss_pred             CCEEEEEECCCHHHH-----HHH-HhhHHHhCCccc---cCceEE-ECCCcHHHHHcCCccCCCCcEEeEEEEECCCCEE
Confidence            799999998864321     111 111222111000   123332 3556788889998743    47899999999999


Q ss_pred             EEcccCCCCH-HHHHHHHHHHHhh
Q 024610          239 RWQGFGMATP-EELSSLLSCTSLL  261 (265)
Q Consensus       239 RWagsG~at~-~E~e~L~k~~~~L  261 (265)
                      |....|..+. ..++.+.+.++.|
T Consensus       138 ~~~~~~~~~~gr~~~eilr~l~al  161 (200)
T PRK15000        138 RHQVVNDLPLGRNIDEMLRMVDAL  161 (200)
T ss_pred             EEEEecCCCCCCCHHHHHHHHHHh
Confidence            9998886433 3444444544443

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=97.77  E-value=0.0003  Score=61.30  Aligned_cols=134  Identities=11%  Similarity=0.076  Sum_probs=77.6

Q ss_pred             cccCCCceeeC----CCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhH----------Hhhcc
Q 024610           95 AVKFPDLDVSY----SDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFF----------EAFSD  160 (265)
Q Consensus        95 AlyFPnl~~~~----l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~----------e~~~~  160 (265)
                      ....|+|.+.+    .+|+++++.+            ++||..||  +|++      .+||..|.          +.|.+
T Consensus         9 G~~aPdF~~~~~~~~~~~~~v~l~d------------~~Gk~~lL--~F~p------~~~~~~C~~e~~~l~~~~~~f~~   68 (199)
T PTZ00253          9 NHPAPSFEEVALMPNGSFKKISLSS------------YKGKWVVL--FFYP------LDFTFVCPTEIIQFSDSVKRFNE   68 (199)
T ss_pred             CCcCCCCEeeccccCCCCcEEeHHH------------HCCCEEEE--EEEc------CCCCCcCHHHHHHHHHHHHHHHH
Confidence            44678998665    3456776542            36898777  3442      45555443          33433


Q ss_pred             CCCeeEEEEecccchh-hccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcc----cEEEEEeCC
Q 024610          161 SKNVHLYEVSFIDSWL-LCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLT----GYIFLLDKF  235 (265)
Q Consensus       161 ~~~vqiv~In~~e~~l-k~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~v----GYVyLVD~~  235 (265)
                       .++++|.||.++... +.|     .+......+...     ....+ ..+....+-+.+|+.+...    .-+||||++
T Consensus        69 -~g~~vv~IS~d~~~~~~~~-----~~~~~~~~~~~~-----~~fpl-l~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~  136 (199)
T PTZ00253         69 -LNCEVLACSMDSEYAHLQW-----TLQERKKGGLGT-----MAIPM-LADKTKSIARSYGVLEEEQGVAYRGLFIIDPK  136 (199)
T ss_pred             -cCCEEEEEeCCCHHHHHHH-----HhChHhhCCccc-----cccce-EECcHhHHHHHcCCcccCCCceEEEEEEECCC
Confidence             379999999876432 111     000001111111     11222 3567788999999975433    468999999


Q ss_pred             CcEEEcccCC-CCHHHHHHHHHHHHh
Q 024610          236 GRIRWQGFGM-ATPEELSSLLSCTSL  260 (265)
Q Consensus       236 grIRWagsG~-at~~E~e~L~k~~~~  260 (265)
                      |+||+...+. +.+..++.+.+.++.
T Consensus       137 G~i~~~~~~~~~~~r~~~e~l~~l~a  162 (199)
T PTZ00253        137 GMLRQITVNDMPVGRNVEEVLRLLEA  162 (199)
T ss_pred             CEEEEEEecCCCCCCCHHHHHHHHHh
Confidence            9999998774 344444444444443

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=97.58  E-value=0.00059  Score=59.46  Aligned_cols=120  Identities=11%  Similarity=0.054  Sum_probs=70.3

Q ss_pred             ccccCCCceeeCC-CCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCC
Q 024610           94 AAVKFPDLDVSYS-DRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSK  162 (265)
Q Consensus        94 ~AlyFPnl~~~~l-~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~  162 (265)
                      -..++|+|.+... +|.-....          ...++||+.||.++  .      .+||.+|..          .|.+ .
T Consensus         4 ~~~~~p~f~~~~~~~g~~~~v~----------L~d~~Gk~vvL~F~--P------~~~~p~C~~el~~l~~~~~~f~~-~   64 (187)
T PRK10382          4 INTKIKPFKNQAFKNGEFIEVT----------EKDTEGRWSVFFFY--P------ADFTFVCPTELGDVADHYEELQK-L   64 (187)
T ss_pred             cCCcCCCcEEEEEeCCcceEEE----------HHHhCCCeEEEEEE--C------CCCCCcCHHHHHHHHHHHHHHHh-C
Confidence            3467899986543 34332211          12357997666443  2      677776652          2322 4


Q ss_pred             CeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccC----CcccEEEEEeCCCcE
Q 024610          163 NVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILN----LLTGYIFLLDKFGRI  238 (265)
Q Consensus       163 ~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N----~~vGYVyLVD~~grI  238 (265)
                      +++++-||.++-..     .+.| ....+. +. +    ....+. .+....+-+++|+..    .....+||||++|+|
T Consensus        65 g~~vigIS~D~~~~-----~~a~-~~~~~~-~~-~----l~fpll-sD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I  131 (187)
T PRK10382         65 GVDVYSVSTDTHFT-----HKAW-HSSSET-IA-K----IKYAMI-GDPTGALTRNFDNMREDEGLADRATFVVDPQGII  131 (187)
T ss_pred             CCEEEEEeCCCHHH-----HHHH-HHhhcc-cc-C----CceeEE-EcCchHHHHHcCCCcccCCceeeEEEEECCCCEE
Confidence            79999999876432     1222 111111 10 0    123332 466788999999853    234899999999999


Q ss_pred             EEcccCC
Q 024610          239 RWQGFGM  245 (265)
Q Consensus       239 RWagsG~  245 (265)
                      |+.....
T Consensus       132 ~~~~~~~  138 (187)
T PRK10382        132 QAIEVTA  138 (187)
T ss_pred             EEEEEeC
Confidence            9996543

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=97.58  E-value=0.00045  Score=58.43  Aligned_cols=88  Identities=17%  Similarity=0.140  Sum_probs=56.1

Q ss_pred             CceEEEEEeeeccchHHHhhhcchhHH------hhccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccc
Q 024610          130 PKVSLVCLTFRASSQAMVDSWSSPFFE------AFSDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQR  203 (265)
Q Consensus       130 gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~  203 (265)
                      ++..||-+|         +|||.||.+      .+.+.-+++++.||+++....               ..|        
T Consensus        50 ~~~~lvnFW---------AsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~~~~---------------~fp--------   97 (153)
T TIGR02738        50 DDYALVFFY---------QSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQGLT---------------GFP--------   97 (153)
T ss_pred             CCCEEEEEE---------CCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCCccc---------------ccc--------
Confidence            345577554         999999983      344444689999998874211               011        


Q ss_pred             eeEEEcCC-hHHHHHHh---cccCCcccEEEEEeCCCcEEE-cccCCCCHHHHHHH
Q 024610          204 QIVYSFGD-HYYFRKEL---KILNLLTGYIFLLDKFGRIRW-QGFGMATPEELSSL  254 (265)
Q Consensus       204 ~~~y~~g~-~~~iRe~L---gi~N~~vGYVyLVD~~grIRW-agsG~at~~E~e~L  254 (265)
                      .   .++. .......+   ++.  .+|.+||||++|++++ .+.|..+.++++..
T Consensus        98 ~---~~~~~~~~~~~~~~~~~v~--~iPTt~LID~~G~~i~~~~~G~~s~~~l~~~  148 (153)
T TIGR02738        98 D---PLPATPEVMQTFFPNPRPV--VTPATFLVNVNTRKAYPVLQGAVDEAELANR  148 (153)
T ss_pred             c---ccCCchHHHHHHhccCCCC--CCCeEEEEeCCCCEEEEEeecccCHHHHHHH
Confidence            0   0121 12233344   443  5899999999999766 78999999887654

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=97.41  E-value=0.0012  Score=54.77  Aligned_cols=82  Identities=16%  Similarity=0.166  Sum_probs=56.8

Q ss_pred             CCceEEEEEeeeccchHHHhhhcchhHHh------hcc-C-CCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCcc
Q 024610          129 IPKVSLVCLTFRASSQAMVDSWSSPFFEA------FSD-S-KNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENV  200 (265)
Q Consensus       129 ~gKvSIV~l~~~~~gq~~~~sw~~p~~e~------~~~-~-~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~  200 (265)
                      .||+.||-++         ++||.+|...      +.+ . ..++++.|++++...                        
T Consensus        19 ~gk~vvV~F~---------A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~------------------------   65 (142)
T cd02950          19 NGKPTLVEFY---------ADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKW------------------------   65 (142)
T ss_pred             CCCEEEEEEE---------CCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCccc------------------------
Confidence            5788888665         8999998731      111 1 235666666654210                        


Q ss_pred             ccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHHH
Q 024610          201 LQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLSC  257 (265)
Q Consensus       201 l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k~  257 (265)
                                  ..+-+.+++..  ++.++++|.+|++++...|..+.+|++.+...
T Consensus        66 ------------~~~~~~~~V~~--iPt~v~~~~~G~~v~~~~G~~~~~~l~~~l~~  108 (142)
T cd02950          66 ------------LPEIDRYRVDG--IPHFVFLDREGNEEGQSIGLQPKQVLAQNLDA  108 (142)
T ss_pred             ------------HHHHHHcCCCC--CCEEEEECCCCCEEEEEeCCCCHHHHHHHHHH
Confidence                        12335567775  99999999999999999999998887665543

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems

Probab=97.31  E-value=0.0021  Score=55.02  Aligned_cols=123  Identities=19%  Similarity=0.174  Sum_probs=67.8

Q ss_pred             ccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhh--cchhHHhhcc-CCCeeEEEEe
Q 024610           94 AAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSW--SSPFFEAFSD-SKNVHLYEVS  170 (265)
Q Consensus        94 ~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw--~~p~~e~~~~-~~~vqiv~In  170 (265)
                      ....-|++++.|.+|++++..            .++||++||.++++.=..-|-.+-  .....+.+.+ ..++++|-|+
T Consensus        28 ~~~~~~~f~L~d~~G~~~~~~------------~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~IS   95 (174)
T PF02630_consen   28 NPRIVPDFTLTDQDGKTVTLD------------DLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFIS   95 (174)
T ss_dssp             TSCSSST-EEEETTSSEEEGG------------GGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred             CCccCCCcEEEcCCCCEecHH------------HhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEE
Confidence            566788999999999999853            247999999988764322211110  0012233333 4689999999


Q ss_pred             cccchh-hccccchHHHHHHHHhcCCCCCccccceeEE-EcCChHHHHHHhcccC--------------CcccEEEEEeC
Q 024610          171 FIDSWL-LCRSPIKRILLKIMRKSKDAGENVLQRQIVY-SFGDHYYFRKELKILN--------------LLTGYIFLLDK  234 (265)
Q Consensus       171 ~~e~~l-k~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y-~~g~~~~iRe~Lgi~N--------------~~vGYVyLVD~  234 (265)
                      ++...= ...  ++..     .+..+..    + ..++ .-++..++.+.+++..              .+++.+||||+
T Consensus        96 vDP~~DTp~~--L~~Y-----~~~~~~~----~-~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp  163 (174)
T PF02630_consen   96 VDPERDTPEV--LKKY-----AKKFGPD----F-IGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDP  163 (174)
T ss_dssp             SSTTTC-HHH--HHHH-----HHCHTTT----C-EEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-T
T ss_pred             eCCCCCCHHH--HHHH-----HHhcCCC----c-ceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcC
Confidence            985431 111  3332     2222221    0 1111 0122244555555432              26789999999


Q ss_pred             CCcEEE
Q 024610          235 FGRIRW  240 (265)
Q Consensus       235 ~grIRW  240 (265)
                      +||||=
T Consensus       164 ~G~i~~  169 (174)
T PF02630_consen  164 DGRIRA  169 (174)
T ss_dssp             TSEEEE
T ss_pred             CCcEEE
Confidence            999983

In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=97.21  E-value=0.0056  Score=52.23  Aligned_cols=129  Identities=15%  Similarity=0.123  Sum_probs=81.0

Q ss_pred             cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhH----------HhhccCCCe
Q 024610           95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFF----------EAFSDSKNV  164 (265)
Q Consensus        95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~----------e~~~~~~~v  164 (265)
                      ....|+|.+.+-+|+++++.+            ++||..|+-++ -       ..|+..|.          +.|... ++
T Consensus         7 G~~aPdF~Lp~~~g~~v~Lsd------------~~Gk~VVLyFY-P-------k~~TpgCT~Ea~~Frd~~~ef~~~-~a   65 (157)
T COG1225           7 GDKAPDFELPDQDGETVSLSD------------LRGKPVVLYFY-P-------KDFTPGCTTEACDFRDLLEEFEKL-GA   65 (157)
T ss_pred             CCcCCCeEeecCCCCEEehHH------------hcCCcEEEEEC-C-------CCCCCcchHHHHHHHHHHHHHHhC-CC
Confidence            456899999999999988763            36895555443 2       34444443          234444 89


Q ss_pred             eEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCccc----------EEEEEeC
Q 024610          165 HLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTG----------YIFLLDK  234 (265)
Q Consensus       165 qiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vG----------YVyLVD~  234 (265)
                      +++-||.+.-.-     .+++     +....     |. ..+ ..+....+-+++|+-....+          -+||||+
T Consensus        66 ~V~GIS~Ds~~~-----~~~F-----~~k~~-----L~-f~L-LSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~  128 (157)
T COG1225          66 VVLGISPDSPKS-----HKKF-----AEKHG-----LT-FPL-LSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDP  128 (157)
T ss_pred             EEEEEeCCCHHH-----HHHH-----HHHhC-----CC-cee-eECCcHHHHHHhCcccccccCccccccccceEEEECC
Confidence            999999987432     1222     11111     11 223 23666778999998775443          4899999


Q ss_pred             CCcEEEcccCCCCHHHHHHHHHHHHhh
Q 024610          235 FGRIRWQGFGMATPEELSSLLSCTSLL  261 (265)
Q Consensus       235 ~grIRWagsG~at~~E~e~L~k~~~~L  261 (265)
                      +|+||.+-.........+...+.++.|
T Consensus       129 dG~I~~~~~~v~~~~h~~~vl~~l~~l  155 (157)
T COG1225         129 DGKIRYVWRKVKVKGHADEVLAALKKL  155 (157)
T ss_pred             CCeEEEEecCCCCcccHHHHHHHHHHh
Confidence            999998886655554444444444443

>TIGR02740 TraF-like TraF-like protein

Probab=97.15  E-value=0.0027  Score=58.41  Aligned_cols=93  Identities=23%  Similarity=0.182  Sum_probs=66.6

Q ss_pred             ccCCCceEEEEEeeeccchHHHhhhcchhHH------hhccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCc
Q 024610          126 KAAIPKVSLVCLTFRASSQAMVDSWSSPFFE------AFSDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGEN  199 (265)
Q Consensus       126 ~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~  199 (265)
                      ..+.|++.||-++         ++||.+|..      .+.+.-+++++-||++++-..               ..|.   
T Consensus       162 ~~l~~k~~Lv~F~---------AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~---------------~fp~---  214 (271)
T TIGR02740       162 KDLAKKSGLFFFF---------KSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLP---------------GFPN---  214 (271)
T ss_pred             HHhcCCeEEEEEE---------CCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccc---------------cCCc---
Confidence            3467898888555         899998873      455444689999998774221               0121   


Q ss_pred             cccceeEEEcCChHHHHHHhcccCCcccEEEEEeC-CCcEEEcccCCCCHHHHHHHHH
Q 024610          200 VLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDK-FGRIRWQGFGMATPEELSSLLS  256 (265)
Q Consensus       200 ~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~-~grIRWagsG~at~~E~e~L~k  256 (265)
                               +.+...+.+.+|+..  ++-+||||+ .|+|+..+.|..+.+|++....
T Consensus       215 ---------~~~d~~la~~~gV~~--vPtl~Lv~~~~~~v~~v~~G~~s~~eL~~~i~  261 (271)
T TIGR02740       215 ---------ARPDAGQAQQLKIRT--VPAVFLADPDPNQFTPIGFGVMSADELVDRIL  261 (271)
T ss_pred             ---------ccCCHHHHHHcCCCc--CCeEEEEECCCCEEEEEEeCCCCHHHHHHHHH
Confidence                     122345778999965  999999998 5889999999999998765443

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=97.10  E-value=0.0071  Score=52.63  Aligned_cols=54  Identities=13%  Similarity=-0.001  Sum_probs=40.8

Q ss_pred             cCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH---------hhccCCCeeEE
Q 024610           97 KFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE---------AFSDSKNVHLY  167 (265)
Q Consensus        97 yFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e---------~~~~~~~vqiv  167 (265)
                      .++++.+++++|+++++.+            ++||+.||..+         +|||.+|.+         .++ ..+++++
T Consensus         4 ~~~~f~~~~~~G~~v~Ls~------------~~GKvvLVvf~---------AS~C~~~~q~~~L~~L~~~y~-~~gl~Vl   61 (183)
T PRK10606          4 SILTTVVTTIDGEVTTLEK------------YAGNVLLIVNV---------ASKCGLTPQYEQLENIQKAWA-DQGFVVL   61 (183)
T ss_pred             CccCcEeECCCCCEEeHHH------------hCCCEEEEEEE---------eCCCCCcHHHHHHHHHHHHHh-hCCeEEE
Confidence            5889999999999987642            46999888665         899986642         222 2479999


Q ss_pred             EEecc
Q 024610          168 EVSFI  172 (265)
Q Consensus       168 ~In~~  172 (265)
                      .|+..
T Consensus        62 g~p~n   66 (183)
T PRK10606         62 GFPCN   66 (183)
T ss_pred             Eeecc
Confidence            99874

>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=96.76  E-value=0.025  Score=49.76  Aligned_cols=133  Identities=18%  Similarity=0.200  Sum_probs=78.9

Q ss_pred             cccCCCceeeCC-CCC---eeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcc--h--------hHHhhcc
Q 024610           95 AVKFPDLDVSYS-DRT---TLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSS--P--------FFEAFSD  160 (265)
Q Consensus        95 AlyFPnl~~~~l-~G~---tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~--p--------~~e~~~~  160 (265)
                      ...+|++.+... .|.   ++++++.            .||-+|+  ||..      .-|+=  |        ..+.|++
T Consensus         6 g~~aP~F~~~a~~~~~~~~~i~l~d~------------~gkw~VL--ff~P------~DFTfVCpTEi~af~~~y~eF~~   65 (194)
T COG0450           6 GKKAPDFTANAVLGGEIFEEITLSDY------------YGKWVVL--FFYP------ADFTFVCPTEIIAFAKRYEEFQK   65 (194)
T ss_pred             CCcCCCcEEEEEecCceeeEEechhh------------cCcEEEE--Eecc------CCCCccCcchHHHHHhhhHHHHH
Confidence            456899998776 664   6766532            3566666  4442      22211  1        1133444


Q ss_pred             CCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCccc----EEEEEeCCC
Q 024610          161 SKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTG----YIFLLDKFG  236 (265)
Q Consensus       161 ~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vG----YVyLVD~~g  236 (265)
                      . ++++|-||++.-..-     +.| ..-+++...-++   ....+. -+.+.++-+++||.++..|    -+||||++|
T Consensus        66 ~-g~eVigvS~Ds~fsH-----~aW-~~~~~~~~gi~~---i~~Pmi-aD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g  134 (194)
T COG0450          66 R-GVEVIGVSTDSVFSH-----KAW-KATIREAGGIGK---IKFPMI-ADPKGEIARAYGVLHPEEGLALRGTFIIDPDG  134 (194)
T ss_pred             c-CCEEEEEecCcHHHH-----HHH-HhcHHhcCCccc---eecceE-EcCchhHHHHcCCcccCCCcceeEEEEECCCC
Confidence            4 799999999875431     122 111333222111   123331 2557899999999998877    899999999


Q ss_pred             cEEEcccCCCC-HHHHHHHHHHH
Q 024610          237 RIRWQGFGMAT-PEELSSLLSCT  258 (265)
Q Consensus       237 rIRWagsG~at-~~E~e~L~k~~  258 (265)
                      +||++-.-+.+ +..++.+.+.+
T Consensus       135 ~ir~~~v~~~~iGRn~dEilR~i  157 (194)
T COG0450         135 VIRHILVNPLTIGRNVDEILRVI  157 (194)
T ss_pred             eEEEEEEecCCCCcCHHHHHHHH
Confidence            99999876655 43333333333

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=96.73  E-value=0.0065  Score=46.76  Aligned_cols=40  Identities=10%  Similarity=0.021  Sum_probs=34.4

Q ss_pred             HHHHHHhcccCCcccEEEEEeC-CCcEEEcccCCCCHHHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDK-FGRIRWQGFGMATPEELSSL  254 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~-~grIRWagsG~at~~E~e~L  254 (265)
                      .++.+.+++..  +|.++++|+ +|++.+...|+.+.+++...
T Consensus        62 ~~~~~~~~i~~--~Pti~~~~~~~g~~~~~~~G~~~~~~l~~~  102 (104)
T cd02953          62 TALLKRFGVFG--PPTYLFYGPGGEPEPLRLPGFLTADEFLEA  102 (104)
T ss_pred             HHHHHHcCCCC--CCEEEEECCCCCCCCcccccccCHHHHHHH
Confidence            45667788875  999999999 99999999999999987654

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=96.59  E-value=0.017  Score=45.89  Aligned_cols=93  Identities=12%  Similarity=0.064  Sum_probs=63.6

Q ss_pred             CC-ceEEEEEeeeccchHHHhhhcchhHHh---hcc--------CCCeeEEEEecccchhhccccchHHHHHHHHhcCCC
Q 024610          129 IP-KVSLVCLTFRASSQAMVDSWSSPFFEA---FSD--------SKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDA  196 (265)
Q Consensus       129 ~g-KvSIV~l~~~~~gq~~~~sw~~p~~e~---~~~--------~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~  196 (265)
                      .| |+.+|-++         ++||.+|...   +..        ..++.++.|+++++.-     +..         .+.
T Consensus        12 ~~~k~vlv~f~---------a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~-----~~~---------~~~   68 (125)
T cd02951          12 DGKKPLLLLFS---------QPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKE-----VTD---------FDG   68 (125)
T ss_pred             cCCCcEEEEEe---------CCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCce-----eec---------cCC
Confidence            36 88888665         9999998732   111        1357888898876431     111         010


Q ss_pred             CCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCC-CcEEEcccCCCCHHHHHHHHHH
Q 024610          197 GENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKF-GRIRWQGFGMATPEELSSLLSC  257 (265)
Q Consensus       197 ~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~-grIRWagsG~at~~E~e~L~k~  257 (265)
                             .    .....++...+++.-  +|.++++|++ |++.+.-.|+.+++++..+.+-
T Consensus        69 -------~----~~~~~~l~~~~~v~~--~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~  117 (125)
T cd02951          69 -------E----ALSEKELARKYRVRF--TPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEY  117 (125)
T ss_pred             -------C----CccHHHHHHHcCCcc--ccEEEEEcCCCCceeEEecCCCCHHHHHHHHHH
Confidence                   0    012356788888874  9999999999 8999999999998877666543

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]

Probab=96.52  E-value=0.037  Score=48.93  Aligned_cols=136  Identities=17%  Similarity=0.114  Sum_probs=79.8

Q ss_pred             cccccccCC-CceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhH-------Hhh--cc
Q 024610           91 PALAAVKFP-DLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFF-------EAF--SD  160 (265)
Q Consensus        91 ka~~AlyFP-nl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~-------e~~--~~  160 (265)
                      ....+.+.| ++.+.+-+|+.+...            .++||++||.+.|+-     +..-|-.-.       ...  ..
T Consensus        39 ~~~~~~~~~g~f~l~d~~G~~~~~~------------~l~Gk~~lv~FgyT~-----CpdVCP~~l~~l~~~~~~l~~~~  101 (207)
T COG1999          39 LDAAAVYIGGDFELTDQDGKPFTLK------------DLKGKPSLVFFGYTH-----CPDVCPTTLAELKALLKKLGEGE  101 (207)
T ss_pred             ccccccccCCceeeecCCCCEeecc------------ccCCCEEEEEeecCC-----CCccChHHHHHHHHHHHHhcccc
Confidence            355566777 688889999998643            357999999887652     222332111       111  34


Q ss_pred             CCCeeEEEEecccch-hhccccchHHHHHHHHhcCCCCCccccceeEEEcCCh---HHHHHHhccc-------------C
Q 024610          161 SKNVHLYEVSFIDSW-LLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDH---YYFRKELKIL-------------N  223 (265)
Q Consensus       161 ~~~vqiv~In~~e~~-lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~---~~iRe~Lgi~-------------N  223 (265)
                      ..++|+|-|+++... .+..  ++..    ........    +. -+  -|+.   +.+-+++++.             .
T Consensus       102 ~~~v~vv~itvDPerDtp~~--lk~Y----~~~~~~~~----~~-~l--tg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~  168 (207)
T COG1999         102 GDDVQVVFITVDPERDTPEV--LKKY----AELNFDPR----WI-GL--TGTPEQIEEVAKAYGVFYSKVPLDDSQNYTI  168 (207)
T ss_pred             CCCEEEEEEEECCCCCCHHH--HHHH----hcccCCCC----ee-ee--eCCHHHHHHHHHHhcceeeecccCCCCCcee
Confidence            568999999998765 2222  3332    11111110    10 01  1221   2222333322             2


Q ss_pred             CcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610          224 LLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS  256 (265)
Q Consensus       224 ~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k  256 (265)
                      .++..+||||++|+|+-.-.+..+++|+....+
T Consensus       169 ~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~  201 (207)
T COG1999         169 DHSAGFYLIDADGRFLGTYDYGEPPEEIAADLK  201 (207)
T ss_pred             eeeeEEEEECCCCeEEEEecCCCChHHHHHHHH
Confidence            368899999999999999888888777655443

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=96.25  E-value=0.036  Score=42.98  Aligned_cols=76  Identities=17%  Similarity=0.149  Sum_probs=48.0

Q ss_pred             CCceEEEEEeeeccchHHHhhhcchhHH------hh-ccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccc
Q 024610          129 IPKVSLVCLTFRASSQAMVDSWSSPFFE------AF-SDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVL  201 (265)
Q Consensus       129 ~gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~-~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l  201 (265)
                      +|++.||-++         ++||.||..      .+ .+.+++.++.|+.+++-.                         
T Consensus        14 ~~k~vvv~F~---------a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~-------------------------   59 (103)
T cd02985          14 KGRLVVLEFA---------LKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDS-------------------------   59 (103)
T ss_pred             CCCEEEEEEE---------CCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChH-------------------------
Confidence            3788888666         999999873      11 223567777777665310                         


Q ss_pred             cceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHH
Q 024610          202 QRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELS  252 (265)
Q Consensus       202 ~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e  252 (265)
                                ..++-+.+++..  +|- |++..+|++.+...|..+ +|+.
T Consensus        60 ----------~~~l~~~~~V~~--~Pt-~~~~~~G~~v~~~~G~~~-~~l~   96 (103)
T cd02985          60 ----------TMELCRREKIIE--VPH-FLFYKDGEKIHEEEGIGP-DELI   96 (103)
T ss_pred             ----------HHHHHHHcCCCc--CCE-EEEEeCCeEEEEEeCCCH-HHHH
Confidence                      012334456664  664 555579999999999554 4443

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>PHA02278 thioredoxin-like protein

Probab=95.97  E-value=0.059  Score=42.44  Aligned_cols=81  Identities=17%  Similarity=0.096  Sum_probs=54.6

Q ss_pred             CCceEEEEEeeeccchHHHhhhcchhH------HhhccC--CCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCcc
Q 024610          129 IPKVSLVCLTFRASSQAMVDSWSSPFF------EAFSDS--KNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENV  200 (265)
Q Consensus       129 ~gKvSIV~l~~~~~gq~~~~sw~~p~~------e~~~~~--~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~  200 (265)
                      .+++.||-++         ++||.||.      +.+...  ..+.++.||++++..                        
T Consensus        13 ~~~~vvV~F~---------A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~------------------------   59 (103)
T PHA02278         13 QKKDVIVMIT---------QDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDV------------------------   59 (103)
T ss_pred             CCCcEEEEEE---------CCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCcccc------------------------
Confidence            4677888666         99999997      223222  234566666554211                        


Q ss_pred             ccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610          201 LQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL  255 (265)
Q Consensus       201 l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~  255 (265)
                                +..++-+.++|..  +|-+.+.. +|++.+...|..+.+++..+.
T Consensus        60 ----------d~~~l~~~~~I~~--iPT~i~fk-~G~~v~~~~G~~~~~~l~~~~  101 (103)
T PHA02278         60 ----------DREKAVKLFDIMS--TPVLIGYK-DGQLVKKYEDQVTPMQLQELE  101 (103)
T ss_pred             ----------ccHHHHHHCCCcc--ccEEEEEE-CCEEEEEEeCCCCHHHHHhhh
Confidence                      0134667777876  77665665 899999999999998887664

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=95.97  E-value=0.027  Score=43.47  Aligned_cols=97  Identities=21%  Similarity=0.188  Sum_probs=60.0

Q ss_pred             CCceEEEEEeeeccchHHHhhhcchhHH---h------hccC--CCeeEEEEecccchhhccccchHHHHHHHHhcCCCC
Q 024610          129 IPKVSLVCLTFRASSQAMVDSWSSPFFE---A------FSDS--KNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAG  197 (265)
Q Consensus       129 ~gKvSIV~l~~~~~gq~~~~sw~~p~~e---~------~~~~--~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~  197 (265)
                      .||..||-++         +.||..|..   .      +...  .++.++.+++.++.-...    .     +...-+..
T Consensus         4 ~~k~~v~~F~---------~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~   65 (112)
T PF13098_consen    4 NGKPIVVVFT---------DPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESE----A-----VLDFDGQK   65 (112)
T ss_dssp             TSSEEEEEEE----------TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHH----H-----HHSHTCHS
T ss_pred             CCCEEEEEEE---------CCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccc----c-----ccccccch
Confidence            3788888665         889998872   1      2121  368899999987543111    1     11111100


Q ss_pred             CccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHH
Q 024610          198 ENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSL  254 (265)
Q Consensus       198 ~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L  254 (265)
                            .   ....+.++-+.+|+.=  +|.++++|.+|++...-.|+.+++|+..+
T Consensus        66 ------~---~~~~~~~l~~~~~v~g--tPt~~~~d~~G~~v~~~~G~~~~~~l~~~  111 (112)
T PF13098_consen   66 ------N---VRLSNKELAQRYGVNG--TPTIVFLDKDGKIVYRIPGYLSPEELLKM  111 (112)
T ss_dssp             ------S---CHHHHHHHHHHTT--S--SSEEEECTTTSCEEEEEESS--HHHHHHH
T ss_pred             ------h---hhHHHHHHHHHcCCCc--cCEEEEEcCCCCEEEEecCCCCHHHHHhh
Confidence                  0   0122357889999885  99999999999999999999999998764

...

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=95.52  E-value=0.15  Score=42.78  Aligned_cols=124  Identities=15%  Similarity=0.139  Sum_probs=70.5

Q ss_pred             ccCCCceeeCCC---CCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhH---HhhccCCCe-eEEE
Q 024610           96 VKFPDLDVSYSD---RTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFF---EAFSDSKNV-HLYE  168 (265)
Q Consensus        96 lyFPnl~~~~l~---G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~---e~~~~~~~v-qiv~  168 (265)
                      ...|+|.+.+.+   |+++++.+           .++||..||.++=.++---|...|...|.   +.|.+. ++ +++-
T Consensus         3 ~~aPdF~l~~~~~~~g~~v~L~~-----------~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~-g~~~V~~   70 (155)
T cd03013           3 DKLPNVTLFEYVPGPPNPVNLSE-----------LFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAK-GVDEVIC   70 (155)
T ss_pred             CcCCCeEeeeeccCCCceeeHHH-----------HhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHC-CCCEEEE
Confidence            468999988875   88876542           23577655544322232223333233333   234433 66 6999


Q ss_pred             EecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCc---------ccEEEEEeCCCcEE
Q 024610          169 VSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLL---------TGYIFLLDKFGRIR  239 (265)
Q Consensus       169 In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~---------vGYVyLVD~~grIR  239 (265)
                      |+.+.-..     .+.|     ++...-.    ....+. -+....+-+++|+....         .-++|||| +|+||
T Consensus        71 iS~D~~~~-----~~~~-----~~~~~~~----~~f~lL-sD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~  134 (155)
T cd03013          71 VSVNDPFV-----MKAW-----GKALGAK----DKIRFL-ADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVK  134 (155)
T ss_pred             EECCCHHH-----HHHH-----HHhhCCC----CcEEEE-ECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEE
Confidence            99887443     1222     2211110    012232 34567888999986432         34689999 79999


Q ss_pred             EcccCCCC
Q 024610          240 WQGFGMAT  247 (265)
Q Consensus       240 WagsG~at  247 (265)
                      |+.....+
T Consensus       135 ~~~~~~~~  142 (155)
T cd03013         135 YLFVEEDP  142 (155)
T ss_pred             EEEEecCC
Confidence            98877654

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=95.05  E-value=0.12  Score=40.00  Aligned_cols=36  Identities=17%  Similarity=0.110  Sum_probs=27.8

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELS  252 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e  252 (265)
                      .++.+.++|..  ++-+++++ +| +++...|..+.+++.
T Consensus        62 ~~l~~~~~V~~--~PT~~lf~-~g-~~~~~~G~~~~~~l~   97 (100)
T cd02999          62 PSLLSRYGVVG--FPTILLFN-ST-PRVRYNGTRTLDSLA   97 (100)
T ss_pred             HHHHHhcCCee--cCEEEEEc-CC-ceeEecCCCCHHHHH
Confidence            45778888875  89999998 55 778888888777654

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=94.95  E-value=0.24  Score=40.00  Aligned_cols=90  Identities=12%  Similarity=0.050  Sum_probs=57.9

Q ss_pred             CCceEEEEEeeeccchHHHhhhcchhHH------hhccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCcccc
Q 024610          129 IPKVSLVCLTFRASSQAMVDSWSSPFFE------AFSDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQ  202 (265)
Q Consensus       129 ~gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~  202 (265)
                      .|+..||-++         ++||.||..      .+.+..++.++.||++.+.....   .                   
T Consensus        22 ~~~~~iv~f~---------~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~---~-------------------   70 (122)
T TIGR01295        22 KKETATFFIG---------RKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEM---S-------------------   70 (122)
T ss_pred             cCCcEEEEEE---------CCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCc---c-------------------
Confidence            3666777555         899998873      34444567799999875432111   0                   


Q ss_pred             ceeEEEcCChHHHHHHhccc--CCcccEEEEEeCCCcEEEcccC-CCCHHHHHHHH
Q 024610          203 RQIVYSFGDHYYFRKELKIL--NLLTGYIFLLDKFGRIRWQGFG-MATPEELSSLL  255 (265)
Q Consensus       203 ~~~~y~~g~~~~iRe~Lgi~--N~~vGYVyLVD~~grIRWagsG-~at~~E~e~L~  255 (265)
                      ..     .+..++++.+++.  -..+|-+.++. +|+..|+.+| .++.+|++.+.
T Consensus        71 ~~-----~~~~~~~~~~~i~~~i~~~PT~v~~k-~Gk~v~~~~G~~~~~~~l~~~~  120 (122)
T TIGR01295        71 SL-----NDLTAFRSRFGIPTSFMGTPTFVHIT-DGKQVSVRCGSSTTAQELQDIA  120 (122)
T ss_pred             cH-----HHHHHHHHHcCCcccCCCCCEEEEEe-CCeEEEEEeCCCCCHHHHHHHh
Confidence            00     0124455665542  23488888777 9999999999 56799988765

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=94.78  E-value=0.44  Score=35.65  Aligned_cols=41  Identities=15%  Similarity=0.163  Sum_probs=33.1

Q ss_pred             hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610          212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL  255 (265)
Q Consensus       212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~  255 (265)
                      ...+-+.+++..  +|.+++++ +|+++....|..+.++++.+.
T Consensus        55 ~~~l~~~~~i~~--~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~l   95 (96)
T cd02956          55 QPQIAQQFGVQA--LPTVYLFA-AGQPVDGFQGAQPEEQLRQML   95 (96)
T ss_pred             CHHHHHHcCCCC--CCEEEEEe-CCEEeeeecCCCCHHHHHHHh
Confidence            355667778875  99999998 999999999998888887653

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>COG3054 Predicted transcriptional regulator [General function prediction only]

Probab=94.68  E-value=0.12  Score=44.17  Aligned_cols=125  Identities=16%  Similarity=0.149  Sum_probs=78.5

Q ss_pred             CCCceEEEE-EeeeccchHHHhhhcchhHHhhccCCCeeE-EEEecccchhhccccchHHHHHH-HHhcCCCCCccccce
Q 024610          128 AIPKVSLVC-LTFRASSQAMVDSWSSPFFEAFSDSKNVHL-YEVSFIDSWLLCRSPIKRILLKI-MRKSKDAGENVLQRQ  204 (265)
Q Consensus       128 l~gKvSIV~-l~~~~~gq~~~~sw~~p~~e~~~~~~~vqi-v~In~~e~~lk~~~~lk~~~~~~-lrk~~p~~~~~l~~~  204 (265)
                      +.||+-||- |.-+.++.+|-++-++.+..+--.+..+|. --||.+|.-.     =-++|+++ ..++..+  | -|.+
T Consensus        57 L~GKvRV~~hiAGRtsaKE~Na~lieaIk~a~fp~~~YQTTTIiN~DDAi~-----GtgmFVkssae~~Kke--~-pwSq  128 (184)
T COG3054          57 LVGKVRVLQHIAGRTSAKEKNATLIEAIKSAKFPHDRYQTTTIINTDDAIP-----GTGMFVKSSAESNKKE--Y-PWSQ  128 (184)
T ss_pred             ccchhhhhhhhhcccchhhhchHHHHHHHhccCChHHceeeEEeccCCccc-----cccceeecchhhcccc--C-Ccee
Confidence            568887775 555556666655555444332111223443 3466666432     12334333 3333222  1 1445


Q ss_pred             eEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHHHHHhhhc
Q 024610          205 IVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLSCTSLLLE  263 (265)
Q Consensus       205 ~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k~~~~Ll~  263 (265)
                      .+  +++..-.|.+-++.. ...-|.++|++||+-|..-|.-+..|++....-+..|++
T Consensus       129 ~v--lD~~gvak~AWqL~e-~~SaivVlDk~G~VkfvkeGaLt~aevQ~Vi~ll~~l~k  184 (184)
T COG3054         129 FV--LDSNGVAKNAWQLKE-ESSAVVVLDKDGRVKFVKEGALTQAEVQQVIDLLQKLLK  184 (184)
T ss_pred             eE--Eccchhhhhhhcccc-ccceEEEEcCCCcEEEEecCCccHHHHHHHHHHHHHhcC
Confidence            44  577777777888875 677789999999999999999999999998888877763

>PRK09381 trxA thioredoxin; Provisional

Probab=94.35  E-value=0.85  Score=35.00  Aligned_cols=41  Identities=15%  Similarity=0.149  Sum_probs=31.2

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS  256 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k  256 (265)
                      ..+.+.+++..  +|.+++++ +|++++..+|..+++|++.+..
T Consensus        65 ~~~~~~~~v~~--~Pt~~~~~-~G~~~~~~~G~~~~~~l~~~i~  105 (109)
T PRK09381         65 PGTAPKYGIRG--IPTLLLFK-NGEVAATKVGALSKGQLKEFLD  105 (109)
T ss_pred             hhHHHhCCCCc--CCEEEEEe-CCeEEEEecCCCCHHHHHHHHH
Confidence            34455667764  88888885 9999999999998888766544

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=94.19  E-value=0.2  Score=50.71  Aligned_cols=43  Identities=16%  Similarity=0.190  Sum_probs=34.7

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCcE--EEcccCCCCHHHHHHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGRI--RWQGFGMATPEELSSLLSC  257 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~grI--RWagsG~at~~E~e~L~k~  257 (265)
                      .++.+.+++..  +|.++++|++|++  .....|+.+++|+....+-
T Consensus       524 ~~l~~~~~v~g--~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~  568 (571)
T PRK00293        524 VALLKHYNVLG--LPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQ  568 (571)
T ss_pred             HHHHHHcCCCC--CCEEEEECCCCCCcccccccCCCCHHHHHHHHHH
Confidence            45677888876  9999999999999  4788999999887665543

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=93.44  E-value=0.19  Score=40.99  Aligned_cols=27  Identities=7%  Similarity=-0.135  Sum_probs=23.9

Q ss_pred             cccEEEEEeCCCcEEEcccCCCCHHHH
Q 024610          225 LTGYIFLLDKFGRIRWQGFGMATPEEL  251 (265)
Q Consensus       225 ~vGYVyLVD~~grIRWagsG~at~~E~  251 (265)
                      -+|.++++|++|++...+++.|.++|.
T Consensus        80 G~Pt~vfl~~~G~~~~~~~~~~~~~~~  106 (124)
T cd02955          80 GWPLNVFLTPDLKPFFGGTYFPPEDRY  106 (124)
T ss_pred             CCCEEEEECCCCCEEeeeeecCCCCcC
Confidence            599999999999999999999887554

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=93.27  E-value=0.99  Score=33.53  Aligned_cols=40  Identities=10%  Similarity=-0.040  Sum_probs=28.3

Q ss_pred             hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHH
Q 024610          212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSL  254 (265)
Q Consensus       212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L  254 (265)
                      ...+.+.++|..  +|.+++++.++. ...-.|.-+.+++...
T Consensus        58 ~~~~~~~~~i~~--~P~~~~~~~~~~-~~~~~g~~~~~~l~~~   97 (102)
T TIGR01126        58 EKDLASRFGVSG--FPTIKFFPKGKK-PVDYEGGRDLEAIVEF   97 (102)
T ss_pred             hHHHHHhCCCCc--CCEEEEecCCCc-ceeecCCCCHHHHHHH
Confidence            356778888864  999999997774 4555666677765443

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>PRK10996 thioredoxin 2; Provisional

Probab=93.09  E-value=1.5  Score=35.88  Aligned_cols=42  Identities=14%  Similarity=0.146  Sum_probs=32.2

Q ss_pred             hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610          212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS  256 (265)
Q Consensus       212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k  256 (265)
                      ..++.+.+++..  +|-+++.+ +|++...-.|.-+.++++...+
T Consensus        95 ~~~l~~~~~V~~--~Ptlii~~-~G~~v~~~~G~~~~e~l~~~l~  136 (139)
T PRK10996         95 ERELSARFRIRS--IPTIMIFK-NGQVVDMLNGAVPKAPFDSWLN  136 (139)
T ss_pred             CHHHHHhcCCCc--cCEEEEEE-CCEEEEEEcCCCCHHHHHHHHH
Confidence            355677788875  88777766 9999999999988887776543

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=92.85  E-value=0.83  Score=33.30  Aligned_cols=40  Identities=18%  Similarity=-0.012  Sum_probs=33.0

Q ss_pred             hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHH
Q 024610          212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSS  253 (265)
Q Consensus       212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~  253 (265)
                      +..+.+.+++..  +|-+++++++|+..+...|.-+.+++..
T Consensus        60 ~~~~~~~~~i~~--~Pt~~~~~~~~~~~~~~~g~~~~~~i~~   99 (101)
T cd02961          60 NNDLCSEYGVRG--YPTIKLFPNGSKEPVKYEGPRTLESLVE   99 (101)
T ss_pred             hHHHHHhCCCCC--CCEEEEEcCCCcccccCCCCcCHHHHHh
Confidence            367788888875  9999999988899999999888887653

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=92.70  E-value=1.5  Score=36.81  Aligned_cols=43  Identities=12%  Similarity=0.209  Sum_probs=25.6

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCc-EEEcccC--------CCCHHHHHHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGR-IRWQGFG--------MATPEELSSLLSC  257 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~gr-IRWagsG--------~at~~E~e~L~k~  257 (265)
                      .++-+.++|.. ..+.+|+.- +|+ ..|.++|        ..+.+|+..+...
T Consensus        67 ~dla~~y~I~~-~~t~~~ffk-~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~  118 (142)
T PLN00410         67 PDFNTMYELYD-PCTVMFFFR-NKHIMIDLGTGNNNKINWALKDKQEFIDIVET  118 (142)
T ss_pred             HHHHHHcCccC-CCcEEEEEE-CCeEEEEEecccccccccccCCHHHHHHHHHH
Confidence            44555555652 234443444 677 9999999        5666666555443

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=92.55  E-value=1.4  Score=33.01  Aligned_cols=38  Identities=16%  Similarity=0.147  Sum_probs=28.2

Q ss_pred             hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHH
Q 024610          212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELS  252 (265)
Q Consensus       212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e  252 (265)
                      ...+.+.+|+.-  +|.+++. ++|++...-+|+-+.+++.
T Consensus        64 ~~~~~~~~~i~~--~Pt~~~~-~~g~~~~~~~g~~~~~~l~  101 (104)
T cd02997          64 HDALKEEYNVKG--FPTFKYF-ENGKFVEKYEGERTAEDII  101 (104)
T ss_pred             cHHHHHhCCCcc--ccEEEEE-eCCCeeEEeCCCCCHHHHH
Confidence            456778888864  8876555 4899888888888877654

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=92.20  E-value=2.1  Score=30.26  Aligned_cols=40  Identities=15%  Similarity=0.160  Sum_probs=31.4

Q ss_pred             hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHH
Q 024610          212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSL  254 (265)
Q Consensus       212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L  254 (265)
                      ..++.+.+++..  +|.+++++ +|++.+...|..+++++..+
T Consensus        52 ~~~~~~~~~v~~--~P~~~~~~-~g~~~~~~~g~~~~~~l~~~   91 (93)
T cd02947          52 NPELAEEYGVRS--IPTFLFFK-NGKEVDRVVGADPKEELEEF   91 (93)
T ss_pred             ChhHHHhcCccc--ccEEEEEE-CCEEEEEEecCCCHHHHHHH
Confidence            355667778875  88888886 88999999999888777654

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=91.19  E-value=3  Score=31.43  Aligned_cols=39  Identities=10%  Similarity=0.045  Sum_probs=31.5

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSL  254 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L  254 (265)
                      .++-+.+++..  +|-+++++ +|++.....|..+.+++..+
T Consensus        57 ~~l~~~~~v~~--vPt~~i~~-~g~~v~~~~g~~~~~~~~~~   95 (97)
T cd02949          57 QEIAEAAGIMG--TPTVQFFK-DKELVKEISGVKMKSEYREF   95 (97)
T ss_pred             HHHHHHCCCee--ccEEEEEE-CCeEEEEEeCCccHHHHHHh
Confidence            45667777764  88899997 79999999999999886654

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=91.08  E-value=3.2  Score=31.76  Aligned_cols=37  Identities=19%  Similarity=0.011  Sum_probs=25.9

Q ss_pred             hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHH
Q 024610          212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELS  252 (265)
Q Consensus       212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e  252 (265)
                      ..++-+++++..  +| +|++..+|++.....|. +++++.
T Consensus        60 ~~~~~~~~~v~~--~P-t~~~~~~g~~~~~~~G~-~~~~~~   96 (102)
T cd02948          60 TIDTLKRYRGKC--EP-TFLFYKNGELVAVIRGA-NAPLLN   96 (102)
T ss_pred             CHHHHHHcCCCc--Cc-EEEEEECCEEEEEEecC-ChHHHH
Confidence            345667788886  67 45566699999999995 554443

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=90.93  E-value=0.95  Score=36.72  Aligned_cols=43  Identities=12%  Similarity=0.152  Sum_probs=25.4

Q ss_pred             CceEEEEEeeeccchHHHhhhcchhHH-------hhccCC-CeeEEEEecccc
Q 024610          130 PKVSLVCLTFRASSQAMVDSWSSPFFE-------AFSDSK-NVHLYEVSFIDS  174 (265)
Q Consensus       130 gKvSIV~l~~~~~gq~~~~sw~~p~~e-------~~~~~~-~vqiv~In~~e~  174 (265)
                      |++.+|-++  ++-..-=.+||.||..       .....+ ++.++.|++.++
T Consensus        21 ~~~vvV~F~--A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~   71 (119)
T cd02952          21 GKPIFILFY--GDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDR   71 (119)
T ss_pred             CCeEEEEEE--ccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCc
Confidence            677777555  1000000299999872       233344 688999998763

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=90.92  E-value=3.3  Score=32.30  Aligned_cols=39  Identities=10%  Similarity=0.050  Sum_probs=30.2

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSL  254 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L  254 (265)
                      ..+-+.+||.-  +|=+++++ +|++.....|..+.+++..+
T Consensus        69 ~~l~~~~~V~~--~Pt~~i~~-~g~~~~~~~G~~~~~~l~~~  107 (111)
T cd02963          69 RRLARKLGAHS--VPAIVGII-NGQVTFYHDSSFTKQHVVDF  107 (111)
T ss_pred             HHHHHHcCCcc--CCEEEEEE-CCEEEEEecCCCCHHHHHHH
Confidence            45667778864  88788886 99999999999888876443

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>TIGR01068 thioredoxin thioredoxin

Probab=90.68  E-value=4.2  Score=29.80  Aligned_cols=43  Identities=14%  Similarity=0.170  Sum_probs=33.5

Q ss_pred             CChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610          210 GDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL  255 (265)
Q Consensus       210 g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~  255 (265)
                      +....+.+.+|+..  +|.+++.+ +|++.+...|+.+++++....
T Consensus        55 ~~~~~~~~~~~v~~--~P~~~~~~-~g~~~~~~~g~~~~~~l~~~l   97 (101)
T TIGR01068        55 DENPDIAAKYGIRS--IPTLLLFK-NGKEVDRSVGALPKAALKQLI   97 (101)
T ss_pred             CCCHHHHHHcCCCc--CCEEEEEe-CCcEeeeecCCCCHHHHHHHH
Confidence            33456778888886  89888885 899999999998887766554

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=90.06  E-value=3.3  Score=33.44  Aligned_cols=32  Identities=9%  Similarity=0.099  Sum_probs=20.9

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCC
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMAT  247 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at  247 (265)
                      .++-+.++|..  +|.+.+.- +|++.+.-+|...
T Consensus        58 ~~la~~~~V~~--iPTf~~fk-~G~~v~~~~G~~~   89 (114)
T cd02954          58 PDFNKMYELYD--PPTVMFFF-RNKHMKIDLGTGN   89 (114)
T ss_pred             HHHHHHcCCCC--CCEEEEEE-CCEEEEEEcCCCC
Confidence            34555666665  67666666 7888887777544

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>PTZ00051 thioredoxin; Provisional

Probab=89.26  E-value=2.5  Score=31.52  Aligned_cols=37  Identities=16%  Similarity=0.091  Sum_probs=26.1

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSS  253 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~  253 (265)
                      .++.+.+++..  +|.+.+. .+|++.=...|. .++++..
T Consensus        61 ~~~~~~~~v~~--~Pt~~~~-~~g~~~~~~~G~-~~~~~~~   97 (98)
T PTZ00051         61 SEVAEKENITS--MPTFKVF-KNGSVVDTLLGA-NDEALKQ   97 (98)
T ss_pred             HHHHHHCCCce--eeEEEEE-eCCeEEEEEeCC-CHHHhhc
Confidence            45667777865  8875544 699999888885 6666653

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=88.38  E-value=3.5  Score=30.70  Aligned_cols=37  Identities=14%  Similarity=0.085  Sum_probs=27.6

Q ss_pred             HHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHH
Q 024610          214 YFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSS  253 (265)
Q Consensus       214 ~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~  253 (265)
                      ++-+.+++..  +|.++++. +|++...-.|.-+.+++..
T Consensus        64 ~~~~~~~v~~--~Pt~~~~~-~g~~~~~~~G~~~~~~l~~  100 (102)
T cd03005          64 ELCSEFQVRG--YPTLLLFK-DGEKVDKYKGTRDLDSLKE  100 (102)
T ss_pred             hhHhhcCCCc--CCEEEEEe-CCCeeeEeeCCCCHHHHHh
Confidence            4455667664  88888884 8999988999888777653

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

Probab=88.34  E-value=1.3  Score=38.31  Aligned_cols=32  Identities=19%  Similarity=0.076  Sum_probs=24.7

Q ss_pred             cccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEE
Q 024610           93 LAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVC  136 (265)
Q Consensus        93 ~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~  136 (265)
                      +.+..|-++++++++|+.+++.            ..+|||.||.
T Consensus         9 ~~~~siydf~~~d~~G~~v~l~------------~yrGkV~LiV   40 (171)
T KOG1651|consen    9 DEKGSIYDFSAKDLDGEYVSLS------------QYRGKVVLIV   40 (171)
T ss_pred             hhhcceeeeEEecCCCCCccHH------------HhCCeEEEEE
Confidence            4456677999999999998764            3579988874

>PF02484 Rhabdo_NV: Rhabdovirus Non-virion protein; InterPro: IPR003490 Infectious hematopoietic necrosis virus (IHNV) is a member of the family Rhabdoviridae

Probab=87.98  E-value=0.32  Score=37.91  Aligned_cols=39  Identities=26%  Similarity=0.239  Sum_probs=34.4

Q ss_pred             CChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHH
Q 024610          210 GDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPE  249 (265)
Q Consensus       210 g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~  249 (265)
                      .+...+|++|..-|.-.|+=||.| +|+|.|..-|.++=.
T Consensus         8 t~~~al~~~lryk~~va~hgflfd-dg~~vw~e~~d~~w~   46 (111)
T PF02484_consen    8 TNMEALRDALRYKNEVARHGFLFD-DGDIVWSEDDDETWN   46 (111)
T ss_pred             ccHHHHHHHHHHHhhccccceEec-CCcEEEecCChHHHH
Confidence            456889999999999999999999 999999998876643

The non-virion protein (NV) is coded for by one of the six genes of the IHNV genome [], but is absent in vesiculovirus-like rhabdovirus [].

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=87.91  E-value=1.8  Score=34.55  Aligned_cols=22  Identities=23%  Similarity=0.220  Sum_probs=15.1

Q ss_pred             HhcccCCcccEEEEEeCCCcEE
Q 024610          218 ELKILNLLTGYIFLLDKFGRIR  239 (265)
Q Consensus       218 ~Lgi~N~~vGYVyLVD~~grIR  239 (265)
                      .+++.-..+|.++++|++|++.
T Consensus        69 ~~~~~g~~vPt~~f~~~~Gk~~   90 (117)
T cd02959          69 EFSPDGGYIPRILFLDPSGDVH   90 (117)
T ss_pred             hcccCCCccceEEEECCCCCCc
Confidence            3333333488899999999884

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=87.84  E-value=7.4  Score=29.32  Aligned_cols=39  Identities=10%  Similarity=-0.091  Sum_probs=28.8

Q ss_pred             hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCC-HHHHH
Q 024610          212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMAT-PEELS  252 (265)
Q Consensus       212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at-~~E~e  252 (265)
                      ..++-+.++|..  +|-+++.+..|+..+.-.|..+ .+++.
T Consensus        62 ~~~~~~~~~i~~--~Pt~~~~~~g~~~~~~~~G~~~~~~~l~  101 (104)
T cd03004          62 YESLCQQANIRA--YPTIRLYPGNASKYHSYNGWHRDADSIL  101 (104)
T ss_pred             hHHHHHHcCCCc--ccEEEEEcCCCCCceEccCCCCCHHHHH
Confidence            355667778875  8888888866588888888866 66654

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=87.60  E-value=5.7  Score=29.36  Aligned_cols=37  Identities=19%  Similarity=0.212  Sum_probs=27.4

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSS  253 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~  253 (265)
                      .++.+.+++..  +|.+++++ +|++.....|. .++++..
T Consensus        58 ~~~~~~~~i~~--~Pt~~~~~-~g~~~~~~~g~-~~~~l~~   94 (97)
T cd02984          58 PEISEKFEITA--VPTFVFFR-NGTIVDRVSGA-DPKELAK   94 (97)
T ss_pred             HHHHHhcCCcc--ccEEEEEE-CCEEEEEEeCC-CHHHHHH
Confidence            45677788876  88888886 89999998886 4455443

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=87.55  E-value=6.1  Score=30.06  Aligned_cols=40  Identities=15%  Similarity=0.132  Sum_probs=29.0

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS  256 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k  256 (265)
                      .++-+.+++..  +|-+++++ +| +.|...|..+.+++..+.+
T Consensus        62 ~~~~~~~~I~~--~Pt~~l~~-~~-~~~~~~G~~~~~~l~~~~~  101 (104)
T cd03000          62 SSIASEFGVRG--YPTIKLLK-GD-LAYNYRGPRTKDDIVEFAN  101 (104)
T ss_pred             HhHHhhcCCcc--ccEEEEEc-CC-CceeecCCCCHHHHHHHHH
Confidence            45667778875  88888886 44 4577888888888766554

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=87.01  E-value=8.8  Score=30.16  Aligned_cols=42  Identities=19%  Similarity=0.212  Sum_probs=29.7

Q ss_pred             HHHHHHhcccCCcccEEEEEeC---CCcEEEcccCCCCHHHHHHHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDK---FGRIRWQGFGMATPEELSSLLSCT  258 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~---~grIRWagsG~at~~E~e~L~k~~  258 (265)
                      .++.+.+++..  +|-+++.+.   .|++|  ..|.++++|+..+...+
T Consensus        65 ~~l~~~~~v~~--vPt~~i~~~g~~~~~~~--~~G~~~~~el~~~i~~i  109 (113)
T cd02975          65 KEKAEKYGVER--VPTTIFLQDGGKDGGIR--YYGLPAGYEFASLIEDI  109 (113)
T ss_pred             HHHHHHcCCCc--CCEEEEEeCCeecceEE--EEecCchHHHHHHHHHH
Confidence            45667777775  788888874   35665  55788888988776654

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=86.50  E-value=6.6  Score=29.43  Aligned_cols=38  Identities=18%  Similarity=0.079  Sum_probs=26.5

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSL  254 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L  254 (265)
                      ..+.+.+++..  +|-++++ .+|++ ..-.|..+.+++..+
T Consensus        61 ~~~~~~~~i~~--~Pt~~~~-~~g~~-~~~~G~~~~~~l~~~   98 (101)
T cd02994          61 PGLSGRFFVTA--LPTIYHA-KDGVF-RRYQGPRDKEDLISF   98 (101)
T ss_pred             HhHHHHcCCcc--cCEEEEe-CCCCE-EEecCCCCHHHHHHH
Confidence            44566777765  7777776 68887 566788888776554

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=86.22  E-value=6.4  Score=29.75  Aligned_cols=38  Identities=3%  Similarity=-0.143  Sum_probs=25.8

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCC----cEEEcccCCCCHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFG----RIRWQGFGMATPEELS  252 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~g----rIRWagsG~at~~E~e  252 (265)
                      .++-+.+++..  +|.++++++.+    ++...-.|.-+.+++.
T Consensus        64 ~~~~~~~~i~~--~Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~  105 (109)
T cd03002          64 KPLCGKYGVQG--FPTLKVFRPPKKASKHAVEDYNGERSAKAIV  105 (109)
T ss_pred             HHHHHHcCCCc--CCEEEEEeCCCcccccccccccCccCHHHHH
Confidence            45667778875  89999999776    3555556666655554

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=85.54  E-value=4.9  Score=31.69  Aligned_cols=28  Identities=18%  Similarity=0.197  Sum_probs=17.6

Q ss_pred             HHHHhcccCCcccEEEEEeCCCcEEEcccCC
Q 024610          215 FRKELKILNLLTGYIFLLDKFGRIRWQGFGM  245 (265)
Q Consensus       215 iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~  245 (265)
                      +-+.+++..  +|-+.+.. +|+..+..+|.
T Consensus        67 l~~~~~v~~--vPt~l~fk-~G~~v~~~~g~   94 (113)
T cd02989          67 LVEKLNIKV--LPTVILFK-NGKTVDRIVGF   94 (113)
T ss_pred             HHHHCCCcc--CCEEEEEE-CCEEEEEEECc
Confidence            455666665  66565555 77777776554

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=84.67  E-value=1.4  Score=35.01  Aligned_cols=35  Identities=20%  Similarity=0.362  Sum_probs=26.3

Q ss_pred             CceEEEEEeeeccchHHHhhhcchhH------Hhh-ccCCCeeEEEEeccc
Q 024610          130 PKVSLVCLTFRASSQAMVDSWSSPFF------EAF-SDSKNVHLYEVSFID  173 (265)
Q Consensus       130 gKvSIV~l~~~~~gq~~~~sw~~p~~------e~~-~~~~~vqiv~In~~e  173 (265)
                      +|..||=++         ++||.||.      +.+ .++|++.++.|+++|
T Consensus        21 ~kliVvdF~---------a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde   62 (106)
T KOG0907|consen   21 DKLVVVDFY---------ATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE   62 (106)
T ss_pred             CCeEEEEEE---------CCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc
Confidence            366666444         99999986      334 556889999999998

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=83.84  E-value=9.5  Score=28.24  Aligned_cols=38  Identities=13%  Similarity=-0.097  Sum_probs=27.5

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELS  252 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e  252 (265)
                      ..+-+.+++.  .+|-+++++..|+....-.|..+.+++.
T Consensus        65 ~~~~~~~~i~--~~P~~~~~~~~~~~~~~~~g~~~~~~l~  102 (105)
T cd02998          65 KDLAKKYGVS--GFPTLKFFPKGSTEPVKYEGGRDLEDLV  102 (105)
T ss_pred             hhhHHhCCCC--CcCEEEEEeCCCCCccccCCccCHHHHH
Confidence            4566777776  4888999987777777777777766654

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>PF13728 TraF: F plasmid transfer operon protein

Probab=82.16  E-value=7.1  Score=34.69  Aligned_cols=90  Identities=17%  Similarity=0.138  Sum_probs=63.0

Q ss_pred             CCCceEEEEEeeeccchHHHhhhcc---hhHHhhccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccce
Q 024610          128 AIPKVSLVCLTFRASSQAMVDSWSS---PFFEAFSDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQ  204 (265)
Q Consensus       128 l~gKvSIV~l~~~~~gq~~~~sw~~---p~~e~~~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~  204 (265)
                      +.++..||-++..  +    -.+|.   |....|.+.-+++++.||++...+..               .|..       
T Consensus       118 la~~~gL~~F~~~--~----C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~---------------fp~~-------  169 (215)
T PF13728_consen  118 LAQKYGLFFFYRS--D----CPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPS---------------FPNP-------  169 (215)
T ss_pred             HhhCeEEEEEEcC--C----CchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcC---------------CCCC-------
Confidence            4567888855411  1    33554   45567888889999999998844321               2220       


Q ss_pred             eEEEcCChHHHHHHhcccCCcccEEEEEeCCC-cEEEcccCCCCHHHHH
Q 024610          205 IVYSFGDHYYFRKELKILNLLTGYIFLLDKFG-RIRWQGFGMATPEELS  252 (265)
Q Consensus       205 ~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~g-rIRWagsG~at~~E~e  252 (265)
                           -.+.++.+.||+.  .|+-+|||+.++ ++.=.+.|..+.+|+.
T Consensus       170 -----~~~~g~~~~l~v~--~~Pal~Lv~~~~~~~~pv~~G~~s~~~L~  211 (215)
T PF13728_consen  170 -----RPDPGQAKRLGVK--VTPALFLVNPNTKKWYPVSQGFMSLDELE  211 (215)
T ss_pred             -----CCCHHHHHHcCCC--cCCEEEEEECCCCeEEEEeeecCCHHHHH
Confidence                 1135577889996  699999999988 7777889999988875

>KOG4614 consensus Inner membrane protein required for assembly of the F0 sector of ATP synthase [Posttranslational modification, protein turnover, chaperones]

Probab=81.21  E-value=0.84  Score=41.64  Aligned_cols=29  Identities=69%  Similarity=1.121  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHccchhHHHHHhhhcCCe
Q 024610           53 VEKERARLADEMNRGYFADVAELKKHGGK   81 (265)
Q Consensus        53 ~~~rrk~L~~e~~~~yf~D~~~~r~~~GK   81 (265)
                      .+-.|+.+..|+.+|||++++|+..++||
T Consensus        60 ~~~~r~~~~~e~t~~~~~r~KEl~~e~~k   88 (287)
T KOG4614|consen   60 IEDERARLNDEMTRGYFARMKELKEEGGK   88 (287)
T ss_pred             cchHHHHhChhhccCHHHHHHHHHHhccc
Confidence            35667888888888888888888888888

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=80.98  E-value=13  Score=28.64  Aligned_cols=26  Identities=19%  Similarity=0.133  Sum_probs=16.7

Q ss_pred             HHhcccCCcccEEEEEeCCCcEEEcccC
Q 024610          217 KELKILNLLTGYIFLLDKFGRIRWQGFG  244 (265)
Q Consensus       217 e~Lgi~N~~vGYVyLVD~~grIRWagsG  244 (265)
                      +.+++..  +|.+++++..+++...-.|
T Consensus        72 ~~~~v~~--~Pti~~f~~~~~~~~~y~g   97 (109)
T cd02993          72 EELQLKS--FPTILFFPKNSRQPIKYPS   97 (109)
T ss_pred             hhcCCCc--CCEEEEEcCCCCCceeccC
Confidence            3456654  8888888877765544444

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	265
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	99.21
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	99.1
2lrt_A	152	Uncharacterized protein; structural genomics, thio	99.06
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	99.03
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	99.03
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	99.02
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	99.0
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	98.99
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	98.99
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	98.97
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	98.96
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	98.95
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	98.95
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	98.95
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	98.95
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	98.94
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	98.94
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	98.94
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	98.94
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	98.93
3raz_A	151	Thioredoxin-related protein; structural genomics,	98.93
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	98.93
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	98.92
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	98.92
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	98.92
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	98.91
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	98.9
4evm_A	138	Thioredoxin family protein; structural genomics, n	98.9
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	98.9
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	98.9
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	98.88
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	98.88
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	98.88
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	98.88
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	98.87
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	98.87
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	98.87
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	98.86
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	98.86
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	98.86
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	98.85
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	98.85
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	98.84
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	98.83
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	98.83
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	98.8
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	98.79
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	98.77
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	98.77
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	98.77
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	98.24
3me7_A	170	Putative uncharacterized protein; electron transfe	98.75
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	98.74
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	98.73
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	98.72
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	98.71
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	98.71
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	98.69
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	98.68
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	98.68
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	98.68
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	98.67
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	98.66
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	98.65
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	98.63
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	98.62
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	98.61
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	98.61
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	98.61
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	98.61
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	98.61
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	98.59
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	98.59
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	98.59
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	98.58
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	98.57
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	98.55
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	98.54
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	98.53
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	98.53
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	98.53
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	98.52
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	98.51
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	98.5
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	98.49
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	98.47
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	98.46
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	98.42
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	98.39
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	98.37
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	98.35
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	97.7
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	98.35
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	98.34
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	98.34
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	98.29
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	98.29
4eo3_A	322	Bacterioferritin comigratory protein/NADH dehydro;	98.23
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	97.99
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	97.99
2l57_A	126	Uncharacterized protein; structural genomics, unkn	97.94
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	97.55
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	97.55
3tue_A	219	Tryparedoxin peroxidase; thioredoxin fold, peroxir	97.54
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	97.49
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	97.48
2kuc_A	130	Putative disulphide-isomerase; structural genomics	97.26
4f82_A	176	Thioredoxin reductase; structural genomics, niaid,	97.16
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	97.04
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	97.04
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	96.94
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	96.94
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	96.9
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	96.86
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	96.84
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	96.79
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	96.73
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	96.72
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	96.71
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	96.66
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	96.58
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	96.56
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	96.52
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	96.52
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	96.48
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	96.48
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	96.39
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	96.38
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	96.37
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	96.37
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	96.36
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	96.29
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	96.28
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	96.27
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	96.26
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	96.25
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	96.24
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	96.24
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	96.24
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	96.22
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	96.21
2xhf_A	171	Peroxiredoxin 5; oxidoreductase, antioxidant enzym	96.13
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	96.11
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	96.1
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	96.1
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	96.08
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	96.06
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	96.04
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	96.02
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	95.87
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	95.83
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	95.8
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	95.79
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	95.74
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	95.72
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	95.65
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	95.63
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	95.63
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	95.61
1xiy_A	182	Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin	95.52
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	95.52
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	95.41
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	95.36
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	95.36
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	95.17
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	95.15
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	95.13
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	95.12
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	95.1
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	93.59
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	94.39
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	94.15
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	94.14
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	93.94
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	93.8
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	93.72
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	93.58
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	93.06
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	92.98
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	92.92
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	92.88
1mek_A	120	Protein disulfide isomerase; electron transport, r	92.78
3ira_A	173	Conserved protein; methanosarcina mazei,structural	92.77
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	92.12
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	92.03
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	91.96
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	91.56
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	90.53
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	90.2
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	89.83
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	89.26
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	89.57
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	89.37
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	86.88
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	86.78
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	85.15
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	84.92
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	84.73
2qsi_A	137	Putative hydrogenase expression/formation protein;	84.37
4h86_A	199	Peroxiredoxin type-2; oxidoreductase; 2.00A {Sacch	84.02
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	82.37
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	81.9
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	80.56
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	80.35
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	80.12

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=99.21  E-value=2.7e-10  Score=94.73  Aligned_cols=147  Identities=17%  Similarity=0.191  Sum_probs=104.0

Q ss_pred             CCeeeeccCccccccccccCCCceeeCCCC--CeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH
Q 024610           79 GGKIATANKIIIPALAAVKFPDLDVSYSDR--TTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE  156 (265)
Q Consensus        79 ~GK~f~ap~~l~ka~~AlyFPnl~~~~l~G--~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e  156 (265)
                      -++.+..|..+-+...+..+|+|.+.+++|  +++++.+            ++||+.||.++         ++||.+|..
T Consensus        17 ~~~~~~~~~~~~~~~~G~~~P~f~l~~~~g~~~~~~l~~------------~~gk~vll~F~---------a~~C~~C~~   75 (176)
T 3kh7_A           17 RGSHMLDPSELPSALIGKPFPAFDLPSVQDPARRLTEAD------------LKGKPALVNVW---------GTWCPSCRV   75 (176)
T ss_dssp             CCCCCCCGGGSTTTTTTSBCCCCEEEBSSCTTSEEEGGG------------GCSSCEEEEEE---------CTTCHHHHH
T ss_pred             cccccCCcccccccccCCcCCCcEecccCCCCceecHHH------------hCCCEEEEEEE---------CCcCHHHHH
Confidence            355667788888888899999999999999  7776542            35899888665         899999873


Q ss_pred             ------hhccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEE
Q 024610          157 ------AFSDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIF  230 (265)
Q Consensus       157 ------~~~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVy  230 (265)
                            .+.+. ++++|.|+++++.-  .  ++.+    +.+ .+..    ...+  ..+....+.+.+|+..  ++.+|
T Consensus        76 ~~~~l~~l~~~-~v~vv~vs~~d~~~--~--~~~~----~~~-~~~~----~~~~--~~d~~~~~~~~~~v~~--~P~~~  137 (176)
T 3kh7_A           76 EHPELTRLAEQ-GVVIYGINYKDDNA--A--AIKW----LNE-LHNP----YLLS--ISDADGTLGLDLGVYG--APETY  137 (176)
T ss_dssp             HHHHHHHHHHT-TCEEEEEEESCCHH--H--HHHH----HHH-TTCC----CSEE--EEETTCHHHHHHTCCS--SCEEE
T ss_pred             HHHHHHHHHHC-CCEEEEEeCCCCHH--H--HHHH----HHH-cCCC----CceE--EECCcchHHHHcCCCC--CCeEE
Confidence                  33334 79999999876432  1  2232    222 2211    1111  2355678899999986  89999


Q ss_pred             EEeCCCcEEEcccCCCCHHHHH-HHHHHHHhhhcC
Q 024610          231 LLDKFGRIRWQGFGMATPEELS-SLLSCTSLLLEG  264 (265)
Q Consensus       231 LVD~~grIRWagsG~at~~E~e-~L~k~~~~Ll~e  264 (265)
                      |||++|+|+|...|..++++++ .|.+.++.|..+
T Consensus       138 lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~l~~~  172 (176)
T 3kh7_A          138 LIDKQGIIRHKIVGVVDQKVWREQLAPLYQQLLDE  172 (176)
T ss_dssp             EECTTCBEEEEEESCCCHHHHHHHTHHHHHHHHC-
T ss_pred             EECCCCeEEEEEcCCCCHHHHHHHHHHHHHHHhhc
Confidence            9999999999999998888765 444555655543

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=99.10  E-value=3.5e-10  Score=91.82  Aligned_cols=134  Identities=10%  Similarity=0.023  Sum_probs=93.9

Q ss_pred             cccccCCCce--eeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhcc
Q 024610           93 LAAVKFPDLD--VSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSD  160 (265)
Q Consensus        93 ~~AlyFPnl~--~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~  160 (265)
                      ..+...|+|.  +.+.+|+++++.+            ++||++||.+|  +      .+||.+|..          .+. 
T Consensus         8 ~~G~~~P~f~~~l~~~~G~~~~l~~------------~~gk~~vl~F~--~------~~~c~~C~~~~~~l~~~~~~~~-   66 (163)
T 3gkn_A            8 VLELPAATFDLPLSLSGGTQTTLRA------------HAGHWLVIYFY--P------KDSTPGATTEGLDFNALLPEFD-   66 (163)
T ss_dssp             CCCCCGGGGGCCEECSTTCEECSGG------------GTTSCEEEEEC--S------CTTSHHHHHHHHHHHHHHHHHH-
T ss_pred             ccCCcCCCccccccCCCCCEEEHHH------------hCCCcEEEEEe--C------CCCCCcHHHHHHHHHHHHHHHH-
Confidence            3456789999  9999999997643            36898777554  1      389998863          222 


Q ss_pred             CCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCc----------ccEEE
Q 024610          161 SKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLL----------TGYIF  230 (265)
Q Consensus       161 ~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~----------vGYVy  230 (265)
                      ..++++|.|++++...     ++.+ ...  .+.+        ..+ ..+....+.+++|+....          ++.+|
T Consensus        67 ~~~~~vv~vs~d~~~~-----~~~~-~~~--~~~~--------~~~-~~d~~~~~~~~~~v~~~~~~~~~~~~~~~p~~~  129 (163)
T 3gkn_A           67 KAGAKILGVSRDSVKS-----HDNF-CAK--QGFA--------FPL-VSDGDEALCRAFDVIKEKNMYGKQVLGIERSTF  129 (163)
T ss_dssp             HTTCEEEEEESSCHHH-----HHHH-HHH--HCCS--------SCE-EECTTCHHHHHTTCEEEEEETTEEEEEECCEEE
T ss_pred             HCCCEEEEEeCCCHHH-----HHHH-HHH--hCCC--------ceE-EECCcHHHHHHhCCccccccccccccCcceEEE
Confidence            2479999999974211     2332 111  1222        122 235667888999987522          78999


Q ss_pred             EEeCCCcEEEcccCCCCHHHHHHHHHHHHhhhcC
Q 024610          231 LLDKFGRIRWQGFGMATPEELSSLLSCTSLLLEG  264 (265)
Q Consensus       231 LVD~~grIRWagsG~at~~E~e~L~k~~~~Ll~e  264 (265)
                      |||++|+|+|...|..+++..+.+.+.++.|.++
T Consensus       130 lid~~G~i~~~~~~~~~~~~~~~il~~l~~l~~~  163 (163)
T 3gkn_A          130 LLSPEGQVVQAWRKVKVAGHADAVLAALKAHAKQ  163 (163)
T ss_dssp             EECTTSCEEEEECSCCSTTHHHHHHHHHHHHCC-
T ss_pred             EECCCCeEEEEEcCCCcccCHHHHHHHHHHHhcC
Confidence            9999999999998888888889999999888764

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=99.06  E-value=3.5e-09  Score=85.66  Aligned_cols=118  Identities=13%  Similarity=0.096  Sum_probs=84.2

Q ss_pred             cccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCC
Q 024610           93 LAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSK  162 (265)
Q Consensus        93 ~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~  162 (265)
                      ..+..+|++.+.+++|+++++.+            ++||+.||.++         ++||.+|..          .+.+ .
T Consensus        10 ~~g~~~p~f~l~~~~G~~~~l~~------------~~gk~vll~F~---------a~wC~~C~~~~~~l~~l~~~~~~-~   67 (152)
T 2lrt_A           10 IKEASIIDIQLKDLKGNTRSLTD------------LKGKVVLIDFT---------VYNNAMSAAHNLALRELYNKYAS-Q   67 (152)
T ss_dssp             SCTTCSCCCCEEBTTSCEECTTT------------GGGSEEEEEEE---------CTTCHHHHHHHHHHHHHHHHHGG-G
T ss_pred             ccCCCCCCeEEEcCCCCEEeHHH------------hCCCEEEEEEE---------cCCChhhHHHHHHHHHHHHHhcc-C
Confidence            34567999999999999987652            35899888665         789999873          2222 2


Q ss_pred             CeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHH---HHHHhcccCCcccEEEEEeCCCcEE
Q 024610          163 NVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYY---FRKELKILNLLTGYIFLLDKFGRIR  239 (265)
Q Consensus       163 ~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~---iRe~Lgi~N~~vGYVyLVD~~grIR  239 (265)
                      ++++|.|++++..-  .  ++.+    + ...+.        .+ ..+....   +.+.+|+..  ++.+||||++|+|+
T Consensus        68 ~~~vv~i~~d~~~~--~--~~~~----~-~~~~~--------~~-~~d~~~~~~~~~~~~~v~~--~P~~~lid~~G~i~  127 (152)
T 2lrt_A           68 GFEIYQISLDGDEH--F--WKTS----A-DNLPW--------VC-VRDANGAYSSYISLYNVTN--LPSVFLVNRNNELS  127 (152)
T ss_dssp             TEEEEEEECSCCHH--H--HHHH----H-TTCSS--------EE-EECSSGGGCHHHHHHTCCS--CSEEEEEETTTEEE
T ss_pred             CeEEEEEEccCCHH--H--HHHH----H-hCCCc--------eE-EECCCCcchHHHHHcCccc--CceEEEECCCCeEE
Confidence            69999999987531  1  2222    1 22332        11 1344443   889999985  99999999999999


Q ss_pred             EcccCCCCHHHHH
Q 024610          240 WQGFGMATPEELS  252 (265)
Q Consensus       240 WagsG~at~~E~e  252 (265)
                      +...|..+.++..
T Consensus       128 ~~~~g~~~~e~~~  140 (152)
T 2lrt_A          128 ARGENIKDLDEAI  140 (152)
T ss_dssp             EETTTCSCHHHHH
T ss_pred             EecCCHHHHHHHH
Confidence            9999998776654

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=99.03  E-value=3.9e-09  Score=84.43  Aligned_cols=127  Identities=17%  Similarity=0.159  Sum_probs=86.4

Q ss_pred             cccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcch--hHH----------hhcc
Q 024610           93 LAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSP--FFE----------AFSD  160 (265)
Q Consensus        93 ~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p--~~e----------~~~~  160 (265)
                      ..+..+|+|.+.+++|+++++..          ..++||++||.+|         ++||.|  |..          .+..
T Consensus         6 ~~G~~~p~f~l~~~~g~~~~l~~----------~~~~gk~vll~F~---------a~~C~~v~C~~~~~~l~~l~~~~~~   66 (150)
T 3fw2_A            6 EIGKYAPFFSLPNAKGEKITRSS----------DAFKQKSLLINFW---------ASWNDSISQKQSNSELREIYKKYKK   66 (150)
T ss_dssp             STTSBCCCCCEEBTTCCEECTTS----------TTTTTSEEEEEEE---------CTTCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             cCCCcCCccEeECCCCCEEecch----------hhhCCCEEEEEEE---------eCCCCchHHHHHHHHHHHHHHHhcc
Confidence            34567999999999999997641          0236899988666         899999  973          2324


Q ss_pred             CCCeeEEEEecccchhhccccchHHHHHHHHh-cCCCCCccccceeEEEcCC---hHHHHHHhcccCCcccEEEEEeCCC
Q 024610          161 SKNVHLYEVSFIDSWLLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGD---HYYFRKELKILNLLTGYIFLLDKFG  236 (265)
Q Consensus       161 ~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~---~~~iRe~Lgi~N~~vGYVyLVD~~g  236 (265)
                      .+++++|.|+++++.-  .  ++.+    +++ ++++      .. +  .+.   ...+.+.+|+..  ++.+||||++|
T Consensus        67 ~~~~~~v~v~~d~~~~--~--~~~~----~~~~~~~~------~~-~--~d~~~~~~~~~~~~~v~~--~P~~~lid~~G  127 (150)
T 3fw2_A           67 NKYIGMLGISLDVDKQ--Q--WKDA----IKRDTLDW------EQ-V--CDFGGLNSEVAKQYSIYK--IPANILLSSDG  127 (150)
T ss_dssp             CSSEEEEEEECCSCHH--H--HHHH----HHHTTCCS------EE-E--CCSCGGGCHHHHHTTCCS--SSEEEEECTTS
T ss_pred             CCCeEEEEEEcCCCHH--H--HHHH----HHHhCCCc------eE-E--EcCcccchHHHHHcCCCc--cCeEEEECCCC
Confidence            4679999999987521  1  2332    222 2222      11 1  233   467899999984  99999999999


Q ss_pred             cEEEcccCCCCHHHHHHHHHHHHhhhc
Q 024610          237 RIRWQGFGMATPEELSSLLSCTSLLLE  263 (265)
Q Consensus       237 rIRWagsG~at~~E~e~L~k~~~~Ll~  263 (265)
                      +|++...   ++++++   +.++.|++
T Consensus       128 ~i~~~~~---~~~~l~---~~l~~ll~  148 (150)
T 3fw2_A          128 KILAKNL---RGEELK---KKIENIVE  148 (150)
T ss_dssp             BEEEESC---CHHHHH---HHHHHHHH
T ss_pred             EEEEccC---CHHHHH---HHHHHHHh
Confidence            9999985   555544   34444443

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.03  E-value=4e-09  Score=85.93  Aligned_cols=131  Identities=18%  Similarity=0.089  Sum_probs=91.1

Q ss_pred             cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCce-EEEEEeeeccchHHHhhhcchhHH----------hhccCCC
Q 024610           95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKV-SLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKN  163 (265)
Q Consensus        95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKv-SIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~  163 (265)
                      +..+|+|.+.+++|+++++.+            ++||+ .||.+| .       ++||.+|..          .+. ..+
T Consensus         5 G~~~P~f~l~~~~G~~~~l~~------------~~gk~~vvl~F~-~-------a~~C~~C~~~~~~l~~~~~~~~-~~~   63 (161)
T 3drn_A            5 GDKAPLFEGIADNGEKISLSD------------YIGKHNIVLYFY-P-------KDDTPGSTREASAFRDNWDLLK-DYD   63 (161)
T ss_dssp             TSBCCCCEEEETTSCEEEGGG------------TTTTSEEEEEEC-S-------CTTCHHHHHHHHHHHHTHHHHH-TTC
T ss_pred             CCcCCCeEeecCCCCEEEHHH------------hcCCCCEEEEEE-c-------CCCCCchHHHHHHHHHHHHHHH-HcC
Confidence            456899999999999998653            35887 666433 2       789998863          222 236


Q ss_pred             eeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccC--CcccEEEEEeCCCcEEEc
Q 024610          164 VHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILN--LLTGYIFLLDKFGRIRWQ  241 (265)
Q Consensus       164 vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N--~~vGYVyLVD~~grIRWa  241 (265)
                      +++|.|++++..   .  ++.+    +++ .+.      ...+ ..+....+.+.+|+..  ..++.+||||++|+|+|.
T Consensus        64 v~vv~vs~d~~~---~--~~~~----~~~-~~~------~~~~-~~d~~~~~~~~~~v~~~~~~~P~~~lid~~G~i~~~  126 (161)
T 3drn_A           64 VVVIGVSSDDIN---S--HKRF----KEK-YKL------PFIL-VSDPDKKIRELYGAKGFILPARITFVIDKKGIIRHI  126 (161)
T ss_dssp             EEEEEEESCCHH---H--HHHH----HHH-TTC------CSEE-EECTTSHHHHHTTCCCSSSCCCEEEEECTTSBEEEE
T ss_pred             CEEEEEeCCCHH---H--HHHH----HHH-hCC------CceE-EECCcHHHHHHcCCCCcCcccceEEEECCCCEEEEE
Confidence            999999997521   1  2333    111 121      1222 2466678899999973  337899999999999999


Q ss_pred             ccC-CCCHHHHHHHHHHHHhhhc
Q 024610          242 GFG-MATPEELSSLLSCTSLLLE  263 (265)
Q Consensus       242 gsG-~at~~E~e~L~k~~~~Ll~  263 (265)
                      ..| ..++++++.+.+.++.|..
T Consensus       127 ~~g~~~~~~~~~~il~~l~~l~~  149 (161)
T 3drn_A          127 YNSQMNPANHVNEALKALKQIKE  149 (161)
T ss_dssp             EECSSCTTHHHHHHHHHHHHHHH
T ss_pred             EecCCCCCcCHHHHHHHHHHhhh
Confidence            999 5667788888888887754

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=99.02  E-value=1.5e-09  Score=89.00  Aligned_cols=130  Identities=12%  Similarity=0.169  Sum_probs=79.5

Q ss_pred             cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHhhc---------cCCCee
Q 024610           95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEAFS---------DSKNVH  165 (265)
Q Consensus        95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~~~---------~~~~vq  165 (265)
                      +...|+|++.+.+|+++++.+            ++||+.||.+| +       ++||.+|.....         ...+++
T Consensus         7 G~~aPdF~l~~~~G~~~~l~d------------~~Gk~vvl~f~-~-------~~~c~~C~~e~~~l~~~~~~~~~~~~~   66 (157)
T 4g2e_A            7 GELAPDFELPDTELKKVKLSA------------LKGKVVVLAFY-P-------AAFTQVCTKEMCTFRDSMAKFNQVNAV   66 (157)
T ss_dssp             TSBCCCCEEEBTTSCEEEGGG------------GTTSCEEEEEC-S-------CTTCCC------CCSCGGGGGGGCSSE
T ss_pred             CCCCcCeEeECCCCCEEeHHH------------HCCCeEEEEec-C-------CCCCCccccchhhcccccccccccCce
Confidence            456899999999999998653            36898777554 2       799999874221         224799


Q ss_pred             EEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCc---------ccEEEEEeCCC
Q 024610          166 LYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLL---------TGYIFLLDKFG  236 (265)
Q Consensus       166 iv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~---------vGYVyLVD~~g  236 (265)
                      +|.||.++...     ++.+     .+..+-      ...+ ..+....+-+++|+....         .+.+||||++|
T Consensus        67 ~v~vs~d~~~~-----~~~~-----~~~~~~------~~p~-l~D~~~~v~~~ygv~~~~~~~~~~~~~~p~tflID~~G  129 (157)
T 4g2e_A           67 VLGISVDPPFS-----NKAF-----KEHNKL------NFTI-LSDYNREVVKKYNVAWEFPALPGYVLAKRAVFVIDKEG  129 (157)
T ss_dssp             EEEEESSCHHH-----HHHH-----HHHTTC------CSEE-EECTTSHHHHHTTCEEECTTSTTCEEECEEEEEECTTS
T ss_pred             EeeecccchhH-----HHHH-----HHHcCC------cEEE-EEcCCcHHHHHcCCccccccCCCcceeeeeEEEECCCC
Confidence            99999875321     2332     111111      1222 246667788899885321         34589999999


Q ss_pred             cEEEcccCCCCH--HHHHHHHHHHHhh
Q 024610          237 RIRWQGFGMATP--EELSSLLSCTSLL  261 (265)
Q Consensus       237 rIRWagsG~at~--~E~e~L~k~~~~L  261 (265)
                      +|||+.-|....  ...+.+.+.++.|
T Consensus       130 ~I~~~~~~~~~~~~~~~~eil~~l~~L  156 (157)
T 4g2e_A          130 KVRYKWVSDDPTKEPPYDEIEKVVKSL  156 (157)
T ss_dssp             BEEEEEEESSTTCCCCHHHHHHHHHHT
T ss_pred             EEEEEEECCCCCCCCCHHHHHHHHHHh
Confidence            999987654222  1234445555544

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=99.00  E-value=7.3e-09  Score=81.47  Aligned_cols=129  Identities=19%  Similarity=0.141  Sum_probs=85.9

Q ss_pred             cccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCC
Q 024610           93 LAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSK  162 (265)
Q Consensus        93 ~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~  162 (265)
                      ..+..+|++.+.+++|+++++...          .++||+.||.++         ++||.+|..          .+....
T Consensus         6 ~~g~~~p~~~l~~~~g~~~~l~~~----------~~~gk~vll~F~---------~~~C~~C~~~~~~l~~l~~~~~~~~   66 (148)
T 3fkf_A            6 TVGKSAPYFSLPNEKGEKLSRSAE----------RFRNRYLLLNFW---------ASWCDPQPEANAELKRLNKEYKKNK   66 (148)
T ss_dssp             CTTSBCCCCCEEBTTSCEECTTST----------TTTTSEEEEEEE---------CGGGCCCHHHHHHHHHHHHHTTTCT
T ss_pred             cCCCcCCCeEeeCCCCCEEecccc----------ccCCcEEEEEEE---------CCCCHHHHHHhHHHHHHHHHhcCCC
Confidence            345679999999999999976510          136899988666         899998862          222345


Q ss_pred             CeeEEEEecccchhhccccchHHHHHHHHh-cCCCCCccccceeEEEcCC---hHHHHHHhcccCCcccEEEEEeCCCcE
Q 024610          163 NVHLYEVSFIDSWLLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGD---HYYFRKELKILNLLTGYIFLLDKFGRI  238 (265)
Q Consensus       163 ~vqiv~In~~e~~lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~---~~~iRe~Lgi~N~~vGYVyLVD~~grI  238 (265)
                      +++++.|++++..-  .  ++.+    +++ +.++      . .+  .+.   ...+.+.+|+..  ++.+||+|++|+|
T Consensus        67 ~~~~v~v~~d~~~~--~--~~~~----~~~~~~~~------~-~~--~d~~~~~~~~~~~~~v~~--~P~~~lid~~G~i  127 (148)
T 3fkf_A           67 NFAMLGISLDIDRE--A--WETA----IKKDTLSW------D-QV--CDFTGLSSETAKQYAILT--LPTNILLSPTGKI  127 (148)
T ss_dssp             TEEEEEEECCSCHH--H--HHHH----HHHTTCCS------E-EE--CCSCGGGCHHHHHTTCCS--SSEEEEECTTSBE
T ss_pred             CeEEEEEECCCCHH--H--HHHH----HHHcCCCc------e-EE--EccCCcchHHHHhcCCCC--cCEEEEECCCCeE
Confidence            69999999987421  1  2222    222 2222      1 11  233   567889999985  9999999999999


Q ss_pred             EEcccCCCCHHHHHHHHHHHHhhhcCC
Q 024610          239 RWQGFGMATPEELSSLLSCTSLLLEGE  265 (265)
Q Consensus       239 RWagsG~at~~E~e~L~k~~~~Ll~e~  265 (265)
                      ++...   ++++   |.+.++.|+++|
T Consensus       128 ~~~~~---~~~~---l~~~l~~ll~~e  148 (148)
T 3fkf_A          128 LARDI---QGEA---LTGKLKELLKTE  148 (148)
T ss_dssp             EEESC---CHHH---HHHHHHHHC---
T ss_pred             EEecC---CHHH---HHHHHHHHHccC
Confidence            99987   4444   555566666654

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=98.99  E-value=6.8e-09  Score=81.65  Aligned_cols=128  Identities=19%  Similarity=0.161  Sum_probs=86.6

Q ss_pred             cccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCC
Q 024610           93 LAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSK  162 (265)
Q Consensus        93 ~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~  162 (265)
                      ..+..+|++.+.+++|+++++.+            ++||+.||.++         ++||.+|..          .+.+ .
T Consensus         6 ~~G~~~p~~~l~~~~g~~~~l~~------------~~gk~vll~f~---------~~~C~~C~~~~~~l~~l~~~~~~-~   63 (148)
T 3hcz_A            6 LLGKKAPNLYMTDTTGTYRYLYD------------VQAKYTILFFW---------DSQCGHCQQETPKLYDWWLKNRA-K   63 (148)
T ss_dssp             CTTSBCCCCCCBCTTSCBCCGGG------------CCCSEEEEEEE---------CGGGCTTCSHHHHHHHHHHHHGG-G
T ss_pred             CCCCcCCceEEecCCCCEEEhHH------------cCCCEEEEEEE---------CCCCccHHHHHHHHHHHHHHhcc-C
Confidence            34667999999999999987653            36899888665         899998762          2222 2


Q ss_pred             CeeEEEEecccchhhccccchHHHHHHHHh-cCCCCCccccceeEEEcCChHH--HHHHhcccCCcccEEEEEeCCCcEE
Q 024610          163 NVHLYEVSFIDSWLLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGDHYY--FRKELKILNLLTGYIFLLDKFGRIR  239 (265)
Q Consensus       163 ~vqiv~In~~e~~lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~~~~--iRe~Lgi~N~~vGYVyLVD~~grIR  239 (265)
                      ++++|.|+++++.-  .  ++.+    +++ +.+.       ..+ ..+....  +.+.+|+..  ++.+||+|++|+|+
T Consensus        64 ~~~~v~v~~d~~~~--~--~~~~----~~~~~~~~-------~~~-~~d~~~~~~~~~~~~i~~--~P~~~lid~~G~i~  125 (148)
T 3hcz_A           64 GIQVYAANIERKDE--E--WLKF----IRSKKIGG-------WLN-VRDSKNHTDFKITYDIYA--TPVLYVLDKNKVII  125 (148)
T ss_dssp             TEEEEEEECCSSSH--H--HHHH----HHHHTCTT-------SEE-EECTTCCCCHHHHHCCCS--SCEEEEECTTCBEE
T ss_pred             CEEEEEEEecCCHH--H--HHHH----HHHcCCCC-------ceE-EeccccchhHHHhcCcCC--CCEEEEECCCCcEE
Confidence            69999999986432  1  2332    122 2221       111 1344444  889999985  99999999999999


Q ss_pred             EcccCCCCHHHHHHHHHHHHhhhc
Q 024610          240 WQGFGMATPEELSSLLSCTSLLLE  263 (265)
Q Consensus       240 WagsG~at~~E~e~L~k~~~~Ll~  263 (265)
                      +...|.   ++++.+.+.+..+++
T Consensus       126 ~~~~g~---~~~~~~l~~l~~~l~  146 (148)
T 3hcz_A          126 AKRIGY---ENLDDFLVQYEKSLK  146 (148)
T ss_dssp             EESCCG---GGHHHHHHHHHHHHH
T ss_pred             EecCCH---HHHHHHHHHHHHHhc
Confidence            999887   555555555555543

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=98.99  E-value=5.2e-09  Score=84.56  Aligned_cols=125  Identities=13%  Similarity=0.069  Sum_probs=90.3

Q ss_pred             cccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH------hh-ccC--CC
Q 024610           93 LAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE------AF-SDS--KN  163 (265)
Q Consensus        93 ~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~-~~~--~~  163 (265)
                      ..+..+|++.+.+++|+++++.+            ++||+.||.++         .+||.+|..      .+ ...  .+
T Consensus        16 ~~G~~~p~f~l~~~~g~~~~l~~------------~~gk~vll~F~---------~~~C~~C~~~~~~l~~~~~~~~~~~   74 (158)
T 3hdc_A           16 RTGALAPNFKLPTLSGENKSLAQ------------YRGKIVLVNFW---------ASWCPYCRDEMPSMDRLVKSFPKGD   74 (158)
T ss_dssp             CTTSBCCCCEEECTTSCEEESGG------------GTTSEEEEEEE---------CTTCHHHHHHHHHHHHHHHHSSTTS
T ss_pred             CCCCcCCCceeEcCCCCEEehHH------------hCCCEEEEEEE---------CCcCHHHHHHHHHHHHHHHHcccCC
Confidence            34567899999999999998653            36898888666         899998863      11 222  47


Q ss_pred             eeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEccc
Q 024610          164 VHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGF  243 (265)
Q Consensus       164 vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWags  243 (265)
                      +++|.|++++.+. .+  +        ++ .+.      ...+ ..+....+.+.+|+..  ++.+||||++|+|++...
T Consensus        75 ~~~v~v~~d~~~~-~~--~--------~~-~~~------~~~~-~~d~~~~~~~~~~v~~--~P~~~lid~~G~i~~~~~  133 (158)
T 3hdc_A           75 LVVLAVNVEKRFP-EK--Y--------RR-APV------SFNF-LSDATGQVQQRYGANR--LPDTFIVDRKGIIRQRVT  133 (158)
T ss_dssp             EEEEEEECSSSCC-GG--G--------GG-CCC------SCEE-EECTTSHHHHHTTCCS--SSEEEEECTTSBEEEEEE
T ss_pred             eEEEEEeCCHHHH-HH--H--------HH-cCC------CceE-EECchHHHHHHhCCCC--cceEEEEcCCCCEEEEEe
Confidence            9999999988322 22  1        11 111      1112 2466678999999985  999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 024610          244 GMATPEELSSLLSCTS  259 (265)
Q Consensus       244 G~at~~E~e~L~k~~~  259 (265)
                      |+.+.++-+.+.+-.+
T Consensus       134 G~~~~~~~~~~~~~~~  149 (158)
T 3hdc_A          134 GGIEWDAPKVVSYLKS  149 (158)
T ss_dssp             SCCCTTSHHHHHHHHT
T ss_pred             CCCccchHHHHHHHHh
Confidence            9988888777765443

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=98.97  E-value=1e-08  Score=80.69  Aligned_cols=120  Identities=15%  Similarity=0.108  Sum_probs=82.1

Q ss_pred             cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh---hcc---------CC
Q 024610           95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA---FSD---------SK  162 (265)
Q Consensus        95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~---~~~---------~~  162 (265)
                      +...|++.+.+++|+++++.+            ++||+.||.++         ++||.+|...   +.+         ..
T Consensus         4 G~~~p~f~l~~~~g~~~~l~~------------~~gk~vll~F~---------a~~C~~C~~~~~~l~~~~~l~~~~~~~   62 (142)
T 3ewl_A            4 GMKAADFTYVTVHGDNSRMSR------------LKAQYTMLFFY---------DPDCSNCRKFEKLFAEIPAFVEMVENG   62 (142)
T ss_dssp             TSBCCCCEEECTTCCEEEGGG------------CCCSEEEEEEC---------CSSCHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred             CCcCCCCEEECCCCCEEEhhh------------cCCCEEEEEEE---------CCCCccHHHHHHHHHHhHHHHHHhccC
Confidence            457899999999999998653            35899888665         8999998743   111         24


Q ss_pred             CeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHH--HhcccCCcccEEEEEeCCCcEEE
Q 024610          163 NVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRK--ELKILNLLTGYIFLLDKFGRIRW  240 (265)
Q Consensus       163 ~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe--~Lgi~N~~vGYVyLVD~~grIRW  240 (265)
                      ++++|.|+++++.-  .  ++.+     .+..+.      ...+ ..+....+..  .+|+.-  ++.+||||++|+|++
T Consensus        63 ~~~~v~v~~d~~~~--~--~~~~-----~~~~~~------~~~~-~~d~~~~~~~~~~~~v~~--~P~~~lid~~G~i~~  124 (142)
T 3ewl_A           63 TLRVLAIYPDENRE--E--WATK-----AVYMPQ------GWIV-GWNKAGDIRTRQLYDIRA--TPTIYLLDGRKRVIL  124 (142)
T ss_dssp             SEEEEEEECSSCHH--H--HHHH-----HTTSCT------TCEE-EECTTCHHHHTTCSCCCS--SSEEEEECTTCBEEE
T ss_pred             CeEEEEEEecCCHH--H--HHHH-----HHHcCC------Ccce-eeCCccchhhHHHcCCCC--CCeEEEECCCCCEEe
Confidence            69999999986432  1  2222     222221      1122 2455555655  788774  999999999999999


Q ss_pred             cccCCCCHHHHHHHHH
Q 024610          241 QGFGMATPEELSSLLS  256 (265)
Q Consensus       241 agsG~at~~E~e~L~k  256 (265)
                         +..++++++.+.+
T Consensus       125 ---~~~~~~~l~~~l~  137 (142)
T 3ewl_A          125 ---KDTSMEQLIDYLA  137 (142)
T ss_dssp             ---CSCCHHHHHHHHH
T ss_pred             ---cCCCHHHHHHHHH
Confidence               4467787776554

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=98.96  E-value=7.7e-09  Score=85.05  Aligned_cols=145  Identities=15%  Similarity=0.089  Sum_probs=90.9

Q ss_pred             CCeeeeccCccccccccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh-
Q 024610           79 GGKIATANKIIIPALAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA-  157 (265)
Q Consensus        79 ~GK~f~ap~~l~ka~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~-  157 (265)
                      +|+.........+  ....+|++.+.+.+|+++++.+            ++||+.||.+|  .      .+||.+|... 
T Consensus        10 ~~~~~~~~~~~l~--~g~~~P~f~l~~~~G~~~~l~~------------~~gk~vvl~f~--~------~~~C~~C~~~~   67 (171)
T 2yzh_A           10 KGNPVTLVGPELK--VGDRAPEAVVVTKDLQEKIVGG------------AKDVVQVIITV--P------SLDTPVCETET   67 (171)
T ss_dssp             TTEEEEBCSCCCC--TTSBCCCEEEEETTSCEEEESS------------CCSSEEEEEEC--S------CTTSHHHHHHH
T ss_pred             CCceEeecCCcCC--CCCcCCceEEECCCCCEeeHHH------------hCCCeEEEEEE--C------CCCCCchHHHH
Confidence            5555544433332  3446899999999999998653            36898777544  1      6899988631 


Q ss_pred             ------hccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcC-ChHHHHHHhcccCC------
Q 024610          158 ------FSDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFG-DHYYFRKELKILNL------  224 (265)
Q Consensus       158 ------~~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g-~~~~iRe~Lgi~N~------  224 (265)
                            .....++++|-|++++.-.     ++.+     .+..+.     ....++ .+ ....+ +++|+...      
T Consensus        68 ~~l~~~~~~~~~v~vv~Is~d~~~~-----~~~~-----~~~~~~-----~~~~~l-~D~~~~~~-~~~gv~~~~~~~~g  130 (171)
T 2yzh_A           68 KKFNEIMAGMEGVDVTVVSMDLPFA-----QKRF-----CESFNI-----QNVTVA-SDFRYRDM-EKYGVLIGEGALKG  130 (171)
T ss_dssp             HHHHHHTTTCTTEEEEEEESSCHHH-----HHHH-----HHHTTC-----CSSEEE-ECTTTCGG-GGGTCBBCSSTTTT
T ss_pred             HHHHHHHHHcCCceEEEEeCCCHHH-----HHHH-----HHHcCC-----CCeEEe-ecCccCcH-HHhCCEecccccCC
Confidence                  2222689999999875321     2332     111221     012222 35 45678 99998743      


Q ss_pred             -cccEEEEEeCCCcEEEcccCC--CCHHHHHHHHHHHHhhh
Q 024610          225 -LTGYIFLLDKFGRIRWQGFGM--ATPEELSSLLSCTSLLL  262 (265)
Q Consensus       225 -~vGYVyLVD~~grIRWagsG~--at~~E~e~L~k~~~~Ll  262 (265)
                       .++.+||||++|+|++...|.  ....+.+.+.+.++.||
T Consensus       131 ~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~ll~~l~~ll  171 (171)
T 2yzh_A          131 ILARAVFIIDKEGKVAYVQLVPEITEEPNYDEVVNKVKELI  171 (171)
T ss_dssp             SBCCEEEEECTTSBEEEEEECSBTTSCCCCHHHHHHHHHC-
T ss_pred             ceeeEEEEEcCCCeEEEEEeCCCcCCCCCHHHHHHHHHhhC
Confidence             368999999999999998763  23334555666666664

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=98.95  E-value=1.2e-08  Score=81.35  Aligned_cols=122  Identities=13%  Similarity=0.170  Sum_probs=85.6

Q ss_pred             ccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh------h-cc--CCCeeE
Q 024610           96 VKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA------F-SD--SKNVHL  166 (265)
Q Consensus        96 lyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~------~-~~--~~~vqi  166 (265)
                      ..+|++.+.+++|+++++.+            ++||+.||.++         ++||.+|...      + ..  ..++++
T Consensus         4 ~~~p~~~l~~~~g~~~~l~~------------~~gk~vlv~F~---------~~~C~~C~~~~~~l~~~~~~~~~~~v~v   62 (151)
T 2f9s_A            4 SDAPNFVLEDTNGKRIELSD------------LKGKGVFLNFW---------GTWCEPCKKEFPYMANQYKHFKSQGVEI   62 (151)
T ss_dssp             EECCCCEEECTTCCEEEGGG------------GTTSEEEEEEE---------CTTCHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred             CcCCcceeEcCCCCEEEHHH------------cCCCEEEEEEE---------CCCCHHHHHHHHHHHHHHHHhccCCeEE
Confidence            45899999999999998653            35899888665         8899988631      1 11  136999


Q ss_pred             EEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCC
Q 024610          167 YEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMA  246 (265)
Q Consensus       167 v~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~a  246 (265)
                      +.|+++++.-  .  ++.+ ...  .+++.        .+ ..+....+.+.+|+..  ++.+||||++|+|++...|..
T Consensus        63 v~v~~d~~~~--~--~~~~-~~~--~~~~~--------~~-~~d~~~~~~~~~~v~~--~P~~~lid~~G~i~~~~~G~~  124 (151)
T 2f9s_A           63 VAVNVGESKI--A--VHNF-MKS--YGVNF--------PV-VLDTDRQVLDAYDVSP--LPTTFLINPEGKVVKVVTGTM  124 (151)
T ss_dssp             EEEEESCCHH--H--HHHH-HHH--HTCCS--------CE-EEETTSHHHHHTTCCS--SCEEEEECTTSEEEEEEESCC
T ss_pred             EEEECCCCHH--H--HHHH-HHH--cCCCc--------eE-EECCchHHHHhcCCCC--CCeEEEECCCCcEEEEEeCCC
Confidence            9999976431  1  2332 111  12221        12 1355677889999975  999999999999999999998


Q ss_pred             CHHHHHHHHH
Q 024610          247 TPEELSSLLS  256 (265)
Q Consensus       247 t~~E~e~L~k  256 (265)
                      ++++++.+.+
T Consensus       125 ~~~~l~~~l~  134 (151)
T 2f9s_A          125 TESMIHDYMN  134 (151)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            8877665443

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=98.95  E-value=9.2e-09  Score=84.10  Aligned_cols=131  Identities=15%  Similarity=0.123  Sum_probs=84.3

Q ss_pred             ccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh-------hccCCCeeE
Q 024610           94 AAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA-------FSDSKNVHL  166 (265)
Q Consensus        94 ~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~-------~~~~~~vqi  166 (265)
                      ....+|++.+.+.+|+++++.+            ++||+.||.+|  +      .+||.+|...       .....++++
T Consensus        18 ~G~~~P~f~l~~~~G~~v~l~~------------~~gk~vvl~F~--~------~~~c~~C~~~~~~l~~~~~~~~~v~v   77 (163)
T 1psq_A           18 VGDKALDFSLTTTDLSKKSLAD------------FDGKKKVLSVV--P------SIDTGICSTQTRRFNEELAGLDNTVV   77 (163)
T ss_dssp             TTSBCCCCEEECTTSCEEEGGG------------GTTSEEEEEEC--S------CTTSHHHHHHHHHHHHHTTTCTTEEE
T ss_pred             CCCCCCCEEEEcCCCcEeeHHH------------hCCCEEEEEEE--C------CCCCCccHHHHHHHHHHHHHcCCcEE
Confidence            3456899999999999998653            36898777444  2      5899988631       222268999


Q ss_pred             EEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcC-ChHHHHHHhcccCC----cccEEEEEeCCCcEEEc
Q 024610          167 YEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFG-DHYYFRKELKILNL----LTGYIFLLDKFGRIRWQ  241 (265)
Q Consensus       167 v~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g-~~~~iRe~Lgi~N~----~vGYVyLVD~~grIRWa  241 (265)
                      |.|++++...     ++.+ ...  .+++       ...+ ..+ ....+.+++|+...    .++.+||||++|+||+.
T Consensus        78 v~is~d~~~~-----~~~~-~~~--~~~~-------~~~~-l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~  141 (163)
T 1psq_A           78 LTVSMDLPFA-----QKRW-CGA--EGLD-------NAIM-LSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYV  141 (163)
T ss_dssp             EEEESSCHHH-----HHHH-HHH--HTCT-------TSEE-EECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEE
T ss_pred             EEEECCCHHH-----HHHH-HHh--cCCC-------CcEE-ecCCchhHHHHHhCCccccCCceEEEEEEEcCCCeEEEE
Confidence            9999875321     2332 111  1221       1122 135 45678899998742    25799999999999999


Q ss_pred             ccCCCC--HHHHHHHHHHHHh
Q 024610          242 GFGMAT--PEELSSLLSCTSL  260 (265)
Q Consensus       242 gsG~at--~~E~e~L~k~~~~  260 (265)
                      ..|...  ..+.+.+.+.++.
T Consensus       142 ~~g~~~~~~~~~~~~l~~l~~  162 (163)
T 1psq_A          142 EYVDNINSEPNFEAAIAAAKA  162 (163)
T ss_dssp             EECSBTTSCCCHHHHHHHHHH
T ss_pred             EecCCcCCCCCHHHHHHHHHh
Confidence            987522  2233445555443

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=98.95  E-value=2.4e-09  Score=87.30  Aligned_cols=133  Identities=13%  Similarity=0.151  Sum_probs=87.0

Q ss_pred             ccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhh-cchhHHh-------hccCCCee
Q 024610           94 AAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSW-SSPFFEA-------FSDSKNVH  165 (265)
Q Consensus        94 ~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw-~~p~~e~-------~~~~~~vq  165 (265)
                      .....|++.+.+++|+++++.+            ++||+.||.+|         .+| |.+|...       ....++++
T Consensus        20 ~G~~~p~f~l~~~~G~~~~l~~------------~~gk~~vl~F~---------~~~~C~~C~~~~~~l~~l~~~~~~~~   78 (167)
T 2jsy_A           20 VGDQAPDFTVLTNSLEEKSLAD------------MKGKVTIISVI---------PSIDTGVCDAQTRRFNEEAAKLGDVN   78 (167)
T ss_dssp             TTSCCCCCEEEBTTCCEEEHHH------------HTTSCEEEEEC---------SCSTTSHHHHTHHHHHHHHHHHSSCE
T ss_pred             CCCcCCceEEECCCCCEeeHHH------------hCCCeEEEEEe---------cCCCCCchHHHHHHHHHHHHHcCCCE
Confidence            3456899999999999998653            35898888665         888 9888621       11127899


Q ss_pred             EEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcC-ChHHHHHHhcccCCc----ccEEEEEeCCCcEEE
Q 024610          166 LYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFG-DHYYFRKELKILNLL----TGYIFLLDKFGRIRW  240 (265)
Q Consensus       166 iv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g-~~~~iRe~Lgi~N~~----vGYVyLVD~~grIRW  240 (265)
                      +|.|++++.-.     ++.+     .+..+.     ....++ .+ ....+.+.+|+....    ++.+||||++|+|+|
T Consensus        79 vv~is~d~~~~-----~~~~-----~~~~~~-----~~~~~~-~d~~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~i~~  142 (167)
T 2jsy_A           79 VYTISADLPFA-----QARW-----CGANGI-----DKVETL-SDHRDMSFGEAFGVYIKELRLLARSVFVLDENGKVVY  142 (167)
T ss_dssp             EEEEECSSGGG-----TSCC-----GGGSSC-----TTEEEE-EGGGTCHHHHHTTCBBTTTCSBCCEEEEECTTSCEEE
T ss_pred             EEEEECCCHHH-----HHHH-----HHhcCC-----CCceEe-eCCchhHHHHHhCCccccCCceeeEEEEEcCCCcEEE
Confidence            99999975321     1111     111111     012222 24 356788899987532    478999999999999


Q ss_pred             cccCCCC--HHHHHHHHHHHHhhhc
Q 024610          241 QGFGMAT--PEELSSLLSCTSLLLE  263 (265)
Q Consensus       241 agsG~at--~~E~e~L~k~~~~Ll~  263 (265)
                      ...|...  ..+.+.+.+.++.|++
T Consensus       143 ~~~g~~~~~~~~~~~l~~~l~~llk  167 (167)
T 2jsy_A          143 AEYVSEATNHPNYEKPIEAAKALVK  167 (167)
T ss_dssp             EEECSBTTSCCCSHHHHHHHHHHHC
T ss_pred             EEecCCcCCCCCHHHHHHHHHHhhC
Confidence            9987532  2244566666777763

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=98.95  E-value=7.3e-09  Score=85.65  Aligned_cols=135  Identities=13%  Similarity=0.103  Sum_probs=91.1

Q ss_pred             cccccccccCCCceeeCC--CCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------
Q 024610           89 IIPALAAVKFPDLDVSYS--DRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------  156 (265)
Q Consensus        89 l~ka~~AlyFPnl~~~~l--~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------  156 (265)
                      .++......+|+|.+.++  +|+++++.+            ++||++||.++         .+||.+|..          
T Consensus        28 ~~~~~~g~~~p~f~l~~~~~~g~~~~l~~------------~~gk~vlv~F~---------a~~C~~C~~~~~~l~~l~~   86 (183)
T 3lwa_A           28 FYDEADRQQLPDIGGDSLMEEGTQINLSD------------FENQVVILNAW---------GQWCAPCRSESDDLQIIHE   86 (183)
T ss_dssp             ECCGGGCCCCCCCEEEBSSSTTCEEEGGG------------GTTSEEEEEEE---------CTTCHHHHHHHHHHHHHHH
T ss_pred             ecccccCCCCCceeccccccCCcEecHHH------------hCCCEEEEEEE---------CCcCHhHHHHHHHHHHHHH
Confidence            456677889999999999  999998653            36899888666         899998872          


Q ss_pred             hhcc-----CCCeeEEEEeccc-chhhccccchHHHHHHHHh-cCCCCCccccceeEEEcCChHHHHHHhcc-cCCcccE
Q 024610          157 AFSD-----SKNVHLYEVSFID-SWLLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGDHYYFRKELKI-LNLLTGY  228 (265)
Q Consensus       157 ~~~~-----~~~vqiv~In~~e-~~lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi-~N~~vGY  228 (265)
                      .+.+     .+++++|.|++++ +.-  .  ++.+    +++ +++.        .+ ..+....+.+.++. .-..++.
T Consensus        87 ~~~~~~~~~~~~v~~v~v~~d~~~~~--~--~~~~----~~~~~~~~--------~~-~~d~~~~~~~~~~~~~v~~~P~  149 (183)
T 3lwa_A           87 ELQAAGNGDTPGGTVLGINVRDYSRD--I--AQDF----VTDNGLDY--------PS-IYDPPFMTAASLGGVPASVIPT  149 (183)
T ss_dssp             HHHHCC---CCSEEEEEEECSCCCHH--H--HHHH----HHHTTCCS--------CE-EECTTCGGGGGTTTCCTTCCSE
T ss_pred             HHHhcCCCccCCcEEEEEECCCCCHH--H--HHHH----HHHcCCCc--------cE-EECCcchHHHHhccCCCCCCCe
Confidence            2222     1344999999987 221  1  2232    222 2221        12 24566666777752 2235899


Q ss_pred             EEEEeCCCcEEEcccCCCCHHHHHHHHHHHHhhhcC
Q 024610          229 IFLLDKFGRIRWQGFGMATPEELSSLLSCTSLLLEG  264 (265)
Q Consensus       229 VyLVD~~grIRWagsG~at~~E~e~L~k~~~~Ll~e  264 (265)
                      +||||++|+|++...|..++++++.   .++.|++|
T Consensus       150 ~~lid~~G~i~~~~~g~~~~~~l~~---~l~~ll~~  182 (183)
T 3lwa_A          150 TIVLDKQHRPAAVFLREVTSKDVLD---VALPLVDE  182 (183)
T ss_dssp             EEEECTTSCEEEEECSCCCHHHHHH---HHHHHHHC
T ss_pred             EEEECCCCcEEEEEcCCCCHHHHHH---HHHHHHhc
Confidence            9999999999999999988777654   44455554

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=98.94  E-value=2.3e-08  Score=80.34  Aligned_cols=123  Identities=12%  Similarity=0.158  Sum_probs=86.0

Q ss_pred             ccccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh----------hccC
Q 024610           92 ALAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA----------FSDS  161 (265)
Q Consensus        92 a~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~----------~~~~  161 (265)
                      ...+..+|++.+.+++|+++++..            ++||+.||.++         ++||.+|...          +. .
T Consensus         8 ~~~g~~~p~~~l~~~~g~~~~l~~------------~~gk~vlv~f~---------~~~C~~C~~~~~~l~~l~~~~~-~   65 (165)
T 3or5_A            8 DARPTPAPSFSGVTVDGKPFSSAS------------LKGKAYIVNFF---------ATWCPPCRSEIPDMVQVQKTWA-S   65 (165)
T ss_dssp             CCCCCBCCCCEEECTTSCEEEGGG------------GTTCEEEEEEE---------CTTSHHHHHHHHHHHHHHHHHT-T
T ss_pred             hcCCCCCCCceeeCCCCCEechhH------------cCCCEEEEEEE---------cCcCHHHHHHHHHHHHHHHHhc-c
Confidence            345678999999999999998653            35899888666         8999988731          22 2


Q ss_pred             CCeeEEEEecccchhhccccchHHHHHHHHh-cCCCCCccccceeEEEcCChHHHHHHh------cccCCcccEEEEEeC
Q 024610          162 KNVHLYEVSFIDSWLLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGDHYYFRKEL------KILNLLTGYIFLLDK  234 (265)
Q Consensus       162 ~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~~~~iRe~L------gi~N~~vGYVyLVD~  234 (265)
                      .++++|.|+++++.-  .  ++.+    +.+ +.+.        .+ ..++ ..+.+.+      ++.  .++.+||||+
T Consensus        66 ~~v~~v~v~~d~~~~--~--~~~~----~~~~~~~~--------~~-~~~~-~~~~~~~~~~~~~~i~--~~P~~~lid~  125 (165)
T 3or5_A           66 RGFTFVGIAVNEQLP--N--VKNY----MKTQGIIY--------PV-MMAT-PELIRAFNGYIDGGIT--GIPTSFVIDA  125 (165)
T ss_dssp             TTEEEEEEECSCCHH--H--HHHH----HHHHTCCS--------CE-EECC-HHHHHHHHTTSTTCSC--SSSEEEEECT
T ss_pred             CCeEEEEEECCCCHH--H--HHHH----HHHcCCCC--------ce-EecC-HHHHHHHhhhhccCCC--CCCeEEEECC
Confidence            359999999987432  1  2222    222 2221        11 1233 4788888      565  4999999999


Q ss_pred             CCcEEEcccCCCCHHHHHHHHH
Q 024610          235 FGRIRWQGFGMATPEELSSLLS  256 (265)
Q Consensus       235 ~grIRWagsG~at~~E~e~L~k  256 (265)
                      +|+|++...|..++++++...+
T Consensus       126 ~G~i~~~~~g~~~~~~l~~~l~  147 (165)
T 3or5_A          126 SGNVSGVIVGPRSKADFDRIVK  147 (165)
T ss_dssp             TSBEEEEECSCCCHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCHHHHHHHHH
Confidence            9999999999998877665443

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=98.94  E-value=2.4e-08  Score=79.31  Aligned_cols=124  Identities=14%  Similarity=0.145  Sum_probs=87.5

Q ss_pred             cccCC-CceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH------hh-cc--CCCe
Q 024610           95 AVKFP-DLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE------AF-SD--SKNV  164 (265)
Q Consensus        95 AlyFP-nl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~-~~--~~~v  164 (265)
                      +...| ++.+.+++|+++++.+            ++||+.||.++         ++||.+|..      .+ ..  ..++
T Consensus         6 G~~~p~~f~l~~~~g~~~~l~~------------~~gk~~lv~f~---------~~~C~~C~~~~~~l~~l~~~~~~~~~   64 (152)
T 2lja_A            6 GNPSAASFSYPDINGKTVSLAD------------LKGKYIYIDVW---------ATWCGPCRGELPALKELEEKYAGKDI   64 (152)
T ss_dssp             TCCCSSSCEEEETTTEEEESTT------------TTTSEEEEEEC---------CSSCCGGGGTHHHHHHHHHHSTTSSE
T ss_pred             CCCCCcccEeecCCCCEeeHHH------------cCCCEEEEEEE---------CCcCHhHHHHhHHHHHHHHHhccCCe
Confidence            44578 9999999999998653            25899888665         889998862      11 22  2369


Q ss_pred             eEEEEecccchhhccccchHHHHHHHHh-cCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEccc
Q 024610          165 HLYEVSFIDSWLLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGF  243 (265)
Q Consensus       165 qiv~In~~e~~lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWags  243 (265)
                      ++|.|+++++.-  .  ++.+    +.+ +.+.       . .+..+....+.+.+|+.-  ++.+||+|++|+|++...
T Consensus        65 ~~v~v~~d~~~~--~--~~~~----~~~~~~~~-------~-~~~~d~~~~~~~~~~v~~--~P~~~lid~~G~i~~~~~  126 (152)
T 2lja_A           65 HFVSLSCDKNKK--A--WENM----VTKDQLKG-------I-QLHMGTDRTFMDAYLING--IPRFILLDRDGKIISANM  126 (152)
T ss_dssp             EEEEEECCSCHH--H--HHHH----HHHHTCCS-------E-EEECSSCTHHHHHTTCCS--SCCEEEECTTSCEEESSC
T ss_pred             EEEEEEccCcHH--H--HHHH----HHhcCCCC-------c-eeecCcchhHHHHcCcCC--CCEEEEECCCCeEEEccC
Confidence            999999987531  1  2332    222 2221       1 122455678999999975  999999999999999999


Q ss_pred             CCCCHHHHHHHHHH
Q 024610          244 GMATPEELSSLLSC  257 (265)
Q Consensus       244 G~at~~E~e~L~k~  257 (265)
                      |..++++++.+.+.
T Consensus       127 g~~~~~~l~~~l~~  140 (152)
T 2lja_A          127 TRPSDPKTAEKFNE  140 (152)
T ss_dssp             CCTTCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHH
Confidence            99888877665543

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=98.94  E-value=1.5e-08  Score=80.49  Aligned_cols=128  Identities=17%  Similarity=0.193  Sum_probs=86.4

Q ss_pred             ccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCC
Q 024610           94 AAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKN  163 (265)
Q Consensus        94 ~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~  163 (265)
                      .+..+|++.+.+ +|+++++.+            ++||+.||.++         ++||.+|..          .+.+ .+
T Consensus         5 ~G~~~P~f~l~~-~g~~~~l~~------------~~gk~vll~f~---------~~~C~~C~~~~~~l~~l~~~~~~-~~   61 (152)
T 3gl3_A            5 KGDKAPDFALPG-KTGVVKLSD------------KTGSVVYLDFW---------ASWCGPCRQSFPWMNQMQAKYKA-KG   61 (152)
T ss_dssp             TTSBCCCCEEEB-SSSEEEGGG------------GTTSEEEEEEE---------CTTCTHHHHHHHHHHHHHHHHGG-GT
T ss_pred             CCCcCCceEeeC-CCCeEeHHH------------hCCCEEEEEEE---------CCcCHHHHHHHHHHHHHHHHhhc-CC
Confidence            456789999999 999998653            25898888666         889998863          2222 25


Q ss_pred             eeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEccc
Q 024610          164 VHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGF  243 (265)
Q Consensus       164 vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWags  243 (265)
                      +++|.|+++++.-  .  +..+    +++ .+..      ..+ ..+....+.+.+|+..  ++.+||||++|+|++...
T Consensus        62 ~~~v~v~~d~~~~--~--~~~~----~~~-~~~~------~~~-~~d~~~~~~~~~~v~~--~P~~~lid~~G~i~~~~~  123 (152)
T 3gl3_A           62 FQVVAVNLDAKTG--D--AMKF----LAQ-VPAE------FTV-AFDPKGQTPRLYGVKG--MPTSFLIDRNGKVLLQHV  123 (152)
T ss_dssp             EEEEEEECCSSHH--H--HHHH----HHH-SCCC------SEE-EECTTCHHHHHTTCCS--SSEEEEECTTSBEEEEEE
T ss_pred             eEEEEEECCCCHH--H--HHHH----HHH-cCCC------Cce-eECCcchhHHHcCCCC--CCeEEEECCCCCEEEEEc
Confidence            9999999986421  1  2222    222 2211      112 2466678999999975  999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhhc
Q 024610          244 GMATPEELSSLLSCTSLLLE  263 (265)
Q Consensus       244 G~at~~E~e~L~k~~~~Ll~  263 (265)
                      |+.++ +.+.|.+.++.++.
T Consensus       124 g~~~~-~~~~l~~~i~~~~~  142 (152)
T 3gl3_A          124 GFRPA-DKEALEQQILAALG  142 (152)
T ss_dssp             SCCTT-THHHHHHHHHHHTC
T ss_pred             cCCCc-CHHHHHHHHHHHHc
Confidence            97544 33444444444443

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=98.94  E-value=6.9e-09  Score=81.15  Aligned_cols=124  Identities=16%  Similarity=0.225  Sum_probs=87.3

Q ss_pred             cccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh-------hccC--CC
Q 024610           93 LAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA-------FSDS--KN  163 (265)
Q Consensus        93 ~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~-------~~~~--~~  163 (265)
                      ..+..+|++.+.+++|+++++.+             +||+.||.++         ++||.+|...       ....  .+
T Consensus        10 ~~g~~~p~~~l~~~~g~~~~l~~-------------~gk~~ll~f~---------~~~C~~C~~~~~~l~~~~~~~~~~~   67 (145)
T 3erw_A           10 KQPAVPAVFLMKTIEGEDISIPN-------------KGQKTILHFW---------TSWCPPCKKELPQFQSFYDAHPSDS   67 (145)
T ss_dssp             --CCSCCEEEEECTTSCEEEESC-------------TTSEEEEEEE---------CSSCHHHHHHHHHHHHHHHHCCCSS
T ss_pred             cCCCcCCCceeecCCCCEEeHHH-------------CCCEEEEEEE---------CCCCHHHHHHHHHHHHHHHHcCCCC
Confidence            45677999999999999987642             4799888666         8999988731       1223  37


Q ss_pred             eeEEEEecccch-hhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcc
Q 024610          164 VHLYEVSFIDSW-LLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQG  242 (265)
Q Consensus       164 vqiv~In~~e~~-lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWag  242 (265)
                      +++|.|++++.- -...  ++.+    +++ .+..      ..+ ..+....+.+.+++..  ++.+||+|++|+|++..
T Consensus        68 ~~~v~v~~d~~~~~~~~--~~~~----~~~-~~~~------~~~-~~d~~~~~~~~~~v~~--~P~~~lid~~G~i~~~~  131 (145)
T 3erw_A           68 VKLVTVNLVNSEQNQQV--VEDF----IKA-NKLT------FPI-VLDSKGELMKEYHIIT--IPTSFLLNEKGEIEKTK  131 (145)
T ss_dssp             EEEEEEECGGGSSCHHH--HHHH----HHH-TTCC------SCE-EECSSSHHHHHTTCCE--ESEEEEECTTCCEEEEE
T ss_pred             EEEEEEEccCCcCCHHH--HHHH----HHH-cCCc------eeE-EEcCchhHHHhcCcCc--cCeEEEEcCCCcEEEEE
Confidence            999999997521 1111  2222    222 2211      112 2466678999999985  99999999999999999


Q ss_pred             cCCCCHHHHHHH
Q 024610          243 FGMATPEELSSL  254 (265)
Q Consensus       243 sG~at~~E~e~L  254 (265)
                      .|..++++++.+
T Consensus       132 ~g~~~~~~l~~~  143 (145)
T 3erw_A          132 IGPMTAEQLKEW  143 (145)
T ss_dssp             ESCCCHHHHHHH
T ss_pred             cCCcCHHHHHHh
Confidence            999999988754

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=98.93  E-value=3e-09  Score=85.36  Aligned_cols=127  Identities=18%  Similarity=0.115  Sum_probs=85.6

Q ss_pred             cccCCCceeeC-CCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh-h-------cc--CCC
Q 024610           95 AVKFPDLDVSY-SDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA-F-------SD--SKN  163 (265)
Q Consensus        95 AlyFPnl~~~~-l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~-~-------~~--~~~  163 (265)
                      ....|++.+.+ ++|+++++.+            ++||+.||.++         ++||.+|... .       ..  ..+
T Consensus         6 g~~~p~~~~~~~~~g~~~~l~~------------~~gk~vlv~F~---------a~~C~~C~~e~~~~l~~l~~~~~~~~   64 (160)
T 3lor_A            6 NAPLLELDVQEWVNHEGLSNED------------LRGKVVVVEVF---------QMLCPGCVNHGVPQAQKIHRMIDESQ   64 (160)
T ss_dssp             TCCBCCCCEEEESSSCCCCHHH------------HTTSEEEEEEE---------CTTCHHHHHTHHHHHHHHHHHSCTTT
T ss_pred             CCcCCCcccccccCCCccCHHH------------hCCCEEEEEEE---------cCCCcchhhhhhHHHHHHHHHhCcCC
Confidence            44678999888 8998887542            36899988666         8899998752 2       11  236


Q ss_pred             eeEEEEecc------cchhhccccchHHHHHHHHh-cCCCCCccccceeEEEcCChHH------HHHHhcccCCcccEEE
Q 024610          164 VHLYEVSFI------DSWLLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGDHYY------FRKELKILNLLTGYIF  230 (265)
Q Consensus       164 vqiv~In~~------e~~lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~~~~------iRe~Lgi~N~~vGYVy  230 (265)
                      +++|.|+++      ++.  ..  ++.+    +++ +++.      . ++  .+....      +-+.+|+.-  ++.+|
T Consensus        65 v~~v~v~~~~~~~~~~~~--~~--~~~~----~~~~~~~~------~-~~--~d~~~~~~~~~~~~~~~~v~~--~P~~~  125 (160)
T 3lor_A           65 VQVIGLHSVFEHHDVMTP--EA--LKVF----IDEFGIKF------P-VA--VDMPREGQRIPSTMKKYRLEG--TPSII  125 (160)
T ss_dssp             EEEEEEECCCSCGGGSCH--HH--HHHH----HHHTTCCS------C-EE--EECCCTTCSSCHHHHHTTCCS--SSEEE
T ss_pred             cEEEEEeccccccccCCH--HH--HHHH----HHHcCCCC------c-EE--ECCccccchhhhHHHhcccCc--cceEE
Confidence            999999984      221  11  2332    222 2221      1 11  244344      889999975  99999


Q ss_pred             EEeCCCcEEEcccCCCCHHHHHHHHHHHHhhhcC
Q 024610          231 LLDKFGRIRWQGFGMATPEELSSLLSCTSLLLEG  264 (265)
Q Consensus       231 LVD~~grIRWagsG~at~~E~e~L~k~~~~Ll~e  264 (265)
                      |||++|+|++...|..++++++   +.++.||++
T Consensus       126 lid~~G~i~~~~~g~~~~~~l~---~~i~~ll~~  156 (160)
T 3lor_A          126 LADRKGRIRQVQFGQVDDFVLG---LLLGSLLSE  156 (160)
T ss_dssp             EECTTSBEEEEEESCCCHHHHH---HHHHHHHTC
T ss_pred             EECCCCcEEEEecCcCCHHHHH---HHHHHHHhc
Confidence            9999999999999998887655   445556654

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=98.93  E-value=2.5e-08  Score=79.71  Aligned_cols=124  Identities=14%  Similarity=0.115  Sum_probs=79.5

Q ss_pred             CCCceeeC-CCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh------h-c--cCCCeeEE
Q 024610           98 FPDLDVSY-SDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA------F-S--DSKNVHLY  167 (265)
Q Consensus        98 FPnl~~~~-l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~------~-~--~~~~vqiv  167 (265)
                      +|.+.... .+|+++++.+            ++||+.||.++         ++||.+|...      + .  ...++++|
T Consensus         3 ~pa~~~~~~~~G~~~~l~~------------~~gk~vlv~F~---------a~wC~~C~~~~~~l~~l~~~~~~~~v~vv   61 (151)
T 3raz_A            3 LSADELAGWKDNTPQSLQS------------LKAPVRIVNLW---------ATWCGPCRKEMPAMSKWYKAQKKGSVDMV   61 (151)
T ss_dssp             ----CEEETTTCCEECGGG------------CCSSEEEEEEE---------CTTCHHHHHHHHHHHHHHHTSCTTTEEEE
T ss_pred             CCcchhhcccCCCEecHHH------------hCCCEEEEEEE---------cCcCHHHHHHHHHHHHHHHHhccCCeEEE
Confidence            34444333 7899987642            36899888666         8999998731      1 2  23579999


Q ss_pred             EEecccchhhccccchHHHHHHHHh-cCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCC
Q 024610          168 EVSFIDSWLLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMA  246 (265)
Q Consensus       168 ~In~~e~~lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~a  246 (265)
                      .|++++.--     ++.+    +++ +++.      ......-+....+-+.+|..-..++.+||+|++|+|++...|..
T Consensus        62 ~v~~d~~~~-----~~~~----~~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~  126 (151)
T 3raz_A           62 GIALDTSDN-----IGNF----LKQTPVSY------PIWRYTGANSRNFMKTYGNTVGVLPFTVVEAPKCGYRQTITGEV  126 (151)
T ss_dssp             EEESSCHHH-----HHHH----HHHSCCSS------CEEEECCSCHHHHHHTTTCCSCCSSEEEEEETTTTEEEECCSCC
T ss_pred             EEECCChHH-----HHHH----HHHcCCCC------ceEecCccchHHHHHHhCCccCCCCEEEEECCCCcEEEEECCCC
Confidence            999976321     2332    222 2221      11111123357788889833335899999999999999999999


Q ss_pred             CHHHHHHHHHH
Q 024610          247 TPEELSSLLSC  257 (265)
Q Consensus       247 t~~E~e~L~k~  257 (265)
                      ++++++...+-
T Consensus       127 ~~~~l~~~l~~  137 (151)
T 3raz_A          127 NEKSLTDAVKL  137 (151)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            98887665543

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=98.93  E-value=1.1e-08  Score=81.55  Aligned_cols=130  Identities=17%  Similarity=0.178  Sum_probs=86.7

Q ss_pred             ccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh-------hccC--CCe
Q 024610           94 AAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA-------FSDS--KNV  164 (265)
Q Consensus        94 ~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~-------~~~~--~~v  164 (265)
                      .+..+|++.+.+++|+++++.+            ++||+.||.++         .+||.+|...       ....  .++
T Consensus         4 ~G~~~p~~~l~~~~g~~~~l~~------------~~gk~vll~f~---------~~~C~~C~~~~~~l~~~~~~~~~~~~   62 (154)
T 3kcm_A            4 EENPAPDFTLNTLNGEVVKLSD------------LKGQVVIVNFW---------ATWCPPCREEIPSMMRLNAAMAGKPF   62 (154)
T ss_dssp             TTSBCCCCEEECTTSCEEEGGG------------GTTSEEEEEEE---------CTTCHHHHHHHHHHHHHHHHTTTSSE
T ss_pred             CCCCCCCeEEEcCCCCEEehhh------------cCCCEEEEEEE---------CCCCHHHHHHHHHHHHHHHHhccCCe
Confidence            3567899999999999998653            25899888666         8899988731       1222  369


Q ss_pred             eEEEEecccchhhccccchHHHHHHHHh-cCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEccc
Q 024610          165 HLYEVSFIDSWLLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGF  243 (265)
Q Consensus       165 qiv~In~~e~~lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWags  243 (265)
                      ++|.|+++++-...   ++.+    +++ +.+.       . + ..+....+.+.+|+.-  ++.+||||++|+|++...
T Consensus        63 ~~v~v~~d~~~~~~---~~~~----~~~~~~~~-------~-~-~~d~~~~~~~~~~v~~--~P~~~lid~~G~i~~~~~  124 (154)
T 3kcm_A           63 RMLCVSIDEGGKVA---VEEF----FRKTGFTL-------P-V-LLDADKRVGKLYGTTG--VPETFVIDRHGVILKKVV  124 (154)
T ss_dssp             EEEEEECCTTHHHH---HHHH----HHHHCCCC-------C-E-EECTTCHHHHHHTCCS--BCEEEEECTTSBEEEEEE
T ss_pred             EEEEEEcCCcchHH---HHHH----HHHcCCCe-------e-E-EecCchHHHHHhCCCC--CCeEEEECCCCcEEEEEc
Confidence            99999998752111   2232    122 2221       1 1 2466677999999985  999999999999999988


Q ss_pred             CCCCHHHHHHHHHHHHhhhc
Q 024610          244 GMATPEELSSLLSCTSLLLE  263 (265)
Q Consensus       244 G~at~~E~e~L~k~~~~Ll~  263 (265)
                      |..+.+ .+.+.+.++.|..
T Consensus       125 g~~~~~-~~~l~~~l~~l~~  143 (154)
T 3kcm_A          125 GAMEWD-HPEVIAFLNNELS  143 (154)
T ss_dssp             SCCCTT-SHHHHHHHHTC--
T ss_pred             CCCccc-cHHHHHHHHHHHH
Confidence            886432 2334444444443

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=98.92  E-value=6.3e-09  Score=83.42  Aligned_cols=127  Identities=17%  Similarity=0.148  Sum_probs=84.7

Q ss_pred             cccCCCceeeCC--CCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh-h-------ccC--C
Q 024610           95 AVKFPDLDVSYS--DRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA-F-------SDS--K  162 (265)
Q Consensus        95 AlyFPnl~~~~l--~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~-~-------~~~--~  162 (265)
                      +...|+|.+.++  +|+++++.+            ++||+.||.++         ++||.||... .       ...  .
T Consensus         3 g~~aP~f~l~~~~~~g~~~~l~~------------~~gk~vlv~f~---------a~wC~~C~~~~~~~l~~l~~~~~~~   61 (158)
T 3eyt_A            3 AMKAPELQIQQWFNSATDLTLAD------------LRGKVIVIEAF---------QMLCPGCVMHGIPLAQKVRAAFPED   61 (158)
T ss_dssp             CEECCCCCEEEEESCSSCCCTGG------------GTTSEEEEEEE---------CTTCHHHHHTHHHHHHHHHHHSCTT
T ss_pred             CCcCCCceehhhhcCCCccCHHH------------hCCCEEEEEEE---------CCcCcchhhhhhHHHHHHHHHhCcC
Confidence            345799999885  788876542            36899988666         8999999852 2       122  3


Q ss_pred             CeeEEEEecc------cchhhccccchHHHHHHHHh-cCCCCCccccceeEEEcCChH-----HHHHHhcccCCcccEEE
Q 024610          163 NVHLYEVSFI------DSWLLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGDHY-----YFRKELKILNLLTGYIF  230 (265)
Q Consensus       163 ~vqiv~In~~------e~~lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~~~-----~iRe~Lgi~N~~vGYVy  230 (265)
                      ++++|.|+++      ++.  ..  ++.+    +.+ +++.      . ++  .+...     .+-+.+|+.-  ++.+|
T Consensus        62 ~v~~v~v~~~~~~~~~~~~--~~--~~~~----~~~~~~~~------~-~~--~d~~~~~~~~~~~~~~~v~~--~P~~~  122 (158)
T 3eyt_A           62 KVAVLGLHTVFEHHEAMTP--IS--LKAF----LHEYRIKF------P-VG--VDQPGDGAMPRTMAAYQMRG--TPSLL  122 (158)
T ss_dssp             TEEEEEEECCCSCGGGSCH--HH--HHHH----HHHTTCCS------C-EE--EECCCSSSSCHHHHHTTCCS--SSEEE
T ss_pred             CEEEEEEEecccccccCCH--HH--HHHH----HHHcCCCc------e-EE--EcCccchhhHHHHHHcCCCC--CCEEE
Confidence            7999999984      221  11  2332    222 2221      1 11  22222     5889999875  99999


Q ss_pred             EEeCCCcEEEcccCCCCHHHHHHHHHHHHhhhcC
Q 024610          231 LLDKFGRIRWQGFGMATPEELSSLLSCTSLLLEG  264 (265)
Q Consensus       231 LVD~~grIRWagsG~at~~E~e~L~k~~~~Ll~e  264 (265)
                      |||++|+|++...|..++++++.   .++.|+++
T Consensus       123 lid~~G~i~~~~~g~~~~~~l~~---~i~~ll~~  153 (158)
T 3eyt_A          123 LIDKAGDLRAHHFGDVSELLLGA---EIATLLGE  153 (158)
T ss_dssp             EECTTSEEEEEEESCCCHHHHHH---HHHHHHTS
T ss_pred             EECCCCCEEEEEeCCCCHHHHHH---HHHHHhcc
Confidence            99999999999999998877554   44555554

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=98.92  E-value=8.6e-09  Score=83.11  Aligned_cols=133  Identities=11%  Similarity=0.010  Sum_probs=89.3

Q ss_pred             cccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCc-eEEEEEeeeccchHHHhhhcchhHHh------h-cc--CC
Q 024610           93 LAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPK-VSLVCLTFRASSQAMVDSWSSPFFEA------F-SD--SK  162 (265)
Q Consensus        93 ~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gK-vSIV~l~~~~~gq~~~~sw~~p~~e~------~-~~--~~  162 (265)
                      ..+...|++.+.+++|+++++.+            ++|| +.||.+| +       ++||.+|...      + ..  ..
T Consensus        10 ~~G~~~p~f~l~~~~G~~~~l~~------------~~gk~~vvl~F~-~-------a~~C~~C~~~~~~l~~~~~~~~~~   69 (160)
T 1xvw_A           10 NVGATAPDFTLRDQNQQLVTLRG------------YRGAKNVLLVFF-P-------LAFTGICQGELDQLRDHLPEFEND   69 (160)
T ss_dssp             CTTSBCCCCEEECTTSCEEEGGG------------GTTTCEEEEEEC-S-------CTTSSHHHHHHHHHHHTGGGTSSS
T ss_pred             CCCCCCCCeEeEcCCCCEEeHHH------------hcCCCCEEEEEE-C-------CCCCCchHHHHHHHHHHHHHHHHC
Confidence            34556899999999999998653            3587 8777553 2       7899998731      1 22  24


Q ss_pred             CeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCC--hHHHHHHhcccCC--ccc--EEEEEeCCC
Q 024610          163 NVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGD--HYYFRKELKILNL--LTG--YIFLLDKFG  236 (265)
Q Consensus       163 ~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~--~~~iRe~Lgi~N~--~vG--YVyLVD~~g  236 (265)
                      ++++|.|++++.-.     ++.+ ...  .+++        ..+ ..+.  ...+.+.+|+...  .++  .+||||++|
T Consensus        70 ~~~vv~is~d~~~~-----~~~~-~~~--~~~~--------~~~-~~d~~~~~~~~~~~~v~~~~~~~p~~~~~lid~~G  132 (160)
T 1xvw_A           70 DSAALAISVGPPPT-----HKIW-ATQ--SGFT--------FPL-LSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSG  132 (160)
T ss_dssp             SEEEEEEESCCHHH-----HHHH-HHH--HTCC--------SCE-EECTTTTTHHHHHTTCEETTTTEECSEEEEECTTS
T ss_pred             CcEEEEEeCCCHHH-----HHHH-HHh--cCCC--------ceE-EecCCcChHHHHHcCCccccCCCeeeeEEEECCCC
Confidence            79999999975321     2332 111  1222        112 1342  5778899998732  245  899999999


Q ss_pred             cEEEcccCCCCHH-HHHHHHHHHHhhh
Q 024610          237 RIRWQGFGMATPE-ELSSLLSCTSLLL  262 (265)
Q Consensus       237 rIRWagsG~at~~-E~e~L~k~~~~Ll  262 (265)
                      +|+|...|..+.+ +++.+.+.++.|.
T Consensus       133 ~i~~~~~g~~~~~~~~~~l~~~l~~l~  159 (160)
T 1xvw_A          133 IIRFAEMKQPGEVRDQRLWTDALAALT  159 (160)
T ss_dssp             BEEEEEECCTTCCCCHHHHHHHHHHTC
T ss_pred             eEEEEEecCCCCCCCHHHHHHHHHHhc
Confidence            9999999986543 6777877777664

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=98.92  E-value=1.3e-08  Score=78.87  Aligned_cols=121  Identities=6%  Similarity=-0.052  Sum_probs=85.2

Q ss_pred             ccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH-------hhccCCCeeEEE
Q 024610           96 VKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE-------AFSDSKNVHLYE  168 (265)
Q Consensus        96 lyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e-------~~~~~~~vqiv~  168 (265)
                      ...|++.+++++|+++++..            ++||+.||.++         ++||.+|..       .....++++++.
T Consensus         2 ~~~p~~~l~~~~g~~~~l~~------------~~~k~~lv~f~---------~~~C~~C~~~~~~l~~~~~~~~~~~~~~   60 (136)
T 1lu4_A            2 DERLQFTATTLSGAPFDGAS------------LQGKPAVLWFW---------TPWCPFCNAEAPSLSQVAAANPAVTFVG   60 (136)
T ss_dssp             GGGGCCEEEBTTSCEEEGGG------------GTTSCEEEEEE---------CTTCHHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred             CCCCCeEeecCCCCeecHHH------------hCCCEEEEEEE---------CCcChhHHHHHHHHHHHHHHCCCcEEEE
Confidence            35799999999999998653            25899888666         889998873       123334899999


Q ss_pred             EecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEccc---CC
Q 024610          169 VSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGF---GM  245 (265)
Q Consensus       169 In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWags---G~  245 (265)
                      |+++++.-  .  ++.+ ...  .+.+        ..+ ..+....+.+.+|+..  ++.+||+|++|+|+ ...   |.
T Consensus        61 v~~~~~~~--~--~~~~-~~~--~~~~--------~~~-~~d~~~~~~~~~~i~~--~P~~~lid~~G~i~-~~~~~~g~  121 (136)
T 1lu4_A           61 IATRADVG--A--MQSF-VSK--YNLN--------FTN-LNDADGVIWARYNVPW--QPAFVFYRADGTST-FVNNPTAA  121 (136)
T ss_dssp             EECSSCHH--H--HHHH-HHH--HTCC--------SEE-EECTTSHHHHHTTCCS--SSEEEEECTTSCEE-EECCSSSC
T ss_pred             EEcCCCHH--H--HHHH-HHH--cCCC--------ceE-EECCchhHHHhcCCCC--CCEEEEECCCCcEE-EEEcCCCc
Confidence            99987421  1  2332 111  1222        112 2366678889999975  99999999999999 888   88


Q ss_pred             CCHHHHHHHHH
Q 024610          246 ATPEELSSLLS  256 (265)
Q Consensus       246 at~~E~e~L~k  256 (265)
                      .++++++...+
T Consensus       122 ~~~~~l~~~l~  132 (136)
T 1lu4_A          122 MSQDELSGRVA  132 (136)
T ss_dssp             CCHHHHHHHHH
T ss_pred             cCHHHHHHHHH
Confidence            88887665443

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=98.91  E-value=1.7e-08  Score=82.13  Aligned_cols=138  Identities=9%  Similarity=-0.006  Sum_probs=83.5

Q ss_pred             ccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcc-hhH----------HhhccCC
Q 024610           94 AAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSS-PFF----------EAFSDSK  162 (265)
Q Consensus        94 ~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~-p~~----------e~~~~~~  162 (265)
                      .+...|+|.+.+++|+++++.+            ++||+.||.+|         .+||. +|.          +.+.+..
T Consensus         9 ~g~~~p~f~l~~~~G~~~~l~~------------~~gk~vll~f~---------~~~C~~~C~~~~~~l~~l~~~~~~~~   67 (174)
T 1xzo_A            9 LNYEVEPFTFQNQDGKNVSLES------------LKGEVWLADFI---------FTNCETICPPMTAHMTDLQKKLKAEN   67 (174)
T ss_dssp             CCEECCCCEEECTTSCEEETGG------------GTTCCEEEEEE---------CSCCSSCCCSHHHHHHHHHHHHHHTT
T ss_pred             cccccCCcEEEcCCCCEEehhh------------cCCCEEEEEEE---------cCCCcchhHHHHHHHHHHHHHhhhcC
Confidence            3456899999999999998653            36899888666         89998 773          2333332


Q ss_pred             -CeeEEEEecccch-hhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcc--------------cCCcc
Q 024610          163 -NVHLYEVSFIDSW-LLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKI--------------LNLLT  226 (265)
Q Consensus       163 -~vqiv~In~~e~~-lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi--------------~N~~v  226 (265)
                       ++++|.|++++.. ....  ++.+     .+..+.. |  ....+ ..+....+-+.+++              .-..+
T Consensus        68 ~~~~vv~is~d~~~d~~~~--~~~~-----~~~~~~~-~--~~~~~-l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (174)
T 1xzo_A           68 IDVRIISFSVDPENDKPKQ--LKKF-----AANYPLS-F--DNWDF-LTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQ  136 (174)
T ss_dssp             CCCEEEEEESCTTTCCHHH--HHHH-----HTTSCCC-G--GGEEE-EBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSC
T ss_pred             CcEEEEEEEeCCCCCCHHH--HHHH-----HHHcCCC-C--cceEE-EeCCCHHHHHHHHHhhcCeeEeecCCCCeeeee
Confidence             5999999997421 0011  2222     2222211 0  00022 23534444455543              11247


Q ss_pred             cEEEEEeCCCcEEEcccCCCCHHHHHHHHHHHHhhhcC
Q 024610          227 GYIFLLDKFGRIRWQGFGMATPEELSSLLSCTSLLLEG  264 (265)
Q Consensus       227 GYVyLVD~~grIRWagsG~at~~E~e~L~k~~~~Ll~e  264 (265)
                      +.+||||++|+|++...|..+ ...+.|.+.++.|+++
T Consensus       137 p~~~lid~~G~i~~~~~g~~~-~~~~~l~~~l~~ll~~  173 (174)
T 1xzo_A          137 SSFYLVGPDGKVLKDYNGVEN-TPYDDIISDVKSASTL  173 (174)
T ss_dssp             CEEEEECTTSEEEEEEESSSS-CCHHHHHHHHHHHTCC
T ss_pred             eEEEEECCCCeEEEEEcCCCC-CCHHHHHHHHHHHHhc
Confidence            789999999999999888763 1233455566667764

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=98.90  E-value=3.3e-09  Score=88.61  Aligned_cols=129  Identities=12%  Similarity=-0.014  Sum_probs=90.4

Q ss_pred             CCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCCeeEE
Q 024610           98 FPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKNVHLY  167 (265)
Q Consensus        98 FPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~vqiv  167 (265)
                      .|+|.+.+.+|+++++.+            ++||+.||.+| +       .+||.+|..          .+. ..++++|
T Consensus        31 aP~f~l~~~~G~~v~l~d------------~~Gk~vvl~f~-~-------~~~c~~C~~el~~l~~l~~~~~-~~~~~vv   89 (179)
T 3ixr_A           31 LLNHPLMLSGSTCKTLSD------------YTNQWLVLYFY-P-------KDNTPGSSTEGLEFNLLLPQFE-QINATVL   89 (179)
T ss_dssp             HHHCCEEEGGGEEECGGG------------GTTSEEEEEEC-S-------CTTSHHHHHHHHHHHHHHHHHH-TTTEEEE
T ss_pred             CCCeeEECCCCCEEeHHH------------HCCCCEEEEEE-c-------CCCCCchHHHHHHHHHHHHHHH-HCCCEEE
Confidence            899999999999987643            46897666443 2       789988862          233 3479999


Q ss_pred             EEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCc----------ccEEEEEeCCCc
Q 024610          168 EVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLL----------TGYIFLLDKFGR  237 (265)
Q Consensus       168 ~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~----------vGYVyLVD~~gr  237 (265)
                      .|+.++...     ++.+ +..  .+++        ..+ ..+....+-+++|+....          ++.+||||++|+
T Consensus        90 ~Vs~D~~~~-----~~~~-~~~--~~~~--------f~~-l~D~~~~~~~~~gv~~~~~~~g~~~~~~~p~~~lID~~G~  152 (179)
T 3ixr_A           90 GVSRDSVKS-----HDSF-CAK--QGFT--------FPL-VSDSDAILCKAFDVIKEKTMYGRQVIGIERSTFLIGPTHR  152 (179)
T ss_dssp             EEESCCHHH-----HHHH-HHH--HTCC--------SCE-EECTTCHHHHHTTCEEEECCC--CEEEECCEEEEECTTSB
T ss_pred             EEcCCCHHH-----HHHH-HHH--cCCc--------eEE-EECCchHHHHHcCCcccccccCcccCCcceEEEEECCCCE
Confidence            999875321     2332 111  1222        122 235567888999986532          567999999999


Q ss_pred             EEEcccCCCCHHHHHHHHHHHHhhhcC
Q 024610          238 IRWQGFGMATPEELSSLLSCTSLLLEG  264 (265)
Q Consensus       238 IRWagsG~at~~E~e~L~k~~~~Ll~e  264 (265)
                      ||+...|...+.+.+.+.+.++.|.++
T Consensus       153 I~~~~~~~~~~~~~~~il~~l~~l~~q  179 (179)
T 3ixr_A          153 IVEAWRQVKVPGHAEEVLNKLKAHAEQ  179 (179)
T ss_dssp             EEEEECSCCSTTHHHHHHHHHHHHHC-
T ss_pred             EEEEEcCCCCCCCHHHHHHHHHHHhcC
Confidence            999888888888889999998888753

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=98.90  E-value=3.1e-08  Score=76.00  Aligned_cols=126  Identities=13%  Similarity=0.053  Sum_probs=83.9

Q ss_pred             CCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH------hh-ccC-CCeeEEEE
Q 024610           98 FPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE------AF-SDS-KNVHLYEV  169 (265)
Q Consensus        98 FPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~-~~~-~~vqiv~I  169 (265)
                      .|++.+.+.+|+++++.+            ++||+.||.++         ++||.+|..      .+ ... .++++|.|
T Consensus         2 ~p~f~l~~~~g~~~~l~~------------~~gk~~lv~f~---------~~~C~~C~~~~~~l~~~~~~~~~~~~~v~i   60 (138)
T 4evm_A            2 VADFELMGVDGKTYRLSD------------YKGKKVYLKFW---------ASWCSICLASLPDTDEIAKEAGDDYVVLTV   60 (138)
T ss_dssp             CCCCEEEBTTSCEEEGGG------------GTTSEEEEEEC---------CTTCHHHHHHHHHHHHHHHTCTTTEEEEEE
T ss_pred             CCcceeECCCCCEEEHHH------------hCCCEEEEEEE---------cCcCHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            699999999999998653            35899888665         899998863      22 222 47899998


Q ss_pred             ecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHH
Q 024610          170 SFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPE  249 (265)
Q Consensus       170 n~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~  249 (265)
                      +....-...-   ..-+...+ +..+..     ...+ ..+....+.+.+|+..  ++.+||+|++|+|++...|..+++
T Consensus        61 ~~~~~~~~~~---~~~~~~~~-~~~~~~-----~~~~-~~d~~~~~~~~~~v~~--~P~~~lid~~G~i~~~~~g~~~~~  128 (138)
T 4evm_A           61 VSPGHKGEQS---EADFKNWY-KGLDYK-----NLPV-LVDPSGKLLETYGVRS--YPTQAFIDKEGKLVKTHPGFMEKD  128 (138)
T ss_dssp             ECTTSTTCCC---HHHHHHHH-TTCCCT-----TCCE-EECTTCHHHHHTTCCS--SSEEEEECTTCCEEEEEESCCCHH
T ss_pred             EcCCCCchhh---HHHHHHHH-hhcCCC-----CeeE-EECcchHHHHHcCccc--CCeEEEECCCCcEEEeecCCCcHH
Confidence            5432110000   11111112 222211     1222 2466678999999975  999999999999999999999998


Q ss_pred             HHHHHHH
Q 024610          250 ELSSLLS  256 (265)
Q Consensus       250 E~e~L~k  256 (265)
                      ++....+
T Consensus       129 ~l~~~l~  135 (138)
T 4evm_A          129 AILQTLK  135 (138)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8776554

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=98.90  E-value=1.2e-08  Score=82.85  Aligned_cols=121  Identities=9%  Similarity=-0.059  Sum_probs=79.8

Q ss_pred             CCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcch-hHH----------hhcc---CCCe
Q 024610           99 PDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSP-FFE----------AFSD---SKNV  164 (265)
Q Consensus        99 Pnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p-~~e----------~~~~---~~~v  164 (265)
                      |+|.+.+.+|+++++.+            ++||++||-++         .+||.| |..          .+.+   .+++
T Consensus         7 p~f~l~~~~G~~~~l~~------------~~gk~vll~F~---------~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v   65 (171)
T 2rli_A            7 GDFHLLDHRGRARCKAD------------FRGQWVLMYFG---------FTHCPDICPDELEKLVQVVRQLEAEPGLPPV   65 (171)
T ss_dssp             SCCEEEETTSCEEETTT------------TTTSEEEEEEE---------CTTCSSSHHHHHHHHHHHHHHHHHSTTSCCE
T ss_pred             CCeEEEeCCCCEEeHHH------------hCCCEEEEEEE---------cCCCCchhHHHHHHHHHHHHHHhhccCCCce
Confidence            89999999999998652            36899888555         899998 862          2332   2689


Q ss_pred             eEEEEecccch-hhccccchHHHHHHHHhcCCCCCccccceeEEEcCCh---HHHHHHhcccCC-------------ccc
Q 024610          165 HLYEVSFIDSW-LLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDH---YYFRKELKILNL-------------LTG  227 (265)
Q Consensus       165 qiv~In~~e~~-lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~---~~iRe~Lgi~N~-------------~vG  227 (265)
                      ++|-|+++... ....  ++.+    +.+ .+..      ..+ ..++.   ..+-+++|+...             .++
T Consensus        66 ~vv~is~d~~~d~~~~--~~~~----~~~-~~~~------~~~-l~~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~  131 (171)
T 2rli_A           66 QPVFITVDPERDDVEA--MARY----VQD-FHPR------LLG-LTGSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSI  131 (171)
T ss_dssp             EEEEEESCSTTCCHHH--HHHH----HHT-TCTT------CCE-EECCHHHHHHHHHHSCCCCEECCCCSSCCCCEECCC
T ss_pred             EEEEEEECCCCCCHHH--HHHH----HHH-cCCC------eEE-EeCCHHHHHHHHHHhCeEEEecCCCCCCCeEEeccc
Confidence            99999997421 1111  2332    222 2211      111 13443   357778888642             122


Q ss_pred             EEEEEeCCCcEEEcccCCCCHHHHHHH
Q 024610          228 YIFLLDKFGRIRWQGFGMATPEELSSL  254 (265)
Q Consensus       228 YVyLVD~~grIRWagsG~at~~E~e~L  254 (265)
                      .+||||++|+|++...|..+++++...
T Consensus       132 ~~~lid~~G~i~~~~~g~~~~~~l~~~  158 (171)
T 2rli_A          132 AIYLLNPDGLFTDYYGRSRSAEQISDS  158 (171)
T ss_dssp             EEEEECTTSCEEEEEESSCCHHHHHHH
T ss_pred             eEEEECCCCeEEEEECCCCCHHHHHHH
Confidence            899999999999999999888775443

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=98.90  E-value=1.3e-08  Score=80.80  Aligned_cols=118  Identities=11%  Similarity=0.134  Sum_probs=74.9

Q ss_pred             ccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh-------hccC--CCe
Q 024610           94 AAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA-------FSDS--KNV  164 (265)
Q Consensus        94 ~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~-------~~~~--~~v  164 (265)
                      .+...|++.+ +++|+++++.+            ++||++||.+|         ++||.||...       ....  .++
T Consensus         9 ~G~~~P~f~l-~~~g~~~~l~~------------~~gk~vll~F~---------a~wC~~C~~~~~~l~~l~~~~~~~~~   66 (143)
T 4fo5_A            9 PGDLAPRIEF-LGNDAKASFHN------------QLGRYTLLNFW---------AAYDAESRARNVQLANEVNKFGPDKI   66 (143)
T ss_dssp             TTSBCCCCCC------CCCSCC------------SSCCEEEEEEE---------CTTCHHHHHHHHHHHHHHTTSCTTTE
T ss_pred             CcccCCceEE-cCCCCEEEHHH------------hCCCEEEEEEE---------cCcCHHHHHHHHHHHHHHHHhCcCCE
Confidence            3557899999 89999887542            36899888665         8999998732       1222  369


Q ss_pred             eEEEEecccchhhccccchHHHHHHHHh-cCCCCCccccceeEEEcCC---hHHHHHHhcccCCcccEEEEEeCCCcEEE
Q 024610          165 HLYEVSFIDSWLLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGD---HYYFRKELKILNLLTGYIFLLDKFGRIRW  240 (265)
Q Consensus       165 qiv~In~~e~~lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~---~~~iRe~Lgi~N~~vGYVyLVD~~grIRW  240 (265)
                      ++|.|+++++.-  .  ++.+    +++ ++++      ...+  .+.   ...+.+.+|+..  ++.+||||++|+|++
T Consensus        67 ~vv~vs~d~~~~--~--~~~~----~~~~~~~~------~~~~--~d~~~~~~~~~~~~~v~~--~P~~~lid~~G~i~~  128 (143)
T 4fo5_A           67 AMCSISMDEKES--I--FTET----VKIDKLDL------STQF--HEGLGKESELYKKYDLRK--GFKNFLINDEGVIIA  128 (143)
T ss_dssp             EEEEEECCSCHH--H--HHHH----HHHHTCCG------GGEE--ECTTGGGSHHHHHTTGGG--CCCEEEECTTSBEEE
T ss_pred             EEEEEEccCCHH--H--HHHH----HHHhCCCC------ceee--ecccccchHHHHHcCCCC--CCcEEEECCCCEEEE
Confidence            999999986521  1  2222    222 2332      1111  122   356889999985  899999999999999


Q ss_pred             cccCCCCHHHHHHH
Q 024610          241 QGFGMATPEELSSL  254 (265)
Q Consensus       241 agsG~at~~E~e~L  254 (265)
                      .+-   +++|++..
T Consensus       129 ~~~---~~~~l~~~  139 (143)
T 4fo5_A          129 ANV---TPEKLTEI  139 (143)
T ss_dssp             ESC---CHHHHHHH
T ss_pred             ccC---CHHHHHHH
Confidence            875   46666544

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=98.88  E-value=1.2e-08  Score=83.56  Aligned_cols=131  Identities=13%  Similarity=0.070  Sum_probs=84.6

Q ss_pred             ccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH------hhccCCCeeEE
Q 024610           94 AAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE------AFSDSKNVHLY  167 (265)
Q Consensus        94 ~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~~~~~~vqiv  167 (265)
                      .....|+|.+.+++|+++++.+            ++||+.||.+|.        .+||.+|..      ...+..++++|
T Consensus        22 ~G~~aP~f~l~~~~G~~~~l~~------------~~Gk~vvl~f~~--------~~~c~~C~~~~~~l~~~~~~~~~~vv   81 (166)
T 3p7x_A           22 EGDFAPDFTVLDNDLNQVTLAD------------YAGKKKLISVVP--------SIDTGVCDQQTRKFNSDASKEEGIVL   81 (166)
T ss_dssp             TTSBCCCCEEECTTSCEEEGGG------------GTTSCEEEEECS--------CTTSHHHHHHHHHHHHHSCTTTSEEE
T ss_pred             CCCCCCCeEEEcCCCCEEeHHH------------hCCCcEEEEEEC--------CCCCCccHHHHHHHHHHhhcCCCEEE
Confidence            3457899999999999998653            368987775542        679988862      22222789999


Q ss_pred             EEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCC-hHHHHHHhcccCCc----ccEEEEEeCCCcEEEcc
Q 024610          168 EVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGD-HYYFRKELKILNLL----TGYIFLLDKFGRIRWQG  242 (265)
Q Consensus       168 ~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~-~~~iRe~Lgi~N~~----vGYVyLVD~~grIRWag  242 (265)
                      .|+.++..-     ++.+ ..  +.+++       ...++ .+. ...+-+++|+....    ++.+||||++|+|+|..
T Consensus        82 ~is~d~~~~-----~~~~-~~--~~~~~-------~~~~l-~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~  145 (166)
T 3p7x_A           82 TISADLPFA-----QKRW-CA--SAGLD-------NVITL-SDHRDLSFGENYGVVMEELRLLARAVFVLDADNKVVYKE  145 (166)
T ss_dssp             EEESSCHHH-----HHHH-HH--HHTCS-------SCEEE-ECTTTCHHHHHHTCEETTTTEECCEEEEECTTCBEEEEE
T ss_pred             EEECCCHHH-----HHHH-HH--HcCCC-------ceEEc-cCCchhHHHHHhCCccccCCceeeEEEEECCCCeEEEEE
Confidence            999865321     2332 11  11221       12222 355 56888999997432    78999999999999986


Q ss_pred             cCCC--CHHHHHHHHHHHHh
Q 024610          243 FGMA--TPEELSSLLSCTSL  260 (265)
Q Consensus       243 sG~a--t~~E~e~L~k~~~~  260 (265)
                      .+..  ...+.+.+.+.++.
T Consensus       146 ~~~~~~~~~~~~~il~~l~~  165 (166)
T 3p7x_A          146 IVSEGTDFPDFDAALAAYKN  165 (166)
T ss_dssp             ECSBTTSCCCHHHHHHHHHT
T ss_pred             EcCCcccCCCHHHHHHHHhc
Confidence            5542  22344555555543

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=98.88  E-value=4.7e-08  Score=77.78  Aligned_cols=131  Identities=21%  Similarity=0.239  Sum_probs=87.8

Q ss_pred             cccccCCCceeeCCCC--------CeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH------hh
Q 024610           93 LAAVKFPDLDVSYSDR--------TTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE------AF  158 (265)
Q Consensus        93 ~~AlyFPnl~~~~l~G--------~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~  158 (265)
                      ..+..+|++.+.+++|        +++++.            .+.||+.||.++         ++||.+|..      .+
T Consensus         9 ~~g~~~p~f~l~~~~g~~~~~~~~~~~~l~------------~~~gk~~ll~f~---------~~~C~~C~~~~~~l~~l   67 (156)
T 1kng_A            9 LIGRPAPQTALPPLEGLQADNVQVPGLDPA------------AFKGKVSLVNVW---------ASWCVPCHDEAPLLTEL   67 (156)
T ss_dssp             ---CBCCCCCBCCCTTCEETTEECCCBCGG------------GGTTSCEEEEEE---------CTTCHHHHHHHHHHHHH
T ss_pred             HhCCCCCCceeeeccCcccccccCceechH------------HhCCCEEEEEEE---------cccCHhHHHHHHHHHHH
Confidence            3455799999999999        665533            235899988666         899999863      33


Q ss_pred             ccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcE
Q 024610          159 SDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRI  238 (265)
Q Consensus       159 ~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grI  238 (265)
                      .+.++++++.|+++++.-  .  ++.+ +..  .+.+.      ....  .+....+.+.+|+..  ++.+||+|++|+|
T Consensus        68 ~~~~~v~~v~v~~~~~~~--~--~~~~-~~~--~~~~~------~~~~--~d~~~~~~~~~~v~~--~P~~~~id~~G~i  130 (156)
T 1kng_A           68 GKDKRFQLVGINYKDAAD--N--ARRF-LGR--YGNPF------GRVG--VDANGRASIEWGVYG--VPETFVVGREGTI  130 (156)
T ss_dssp             TTCTTSEEEEEEESCCHH--H--HHHH-HHH--HCCCC------SEEE--EETTSHHHHHTTCCS--SCEEEEECTTSBE
T ss_pred             HhcCCeEEEEEECCCCHH--H--HHHH-HHH--cCCCC------ceee--eCchhHHHHhcCcCc--cCeEEEEcCCCCE
Confidence            344679999999987531  1  2222 111  12222      1222  355677889999985  9999999999999


Q ss_pred             EEcccCCCCHHHHHHHH-HHHHhh
Q 024610          239 RWQGFGMATPEELSSLL-SCTSLL  261 (265)
Q Consensus       239 RWagsG~at~~E~e~L~-k~~~~L  261 (265)
                      ++...|..+.+++.... +.++.+
T Consensus       131 ~~~~~g~~~~~~l~~~l~~~l~~~  154 (156)
T 1kng_A          131 VYKLVGPITPDNLRSVLLPQMEKA  154 (156)
T ss_dssp             EEEEESCCCHHHHHHTHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHHHH
Confidence            99999998888765433 334433

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=98.88  E-value=2e-08  Score=80.14  Aligned_cols=124  Identities=15%  Similarity=0.117  Sum_probs=85.0

Q ss_pred             cccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh-------hccCCCee
Q 024610           93 LAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA-------FSDSKNVH  165 (265)
Q Consensus        93 ~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~-------~~~~~~vq  165 (265)
                      ..+..+|++.+.+++|+++++.+            ++ |++||.++         ++||.+|...       .... +++
T Consensus         6 ~~g~~~p~f~l~~~~g~~~~l~~------------~~-k~vll~f~---------~~~C~~C~~~~~~l~~l~~~~-~v~   62 (154)
T 3ia1_A            6 KPGEPLPDFLLLDPKGQPVTPAT------------VS-KPAVIVFW---------ASWCTVCKAEFPGLHRVAEET-GVP   62 (154)
T ss_dssp             CSBEECCCCCEECTTSCEECTTT------------SC-SSEEEEEE---------CTTCHHHHHHHHHHHHHHHHH-CCC
T ss_pred             CCCCcCCceEEECCCCCEechHH------------cC-CeEEEEEE---------cccChhHHHHHHHHHHHHHHc-CCe
Confidence            44567899999999999987542            24 78888665         8899988631       1223 899


Q ss_pred             EEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcC---ChHHHHHHhcccCCcccEEEEEeCCCcEEEcc
Q 024610          166 LYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFG---DHYYFRKELKILNLLTGYIFLLDKFGRIRWQG  242 (265)
Q Consensus       166 iv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g---~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWag  242 (265)
                      ++.|++++.--...  ++.+     .+..+.      ...+ ..+   ....+.+.+|+..  ++.+||||++|+|++..
T Consensus        63 ~v~v~~d~~~~~~~--~~~~-----~~~~~~------~~~~-~~d~~~~~~~~~~~~~v~~--~P~~~lid~~G~i~~~~  126 (154)
T 3ia1_A           63 FYVISREPRDTREV--VLEY-----MKTYPR------FIPL-LASDRDRPHEVAARFKVLG--QPWTFVVDREGKVVALF  126 (154)
T ss_dssp             EEEEECCTTCCHHH--HHHH-----HTTCTT------EEEC-BCCSSCCHHHHHTTSSBCS--SCEEEEECTTSEEEEEE
T ss_pred             EEEEeCCCcccHHH--HHHH-----HHHcCC------Cccc-ccccccchHHHHHHhCCCc--ccEEEEECCCCCEEEEE
Confidence            99999942111111  2222     222221      1112 123   5688999999985  99999999999999999


Q ss_pred             cCCCCHHHHHHHH
Q 024610          243 FGMATPEELSSLL  255 (265)
Q Consensus       243 sG~at~~E~e~L~  255 (265)
                      .|..++++++...
T Consensus       127 ~g~~~~~~l~~~l  139 (154)
T 3ia1_A          127 AGRAGREALLDAL  139 (154)
T ss_dssp             ESBCCHHHHHHHH
T ss_pred             cCCCCHHHHHHHH
Confidence            9999988766544

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=98.88  E-value=3.1e-08  Score=78.42  Aligned_cols=120  Identities=8%  Similarity=0.026  Sum_probs=80.6

Q ss_pred             cccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh---hcc---------
Q 024610           93 LAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA---FSD---------  160 (265)
Q Consensus        93 ~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~---~~~---------  160 (265)
                      ..+..+|+|.+.+++|+++++.+            ++||++||.+|         ++||.||...   +.+         
T Consensus         6 ~~G~~ap~f~l~~~~g~~~~l~~------------~~gk~vll~F~---------a~wC~~C~~~~~~l~~~~~l~~~~~   64 (142)
T 3eur_A            6 RLGTKALNFTYTLDSGVKGTLYQ------------FPAEYTLLFIN---------NPGCHACAEMIEGLKASPVINGFTA   64 (142)
T ss_dssp             CTTSBCCCCEEEETTSCEEETTT------------CCCSEEEEEEC---------CSSSHHHHHHHHHHHHCHHHHHHHH
T ss_pred             cCCCccCCcEEEcCCCCEeeHHH------------cCCCEEEEEEE---------CCCCccHHHHHHHHhhhHHHHHHhc
Confidence            34567899999999999997643            35899888655         8999998631   111         


Q ss_pred             CCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCCh--HHHHHHhcccCCcccEEEEEeCCCcE
Q 024610          161 SKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDH--YYFRKELKILNLLTGYIFLLDKFGRI  238 (265)
Q Consensus       161 ~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~--~~iRe~Lgi~N~~vGYVyLVD~~grI  238 (265)
                      ..++++|.|+++++.- .   ++.+    +.+ .+..    +.. .  ++..  ..+.+.+++..  ++.+||||++|+|
T Consensus        65 ~~~~~vi~i~~d~~~~-~---~~~~----~~~-~~~~----~~~-~--~d~~~~~~~~~~~~v~~--~P~~~lid~~G~i  126 (142)
T 3eur_A           65 AKKLKVLSIYPDEELD-E---WKKH----RND-FAKE----WTN-G--YDKELVIKNKNLYDLRA--IPTLYLLDKNKTV  126 (142)
T ss_dssp             TTSEEEEEEECSSCHH-H---HHHH----GGG-SCTT----SEE-E--ECTTCHHHHTTCSCCTT--CSEEEEECTTCBE
T ss_pred             cCCeEEEEEEcCCCHH-H---HHHH----HHh-cccc----ccc-c--cCccchhhhhhhcCCCc--CCeEEEECCCCcE
Confidence            3689999999987521 1   1222    222 2211    111 1  2333  23677888874  9999999999999


Q ss_pred             EEcccCCCCHHHHHHH
Q 024610          239 RWQGFGMATPEELSSL  254 (265)
Q Consensus       239 RWagsG~at~~E~e~L  254 (265)
                      ++.+.|   .++++.+
T Consensus       127 ~~~~~~---~~~l~~~  139 (142)
T 3eur_A          127 LLKDAT---LQKVEQY  139 (142)
T ss_dssp             EEEEEC---HHHHHHH
T ss_pred             EecCCC---HHHHHHH
Confidence            999875   5666554

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=98.87  E-value=2.3e-08  Score=80.42  Aligned_cols=127  Identities=7%  Similarity=-0.050  Sum_probs=83.7

Q ss_pred             cCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcch-hHH----------hhcc---CC
Q 024610           97 KFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSP-FFE----------AFSD---SK  162 (265)
Q Consensus        97 yFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p-~~e----------~~~~---~~  162 (265)
                      .-|++.+.+.+|+++++.+            ++||++||.++         .+||.| |..          .+.+   .+
T Consensus         2 ~ap~f~l~~~~G~~~~l~~------------~~gk~vll~f~---------~~~C~~~C~~~~~~l~~l~~~~~~~~~~~   60 (164)
T 2ggt_A            2 LGGPFSLTTHTGERKTDKD------------YLGQWLLIYFG---------FTHCPDVCPEELEKMIQVVDEIDSITTLP   60 (164)
T ss_dssp             CCCCCEEEETTSCEEEGGG------------GTTCEEEEEEE---------CTTCSSHHHHHHHHHHHHHHHHHHSSSSC
T ss_pred             CCCCeEEEeCCCCEEeHHH------------cCCCEEEEEEE---------eCCCCchhHHHHHHHHHHHHHHhhccCCC
Confidence            3589999999999998652            36899888665         899998 862          3333   25


Q ss_pred             CeeEEEEecccchh-hccccchHHHHHHHHhcCCCCCccccceeEEEcCCh---HHHHHHhcccCCccc-----------
Q 024610          163 NVHLYEVSFIDSWL-LCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDH---YYFRKELKILNLLTG-----------  227 (265)
Q Consensus       163 ~vqiv~In~~e~~l-k~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~---~~iRe~Lgi~N~~vG-----------  227 (265)
                      ++++|-|+++...- ...  ++.+    + +..+..      ..++ .++.   ..+-+++|+..  ++           
T Consensus        61 ~~~vv~vs~d~~~d~~~~--~~~~----~-~~~~~~------~~~l-~~~~d~~~~~~~~~~v~~--~p~~~~~~~~~~~  124 (164)
T 2ggt_A           61 DLTPLFISIDPERDTKEA--IANY----V-KEFSPK------LVGL-TGTREEVDQVARAYRVYY--SPGPKDEDEDYIV  124 (164)
T ss_dssp             CEEEEEEESCTTTCCHHH--HHHH----H-HTTCSS------CEEE-ECCHHHHHHHHHTTTCCE--EEEEECTTSCEEE
T ss_pred             cEEEEEEEeCCCCCCHHH--HHHH----H-HHcCCC------eEEE-eCCHHHHHHHHHhcCeEE--EecCCCCCCCeeE
Confidence            89999999975321 111  2332    2 222221      1121 2332   45777888864  44           


Q ss_pred             ----EEEEEeCCCcEEEcccCCCCHHHHHHHHHHHHhhhc
Q 024610          228 ----YIFLLDKFGRIRWQGFGMATPEELSSLLSCTSLLLE  263 (265)
Q Consensus       228 ----YVyLVD~~grIRWagsG~at~~E~e~L~k~~~~Ll~  263 (265)
                          .+||||++|+|++...|..+++++.   +.++.|++
T Consensus       125 ~~~~~~~lid~~G~i~~~~~g~~~~~~l~---~~l~~ll~  161 (164)
T 2ggt_A          125 DHTIIMYLIGPDGEFLDYFGQNKRKGEIA---ASIATHMR  161 (164)
T ss_dssp             EECCEEEEECTTSCEEEEEETTCCHHHHH---HHHHHHHG
T ss_pred             eccceEEEECCCCeEEEEeCCCCCHHHHH---HHHHHHHH
Confidence                7999999999999999988886654   44445554

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=98.87  E-value=1.4e-08  Score=84.40  Aligned_cols=133  Identities=13%  Similarity=0.051  Sum_probs=78.5

Q ss_pred             cCccccccccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH---------
Q 024610           86 NKIIIPALAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE---------  156 (265)
Q Consensus        86 p~~l~ka~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e---------  156 (265)
                      |-+..+...+..+|+|.+.+++|+++++.+            ++||+.||.+|         ++||.||..         
T Consensus         6 ~~~~~~~~~~~~~p~f~l~d~~G~~v~l~~------------~~Gk~vlv~F~---------atwC~~C~~~~p~l~~l~   64 (180)
T 3kij_A            6 HHMKFLKPKINSFYAFEVKDAKGRTVSLEK------------YKGKVSLVVNV---------ASDCQLTDRNYLGLKELH   64 (180)
T ss_dssp             ----CCCCCCCCGGGCEEEBTTSCEEEGGG------------GTTSEEEEEEE---------CSSSTTHHHHHHHHHHHH
T ss_pred             hhhhhhcCCcCcccceEEecCCCCEecHHH------------cCCCEEEEEEE---------ecCCCCcHHHHHHHHHHH
Confidence            345566777889999999999999998642            36998888555         899999873         


Q ss_pred             -hhccCCCeeEEEEeccc-----chhhccccchHHHHHHHHhcCCCCCccccceeEEEcCCh-----HHHHHHhcccCCc
Q 024610          157 -AFSDSKNVHLYEVSFID-----SWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDH-----YYFRKELKILNLL  225 (265)
Q Consensus       157 -~~~~~~~vqiv~In~~e-----~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~-----~~iRe~Lgi~N~~  225 (265)
                       .+. ..++++|.|++++     .--...  ++.+....  .+++..  .+....+  .|..     ..+....+    .
T Consensus        65 ~~~~-~~~~~vi~is~d~~~~~~~d~~~~--~~~~~~~~--~~~~~~--~~~~~d~--~~~~~~~~~~~~~~~~~----~  131 (180)
T 3kij_A           65 KEFG-PSHFSVLAFPCNQFGESEPRPSKE--VESFARKN--YGVTFP--IFHKIKI--LGSEGEPAFRFLVDSSK----K  131 (180)
T ss_dssp             HHHT-TTSEEEEEEECCCSTTCCCSCHHH--HHHHHHHH--HCCCSC--BBCCCCC--SSTTCCHHHHHHHHHHT----C
T ss_pred             HHhc-cCCeEEEEEECCccccCCCCCHHH--HHHHHHHh--cCCCCc--eeeeeec--cCccccHHHHHHHhcCC----C
Confidence             222 2369999999764     000011  23331110  122210  0000000  1221     12222222    2


Q ss_pred             ccE----EEEEeCCCcEEEcccCCCCHHHHH
Q 024610          226 TGY----IFLLDKFGRIRWQGFGMATPEELS  252 (265)
Q Consensus       226 vGY----VyLVD~~grIRWagsG~at~~E~e  252 (265)
                      ++.    +||||++|+|++...|..++++++
T Consensus       132 ~p~~~~~~~lid~~G~i~~~~~g~~~~~~l~  162 (180)
T 3kij_A          132 EPRWNFWKYLVNPEGQVVKFWRPEEPIEVIR  162 (180)
T ss_dssp             CCSSTTCEEEECTTSCEEEEECTTCCGGGTH
T ss_pred             CccccceEEEECCCCCEEEEECCCCCHHHHH
Confidence            444    899999999999999998887644

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=98.87  E-value=5.1e-09  Score=86.72  Aligned_cols=134  Identities=10%  Similarity=0.148  Sum_probs=85.1

Q ss_pred             cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCCe
Q 024610           95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKNV  164 (265)
Q Consensus        95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~v  164 (265)
                      ....|+|++.+.+|+++++.+.          ..+||+.||.+ ++       ++||.+|..          .|. ..++
T Consensus         8 G~~aPdF~l~~~~G~~v~Lsd~----------~~~Gk~vvl~f-~~-------~~~cp~C~~e~~~l~~~~~~~~-~~~v   68 (164)
T 4gqc_A            8 GEKAPDFTLPNQDFEPVNLYEV----------LKRGRPAVLIF-FP-------AAFSPVCTKELCTFRDKMAQLE-KANA   68 (164)
T ss_dssp             TSBCCCCEEEBTTSCEEEHHHH----------HHTSSCEEEEE-CS-------CTTCCEECSSCEESCCCGGGGG-GSSS
T ss_pred             CCCCcCcEeECCCCCEEEHHHH----------hcCCCEEEEEE-eC-------CCCCCCcccchhhhhhhHHHhh-ccCc
Confidence            4568999999999999986532          11588877744 33       799998863          222 2479


Q ss_pred             eEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCc--------ccEEEEEeCCC
Q 024610          165 HLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLL--------TGYIFLLDKFG  236 (265)
Q Consensus       165 qiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~--------vGYVyLVD~~g  236 (265)
                      ++|.||.++...     ++.+     .....-      ...+ ..+....+-+++|+.+..        .+.+||||++|
T Consensus        69 ~vv~is~d~~~~-----~~~~-----~~~~~~------~fp~-l~D~~~~v~~~ygv~~~~~~~~~~~~~p~tflID~~G  131 (164)
T 4gqc_A           69 EVLAISVDSPWC-----LKKF-----KDENRL------AFNL-LSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDG  131 (164)
T ss_dssp             EEEEEESSCHHH-----HHHH-----HHHTTC------CSEE-EECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTS
T ss_pred             eEEEecCCCHHH-----HHHH-----HHhcCc------ccce-eecCchHHHHHcCCcccccccCcCCeeeEEEEECCCC
Confidence            999999875322     2332     121111      1222 246667889999985422        34589999999


Q ss_pred             cEEEcccCCCCH--HHHHHHHHHHHhhhcC
Q 024610          237 RIRWQGFGMATP--EELSSLLSCTSLLLEG  264 (265)
Q Consensus       237 rIRWagsG~at~--~E~e~L~k~~~~Ll~e  264 (265)
                      +|||+.-|....  .+.+.+.+.++.|+.|
T Consensus       132 ~I~~~~~~~~~~~~~~~~eil~~l~~l~~e  161 (164)
T 4gqc_A          132 TVAYKWVTDNPLNEPDYDEVVREANKIAGE  161 (164)
T ss_dssp             BEEEEEECSCTTCCCCHHHHHHHHHHHHHH
T ss_pred             EEEEEEEeCCCCCCCCHHHHHHHHHHHhcc
Confidence            999987654322  2344555666666543

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=98.86  E-value=5.8e-08  Score=74.80  Aligned_cols=120  Identities=10%  Similarity=0.082  Sum_probs=84.3

Q ss_pred             ccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH-------hhccCCCeeEEE
Q 024610           96 VKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE-------AFSDSKNVHLYE  168 (265)
Q Consensus        96 lyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e-------~~~~~~~vqiv~  168 (265)
                      ...|++.+.+++|+++++..            +.||+.||.++         ++||.+|..       .....++++++.
T Consensus         3 ~~~p~~~~~~~~g~~~~l~~------------~~~k~~ll~f~---------~~~C~~C~~~~~~l~~~~~~~~~~~~~~   61 (136)
T 1zzo_A            3 PAQLQFSAKTLDGHDFHGES------------LLGKPAVLWFW---------APWCPTCQGEAPVVGQVAASHPEVTFVG   61 (136)
T ss_dssp             CGGGCCEEEBTTSCEEEGGG------------GTTSCEEEEEE---------CTTCHHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred             CCCCCcccccCCCCEeeHHH------------hCCCeEEEEEE---------cCCChhHHHHHHHHHHHHHHcCCeEEEE
Confidence            34799999999999998653            25898888666         889998863       123334899999


Q ss_pred             EecccchhhccccchHHHHHHHHh-cCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCC
Q 024610          169 VSFIDSWLLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMAT  247 (265)
Q Consensus       169 In~~e~~lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at  247 (265)
                      |+++++.-  .  ++.+    +++ +++.       ..+ ..+....+.+.+|+..  ++.+||+|++|+|+ ...|..+
T Consensus        62 v~~~~~~~--~--~~~~----~~~~~~~~-------~~~-~~d~~~~~~~~~~i~~--~P~~~~id~~g~i~-~~~g~~~  122 (136)
T 1zzo_A           62 VAGLDQVP--A--MQEF----VNKYPVKT-------FTQ-LADTDGSVWANFGVTQ--QPAYAFVDPHGNVD-VVRGRMS  122 (136)
T ss_dssp             EECSSCHH--H--HHHH----HHHTTCTT-------SEE-EECTTCHHHHHTTCCS--SSEEEEECTTCCEE-EEESCCC
T ss_pred             EeCCCCHH--H--HHHH----HHHcCCCc-------eEE-EEcCCcHHHHHcCCCC--CceEEEECCCCCEE-EEecCCC
Confidence            99976421  1  2222    222 2211       122 2366678889999975  99999999999999 8889888


Q ss_pred             HHHHHHHH
Q 024610          248 PEELSSLL  255 (265)
Q Consensus       248 ~~E~e~L~  255 (265)
                      .++++...
T Consensus       123 ~~~l~~~l  130 (136)
T 1zzo_A          123 QDELTRRV  130 (136)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77765444

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=98.86  E-value=1.7e-08  Score=83.46  Aligned_cols=134  Identities=20%  Similarity=0.137  Sum_probs=87.8

Q ss_pred             ccccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh------h-cc--CC
Q 024610           92 ALAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA------F-SD--SK  162 (265)
Q Consensus        92 a~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~------~-~~--~~  162 (265)
                      ......+|++.+++++|+++++.+            ++||+.||.++         .+||.+|...      + ..  ..
T Consensus        34 ~~~g~~~p~f~l~~~~G~~~~l~~------------~~gk~vll~F~---------a~~C~~C~~~~~~l~~l~~~~~~~   92 (186)
T 1jfu_A           34 ASAPLKLPDLAFEDADGKPKKLSD------------FRGKTLLVNLW---------ATWCVPCRKEMPALDELQGKLSGP   92 (186)
T ss_dssp             CCSCCBCCCCEEECTTSCEEEGGG------------GTTSEEEEEEE---------CTTCHHHHHHHHHHHHHHHHHCBT
T ss_pred             ccCCCcCCCcEeEcCCCCEeeHHH------------cCCCEEEEEEE---------eCCCHhHHHHHHHHHHHHHHhccC
Confidence            344567899999999999998653            36899888665         7999988731      1 11  24


Q ss_pred             CeeEEEEecccchhhccccchHHHHHHHHh-cCCCCCccccceeEEEcCChHHHHHHhcccC--CcccEEEEEeCCCcEE
Q 024610          163 NVHLYEVSFIDSWLLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGDHYYFRKELKILN--LLTGYIFLLDKFGRIR  239 (265)
Q Consensus       163 ~vqiv~In~~e~~lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N--~~vGYVyLVD~~grIR  239 (265)
                      ++++|.|++++.-...   ++.+    +.+ +++.       ..++ .+....+-+.+++..  ..++.+||||++|+|+
T Consensus        93 ~~~vv~v~~d~~~~~~---~~~~----~~~~~~~~-------~~~~-~d~~~~~~~~~~~~~~~~~~P~~~lid~~G~i~  157 (186)
T 1jfu_A           93 NFEVVAINIDTRDPEK---PKTF----LKEANLTR-------LGYF-NDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEI  157 (186)
T ss_dssp             TEEEEEEECCCSCTTH---HHHH----HHHTTCCT-------TCCE-ECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEE
T ss_pred             CcEEEEEECCCCCHHH---HHHH----HHHcCCCC-------CceE-ECCcchHHHHhccccccCCCCEEEEECCCCCEE
Confidence            7999999998641111   2232    111 2211       1121 355567888888852  2489999999999999


Q ss_pred             EcccCCCC--HHHHHHHHHHHHhhhcC
Q 024610          240 WQGFGMAT--PEELSSLLSCTSLLLEG  264 (265)
Q Consensus       240 WagsG~at--~~E~e~L~k~~~~Ll~e  264 (265)
                      +...|..+  .+|   +.+.++.|+++
T Consensus       158 ~~~~g~~~~~~~~---l~~~l~~ll~~  181 (186)
T 1jfu_A          158 ATIAGPAEWASED---ALKLIRAATGK  181 (186)
T ss_dssp             EEEESCCCTTSHH---HHHHHHHHHC-
T ss_pred             EEEecCCccCHHH---HHHHHHHHhcc
Confidence            99999864  344   44445556554

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=98.86  E-value=3.8e-08  Score=79.88  Aligned_cols=126  Identities=17%  Similarity=0.192  Sum_probs=88.4

Q ss_pred             cccccccCCCceeeCC--CCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH------hhccCC
Q 024610           91 PALAAVKFPDLDVSYS--DRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE------AFSDSK  162 (265)
Q Consensus        91 ka~~AlyFPnl~~~~l--~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~~~~~  162 (265)
                      +...+...|++.+.++  +|+++....           ..+||+.||-++         ++||.+|..      .+.+. 
T Consensus        21 ~~~~G~~~P~f~l~~~~~~g~~~~~~~-----------~~~gk~vll~F~---------a~~C~~C~~~~~~l~~l~~~-   79 (168)
T 2b1k_A           21 SALIGKPVPKFRLESLDNPGQFYQADV-----------LTQGKPVLLNVW---------ATWCPTCRAEHQYLNQLSAQ-   79 (168)
T ss_dssp             CTTTTSBCCCCEEEESSSTTCEEEGGG-----------GCCSSCEEEEEE---------CTTCHHHHHHHHHHHHHHHT-
T ss_pred             ccccCCcCCCeEeecccCCCcEeehhH-----------hcCCCEEEEEEE---------CCCCHHHHHHHHHHHHHHHC-
Confidence            3445667999999999  899876432           236899988666         899999873      33334 


Q ss_pred             CeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcc
Q 024610          163 NVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQG  242 (265)
Q Consensus       163 ~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWag  242 (265)
                      +++++.|+++++.-  .  ++.+ +..  .+++.      ...  ..+....+-+.+|+..  ++.+||||++|+|++..
T Consensus        80 ~v~vv~v~~~~~~~--~--~~~~-~~~--~~~~~------~~~--~~d~~~~~~~~~~v~~--~P~~~lid~~G~i~~~~  142 (168)
T 2b1k_A           80 GIRVVGMNYKDDRQ--K--AISW-LKE--LGNPY------ALS--LFDGDGMLGLDLGVYG--APETFLIDGNGIIRYRH  142 (168)
T ss_dssp             TCCEEEEEESCCHH--H--HHHH-HHH--HCCCC------SEE--EEETTCHHHHHHTCCS--SSEEEEECTTSBEEEEE
T ss_pred             CCEEEEEECCCChH--H--HHHH-HHH--cCCCC------cee--eECcchHHHHHcCccc--cCEEEEECCCCeEEEEE
Confidence            79999999877532  1  2332 111  12332      111  2355567889999985  99999999999999999


Q ss_pred             cCCCCHHHHHHH
Q 024610          243 FGMATPEELSSL  254 (265)
Q Consensus       243 sG~at~~E~e~L  254 (265)
                      .|..++++++..
T Consensus       143 ~g~~~~~~l~~~  154 (168)
T 2b1k_A          143 AGDLNPRVWEEE  154 (168)
T ss_dssp             ESCCCHHHHHHT
T ss_pred             eCCCCHHHHHHH
Confidence            999988877553

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=98.85  E-value=1.3e-08  Score=82.49  Aligned_cols=120  Identities=13%  Similarity=0.255  Sum_probs=84.1

Q ss_pred             cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh-------hccCCCeeEE
Q 024610           95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA-------FSDSKNVHLY  167 (265)
Q Consensus        95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~-------~~~~~~vqiv  167 (265)
                      ...+|++.+.+++|+++++.+            ++||++||.+|         ++||.+|...       ....+++++|
T Consensus        14 g~~~p~~~l~~~~g~~~~l~~------------~~gk~~lv~F~---------~~~C~~C~~~~~~l~~l~~~~~~v~vv   72 (165)
T 3ha9_A           14 LEREASFSLTTIDGEVISLNN------------VGGDVVILWFM---------AAWCPSCVYMADLLDRLTEKYREISVI   72 (165)
T ss_dssp             HHHHHCCCEEBTTSCEECGGG------------CCSSEEEEEEE---------CTTCTTHHHHHHHHHHHHHHCTTEEEE
T ss_pred             cCcCCCCEeecCCCCEeeHHH------------hCCCEEEEEEE---------CCCCcchhhhHHHHHHHHHHcCCcEEE
Confidence            456899999999999997653            36899999766         8999998731       2334589999


Q ss_pred             EEecc------------------cchhhccccchHHHHHHHHh-cCCCCCccccceeEEEcCChHHHHHHhcccCCcccE
Q 024610          168 EVSFI------------------DSWLLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGY  228 (265)
Q Consensus       168 ~In~~------------------e~~lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGY  228 (265)
                      .|+++                  ++.-  .  ++.+    +++ +++.       ..+ ..+ ...+.+.+++..  ++.
T Consensus        73 ~i~~d~~~~~~~~~~~~~~~~~~~~~~--~--~~~~----~~~~~~~~-------~~~-~~d-~~~~~~~~~v~~--~P~  133 (165)
T 3ha9_A           73 AIDFWTAEALKALGLNKPGYPPPDTPE--M--FRKF----IANYGDPS-------WIM-VMD-DGSLVEKFNVRS--IDY  133 (165)
T ss_dssp             EEECCSHHHHHHHTCCSTTSCCCCCHH--H--HHHH----HHHHSCTT-------SEE-EEC-CSHHHHHTTCCS--SSE
T ss_pred             EEEecccccccccccccccCCCCCCHH--H--HHHH----HHHcCCCC-------eeE-EeC-hHHHHHHhCCCC--ceE
Confidence            99997                  3211  1  2222    121 2211       222 235 678899999985  999


Q ss_pred             EEEEeCCCcEEEcccCCC-CHHHHHHHHH
Q 024610          229 IFLLDKFGRIRWQGFGMA-TPEELSSLLS  256 (265)
Q Consensus       229 VyLVD~~grIRWagsG~a-t~~E~e~L~k  256 (265)
                      +||||++|+|++  .|.. +.++++.+.+
T Consensus       134 ~~lid~~G~i~~--~g~~~~~~~l~~~l~  160 (165)
T 3ha9_A          134 IVIMDKSSNVLY--AGTTPSLGELESVIK  160 (165)
T ss_dssp             EEEEETTCCEEE--EEESCCHHHHHHHHH
T ss_pred             EEEEcCCCcEEE--eCCCCCHHHHHHHHH
Confidence            999999999999  7777 7777665543

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.85  E-value=3.3e-08  Score=78.59  Aligned_cols=122  Identities=12%  Similarity=0.050  Sum_probs=84.4

Q ss_pred             cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCCe
Q 024610           95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKNV  164 (265)
Q Consensus        95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~v  164 (265)
                      +...|++.+.+++|+++++.+            ++||+.||.++         ++||.+|..          .+.+ .++
T Consensus         5 G~~~p~~~l~~~~g~~~~l~~------------~~gk~~lv~f~---------~~~C~~C~~~~~~l~~l~~~~~~-~~~   62 (153)
T 2l5o_A            5 SKTAPAFSLPDLHGKTVSNAD------------LQGKVTLINFW---------FPSCPGCVSEMPKIIKTANDYKN-KNF   62 (153)
T ss_dssp             CTTCCSCEEECTTSCEEEHHH------------HTTCEEEEEEE---------CTTCTTHHHHHHHHHHHHHHGGG-TTE
T ss_pred             CCCCCCcEeecCCCCCccHHH------------hCCCEEEEEEE---------CCCCccHHHHHHHHHHHHHHhcc-CCe
Confidence            456899999999999988642            25899888666         789998863          1222 369


Q ss_pred             eEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccC
Q 024610          165 HLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFG  244 (265)
Q Consensus       165 qiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG  244 (265)
                      +++.|+++..-...   ++.+    +++ .+..      ..+ ..+....+.+.+|+..  ++.+||||++|+|++...|
T Consensus        63 ~vv~v~~~~~~~~~---~~~~----~~~-~~~~------~~~-~~d~~~~~~~~~~i~~--~P~~~lid~~G~i~~~~~g  125 (153)
T 2l5o_A           63 QVLAVAQPIDPIES---VRQY----VKD-YGLP------FTV-MYDADKAVGQAFGTQV--YPTSVLIGKKGEILKTYVG  125 (153)
T ss_dssp             EEEEEECTTSCHHH---HHHH----HHH-TTCC------SEE-EECSSCHHHHHHTCCS--SSEEEEECSSSCCCEEEES
T ss_pred             EEEEEecCCCCHHH---HHHH----HHH-cCCC------ceE-EcCchHHHHHHcCCCc--cCeEEEECCCCcEEEEEcC
Confidence            99999975332111   2332    222 2211      111 2455677899999975  9999999999999999999


Q ss_pred             CCCHHHHHHHH
Q 024610          245 MATPEELSSLL  255 (265)
Q Consensus       245 ~at~~E~e~L~  255 (265)
                      ..+.+++....
T Consensus       126 ~~~~~~l~~~l  136 (153)
T 2l5o_A          126 EPDFGKLYQEI  136 (153)
T ss_dssp             SCCHHHHHHHH
T ss_pred             CCCHHHHHHHH
Confidence            88887765433

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=98.84  E-value=1.5e-08  Score=87.24  Aligned_cols=131  Identities=15%  Similarity=0.099  Sum_probs=84.5

Q ss_pred             cccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCc-eEEEEEeeeccchHHHhhhcchhHH----------hhccC
Q 024610           93 LAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPK-VSLVCLTFRASSQAMVDSWSSPFFE----------AFSDS  161 (265)
Q Consensus        93 ~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gK-vSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~  161 (265)
                      ..+...|+|.+.+++|+++++.+            ++|| +.||.++         ++||.+|..          .+.+ 
T Consensus        33 ~~G~~aP~f~l~~~~G~~v~l~~------------~~gk~~vll~F~---------a~~C~~C~~~~~~l~~l~~~~~~-   90 (218)
T 3u5r_E           33 TLGTRAADFVLPDAGGNLFTLAE------------FKDSPALLVAFI---------SNRCPFVVLIREALAKFAGDYAG-   90 (218)
T ss_dssp             CTTCBCCCCCEECTTCCEECGGG------------GTTCSEEEEEEC---------CSSCHHHHTTHHHHHHHHHHHTT-
T ss_pred             CCCCcCCCcEeECCCCCEEeHHH------------hCCCCeEEEEEE---------CCCCccHHHHHHHHHHHHHHHHh-
Confidence            34567899999999999997653            3588 4777444         799998862          2222 


Q ss_pred             CCeeEEEEecccch-----hhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCC
Q 024610          162 KNVHLYEVSFIDSW-----LLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFG  236 (265)
Q Consensus       162 ~~vqiv~In~~e~~-----lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~g  236 (265)
                      .++++|.|++++..     ....  ++.+ ...  .+++        ..+ ..+....+.+.+|+..  ++.+||||++|
T Consensus        91 ~~v~vv~Vs~d~~~~~~~d~~~~--~~~~-~~~--~~~~--------~~~-l~D~~~~~~~~~~v~~--~P~~~liD~~G  154 (218)
T 3u5r_E           91 QGLAVVAINSNDAQAFPEETLER--VGAE-VKA--YGYG--------FPY-LKDASQSVAKAYGAAC--TPDFFLYDRER  154 (218)
T ss_dssp             TTEEEEEEECSCTTTCGGGSHHH--HHHH-HHH--HTCC--------SCE-EECTTCHHHHHHTCCE--ESEEEEECTTC
T ss_pred             CCcEEEEEECCcccccccCCHHH--HHHH-HHH--hCCC--------ccE-EECCccHHHHHcCCCC--CCeEEEECCCC
Confidence            35999999995210     0011  2332 111  1222        112 2466678999999985  89999999999


Q ss_pred             cEEEcccC---------CCCHHHHHHHHHHHHhhhcC
Q 024610          237 RIRWQGFG---------MATPEELSSLLSCTSLLLEG  264 (265)
Q Consensus       237 rIRWagsG---------~at~~E~e~L~k~~~~Ll~e  264 (265)
                      +|+|.|..         ..+.++   |.+.++.|+++
T Consensus       155 ~i~~~g~~d~~~~~~~~~~~~~~---l~~~i~~ll~~  188 (218)
T 3u5r_E          155 RLVYHGQFDDARPGNGKDVTGAD---LRAAVDAVLKG  188 (218)
T ss_dssp             BEEEEECSSSCCTTSCCCCCCHH---HHHHHHHHHTT
T ss_pred             cEEEeccccccccccccccCHHH---HHHHHHHHHcC
Confidence            99998642         233444   45555666653

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=98.83  E-value=5.3e-08  Score=77.93  Aligned_cols=108  Identities=18%  Similarity=0.023  Sum_probs=76.0

Q ss_pred             cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh----------hccCCCe
Q 024610           95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA----------FSDSKNV  164 (265)
Q Consensus        95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~----------~~~~~~v  164 (265)
                      +...|++.+.+++|+++++.+            ++||+.||.++         ++||.+|...          +. ..++
T Consensus         6 g~~~p~f~l~~~~G~~~~l~~------------~~gk~vll~F~---------a~~C~~C~~~~~~l~~l~~~~~-~~~~   63 (152)
T 2lrn_A            6 GSVAPAITGIDLKGNSVSLND------------FKGKYVLVDFW---------FAGCSWCRKETPYLLKTYNAFK-DKGF   63 (152)
T ss_dssp             TEECCCCEEECSSSCEEESGG------------GTTSEEEEEEE---------CTTCTTHHHHHHHHHHHHHHHT-TTTE
T ss_pred             CCcCCCceeEcCCCCEEeHHH------------cCCCEEEEEEE---------CCCChhHHHHHHHHHHHHHHhc-cCCe
Confidence            345899999999999998653            35899888665         8999998731          22 2369


Q ss_pred             eEEEEecccchhhccccchHHHHHHHHh-cCCCCCccccceeEEEcCC---hHHHHHHhcccCCcccEEEEEeCCCcEEE
Q 024610          165 HLYEVSFIDSWLLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGD---HYYFRKELKILNLLTGYIFLLDKFGRIRW  240 (265)
Q Consensus       165 qiv~In~~e~~lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~---~~~iRe~Lgi~N~~vGYVyLVD~~grIRW  240 (265)
                      +++.|+++++.- .   ++.+    +++ +.+.       ..+  .+.   ...+.+.+|+..  ++.+||||++|+|++
T Consensus        64 ~vv~v~~d~~~~-~---~~~~----~~~~~~~~-------~~~--~d~~~~~~~~~~~~~v~~--~P~~~lid~~G~i~~  124 (152)
T 2lrn_A           64 TIYGVSTDRREE-D---WKKA----IEEDKSYW-------NQV--LLQKDDVKDVLESYCIVG--FPHIILVDPEGKIVA  124 (152)
T ss_dssp             EEEEEECCSCHH-H---HHHH----HHHHTCCS-------EEE--EECHHHHHHHHHHTTCCS--SCEEEEECTTSEEEE
T ss_pred             EEEEEEccCCHH-H---HHHH----HHHhCCCC-------eEE--ecccchhHHHHHHhCCCc--CCeEEEECCCCeEEE
Confidence            999999986421 1   2232    222 2332       111  244   577889999975  999999999999999


Q ss_pred             ccc
Q 024610          241 QGF  243 (265)
Q Consensus       241 ags  243 (265)
                      ...
T Consensus       125 ~~~  127 (152)
T 2lrn_A          125 KEL  127 (152)
T ss_dssp             ECC
T ss_pred             eeC
Confidence            974

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=98.83  E-value=1.6e-08  Score=83.97  Aligned_cols=111  Identities=12%  Similarity=0.065  Sum_probs=74.9

Q ss_pred             ccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh-------hccCCC-ee
Q 024610           94 AAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA-------FSDSKN-VH  165 (265)
Q Consensus        94 ~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~-------~~~~~~-vq  165 (265)
                      .+..+|+|.+.+++|+++++.+            ++||++||.++         ++||.+|...       ....++ ++
T Consensus         9 ~g~~~p~f~l~~~~G~~~~l~~------------~~gk~vlv~F~---------a~~C~~C~~~~~~l~~l~~~~~~~~~   67 (188)
T 2cvb_A            9 LESPLIDAELPDPRGGRYRLSQ------------FHEPLLAVVFM---------CNHCPYVKGSIGELVALAERYRGKVA   67 (188)
T ss_dssp             TTCBCCCCEEECTTSCEEEGGG------------CCSSEEEEEEE---------CSSCHHHHTTHHHHHHHHHHTTTTEE
T ss_pred             CCCCCCCceeecCCCCEEeHHH------------hCCCEEEEEEE---------CCCCccHHHHHHHHHHHHHHhhcCeE
Confidence            3456899999999999998653            36899988666         8999988621       122222 99


Q ss_pred             EEEEecccch-----hhccccchHHHHHHHHh-cCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEE
Q 024610          166 LYEVSFIDSW-----LLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIR  239 (265)
Q Consensus       166 iv~In~~e~~-----lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIR  239 (265)
                      +|.|++++..     ....  ++.+    +++ +++        ..+ ..+....+.+.+|+..  ++.+||||++|+|+
T Consensus        68 ~v~v~~d~~~~~~~d~~~~--~~~~----~~~~~~~--------~~~-~~d~~~~~~~~~~v~~--~P~~~lid~~G~i~  130 (188)
T 2cvb_A           68 FVGINANDYEKYPEDAPEK--MAAF----AEEHGIF--------FPY-LLDETQEVAKAYRALR--TPEVFLFDERRLLR  130 (188)
T ss_dssp             EEEEECCCTTTCGGGSHHH--HHHH----HHHHTCC--------SCE-EECSSSHHHHHTTCCE--ESEEEEECTTCBEE
T ss_pred             EEEEEcCccccccccCHHH--HHHH----HHHhCCC--------ceE-EECCcchHHHHcCCCC--CCeEEEECCCCcEE
Confidence            9999985310     0011  2232    111 222        112 2466677889999875  89999999999999


Q ss_pred             Ecc
Q 024610          240 WQG  242 (265)
Q Consensus       240 Wag  242 (265)
                      +.|
T Consensus       131 ~~g  133 (188)
T 2cvb_A          131 YHG  133 (188)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            994

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=98.80  E-value=9.7e-09  Score=86.04  Aligned_cols=136  Identities=16%  Similarity=0.047  Sum_probs=78.5

Q ss_pred             cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCCe
Q 024610           95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKNV  164 (265)
Q Consensus        95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~v  164 (265)
                      +..+|+|.+.+++|+++++.+            ++||+.||.+|         ++||.||..          .+.+. ++
T Consensus        23 ~~~~p~f~l~d~~G~~~~l~~------------~~Gk~vlv~F~---------atwC~~C~~~~p~l~~l~~~~~~~-~~   80 (187)
T 3dwv_A           23 ASSIFDFEVLDADHKPYNLVQ------------HKGSPLLIYNV---------ASKCGYTKGGYETATTLYNKYKSQ-GF   80 (187)
T ss_dssp             CCSGGGSCCBBTTSCBCCGGG------------GTTSCEEEEEE---------CCBCSCCTTHHHHHHHHHHHHGGG-TC
T ss_pred             CCccCCeEEEcCCCCEeeHHH------------hCCCEEEEEEe---------cCCCCCcHHHHHHHHHHHHHhhhC-Ce
Confidence            356899999999999987642            46999888665         899998862          23333 69


Q ss_pred             eEEEEeccc-----chhhccccchHHHHHHHHhcCCCCCccccceeEEEcCC-h----HHHHHHh-cccC-Cccc---EE
Q 024610          165 HLYEVSFID-----SWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGD-H----YYFRKEL-KILN-LLTG---YI  229 (265)
Q Consensus       165 qiv~In~~e-----~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~-~----~~iRe~L-gi~N-~~vG---YV  229 (265)
                      ++|.|++++     ......  ++.+    +++..+..-..+....  .-+. .    ..+++.. ++.. ..++   .+
T Consensus        81 ~vi~is~d~~~~~e~~~~~~--~~~~----~~~~~~~~~p~~~~~d--~~~~~~~~~~~~l~~~~~~~~~~~~iP~~~~~  152 (187)
T 3dwv_A           81 TVLAFPSNQFGGQEPGNEEE--IKEF----VCTKFKAEFPIMAKIN--VNGENAHPLYEYMKKTKPGILATKAIKWNFTS  152 (187)
T ss_dssp             EEEEEEBCCCSSCSSSBTTH--HHHS----CCBCCCCSSCBBCCBC--CSCC-CCHHHHHHHHHSCCSBSSSSCCSTTCE
T ss_pred             EEEEEECcccCCCCCCCHHH--HHHH----HHhccCCCCceeeccc--cCCcchhHHHHHHHhhcCCccCCCccccceeE
Confidence            999999863     000011  1221    2211111100000000  0011 1    1223322 3222 2356   89


Q ss_pred             EEEeCCCcEEEcccCCCCHHHHHHHHHHHHhhhc
Q 024610          230 FLLDKFGRIRWQGFGMATPEELSSLLSCTSLLLE  263 (265)
Q Consensus       230 yLVD~~grIRWagsG~at~~E~e~L~k~~~~Ll~  263 (265)
                      ||||++|+|++...|..++++++   +.++.||+
T Consensus       153 ~liD~~G~i~~~~~g~~~~~~l~---~~i~~lL~  183 (187)
T 3dwv_A          153 FLIDRDGVPVERFSPGASVKDIE---EKLIPLLG  183 (187)
T ss_dssp             EEECTTSCEEEEECTTCCHHHHH---HHHHHHC-
T ss_pred             EEECCCCCEEEEECCCCCHHHHH---HHHHHHHh
Confidence            99999999999999998888754   44555554

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=98.79  E-value=2.5e-08  Score=82.66  Aligned_cols=126  Identities=12%  Similarity=0.074  Sum_probs=80.7

Q ss_pred             ccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhh-cchhHH-------hhccCCCee
Q 024610           94 AAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSW-SSPFFE-------AFSDSKNVH  165 (265)
Q Consensus        94 ~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw-~~p~~e-------~~~~~~~vq  165 (265)
                      .....|+|.+.+++|+++++.+            ++||+.||.+|         .+| |.+|..       .... ++++
T Consensus        20 ~G~~~P~f~l~~~~G~~v~l~~------------~~gk~vvl~F~---------~t~~C~~C~~~~~~l~~l~~~-~~v~   77 (175)
T 1xvq_A           20 VGSPAPAFTLTGGDLGVISSDQ------------FRGKSVLLNIF---------PSVDTPVCATSVRTFDERAAA-SGAT   77 (175)
T ss_dssp             TTSBCCCCEEECTTSCEEEGGG------------GTTSCEEEEEC---------SCCCSSCCCHHHHHHHHHHHH-TTCE
T ss_pred             cCCcCCCeEEECCCCCEEeHHH------------cCCCEEEEEEE---------eCCCCchHHHHHHHHHHHHhh-cCCE
Confidence            3456899999999999998653            36898888555         788 887752       2233 7899


Q ss_pred             EEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCC-------cccEEEEEeCCCcE
Q 024610          166 LYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNL-------LTGYIFLLDKFGRI  238 (265)
Q Consensus       166 iv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~-------~vGYVyLVD~~grI  238 (265)
                      +|.|++++...     ++.+     .+..+.     ....+ ..+....+-+.+|+...       ..+.+||||++|+|
T Consensus        78 vv~Is~D~~~~-----~~~~-----~~~~~~-----~~~~~-l~D~~~~~~~~~gv~~~~~~~~g~~~p~~~lid~~G~I  141 (175)
T 1xvq_A           78 VLCVSKDLPFA-----QKRF-----CGAEGT-----ENVMP-ASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNV  141 (175)
T ss_dssp             EEEEESSCHHH-----HTTC-----C-----------CEEE-EECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBE
T ss_pred             EEEEECCCHHH-----HHHH-----HHHcCC-----CCceE-eeCCHHHHHHHhCCcccccccCCcccceEEEECCCCeE
Confidence            99999965321     1111     011111     01222 23445678889998753       13789999999999


Q ss_pred             EEcccC--CCCHHHHHHHHHH
Q 024610          239 RWQGFG--MATPEELSSLLSC  257 (265)
Q Consensus       239 RWagsG--~at~~E~e~L~k~  257 (265)
                      +|...|  .....+++.+.+.
T Consensus       142 ~~~~~g~~~~~~~~~~~~l~~  162 (175)
T 1xvq_A          142 AYTELVPEIAQEPNYEAALAA  162 (175)
T ss_dssp             EEEEECSBTTCCCCHHHHHHH
T ss_pred             EEEEECCCcCCCCCHHHHHHH
Confidence            999874  3344455555443

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=98.77  E-value=3.5e-08  Score=85.39  Aligned_cols=138  Identities=13%  Similarity=0.087  Sum_probs=85.6

Q ss_pred             cccccCCCceeeCC-CC--CeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhc
Q 024610           93 LAAVKFPDLDVSYS-DR--TTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFS  159 (265)
Q Consensus        93 ~~AlyFPnl~~~~l-~G--~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~  159 (265)
                      .....+|+|.+.++ +|  +++++.+            ++||+.||.+|  +      .+||.+|..          .+.
T Consensus        41 ~~G~~aP~f~l~~~~d~~G~~v~l~~------------~~Gk~vll~F~--a------~~wC~~C~~~~p~l~~l~~~~~  100 (222)
T 3ztl_A           41 LPNRPAPEFKGQAVINGEFKEICLKD------------YRGKYVVLFFY--P------ADFTFVCPTEIIAFSDQVEEFN  100 (222)
T ss_dssp             CSSEECCCCEEEEEETTEEEEEEGGG------------GTTSEEEEEEC--S------CSSCSHHHHHHHHHHHTHHHHH
T ss_pred             cCCCCCCCeEEecccCCCCcEEeHHH------------hCCCeEEEEEE--C------CCCCCchHHHHHHHHHHHHHHH
Confidence            34557899999866 44  8887653            36898888555  1      399998873          222


Q ss_pred             cCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCC----cccEEEEEeCC
Q 024610          160 DSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNL----LTGYIFLLDKF  235 (265)
Q Consensus       160 ~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~----~vGYVyLVD~~  235 (265)
                       ..++++|-||+++..-     ...+ ....++......   ....+ ..+....+-+.+|+...    .++.+||||++
T Consensus       101 -~~~v~vv~Is~D~~~~-----~~~~-~~~~~~~~~~~~---~~~~~-l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~  169 (222)
T 3ztl_A          101 -SRNCQVIACSTDSQYS-----HLAW-DNLDRKSGGLGH---MKIPL-LADRKQEISKAYGVFDEEDGNAFRGLFIIDPN  169 (222)
T ss_dssp             -TTTEEEEEEESSCHHH-----HHHH-HHSCGGGTSCCS---CSSCE-EECSSSHHHHHTTCBCTTTSSBCEEEEEECTT
T ss_pred             -HCCCEEEEEECCCHHH-----HHHH-HHHhhhhccccc---cceeE-EeCCchHHHHHcCCeecCCCCccceEEEECCC
Confidence             2479999999975321     1222 222222111000   11222 24666789999999743    47889999999


Q ss_pred             CcEEEcccCCCCHH-HHHHHHHHHHhh
Q 024610          236 GRIRWQGFGMATPE-ELSSLLSCTSLL  261 (265)
Q Consensus       236 grIRWagsG~at~~-E~e~L~k~~~~L  261 (265)
                      |+|+|...|..+.+ .++.+.+.++.|
T Consensus       170 G~I~~~~~g~~~~~~~~~~il~~l~~l  196 (222)
T 3ztl_A          170 GILRQITINDKPVGRSVDETLRLLDAF  196 (222)
T ss_dssp             SEEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             CeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            99999988875443 345555544443

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=98.77  E-value=5.2e-08  Score=82.68  Aligned_cols=133  Identities=8%  Similarity=-0.028  Sum_probs=84.4

Q ss_pred             cCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcch-hHH----------hhcc--CCC
Q 024610           97 KFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSP-FFE----------AFSD--SKN  163 (265)
Q Consensus        97 yFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p-~~e----------~~~~--~~~  163 (265)
                      ..|+|.+.+.+|+++++.+            ++||++||.++         .+||.| |..          .+.+  ..+
T Consensus        20 ~~p~f~l~d~~G~~v~l~~------------~~Gk~vlv~F~---------at~C~~vC~~~~~~l~~l~~~~~~~~~~~   78 (200)
T 2b7k_A           20 LGGPFHLEDMYGNEFTEKN------------LLGKFSIIYFG---------FSNCPDICPDELDKLGLWLNTLSSKYGIT   78 (200)
T ss_dssp             CCCCCEEEETTSCEEEGGG------------GTTSCEEEEEE---------CTTCCSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             cCCCEEEEcCCCCEEeHHH------------cCCCEEEEEEE---------CCCCcchhHHHHHHHHHHHHHHHHhhCCc
Confidence            4599999999999998652            36899888665         899998 862          1332  358


Q ss_pred             eeEEEEecccch-hhccccchHHHHHHHHhcCCCCCccccceeEEEcCC---hHHHHHHhcccCC--------------c
Q 024610          164 VHLYEVSFIDSW-LLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGD---HYYFRKELKILNL--------------L  225 (265)
Q Consensus       164 vqiv~In~~e~~-lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~---~~~iRe~Lgi~N~--------------~  225 (265)
                      +++|-|+++... ....  ++.+    + +..+..    + ..+  .++   ...+-+.+|+...              .
T Consensus        79 v~vv~Is~D~~~d~~~~--~~~~----~-~~~~~~----~-~~l--~~~~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~  144 (200)
T 2b7k_A           79 LQPLFITCDPARDSPAV--LKEY----L-SDFHPS----I-LGL--TGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDH  144 (200)
T ss_dssp             CEEEEEESCTTTCCHHH--HHHH----H-TTSCTT----C-EEE--ECCHHHHHHHHHHTTC--------------CTTT
T ss_pred             eEEEEEECCCCCCCHHH--HHHH----H-HHcCCC----c-eEE--eCCHHHHHHHHHHcCcEEeeccccCCCCCceeee
Confidence            999999998421 0111  2222    2 222211    1 111  233   2456677887621              2


Q ss_pred             ccEEEEEeCCCcEEEcccCCCCHHH-HHHHHHHHHhhhcC
Q 024610          226 TGYIFLLDKFGRIRWQGFGMATPEE-LSSLLSCTSLLLEG  264 (265)
Q Consensus       226 vGYVyLVD~~grIRWagsG~at~~E-~e~L~k~~~~Ll~e  264 (265)
                      ++.+||||++|+|++.-.|..++++ .+.+.+.++.|+.+
T Consensus       145 ~~~~~liD~~G~i~~~~~g~~~~~~~~~~i~~~l~~l~~~  184 (200)
T 2b7k_A          145 SIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKSYVPA  184 (200)
T ss_dssp             CCCEEEECTTSCEEEEECTTCCTTHHHHHHHHHHHHCCCC
T ss_pred             cceEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHHhhhh
Confidence            3478999999999999988766655 45566667777655

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=98.77  E-value=8.8e-08  Score=75.00  Aligned_cols=131  Identities=13%  Similarity=0.084  Sum_probs=85.2

Q ss_pred             cccCCCcee--eCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH------hh-ccCC-Ce
Q 024610           95 AVKFPDLDV--SYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE------AF-SDSK-NV  164 (265)
Q Consensus        95 AlyFPnl~~--~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~-~~~~-~v  164 (265)
                      +...|++.+  ++++|+++++..            ++||+.||.++         ++||.+|..      .+ ...+ .+
T Consensus         4 g~~~P~f~~~~~~~~g~~~~~~~------------~~gk~~lv~f~---------~~~C~~C~~~~~~l~~l~~~~~~~~   62 (148)
T 2b5x_A            4 RQPMPELTGEKAWLNGEVTREQL------------IGEKPTLIHFW---------SISCHLCKEAMPQVNEFRDKYQDQL   62 (148)
T ss_dssp             TCBCCCCCCCSEEESCCCCHHHH------------TTTSCEEEEEE---------CTTCHHHHHHHHHHHHHHHHHTTTS
T ss_pred             CCCCCCCccccccccCcccchhh------------cCCCEEEEEEE---------cCCCHHHHHHhHHHHHHHHHhcCCc
Confidence            345799987  678999886542            35899988666         889998863      11 1122 29


Q ss_pred             eEEEEecccchhh-ccccchHHHHHHHHh-cCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcc
Q 024610          165 HLYEVSFIDSWLL-CRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQG  242 (265)
Q Consensus       165 qiv~In~~e~~lk-~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWag  242 (265)
                      +++.|++++.--. ...-++.+    +.+ +++.      .  + ..+....+.+.+|+.-  ++.+||+|++|+|++..
T Consensus        63 ~~~~v~~~~~~~~~~~~~~~~~----~~~~~~~~------~--~-~~d~~~~~~~~~~v~~--~P~~~lid~~G~i~~~~  127 (148)
T 2b5x_A           63 NVVAVHMPRSEDDLDPGKIKET----AAEHDITQ------P--I-FVDSDHALTDAFENEY--VPAYYVFDKTGQLRHFQ  127 (148)
T ss_dssp             EEEEEECCCSTTTSSHHHHHHH----HHHTTCCS------C--E-EECSSCHHHHHTCCCC--SSEEEEECTTCBEEEEE
T ss_pred             EEEEEEcCCCccccCHHHHHHH----HHHcCCCc------c--e-EECCchhHHHHhCCCC--CCEEEEECCCCcEEEEe
Confidence            9999998752110 00002222    222 2221      1  2 2466678899999975  99999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHhhhcC
Q 024610          243 FGMATPEELSSLLSCTSLLLEG  264 (265)
Q Consensus       243 sG~at~~E~e~L~k~~~~Ll~e  264 (265)
                      .|..++++++.   .++.|+++
T Consensus       128 ~g~~~~~~l~~---~l~~~l~~  146 (148)
T 2b5x_A          128 AGGSGMKMLEK---RVNRVLAE  146 (148)
T ss_dssp             ESCSTTHHHHH---HHHHHHTT
T ss_pred             cCCCCHHHHHH---HHHHHHhc
Confidence            99887776554   34455543

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=98.24  E-value=8.6e-10  Score=88.98  Aligned_cols=131  Identities=16%  Similarity=0.170  Sum_probs=86.7

Q ss_pred             cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh---hcc--------CCC
Q 024610           95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA---FSD--------SKN  163 (265)
Q Consensus        95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~---~~~--------~~~  163 (265)
                      +...|++.+.+++|+++++.+            ++||+.||.++         ++||.+|...   +.+        ..+
T Consensus        10 g~~~p~f~l~~~~g~~~~l~~------------~~gk~vll~f~---------a~~C~~C~~~~~~l~~~l~~~~~~~~~   68 (159)
T 2ls5_A           10 GEMAPDFTITLTDGKQVTLSS------------LRGKVVMLQFT---------ASWCGVCRKEMPFIEKDIWLKHKDNAD   68 (159)
Confidence            446799999999999987642            35898888555         8899998631   222        357


Q ss_pred             eeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEccc
Q 024610          164 VHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGF  243 (265)
Q Consensus       164 vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWags  243 (265)
                      +++|.|+++++.-  .  ++.+     .+..+.      ...+ ..+....+.+.+|+.-.-++.+||||++|+|++...
T Consensus        69 ~~vv~v~~d~~~~--~--~~~~-----~~~~~~------~~~~-~~d~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~~~  132 (159)
T 2ls5_A           69 FALIGIDRDEPLE--K--VLAF-----AKSTGV------TYPL-GLDPGADIFAKYALRDAGITRNVLIDREGKIVKLTR  132 (159)
Confidence            9999999876421  1  1222     111111      1111 235556788888865445889999999999999998


Q ss_pred             CCCCHHHHHHHHHHHHhhhc
Q 024610          244 GMATPEELSSLLSCTSLLLE  263 (265)
Q Consensus       244 G~at~~E~e~L~k~~~~Ll~  263 (265)
                      |. ++++++.+.+.+..+..
T Consensus       133 g~-~~~~l~~~l~~l~~~~~  151 (159)
T 2ls5_A          133 LY-NEEEFASLVQQINEMLK  151 (159)
Confidence            85 56677766666555543

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=98.75  E-value=9.2e-08  Score=79.07  Aligned_cols=128  Identities=14%  Similarity=0.081  Sum_probs=77.7

Q ss_pred             cccCC-CceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcc-hhH----------Hhhcc-C
Q 024610           95 AVKFP-DLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSS-PFF----------EAFSD-S  161 (265)
Q Consensus        95 AlyFP-nl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~-p~~----------e~~~~-~  161 (265)
                      +..+| +|.+.+.+|+++++.+            ++||+.||.++         .+||. +|.          +.+.. .
T Consensus         4 G~~~P~~f~l~d~~G~~v~l~~------------~~Gk~vll~F~---------~t~C~~~C~~~~~~l~~~~~~~~~~~   62 (170)
T 3me7_A            4 GTYVPGDITLVDSYGNEFQLKN------------LKGKPIILSPI---------YTHCRAACPLITKSLLKVIPKLGTPG   62 (170)
T ss_dssp             TCBCCTTCEEEETTCCEEEGGG------------GTTSCEEEEEE---------CTTCCSHHHHHHHHHHTTHHHHCCBT
T ss_pred             CCcCCCCeEEEcCCcCEEchHH------------hCCCEEEEEEE---------CCCCCchhHHHHHHHHHHHHHhhhcC
Confidence            45689 9999999999998653            36899888666         88996 465          23322 3


Q ss_pred             CCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCCh---HHHHHHhccc-------CCcccEEEE
Q 024610          162 KNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDH---YYFRKELKIL-------NLLTGYIFL  231 (265)
Q Consensus       162 ~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~---~~iRe~Lgi~-------N~~vGYVyL  231 (265)
                      .++++|-|+++..-....  ++.+ ....  +.+..   .|.. + ..++.   ..+-+++|+.       -..++.+||
T Consensus        63 ~~~~vv~is~d~~d~~~~--~~~~-~~~~--~~~~~---~w~~-l-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l  132 (170)
T 3me7_A           63 KDFWVITFTFDPKDTLED--IKRF-QKEY--GIDGK---GWKV-V-KAKTSEDLFKLLDAIDFRFMTAGNDFIHPNVVVV  132 (170)
T ss_dssp             TTBEEEEEECCTTCCHHH--HHHH-HHHT--TCCSS---SEEE-E-EESSHHHHHHHHHHTTCCCEEETTEEECCCEEEE
T ss_pred             CceEEEEEECCCCCCHHH--HHHH-HHHc--CCCCC---CeEE-E-eCCCHHHHHHHHHHCCeEEecCCCccccCceEEE
Confidence            579999999973101111  2332 1111  12111   0211 1 12443   4455555543       234678999


Q ss_pred             EeCCCcEEEcccCC-CCHHHHHH
Q 024610          232 LDKFGRIRWQGFGM-ATPEELSS  253 (265)
Q Consensus       232 VD~~grIRWagsG~-at~~E~e~  253 (265)
                      ||++|+||+.-.|. .+++|+..
T Consensus       133 ID~~G~i~~~~~g~~~~~~~i~~  155 (170)
T 3me7_A          133 LSPELQIKDYIYGVNYNYLEFVN  155 (170)
T ss_dssp             ECTTSBEEEEEESSSCCHHHHHH
T ss_pred             ECCCCeEEEEEeCCCCCHHHHHH
Confidence            99999999888886 44555443

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=98.74  E-value=2.5e-08  Score=81.78  Aligned_cols=125  Identities=8%  Similarity=-0.033  Sum_probs=79.7

Q ss_pred             cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH-------hhccCCCeeEE
Q 024610           95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE-------AFSDSKNVHLY  167 (265)
Q Consensus        95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e-------~~~~~~~vqiv  167 (265)
                      ...+|++.+.+.+|+++++.+            ++||+.||.+|.        .+||.+|..       ......++++|
T Consensus        20 G~~~P~f~l~~~~G~~v~l~~------------~~gk~vvl~f~~--------~~~c~~C~~e~~~l~~~~~~~~~v~vv   79 (165)
T 1q98_A           20 GEIVENFILVGNDLADVALND------------FASKRKVLNIFP--------SIDTGVCATSVRKFNQQAAKLSNTIVL   79 (165)
T ss_dssp             TCBCCCCEEECTTSCEEEGGG------------GTTSEEEEEECS--------CSCSSCCCHHHHHHHHHHHHSTTEEEE
T ss_pred             CCCCCCeEEECCCCCEEehHH------------hCCCeEEEEEEC--------CCCCCccHHHHHHHHHHHHHcCCCEEE
Confidence            446899999999999998653            368987775541        689887752       12222689999


Q ss_pred             EEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCC-hHHHHHHhcccCC-------cccEEEEEeCCCcEE
Q 024610          168 EVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGD-HYYFRKELKILNL-------LTGYIFLLDKFGRIR  239 (265)
Q Consensus       168 ~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~-~~~iRe~Lgi~N~-------~vGYVyLVD~~grIR  239 (265)
                      -|++++...     ++.+     .+..+     +....+ ..+. ...+-+++|+...       .++.+||||++|+||
T Consensus        80 ~Is~d~~~~-----~~~~-----~~~~~-----~~~~~~-l~D~~~~~~~~~~gv~~~~~~~~g~~~p~~~liD~~G~i~  143 (165)
T 1q98_A           80 CISADLPFA-----QARF-----CGAEG-----IENAKT-VSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVL  143 (165)
T ss_dssp             EEESSCHHH-----HTTC-----TTTTT-----CTTEEE-EECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEE
T ss_pred             EEeCCCHHH-----HHHH-----HHHcC-----CCceEE-eeccccchHHHHhCceecccccCCccceeEEEEcCCCEEE
Confidence            999865321     1111     11111     101222 2354 5778899998642       368999999999999


Q ss_pred             EcccCC--CCHHHHHHHH
Q 024610          240 WQGFGM--ATPEELSSLL  255 (265)
Q Consensus       240 WagsG~--at~~E~e~L~  255 (265)
                      +...|+  ....+.+.+.
T Consensus       144 ~~~~~~~~~~~~~~~~~l  161 (165)
T 1q98_A          144 HSQLVEEIKEEPNYEAAL  161 (165)
T ss_dssp             EEEECSBTTSCCCHHHHH
T ss_pred             EEEeCCCCCCCCCHHHHH
Confidence            999763  3333444443

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=98.73  E-value=4e-08  Score=83.95  Aligned_cols=116  Identities=11%  Similarity=0.021  Sum_probs=77.4

Q ss_pred             ccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH-------hhccCCCeeE
Q 024610           94 AAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE-------AFSDSKNVHL  166 (265)
Q Consensus        94 ~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e-------~~~~~~~vqi  166 (265)
                      .+...|+|.+.+.+|+++++.+            ++||+.||.+|  .      .+||.+|..       ...+..++++
T Consensus        54 ~G~~aPdf~l~d~~G~~v~L~d------------~~Gk~vvl~F~--~------~~~c~~C~~e~~~l~~l~~~~~~v~v  113 (200)
T 3zrd_A           54 IGDKAKDFTLVAKDLSDVALSS------------FAGKRKVLNIF--P------SIDTGVCAASVRKFNQLAGELENTVV  113 (200)
T ss_dssp             TTCBCCCCEEECTTSCEEEGGG------------GTTSEEEEEEC--S------CCCCSCCCHHHHHHHHHHHTSTTEEE
T ss_pred             CCCCCCCeEEECCCCCEEcHHH------------hCCCcEEEEEE--C------CCCCchhHHHHHHHHHHHHHhCCCEE
Confidence            4557899999999999998653            36898777554  1      578887752       2233368999


Q ss_pred             EEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCC-hHHHHHHhcccCC-------cccEEEEEeCCCcE
Q 024610          167 YEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGD-HYYFRKELKILNL-------LTGYIFLLDKFGRI  238 (265)
Q Consensus       167 v~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~-~~~iRe~Lgi~N~-------~vGYVyLVD~~grI  238 (265)
                      |.|+.++...     ++.+     .+..+     +....+ ..+. ...+-+++|+...       .++.+||||++|+|
T Consensus       114 v~Is~D~~~~-----~~~~-----~~~~~-----~~~f~~-l~D~~~~~~~~~ygv~~~~~~~~g~~~p~~~lID~~G~I  177 (200)
T 3zrd_A          114 LCISSDLPFA-----QSRF-----CGAEG-----LSNVIT-LSTLRGADFKQAYGVAITEGPLAGLTARAVVVLDGQDNV  177 (200)
T ss_dssp             EEEESSCHHH-----HTTC-----TTTTT-----CTTEEE-EETTSCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBE
T ss_pred             EEEECCCHHH-----HHHH-----HHHcC-----CCCceE-EecCchHHHHHHhCceeecccCCCccccEEEEECCCCeE
Confidence            9999875321     1111     11111     101222 2355 5789999999743       36899999999999


Q ss_pred             EEcccCC
Q 024610          239 RWQGFGM  245 (265)
Q Consensus       239 RWagsG~  245 (265)
                      +|+.-|.
T Consensus       178 ~~~~~~~  184 (200)
T 3zrd_A          178 IYSELVN  184 (200)
T ss_dssp             EEEEECS
T ss_pred             EEEEecC
Confidence            9998665

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=98.72  E-value=9.1e-08  Score=77.47  Aligned_cols=120  Identities=13%  Similarity=0.020  Sum_probs=78.1

Q ss_pred             cCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcch-hHH------h-hccCC-----C
Q 024610           97 KFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSP-FFE------A-FSDSK-----N  163 (265)
Q Consensus        97 yFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p-~~e------~-~~~~~-----~  163 (265)
                      ..|++.+.+++| ++++.+            ++||+.||.++         .+||.| |..      . ....+     +
T Consensus        15 ~~p~f~l~~~~g-~~~l~~------------~~gk~vll~f~---------~~~C~~~C~~~~~~l~~~~~~~~~~~~~~   72 (172)
T 2k6v_A           15 KPVDFALEGPQG-PVRLSQ------------FQDKVVLLFFG---------FTRCPDVCPTTLLALKRAYEKLPPKAQER   72 (172)
T ss_dssp             EECCCEEECSSS-EEEGGG------------STTSEEEEEEE---------CTTCSSHHHHHHHHHHHHHTTSCHHHHTT
T ss_pred             CCCCeEEEcCCC-CCcHHH------------hCCCEEEEEEE---------CCCCcchhHHHHHHHHHHHHHhhhhccCC
Confidence            379999999999 987652            36899888655         899998 863      1 22222     7


Q ss_pred             eeEEEEecccch-hhccccchHHHHHHHHhcCCCCCccccceeEEEcCCh---HHHHHHhcccC-------------Ccc
Q 024610          164 VHLYEVSFIDSW-LLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDH---YYFRKELKILN-------------LLT  226 (265)
Q Consensus       164 vqiv~In~~e~~-lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~---~~iRe~Lgi~N-------------~~v  226 (265)
                      +++|-|++++.. ....  ++.+    +++ .+.      ...+ ..++.   ..+-+++|+..             ..+
T Consensus        73 v~vv~is~d~~~d~~~~--~~~~----~~~-~~~------~~~~-l~d~~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~  138 (172)
T 2k6v_A           73 VQVIFVSVDPERDPPEV--ADRY----AKA-FHP------SFLG-LSGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHT  138 (172)
T ss_dssp             EEEEEEESCTTTCCHHH--HHHH----HHH-HCT------TEEE-ECCCHHHHHHHHHHHTCCEEEEEEEETTEEEEEEC
T ss_pred             EEEEEEEECCCCCCHHH--HHHH----HHH-hCC------CcEE-EeCCHHHHHHHHHhcCeEEEeccCCCCCCceEecC
Confidence            999999997532 1111  2222    122 111      1222 23554   46777888642             247


Q ss_pred             cEEEEEeCCCcEEEcccCCC--CHHHHHH
Q 024610          227 GYIFLLDKFGRIRWQGFGMA--TPEELSS  253 (265)
Q Consensus       227 GYVyLVD~~grIRWagsG~a--t~~E~e~  253 (265)
                      +.+|||| +|+|++...|..  +++++..
T Consensus       139 P~~~lid-~G~i~~~~~g~~~~~~~~l~~  166 (172)
T 2k6v_A          139 ATTFVVK-EGRLVLLYSPDKAEATDRVVA  166 (172)
T ss_dssp             CCEEEEE-TTEEEEEECHHHHTCHHHHHH
T ss_pred             CEEEEEE-CCEEEEEECCCCCCCHHHHHH
Confidence            8999999 999999999887  6655543

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=98.71  E-value=6.4e-08  Score=78.22  Aligned_cols=133  Identities=14%  Similarity=0.112  Sum_probs=79.2

Q ss_pred             ccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCC
Q 024610           94 AAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKN  163 (265)
Q Consensus        94 ~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~  163 (265)
                      .+..+|++.+.+++|+++++.+            ++||+.||.++         ++||.+|..          .+.+ .+
T Consensus         8 ~g~~~p~f~l~~~~g~~~~l~~------------~~gk~vll~f~---------a~~C~~C~~~~~~l~~l~~~~~~-~~   65 (170)
T 2p5q_A            8 NPESVHDFTVKDAKENDVDLSI------------FKGKVLLIVNV---------ASKCGMTNSNYAEMNQLYEKYKD-QG   65 (170)
T ss_dssp             --CCGGGCEEEBTTSCEEEGGG------------GTTSEEEEEEE---------CSSSTTHHHHHHHHHHHHHHHGG-GT
T ss_pred             CCccccceEEEcCCCCEecHHH------------hCCCEEEEEEE---------eccCCccHHHHHHHHHHHHHhcc-CC
Confidence            3456899999999999998653            36899888665         899999863          2222 36


Q ss_pred             eeEEEEeccc-----chhhccccchHHHHHHHH-h-cCCCCCccccceeEEEcCCh----HHHH-----HHhcccCCccc
Q 024610          164 VHLYEVSFID-----SWLLCRSPIKRILLKIMR-K-SKDAGENVLQRQIVYSFGDH----YYFR-----KELKILNLLTG  227 (265)
Q Consensus       164 vqiv~In~~e-----~~lk~~~~lk~~~~~~lr-k-~~p~~~~~l~~~~~y~~g~~----~~iR-----e~Lgi~N~~vG  227 (265)
                      +++|.|++++     .-....  ++.+    ++ + +++..  .+.     ..+..    ..+-     +..|+....++
T Consensus        66 ~~vv~vs~d~~~~~~~~~~~~--~~~~----~~~~~~~~~~--~~~-----~~d~~~~~~~~~~~~l~~~~~~~~~~~~p  132 (170)
T 2p5q_A           66 LEILAFPCNQFGEEEPGTNDQ--ITDF----VCTRFKSEFP--IFD-----KIDVNGENASPLYRFLKLGKWGIFGDDIQ  132 (170)
T ss_dssp             EEEEEEECCTTTTCCCSCHHH--HHHH----HHHHTCCCSC--BBC-----CCBSSSTTBCHHHHHHHTHHHHTTCSCCC
T ss_pred             EEEEEEECCCCCCCCCCCHHH--HHHH----HHHhcCCCce--eEe-----eeccCCCchHHHHHHHHhcCCCccCCccc
Confidence            9999999863     000011  2332    22 1 22210  010     00111    1111     12355222356


Q ss_pred             ---EEEEEeCCCcEEEcccCCCCHHHHHHHHHHHHhhhcC
Q 024610          228 ---YIFLLDKFGRIRWQGFGMATPEELSSLLSCTSLLLEG  264 (265)
Q Consensus       228 ---YVyLVD~~grIRWagsG~at~~E~e~L~k~~~~Ll~e  264 (265)
                         .+||||++|+|++...|..++++++   +.++.|+++
T Consensus       133 ~~~~~~lid~~G~i~~~~~g~~~~~~l~---~~i~~ll~~  169 (170)
T 2p5q_A          133 WNFAKFLVNKDGQVVDRYYPTTSPLSLE---RDIKQLLEI  169 (170)
T ss_dssp             STTCEEEECTTSCEEEEECTTSCGGGGH---HHHHHHTTC
T ss_pred             ccccEEEECCCCCEEEeeCCCCCHHHHH---HHHHHHhhc
Confidence               8999999999999999988887654   445556654

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=98.71  E-value=7.9e-08  Score=77.60  Aligned_cols=133  Identities=14%  Similarity=0.093  Sum_probs=79.1

Q ss_pred             cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCCe
Q 024610           95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKNV  164 (265)
Q Consensus        95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~v  164 (265)
                      +..+|++.+.+++|+++++.+            ++||+.||.++         ++||.+|..          .+.+ .++
T Consensus         8 g~~~p~f~l~~~~G~~~~l~~------------~~gk~vlv~f~---------a~~C~~C~~~~~~l~~l~~~~~~-~~~   65 (169)
T 2v1m_A            8 WNSIYEFTVKDINGVDVSLEK------------YRGHVCLIVNV---------ACKCGATDKNYRQLQEMHTRLVG-KGL   65 (169)
T ss_dssp             CCSGGGCEEEBTTSCEEEGGG------------GTTSEEEEEEE---------CSSSTTHHHHHHHHHHHHHHHGG-GTE
T ss_pred             CcccccceeecCCCCCccHHH------------cCCCEEEEEEe---------eccCCchHHHHHHHHHHHHHhhc-CCe
Confidence            456899999999999998653            36899888666         899999862          2222 369


Q ss_pred             eEEEEeccc-----chhhccccchHHHHHHHHhcCCCCCccccceeEEE-cCChH--------HHHHH-hccc---CCcc
Q 024610          165 HLYEVSFID-----SWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYS-FGDHY--------YFRKE-LKIL---NLLT  226 (265)
Q Consensus       165 qiv~In~~e-----~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~-~g~~~--------~iRe~-Lgi~---N~~v  226 (265)
                      ++|.|++++     ......  ++.++...  .+++.        .++. .+...        .+++. .|+.   -..+
T Consensus        66 ~vv~v~~d~~~~~~~~~~~~--~~~~~~~~--~~~~~--------~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~  133 (169)
T 2v1m_A           66 RILAFPCNQFGGQEPWAEAE--IKKFVTEK--YGVQF--------DMFSKIKVNGSDADDLYKFLKSRQHGTLTNNIKWN  133 (169)
T ss_dssp             EEEEEECCCSTTCCCSCHHH--HHHHHHHH--HCCCS--------EEBCCCCCSSTTSCHHHHHHHHHSCCSSSCSCCST
T ss_pred             EEEEEECCccCCCCCCCHHH--HHHHHHHh--cCCCC--------ceEEEEeecCccccHHHHHHHhhcCCccCCccccc
Confidence            999999863     111111  22221111  12221        1110 11111        11111 1432   1235


Q ss_pred             cEEEEEeCCCcEEEcccCCCCHHHHHHHHHHHHhhhcC
Q 024610          227 GYIFLLDKFGRIRWQGFGMATPEELSSLLSCTSLLLEG  264 (265)
Q Consensus       227 GYVyLVD~~grIRWagsG~at~~E~e~L~k~~~~Ll~e  264 (265)
                      +.+||||++|+|++...|..+++++   .+.++.||++
T Consensus       134 P~~~lid~~G~i~~~~~g~~~~~~l---~~~i~~ll~~  168 (169)
T 2v1m_A          134 FSKFLVDRQGQPVKRYSPTTAPYDI---EGDIMELLEK  168 (169)
T ss_dssp             TCEEEECTTSCEEEEECTTSCGGGG---HHHHHHHHHC
T ss_pred             ceEEEECCCCCEEEEcCCCCCHHHH---HHHHHHHhcc
Confidence            7899999999999999998887664   4445556554

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=98.69  E-value=5.2e-08  Score=81.86  Aligned_cols=117  Identities=9%  Similarity=0.022  Sum_probs=76.9

Q ss_pred             cccCCCceeeCC-CC--CeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccC
Q 024610           95 AVKFPDLDVSYS-DR--TTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDS  161 (265)
Q Consensus        95 AlyFPnl~~~~l-~G--~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~  161 (265)
                      ....|+|.+.++ +|  +++++.+            ++||+.||.+|  +      .+||.+|..          .+.+ 
T Consensus         4 G~~aP~f~l~~~~~G~~~~v~l~~------------~~Gk~vvl~F~--~------~~~Cp~C~~e~~~l~~~~~~~~~-   62 (186)
T 1n8j_A            4 NTKIKPFKNQAFKNGEFIEVTEKD------------TEGRWSVFFFY--P------ADFTFVSPTELGDVADHYEELQK-   62 (186)
T ss_dssp             TCBCCCCEEEEEETTEEEEEEHHH------------HTTSEEEEEEC--S------CTTCSHHHHHHHHHHHHHHHHHH-
T ss_pred             CCcCCCcEeecccCCcceEEEHHH------------HCCCeEEEEEE--C------CCCCCccHHHHHHHHHHHHHHHH-
Confidence            456899999998 59  8887642            36898777544  1      589998862          2322 


Q ss_pred             CCeeEEEEecccchhhccccchHHHHHHHHhcCCC-CCccccceeEEEcCChHHHHHHhcccCC----cccEEEEEeCCC
Q 024610          162 KNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDA-GENVLQRQIVYSFGDHYYFRKELKILNL----LTGYIFLLDKFG  236 (265)
Q Consensus       162 ~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~-~~~~l~~~~~y~~g~~~~iRe~Lgi~N~----~vGYVyLVD~~g  236 (265)
                      .++++|-|++++...     ++.+    +++ .+. +.   ....+ ..+....+-+++|+...    .++.+||||++|
T Consensus        63 ~~v~vv~Is~d~~~~-----~~~~----~~~-~~~~~~---~~fp~-l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G  128 (186)
T 1n8j_A           63 LGVDVYSVSTDTHFT-----HKAW----HSS-SETIAK---IKYAM-IGDPTGALTRNFDNMREDEGLADRATFVVDPQG  128 (186)
T ss_dssp             TTEEEEEEESSCHHH-----HHHH----HHH-CTTGGG---CCSEE-EECTTSHHHHHTTCEETTTTEECEEEEEECTTS
T ss_pred             CCCEEEEEECCCHHH-----HHHH----HHH-cCcccC---CceeE-EECCchHHHHHhCCccCCCCceeeEEEEECCCC
Confidence            479999999875321     2332    122 210 00   11222 24656778899998742    378999999999


Q ss_pred             cEEEcccCCC
Q 024610          237 RIRWQGFGMA  246 (265)
Q Consensus       237 rIRWagsG~a  246 (265)
                      +||+...|..
T Consensus       129 ~i~~~~~~~~  138 (186)
T 1n8j_A          129 IIQAIEVTAE  138 (186)
T ss_dssp             BEEEEEEECT
T ss_pred             eEEEEEecCC
Confidence            9999988764

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=98.68  E-value=9.3e-08  Score=79.50  Aligned_cols=128  Identities=13%  Similarity=0.119  Sum_probs=82.9

Q ss_pred             ccccCCCceee-CCCCCeeeccCCCCCCccCccccCCCce-EEEEEeeeccchHHHhhhcchhHH----------hhccC
Q 024610           94 AAVKFPDLDVS-YSDRTTLKLPVCSSGDVANADKAAIPKV-SLVCLTFRASSQAMVDSWSSPFFE----------AFSDS  161 (265)
Q Consensus        94 ~AlyFPnl~~~-~l~G~tl~~p~~~~~~~~~t~~~l~gKv-SIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~  161 (265)
                      .+...|++.+. +++|+++++.+            ++||+ .||.++         ++||.+|..          .+.+ 
T Consensus        20 ~g~~~p~f~l~~~~~G~~~~l~~------------~~gk~~vlv~F~---------a~~C~~C~~~~~~l~~l~~~~~~-   77 (196)
T 2ywi_A           20 LGKQAPPFALTNVIDGNVVRLED------------VKSDAATVIMFI---------CNHCPFVKHVQHELVRLANDYMP-   77 (196)
T ss_dssp             TTCBCCCCEEEETTTCCEEEHHH------------HCCSSEEEEEEC---------CSSCHHHHHHHHHHHHHHHHHGG-
T ss_pred             cCCcCCceeeeecCCCCEEeHHH------------hCCCCeEEEEEe---------CCCCccHHHHHHHHHHHHHHHHh-
Confidence            34568999999 99999998653            35775 666444         899998863          2222 


Q ss_pred             CCeeEEEEecccch-----hhccccchHHHHHHHHh-cCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCC
Q 024610          162 KNVHLYEVSFIDSW-----LLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKF  235 (265)
Q Consensus       162 ~~vqiv~In~~e~~-----lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~  235 (265)
                      .++++|.|++++..     ....  ++.+    +++ +++        ..+ ..+....+.+.+++..  ++.+||||++
T Consensus        78 ~~v~vv~v~~d~~~~~~~d~~~~--~~~~----~~~~~~~--------~~~-~~d~~~~~~~~~~v~~--~P~~~lid~~  140 (196)
T 2ywi_A           78 KGVSFVAINSNDAEQYPEDSPEN--MKKV----AEELGYP--------FPY-LYDETQEVAKAYDAAC--TPDFYIFDRD  140 (196)
T ss_dssp             GTCEEEEEECSCTTTCGGGSHHH--HHHH----HHHHTCC--------SCE-EECSSCHHHHHHTCCE--ESEEEEEETT
T ss_pred             CCcEEEEEECCccccccccCHHH--HHHH----HHHcCCC--------ceE-EECCchHHHHHhCCCC--CCeEEEEcCC
Confidence            26999999995311     0011  2332    121 222        112 2466677889999875  8999999999


Q ss_pred             CcEEEcc---------cCCCCHHHHHHHHHHHHhhhc
Q 024610          236 GRIRWQG---------FGMATPEELSSLLSCTSLLLE  263 (265)
Q Consensus       236 grIRWag---------sG~at~~E~e~L~k~~~~Ll~  263 (265)
                      |+|+|.+         .|..++++++.   .++.|++
T Consensus       141 G~i~~~~~~~~~~~~~~g~~~~~~l~~---~i~~ll~  174 (196)
T 2ywi_A          141 LKCVYRGQLDDSRPNNGIPVTGESIRA---ALDALLE  174 (196)
T ss_dssp             CBEEEEECSSSCCTTTCCCCCCHHHHH---HHHHHHH
T ss_pred             CeEEEccccCcccccccCccCHHHHHH---HHHHHHc
Confidence            9999995         45556666544   4444544

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=98.68  E-value=7.7e-08  Score=83.74  Aligned_cols=140  Identities=14%  Similarity=0.125  Sum_probs=84.8

Q ss_pred             cccccCCCceeeCC--CC--CeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hh
Q 024610           93 LAAVKFPDLDVSYS--DR--TTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AF  158 (265)
Q Consensus        93 ~~AlyFPnl~~~~l--~G--~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~  158 (265)
                      .....+|+|.+.++  +|  +++++.+           .++||+.||.+|  .      ++||.+|..          .|
T Consensus        26 ~~G~~aP~F~l~~~~~~G~~~~v~L~d-----------~~~Gk~vvl~F~--p------atwCp~C~~e~p~l~~l~~~~   86 (221)
T 2c0d_A           26 LVTKKAYNFTAQGLNKNNEIINVDLSS-----------FIGQKYCCLLFY--P------LNYTFVCPTEIIEFNKHIKDF   86 (221)
T ss_dssp             CTTSBCCCCEEEEECTTSCEEEEEGGG-----------GTTTCEEEEEEC--C------CCTTTCCHHHHHHHHHTHHHH
T ss_pred             CCCCCCCCeEEeccccCCCccEEeHHH-----------HcCCCeEEEEEE--c------CCCCCchHHHHHHHHHHHHHH
Confidence            44567899999998  99  8887542           126898777444  2      789998763          22


Q ss_pred             ccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhccc---CCcccEEEEEeCC
Q 024610          159 SDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKIL---NLLTGYIFLLDKF  235 (265)
Q Consensus       159 ~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~---N~~vGYVyLVD~~  235 (265)
                      .+ .++++|.|++++...     ++.+ ....++...-+.   ....+ ..+....+-+++|+.   ...++.+||||++
T Consensus        87 ~~-~~v~vv~Is~D~~~~-----~~~~-~~~~~~~~g~~~---~~fp~-l~D~~~~~~~~ygv~~~~g~~~P~~~lID~~  155 (221)
T 2c0d_A           87 EN-KNVELLGISVDSVYS-----HLAW-KNMPIEKGGIGN---VEFTL-VSDINKDISKNYNVLYDNSFALRGLFIIDKN  155 (221)
T ss_dssp             HH-TTEEEEEEESSCHHH-----HHHH-HHSCGGGTCCCS---CSSEE-EECTTSHHHHHTTCEETTTEECEEEEEECTT
T ss_pred             HH-CCCEEEEEeCCCHHH-----HHHH-HHHhhhhcCccC---CceEE-EECCchHHHHHcCCcccCCCccceEEEECCC
Confidence            22 579999999965321     2222 211211100000   11222 245567788999985   1147899999999


Q ss_pred             CcEEEcccCCCC-HHHHHHHHHHHHhhh
Q 024610          236 GRIRWQGFGMAT-PEELSSLLSCTSLLL  262 (265)
Q Consensus       236 grIRWagsG~at-~~E~e~L~k~~~~Ll  262 (265)
                      |+|||...|..+ +...+.+.+.++.|+
T Consensus       156 G~I~~~~~g~~~~~~~~~ell~~l~~L~  183 (221)
T 2c0d_A          156 GCVRHQTVNDLPIGRNVQEVLRTIDSII  183 (221)
T ss_dssp             SBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             CeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence            999999877532 223344444444444

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=98.68  E-value=1.2e-07  Score=81.44  Aligned_cols=57  Identities=9%  Similarity=-0.011  Sum_probs=43.4

Q ss_pred             ccccCCCceeeCCC-CCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCC
Q 024610           94 AAVKFPDLDVSYSD-RTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSK  162 (265)
Q Consensus        94 ~AlyFPnl~~~~l~-G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~  162 (265)
                      .+..+|+|.+.+++ |+++++.+            ++||+.||.+|         +|||.||.+          .+.+ .
T Consensus        22 ~~~~~p~f~l~~~~~G~~v~l~~------------~~Gk~vlv~Fw---------atwC~~C~~e~p~l~~l~~~~~~-~   79 (208)
T 2f8a_A           22 SMQSVYAFSARPLAGGEPVSLGS------------LRGKVLLIENV---------ASLGGTTVRDYTQMNELQRRLGP-R   79 (208)
T ss_dssp             CCCCGGGCEECBTTCSSCEEGGG------------GTTSEEEEEEE---------CSSSTTHHHHHHHHHHHHHHHGG-G
T ss_pred             hcCccCceEeeeCCCCCCccHHH------------cCCCEEEEEEE---------CCCCccHHHHHHHHHHHHHHccC-C
Confidence            34568999999999 99998652            46998888555         899999863          1222 3


Q ss_pred             CeeEEEEecc
Q 024610          163 NVHLYEVSFI  172 (265)
Q Consensus       163 ~vqiv~In~~  172 (265)
                      ++++|.|+++
T Consensus        80 g~~vv~v~~d   89 (208)
T 2f8a_A           80 GLVVLGFPCN   89 (208)
T ss_dssp             TEEEEEEECC
T ss_pred             CeEEEEEECC
Confidence            6999999986

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=98.67  E-value=7.6e-08  Score=76.16  Aligned_cols=114  Identities=15%  Similarity=0.119  Sum_probs=77.0

Q ss_pred             ccccCCC-ceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCC
Q 024610           94 AAVKFPD-LDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSK  162 (265)
Q Consensus        94 ~AlyFPn-l~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~  162 (265)
                      .+..+|+ +.+.+++|+++++.+            ++||+.||-++         ++||.+|..          .+.+..
T Consensus         3 ~~~~~P~~f~l~~~~g~~~~l~~------------~~gk~vll~F~---------a~wC~~C~~~~~~l~~l~~~~~~~~   61 (144)
T 1i5g_A            3 LKKFFPYSTNVLKGAAADIALPS------------LAGKTVFFYFS---------ASWCPPSRAFTPQLIDFYKAHAEKK   61 (144)
T ss_dssp             TTTSCSSCSEEEETTEEEEEGGG------------GTTSEEEEEEE---------CTTCHHHHHHHHHHHHHHHHHTTTT
T ss_pred             hhhhCCCceEEEcCCCCEecHHH------------cCCCEEEEEEE---------CCCCHHHHHHHHHHHHHHHHhccCC
Confidence            3457899 999999999998653            35898888655         899999862          233335


Q ss_pred             CeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEe-CCCcEEEc
Q 024610          163 NVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLD-KFGRIRWQ  241 (265)
Q Consensus       163 ~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD-~~grIRWa  241 (265)
                      ++++|.|+++++.-  .  ++.+     .+..++.     ...+...+....+.+.+|+..  ++.+||+| ++|+|++.
T Consensus        62 ~~~vv~v~~d~~~~--~--~~~~-----~~~~~~~-----~~~~~~~d~~~~~~~~~~v~~--~P~~~lid~~~G~i~~~  125 (144)
T 1i5g_A           62 NFEVMLISWDESAE--D--FKDY-----YAKMPWL-----ALPFEDRKGMEFLTTGFDVKS--IPTLVGVEADSGNIITT  125 (144)
T ss_dssp             TEEEEEEECCSSHH--H--HHHH-----HTTCSSE-----ECCTTCHHHHHHHHHHTTCCS--SSEEEEEETTTCCEEES
T ss_pred             CEEEEEEeCCCCHH--H--HHHH-----HHhCCcc-----ccccCchHHHHHHHHHcCCCC--CCEEEEEECCCCcEEec
Confidence            89999999986421  1  2222     2222321     111100122467889999875  99999999 99999998


Q ss_pred             ccC
Q 024610          242 GFG  244 (265)
Q Consensus       242 gsG  244 (265)
                      ..+
T Consensus       126 ~~~  128 (144)
T 1i5g_A          126 QAR  128 (144)
T ss_dssp             CHH
T ss_pred             cch
Confidence            754

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=98.66  E-value=8.3e-08  Score=82.60  Aligned_cols=135  Identities=13%  Similarity=0.052  Sum_probs=82.1

Q ss_pred             cccCCCceeeCC---CCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccC
Q 024610           95 AVKFPDLDVSYS---DRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDS  161 (265)
Q Consensus        95 AlyFPnl~~~~l---~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~  161 (265)
                      ...+|+|.+.++   +|+++++.+            ++||+.||.  ||.      ++||.+|..          .|.+ 
T Consensus        22 G~~aP~f~l~~~~~~~g~~v~l~d------------~~Gk~vvl~--F~p------at~C~~C~~e~~~l~~l~~~~~~-   80 (211)
T 2pn8_A           22 SMPAPYWEGTAVIDGEFKELKLTD------------YRGKYLVFF--FYP------LDFTFVCPTEIIAFGDRLEEFRS-   80 (211)
T ss_dssp             SCBCCCCEEEEEETTEEEEEEGGG------------GTTSEEEEE--ECS------CTTSSHHHHHHHHHHHTHHHHHT-
T ss_pred             CCcCCCeEeecccCCCCcEEEHHH------------hCCCeEEEE--EEC------CCCCCCCHHHHHHHHHHHHHHHH-
Confidence            446899998875   457887542            368987764  442      789998862          2222 


Q ss_pred             CCeeEEEEecccchhhccccchHHHHHHHHhc--CCCCCccccceeEEEcCChHHHHHHhcccC----CcccEEEEEeCC
Q 024610          162 KNVHLYEVSFIDSWLLCRSPIKRILLKIMRKS--KDAGENVLQRQIVYSFGDHYYFRKELKILN----LLTGYIFLLDKF  235 (265)
Q Consensus       162 ~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~--~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N----~~vGYVyLVD~~  235 (265)
                      .++++|-|++++...     ++.+ ....++.  +..     ....+ ..+....+-+++|+..    ..++.+||||++
T Consensus        81 ~~v~vv~Is~D~~~~-----~~~~-~~~~~~~~g~~~-----~~fp~-l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~  148 (211)
T 2pn8_A           81 INTEVVACSVDSQFT-----HLAW-INTPRRQGGLGP-----IRIPL-LSDLTHQISKDYGVYLEDSGHTLRGLFIIDDK  148 (211)
T ss_dssp             TTEEEEEEESSCHHH-----HHHH-HTSCGGGTCCCS-----CSSCE-EECTTSHHHHHTTCEETTTTEECEEEEEECTT
T ss_pred             CCCEEEEEECCCHHH-----HHHH-HHHhhhccCccC-----CceEE-EECCchHHHHHcCCcccCCCcccceEEEECCC
Confidence            589999999965321     2222 1111110  111     11222 2355678899999963    248899999999


Q ss_pred             CcEEEcccCCCCH-HHHHHHHHHHHhhh
Q 024610          236 GRIRWQGFGMATP-EELSSLLSCTSLLL  262 (265)
Q Consensus       236 grIRWagsG~at~-~E~e~L~k~~~~Ll  262 (265)
                      |+||+...|..+. ...+.+.+.++.|+
T Consensus       149 G~I~~~~~g~~~~~~~~~ell~~l~~l~  176 (211)
T 2pn8_A          149 GILRQITLNDLPVGRSVDETLRLVQAFQ  176 (211)
T ss_dssp             SBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             CEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence            9999998775322 23344444444443

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=98.65  E-value=1.4e-07  Score=83.10  Aligned_cols=132  Identities=12%  Similarity=0.002  Sum_probs=84.2

Q ss_pred             ccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhh-cchhH-----H---hhccC-CC
Q 024610           94 AAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSW-SSPFF-----E---AFSDS-KN  163 (265)
Q Consensus        94 ~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw-~~p~~-----e---~~~~~-~~  163 (265)
                      .....|+|.+.+.+|+++++.+            ++||+.||.+|         .+| |.+|.     .   .|.+. .+
T Consensus        24 vG~~APdFtL~d~~G~~vsLsd------------~~Gk~vVL~F~---------ps~~cp~C~~~~~~~El~~~~~~~~g   82 (224)
T 3keb_A           24 KGDYLPSFMLVDDQKHDAALES------------FSHTPKLIVTL---------LSVDEDEHAGLLLLRETRRFLDSWPH   82 (224)
T ss_dssp             TTCBCCCCEEEETTSCEEEGGG------------GTTCCEEEEEC---------SCTTCSTTTSHHHHHHHHHHHTTCTT
T ss_pred             CCCCCCCeEEECCCCCEEeHHH------------hCCCcEEEEEE---------eCCCCCCCCCCccHHHHHHHHHHcCC
Confidence            3456899999999999998653            36898777554         566 66666     2   33333 78


Q ss_pred             eeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCC-hHHHHHHhcccCCc-------ccEEEEEeCC
Q 024610          164 VHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGD-HYYFRKELKILNLL-------TGYIFLLDKF  235 (265)
Q Consensus       164 vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~-~~~iRe~Lgi~N~~-------vGYVyLVD~~  235 (265)
                      +++|-||.++-..     .+.| ..  +.+++.       ..+ ..|. ...+-+++|+....       ++++||||++
T Consensus        83 v~VvgIS~Ds~~~-----~~~f-~~--~~gl~~-------fpl-LsD~~~~~vak~yGv~~~~~~~~G~~~p~tfvID~d  146 (224)
T 3keb_A           83 LKLIVITVDSPSS-----LARA-RH--EHGLPN-------IAL-LSTLRGRDFHKRYGVLITEYPLSGYTSPAIILADAA  146 (224)
T ss_dssp             SEEEEEESSCHHH-----HHHH-HH--HHCCTT-------CEE-EESTTCTTHHHHTTCBCCSTTSTTCBCCEEEEECTT
T ss_pred             CEEEEEECCCHHH-----HHHH-HH--HcCCCC-------ceE-EEcCCchHHHHHhCCccccccccCCccCEEEEEcCC
Confidence            9999999875321     2332 11  112221       222 2354 47899999997543       7899999999


Q ss_pred             CcEEEcccCCCC--HHHHHHHHHHHHhhh
Q 024610          236 GRIRWQGFGMAT--PEELSSLLSCTSLLL  262 (265)
Q Consensus       236 grIRWagsG~at--~~E~e~L~k~~~~Ll  262 (265)
                      |+|||.+-+...  .-+.+.+.+.++.|.
T Consensus       147 G~I~~~~~~~~~~~~pd~~evl~~L~~l~  175 (224)
T 3keb_A          147 NVVHYSERLANTRDFFDFDAIEKLLQEGE  175 (224)
T ss_dssp             CBEEEEEECSBTTCCCCHHHHHHHHHHHH
T ss_pred             CEEEEEEecCCCCCCCCHHHHHHHHHHhh
Confidence            999998765422  223444555555554

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=98.63  E-value=3e-07  Score=73.77  Aligned_cols=120  Identities=13%  Similarity=0.077  Sum_probs=79.2

Q ss_pred             eeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH------hh-cc--CCCeeEEEEecc
Q 024610          102 DVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE------AF-SD--SKNVHLYEVSFI  172 (265)
Q Consensus       102 ~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~-~~--~~~vqiv~In~~  172 (265)
                      .+.+++|+++++..            .+||+.||.++         ++||.+|..      .+ ..  .+++++|.|+++
T Consensus        22 ~l~~~~g~~~~~~~------------~~gk~vlv~F~---------a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~   80 (164)
T 2h30_A           22 TMKTADNRPASVYL------------KKDKPTLIKFW---------ASWCPLCLSELGQAEKWAQDAKFSSANLITVASP   80 (164)
T ss_dssp             TCEETTSSBGGGGC------------CTTSCEEEEEC---------CTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECT
T ss_pred             ccCCCCCCEeeHHH------------hCCCEEEEEEE---------CCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcC
Confidence            56678899887542            35899888665         899999873      12 22  357999999986


Q ss_pred             cchhhc-cccchHHHHHHHHh-cCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHH
Q 024610          173 DSWLLC-RSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEE  250 (265)
Q Consensus       173 e~~lk~-~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E  250 (265)
                      +.--.. ...++.+    +.+ .++.       ..+ ..+....+.+.+++.-  ++.+||+|++|+|++...|..+.++
T Consensus        81 ~~~~~~~~~~~~~~----~~~~~~~~-------~~~-~~d~~~~~~~~~~v~~--~P~~~lid~~G~i~~~~~g~~~~~~  146 (164)
T 2h30_A           81 GFLHEKKDGEFQKW----YAGLNYPK-------LPV-VTDNGGTIAQNLNISV--YPSWALIGKDGDVQRIVKGSINEAQ  146 (164)
T ss_dssp             TSTTCCCTTHHHHH----HTTSCCTT-------SCE-EECTTCHHHHHTTCCS--SSEEEEECTTSCEEEEEESCCCHHH
T ss_pred             CCccccCHHHHHHH----HHhCCCCc-------ceE-EEcCchHHHHHcCCCc--cceEEEECCCCcEEEEEcCCCCHHH
Confidence            421100 0002222    221 1110       111 2466678899999975  9999999999999999999998887


Q ss_pred             HHHHHH
Q 024610          251 LSSLLS  256 (265)
Q Consensus       251 ~e~L~k  256 (265)
                      ++.+.+
T Consensus       147 l~~~i~  152 (164)
T 2h30_A          147 ALALIR  152 (164)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            765543

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=98.62  E-value=1.8e-07  Score=78.57  Aligned_cols=134  Identities=13%  Similarity=0.116  Sum_probs=83.0

Q ss_pred             cccCCCceeeCCC-------------C--CeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH---
Q 024610           95 AVKFPDLDVSYSD-------------R--TTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE---  156 (265)
Q Consensus        95 AlyFPnl~~~~l~-------------G--~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e---  156 (265)
                      +..+|+|.+.+++             |  +++++.+            ++||+.||.++  .      ++||.+|..   
T Consensus         7 G~~~P~f~l~~~~~~~~~~~~~~~~~G~~~~v~l~~------------~~gk~vvl~F~--~------a~~C~~C~~~~~   66 (195)
T 2bmx_A            7 GDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDE------------HPGKWRVVFFW--P------KDFTFVCPTEIA   66 (195)
T ss_dssp             TCBCCCCEEEEECSSCGGGSCCSSGGGGEEEEETTS------------STTCEEEEEEC--S------CTTSCCCHHHHH
T ss_pred             CCcCCCcCcccccccccccccccccCCCccEeeHHH------------hCCCcEEEEEE--c------CCCCCCcHHHHH
Confidence            4568999999888             6  6776542            36898777544  1      789998863   


Q ss_pred             -------hhccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCC---cc
Q 024610          157 -------AFSDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNL---LT  226 (265)
Q Consensus       157 -------~~~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~---~v  226 (265)
                             .+.+ .++++|.|++++.-.     ++.+    +++......   ....+ ..+....+.+.+|+...   .+
T Consensus        67 ~l~~l~~~~~~-~~v~vv~Vs~d~~~~-----~~~~----~~~~~~~~~---~~~~~-~~d~~~~~~~~~~v~~~~g~~~  132 (195)
T 2bmx_A           67 AFSKLNDEFED-RDAQILGVSIDSEFA-----HFQW----RAQHNDLKT---LPFPM-LSDIKRELSQAAGVLNADGVAD  132 (195)
T ss_dssp             HHHHTHHHHHT-TTEEEEEEESSCHHH-----HHHH----HHHCTTGGG---CCSCE-EECTTSHHHHHHTCBCTTSSBC
T ss_pred             HHHHHHHHHHH-CCCEEEEEECCCHHH-----HHHH----HHHhccccC---CceeE-EeCCchHHHHHhCCcccCCCcc
Confidence                   2222 379999999976211     2332    111100000   11222 23556778899998722   48


Q ss_pred             cEEEEEeCCCcEEEcccCCCC-HHHHHHHHHHHHhhh
Q 024610          227 GYIFLLDKFGRIRWQGFGMAT-PEELSSLLSCTSLLL  262 (265)
Q Consensus       227 GYVyLVD~~grIRWagsG~at-~~E~e~L~k~~~~Ll  262 (265)
                      +.+||||++|+|++...|... +...+.|.+.++.|+
T Consensus       133 P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  169 (195)
T 2bmx_A          133 RVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQ  169 (195)
T ss_dssp             EEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             ceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence            999999999999999988641 123344445555554

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=98.61  E-value=2.6e-07  Score=76.86  Aligned_cols=116  Identities=15%  Similarity=0.079  Sum_probs=77.1

Q ss_pred             cccCCCceeeCCCCC----eeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhcc
Q 024610           95 AVKFPDLDVSYSDRT----TLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSD  160 (265)
Q Consensus        95 AlyFPnl~~~~l~G~----tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~  160 (265)
                      +..+|+|.+.+++|+    ++++.+            ++||++||.++  .      ++||.+|..          .+.+
T Consensus         4 G~~~P~f~l~~~~g~~~~~~~~l~~------------~~gk~vvl~F~--~------a~~C~~C~~~~~~l~~~~~~~~~   63 (187)
T 1we0_A            4 GTEVQPFRAQAFQSGKDFFEVTEAD------------LKGKWSIVVFY--P------ADFSFVCPTELEDVQKEYAELKK   63 (187)
T ss_dssp             TCBCCCCEEEEECSSSCCEEEETTT------------TSSSEEEEEEC--S------CTTCSSCTHHHHHHHHHHHHHHH
T ss_pred             CCcCCCeEEeccCCCccceEecHHH------------HCCCCEEEEEE--C------CCCCcchHHHHHHHHHHHHHHHH
Confidence            346899999999999    887542            36898877443  2      789998752          2222


Q ss_pred             CCCeeEEEEecccchhhccccchHHHHHHHH--hcCCCCCccccceeEEEcCChHHHHHHhcccCC----cccEEEEEeC
Q 024610          161 SKNVHLYEVSFIDSWLLCRSPIKRILLKIMR--KSKDAGENVLQRQIVYSFGDHYYFRKELKILNL----LTGYIFLLDK  234 (265)
Q Consensus       161 ~~~vqiv~In~~e~~lk~~~~lk~~~~~~lr--k~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~----~vGYVyLVD~  234 (265)
                       .++++|.|++++.-.     ++.+ .....  ...+        ..+ ..+....+.+.+|+...    .++.+||||+
T Consensus        64 -~~v~vv~vs~d~~~~-----~~~~-~~~~~~~~~~~--------~~~-~~d~~~~~~~~~~v~~~~~g~~~P~~~lid~  127 (187)
T 1we0_A           64 -LGVEVYSVSTDTHFV-----HKAW-HENSPAVGSIE--------YIM-IGDPSQTISRQFDVLNEETGLADRGTFIIDP  127 (187)
T ss_dssp             -TTEEEEEEESSCHHH-----HHHH-HHSCHHHHTCC--------SEE-EECTTCHHHHHTTCEETTTTEECEEEEEECT
T ss_pred             -cCCEEEEEECCCHHH-----HHHH-HHHhccccCCC--------ceE-EECCchHHHHHhCCCcCCCCceeeEEEEECC
Confidence             379999999976321     2222 11110  0111        222 23556778899998732    4889999999


Q ss_pred             CCcEEEcccCCC
Q 024610          235 FGRIRWQGFGMA  246 (265)
Q Consensus       235 ~grIRWagsG~a  246 (265)
                      +|+|++...|..
T Consensus       128 ~G~i~~~~~g~~  139 (187)
T 1we0_A          128 DGVIQAIEINAD  139 (187)
T ss_dssp             TSBEEEEEEECT
T ss_pred             CCeEEEEEecCC
Confidence            999999988864

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=98.61  E-value=2.1e-07  Score=77.28  Aligned_cols=143  Identities=12%  Similarity=0.103  Sum_probs=77.6

Q ss_pred             ccccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhH-------Hhhc-cCCC
Q 024610           92 ALAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFF-------EAFS-DSKN  163 (265)
Q Consensus        92 a~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~-------e~~~-~~~~  163 (265)
                      .......|+|+++|.+|+++++.+            ++||+.||.++++     .+.+||.++.       +.+. ...+
T Consensus         6 ~P~~~~~PdF~L~d~~G~~v~l~d------------~~Gk~vll~F~~t-----~Cp~~Cp~~~~~l~~l~~~~~~~~~~   68 (170)
T 4hde_A            6 KPLNWDLETFQFTNQDGKPFGTKD------------LKGKVWVADFMFT-----NCQTVCPPMTANMAKLQKMAKEEKLD   68 (170)
T ss_dssp             SCCCBCCCCCEEECTTSCEEEHHH------------HTTSCEEEEEECT-----TCSSSHHHHHHHHHHHHHHHHHTTCC
T ss_pred             cCCCCcCCCcEEECCCCCEEeHHH------------hCCCEEEEEEECC-----CCCCcccHHHHHHHHHHHhhhccccc
Confidence            334556899999999999998652            4799999977632     1123333322       2333 2357


Q ss_pred             eeEEEEecccch-hhccccchHHHHHHHHhcCCCCCccccceeEEEcCC-hHHHHH----HhcccC--------CcccEE
Q 024610          164 VHLYEVSFIDSW-LLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGD-HYYFRK----ELKILN--------LLTGYI  229 (265)
Q Consensus       164 vqiv~In~~e~~-lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~-~~~iRe----~Lgi~N--------~~vGYV  229 (265)
                      +++|-|+++... ....  ++.+     .+....... -+ +.+  -|. ..++.+    ..+..-        .+++.+
T Consensus        69 v~~v~isvDp~~Dtp~~--l~~y-----~~~~~~~~~-~~-~~l--tg~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~  137 (170)
T 4hde_A           69 VQFVSFSVDPDLDKPEN--LKAF-----IQKFTEDTS-NW-NLL--TGYSLEDITKFSKDNFQSLVDKPENGQVIHGTSF  137 (170)
T ss_dssp             CEEEEEESCTTTCCHHH--HHHH-----HTTTCSCCT-TE-EEE--BCSCHHHHHHHHHHHHCCCCBCCTTSCCBCCCEE
T ss_pred             ceeEeeecCcccccHHH--HHHH-----HHHcCCCCC-Cc-eec--CcccHHHHHHHHHhcccccccCCCCceEEeeeEE
Confidence            999999997422 1111  2332     121111100 01 111  132 233322    222211        145689


Q ss_pred             EEEeCCCcEEEcccCCCCHHHHHHHHHHHHhhhc
Q 024610          230 FLLDKFGRIRWQGFGMATPEELSSLLSCTSLLLE  263 (265)
Q Consensus       230 yLVD~~grIRWagsG~at~~E~e~L~k~~~~Ll~  263 (265)
                      ||||++|+||+.-.|... .+.+.|.+-++.|++
T Consensus       138 ~liD~~G~i~~~~~g~~~-~~~~~l~~~ik~Lle  170 (170)
T 4hde_A          138 YLIDQNGKVMKKYSGISN-TPYEDIIRDMKRLAE  170 (170)
T ss_dssp             EEECTTSCEEEEEESSSS-CCHHHHHHHHHHHHC
T ss_pred             EEEcCCCeEEEEECCCCC-CCHHHHHHHHHHHhC
Confidence            999999999966555332 224556667777764

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=98.61  E-value=5.6e-08  Score=80.84  Aligned_cols=132  Identities=14%  Similarity=0.016  Sum_probs=75.2

Q ss_pred             cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCCe
Q 024610           95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKNV  164 (265)
Q Consensus        95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~v  164 (265)
                      +..+|++.+.+++|+++++.+            ++||+.||.++         ++||.+|..          .+.+ .++
T Consensus        26 g~~~p~f~l~~~~G~~~~l~~------------~~Gk~vlv~F~---------atwC~~C~~~~p~l~~l~~~~~~-~~v   83 (181)
T 2p31_A           26 EQDFYDFKAVNIRGKLVSLEK------------YRGSVSLVVNV---------ASECGFTDQHYRALQQLQRDLGP-HHF   83 (181)
T ss_dssp             -CCGGGCEEEBTTSCEEEGGG------------GTTSEEEEEEE---------CSSSTTHHHHHHHHHHHHHHHGG-GTE
T ss_pred             CCccCceEeecCCCCEecHHH------------cCCCEEEEEEe---------ccCCCCcHHHHHHHHHHHHHhhc-CCE
Confidence            456899999999999998652            36898888665         899999873          2222 369


Q ss_pred             eEEEEecccch-----hhccccchHHHHHHHHhcCCCCCccccceeEEEcCCh-HHHHHHhcccCCccc-------EEEE
Q 024610          165 HLYEVSFIDSW-----LLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDH-YYFRKELKILNLLTG-------YIFL  231 (265)
Q Consensus       165 qiv~In~~e~~-----lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~-~~iRe~Lgi~N~~vG-------YVyL  231 (265)
                      ++|.|++++..     ....  ++.++...  .+++..  .+....  .-+.. ..+-. .++.  .+|       .+||
T Consensus        84 ~vv~vs~d~~~~~e~~~~~~--~~~~~~~~--~~~~~p--~~~~~d--~~g~~~~~~~~-~~~~--~~P~~~~~~~~~~l  152 (181)
T 2p31_A           84 NVLAFPCNQFGQQEPDSNKE--IESFARRT--YSVSFP--MFSKIA--VTGTGAHPAFK-YLAQ--TSGKEPTWNFWKYL  152 (181)
T ss_dssp             EEEEEECCCSTTCCCSCHHH--HHHHHHHH--HCCCSC--BBCCCC--CSSTTSCHHHH-HHHH--HHSCCCCSTTCEEE
T ss_pred             EEEEEECcCCCCCCCCCHHH--HHHHHHhh--cCCCce--eEeecc--cCCccchhhhh-hhhh--cCCCccccceeEEE
Confidence            99999986310     0011  23331110  122210  000000  00110 10100 1111  245       7999


Q ss_pred             EeCCCcEEEcccCCCCHHHHHHHHHHHHhhh
Q 024610          232 LDKFGRIRWQGFGMATPEELSSLLSCTSLLL  262 (265)
Q Consensus       232 VD~~grIRWagsG~at~~E~e~L~k~~~~Ll  262 (265)
                      ||++|+|++...|..++++++   +.++.||
T Consensus       153 id~~G~i~~~~~g~~~~~~l~---~~i~~ll  180 (181)
T 2p31_A          153 VAPDGKVVGAWDPTVSVEEVR---PQITALV  180 (181)
T ss_dssp             ECTTSCEEEEECTTSCHHHHH---HHHHTTC
T ss_pred             EcCCCCEEEEeCCCCCHHHHH---HHHHHHh
Confidence            999999999999988887654   4444454

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=98.61  E-value=5.6e-08  Score=79.69  Aligned_cols=132  Identities=17%  Similarity=0.114  Sum_probs=75.1

Q ss_pred             ccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH---------hhccCCCeeE
Q 024610           96 VKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE---------AFSDSKNVHL  166 (265)
Q Consensus        96 lyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e---------~~~~~~~vqi  166 (265)
                      ..+|++.+++++|+++++.+            ++||+.||.++         ++||.||.+         .+.+ .++++
T Consensus        10 ~~~~~f~l~d~~G~~~~l~~------------~~Gk~vll~F~---------a~wC~~C~~~~~l~~l~~~~~~-~~v~v   67 (171)
T 3cmi_A           10 SEFYKLAPVDKKGQPFPFDQ------------LKGKVVLIVNV---------ASKCGFTPQYKELEALYKRYKD-EGFTI   67 (171)
T ss_dssp             CGGGGCCCBBTTSCBCCGGG------------GTTCEEEEEEE---------ESSSCCHHHHHHHHHHHHHHGG-GTEEE
T ss_pred             hheeeeEEEcCCCCEecHHH------------cCCCEEEEEEE---------ecCCCcchhHHHHHHHHHHhcc-CCeEE
Confidence            35799999999999987652            36899888665         899999872         1222 36999


Q ss_pred             EEEecc-------cchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCC-h---HH--HHHHhcccCCccc------
Q 024610          167 YEVSFI-------DSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGD-H---YY--FRKELKILNLLTG------  227 (265)
Q Consensus       167 v~In~~-------e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~-~---~~--iRe~Lgi~N~~vG------  227 (265)
                      |.|+++       ++.  ..  ++.++...  .+++.  ..+....  .-+. .   +.  ..+..|+..  ++      
T Consensus        68 v~vs~d~~~~~~~d~~--~~--~~~~~~~~--~~~~~--p~~~d~d--~~~~~~~~~~~~~~~~~~~v~~--~P~i~~~~  135 (171)
T 3cmi_A           68 IGFPCNQFGHQEPGSD--EE--IAQFCQLN--YGVTF--PIMKKID--VNGGNEDPVYKFLKSQKSGMLG--LRGIKWNF  135 (171)
T ss_dssp             EEEEECSCC------------------------CCCS--CBBCCCB--SSSTTBCHHHHHHHHHSCCSSS--CCSCCSTT
T ss_pred             EEEECcccCCCCCCCH--HH--HHHHHHhc--cCCCc--eEEeecc--CCCccchHHHHHHHhccCCcCC--CCcccccc
Confidence            999985       211  11  22221010  01111  0000000  0000 0   11  112345553  66      


Q ss_pred             EEEEEeCCCcEEEcccCCCCHHHHHHHHHHHHhhhcC
Q 024610          228 YIFLLDKFGRIRWQGFGMATPEELSSLLSCTSLLLEG  264 (265)
Q Consensus       228 YVyLVD~~grIRWagsG~at~~E~e~L~k~~~~Ll~e  264 (265)
                      .+||||++|+|++...|..++++++.   .++.|+++
T Consensus       136 ~~~lid~~G~i~~~~~g~~~~~~l~~---~i~~ll~~  169 (171)
T 3cmi_A          136 EKFLVDKKGKVYERYSSLTKPSSLSE---TIEELLKE  169 (171)
T ss_dssp             CEEEECSSSCEEEEECTTSCGGGGHH---HHHHHHTC
T ss_pred             eEEEECCCCCEEEEeCCCCCHHHHHH---HHHHHHHh
Confidence            89999999999999999988877544   44445543

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=98.59  E-value=2.7e-07  Score=78.06  Aligned_cols=123  Identities=13%  Similarity=0.069  Sum_probs=78.2

Q ss_pred             ccccCCCceeeCC--CC--CeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhc
Q 024610           94 AAVKFPDLDVSYS--DR--TTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFS  159 (265)
Q Consensus        94 ~AlyFPnl~~~~l--~G--~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~  159 (265)
                      .+..+|+|.+.+.  +|  +++++.+            ++||+.||.++  .      .+||.+|..          .+.
T Consensus         8 ~G~~aP~f~l~~~~~~g~~~~v~l~~------------~~gk~vvl~F~--~------~~~C~~C~~~~~~l~~l~~~~~   67 (202)
T 1uul_A            8 DLHPAPDFNETALMPNGTFKKVALTS------------YKGKWLVLFFY--P------MDFTFVCPTEICQFSDRVKEFS   67 (202)
T ss_dssp             TTSBCCCCEEEEECTTSCEEEEEGGG------------GTTSEEEEEEC--S------CTTCSHHHHHHHHHHHTHHHHH
T ss_pred             CCCcCCCcEeeeeecCCCccEEEHHH------------hCCCeEEEEEE--C------CCCCCcCHHHHHHHHHHHHHHH
Confidence            3556899999887  78  8887653            36898777443  2      789998862          222


Q ss_pred             cCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCC----cccEEEEEeCC
Q 024610          160 DSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNL----LTGYIFLLDKF  235 (265)
Q Consensus       160 ~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~----~vGYVyLVD~~  235 (265)
                       ..++++|.|++++...     ++.+ ....++.-+...   ....+ ..+....+-+.+|+...    .++.+||||++
T Consensus        68 -~~~v~vi~Is~D~~~~-----~~~~-~~~~~~~~~~~~---~~~p~-l~D~~~~~~~~ygv~~~~~g~~~P~~~lid~~  136 (202)
T 1uul_A           68 -DIGCEVLACSMDSEYS-----HLAW-TSIERKRGGLGQ---MNIPI-LADKTKCIMKSYGVLKEEDGVAYRGLFIIDPK  136 (202)
T ss_dssp             -TTTEEEEEEESSCHHH-----HHHH-HHSCGGGTCCCS---CSSCE-EECTTCHHHHHHTCEETTTTEECEEEEEECTT
T ss_pred             -HCCCEEEEEeCCCHHH-----HHHH-HHHHHhhCCCCC---CceeE-EECCchHHHHHcCCccCCCCceeeEEEEECCC
Confidence             2579999999975321     2222 111111111000   11222 23556788899998732    48889999999


Q ss_pred             CcEEEcccCCCC
Q 024610          236 GRIRWQGFGMAT  247 (265)
Q Consensus       236 grIRWagsG~at  247 (265)
                      |+|++...|..+
T Consensus       137 G~i~~~~~g~~~  148 (202)
T 1uul_A          137 QNLRQITVNDLP  148 (202)
T ss_dssp             SBEEEEEEECTT
T ss_pred             CEEEEEEeCCCC
Confidence            999999877644

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=98.59  E-value=2.1e-07  Score=75.39  Aligned_cols=127  Identities=9%  Similarity=0.052  Sum_probs=80.5

Q ss_pred             cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCc--eEEEEEeeeccchHHHhhhcchhHH----------hhccCC
Q 024610           95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPK--VSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSK  162 (265)
Q Consensus        95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gK--vSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~  162 (265)
                      ...+|+|.+.+.+|+++++.+.            +||  +.||.+| +       .+||.+|..          .+.+. 
T Consensus        10 G~~~P~f~l~~~~G~~v~l~~~------------~gk~~~vvl~f~-~-------~~~c~~C~~~~~~l~~~~~~~~~~-   68 (159)
T 2a4v_A           10 GDPIPDLSLLNEDNDSISLKKI------------TENNRVVVFFVY-P-------RASTPGSTRQASGFRDNYQELKEY-   68 (159)
T ss_dssp             TCBCCSCEEECTTSCEEEHHHH------------HHHCSEEEEEEC-S-------SSSSHHHHHHHHHHHHHHHHHTTT-
T ss_pred             CCCCCCeEEECCCCCEEeHHHH------------hCCCCeEEEEEc-C-------CCCCCCHHHHHHHHHHHHHHHHhC-
Confidence            4568999999999999986532            355  5555332 3       789998862          23333 


Q ss_pred             CeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCc----ccEEEEEeCCCcE
Q 024610          163 NVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLL----TGYIFLLDKFGRI  238 (265)
Q Consensus       163 ~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~----vGYVyLVD~~grI  238 (265)
                      + ++|-|++++.-.     ++.+ ...  .+++        ..+ ..+....+-+.+|+...-    ...+||| ++|+|
T Consensus        69 ~-~vv~is~d~~~~-----~~~~-~~~--~~~~--------~~~-l~D~~~~~~~~~gv~~~p~~g~~~~~~li-~~G~i  129 (159)
T 2a4v_A           69 A-AVFGLSADSVTS-----QKKF-QSK--QNLP--------YHL-LSDPKREFIGLLGAKKTPLSGSIRSHFIF-VDGKL  129 (159)
T ss_dssp             C-EEEEEESCCHHH-----HHHH-HHH--HTCS--------SEE-EECTTCHHHHHHTCBSSSSSCBCCEEEEE-ETTEE
T ss_pred             C-cEEEEeCCCHHH-----HHHH-HHH--hCCC--------ceE-EECCccHHHHHhCCcccccCCccceEEEE-cCCEE
Confidence            4 999999875221     2332 111  1222        222 235567788999997521    2279999 99999


Q ss_pred             EEcccCCCCHHHHHHHHHHHHhh
Q 024610          239 RWQGFGMATPEELSSLLSCTSLL  261 (265)
Q Consensus       239 RWagsG~at~~E~e~L~k~~~~L  261 (265)
                      |+...|..++...+.+.+-+..+
T Consensus       130 ~~~~~g~~~~~~~~~~~~~l~~~  152 (159)
T 2a4v_A          130 KFKRVKISPEVSVNDAKKEVLEV  152 (159)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHHH
T ss_pred             EEEEccCCccccHHHHHHHHHHH
Confidence            99999987665544444443333

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=98.59  E-value=1.4e-07  Score=78.95  Aligned_cols=135  Identities=16%  Similarity=0.042  Sum_probs=77.8

Q ss_pred             cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCCe
Q 024610           95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKNV  164 (265)
Q Consensus        95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~v  164 (265)
                      +..+|+|.+.+++|+++++.+            ++||+.||.++         ++||.+|..          .+.+ .++
T Consensus        25 ~~~~p~f~l~~~~G~~~~l~~------------~~Gk~vll~F~---------atwC~~C~~~~~~l~~l~~~~~~-~~v   82 (190)
T 2vup_A           25 ASSIFDFEVLDADHKPYNLVQ------------HKGSPLLIYNV---------ASKCGYTKGGYETATTLYNKYKS-QGF   82 (190)
T ss_dssp             CCSGGGSCCBBTTSSBCCGGG------------GTTSCEEEEEE---------CSSSTTHHHHHHHHHHHHHHHGG-GTC
T ss_pred             CCcccCeEEEcCCCCEEEHHH------------cCCCEEEEEEe---------cCCCCccHHHHHHHHHHHHHHhc-CCe
Confidence            456899999999999987642            36899888665         899999852          2332 369


Q ss_pred             eEEEEecccc-----hhhccccchHHHHHHHHhcCCCCCccccceeEEEcCCh-HHHH-----HHhcccCCccc------
Q 024610          165 HLYEVSFIDS-----WLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDH-YYFR-----KELKILNLLTG------  227 (265)
Q Consensus       165 qiv~In~~e~-----~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~-~~iR-----e~Lgi~N~~vG------  227 (265)
                      ++|.|++++.     .....  ++.++...  .+++..  .+....  .-+.. ..+-     +..|+..  ++      
T Consensus        83 ~vv~vs~d~~~~~~~~~~~~--~~~~~~~~--~~~~~p--~l~~~D--~~~~~~~~~~~~l~~~~~~v~~--~P~i~~~~  152 (190)
T 2vup_A           83 TVLAFPCNQFGGQEPGNEEE--IKEFVCTK--FKAEFP--IMAKIN--VNGENAHPLYEYMKKTKPGILK--TKAIKWNF  152 (190)
T ss_dssp             EEEEEECCCSTTCCCSCHHH--HHHHHHHH--HCCCSC--BBCCCB--SSSTTBCHHHHHHHHHSCCGGG--CCSCCSTT
T ss_pred             EEEEEEcCccCCCCCCCHHH--HHHHHHHh--cCCCeE--EEeecc--cCcccccHHHHHHHhhcCCcCC--Cccccccc
Confidence            9999998731     01111  23321011  122210  010000  00010 0011     1224432  44      


Q ss_pred             EEEEEeCCCcEEEcccCCCCHHHHHHHHHHHHhhhcC
Q 024610          228 YIFLLDKFGRIRWQGFGMATPEELSSLLSCTSLLLEG  264 (265)
Q Consensus       228 YVyLVD~~grIRWagsG~at~~E~e~L~k~~~~Ll~e  264 (265)
                      .+||||++|+|++...|..++++++   +.++.||++
T Consensus       153 ~~~lid~~G~i~~~~~g~~~~~~l~---~~i~~ll~~  186 (190)
T 2vup_A          153 TSFLIDRDGVPVERFSPGASVKDIE---KKLIPLLES  186 (190)
T ss_dssp             CEEEECTTSCEEEEECTTCCHHHHH---HHHHHHHHC
T ss_pred             eEEEECCCCcEEEEECCCCCHHHHH---HHHHHHHhh
Confidence            8999999999999999998887654   444455543

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=98.58  E-value=3.1e-07  Score=77.24  Aligned_cols=122  Identities=11%  Similarity=0.035  Sum_probs=77.8

Q ss_pred             cccCCCceeeCC--CCC---eeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhc
Q 024610           95 AVKFPDLDVSYS--DRT---TLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFS  159 (265)
Q Consensus        95 AlyFPnl~~~~l--~G~---tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~  159 (265)
                      +..+|+|.+.++  +|+   ++++.+           .++||++||.++.        ++||.+|..          .+.
T Consensus         4 G~~~P~f~l~~~~~~G~~~~~v~l~~-----------~~~gk~vvl~F~~--------a~~C~~C~~~~~~l~~l~~~~~   64 (198)
T 1zof_A            4 TKLAPDFKAPAVLGNNEVDEHFELSK-----------NLGKNGVILFFWP--------KDFTFVCPTEIIAFDKRVKDFH   64 (198)
T ss_dssp             TSBCCCCEEEEECTTSCEEEEEETTT-----------SCCSSEEEEEECS--------CTTCSSCCTHHHHHHHTHHHHH
T ss_pred             CCcCCceEeecccCCCcccceEEHHH-----------HhCCCcEEEEEEC--------CCCCCchHHHHHHHHHHHHHHH
Confidence            456899999998  898   887542           1268988875541        689998752          232


Q ss_pred             cCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCC---cccEEEEEeCCC
Q 024610          160 DSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNL---LTGYIFLLDKFG  236 (265)
Q Consensus       160 ~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~---~vGYVyLVD~~g  236 (265)
                      + .++++|.|++++.-.     ++.+ ...+++......   ....+ ..+....+.+.+|+...   .++.+||||++|
T Consensus        65 ~-~~v~vv~Is~d~~~~-----~~~~-~~~~~~~~~~~~---~~~~~-~~d~~~~~~~~~~v~~~~g~~~P~~~lid~~G  133 (198)
T 1zof_A           65 E-KGFNVIGVSIDSEQV-----HFAW-KNTPVEKGGIGQ---VSFPM-VADITKSISRDYDVLFEEAIALRGAFLIDKNM  133 (198)
T ss_dssp             H-TTEEEEEEESSCHHH-----HHHH-HTSCGGGTCCCC---CSSCE-EECTTSHHHHHTTCEETTTEECEEEEEEETTT
T ss_pred             H-cCCEEEEEECCCHHH-----HHHH-HHhhhhcccccC---ceeEE-EECCchHHHHHhCCcccCCcccceEEEECCCC
Confidence            2 379999999876211     2222 111221111000   11222 23556778899998721   489999999999


Q ss_pred             cEEEcccCCC
Q 024610          237 RIRWQGFGMA  246 (265)
Q Consensus       237 rIRWagsG~a  246 (265)
                      +|++...|..
T Consensus       134 ~i~~~~~g~~  143 (198)
T 1zof_A          134 KVRHAVINDL  143 (198)
T ss_dssp             EEEEEEEESS
T ss_pred             EEEEEEecCC
Confidence            9999998864

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=98.57  E-value=3e-07  Score=76.89  Aligned_cols=138  Identities=14%  Similarity=0.094  Sum_probs=84.6

Q ss_pred             cccCCCceeeCC--CC--CeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhcc
Q 024610           95 AVKFPDLDVSYS--DR--TTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSD  160 (265)
Q Consensus        95 AlyFPnl~~~~l--~G--~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~  160 (265)
                      ...+|+|.+.+.  +|  +++++.+.           ++||+.||.++  .      .+||.+|..          .+.+
T Consensus         3 G~~aP~f~l~~~~~~G~~~~~~l~~~-----------~~gk~vvl~F~--~------a~~C~~C~~~~~~l~~~~~~~~~   63 (192)
T 2h01_A            3 QGQAPSFKAEAVFGDNTFGEVSLSDF-----------IGKKYVLLYFY--P------LDFTFVCPSEIIALDKALDSFKE   63 (192)
T ss_dssp             SSBCCCCEEEEECTTSCEEEEEGGGG-----------TTTCEEEEEEC--S------CSSCSSCCHHHHHHHHTHHHHHH
T ss_pred             CCcCCCcEeEeeecCCceeEEeHHHH-----------cCCCeEEEEEE--C------CCCCCCCHHHHHHHHHHHHHHHH
Confidence            346899999998  99  88876421           26898777443  1      689888752          2222


Q ss_pred             CCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccC---CcccEEEEEeCCCc
Q 024610          161 SKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILN---LLTGYIFLLDKFGR  237 (265)
Q Consensus       161 ~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N---~~vGYVyLVD~~gr  237 (265)
                       .++++|-|++++.-.     ++.+ ....++..+...   ....+ ..+....+-+.+|+..   ..++.+||||++|+
T Consensus        64 -~~v~vv~Is~d~~~~-----~~~~-~~~~~~~~~~~~---~~~~~-l~D~~~~~~~~~gv~~~~g~~~P~~~liD~~G~  132 (192)
T 2h01_A           64 -RNVELLGCSVDSKFT-----HLAW-KKTPLSQGGIGN---IKHTL-ISDISKSIARSYDVLFNESVALRAFVLIDKQGV  132 (192)
T ss_dssp             -TTEEEEEEESSCHHH-----HHHH-HTSCGGGTCCCS---CSSEE-EECTTSHHHHHTTCEETTTEECCEEEEECTTSB
T ss_pred             -CCCEEEEEEeCCHHH-----HHHH-HHhHHhhCCccC---CCcCe-EECCcHHHHHHhCCcCcCCceeeEEEEEcCCCE
Confidence             579999999975221     2222 111111111100   11222 2455677889999872   24789999999999


Q ss_pred             EEEcccCCC-CHHHHHHHHHHHHhhh
Q 024610          238 IRWQGFGMA-TPEELSSLLSCTSLLL  262 (265)
Q Consensus       238 IRWagsG~a-t~~E~e~L~k~~~~Ll  262 (265)
                      |++...|.. .+...+.+.+.++.|.
T Consensus       133 i~~~~~g~~~~~~~~~~l~~~l~~l~  158 (192)
T 2h01_A          133 VQHLLVNNLALGRSVDEILRLIDALQ  158 (192)
T ss_dssp             EEEEEEGGGSSGGGHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence            999998853 2334445555555554

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=98.55  E-value=1.2e-07  Score=74.63  Aligned_cols=114  Identities=11%  Similarity=0.065  Sum_probs=75.6

Q ss_pred             ccccCCCc-eeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCC
Q 024610           94 AAVKFPDL-DVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSK  162 (265)
Q Consensus        94 ~AlyFPnl-~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~  162 (265)
                      .+..+|++ .+.+++| ++++.+            ++||+.||.++         ++||.+|..          .+.+..
T Consensus         4 ~g~~~p~~~~l~~~~g-~~~l~~------------~~gk~vll~F~---------a~wC~~C~~~~~~l~~l~~~~~~~~   61 (144)
T 1o73_A            4 LAKYLPGATNLLSKSG-EVSLGS------------LVGKTVFLYFS---------ASWCPPCRGFTPVLAEFYEKHHVAK   61 (144)
T ss_dssp             GGGTSCTTCCBBCTTS-CBCSGG------------GTTCEEEEEEE---------CTTCHHHHHHHHHHHHHHHHHTTTT
T ss_pred             hhhhCccceEeecCCC-cCcHHH------------hCCCEEEEEEE---------CcCCHHHHHHHHHHHHHHHHhccCC
Confidence            45678997 9999999 887542            35898888665         789999862          233235


Q ss_pred             CeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEe-CCCcEEEc
Q 024610          163 NVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLD-KFGRIRWQ  241 (265)
Q Consensus       163 ~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD-~~grIRWa  241 (265)
                      +++++.|+++++.-  .  ++.+    +. ..++.     ...+...+....+.+.+++..  ++.+||+| ++|+|++.
T Consensus        62 ~~~vv~i~~d~~~~--~--~~~~----~~-~~~~~-----~~~~~~~~~~~~~~~~~~v~~--~Pt~~lid~~~G~i~~~  125 (144)
T 1o73_A           62 NFEVVLISWDENES--D--FHDY----YG-KMPWL-----ALPFDQRSTVSELGKTFGVES--IPTLITINADTGAIIGT  125 (144)
T ss_dssp             TEEEEEEECCSSHH--H--HHHH----HT-TCSSE-----ECCTTCHHHHHHHHHHHTCCS--SSEEEEEETTTCCEEES
T ss_pred             CEEEEEEeCCCCHH--H--HHHH----HH-hCCce-----EeeccchhHHHHHHHHcCCCC--CCEEEEEECCCCeEEec
Confidence            89999999986421  1  2222    22 22220     000000122467889999975  99999999 99999998


Q ss_pred             ccCC
Q 024610          242 GFGM  245 (265)
Q Consensus       242 gsG~  245 (265)
                      ..+.
T Consensus       126 ~~~~  129 (144)
T 1o73_A          126 QART  129 (144)
T ss_dssp             CHHH
T ss_pred             chhh
Confidence            7553

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=98.54  E-value=3.7e-07  Score=80.36  Aligned_cols=137  Identities=12%  Similarity=0.044  Sum_probs=82.6

Q ss_pred             ccccCCCceeeCC-C--CCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhcc
Q 024610           94 AAVKFPDLDVSYS-D--RTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSD  160 (265)
Q Consensus        94 ~AlyFPnl~~~~l-~--G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~  160 (265)
                      ....+|+|.+.++ +  |+++++.+            ++||+.||.+|  +      .+||.+|..          .|.+
T Consensus        50 vG~~aPdF~l~~~~d~~G~~vsLsd------------~~Gk~vvL~F~--~------~~~cp~C~~el~~l~~l~~~~~~  109 (240)
T 3qpm_A           50 ISKPAPQWEGTAVINGEFKELKLSD------------YRGKYLVFFFY--P------LDFTFVCPTEIIAFSDRVHEFRA  109 (240)
T ss_dssp             TTSBCCCCEEEEEETTEEEEEEGGG------------GTTSEEEEEEC--S------CTTSSHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCcEeeeeeCCCCcEEEHHH------------hCCCEEEEEEE--C------CCCCCchHHHHHHHHHHHHHHHH
Confidence            4557899997754 4  56887643            36898887554  1      499998862          2332


Q ss_pred             CCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCC----cccEEEEEeCCC
Q 024610          161 SKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNL----LTGYIFLLDKFG  236 (265)
Q Consensus       161 ~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~----~vGYVyLVD~~g  236 (265)
                       .++++|.||+++..-     ...+ ....++......   ....+ ..+....+-+++|+...    .++.+||||++|
T Consensus       110 -~gv~vv~Is~D~~~~-----~~~~-~~~~~~~~~~~~---~~fp~-l~D~~~~v~~~ygv~~~~~g~~~p~~flID~~G  178 (240)
T 3qpm_A          110 -INTEVVACSVDSQFT-----HLAW-IITPRKQGGLGP---MKIPL-LSDLTHQISKDYGVYLEDQGHTLRGLFIIDEKG  178 (240)
T ss_dssp             -TTEEEEEEESSCHHH-----HHHH-HHSCGGGTCCCS---CSSCE-EECTTSHHHHHTTCEETTTTEECEEEEEECTTS
T ss_pred             -CCCEEEEEECCCHHH-----HHHH-HHHHHhhcCCCC---CceeE-EeCchHHHHHHhCCccccCCCccceEEEEcCCC
Confidence             479999999876321     2222 222222111000   11222 24666789999999743    368899999999


Q ss_pred             cEEEcccCCCCH-HHHHHHHHHHHhh
Q 024610          237 RIRWQGFGMATP-EELSSLLSCTSLL  261 (265)
Q Consensus       237 rIRWagsG~at~-~E~e~L~k~~~~L  261 (265)
                      +||+...|..+. ..++.+.+.++.|
T Consensus       179 ~I~~~~~~~~~~~~~~~eil~~l~~l  204 (240)
T 3qpm_A          179 VLRQITMNDLPVGRSVDETLRLVQAF  204 (240)
T ss_dssp             BEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             eEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            999998775332 2234444444433

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=98.53  E-value=4.3e-07  Score=78.46  Aligned_cols=138  Identities=12%  Similarity=0.068  Sum_probs=83.4

Q ss_pred             ccccCCCceeeC---CCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhcc
Q 024610           94 AAVKFPDLDVSY---SDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSD  160 (265)
Q Consensus        94 ~AlyFPnl~~~~---l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~  160 (265)
                      ....+|+|.+.+   .+|+++++.+            ++||+.||.++  .      .+||.+|..          .|.+
T Consensus        29 ~G~~aP~f~l~~~~~~~g~~v~l~d------------~~Gk~vll~F~--p------a~~Cp~C~~~~~~l~~l~~~~~~   88 (220)
T 1zye_A           29 VTQHAPYFKGTAVVSGEFKEISLDD------------FKGKYLVLFFY--P------LDFTFVCPTEIIAFSDKASEFHD   88 (220)
T ss_dssp             TTSBCCCCEEEEECSSSEEEEEGGG------------GTTSEEEEEEC--S------CTTCSSSHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCcEEEeeeCCCCcEEEHHH------------hCCCeEEEEEE--C------CCCCCCCHHHHHHHHHHHHHHHH
Confidence            345689999875   4578877542            36898887444  2      789998762          2222


Q ss_pred             CCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCC----cccEEEEEeCCC
Q 024610          161 SKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNL----LTGYIFLLDKFG  236 (265)
Q Consensus       161 ~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~----~vGYVyLVD~~g  236 (265)
                       .++++|.|++++..-     ++.+ +...++..+...   ....+ ..+....+.+.+|+...    .++.+||||++|
T Consensus        89 -~~v~vv~Is~D~~~~-----~~~~-~~~~~~~~g~~~---~~fp~-l~D~~~~i~~~ygv~~~~~g~~~P~~~liD~~G  157 (220)
T 1zye_A           89 -VNCEVVAVSVDSHFS-----HLAW-INTPRKNGGLGH---MNIAL-LSDLTKQISRDYGVLLEGPGLALRGLFIIDPNG  157 (220)
T ss_dssp             -TTEEEEEEESSCHHH-----HHHH-HTSCGGGTCCCS---CSSEE-EECTTSHHHHHTTCEETTTTEECEEEEEECTTS
T ss_pred             -CCCEEEEEECCCHHH-----HHHH-HHHHHHhCCCcC---CceEE-EECCcHHHHHHhCCeecCCCcccceEEEECCCC
Confidence             579999999986321     2222 111122111100   11222 24666789999999732    588999999999


Q ss_pred             cEEEcccCCCCH-HHHHHHHHHHHhhh
Q 024610          237 RIRWQGFGMATP-EELSSLLSCTSLLL  262 (265)
Q Consensus       237 rIRWagsG~at~-~E~e~L~k~~~~Ll  262 (265)
                      +|||...|..+. ...+.+.+.++.|+
T Consensus       158 ~I~~~~~g~~~~~~~~~ell~~l~~l~  184 (220)
T 1zye_A          158 VIKHLSVNDLPVGRSVEETLRLVKAFQ  184 (220)
T ss_dssp             BEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             EEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence            999998886432 23333444444443

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=98.53  E-value=3.2e-07  Score=72.82  Aligned_cols=112  Identities=12%  Similarity=0.081  Sum_probs=75.4

Q ss_pred             cccCCC-ceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCC
Q 024610           95 AVKFPD-LDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKN  163 (265)
Q Consensus        95 AlyFPn-l~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~  163 (265)
                      ...+|+ +.+.+++| ++++.+            ++||+.||-++         ++||.+|..          .+.+..+
T Consensus         5 ~~~~P~~f~l~~~~g-~~~l~~------------~~gk~vll~F~---------a~wC~~C~~~~p~l~~l~~~~~~~~~   62 (146)
T 1o8x_A            5 DKYLPGIEKLRRGDG-EVEVKS------------LAGKLVFFYFS---------ASWCPPARGFTPQLIEFYDKFHESKN   62 (146)
T ss_dssp             GGTSTTCCEEEETTE-EEEGGG------------GTTCEEEEEEE---------CTTCHHHHHHHHHHHHHHHHHTTTTT
T ss_pred             HhhCCCceEEEcCCC-CCcHHH------------hCCCEEEEEEE---------ccCCHHHHHHHHHHHHHHHHhhhcCC
Confidence            456899 89999999 987653            35898888665         899999862          2333358


Q ss_pred             eeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEe-CCCcEEEcc
Q 024610          164 VHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLD-KFGRIRWQG  242 (265)
Q Consensus       164 vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD-~~grIRWag  242 (265)
                      ++++.|+++++.-  .  ++.+    + +..++.     ...+...+....+.+.+++..  ++.+||+| ++|+|++..
T Consensus        63 ~~vv~v~~d~~~~--~--~~~~----~-~~~~~~-----~~~~~~~d~~~~~~~~~~v~~--~Pt~~lid~~~G~i~~~~  126 (146)
T 1o8x_A           63 FEVVFCTWDEEED--G--FAGY----F-AKMPWL-----AVPFAQSEAVQKLSKHFNVES--IPTLIGVDADSGDVVTTR  126 (146)
T ss_dssp             EEEEEEECCCSHH--H--HHHH----H-TTCSSE-----ECCGGGHHHHHHHHHHTTCCS--SSEEEEEETTTCCEEESC
T ss_pred             eEEEEEeCCCCHH--H--HHHH----H-HHCCce-----eeccchhhHHHHHHHHhCCCC--CCEEEEEECCCCeEEEec
Confidence            9999999986421  1  2222    2 222321     111110123467889999975  99999999 999999987


Q ss_pred             cC
Q 024610          243 FG  244 (265)
Q Consensus       243 sG  244 (265)
                      .+
T Consensus       127 ~~  128 (146)
T 1o8x_A          127 AR  128 (146)
T ss_dssp             HH
T ss_pred             ch
Confidence            54

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=98.53  E-value=7.6e-07  Score=76.62  Aligned_cols=125  Identities=14%  Similarity=0.079  Sum_probs=78.6

Q ss_pred             cccccCCCceeeCC--CC--CeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hh
Q 024610           93 LAAVKFPDLDVSYS--DR--TTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AF  158 (265)
Q Consensus        93 ~~AlyFPnl~~~~l--~G--~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~  158 (265)
                      ......|+|.+.+.  +|  +++++.+.           ++||+.||.++  .      .+||.+|..          .|
T Consensus        22 ~~G~~aP~f~l~~~~~~G~~~~v~l~d~-----------~~gk~vvl~F~--p------a~~C~~C~~~~~~l~~l~~~~   82 (213)
T 2i81_A           22 YVGKEAPFFKAEAVFGDNSFGEVNLTQF-----------IGKKYVLLYFY--P------LDFTFVCPSEIIALDKALDAF   82 (213)
T ss_dssp             CBTSBCCCCEEEEECTTSCEEEEEGGGG-----------TTTCEEEEEEC--S------CTTSSHHHHHHHHHHHTHHHH
T ss_pred             cCCCcCCCeEeeccccCCceeEEeHHHH-----------cCCCeEEEEEE--c------CCCCCCCHHHHHHHHHHHHHH
Confidence            34556899999998  89  88875421           26898777443  2      789998862          22


Q ss_pred             ccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccC---CcccEEEEEeCC
Q 024610          159 SDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILN---LLTGYIFLLDKF  235 (265)
Q Consensus       159 ~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N---~~vGYVyLVD~~  235 (265)
                      .+ .++++|.|++++...     ++.+ ....++.-.-+.   ....+ ..+....+-+++|+..   ..++.+||||++
T Consensus        83 ~~-~~v~vv~Is~D~~~~-----~~~~-~~~~~~~~g~~~---~~fp~-l~D~~~~~~~~ygv~~~~g~~~p~~~lID~~  151 (213)
T 2i81_A           83 HE-RNVELLGCSVDSKYT-----HLAW-KKTPLAKGGIGN---IKHTL-LSDITKSISKDYNVLFDDSVSLRAFVLIDMN  151 (213)
T ss_dssp             HH-TTEEEEEEESSCHHH-----HHHH-HSSCGGGTCCCS---CSSEE-EECTTSHHHHHTTCEETTTEECEEEEEECTT
T ss_pred             HH-CCCEEEEEeCCCHHH-----HHHH-HHHHHhhCCccC---CCceE-EECCchHHHHHhCCccccCCcccEEEEECCC
Confidence            22 579999999975321     2222 111111101000   11222 2455678999999872   147889999999


Q ss_pred             CcEEEcccCCCC
Q 024610          236 GRIRWQGFGMAT  247 (265)
Q Consensus       236 grIRWagsG~at  247 (265)
                      |+|||...|..+
T Consensus       152 G~i~~~~~~~~~  163 (213)
T 2i81_A          152 GIVQHLLVNNLA  163 (213)
T ss_dssp             SBEEEEEEECTT
T ss_pred             CEEEEEEecCCC
Confidence            999999887643

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=98.52  E-value=4e-07  Score=75.46  Aligned_cols=125  Identities=15%  Similarity=0.031  Sum_probs=75.4

Q ss_pred             ccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCC
Q 024610           94 AAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKN  163 (265)
Q Consensus        94 ~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~  163 (265)
                      .+..+|+|.+++++|+++++.+            ++||+.||.++         .+||.+|..          .+.+ .+
T Consensus        23 ~g~~~p~f~l~~~~G~~~~l~~------------~~gk~vll~F~---------atwC~~C~~~~~~l~~l~~~~~~-~~   80 (183)
T 2obi_A           23 CARSMHEFSAKDIDGHMVNLDK------------YRGFVCIVTNV---------ASQCGKTEVNYTQLVDLHARYAE-CG   80 (183)
T ss_dssp             GCCSGGGCEEEBTTSCEEEGGG------------GTTSEEEEEEE---------CSSSTTHHHHHHHHHHHHHHHGG-GT
T ss_pred             ccCcccceEEEcCCCCEeeHHH------------cCCCEEEEEEe---------CCCCCCcHHHHHHHHHHHHHHhc-CC
Confidence            4456899999999999998653            36899888665         899999862          2222 36


Q ss_pred             eeEEEEeccc-----chhhccccchHHHHHHHHhcCCCCCccccceeEEE-cCCh----HHHHHHh-------ccc---C
Q 024610          164 VHLYEVSFID-----SWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYS-FGDH----YYFRKEL-------KIL---N  223 (265)
Q Consensus       164 vqiv~In~~e-----~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~-~g~~----~~iRe~L-------gi~---N  223 (265)
                      +++|.|++++     ......  ++.+    +.+ .+..      ..++. .+..    ..+-+.+       |+.   -
T Consensus        81 v~vv~vs~d~~~~~e~~~~~~--~~~~----~~~-~~~~------~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i  147 (183)
T 2obi_A           81 LRILAFPCNQFGKQEPGSNEE--IKEF----AAG-YNVK------FDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAI  147 (183)
T ss_dssp             EEEEEEECCCSTTCCCSCHHH--HHHH----HHT-TTCC------SEEBCCCCCSSTTSCHHHHHHHTSTTTCCSSSSSC
T ss_pred             eEEEEEECCCCCCCCCCCHHH--HHHH----HHH-cCCC------ceEEeeeccCCcchhHHHHHhhccCCCCCcccccc
Confidence            9999999863     101011  2232    222 1111      11111 0111    1122222       322   1


Q ss_pred             CcccEEEEEeCCCcEEEcccCCCCHHHHHH
Q 024610          224 LLTGYIFLLDKFGRIRWQGFGMATPEELSS  253 (265)
Q Consensus       224 ~~vGYVyLVD~~grIRWagsG~at~~E~e~  253 (265)
                      ..++.+||||++|+|++...|..++++++.
T Consensus       148 ~~~P~~~lid~~G~i~~~~~g~~~~~~l~~  177 (183)
T 2obi_A          148 KWNFTKFLIDKNGCVVKRYGPMEEPLVIEK  177 (183)
T ss_dssp             CSTTCEEEECTTSCEEEEECTTSCTHHHHT
T ss_pred             cccceEEEECCCCCEEEEeCCCCCHHHHHH
Confidence            235789999999999999999888877543

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=98.51  E-value=4.6e-07  Score=84.57  Aligned_cols=123  Identities=15%  Similarity=0.142  Sum_probs=84.2

Q ss_pred             ccccCCCce-----eeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hh
Q 024610           94 AAVKFPDLD-----VSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AF  158 (265)
Q Consensus        94 ~AlyFPnl~-----~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~  158 (265)
                      .....|+|.     +.+++|+++++.+            ++||+.||-+|         ++||.+|..          .+
T Consensus        53 vG~~aPdF~~~~~wL~d~dG~~vsLsd------------l~GK~vLl~F~---------atwC~~C~~~~p~L~~l~~~~  111 (352)
T 2hyx_A           53 SCGTAPDLKGITGWLNTPGNKPIDLKS------------LRGKVVLIDFW---------AYSCINCQRAIPHVVGWYQAY  111 (352)
T ss_dssp             CCCBCCCCCSCCEEESSGGGCCCCGGG------------GTTSEEEEEEE---------CTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCCCccccccccCCCCCCEEcHHH------------hCCCEEEEEEE---------CCCChhHHHHHHHHHHHHHHh
Confidence            445679998     7889999987542            36899888665         899999873          22


Q ss_pred             ccCCCeeEEEEecccchh---hccccchHHHHHHHHh-cCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeC
Q 024610          159 SDSKNVHLYEVSFIDSWL---LCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDK  234 (265)
Q Consensus       159 ~~~~~vqiv~In~~e~~l---k~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~  234 (265)
                      .+ .++++|.|++++.-.   ...  ++.+    +++ +++.        .+ ..+....+.+.+++.-  ++.+||||+
T Consensus       112 ~~-~~v~vi~Vs~d~~~~~d~~~~--~~~~----~~~~~l~f--------pv-~~D~~~~l~~~ygV~~--~Pt~~lID~  173 (352)
T 2hyx_A          112 KD-SGLAVIGVHTPEYAFEKVPGN--VAKG----AANLGISY--------PI-ALDNNYATWTNYRNRY--WPAEYLIDA  173 (352)
T ss_dssp             GG-GTEEEEEEECCSSGGGGCHHH--HHHH----HHHHTCCS--------CE-EECTTSHHHHHTTCCE--ESEEEEECT
T ss_pred             hc-CCeEEEEEECCcccccCCHHH--HHHH----HHHcCCCc--------cE-EeCCcHHHHHHcCCCc--cCEEEEEeC
Confidence            22 369999999853110   011  2332    222 2221        12 2466677889999874  899999999


Q ss_pred             CCcEEEcccCCCCHHHHHHHH
Q 024610          235 FGRIRWQGFGMATPEELSSLL  255 (265)
Q Consensus       235 ~grIRWagsG~at~~E~e~L~  255 (265)
                      +|+|++...|..+.++++...
T Consensus       174 ~G~Iv~~~~G~~~~~~l~~~I  194 (352)
T 2hyx_A          174 TGTVRHIKFGEGDYNVTETLV  194 (352)
T ss_dssp             TSBEEEEEESBCCHHHHHHHH
T ss_pred             CCeEEEEEcCCCCHHHHHHHH
Confidence            999999999998887765443

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=98.50  E-value=3.9e-07  Score=76.53  Aligned_cols=119  Identities=13%  Similarity=0.131  Sum_probs=79.0

Q ss_pred             cccccCCCceee-CCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhH-Hh---hcc------C
Q 024610           93 LAAVKFPDLDVS-YSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFF-EA---FSD------S  161 (265)
Q Consensus        93 ~~AlyFPnl~~~-~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~-e~---~~~------~  161 (265)
                      ......|+|.+. +.+|+++++.+           .++||..|| +|++       ++||.+|. +.   +.+      .
T Consensus        16 ~vG~~aPdf~l~~~~~g~~v~L~d-----------~~~gk~vvL-~f~p-------a~wcp~C~~~e~p~l~~~~~~~~~   76 (173)
T 3mng_A           16 KVGDAIPAVEVFEGEPGNKVNLAE-----------LFKGKKGVL-FGVP-------GAFTPGCSKTHLPGFVEQAEALKA   76 (173)
T ss_dssp             CTTCBCCCCEEECSSTTCEEEHHH-----------HTTTSEEEE-EECS-------CTTCHHHHHTHHHHHHHTHHHHHT
T ss_pred             CCCCCCCCeEeeeCCCCCEEEhHH-----------HhCCCcEEE-EEEe-------CCCCCCCCHHHHHHHHHHHHHHHh
Confidence            345678999999 99999998653           236886444 4555       89999998 22   211      2


Q ss_pred             CCeeEEE-EecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCC-----------cccEE
Q 024610          162 KNVHLYE-VSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNL-----------LTGYI  229 (265)
Q Consensus       162 ~~vqiv~-In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~-----------~vGYV  229 (265)
                      .++++|. |+.++-..     .+.+ ..  +.+++. +     ..+ ..|....+-+++|+...           ...++
T Consensus        77 ~gv~vv~~iS~D~~~~-----~~~f-~~--~~~~~~-~-----fp~-l~D~~~~va~~yGv~~~~~~~~~~g~~~~~r~t  141 (173)
T 3mng_A           77 KGVQVVACLSVNDAFV-----TGEW-GR--AHKAEG-K-----VRL-LADPTGAFGKETDLLLDDSLVSIFGNRRLKRFS  141 (173)
T ss_dssp             TTCCEEEEEESSCHHH-----HHHH-HH--HTTCTT-T-----CEE-EECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEE
T ss_pred             CCCEEEEEEcCCCHHH-----HHHH-HH--HhCCCC-c-----eEE-EECCChHHHHHhCCCcccccccccCCcceEEEE
Confidence            4799997 99876321     2222 11  112221 1     222 34667789999999754           35899


Q ss_pred             EEEeCCCcEEEcccCCC
Q 024610          230 FLLDKFGRIRWQGFGMA  246 (265)
Q Consensus       230 yLVD~~grIRWagsG~a  246 (265)
                      |||| +|+|||..-|..
T Consensus       142 fvID-dG~I~~~~v~~~  157 (173)
T 3mng_A          142 MVVQ-DGIVKALNVEPD  157 (173)
T ss_dssp             EEEE-TTEEEEEEECTT
T ss_pred             EEEE-CCEEEEEEEeCC
Confidence            9999 999999998864

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=98.49  E-value=5.2e-07  Score=78.62  Aligned_cols=135  Identities=10%  Similarity=0.049  Sum_probs=83.0

Q ss_pred             cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCCe
Q 024610           95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKNV  164 (265)
Q Consensus        95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~v  164 (265)
                      ...+|+|.+.+.+| ++++.+            ++||--+|.++|+       ++||.+|..          .|.+ .++
T Consensus         8 G~~aP~F~l~~~~G-~v~l~d------------~~Gk~~vvL~~~~-------a~~cp~C~~el~~l~~l~~~f~~-~~v   66 (224)
T 1prx_A            8 GDVAPNFEANTTVG-RIRFHD------------FLGDSWGILFSHP-------RDFTPVCTTELGRAAKLAPEFAK-RNV   66 (224)
T ss_dssp             TCBCCCCEEEETTE-EEEHHH------------HHTTSEEEEEEES-------CSSCHHHHHHHHHHHHHHHHHHT-TTE
T ss_pred             cCCCCCcEEecCCC-CEEHHH------------HcCCCeEEEEEEC-------CCCCCCcHHHHHHHHHHHHHHHH-CCC
Confidence            45689999999999 887643            2466223334555       889998862          2332 479


Q ss_pred             eEEEEecccchhhccccchHHHHHHHHhcCC----CCCccccceeEEEcCChHHHHHHhcccCC----------cccEEE
Q 024610          165 HLYEVSFIDSWLLCRSPIKRILLKIMRKSKD----AGENVLQRQIVYSFGDHYYFRKELKILNL----------LTGYIF  230 (265)
Q Consensus       165 qiv~In~~e~~lk~~~~lk~~~~~~lrk~~p----~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~----------~vGYVy  230 (265)
                      ++|.||+++...     .+.+ ...++....    .+    ....+ ..+....+-+++||...          .++.+|
T Consensus        67 ~vi~IS~D~~~~-----~~~~-~~~i~~~~~~~~~~~----~~fpi-l~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~f  135 (224)
T 1prx_A           67 KLIALSIDSVED-----HLAW-SKDINAYNSEEPTEK----LPFPI-IDDRNRELAILLGMLDPAEKDEKGMPVTARVVF  135 (224)
T ss_dssp             EEEEEESSCHHH-----HHHH-HHHHHHHTTSCCCSC----CSSCE-EECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEE
T ss_pred             EEEEEcCCCHHH-----HHHH-HHHHHHhhCcccccC----cCcce-eecCchHHHHHhCCCCcccccCCCccccceEEE
Confidence            999999976321     2222 233333211    11    11222 23556778899999632          468999


Q ss_pred             EEeCCCcEEEcccCCCC-HHHHHHHHHHHHhh
Q 024610          231 LLDKFGRIRWQGFGMAT-PEELSSLLSCTSLL  261 (265)
Q Consensus       231 LVD~~grIRWagsG~at-~~E~e~L~k~~~~L  261 (265)
                      |||++|+||+...|..+ +...+.+.+.++.|
T Consensus       136 iID~~G~I~~~~~~~~~~gr~~~eil~~i~~l  167 (224)
T 1prx_A          136 VFGPDKKLKLSILYPATTGRNFDEILRVVISL  167 (224)
T ss_dssp             EECTTSBEEEEEECCTTBCCCHHHHHHHHHHH
T ss_pred             EECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence            99999999999987643 22233344444444

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=98.47  E-value=1.2e-06  Score=72.92  Aligned_cols=123  Identities=17%  Similarity=0.071  Sum_probs=75.2

Q ss_pred             cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCCe
Q 024610           95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKNV  164 (265)
Q Consensus        95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~v  164 (265)
                      +..+|++.+.+++|+++++.+            ++||+.||.++         ++||.+|..          .+.+ .++
T Consensus        26 g~~~p~f~l~~~~G~~v~l~~------------~~Gk~vlv~F~---------atwC~~C~~~~~~l~~l~~~~~~-~~v   83 (185)
T 2gs3_A           26 ARSMHEFSAKDIDGHMVNLDK------------YRGFVCIVTNV---------ASQGGKTEVNYTQLVDLHARYAE-CGL   83 (185)
T ss_dssp             CCCGGGCEEEBTTSCEEEGGG------------GTTSEEEEEEE---------CSSSTTHHHHHHHHHHHHHHHGG-GTE
T ss_pred             CCCcCCceeEcCCCCEeeHHH------------cCCCEEEEEEe---------cCCCCchHHHHHHHHHHHHHhhc-CCe
Confidence            557999999999999998653            36899888555         899999862          2222 369


Q ss_pred             eEEEEeccc-----chhhccccchHHHHHHHHh-cCCCCCccccceeEEE-c---CC-hHHHHHHh-------ccc---C
Q 024610          165 HLYEVSFID-----SWLLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYS-F---GD-HYYFRKEL-------KIL---N  223 (265)
Q Consensus       165 qiv~In~~e-----~~lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~-~---g~-~~~iRe~L-------gi~---N  223 (265)
                      ++|.|++++     ......  ++.+    +++ +++        ..++. .   +. ...+-+.+       |+.   -
T Consensus        84 ~vv~is~d~~~~~~~~~~~~--~~~~----~~~~~~~--------~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i  149 (185)
T 2gs3_A           84 RILAFPCNQFGKQEPGSNEE--IKEF----AAGYNVK--------FDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAI  149 (185)
T ss_dssp             EEEEEECCTTTTCCCSCHHH--HHHH----HHHTTCC--------SEEBCCCBSSSTTBCHHHHHHTTSGGGCCSSSSSC
T ss_pred             EEEEEECcccCCCCCCCHHH--HHHH----HHHcCCC--------CeeeeeeccCChhhhHHHHHHHhhcccccccCCcc
Confidence            999999863     111111  2332    111 222        11110 0   11 01122222       332   1


Q ss_pred             CcccEEEEEeCCCcEEEcccCCCCHHHHHH
Q 024610          224 LLTGYIFLLDKFGRIRWQGFGMATPEELSS  253 (265)
Q Consensus       224 ~~vGYVyLVD~~grIRWagsG~at~~E~e~  253 (265)
                      ..++.+||||++|+|++...|..++++++.
T Consensus       150 ~~~P~~~lid~~G~i~~~~~g~~~~~~l~~  179 (185)
T 2gs3_A          150 KWNFTKFLIDKNGCVVKRYGPMEEPLVIEK  179 (185)
T ss_dssp             CSSCCEEEECTTSCEEEEECTTSCGGGGGG
T ss_pred             cccceEEEECCCCCEEEeeCCCCCHHHHHH
Confidence            225699999999999999999888877554

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=98.46  E-value=2.4e-06  Score=74.20  Aligned_cols=59  Identities=5%  Similarity=-0.045  Sum_probs=45.0

Q ss_pred             ccccccCCCceeeCCC-CCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH---------hhccC
Q 024610           92 ALAAVKFPDLDVSYSD-RTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE---------AFSDS  161 (265)
Q Consensus        92 a~~AlyFPnl~~~~l~-G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e---------~~~~~  161 (265)
                      +..+..+|+|.+.+++ |+++++.+            ++||+.||.++         +|||.||.+         .+.+ 
T Consensus        29 ~~~~~~~pdF~l~d~~~G~~v~Lsd------------~~GKvvll~Fw---------At~C~~c~e~p~L~~l~~~~~~-   86 (215)
T 2i3y_A           29 KDEKGTIYDYEAIALNKNEYVSFKQ------------YVGKHILFVNV---------ATYCGLTAQYPELNALQEELKP-   86 (215)
T ss_dssp             CCCCCCGGGCEEEBSSSSCEEEGGG------------GTTSEEEEEEE---------CSSSGGGGGHHHHHHHHHHHGG-
T ss_pred             ccccCCcCCcEeeeCCCCCEEcHHH------------hCCCEEEEEEe---------CCCCCChHhHHHHHHHHHHhcc-
Confidence            4556679999999999 99998653            47998777554         999999852         2332 


Q ss_pred             CCeeEEEEecc
Q 024610          162 KNVHLYEVSFI  172 (265)
Q Consensus       162 ~~vqiv~In~~  172 (265)
                      .++++|.|+..
T Consensus        87 ~g~~Vlgvs~d   97 (215)
T 2i3y_A           87 YGLVVLGFPCN   97 (215)
T ss_dssp             GTEEEEEEECC
T ss_pred             CCeEEEEEEcc
Confidence            36999999975

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=98.42  E-value=1.5e-07  Score=77.29  Aligned_cols=115  Identities=13%  Similarity=0.028  Sum_probs=76.4

Q ss_pred             ccccCCCc-eeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCC
Q 024610           94 AAVKFPDL-DVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSK  162 (265)
Q Consensus        94 ~AlyFPnl-~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~  162 (265)
                      .+..+|++ .+.+++| ++++.+            ++||+.||-++         ++||.+|.+          .+.+..
T Consensus        24 vG~~~P~f~~l~~~~g-~v~l~~------------~~gk~vll~F~---------a~wC~~C~~~~p~l~~l~~~~~~~~   81 (165)
T 3s9f_A           24 VAKHLGEALKLRKQAD-TADMDS------------LSGKTVFFYFS---------ASWCPPCRGFTPQLVEFYEKHHDSK   81 (165)
T ss_dssp             HHHHHHHTSCEEETTE-EECSGG------------GTTSEEEEEEE---------CTTCHHHHHHHHHHHHHHHHHTTTT
T ss_pred             hcccCCcceeeecCCC-cccHHH------------cCCCEEEEEEE---------CCcChhHHHHHHHHHHHHHHhccCC
Confidence            34457888 7899999 887542            36899888665         899999872          234445


Q ss_pred             CeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCC-CcEEEc
Q 024610          163 NVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKF-GRIRWQ  241 (265)
Q Consensus       163 ~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~-grIRWa  241 (265)
                      ++++|.|++++..-  .  ++.+    + +..++.     ...++..+....+.+.+++.-  ++.+||+|++ |+|++.
T Consensus        82 ~v~vv~v~~d~~~~--~--~~~~----~-~~~~~~-----~~~~~~~~~~~~l~~~~~v~~--~Pt~~lid~~~G~iv~~  145 (165)
T 3s9f_A           82 NFEIILASWDEEED--D--FNAY----Y-AKMPWL-----SIPFANRNIVEALTKKYSVES--IPTLIGLNADTGDTVTT  145 (165)
T ss_dssp             TEEEEEEECCCSHH--H--HHHH----H-TTCSSE-----ECCTTCHHHHHHHHHHTTCCS--SSEEEEEETTTCCEEES
T ss_pred             CeEEEEEecCCCHH--H--HHHH----H-HhCCCc-----ccccCchhHHHHHHHHcCCCC--CCEEEEEeCCCCEEEec
Confidence            89999999987531  1  2222    2 222321     011101112267899999975  9999999998 999998


Q ss_pred             ccCCC
Q 024610          242 GFGMA  246 (265)
Q Consensus       242 gsG~a  246 (265)
                      ..+..
T Consensus       146 ~~~~~  150 (165)
T 3s9f_A          146 RARHA  150 (165)
T ss_dssp             CHHHH
T ss_pred             ccHHH
Confidence            76543

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=98.39  E-value=1.4e-06  Score=75.70  Aligned_cols=121  Identities=13%  Similarity=0.137  Sum_probs=76.6

Q ss_pred             cccCCCceeeCC--CCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCC
Q 024610           95 AVKFPDLDVSYS--DRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSK  162 (265)
Q Consensus        95 AlyFPnl~~~~l--~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~  162 (265)
                      ...+|+|.+.+.  +| ++++.+            ++||--+|.++++       ++||-+|..          .|.+ .
T Consensus         6 G~~aP~F~l~~~~~~G-~v~l~d------------~~Gk~~vvL~f~~-------a~~cp~C~~el~~l~~l~~~f~~-~   64 (220)
T 1xcc_A            6 GATFPNFTAKASGIDG-DFELYK------------YIENSWAILFSHP-------NDFTPVCTTELAELGKMHEDFLK-L   64 (220)
T ss_dssp             TCBCCCCEECBTTCSS-CEEHHH------------HTTTSEEEEECCS-------CTTCHHHHHHHHHHHHTHHHHHT-T
T ss_pred             CCCCCCcEeecccCCC-cEeHHH------------HcCCCeEEEEEEC-------CCCCCCCHHHHHHHHHHHHHHHH-c
Confidence            456899999999  99 887542            3577223334556       899998862          2332 4


Q ss_pred             CeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCC----------cccEEEEE
Q 024610          163 NVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNL----------LTGYIFLL  232 (265)
Q Consensus       163 ~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~----------~vGYVyLV  232 (265)
                      ++++|.||+++...     .+.+ ...++..+....   ....+ ..+....+-+.+||...          .++.+|||
T Consensus        65 ~v~vi~vS~D~~~~-----~~~~-~~~i~~~~~~~~---~~fpi-l~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~flI  134 (220)
T 1xcc_A           65 NCKLIGFSCNSKES-----HDKW-IEDIKYYGKLNK---WEIPI-VCDESRELANKLKIMDEQEKDITGLPLTCRCLFFI  134 (220)
T ss_dssp             TEEEEEEESSCHHH-----HHHH-HHHHHHHHTCSC---CCCCE-EECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEE
T ss_pred             CCEEEEEeCCCHHH-----HHHH-HHHHHHHhcCCC---Cccee-EECchhHHHHHhCCCCcccccCCCCCcccceEEEE
Confidence            79999999976321     1222 222332101000   11223 23556778899999632          36799999


Q ss_pred             eCCCcEEEcccCCC
Q 024610          233 DKFGRIRWQGFGMA  246 (265)
Q Consensus       233 D~~grIRWagsG~a  246 (265)
                      |++|+||+...|..
T Consensus       135 D~~G~I~~~~~~~~  148 (220)
T 1xcc_A          135 SPEKKIKATVLYPA  148 (220)
T ss_dssp             CTTSBEEEEEEECT
T ss_pred             CCCCEEEEEEecCC
Confidence            99999999987654

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=98.37  E-value=4e-06  Score=72.16  Aligned_cols=58  Identities=7%  Similarity=-0.069  Sum_probs=42.1

Q ss_pred             cccccCCCceeeCCC-CCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH---------hhccCC
Q 024610           93 LAAVKFPDLDVSYSD-RTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE---------AFSDSK  162 (265)
Q Consensus        93 ~~AlyFPnl~~~~l~-G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e---------~~~~~~  162 (265)
                      ..+..+|+|.+.+++ |+++++.+            ++||+.||.++         +|||.||.+         .+.+ .
T Consensus        12 ~~~~~~pdF~l~d~~~G~~v~Ls~------------~kGKvvll~F~---------At~C~~c~e~p~L~~l~~~~~~-~   69 (207)
T 2r37_A           12 GISGTIYEYGALTIDGEEYIPFKQ------------YAGKYVLFVNV---------ASYGGLTGQYIELNALQEELAP-F   69 (207)
T ss_dssp             ---CCGGGCEEEBTTSSCEEEGGG------------GTTSEEEEEEE---------CSSSTTTTHHHHHHHHHHHHGG-G
T ss_pred             cccCccCCeEeeeCCCCCEEcHHH------------hCCCEEEEEEe---------CCCCCChHHHHHHHHHHHHhcc-C
Confidence            445568999999999 99998653            47998877554         899998832         2332 3


Q ss_pred             CeeEEEEecc
Q 024610          163 NVHLYEVSFI  172 (265)
Q Consensus       163 ~vqiv~In~~  172 (265)
                      ++++|-|+..
T Consensus        70 g~~vlgvs~d   79 (207)
T 2r37_A           70 GLVILGFPCN   79 (207)
T ss_dssp             TEEEEEEECC
T ss_pred             CEEEEEEECc
Confidence            6999999965

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=98.35  E-value=1.1e-06  Score=78.15  Aligned_cols=122  Identities=14%  Similarity=0.050  Sum_probs=76.3

Q ss_pred             ccccCCCceeeCC---CCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhH----------Hhhcc
Q 024610           94 AAVKFPDLDVSYS---DRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFF----------EAFSD  160 (265)
Q Consensus        94 ~AlyFPnl~~~~l---~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~----------e~~~~  160 (265)
                      ....+|+|.+.++   +|+++++.+            ++||+.||.+|  .      .+||.+|.          +.|.+
T Consensus        64 vG~~aPdF~l~~l~d~~G~~vsLsd------------~kGK~vvL~F~--~------a~~cp~C~~el~~l~~l~~~~~~  123 (254)
T 3tjj_A           64 ISKPAPYWEGTAVIDGEFKELKLTD------------YRGKYLVFFFY--P------LDFTFVCPTEIIAFGDRLEEFRS  123 (254)
T ss_dssp             TTSBCCCCEEEEEETTEEEEEEGGG------------GTTSEEEEEEC--S------CTTCSSCCHHHHHHHHTHHHHHT
T ss_pred             CCCCCCCcEeeeecCCCCcEEeHHH------------HCCCeEEEEEE--C------CCCCCchHHHHHHHHHHHHHHHH
Confidence            4557899997654   677887653            36898776443  2      78988775          23332


Q ss_pred             CCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCC----cccEEEEEeCCC
Q 024610          161 SKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNL----LTGYIFLLDKFG  236 (265)
Q Consensus       161 ~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~----~vGYVyLVD~~g  236 (265)
                       .++++|.||+++..-     ...+ +...++....+.   ....+ ..+....+-+++|+...    .++.+||||++|
T Consensus       124 -~gv~vv~IS~D~~~~-----~~~~-~~~~~~~~g~~~---~~fp~-l~D~~~~va~~ygv~~~~~g~~~p~tflID~~G  192 (254)
T 3tjj_A          124 -INTEVVACSVDSQFT-----HLAW-INTPRRQGGLGP---IRIPL-LSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKG  192 (254)
T ss_dssp             -TTEEEEEEESSCHHH-----HHHH-HTSCGGGTSCCS---CSSCE-EECTTSHHHHHHTCEETTTTEECEEEEEECTTS
T ss_pred             -cCCEEEEEcCCCHHH-----HHHH-HHHHHHhcCCcc---cccce-eeCcHHHHHHHcCCccccCCCccceEEEECCCC
Confidence             479999999876321     1222 111111111000   11222 24666789999999753    367899999999


Q ss_pred             cEEEcccCCC
Q 024610          237 RIRWQGFGMA  246 (265)
Q Consensus       237 rIRWagsG~a  246 (265)
                      +||+...|..
T Consensus       193 ~I~~~~~~~~  202 (254)
T 3tjj_A          193 ILRQITLNDL  202 (254)
T ss_dssp             BEEEEEEECT
T ss_pred             eEEEEEecCC
Confidence            9999987743

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=97.70  E-value=5.3e-08  Score=76.36  Aligned_cols=113  Identities=15%  Similarity=0.077  Sum_probs=73.0

Q ss_pred             cCCCceeeCCCCCeeeccCCCCCCccCccccCCCc-eEEEEEeeeccchHHHhhhcchhHHh----------hcc-CCCe
Q 024610           97 KFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPK-VSLVCLTFRASSQAMVDSWSSPFFEA----------FSD-SKNV  164 (265)
Q Consensus        97 yFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gK-vSIV~l~~~~~gq~~~~sw~~p~~e~----------~~~-~~~v  164 (265)
                      .+|++.+.+++|+++++.+           .++|| +.||-++         ++||.+|...          +.+ .+++
T Consensus         3 ~~p~~~l~~~~g~~~~l~~-----------~~~gk~~vll~F~---------a~wC~~C~~~~~~l~~~~~~~~~~~~~~   62 (143)
T 2lus_A            3 FIQGIKLVKKNRCEVNANE-----------ALKDKDIIGFYFS---------AHWCPPCRGFTPILADMYSELVDDSAPF   62 (143)
Confidence            4799999999999987543           13588 8887555         8999998631          211 2578


Q ss_pred             eEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccC
Q 024610          165 HLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFG  244 (265)
Q Consensus       165 qiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG  244 (265)
                      +++.|+++++.-  .  ++.+ +..  .+.++      ....+..+....+.+.+|+..  ++.+||+|++|+|++...+
T Consensus        63 ~v~~v~~d~~~~--~--~~~~-~~~--~~~~~------~~~~~~~~~~~~~~~~~~v~~--~P~~~lid~~G~i~~~~~~  127 (143)
T 2lus_A           63 EIIFVSSDRSED--D--MFQY-MME--SHGDW------LAIPYRSGPASNVTAKYGITG--IPALVIVKKDGTLISMNGR  127 (143)
Confidence            999999886421  1  2222 111  11221      111111233456778888864  8999999999999998533

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=98.35  E-value=2.2e-06  Score=69.97  Aligned_cols=116  Identities=12%  Similarity=0.107  Sum_probs=76.1

Q ss_pred             ccccCCCceee--CCCC--CeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhH-Hh----------h
Q 024610           94 AAVKFPDLDVS--YSDR--TTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFF-EA----------F  158 (265)
Q Consensus        94 ~AlyFPnl~~~--~l~G--~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~-e~----------~  158 (265)
                      .....|+|.+.  +.+|  +++++.+           .++||+.||.+|  .      .+||.+|. ..          +
T Consensus         6 ~G~~aP~f~l~~~~~~G~~~~~~l~~-----------~~~gk~vvl~f~--~------~~~c~~C~~~e~~~l~~~~~~~   66 (162)
T 1tp9_A            6 VGDVLPDGKLAYFDEQDQLQEVSVHS-----------LVAGKKVILFGV--P------GAFTPTCSLKHVPGFIEKAGEL   66 (162)
T ss_dssp             TTCBCCCCEEEEECTTSCEEEEESHH-----------HHTTSEEEEEEE--S------CTTCHHHHHTHHHHHHHHHHHH
T ss_pred             CCCCCCCeEEEeecCCCCceeEeHHH-----------HhCCCcEEEEEe--C------CCCCCCCCHHHHHHHHHHHHHH
Confidence            34568999875  8899  8887542           146898777544  2      68888887 32          2


Q ss_pred             ccCCCee-EEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCC---------cccE
Q 024610          159 SDSKNVH-LYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNL---------LTGY  228 (265)
Q Consensus       159 ~~~~~vq-iv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~---------~vGY  228 (265)
                      . ..+++ +|-||+++...     ++.+     .+..+.+    ....+ ..+....+-+++|+...         ..++
T Consensus        67 ~-~~~v~~vv~Is~d~~~~-----~~~~-----~~~~~~~----~~~~~-l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~  130 (162)
T 1tp9_A           67 K-SKGVTEILCISVNDPFV-----MKAW-----AKSYPEN----KHVKF-LADGSATYTHALGLELDLQEKGLGTRSRRF  130 (162)
T ss_dssp             H-HTTCCCEEEEESSCHHH-----HHHH-----HHTCTTC----SSEEE-EECTTSHHHHHTTCEEEETTTTSEEEECCE
T ss_pred             H-HCCCCEEEEEECCCHHH-----HHHH-----HHhcCCC----CCeEE-EECCCchHHHHcCcccccccCCCCccceeE
Confidence            2 24799 99999875321     2332     2222211    01222 24666789999999742         3689


Q ss_pred             EEEEeCCCcEEEcccCC
Q 024610          229 IFLLDKFGRIRWQGFGM  245 (265)
Q Consensus       229 VyLVD~~grIRWagsG~  245 (265)
                      +|||| +|+||+..-|.
T Consensus       131 ~~vid-~G~i~~~~~~~  146 (162)
T 1tp9_A          131 ALLVD-DLKVKAANIEG  146 (162)
T ss_dssp             EEEEE-TTEEEEEEECS
T ss_pred             EEEEE-CCEEEEEEeeC
Confidence            99999 99999999887

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=98.34  E-value=4.5e-07  Score=76.88  Aligned_cols=121  Identities=10%  Similarity=0.056  Sum_probs=80.0

Q ss_pred             ccccccCCCceeeCC--CC-CeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH-h---hc-----
Q 024610           92 ALAAVKFPDLDVSYS--DR-TTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE-A---FS-----  159 (265)
Q Consensus        92 a~~AlyFPnl~~~~l--~G-~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e-~---~~-----  159 (265)
                      -.....+|+|.+.++  +| +++++.+           .++||..|| +++|       .+||.+|.. .   +.     
T Consensus        26 l~vG~~aPdf~l~~~~~~G~~~v~L~d-----------~~~Gk~vvL-~f~~-------a~wcp~C~~~e~p~l~~~~~~   86 (184)
T 3uma_A           26 IAVGDKLPNATFKEKTADGPVEVTTEL-----------LFKGKRVVL-FAVP-------GAFTPTCSLNHLPGYLENRDA   86 (184)
T ss_dssp             CCTTCBCCCCEEEEEETTEEEEEEHHH-----------HHTTSEEEE-EEES-------CTTCHHHHHTHHHHHHHTHHH
T ss_pred             CCCCCCCCCcEeecccCCCceEEeHHH-----------HhCCCCEEE-EEEc-------CCCCCCcCHHHHHHHHHHHHH
Confidence            456678999999998  99 8887653           235885444 3455       889999875 2   21     


Q ss_pred             -cCCCee-EEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCC---------cccE
Q 024610          160 -DSKNVH-LYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNL---------LTGY  228 (265)
Q Consensus       160 -~~~~vq-iv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~---------~vGY  228 (265)
                       ...+++ +|.||.++-..     ++.+ ..  +.+++. .     ..+ ..|....+-+++|+...         ...+
T Consensus        87 ~~~~gv~~vv~Is~d~~~~-----~~~f-~~--~~~~~~-~-----fp~-l~D~~~~va~~yGv~~~~~~~g~g~~~~r~  151 (184)
T 3uma_A           87 ILARGVDDIAVVAVNDLHV-----MGAW-AT--HSGGMG-K-----IHF-LSDWNAAFTKAIGMEIDLSAGTLGIRSKRY  151 (184)
T ss_dssp             HHTTTCCEEEEEESSCHHH-----HHHH-HH--HHTCTT-T-----SEE-EECTTCHHHHHTTCEEEEGGGTCEEEECCE
T ss_pred             HHHcCCCEEEEEECCCHHH-----HHHH-HH--HhCCCC-c-----eEE-EEcCchHHHHHcCCceeccccCCcccceeE
Confidence             124788 99999976321     2232 11  113331 1     122 24667789999998753         2478


Q ss_pred             EEEEeCCCcEEEcccCCCC
Q 024610          229 IFLLDKFGRIRWQGFGMAT  247 (265)
Q Consensus       229 VyLVD~~grIRWagsG~at  247 (265)
                      +|||| +|+|||...|..+
T Consensus       152 tfiId-dG~I~~~~~~~~~  169 (184)
T 3uma_A          152 SMLVE-DGVVKALNIEESP  169 (184)
T ss_dssp             EEEEE-TTEEEEEEECSST
T ss_pred             EEEEC-CCEEEEEEEeCCC
Confidence            99998 9999999988643

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=98.34  E-value=1.2e-06  Score=77.15  Aligned_cols=134  Identities=13%  Similarity=0.118  Sum_probs=82.0

Q ss_pred             cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCc-eEEEEEeeeccchHHHhhhcchhHH----------hhccCCC
Q 024610           95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPK-VSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKN  163 (265)
Q Consensus        95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gK-vSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~  163 (265)
                      ...+|+|.+.+.+| ++++.+            ++|| ..||  +|+.      ++||-+|..          .|.+ .+
T Consensus         6 G~~aPdF~l~~~~G-~v~l~d------------~~Gk~~vvL--~f~p------a~~cpvC~~el~~l~~l~~ef~~-~~   63 (233)
T 2v2g_A            6 GEVFPNFEADSTIG-KLKFHD------------WLGNSWGVL--FSHP------RDFTPVSTTELGRVIQLEGDFKK-RG   63 (233)
T ss_dssp             TCBCCCCEEEETTC-CEEHHH------------HHCSSEEEE--EECS------CSSCHHHHHHHHHHHHTHHHHHH-TT
T ss_pred             CCCCCCcEEecCCC-CEEHHH------------HCCCCeEEE--EEEC------CCCCCCcHHHHHHHHHHHHHHHH-cC
Confidence            45689999999999 887643            2466 6655  3331      789988762          2332 47


Q ss_pred             eeEEEEecccchhhccccchHHHHHHHHh--cCCCCCccccceeEEEcCChHHHHHHhcccC----------CcccEEEE
Q 024610          164 VHLYEVSFIDSWLLCRSPIKRILLKIMRK--SKDAGENVLQRQIVYSFGDHYYFRKELKILN----------LLTGYIFL  231 (265)
Q Consensus       164 vqiv~In~~e~~lk~~~~lk~~~~~~lrk--~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N----------~~vGYVyL  231 (265)
                      +++|.||+++...     .+.+ ...++.  ..+.+    ....+ ..+....+-+++||..          ..++.+||
T Consensus        64 v~vigIS~D~~~~-----~~~~-~~~i~~~~~~~~~----~~fpi-l~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fi  132 (233)
T 2v2g_A           64 VKLIALSCDNVAD-----HKEW-SEDVKCLSGVKGD----MPYPI-IADETRELAVKLGMVDPDERTSTGMPLTCRAVFI  132 (233)
T ss_dssp             EEEEEEESSCHHH-----HHHH-HHHHHHHHTCCSS----CSSCE-EECTTCHHHHHTTCEEEEEECTTCCEEECEEEEE
T ss_pred             CEEEEEcCCCHHH-----HHHH-HHHHHHhhCcccC----CceEE-EECChHHHHHHhCCcCcccccCCCcccccceEEE
Confidence            9999999976321     2222 222222  22000    11222 2355677889999963          24789999


Q ss_pred             EeCCCcEEEcccCCCC-HHHHHHHHHHHHhh
Q 024610          232 LDKFGRIRWQGFGMAT-PEELSSLLSCTSLL  261 (265)
Q Consensus       232 VD~~grIRWagsG~at-~~E~e~L~k~~~~L  261 (265)
                      ||++|+||+...|..+ +...+.+.+.++.|
T Consensus       133 ID~~G~I~~~~~~~~~~gr~~~eilr~l~~L  163 (233)
T 2v2g_A          133 IGPDKKLKLSILYPATTGRNFSEILRVIDSL  163 (233)
T ss_dssp             ECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             ECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence            9999999999877543 22333344444444

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=98.29  E-value=5.1e-06  Score=74.02  Aligned_cols=132  Identities=14%  Similarity=0.179  Sum_probs=84.3

Q ss_pred             cccCCCceeeCCCCCeeeccCCCCCCccCccccC-CCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCC
Q 024610           95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAA-IPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKN  163 (265)
Q Consensus        95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l-~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~  163 (265)
                      ...+|+|.+.+.+| ++++|.          +.+ +||..|| ++|+       ++||-+|..          .|.+ .+
T Consensus         8 G~~aPdF~l~~~~G-~v~l~~----------d~l~~GK~vVL-~~fp-------a~~CpvC~tEl~~l~~l~~ef~~-~g   67 (249)
T 3a2v_A            8 GERFPEMEVTTDHG-VIKLPD----------HYVSQGKWFVL-FSHP-------ADFTPVCTTEFVSFARRYEDFQR-LG   67 (249)
T ss_dssp             TSBCCCEEEEETTE-EEEETH----------HHHTTTCEEEE-ECCS-------CTTCHHHHHHHHHHHHTHHHHHH-TT
T ss_pred             CCCCCCeEEEcCCC-CEecHH----------HHhhCCCEEEE-EEEc-------CCCCcChHHHHHHHHHHHHHHHh-CC
Confidence            45789999999999 676521          111 5886554 3555       899998862          2332 37


Q ss_pred             eeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCC-----cccEEEEEeCCCcE
Q 024610          164 VHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNL-----LTGYIFLLDKFGRI  238 (265)
Q Consensus       164 vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~-----~vGYVyLVD~~grI  238 (265)
                      +++|.||+++...     ... +...++.....+    ....+ ..+....+-+.+||...     .++.+||||++|+|
T Consensus        68 v~VI~VS~Ds~~~-----~~~-w~~~~~~~~~~~----i~fPi-l~D~~~~ia~~ygv~~~~~g~~~~p~~fIID~dG~I  136 (249)
T 3a2v_A           68 VDLIGLSVDSVFS-----HIK-WKEWIERHIGVR----IPFPI-IADPQGTVARRLGLLHAESATHTVRGVFIVDARGVI  136 (249)
T ss_dssp             EEEEEEESSCHHH-----HHH-HHHHHHHHTCCC----CCSCE-EECTTSHHHHHHTCCCTTCSSSCCEEEEEECTTSBE
T ss_pred             cEEEEEECCCHHH-----HHH-HHHHHHHhcCCC----CceeE-EECCchHHHHHhCCccccCCCcccceEEEECCCCeE
Confidence            9999999976321     122 222233322111    11222 23656789999999743     67899999999999


Q ss_pred             EEcccCCC----CHHHHHHHHHH
Q 024610          239 RWQGFGMA----TPEELSSLLSC  257 (265)
Q Consensus       239 RWagsG~a----t~~E~e~L~k~  257 (265)
                      |+...|..    +.+|+..+.+.
T Consensus       137 ~~~~~~~~~~gr~~~Ellr~I~a  159 (249)
T 3a2v_A          137 RTMLYYPMELGRLVDEILRIVKA  159 (249)
T ss_dssp             EEEEEECTTBCCCHHHHHHHHHH
T ss_pred             EEEEecCCcccchhHHHHHHHHH
Confidence            99998875    35665554444

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=98.29  E-value=1.7e-06  Score=71.84  Aligned_cols=117  Identities=12%  Similarity=0.094  Sum_probs=77.4

Q ss_pred             cccCCCceee-CCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH-hh---cc------CCC
Q 024610           95 AVKFPDLDVS-YSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE-AF---SD------SKN  163 (265)
Q Consensus        95 AlyFPnl~~~-~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e-~~---~~------~~~  163 (265)
                      ....|+|.+. +.+|+++++.+           .++||+.||.+ ++       ++||.+|.. ..   .+      ..+
T Consensus         6 G~~aP~f~l~~~~~G~~v~L~d-----------~~~Gk~vvl~f-~~-------a~wcp~C~~~e~p~l~~~~~~~~~~g   66 (167)
T 2wfc_A            6 GDKLPAVTVFGATPNDKVNMAE-----------LFAGKKGVLFA-VP-------GAFTPGSSKTHLPGYVEQAAAIHGKG   66 (167)
T ss_dssp             TCBCCCCEEESSSTTCEEEHHH-----------HTTTSEEEEEE-ES-------CTTCHHHHHTHHHHHHHTHHHHHHTT
T ss_pred             CCcCCCcEeecCCCCcEEeHHH-----------HhCCCcEEEEE-eC-------CCCCCCCCHHHHHHHHHHHHHHHHCC
Confidence            4568999999 99999988653           22688766643 34       789998875 32   11      247


Q ss_pred             e-eEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCC---------cccEEEEEe
Q 024610          164 V-HLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNL---------LTGYIFLLD  233 (265)
Q Consensus       164 v-qiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~---------~vGYVyLVD  233 (265)
                      + ++|-||+++...     ++.+ ..  +.+++. .     ..+ ..+....+-+++|+...         ..+++||| 
T Consensus        67 v~~vv~Is~d~~~~-----~~~~-~~--~~~~~~-~-----fp~-l~D~~~~~~~~~gv~~~~~~~~g~~~~~p~t~lI-  130 (167)
T 2wfc_A           67 VDIIACMAVNDSFV-----MDAW-GK--AHGADD-K-----VQM-LADPGGAFTKAVDMELDLSAVLGNVRSKRYSLVI-  130 (167)
T ss_dssp             CCEEEEEESSCHHH-----HHHH-HH--HTTCTT-T-----SEE-EECTTSHHHHHTTCEECCHHHHSSCEECCEEEEE-
T ss_pred             CCEEEEEeCCCHHH-----HHHH-HH--hcCCCc-c-----eEE-EECCCCcHHHHcCCccccccccCcccceEEEEEE-
Confidence            9 999999875321     2332 11  112321 1     222 24666788899998753         24899999 


Q ss_pred             CCCcEEEcccCCC
Q 024610          234 KFGRIRWQGFGMA  246 (265)
Q Consensus       234 ~~grIRWagsG~a  246 (265)
                      ++|+|||..-|..
T Consensus       131 ~~G~I~~~~~~~~  143 (167)
T 2wfc_A          131 EDGVVTKVNVEPD  143 (167)
T ss_dssp             ETTEEEEEEECTT
T ss_pred             eCCEEEEEEecCC
Confidence            8999999988763

>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}

Probab=98.23  E-value=1e-05  Score=74.43  Aligned_cols=130  Identities=12%  Similarity=0.134  Sum_probs=83.7

Q ss_pred             cCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH---hh--ccCCCeeEEEEec
Q 024610           97 KFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE---AF--SDSKNVHLYEVSF  171 (265)
Q Consensus        97 yFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e---~~--~~~~~vqiv~In~  171 (265)
                      .-|+|++.+.+|+++++.+            ++||+.||  +|+.      ..||-.|..   .|  ....+++++-||.
T Consensus         3 k~p~F~l~~~~G~~~~Lsd------------~~Gk~vvl--~F~p------~~~tp~C~~e~~~~~~~~~~~~~v~gis~   62 (322)
T 4eo3_A            3 RVKHFELLTDEGKTFTHVD------------LYGKYTIL--FFFP------KAGTSGSTREAVEFSRENFEKAQVVGISR   62 (322)
T ss_dssp             BCCCCEEEETTSCEEEGGG------------TTTSEEEE--EECS------STTSHHHHHHHHHHHHSCCTTEEEEEEES
T ss_pred             CCCCcEEECCCcCEEeHHH------------hCCCeEEE--EEEC------CCCCCCCHHHHHHHHHHhhCCCEEEEEeC
Confidence            3699999999999998753            47998666  4543      234433431   23  2235799999998


Q ss_pred             ccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCC--cccEEEEEeCCCcEEEcccCCCCHH
Q 024610          172 IDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNL--LTGYIFLLDKFGRIRWQGFGMATPE  249 (265)
Q Consensus       172 ~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~--~vGYVyLVD~~grIRWagsG~at~~  249 (265)
                      +.-..     .+.+ ..  +.+++        ..+ ..|....+-+++|+...  ...-+||||++|+||+.-.+-.++.
T Consensus        63 D~~~~-----~~~f-~~--~~~l~--------fp~-l~D~~~~v~~~ygv~~~~~~~r~tfiId~~G~i~~~~~~v~~~~  125 (322)
T 4eo3_A           63 DSVEA-----LKRF-KE--KNDLK--------VTL-LSDPEGILHEFFNVLENGKTVRSTFLIDRWGFVRKEWRRVKVEG  125 (322)
T ss_dssp             CCHHH-----HHHH-HH--HHTCC--------SEE-EECTTCHHHHHTTCEETTEECCEEEEECTTSBEEEEEESCCSTT
T ss_pred             CCHHH-----HHHH-HH--hhCCc--------eEE-EEcCchHHHHhcCCCCCCcCccEEEEECCCCEEEEEEeCCCccc
Confidence            64221     2332 11  11222        222 24667789999998652  2346899999999997766766666


Q ss_pred             HHHHHHHHHHhhhc
Q 024610          250 ELSSLLSCTSLLLE  263 (265)
Q Consensus       250 E~e~L~k~~~~Ll~  263 (265)
                      -.+-+...++.|++
T Consensus       126 h~~~~l~~~~~~~~  139 (322)
T 4eo3_A          126 HVQEVKEALDRLIE  139 (322)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHhhhch
Confidence            66666666666654

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=97.99  E-value=1.1e-05  Score=69.98  Aligned_cols=117  Identities=12%  Similarity=0.104  Sum_probs=75.3

Q ss_pred             cccCCCceeeCC-CCC--eeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhH-Hh---hc------cC
Q 024610           95 AVKFPDLDVSYS-DRT--TLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFF-EA---FS------DS  161 (265)
Q Consensus        95 AlyFPnl~~~~l-~G~--tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~-e~---~~------~~  161 (265)
                      +...|+|.+.++ +|+  ++++.+           .++||+.||.+| +       ++||.+|. ..   +.      ..
T Consensus         6 G~~aP~f~l~~~~~g~~~~v~l~~-----------~~~gk~vvl~f~-~-------a~~cp~C~~~e~~~l~~~~~~~~~   66 (241)
T 1nm3_A            6 GKKVPQVTFRTRQGDKWVDVTTSE-----------LFDNKTVIVFSL-P-------GAFTPTCSSSHLPRYNELAPVFKK   66 (241)
T ss_dssp             TSBCCCCEEEEEETTEEEEEEHHH-----------HHTTSEEEEEEE-S-------CSSCHHHHHTHHHHHHHHHHHHHH
T ss_pred             CCCCCCeEEEcccCCCceeecHHH-----------HhCCCeEEEEEe-C-------CCCCCCCCHHHHHHHHHHHHHHHH
Confidence            456899999987 777  776542           146898777443 2       78999987 32   11      12


Q ss_pred             CCe-eEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCC---------cccEEEE
Q 024610          162 KNV-HLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNL---------LTGYIFL  231 (265)
Q Consensus       162 ~~v-qiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~---------~vGYVyL  231 (265)
                      .++ ++|-||+++...     ++.+     .+..+..     ...+ ..+....+-+++|+...         ..+++||
T Consensus        67 ~~~~~vv~is~d~~~~-----~~~~-----~~~~~~~-----~~~~-l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~t~l  130 (241)
T 1nm3_A           67 YGVDDILVVSVNDTFV-----MNAW-----KEDEKSE-----NISF-IPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSML  130 (241)
T ss_dssp             TTCCEEEEEESSCHHH-----HHHH-----HHHTTCT-----TSEE-EECTTSHHHHHTTCEEECTTTTCCEEECCEEEE
T ss_pred             CCCCEEEEEEcCCHHH-----HHHH-----HHhcCCC-----ceEE-EECCCcHHHHHhCceeecccccCcccceeEEEE
Confidence            479 999999875321     2332     1212211     1222 24666778899998742         2368999


Q ss_pred             EeCCCcEEEcccCCCC
Q 024610          232 LDKFGRIRWQGFGMAT  247 (265)
Q Consensus       232 VD~~grIRWagsG~at  247 (265)
                      | ++|+||+...|...
T Consensus       131 i-~~G~i~~~~~~~~~  145 (241)
T 1nm3_A          131 V-KNGVVEKMFIEPNE  145 (241)
T ss_dssp             E-ETTEEEEEEECCSC
T ss_pred             E-ECCEEEEEEEeccC
Confidence            9 89999999988643

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=97.99  E-value=1.9e-05  Score=65.40  Aligned_cols=115  Identities=10%  Similarity=0.082  Sum_probs=73.0

Q ss_pred             ccCCCceeeCC----CC-----CeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh-h---cc--
Q 024610           96 VKFPDLDVSYS----DR-----TTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA-F---SD--  160 (265)
Q Consensus        96 lyFPnl~~~~l----~G-----~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~-~---~~--  160 (265)
                      ...|+|.+.++    +|     +++++.+           .++||..|| ++||       ++||.+|... .   .+  
T Consensus        11 ~~aP~f~l~~~~~~~~G~~~~~~~v~l~~-----------~~~gk~vvl-~~~~-------a~wcp~C~~eh~p~l~~~~   71 (171)
T 2pwj_A           11 SAASNVSLQKARTWDEGVESKFSTTPVND-----------IFKDKKVVI-FGLP-------GAYTGVCSSKHVPPYKHNI   71 (171)
T ss_dssp             CCSSSBCCCSCEECCCSSCTTCCCEEHHH-----------HHTTSEEEE-EECS-------CTTCTTHHHHTHHHHHHTH
T ss_pred             CcCCCeEEecccccccCCccCcceEEHHH-----------HhCCCCEEE-EEec-------CCCCCCCCHHHHHHHHHHH
Confidence            36899998887    47     7776542           225764333 3556       8999999754 2   11  


Q ss_pred             ----CCCee-EEEEecccchhhccccchHHHHHHHHh-cCCCCCccccceeEEEcCChHHHHHHhcccCCc---------
Q 024610          161 ----SKNVH-LYEVSFIDSWLLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGDHYYFRKELKILNLL---------  225 (265)
Q Consensus       161 ----~~~vq-iv~In~~e~~lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~---------  225 (265)
                          ..+++ +|-||+++...     ++.+    +++ +++.      ...+ ..+....+-+++|+....         
T Consensus        72 ~~~~~~g~~~vv~Is~d~~~~-----~~~~----~~~~~~~~------~fp~-l~D~~~~~~~~ygv~~~~~~~~~g~~~  135 (171)
T 2pwj_A           72 DKFKAKGVDSVICVAINDPYT-----VNAW----AEKIQAKD------AIEF-YGDFDGSFHKSLELTTDLSAGLLGIRS  135 (171)
T ss_dssp             HHHHHTTCSEEEEEESSCHHH-----HHHH----HHHTTCTT------TSEE-EECTTCHHHHHHTCEEECTTTTCCEEE
T ss_pred             HHHHHCCCCEEEEEeCCCHHH-----HHHH----HHHhCCCC------ceEE-EECCccHHHHHhCCccccccccCCccc
Confidence                14788 99999976321     2332    111 2210      1222 246677888999987532         


Q ss_pred             ccEEEEEeCCCcEEEcccCCC
Q 024610          226 TGYIFLLDKFGRIRWQGFGMA  246 (265)
Q Consensus       226 vGYVyLVD~~grIRWagsG~a  246 (265)
                      ..++|+|| +|+|||...|..
T Consensus       136 ~~~t~~I~-~G~I~~~~~~~~  155 (171)
T 2pwj_A          136 ERWSAYVV-DGKVKALNVEES  155 (171)
T ss_dssp             CCEEEEEE-TTEEEEEEECSS
T ss_pred             ceeEEEEE-CCEEEEEEeecC
Confidence            34899999 999999988864

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=97.94  E-value=4.9e-05  Score=58.55  Aligned_cols=42  Identities=14%  Similarity=0.153  Sum_probs=34.2

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS  256 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k  256 (265)
                      .++.+.+++..  ++.++++|++|++++...|..+.+++..+.+
T Consensus        72 ~~~~~~~~v~~--~Pt~~~~~~~G~~~~~~~G~~~~~~l~~~l~  113 (126)
T 2l57_A           72 IDLAYKYDANI--VPTTVFLDKEGNKFYVHQGLMRKNNIETILN  113 (126)
T ss_dssp             HHHHHHTTCCS--SSEEEEECTTCCEEEEEESCCCHHHHHHHHH
T ss_pred             HHHHHHcCCcc--eeEEEEECCCCCEEEEecCCCCHHHHHHHHH
Confidence            45667777764  9999999999999999999999888765543

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}

Probab=97.55  E-value=0.0003  Score=61.53  Aligned_cols=135  Identities=14%  Similarity=0.113  Sum_probs=78.1

Q ss_pred             cccccCCCceee---CCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhc
Q 024610           93 LAAVKFPDLDVS---YSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFS  159 (265)
Q Consensus        93 ~~AlyFPnl~~~---~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~  159 (265)
                      .-...-|+|++.   +-+|+++++.+            ++||..|+  +|..      ..||-.|..          .|.
T Consensus        24 ~VG~~APdF~l~a~~d~~~~~vsLsd------------~~GK~vVL--~FyP------~d~TpvCt~E~~~f~~~~~~f~   83 (216)
T 3sbc_A           24 QVQKQAPTFKKTAVVDGVFDEVSLDK------------YKGKYVVL--AFIP------LAFTFVSPTEIIAFSEAAKKFE   83 (216)
T ss_dssp             CTTSBCCCCCEEEEETTEEEEECGGG------------GTTSEEEE--EECS------CTTSSHHHHHHHHHHHHHHHHH
T ss_pred             hcCCcCCCCCCcceECCCCcEEehHH------------hCCCeEEE--EEEc------CCCCCcCchhhhHHHHhHHhhc
Confidence            345568999865   44556776542            47997665  4443      566666552          233


Q ss_pred             cCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccE----EEEEeCC
Q 024610          160 DSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGY----IFLLDKF  235 (265)
Q Consensus       160 ~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGY----VyLVD~~  235 (265)
                      + .+++++-||++.-..     -+.| ....+....-..   ....+ ..+...++-+++|+.+...|.    +||||++
T Consensus        84 ~-~g~~vigiS~Ds~~s-----h~aw-~~~~~~~~~~~~---l~fpl-lsD~~~~vak~YGv~~~~~g~~~R~tFiID~~  152 (216)
T 3sbc_A           84 E-QGAQVLFASTDSEYS-----LLAW-TNIPRKEGGLGP---INIPL-LADTNHSLSRDYGVLIEEEGVALRGLFIIDPK  152 (216)
T ss_dssp             H-TTEEEEEEESSCHHH-----HHHH-HTSCGGGTCCCS---CSSCE-EECTTSHHHHHHTCEETTTTEECEEEEEECTT
T ss_pred             c-CCceEEEeecCchhh-----HHHH-HHHHHHhCCccC---cccce-EeCCCCHHHHHcCCeeccCCceeeEEEEECCC
Confidence            2 479999999976322     1111 111111111000   12233 235678899999998776666    9999999


Q ss_pred             CcEEEcccCC----CCHHHHHHHHHHH
Q 024610          236 GRIRWQGFGM----ATPEELSSLLSCT  258 (265)
Q Consensus       236 grIRWagsG~----at~~E~e~L~k~~  258 (265)
                      |+|||.---.    ...+|+-...++.
T Consensus       153 G~Ir~~~v~~~~~grn~dEiLr~l~Al  179 (216)
T 3sbc_A          153 GVIRHITINDLPVGRNVDEALRLVEAF  179 (216)
T ss_dssp             SBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence            9999976332    2345544444443

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=97.55  E-value=0.00038  Score=53.97  Aligned_cols=46  Identities=7%  Similarity=0.077  Sum_probs=35.3

Q ss_pred             hHHHHHHhcccC-CcccEEEEEeCCCcEEEcccC-------CCCHHHHHHHHHH
Q 024610          212 HYYFRKELKILN-LLTGYIFLLDKFGRIRWQGFG-------MATPEELSSLLSC  257 (265)
Q Consensus       212 ~~~iRe~Lgi~N-~~vGYVyLVD~~grIRWagsG-------~at~~E~e~L~k~  257 (265)
                      ..++.+.+++.. ..++.++++|.+|++.+...|       ..+.++++.+.+-
T Consensus        77 ~~~l~~~~~v~~~~~~Pt~~~~d~~G~~~~~~~g~~~~~~~~~~~~~l~~~l~~  130 (133)
T 3fk8_A           77 NLELSQAYGDPIQDGIPAVVVVNSDGKVRYTTKGGELANARKMSDQGIYDFFAK  130 (133)
T ss_dssp             SHHHHHHTTCGGGGCSSEEEEECTTSCEEEECCSCTTTTGGGSCHHHHHHHHHH
T ss_pred             hHHHHHHhCCccCCccceEEEECCCCCEEEEecCCcccccccCCHHHHHHHHHH
Confidence            355777788721 249999999999999999999       6677777766544

>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A

Probab=97.54  E-value=0.00043  Score=60.61  Aligned_cols=119  Identities=14%  Similarity=0.145  Sum_probs=71.5

Q ss_pred             cccccCCCceee----CCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhH----------Hhh
Q 024610           93 LAAVKFPDLDVS----YSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFF----------EAF  158 (265)
Q Consensus        93 ~~AlyFPnl~~~----~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~----------e~~  158 (265)
                      .-...-|+|++.    +-+|+++++.+            ++||..|+  +|..      ..||-.|.          +.|
T Consensus        27 ~vG~~APdF~~~a~l~d~~g~~vsLsd------------~~GK~vVL--~FyP------~d~TpvCt~E~~~f~~~~~eF   86 (219)
T 3tue_A           27 KINSPAPSFEEVALMPNGSFKKISLSS------------YKGKWVVL--FFYP------LDFTFVCPTEVIAFSDSVSRF   86 (219)
T ss_dssp             CTTSBCCCCEEEEECTTSCEEEEEGGG------------GTTSEEEE--EECS------CTTCSSCCHHHHHHHTTHHHH
T ss_pred             ccCCcCCCCcccccccCCCCcEEehHH------------hCCCEEEE--EEec------ccCCCCCchhHhhHHHHHhhh
Confidence            445567999743    55777887653            46897555  4432      45555443          233


Q ss_pred             ccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccE----EEEEeC
Q 024610          159 SDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGY----IFLLDK  234 (265)
Q Consensus       159 ~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGY----VyLVD~  234 (265)
                      .+ -++++|-||.+.-..     -+.|..+ .+.......   ....+ ..+...++-+++|+.....|+    +||||+
T Consensus        87 ~~-~g~~vigiS~Ds~~s-----h~~w~~~-~~~~~~~~~---l~fpl-lsD~~~~va~~yGv~~~~~g~~~R~tFiIDp  155 (219)
T 3tue_A           87 NE-LNCEVLACSIDSEYA-----HLQWTLQ-DRKKGGLGT---MAIPI-LADKTKNIARSYGVLEESQGVAYRGLFIIDP  155 (219)
T ss_dssp             HT-TTEEEEEEESSCHHH-----HHHHHHS-CGGGTCCCS---CSSCE-EECTTSHHHHHTTCEETTTTEECEEEEEECT
T ss_pred             cc-CCcEEEEeeCCchhh-----HHHHhhh-hHHhcCccc---ccccc-ccCcccHHHHHcCCcccCCCeeEEEEEEECC
Confidence            33 379999999987332     1122111 111111100   11223 236678899999998776665    799999


Q ss_pred             CCcEEEcc
Q 024610          235 FGRIRWQG  242 (265)
Q Consensus       235 ~grIRWag  242 (265)
                      +|+|||.-
T Consensus       156 ~g~Ir~~~  163 (219)
T 3tue_A          156 HGMLRQIT  163 (219)
T ss_dssp             TSBEEEEE
T ss_pred             CCeEEEEE
Confidence            99999986

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=97.49  E-value=0.00017  Score=58.63  Aligned_cols=108  Identities=13%  Similarity=0.105  Sum_probs=65.7

Q ss_pred             CCCceEEEEEeeeccchHHHhhhcchhHHh---------hcc--CCCeeEEEEecccchhhccccchHHHHHHHHhcCCC
Q 024610          128 AIPKVSLVCLTFRASSQAMVDSWSSPFFEA---------FSD--SKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDA  196 (265)
Q Consensus       128 l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~---------~~~--~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~  196 (265)
                      .+||+.||-++         ++||.||...         +.+  ..++.++.|+++++.-...  ...        ....
T Consensus        45 ~~gk~vlv~F~---------A~WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~~~~~~~--~~~--------~~~~  105 (172)
T 3f9u_A           45 QHNKPVMLDFT---------GYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTPLTE--PVK--------IMEN  105 (172)
T ss_dssp             HTTCCEEEEEE---------CTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTCCCEEEE--EEE--------EEET
T ss_pred             HcCCeEEEEEE---------CCCCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCcccccch--hhh--------hhhc
Confidence            35899888666         9999999742         111  1268999999987531110  000        0000


Q ss_pred             CCccccceeEEEcCC-hHHH-HHHhcccCCcccEEEEEeCCCcEEEcccCCCC-HHHHHH-HHHHHHh
Q 024610          197 GENVLQRQIVYSFGD-HYYF-RKELKILNLLTGYIFLLDKFGRIRWQGFGMAT-PEELSS-LLSCTSL  260 (265)
Q Consensus       197 ~~~~l~~~~~y~~g~-~~~i-Re~Lgi~N~~vGYVyLVD~~grIRWagsG~at-~~E~e~-L~k~~~~  260 (265)
                      .    ....+..+++ ...+ .+.+++.  -+|.++|+|++|+|++...|+.+ ++++.. |.+.++.
T Consensus       106 ~----~~~~~~~~~~~~~~~~~~~~~v~--~~Pt~~lid~~G~~~~~~~G~~~~~~~l~~~l~~~l~~  167 (172)
T 3f9u_A          106 G----TERTLRTVGDKWSYLQRVKFGAN--AQPFYVLIDNEGNPLNKSYAYDEDISKYINFLQTGLEN  167 (172)
T ss_dssp             T----EEEEEEEHHHHHHHHHHHHHSCC--CSSEEEEECTTSCBSSCCBCSCCCHHHHHHHHHHHHHH
T ss_pred             c----hhhhhhhhhhhhhHHHHHHcCCC--CcceEEEECCCCCEEeeccCCCCCHHHHHHHHHHHHHH
Confidence            0    0011111222 1222 5778887  59999999999999999999998 777644 3444443

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=97.48  E-value=0.00029  Score=55.25  Aligned_cols=83  Identities=18%  Similarity=0.177  Sum_probs=59.1

Q ss_pred             CCceEEEEEeeeccchHHHhhhcchhHHhh----------ccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCC
Q 024610          129 IPKVSLVCLTFRASSQAMVDSWSSPFFEAF----------SDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGE  198 (265)
Q Consensus       129 ~gKvSIV~l~~~~~gq~~~~sw~~p~~e~~----------~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~  198 (265)
                      +||+.||-++         ++||.+|....          ...+++.++.|++.++.                       
T Consensus        30 ~~k~vlv~F~---------a~wC~~C~~~~~~~~~~~~l~~~~~~~~~~~vd~~~~~-----------------------   77 (134)
T 2fwh_A           30 KGKPVMLDLY---------ADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTAND-----------------------   77 (134)
T ss_dssp             TTSCEEEEEE---------CTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCC-----------------------
T ss_pred             cCCcEEEEEE---------CCCCHHHHHHHHHhcCCHHHHHHhcCcEEEEEeCCCCc-----------------------
Confidence            4788888666         89999997421          11234666666654310                       


Q ss_pred             ccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEE--EcccCCCCHHHHHHHHH
Q 024610          199 NVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIR--WQGFGMATPEELSSLLS  256 (265)
Q Consensus       199 ~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIR--WagsG~at~~E~e~L~k  256 (265)
                                 +...++.+.+|+.-  ++.++++|.+|+|.  +...|+.++++++.+.+
T Consensus        78 -----------~~~~~l~~~~~v~~--~Pt~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~  124 (134)
T 2fwh_A           78 -----------AQDVALLKHLNVLG--LPTILFFDGQGQEHPQARVTGFMDAETFSAHLR  124 (134)
T ss_dssp             -----------HHHHHHHHHTTCCS--SSEEEEECTTSCBCGGGCBCSCCCHHHHHHHHH
T ss_pred             -----------chHHHHHHHcCCCC--CCEEEEECCCCCEeeeeeeeeccCHHHHHHHHH
Confidence                       11245677788875  99999999999998  89999999999876654

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=97.26  E-value=0.0009  Score=51.34  Aligned_cols=43  Identities=14%  Similarity=0.234  Sum_probs=36.2

Q ss_pred             hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610          212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS  256 (265)
Q Consensus       212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k  256 (265)
                      ...+.+.+|+..  +|.++++|.+|++.+.-.|..+++++....+
T Consensus        75 ~~~~~~~~~v~~--~Pt~~~~d~~G~~~~~~~G~~~~~~l~~~l~  117 (130)
T 2kuc_A           75 GVELRKKYGVHA--YPTLLFINSSGEVVYRLVGAEDAPELLKKVK  117 (130)
T ss_dssp             HHHHHHHTTCCS--SCEEEEECTTSCEEEEEESCCCHHHHHHHHH
T ss_pred             hHHHHHHcCCCC--CCEEEEECCCCcEEEEecCCCCHHHHHHHHH
Confidence            567888999985  9999999999999999999998887665443

>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}

Probab=97.16  E-value=0.00061  Score=57.68  Aligned_cols=127  Identities=8%  Similarity=0.089  Sum_probs=72.4

Q ss_pred             ccccCCCceeeCCCC-CeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH-----------hhccC
Q 024610           94 AAVKFPDLDVSYSDR-TTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE-----------AFSDS  161 (265)
Q Consensus        94 ~AlyFPnl~~~~l~G-~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e-----------~~~~~  161 (265)
                      ....+|+++.+.+.+ ....-+.  .....++.+.++||..|+ +|++       ..||.+|..           .|++ 
T Consensus        12 ~~~~~p~~~~~~~~~~~~~~~~~--~~~~vsLsd~~~Gk~vVL-~fyP-------~~~tp~Ct~~El~~f~~~~~ef~~-   80 (176)
T 4f82_A           12 VGDALPDAQLFEFIDDAREGCTL--GPNACSVRDQVAGKRVVI-FGLP-------GAFTPTCSAQHVPGYVEHAEQLRA-   80 (176)
T ss_dssp             TTCBCCCCEEEEEECSCCTTCCS--EEEEEEHHHHHTTCEEEE-EEES-------CTTCHHHHHTHHHHHHHHHHHHHH-
T ss_pred             cCCcCCceEEEEecccccccccC--CceEEeHHHHhCCCeEEE-EEEc-------CCCCCCCCHHHHHHHHHHHHHHHh-
Confidence            356789988776644 1000000  000122333457886444 4556       778887754           2222 


Q ss_pred             CCe-eEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCC---------cccEEEE
Q 024610          162 KNV-HLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNL---------LTGYIFL  231 (265)
Q Consensus       162 ~~v-qiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~---------~vGYVyL  231 (265)
                      .++ ++|-||+++-..     .+.|. .  +.+++. +     ..+ ..+...++-+++|+...         ...++||
T Consensus        81 ~g~d~VigIS~D~~~~-----~~~f~-~--~~~l~~-~-----f~l-LsD~~~~va~ayGv~~~~~~~G~g~~s~R~tfI  145 (176)
T 4f82_A           81 AGIDEIWCVSVNDAFV-----MGAWG-R--DLHTAG-K-----VRM-MADGSAAFTHALGLTQDLSARGMGIRSLRYAMV  145 (176)
T ss_dssp             TTCCEEEEEESSCHHH-----HHHHH-H--HTTCTT-T-----SEE-EECTTCHHHHHHTCEEECGGGTCCEEECCEEEE
T ss_pred             CCCCEEEEEeCCCHHH-----HHHHH-H--HhCCCC-C-----ceE-EEcCchHHHHHhCCCccccccCCCcccccEEEE
Confidence            468 999999987332     23331 1  112221 1     222 23556789999998643         2468999


Q ss_pred             EeCCCcEEEcccCCCC
Q 024610          232 LDKFGRIRWQGFGMAT  247 (265)
Q Consensus       232 VD~~grIRWagsG~at  247 (265)
                      | ++|+|||...+.+.
T Consensus       146 I-~dG~I~~~~~~~~~  160 (176)
T 4f82_A          146 I-DGGVVKTLAVEAPG  160 (176)
T ss_dssp             E-ETTEEEEEEECCTT
T ss_pred             E-cCCEEEEEEEcCCC
Confidence            9 89999999997643

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=97.04  E-value=0.0014  Score=52.71  Aligned_cols=94  Identities=14%  Similarity=0.128  Sum_probs=60.8

Q ss_pred             CCceEEEEEeeeccchHHHhhhcchhHHh---h------cc--CCCeeEEEEecccchhhccccchHHHHHHHHhcCCCC
Q 024610          129 IPKVSLVCLTFRASSQAMVDSWSSPFFEA---F------SD--SKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAG  197 (265)
Q Consensus       129 ~gKvSIV~l~~~~~gq~~~~sw~~p~~e~---~------~~--~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~  197 (265)
                      +||+.||-++ .       ++||.||...   +      .+  ..++.+|.|++++..-                 ++. 
T Consensus        46 ~gk~vlv~F~-g-------a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~-----------------~~~-   99 (154)
T 2ju5_A           46 DHKPIGLFFT-G-------SDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNH-----------------QPE-   99 (154)
T ss_dssp             HCCCEEEEEE-C-------TTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCC-----------------CCH-
T ss_pred             CCCeEEEEEe-C-------CCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccC-----------------CCh-
Confidence            4888877553 1       6899998742   2      11  1357788887766320                 110 


Q ss_pred             CccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCC--CHHHHHHHHHHHHhhhc
Q 024610          198 ENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMA--TPEELSSLLSCTSLLLE  263 (265)
Q Consensus       198 ~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~a--t~~E~e~L~k~~~~Ll~  263 (265)
                             .  ..+...++.+.+++.-  +|.++|+|++|+|++.. |+.  +.+++   .+.++.+++
T Consensus       100 -------~--~~~~~~~l~~~~~v~~--~Pt~~~~d~~G~~~~~~-G~~~~~~~~l---~~~l~~~l~  152 (154)
T 2ju5_A          100 -------E--QRQKNQELKAQYKVTG--FPELVFIDAEGKQLARM-GFEPGGGAAY---VSKVKSALK  152 (154)
T ss_dssp             -------H--HHHHHHHHHHHTTCCS--SSEEEEECTTCCEEEEE-CCCTTCHHHH---HHHHHHHHT
T ss_pred             -------h--hHhhHHHHHHHcCCCC--CCEEEEEcCCCCEEEEe-cCCCCCHHHH---HHHHHHHHh
Confidence                   0  0133456788889885  99999999999999999 988  55554   334444544

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=97.04  E-value=0.0053  Score=47.26  Aligned_cols=40  Identities=13%  Similarity=0.148  Sum_probs=32.2

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL  255 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~  255 (265)
                      .++.+.+++.-  +|-+++++ +|++.+...|..+.+++....
T Consensus        86 ~~l~~~~~v~~--~Pt~~~~~-~G~~~~~~~G~~~~~~l~~~l  125 (128)
T 3ul3_B           86 ESLARKFSVKS--LPTIILLK-NKTMLARKDHFVSSNDLIALI  125 (128)
T ss_dssp             HHHHHHTTCCS--SSEEEEEE-TTEEEEEESSCCCHHHHHHHH
T ss_pred             HHHHHHcCCCC--cCEEEEEE-CCEEEEEecCCCCHHHHHHHH
Confidence            45667777774  88888885 999999999999999887653

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=96.94  E-value=0.0077  Score=44.76  Aligned_cols=77  Identities=16%  Similarity=0.125  Sum_probs=51.4

Q ss_pred             CCceEEEEEeeeccchHHHhhhcchhHHhh-------ccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccc
Q 024610          129 IPKVSLVCLTFRASSQAMVDSWSSPFFEAF-------SDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVL  201 (265)
Q Consensus       129 ~gKvSIV~l~~~~~gq~~~~sw~~p~~e~~-------~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l  201 (265)
                      .|++.||-++         ++||.+|....       ...+++.++.|++.+                            
T Consensus        23 ~~~~vlv~f~---------a~wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~----------------------------   65 (111)
T 2pu9_C           23 GDKPVVLDMF---------TQWCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQ----------------------------   65 (111)
T ss_dssp             TTSCEEEEEE---------CTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSS----------------------------
T ss_pred             CCCEEEEEEE---------CCcCHhHHHHCHHHHHHHHHCCCeEEEEEecCc----------------------------
Confidence            4788888666         89999987421       223445555555432                            


Q ss_pred             cceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610          202 QRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL  255 (265)
Q Consensus       202 ~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~  255 (265)
                               ...++.+.+++..  +|- ++++.+|++.+...|.. +++++.+.
T Consensus        66 ---------~~~~~~~~~~v~~--~Pt-~~~~~~G~~~~~~~G~~-~~~l~~~l  106 (111)
T 2pu9_C           66 ---------ENKTLAKELGIRV--VPT-FKILKENSVVGEVTGAK-YDKLLEAI  106 (111)
T ss_dssp             ---------TTHHHHHHHCCSB--SSE-EEEESSSSEEEEEESSC-HHHHHHHH
T ss_pred             ---------chHHHHHHcCCCe--eeE-EEEEeCCcEEEEEcCCC-HHHHHHHH
Confidence                     2345667778775  776 77889999999988984 66655443

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=96.94  E-value=0.0063  Score=45.66  Aligned_cols=42  Identities=21%  Similarity=0.282  Sum_probs=34.4

Q ss_pred             hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610          212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS  256 (265)
Q Consensus       212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k  256 (265)
                      ..++.+.+|+..  +|.++++ .+|++.+...|+.++++++.+..
T Consensus        61 ~~~l~~~~~v~~--~Pt~~~~-~~G~~v~~~~G~~~~~~l~~~~~  102 (110)
T 2l6c_A           61 RPELMKELGFER--VPTLVFI-RDGKVAKVFSGIMNPRELQALYA  102 (110)
T ss_dssp             CHHHHHHTTCCS--SCEEEEE-ESSSEEEEEESCCCHHHHHHHHH
T ss_pred             CHHHHHHcCCcc--cCEEEEE-ECCEEEEEEcCCCCHHHHHHHHH
Confidence            355677788875  8999998 69999999999999999876654

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=96.90  E-value=0.0054  Score=45.35  Aligned_cols=77  Identities=10%  Similarity=0.062  Sum_probs=50.4

Q ss_pred             CCceEEEEEeeeccchHHHhhhcchhHH------hh-ccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccc
Q 024610          129 IPKVSLVCLTFRASSQAMVDSWSSPFFE------AF-SDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVL  201 (265)
Q Consensus       129 ~gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~-~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l  201 (265)
                      .+++.||-++         ++||.||..      .+ ...+++.++.|+++++                           
T Consensus        17 ~~~~vlv~f~---------a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~~~~---------------------------   60 (105)
T 4euy_A           17 EQQLVLLFIK---------TENCGVCDVMLRKVNYVLENYNYVEKIEILLQDM---------------------------   60 (105)
T ss_dssp             CSSEEEEEEE---------ESSCHHHHHHHHHHHHHHHTCTTEEEEEEEECCC---------------------------
T ss_pred             cCCCEEEEEe---------CCCCcchHHHHHHHHHHHHHcCCceEEEEECCCC---------------------------
Confidence            5788888666         899999873      12 2335677777776552                           


Q ss_pred             cceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610          202 QRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL  255 (265)
Q Consensus       202 ~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~  255 (265)
                                 .++.+.+++..  +|-+++++ +|++.+...|..+.+++....
T Consensus        61 -----------~~l~~~~~v~~--~Pt~~~~~-~G~~~~~~~g~~~~~~l~~~l  100 (105)
T 4euy_A           61 -----------QEIAGRYAVFT--GPTVLLFY-NGKEILRESRFISLENLERTI  100 (105)
T ss_dssp             --------------------CC--CCEEEEEE-TTEEEEEEESSCCHHHHHHHH
T ss_pred             -----------HHHHHhcCCCC--CCEEEEEe-CCeEEEEEeCCcCHHHHHHHH
Confidence                       12334455554  78888886 999999999999988876554

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=96.86  E-value=0.013  Score=45.36  Aligned_cols=43  Identities=14%  Similarity=0.255  Sum_probs=33.2

Q ss_pred             CChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610          210 GDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL  255 (265)
Q Consensus       210 g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~  255 (265)
                      +...++.+.+|+.-  +|.++++|.+|+|. ...|..+.+++..+.
T Consensus        92 ~~~~~~~~~~~v~~--~Pt~~~~~~~g~~~-~~~G~~~~~~l~~~l  134 (141)
T 3hxs_A           92 DKEPELARDFGIQS--IPTIWFVPMKGEPQ-VNMGALSKEQLKGYI  134 (141)
T ss_dssp             TTCHHHHHHTTCCS--SSEEEEECSSSCCE-EEESCCCHHHHHHHH
T ss_pred             CCCHHHHHHcCCCC--cCEEEEEeCCCCEE-EEeCCCCHHHHHHHH
Confidence            33455677788875  99999999999987 778888888766543

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=96.84  E-value=0.0075  Score=48.15  Aligned_cols=80  Identities=9%  Similarity=0.038  Sum_probs=53.9

Q ss_pred             CceEEEEEeeeccchHHHhhhcchhHHh------h-ccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCcccc
Q 024610          130 PKVSLVCLTFRASSQAMVDSWSSPFFEA------F-SDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQ  202 (265)
Q Consensus       130 gKvSIV~l~~~~~gq~~~~sw~~p~~e~------~-~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~  202 (265)
                      |++.||-++         ++||.+|...      + ...+++.++.|++++                             
T Consensus        32 ~~~vvv~F~---------a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~~~-----------------------------   73 (153)
T 2wz9_A           32 KSLLVVHFW---------APWAPQCAQMNEVMAELAKELPQVSFVKLEAEG-----------------------------   73 (153)
T ss_dssp             TSCEEEEEE---------CTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTT-----------------------------
T ss_pred             CCeEEEEEE---------CCCCHhHHHHHHHHHHHHHHcCCeEEEEEECCC-----------------------------
Confidence            788888666         8999999742      1 222445555555433                             


Q ss_pred             ceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHHHHHhhhc
Q 024610          203 RQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLSCTSLLLE  263 (265)
Q Consensus       203 ~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k~~~~Ll~  263 (265)
                               ..++.+.+++..  +|.++++| +|++.+...|. ++++   |.+.++.++.
T Consensus        74 ---------~~~l~~~~~v~~--~Pt~~~~~-~G~~~~~~~G~-~~~~---l~~~i~~~l~  118 (153)
T 2wz9_A           74 ---------VPEVSEKYEISS--VPTFLFFK-NSQKIDRLDGA-HAPE---LTKKVQRHAS  118 (153)
T ss_dssp             ---------SHHHHHHTTCCS--SSEEEEEE-TTEEEEEEESS-CHHH---HHHHHHHHSC
T ss_pred             ---------CHHHHHHcCCCC--CCEEEEEE-CCEEEEEEeCC-CHHH---HHHHHHHHhc
Confidence                     345667778775  99999999 99999988885 5555   4444444443

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=96.79  E-value=0.0099  Score=44.48  Aligned_cols=40  Identities=10%  Similarity=0.123  Sum_probs=30.4

Q ss_pred             hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610          212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL  255 (265)
Q Consensus       212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~  255 (265)
                      ..++.+.+++..  +|.+++++ +|++.....|. ++++++.+.
T Consensus        66 ~~~l~~~~~v~~--~Pt~~~~~-~G~~~~~~~G~-~~~~l~~~i  105 (109)
T 3f3q_A           66 LGDVAQKNEVSA--MPTLLLFK-NGKEVAKVVGA-NPAAIKQAI  105 (109)
T ss_dssp             CHHHHHHTTCCS--SSEEEEEE-TTEEEEEEESS-CHHHHHHHH
T ss_pred             CHHHHHHcCCCc--cCEEEEEE-CCEEEEEEeCC-CHHHHHHHH
Confidence            355667778875  88888888 99999999998 666665443

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=96.73  E-value=0.01  Score=45.02  Aligned_cols=77  Identities=16%  Similarity=0.133  Sum_probs=50.9

Q ss_pred             CCceEEEEEeeeccchHHHhhhcchhHHhh-------ccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccc
Q 024610          129 IPKVSLVCLTFRASSQAMVDSWSSPFFEAF-------SDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVL  201 (265)
Q Consensus       129 ~gKvSIV~l~~~~~gq~~~~sw~~p~~e~~-------~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l  201 (265)
                      .|++.||-++         ++||.+|.+..       ...+++.++.|+..+                            
T Consensus        36 ~~~~~vv~f~---------a~wC~~C~~~~~~l~~~~~~~~~~~~~~vd~~~----------------------------   78 (124)
T 1faa_A           36 GDKPVVLDMF---------TQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQ----------------------------   78 (124)
T ss_dssp             TTSCEEEEEE---------CTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSS----------------------------
T ss_pred             CCCEEEEEEE---------CCcCHhHHHHhHHHHHHHHHCCCCEEEEEecCc----------------------------
Confidence            5788888666         89999997421       222345555555432                            


Q ss_pred             cceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610          202 QRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL  255 (265)
Q Consensus       202 ~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~  255 (265)
                               ...++.+.+|+..  +|- ++++.+|++.+...|.. ++++..+.
T Consensus        79 ---------~~~~~~~~~~v~~--~Pt-~~~~~~G~~~~~~~G~~-~~~l~~~i  119 (124)
T 1faa_A           79 ---------ENKTLAKELGIRV--VPT-FKILKENSVVGEVTGAK-YDKLLEAI  119 (124)
T ss_dssp             ---------TTHHHHHHHCCSS--SSE-EEEEETTEEEEEEESSC-HHHHHHHH
T ss_pred             ---------chHHHHHHcCCCe--eeE-EEEEeCCcEEEEEcCCC-HHHHHHHH
Confidence                     1345667778875  775 66678999999999986 66655443

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=96.72  E-value=0.0077  Score=47.10  Aligned_cols=42  Identities=7%  Similarity=0.007  Sum_probs=29.4

Q ss_pred             ChHHHHHHhcccCCcccEEEEE-eCCCc--EEEcccCCCCHHHHHHHH
Q 024610          211 DHYYFRKELKILNLLTGYIFLL-DKFGR--IRWQGFGMATPEELSSLL  255 (265)
Q Consensus       211 ~~~~iRe~Lgi~N~~vGYVyLV-D~~gr--IRWagsG~at~~E~e~L~  255 (265)
                      ...++.+.+++..  +|.++++ |.+|+  +.....|. +++++..+.
T Consensus        80 ~~~~l~~~~~v~~--~Pt~~~~~~~~g~g~~~~~~~G~-~~~~l~~~l  124 (133)
T 3cxg_A           80 IHPKLNDQHNIKA--LPTFEFYFNLNNEWVLVHTVEGA-NQNDIEKAF  124 (133)
T ss_dssp             TCHHHHHHTTCCS--SSEEEEEEEETTEEEEEEEEESC-CHHHHHHHH
T ss_pred             chHHHHHhcCCCC--CCEEEEEEecCCCeEEEEEEcCC-CHHHHHHHH
Confidence            3456777888875  8888888 44555  98888888 666655443

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=96.71  E-value=0.008  Score=46.62  Aligned_cols=76  Identities=17%  Similarity=0.206  Sum_probs=51.5

Q ss_pred             CCceEEEEEeeeccchHHHhhhcchhHHh-------hccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccc
Q 024610          129 IPKVSLVCLTFRASSQAMVDSWSSPFFEA-------FSDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVL  201 (265)
Q Consensus       129 ~gKvSIV~l~~~~~gq~~~~sw~~p~~e~-------~~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l  201 (265)
                      .||+.||-++         ++||.+|...       ....+++.++.|++++                            
T Consensus        45 ~~k~vvv~f~---------a~wC~~C~~~~~~l~~l~~~~~~v~~~~v~~~~----------------------------   87 (139)
T 3d22_A           45 DGKIVLANFS---------ARWCGPSRQIAPYYIELSENYPSLMFLVIDVDE----------------------------   87 (139)
T ss_dssp             HTCCEEEEEE---------CTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTT----------------------------
T ss_pred             cCCEEEEEEE---------CCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCcc----------------------------
Confidence            4788888665         8999998742       1223456666666543                            


Q ss_pred             cceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610          202 QRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL  255 (265)
Q Consensus       202 ~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~  255 (265)
                                ..++.+.+|+..  +|.++++ .+|++.+...|. ++++++.+.
T Consensus        88 ----------~~~~~~~~~v~~--~Pt~~~~-~~G~~~~~~~G~-~~~~l~~~l  127 (139)
T 3d22_A           88 ----------LSDFSASWEIKA--TPTFFFL-RDGQQVDKLVGA-NKPELHKKI  127 (139)
T ss_dssp             ----------SHHHHHHTTCCE--ESEEEEE-ETTEEEEEEESC-CHHHHHHHH
T ss_pred             ----------cHHHHHHcCCCc--ccEEEEE-cCCeEEEEEeCC-CHHHHHHHH
Confidence                      244566677764  7776666 799999999998 777765543

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=96.66  E-value=0.017  Score=43.72  Aligned_cols=76  Identities=20%  Similarity=0.193  Sum_probs=53.3

Q ss_pred             CCceEEEEEeeeccchHHHhhhcchhHHh------h-ccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccc
Q 024610          129 IPKVSLVCLTFRASSQAMVDSWSSPFFEA------F-SDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVL  201 (265)
Q Consensus       129 ~gKvSIV~l~~~~~gq~~~~sw~~p~~e~------~-~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l  201 (265)
                      .||+.||-++         ++||.+|...      + ...+++.++.|++++                            
T Consensus        30 ~~k~vlv~F~---------a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~----------------------------   72 (116)
T 3qfa_C           30 GDKLVVVDFS---------ATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDD----------------------------   72 (116)
T ss_dssp             TTSCEEEEEE---------CTTCHHHHHHHHHHHHHHTTCTTSEEEEEETTT----------------------------
T ss_pred             CCCEEEEEEE---------CCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC----------------------------
Confidence            5889998666         8999998742      1 223446666666543                            


Q ss_pred             cceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610          202 QRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL  255 (265)
Q Consensus       202 ~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~  255 (265)
                                ..++.+.+++..  +|-++++ .+|++.....|. ++++++.+.
T Consensus        73 ----------~~~l~~~~~v~~--~Pt~~~~-~~G~~~~~~~G~-~~~~l~~~l  112 (116)
T 3qfa_C           73 ----------CQDVASECEVKS--MPTFQFF-KKGQKVGEFSGA-NKEKLEATI  112 (116)
T ss_dssp             ----------THHHHHHTTCCS--SSEEEEE-SSSSEEEEEESC-CHHHHHHHH
T ss_pred             ----------CHHHHHHcCCcc--ccEEEEE-eCCeEEEEEcCC-CHHHHHHHH
Confidence                      244667777775  7777666 699999999998 887776554

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=96.58  E-value=0.018  Score=43.59  Aligned_cols=39  Identities=18%  Similarity=0.106  Sum_probs=27.5

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL  255 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~  255 (265)
                      .++-+.+||.-  +|-+++. .+|++...-.| ++++++..+.
T Consensus        63 ~~l~~~~~V~~--~PT~~~~-~~G~~v~~~~G-~~~~~l~~~i  101 (105)
T 3zzx_A           63 EDIAQDNQIAC--MPTFLFM-KNGQKLDSLSG-ANYDKLLELV  101 (105)
T ss_dssp             HHHHHHTTCCB--SSEEEEE-ETTEEEEEEES-CCHHHHHHHH
T ss_pred             HHHHHHcCCCe--ecEEEEE-ECCEEEEEEeC-cCHHHHHHHH
Confidence            45667777775  7755555 59999999899 5777765543

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=96.56  E-value=0.02  Score=41.62  Aligned_cols=40  Identities=10%  Similarity=0.173  Sum_probs=31.7

Q ss_pred             HHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610          214 YFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS  256 (265)
Q Consensus       214 ~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k  256 (265)
                      ++.+.+++..  +|.++++ .+|++.+...|..+.+++..+.+
T Consensus        65 ~~~~~~~v~~--~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~  104 (107)
T 2i4a_A           65 ETPNAYQVRS--IPTLMLV-RDGKVIDKKVGALPKSQLKAWVE  104 (107)
T ss_dssp             HHHHHTTCCS--SSEEEEE-ETTEEEEEEESCCCHHHHHHHHH
T ss_pred             HHHHhcCCCc--cCEEEEE-eCCEEEEEecCCCCHHHHHHHHH
Confidence            4556677775  8888888 79999999999999888766543

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=96.52  E-value=0.02  Score=44.00  Aligned_cols=38  Identities=26%  Similarity=0.240  Sum_probs=26.7

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSL  254 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L  254 (265)
                      .++.+.+++..  +|-++++ .+|++.+...| +++++++.+
T Consensus        81 ~~l~~~~~v~~--~Pt~~~~-~~G~~~~~~~G-~~~~~l~~~  118 (124)
T 1xfl_A           81 KSVASDWAIQA--MPTFMFL-KEGKILDKVVG-AKKDELQST  118 (124)
T ss_dssp             HHHHHHTTCCS--SSEEEEE-ETTEEEEEEES-CCHHHHHHH
T ss_pred             HHHHHHcCCCc--cCEEEEE-ECCEEEEEEeC-CCHHHHHHH
Confidence            45667777775  7765544 79999999899 477665544

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=96.52  E-value=0.019  Score=42.76  Aligned_cols=39  Identities=15%  Similarity=0.060  Sum_probs=27.7

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL  255 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~  255 (265)
                      .++.+.+++..  +|-+++. .+|++.+...|. ++++++.+.
T Consensus        69 ~~~~~~~~v~~--~Pt~~~~-~~G~~~~~~~G~-~~~~l~~~l  107 (112)
T 1syr_A           69 SEVTEKENITS--MPTFKVY-KNGSSVDTLLGA-NDSALKQLI  107 (112)
T ss_dssp             HHHHHHTTCCS--SSEEEEE-ETTEEEEEEESC-CHHHHHHHH
T ss_pred             HHHHHHcCCCc--ccEEEEE-ECCcEEEEEeCC-CHHHHHHHH
Confidence            34566777765  7765444 599999999998 877766544

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=96.48  E-value=0.026  Score=40.96  Aligned_cols=41  Identities=12%  Similarity=0.176  Sum_probs=32.4

Q ss_pred             hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610          212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL  255 (265)
Q Consensus       212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~  255 (265)
                      ..++.+.+++..  +|-+++++ +|++.+...|..+.+++....
T Consensus        62 ~~~~~~~~~v~~--~Pt~~~~~-~G~~~~~~~g~~~~~~l~~~l  102 (106)
T 3die_A           62 NPSTAAKYEVMS--IPTLIVFK-DGQPVDKVVGFQPKENLAEVL  102 (106)
T ss_dssp             CHHHHHHTTCCS--BSEEEEEE-TTEEEEEEESCCCHHHHHHHH
T ss_pred             CHHHHHhCCCcc--cCEEEEEe-CCeEEEEEeCCCCHHHHHHHH
Confidence            345667777875  88888887 999999999999988876654

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=96.48  E-value=0.028  Score=43.65  Aligned_cols=42  Identities=10%  Similarity=0.112  Sum_probs=33.1

Q ss_pred             hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610          212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS  256 (265)
Q Consensus       212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k  256 (265)
                      ..++.+.+++..  ++-++++|.+|++. ...|..+.++++.+.+
T Consensus        81 ~~~l~~~~~v~~--~Pt~~~~~~~G~~~-~~~G~~~~~~l~~~l~  122 (136)
T 2l5l_A           81 EQELAGAFGIRS--IPSILFIPMEGKPE-MAQGAMPKASFKKAID  122 (136)
T ss_dssp             CHHHHHHTTCCS--SCEEEEECSSSCCE-EEESCCCHHHHHHHHH
T ss_pred             CHHHHHHcCCCC--CCEEEEECCCCcEE-EEeCCCCHHHHHHHHH
Confidence            345677788875  99999999999997 5688888888766554

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=96.39  E-value=0.031  Score=40.35  Aligned_cols=39  Identities=10%  Similarity=0.006  Sum_probs=28.5

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL  255 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~  255 (265)
                      .++.+.+++..  +|.+++.+ +|++.+...| .++++++.+.
T Consensus        62 ~~~~~~~~v~~--~Pt~~~~~-~g~~~~~~~G-~~~~~l~~~l  100 (104)
T 2vim_A           62 EEAAAKYSVTA--MPTFVFIK-DGKEVDRFSG-ANETKLRETI  100 (104)
T ss_dssp             HHHHHHTTCCS--SSEEEEEE-TTEEEEEEES-SCHHHHHHHH
T ss_pred             HHHHHHcCCcc--ccEEEEEe-CCcEEEEEeC-CCHHHHHHHH
Confidence            45667778775  88776666 9999999999 5777655443

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=96.38  E-value=0.026  Score=42.47  Aligned_cols=45  Identities=16%  Similarity=0.155  Sum_probs=30.0

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHHHHHhhhcC
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLSCTSLLLEG  264 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k~~~~Ll~e  264 (265)
                      .++.+.+|+..  +|-++ ++.+|++.+...|.. ++++..+   ++.++..
T Consensus        77 ~~~~~~~~v~~--~Pt~~-~~~~G~~~~~~~G~~-~~~l~~~---l~~~l~~  121 (122)
T 2vlu_A           77 KPIAEQFSVEA--MPTFL-FMKEGDVKDRVVGAI-KEELTAK---VGLHAAA  121 (122)
T ss_dssp             HHHHHHTTCCS--SSEEE-EEETTEEEEEEESSC-HHHHHHH---HHHHHSC
T ss_pred             HHHHHHcCCCc--ccEEE-EEeCCEEEEEEeCcC-HHHHHHH---HHHHhcc
Confidence            45667777775  77544 447999999999988 6665543   4444443

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=96.37  E-value=0.03  Score=41.78  Aligned_cols=39  Identities=18%  Similarity=0.266  Sum_probs=31.6

Q ss_pred             HHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610          214 YFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL  255 (265)
Q Consensus       214 ~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~  255 (265)
                      ++.+.+++..  +|-++++ .+|++.+...|..+.+++..+.
T Consensus        62 ~l~~~~~v~~--~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l  100 (112)
T 2voc_A           62 ETAGKYGVMS--IPTLLVL-KDGEVVETSVGFKPKEALQELV  100 (112)
T ss_dssp             SHHHHTTCCS--BSEEEEE-ETTEEEEEEESCCCHHHHHHHH
T ss_pred             HHHHHcCCCc--ccEEEEE-eCCEEEEEEeCCCCHHHHHHHH
Confidence            3556677775  8899999 7999999999999998876654

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=96.37  E-value=0.02  Score=45.79  Aligned_cols=79  Identities=14%  Similarity=0.097  Sum_probs=54.0

Q ss_pred             CCceEEEEEeeeccchHHHhhhcchhHHh------h-ccCCC-eeEEEEecccchhhccccchHHHHHHHHhcCCCCCcc
Q 024610          129 IPKVSLVCLTFRASSQAMVDSWSSPFFEA------F-SDSKN-VHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENV  200 (265)
Q Consensus       129 ~gKvSIV~l~~~~~gq~~~~sw~~p~~e~------~-~~~~~-vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~  200 (265)
                      .|++.||-++         ++||.||...      + ...++ +.++.|++++                           
T Consensus        22 ~~k~vlv~F~---------a~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~---------------------------   65 (149)
T 3gix_A           22 AEKVLVLRFG---------RDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQ---------------------------   65 (149)
T ss_dssp             CSSEEEEEEE---------CTTSHHHHHHHHHHHHHHTTTTTTEEEEEEETTT---------------------------
T ss_pred             CCCEEEEEEE---------CCCCHHHHHHHHHHHHHHHHccCceEEEEEECCc---------------------------
Confidence            3788888766         9999999731      2 22233 6666666543                           


Q ss_pred             ccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEE---------EcccC-CCCHHHHHHHHHH
Q 024610          201 LQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIR---------WQGFG-MATPEELSSLLSC  257 (265)
Q Consensus       201 l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIR---------WagsG-~at~~E~e~L~k~  257 (265)
                                 ..++.+.++|.-  +|.++ ++.+|++.         ..-.| ..+.+|+..+.+.
T Consensus        66 -----------~~~l~~~~~v~~--~Pt~~-~~~~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~  118 (149)
T 3gix_A           66 -----------TAVYTQYFDISY--IPSTV-FFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEV  118 (149)
T ss_dssp             -----------CCHHHHHTTCCS--SSEEE-EEETTEEEEEECSSSCCSCEESCCSSHHHHHHHHHH
T ss_pred             -----------CHHHHHHcCCCc--cCeEE-EEECCeEEEeecCCCCCCeEeeecCCHHHHHHHHHH
Confidence                       233556667764  88888 67799999         88888 8888877655543

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=96.36  E-value=0.011  Score=46.19  Aligned_cols=78  Identities=12%  Similarity=-0.072  Sum_probs=52.5

Q ss_pred             hhhcchhHH------hhccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcc
Q 024610          148 DSWSSPFFE------AFSDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKI  221 (265)
Q Consensus       148 ~sw~~p~~e------~~~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi  221 (265)
                      ++||.||..      .+.+.-++.++.|++.+..-.      .                       ..+...++.+.+|+
T Consensus        40 a~wC~~C~~~~p~l~~l~~~~~v~~~~vd~~~~~~~------~-----------------------~~d~~~~l~~~~~v   90 (135)
T 3emx_A           40 SKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGE------R-----------------------ELSAARLEMNKAGV   90 (135)
T ss_dssp             ETTCHHHHHHHHHHHHHHTTCCSCEEEEEECTTCCH------H-----------------------HHHHHHHHHHHHTC
T ss_pred             CCcCHhhhHhChhHHHHHHHCCCEEEEEECCCchhh------h-----------------------hhhhhHHHHHHcCC
Confidence            899999873      233322388999988653110      0                       01223567788888


Q ss_pred             cCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHHH
Q 024610          222 LNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLSC  257 (265)
Q Consensus       222 ~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k~  257 (265)
                      .-  +| +++++.+|++.+...|+.++++++.+.+-
T Consensus        91 ~~--~P-t~~~~~~G~~v~~~~G~~~~~~~~~~i~~  123 (135)
T 3emx_A           91 EG--TP-TLVFYKEGRIVDKLVGATPWSLKVEKARE  123 (135)
T ss_dssp             CS--SS-EEEEEETTEEEEEEESCCCHHHHHHHHHH
T ss_pred             ce--eC-eEEEEcCCEEEEEEeCCCCHHHHHHHHHH
Confidence            85  88 55555599999999999998887765543

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=96.29  E-value=0.022  Score=41.92  Aligned_cols=39  Identities=21%  Similarity=0.259  Sum_probs=27.3

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL  255 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~  255 (265)
                      .++.+.+++..  +|.++++ .+|++.+...| .+++++..+.
T Consensus        69 ~~~~~~~~v~~--~Pt~~~~-~~G~~~~~~~g-~~~~~l~~~l  107 (113)
T 1ti3_A           69 KAVAEEWNVEA--MPTFIFL-KDGKLVDKTVG-ADKDGLPTLV  107 (113)
T ss_dssp             HHHHHHHHCSS--TTEEEEE-ETTEEEEEEEC-CCTTHHHHHH
T ss_pred             HHHHHhCCCCc--ccEEEEE-eCCEEEEEEec-CCHHHHHHHH
Confidence            45666777774  8877776 59999998888 4666655443

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=96.28  E-value=0.028  Score=41.30  Aligned_cols=36  Identities=14%  Similarity=-0.163  Sum_probs=25.4

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELS  252 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e  252 (265)
                      .++.+.+++..  +|-++++ .+|++.+...|. .+++++
T Consensus        64 ~~~~~~~~v~~--~Pt~~~~-~~G~~~~~~~G~-~~~~l~   99 (107)
T 1gh2_A           64 QGTAATNNISA--TPTFQFF-RNKVRIDQYQGA-DAVGLE   99 (107)
T ss_dssp             HHHHHHTTCCS--SSEEEEE-ETTEEEEEEESS-CHHHHH
T ss_pred             HHHHHhcCCCc--ccEEEEE-ECCeEEEEEeCC-CHHHHH
Confidence            45667777775  8866666 599999998895 445443

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=96.27  E-value=0.016  Score=44.92  Aligned_cols=78  Identities=14%  Similarity=0.169  Sum_probs=53.3

Q ss_pred             CCceEEEEEeeeccchHHHhhhcchhHHh------h-ccC-CCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCcc
Q 024610          129 IPKVSLVCLTFRASSQAMVDSWSSPFFEA------F-SDS-KNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENV  200 (265)
Q Consensus       129 ~gKvSIV~l~~~~~gq~~~~sw~~p~~e~------~-~~~-~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~  200 (265)
                      .|++.||-++         ++||.+|.+.      + ... .++.++.|+++++                          
T Consensus        39 ~~k~vlv~F~---------a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~~--------------------------   83 (128)
T 2o8v_B           39 ADGAILVDFW---------AEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQN--------------------------   83 (128)
T ss_dssp             CSSEEEEEEE---------CSSCHHHHHTHHHHHHHHHHTTTTEEEEEEETTTC--------------------------
T ss_pred             cCCEEEEEEE---------CCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCC--------------------------
Confidence            4788888665         8999998731      1 122 2577777776552                          


Q ss_pred             ccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610          201 LQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS  256 (265)
Q Consensus       201 l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k  256 (265)
                                  .++.+.+++..  +|-++++ .+|++.+...|..+.+++..+.+
T Consensus        84 ------------~~l~~~~~v~~--~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~  124 (128)
T 2o8v_B           84 ------------PGTAPKYGIRG--IPTLLLF-KNGEVAATKVGALSKGQLKEFLD  124 (128)
T ss_dssp             ------------CTTSGGGTCCS--SSEEEEE-ETTEEEEEEESCCCHHHHHHHHH
T ss_pred             ------------HHHHHHcCCCc--cCEEEEE-eCCEEEEEEcCCCCHHHHHHHHH
Confidence                        12334455654  8888888 69999999999988887765543

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=96.26  E-value=0.034  Score=40.95  Aligned_cols=39  Identities=15%  Similarity=0.024  Sum_probs=28.0

Q ss_pred             hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHH
Q 024610          212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSL  254 (265)
Q Consensus       212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L  254 (265)
                      ..++.+.+++..  +|.++ ++.+|++.+...|. +++++..+
T Consensus        67 ~~~~~~~~~v~~--~Pt~~-~~~~G~~~~~~~G~-~~~~l~~~  105 (112)
T 1ep7_A           67 VAAVAEAAGITA--MPTFH-VYKDGVKADDLVGA-SQDKLKAL  105 (112)
T ss_dssp             THHHHHHHTCCB--SSEEE-EEETTEEEEEEESC-CHHHHHHH
T ss_pred             hHHHHHHcCCCc--ccEEE-EEECCeEEEEEcCC-CHHHHHHH
Confidence            355667778775  77644 45799999999998 77765544

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=96.25  E-value=0.029  Score=40.74  Aligned_cols=39  Identities=13%  Similarity=0.056  Sum_probs=30.1

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL  255 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~  255 (265)
                      .++.+.+++..  +|-+++++ +|++.....|. ++++++.+.
T Consensus        63 ~~~~~~~~v~~--~Pt~~~~~-~g~~~~~~~g~-~~~~l~~~l  101 (105)
T 3m9j_A           63 QDVASESEVKS--MPTFQFFK-KGQKVGEFSGA-NKEKLEATI  101 (105)
T ss_dssp             HHHHHHTTCCB--SSEEEEEE-TTEEEEEEESS-CHHHHHHHH
T ss_pred             HHHHHHcCCCc--CcEEEEEE-CCeEEEEEeCC-CHHHHHHHH
Confidence            45667778875  88888884 89999988898 877776554

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=96.24  E-value=0.066  Score=38.79  Aligned_cols=44  Identities=14%  Similarity=0.200  Sum_probs=34.6

Q ss_pred             CChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610          210 GDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS  256 (265)
Q Consensus       210 g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k  256 (265)
                      +...++.+.+++..  +|.++++ .+|++.+...|..+.+++....+
T Consensus        62 ~~~~~~~~~~~i~~--~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~l~  105 (109)
T 3tco_A           62 DENQKIADKYSVLN--IPTTLIF-VNGQLVDSLVGAVDEDTLESTVN  105 (109)
T ss_dssp             TTCHHHHHHTTCCS--SSEEEEE-ETTEEEEEEESCCCHHHHHHHHH
T ss_pred             ccCHHHHHhcCccc--CCEEEEE-cCCcEEEeeeccCCHHHHHHHHH
Confidence            33456777788875  8988888 69999999999999888766543

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.24  E-value=0.027  Score=42.81  Aligned_cols=40  Identities=18%  Similarity=0.051  Sum_probs=31.8

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL  255 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~  255 (265)
                      .++.+.+++..  +|.++++|. |++.+...|..+.+++....
T Consensus        73 ~~l~~~~~v~~--~Pt~~~~~~-g~~~~~~~G~~~~~~l~~~l  112 (133)
T 1x5d_A           73 QVLASRYGIRG--FPTIKIFQK-GESPVDYDGGRTRSDIVSRA  112 (133)
T ss_dssp             CHHHHHHTCCS--SSEEEEEET-TEEEEEECSCCSHHHHHHHH
T ss_pred             HHHHHhCCCCe--eCeEEEEeC-CCceEEecCCCCHHHHHHHH
Confidence            45667788875  999999996 99999999998888765543

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=96.24  E-value=0.064  Score=39.37  Aligned_cols=41  Identities=22%  Similarity=0.116  Sum_probs=32.7

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS  256 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k  256 (265)
                      .++.+.+++..  +|.++++ .+|++.+...|..+.+++..+.+
T Consensus        69 ~~~~~~~~v~~--~Pt~~~~-~~G~~~~~~~g~~~~~~l~~~l~  109 (115)
T 1thx_A           69 PTTVKKYKVEG--VPALRLV-KGEQILDSTEGVISKDKLLSFLD  109 (115)
T ss_dssp             HHHHHHTTCCS--SSEEEEE-ETTEEEEEEESCCCHHHHHHHHH
T ss_pred             HHHHHHcCCCc--eeEEEEE-cCCEEEEEecCCCCHHHHHHHHH
Confidence            45667778775  8999999 79999999999988887765543

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=96.22  E-value=0.038  Score=39.57  Aligned_cols=40  Identities=13%  Similarity=0.101  Sum_probs=30.7

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL  255 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~  255 (265)
                      .++.+.+++..  +|-++++ .+|++.+...|..+.+++..+.
T Consensus        59 ~~~~~~~~v~~--~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~l   98 (104)
T 2e0q_A           59 PDIAARYGVMS--LPTVIFF-KDGEPVDEIIGAVPREEIEIRI   98 (104)
T ss_dssp             HHHHHHTTCCS--SCEEEEE-ETTEEEEEEESCCCHHHHHHHH
T ss_pred             HHHHHhCCccc--cCEEEEE-ECCeEhhhccCCCCHHHHHHHH
Confidence            45667777775  8888888 6999999999998877765443

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=96.21  E-value=0.062  Score=39.18  Aligned_cols=41  Identities=17%  Similarity=0.171  Sum_probs=31.8

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS  256 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k  256 (265)
                      .++.+.+|+..  +|-++++ .+|++.+...|..+.+++..+.+
T Consensus        64 ~~~~~~~~v~~--~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~  104 (108)
T 2trx_A           64 PGTAPKYGIRG--IPTLLLF-KNGEVAATKVGALSKGQLKEFLD  104 (108)
T ss_dssp             TTHHHHTTCCS--SSEEEEE-ETTEEEEEEESCCCHHHHHHHHH
T ss_pred             HHHHHHcCCcc--cCEEEEE-eCCEEEEEEecCCCHHHHHHHHH
Confidence            34566777775  8888888 69999999999998887765543

>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}

Probab=96.13  E-value=0.045  Score=45.72  Aligned_cols=116  Identities=14%  Similarity=0.096  Sum_probs=67.9

Q ss_pred             cccccCCCceeeCCCC--CeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhH----------Hhhcc
Q 024610           93 LAAVKFPDLDVSYSDR--TTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFF----------EAFSD  160 (265)
Q Consensus        93 ~~AlyFPnl~~~~l~G--~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~----------e~~~~  160 (265)
                      ......|+|.+.+ +|  +++++.+           .++||..|+.++ -       ..|+-.|.          +.|.+
T Consensus        15 ~vGd~aPdf~l~~-~g~~~~v~L~d-----------~~~gk~vVL~fy-P-------~~fTp~Ct~e~~~f~~~~~ef~~   74 (171)
T 2xhf_A           15 KVGDIIPDVLVYE-DVPSKSFPIHD-----------VFRGRKGILFSV-V-------GAFVPGSNNHIPEYLSLYDKFKE   74 (171)
T ss_dssp             CTTCBCCCCEEEC-SSTTCEEETHH-----------HHTTSEEEEEEC-S-------CTTCTTTTSSHHHHHHTHHHHHH
T ss_pred             cCcCCCCCeEEec-CCCCcEEEhHH-----------HhCCCeEEEEEE-C-------CCCCCcCHHHHHHHHHHHHHHHH
Confidence            3455679999874 34  7776542           235786555432 2       33333222          33443


Q ss_pred             CCCee-EEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCc---------ccEEE
Q 024610          161 SKNVH-LYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLL---------TGYIF  230 (265)
Q Consensus       161 ~~~vq-iv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~---------vGYVy  230 (265)
                      . +++ ++-||.++-..     .+.|. .  ..+.. .     ...+ .-+...++-+++|+....         .=++|
T Consensus        75 ~-gv~~VigIS~D~~~~-----~~~w~-~--~~~~~-~-----~f~l-LSD~~~~~a~ayGv~~~~~~~g~g~~~~R~tf  138 (171)
T 2xhf_A           75 E-GYHTIACIAVNDPFV-----MAAWG-K--TVDPE-H-----KIRM-LADMHGEFTRALGTELDSSKMLGNNRSRRYAM  138 (171)
T ss_dssp             T-TCCEEEEEESSCHHH-----HHHHH-H--HHCTT-C-----CSEE-EECTTSHHHHHHTCBCCCHHHHSSCCBCCEEE
T ss_pred             C-CCCEEEEEeCCCHHH-----HHHHH-H--hcCCC-C-----CeEE-EEeCCchHHHHhCCceeccccCCCcceEEEEE
Confidence            3 785 99999988543     22221 1  11121 1     1222 235567899999997543         23899


Q ss_pred             EEeCCCcEEEcccCC
Q 024610          231 LLDKFGRIRWQGFGM  245 (265)
Q Consensus       231 LVD~~grIRWagsG~  245 (265)
                      ||| +|+|||..-..
T Consensus       139 vId-dG~V~~~~v~~  152 (171)
T 2xhf_A          139 LID-DNKIRSVSTEP  152 (171)
T ss_dssp             EEE-TTEEEEEEETT
T ss_pred             EEe-CCEEEEEEEeC
Confidence            999 99999998765

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=96.11  E-value=0.1  Score=37.93  Aligned_cols=41  Identities=15%  Similarity=0.071  Sum_probs=31.0

Q ss_pred             hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610          212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL  255 (265)
Q Consensus       212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~  255 (265)
                      ..++.+.+|+..  +|-++++ .+|++.+...|..+.++++...
T Consensus        62 ~~~~~~~~~v~~--~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l  102 (107)
T 1dby_A           62 SPNVASEYGIRS--IPTIMVF-KGGKKCETIIGAVPKATIVQTV  102 (107)
T ss_dssp             CHHHHHHHTCCS--SCEEEEE-SSSSEEEEEESCCCHHHHHHHH
T ss_pred             CHHHHHHCCCCc--CCEEEEE-eCCEEEEEEeCCCCHHHHHHHH
Confidence            345667788874  7776665 6999999999999988766544

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=96.10  E-value=0.075  Score=40.05  Aligned_cols=41  Identities=17%  Similarity=0.261  Sum_probs=32.3

Q ss_pred             hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610          212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL  255 (265)
Q Consensus       212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~  255 (265)
                      ..++.+.+++..  ++.++++ .+|++.+...|..+.+++..+.
T Consensus        74 ~~~l~~~~~v~~--~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l  114 (119)
T 1w4v_A           74 HTDLAIEYEVSA--VPTVLAM-KNGDVVDKFVGIKDEDQLEAFL  114 (119)
T ss_dssp             THHHHHHTTCCS--SSEEEEE-ETTEEEEEEESCCCHHHHHHHH
T ss_pred             CHHHHHHcCCCc--ccEEEEE-eCCcEEEEEcCCCCHHHHHHHH
Confidence            345777788876  8888888 6999999999998888766544

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=96.10  E-value=0.062  Score=38.98  Aligned_cols=39  Identities=23%  Similarity=0.199  Sum_probs=31.0

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSL  254 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L  254 (265)
                      .++.+.+|+..  +|.++++ .+|++.+...|..+++++...
T Consensus        61 ~~~~~~~~v~~--~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~   99 (105)
T 1nsw_A           61 PETTSQFGIMS--IPTLILF-KGGRPVKQLIGYQPKEQLEAQ   99 (105)
T ss_dssp             HHHHHHTTCCS--SSEEEEE-ETTEEEEEEESCCCHHHHHHH
T ss_pred             HHHHHHcCCcc--ccEEEEE-eCCeEEEEEecCCCHHHHHHH
Confidence            45667777775  8999988 699999999999998776543

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=96.08  E-value=0.039  Score=41.70  Aligned_cols=39  Identities=21%  Similarity=0.178  Sum_probs=28.1

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL  255 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~  255 (265)
                      .++.+.+++..  +|-+++ +.+|++.+.-.|.. +++++.+.
T Consensus        73 ~~l~~~~~v~~--~Pt~~~-~~~G~~~~~~~G~~-~~~l~~~l  111 (114)
T 2oe3_A           73 PDIAKECEVTA--MPTFVL-GKDGQLIGKIIGAN-PTALEKGI  111 (114)
T ss_dssp             HHHHHHTTCCS--BSEEEE-EETTEEEEEEESSC-HHHHHHHH
T ss_pred             HHHHHHCCCCc--ccEEEE-EeCCeEEEEEeCCC-HHHHHHHH
Confidence            44667777775  776555 47999999989988 77766543

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=96.06  E-value=0.024  Score=43.08  Aligned_cols=40  Identities=10%  Similarity=-0.006  Sum_probs=30.2

Q ss_pred             HHHHHHhcccCCcccEEEEEeC---CCcEEEcccCCCCHHHHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDK---FGRIRWQGFGMATPEELSSLL  255 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~---~grIRWagsG~at~~E~e~L~  255 (265)
                      .++.+.+++..  +|.++++|.   +|++.+.-.|..++ |++.+.
T Consensus        66 ~~~~~~~~i~~--~Pt~~~~~~~~~~G~~~~~~~G~~~~-~l~~~~  108 (118)
T 2f51_A           66 GNAADAYGVSS--IPALFFVKKEGNEIKTLDQFVGADVS-RIKADI  108 (118)
T ss_dssp             HHHHHHTTCCS--SSEEEEEEEETTEEEEEEEEESCCHH-HHHHHH
T ss_pred             HHHHHhcCCCC--CCEEEEEeCCCCcceEEEeecCCCHH-HHHHHH
Confidence            45667788875  899999985   49999999998765 455444

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=96.04  E-value=0.04  Score=42.54  Aligned_cols=80  Identities=14%  Similarity=0.201  Sum_probs=51.2

Q ss_pred             CCceEEEEEeeeccchHHHhhhcchhHHh------h-ccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccc
Q 024610          129 IPKVSLVCLTFRASSQAMVDSWSSPFFEA------F-SDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVL  201 (265)
Q Consensus       129 ~gKvSIV~l~~~~~gq~~~~sw~~p~~e~------~-~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l  201 (265)
                      .+++.||-++         ++||.+|...      + ...+++.++.|++++                            
T Consensus        36 ~~k~vvv~F~---------a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~----------------------------   78 (125)
T 1r26_A           36 EDILTVAWFT---------AVWCGPCKTIERPMEKIAYEFPTVKFAKVDADN----------------------------   78 (125)
T ss_dssp             SSSCEEEEEE---------CTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTT----------------------------
T ss_pred             cCCEEEEEEE---------CCcCHhHHHHHHHHHHHHHHCCCCEEEEEECCC----------------------------
Confidence            4788888666         8999998742      1 222445555555433                            


Q ss_pred             cceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHHHHHhhh
Q 024610          202 QRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLSCTSLLL  262 (265)
Q Consensus       202 ~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k~~~~Ll  262 (265)
                                ..++.+.+++..  +|.++++ .+|++.+...| +++++++   +.++.++
T Consensus        79 ----------~~~l~~~~~v~~--~Pt~~i~-~~G~~~~~~~G-~~~~~l~---~~l~~~l  122 (125)
T 1r26_A           79 ----------NSEIVSKCRVLQ--LPTFIIA-RSGKMLGHVIG-ANPGMLR---QKLRDII  122 (125)
T ss_dssp             ----------CHHHHHHTTCCS--SSEEEEE-ETTEEEEEEES-SCHHHHH---HHHHHHH
T ss_pred             ----------CHHHHHHcCCCc--ccEEEEE-eCCeEEEEEeC-CCHHHHH---HHHHHHh
Confidence                      344667777775  7765555 69999988888 5766544   4444444

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=96.02  E-value=0.043  Score=40.54  Aligned_cols=36  Identities=19%  Similarity=0.252  Sum_probs=26.2

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELS  252 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e  252 (265)
                      .++.+.+|+..  +|.++++ .+|++.+...|. .++|++
T Consensus        66 ~~~~~~~~v~~--~Pt~~~~-~~G~~~~~~~G~-~~~~l~  101 (112)
T 3d6i_A           66 SEISELFEISA--VPYFIII-HKGTILKELSGA-DPKEYV  101 (112)
T ss_dssp             HHHHHHTTCCS--SSEEEEE-ETTEEEEEECSC-CHHHHH
T ss_pred             HHHHHHcCCCc--ccEEEEE-ECCEEEEEecCC-CHHHHH
Confidence            45667778875  7877777 499999999998 444443

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=95.87  E-value=0.081  Score=38.20  Aligned_cols=38  Identities=21%  Similarity=0.108  Sum_probs=26.6

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSL  254 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L  254 (265)
                      .++.+.+++..  +|.+++. .+|++.+...| .+++++..+
T Consensus        64 ~~~~~~~~v~~--~Pt~~~~-~~G~~~~~~~g-~~~~~l~~~  101 (106)
T 1xwb_A           64 EDIAMEYNISS--MPTFVFL-KNGVKVEEFAG-ANAKRLEDV  101 (106)
T ss_dssp             HHHHHHTTCCS--SSEEEEE-ETTEEEEEEES-CCHHHHHHH
T ss_pred             HHHHHHcCCCc--ccEEEEE-cCCcEEEEEcC-CCHHHHHHH
Confidence            44666777775  7765544 69999999999 677665443

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=95.83  E-value=0.054  Score=41.09  Aligned_cols=41  Identities=15%  Similarity=0.182  Sum_probs=30.9

Q ss_pred             hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610          212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS  256 (265)
Q Consensus       212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k  256 (265)
                      ..++.+.+++..  +|.+++++ +|++.+.-.|. ++++++.+.+
T Consensus        77 ~~~~~~~~~v~~--~Pt~~~~~-~G~~~~~~~G~-~~~~l~~~l~  117 (121)
T 2j23_A           77 QSQIAQEVGIRA--MPTFVFFK-NGQKIDTVVGA-DPSKLQAAIT  117 (121)
T ss_dssp             CHHHHHHHTCCS--SSEEEEEE-TTEEEEEEESS-CHHHHHHHHH
T ss_pred             CHHHHHHcCCCc--ccEEEEEE-CCeEEeeEcCC-CHHHHHHHHH
Confidence            356777888875  88777775 99999988898 7777665443

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=95.80  E-value=0.069  Score=39.48  Aligned_cols=40  Identities=8%  Similarity=0.038  Sum_probs=28.1

Q ss_pred             hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610          212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL  255 (265)
Q Consensus       212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~  255 (265)
                      ..++.+.+++..  +|.++++ .+|++.....|. +++++..+.
T Consensus        70 ~~~~~~~~~v~~--~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~l  109 (118)
T 2vm1_A           70 LKDVAEAYNVEA--MPTFLFI-KDGEKVDSVVGG-RKDDIHTKI  109 (118)
T ss_dssp             SHHHHHHTTCCS--BSEEEEE-ETTEEEEEEESC-CHHHHHHHH
T ss_pred             CHHHHHHcCCCc--CcEEEEE-eCCeEEEEecCC-CHHHHHHHH
Confidence            355667777775  7876666 599999988884 666655443

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=95.79  E-value=0.1  Score=40.72  Aligned_cols=42  Identities=14%  Similarity=0.120  Sum_probs=32.2

Q ss_pred             hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610          212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS  256 (265)
Q Consensus       212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k  256 (265)
                      ..++.+.+++..  ++-+++++ +|++.....|..+.+++..+.+
T Consensus        98 ~~~l~~~~~v~~--~Pt~~~~~-~G~~~~~~~G~~~~~~l~~~l~  139 (148)
T 3p2a_A           98 EPALSTRFRIRS--IPTIMLYR-NGKMIDMLNGAVPKAPFDNWLD  139 (148)
T ss_dssp             CHHHHHHTTCCS--SSEEEEEE-TTEEEEEESSCCCHHHHHHHHH
T ss_pred             CHHHHHHCCCCc--cCEEEEEE-CCeEEEEEeCCCCHHHHHHHHH
Confidence            345667777775  78777775 9999999999999888776544

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=95.74  E-value=0.11  Score=37.78  Aligned_cols=41  Identities=10%  Similarity=0.075  Sum_probs=31.9

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS  256 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k  256 (265)
                      .++.+.+++..  +|-++++ .+|++.+...|..+.+++..+.+
T Consensus        68 ~~l~~~~~v~~--~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~l~  108 (111)
T 3uvt_A           68 RNICSKYSVRG--YPTLLLF-RGGKKVSEHSGGRDLDSLHRFVL  108 (111)
T ss_dssp             HHHHHHTTCCS--SSEEEEE-ETTEEEEEECSCCSHHHHHHHHH
T ss_pred             HhHHHhcCCCc--ccEEEEE-eCCcEEEeccCCcCHHHHHHHHH
Confidence            45667778875  7876666 59999999999999998876654

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=95.72  E-value=0.12  Score=38.00  Aligned_cols=41  Identities=7%  Similarity=0.000  Sum_probs=30.4

Q ss_pred             hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610          212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL  255 (265)
Q Consensus       212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~  255 (265)
                      ..++.+.+|+..  +|-++++ .+|++.+...|..+.+++....
T Consensus        66 ~~~~~~~~~v~~--~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l  106 (112)
T 1t00_A           66 NPGTAAKYGVMS--IPTLNVY-QGGEVAKTIVGAKPKAAIVRDL  106 (112)
T ss_dssp             CHHHHHHTTCCS--SSEEEEE-ETTEEEEEEESCCCHHHHHHHT
T ss_pred             CHHHHHhCCCCc--ccEEEEE-eCCEEEEEEeCCCCHHHHHHHH
Confidence            345667778875  7765555 6999999999999888766543

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=95.65  E-value=0.15  Score=36.72  Aligned_cols=42  Identities=12%  Similarity=0.122  Sum_probs=32.1

Q ss_pred             hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610          212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS  256 (265)
Q Consensus       212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k  256 (265)
                      ..++.+.+++..  +|.++++ .+|++.+...|..+++++..+.+
T Consensus        61 ~~~~~~~~~v~~--~Pt~~~~-~~g~~~~~~~G~~~~~~l~~~l~  102 (105)
T 1fb6_A           61 APGIATQYNIRS--IPTVLFF-KNGERKESIIGAVPKSTLTDSIE  102 (105)
T ss_dssp             CHHHHHHTTCCS--SSEEEEE-ETTEEEEEEEECCCHHHHHHHHH
T ss_pred             hHHHHHhCCCCc--ccEEEEE-eCCeEEEEEecCCCHHHHHHHHH
Confidence            345667788875  8876666 59999999999999888765543

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=95.63  E-value=0.097  Score=39.04  Aligned_cols=38  Identities=13%  Similarity=0.079  Sum_probs=27.0

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSL  254 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L  254 (265)
                      .++.+.+|+..  +|.++++ .+|++.+...| .++++++.+
T Consensus        75 ~~~~~~~~v~~--~Pt~~~~-~~G~~~~~~~G-~~~~~l~~~  112 (117)
T 2xc2_A           75 EETARKYNISA--MPTFIAI-KNGEKVGDVVG-ASIAKVEDM  112 (117)
T ss_dssp             HHHHHHTTCCS--SSEEEEE-ETTEEEEEEES-SCHHHHHHH
T ss_pred             HHHHHHcCCCc--cceEEEE-eCCcEEEEEeC-CCHHHHHHH
Confidence            45667777775  7765555 69999999889 577665544

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=95.63  E-value=0.049  Score=40.88  Aligned_cols=39  Identities=15%  Similarity=0.146  Sum_probs=32.9

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSL  254 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L  254 (265)
                      .++.+.+|+..  +|-+++++ +|++.....|..+.+++..+
T Consensus        77 ~~~~~~~~i~~--~Pt~~~~~-~G~~~~~~~G~~~~~~l~~~  115 (118)
T 1zma_A           77 QAFRSRYGIPT--VPGFVHIT-DGQINVRCDSSMSAQEIKDF  115 (118)
T ss_dssp             HHHHHHHTCCS--SCEEEEEE-TTEEEEECCTTCCHHHHHHH
T ss_pred             HHHHHHcCCCC--CCeEEEEE-CCEEEEEecCCCCHHHHHHH
Confidence            46778899986  89888886 99999999999999887654

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=95.61  E-value=0.023  Score=47.67  Aligned_cols=106  Identities=10%  Similarity=0.027  Sum_probs=68.0

Q ss_pred             cccccccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHhh-------ccC
Q 024610           89 IIPALAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEAF-------SDS  161 (265)
Q Consensus        89 l~ka~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~~-------~~~  161 (265)
                      ++...-+.+-|+..+.++++.++..-            +..|++.||-++         ++||.+|....       ...
T Consensus        85 ~~~~~fg~~~~~~~v~~l~~~~f~~~------------~~~~~~vlv~F~---------a~wC~~C~~~~p~~~~l~~~~  143 (210)
T 3apq_A           85 YYRYDFGIYDDDPEIITLERREFDAA------------VNSGELWFVNFY---------SPGCSHCHDLAPTWREFAKEV  143 (210)
T ss_dssp             HHHHSSSTTTTCTTSEECCHHHHHHH------------HHHSCCEEEEEE---------CTTCHHHHHHHHHHHHHHHHT
T ss_pred             cccccccccCCCCceEEecHHHHHHH------------HccCCcEEEEEe---------CCCChhHHHHHHHHHHHHHHh
Confidence            34444456666666667777665422            124788888666         89999997421       111


Q ss_pred             -CCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEE
Q 024610          162 -KNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRW  240 (265)
Q Consensus       162 -~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRW  240 (265)
                       +.+.++.|++.+                                      ..++-+.+++..  +|-++++ .+|++.+
T Consensus       144 ~~~v~~~~vd~~~--------------------------------------~~~l~~~~~v~~--~Pt~~~~-~~G~~~~  182 (210)
T 3apq_A          144 DGLLRIGAVNCGD--------------------------------------DRMLCRMKGVNS--YPSLFIF-RSGMAAV  182 (210)
T ss_dssp             BTTBEEEEEETTT--------------------------------------CHHHHHHTTCCS--SSEEEEE-CTTSCCE
T ss_pred             cCceEEEEEECCc--------------------------------------cHHHHHHcCCCc--CCeEEEE-ECCCcee
Confidence             124444444333                                      345666777775  8888888 7999999


Q ss_pred             cccCCCCHHHHHHHHH
Q 024610          241 QGFGMATPEELSSLLS  256 (265)
Q Consensus       241 agsG~at~~E~e~L~k  256 (265)
                      ...|..+.+++....+
T Consensus       183 ~~~G~~~~~~l~~~i~  198 (210)
T 3apq_A          183 KYNGDRSKESLVAFAM  198 (210)
T ss_dssp             ECCSCCCHHHHHHHHH
T ss_pred             EecCCCCHHHHHHHHH
Confidence            9999988887665543

>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10

Probab=95.52  E-value=0.07  Score=44.82  Aligned_cols=123  Identities=13%  Similarity=0.070  Sum_probs=64.5

Q ss_pred             cccCCCceeeC--C---------CC----CeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhH---H
Q 024610           95 AVKFPDLDVSY--S---------DR----TTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFF---E  156 (265)
Q Consensus        95 AlyFPnl~~~~--l---------~G----~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~---e  156 (265)
                      ...+|+|.+.+  -         +|    +++++.           +.++||..|+.++=.++---|+.+=...|.   +
T Consensus         4 Gd~aPdf~l~~~~~~~~~~~~~~~G~~~~~~v~l~-----------d~~~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~   72 (182)
T 1xiy_A            4 NDLIPNVKVMIDVRNMNNISDTDGSPNDFTSIDTH-----------ELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYD   72 (182)
T ss_dssp             TCBCCCCEEEEEHHHHTC--------CCEEEEEHH-----------HHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHH
T ss_pred             CCCCCCeEEEcccccccccccccCCCccceeEeHH-----------HHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHH
Confidence            34679998876  2         56    566543           234688755543321222222211111122   2


Q ss_pred             hhccCCCee-EEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCc---------c
Q 024610          157 AFSDSKNVH-LYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLL---------T  226 (265)
Q Consensus       157 ~~~~~~~vq-iv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~---------v  226 (265)
                      .|....+++ ++-||.++-..     .+.|     .+...-+     ...+ ..+....+-+++|+.-..         .
T Consensus        73 ~f~~~~g~~~V~gvS~D~~~~-----~~~~-----~~~~~~~-----~f~l-LsD~~~~~a~~yGv~~~~~~~G~g~~~~  136 (182)
T 1xiy_A           73 YFIKENNFDDIYCITNNDIYV-----LKSW-----FKSMDIK-----KIKY-ISDGNSSFTDSMNMLVDKSNFFMGMRPW  136 (182)
T ss_dssp             HHHTTSCCSEEEEEESSCHHH-----HHHH-----HHHTTCC-----SSEE-EECTTSHHHHHTTCEEECGGGTCCEEEC
T ss_pred             HHHHhCCCcEEEEEeCCCHHH-----HHHH-----HHHcCCC-----CceE-EEeCchHHHHHhCCceeccccCCCCceE
Confidence            341235785 99999987432     1222     2212211     1222 235567889999985221         3


Q ss_pred             cEEEEEeCCCcEEEcccCC
Q 024610          227 GYIFLLDKFGRIRWQGFGM  245 (265)
Q Consensus       227 GYVyLVD~~grIRWagsG~  245 (265)
                      -++|||| +|+|||..-..
T Consensus       137 R~tfvId-dG~V~~~~v~~  154 (182)
T 1xiy_A          137 RFVAIVE-NNILVKMFQEK  154 (182)
T ss_dssp             CEEEEEE-TTEEEEEEECS
T ss_pred             EEEEEEc-CCEEEEEEEeC
Confidence            3899999 99999987543

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=95.52  E-value=0.18  Score=36.34  Aligned_cols=40  Identities=10%  Similarity=0.061  Sum_probs=31.3

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL  255 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~  255 (265)
                      .++.+.+++..  +|.++++ .+|++.+...|..+.+++....
T Consensus        62 ~~~~~~~~v~~--~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~l  101 (109)
T 2yzu_A           62 PKTAMRYRVMS--IPTVILF-KDGQPVEVLVGAQPKRNYQAKI  101 (109)
T ss_dssp             HHHHHHTTCCS--SSEEEEE-ETTEEEEEEESCCCHHHHHHHH
T ss_pred             HhHHHhCCCCc--CCEEEEE-eCCcEeeeEeCCCCHHHHHHHH
Confidence            45667777775  8888888 6999999999998887765543

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=95.41  E-value=0.007  Score=49.51  Aligned_cols=40  Identities=20%  Similarity=0.175  Sum_probs=32.2

Q ss_pred             CcccEEEEEeCCCcEEEcccCC-------CCHHHHHHHHHHHHhhhc
Q 024610          224 LLTGYIFLLDKFGRIRWQGFGM-------ATPEELSSLLSCTSLLLE  263 (265)
Q Consensus       224 ~~vGYVyLVD~~grIRWagsG~-------at~~E~e~L~k~~~~Ll~  263 (265)
                      ..+|-++++|++|++++.-.|+       -++++.+.+...++..++
T Consensus        99 ~~~PT~~f~~~~G~~v~~~~G~~~~~~~~~~~~~~~~ll~~~~~al~  145 (151)
T 3ph9_A           99 QYVPRIMFVDPSLTVRADIAGRYSNRLYTYEPRDLPLLIENMKKALR  145 (151)
T ss_dssp             CCSSEEEEECTTSCBCTTCCCSCTTSTTCCCGGGHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCEEEEEeCCcCCcccccchhhHHHHHHHHHHHHH
Confidence            3589999999999999999998       667777777776666554

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=95.36  E-value=0.012  Score=47.95  Aligned_cols=26  Identities=15%  Similarity=0.046  Sum_probs=21.1

Q ss_pred             cccCCcccEEEEEeCCCcEEEcccCC
Q 024610          220 KILNLLTGYIFLLDKFGRIRWQGFGM  245 (265)
Q Consensus       220 gi~N~~vGYVyLVD~~grIRWagsG~  245 (265)
                      ++....+|.++++|.+|++.+.-.|.
T Consensus        98 ~~~~~~~Pt~~~~d~~G~~~~~~~G~  123 (164)
T 1sen_A           98 SPDGGYIPRILFLDPSGKVHPEIINE  123 (164)
T ss_dssp             CTTCSCSSEEEEECTTSCBCTTCCCT
T ss_pred             cccCCcCCeEEEECCCCCEEEEEeCC
Confidence            34334589999999999999988884

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=95.36  E-value=0.048  Score=47.50  Aligned_cols=40  Identities=15%  Similarity=0.146  Sum_probs=29.8

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL  255 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~  255 (265)
                      .++-+.+||..  +|-++++. +|++.+.-.|..+.+++....
T Consensus        70 ~~~~~~~~v~~--~Pt~~~~~-~G~~~~~~~g~~~~~~l~~~l  109 (287)
T 3qou_A           70 QMIAAQFGLRA--IPTVYLFQ-NGQPVDGFQGPQPEEAIRALL  109 (287)
T ss_dssp             HHHHHTTTCCS--SSEEEEEE-TTEEEEEEESCCCHHHHHHHH
T ss_pred             HHHHHHcCCCC--CCeEEEEE-CCEEEEEeeCCCCHHHHHHHH
Confidence            45566677764  88787774 999999999998887765443

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=95.17  E-value=0.24  Score=36.65  Aligned_cols=39  Identities=10%  Similarity=0.052  Sum_probs=30.6

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSL  254 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L  254 (265)
                      .++.+.+++..  +|-+++++ +|++.+...|..+.+++..+
T Consensus        74 ~~~~~~~~i~~--~Pt~~~~~-~g~~~~~~~G~~~~~~l~~~  112 (121)
T 2i1u_A           74 PETARNFQVVS--IPTLILFK-DGQPVKRIVGAKGKAALLRE  112 (121)
T ss_dssp             HHHHHHTTCCS--SSEEEEEE-TTEEEEEEESCCCHHHHHHH
T ss_pred             HHHHHhcCCCc--CCEEEEEE-CCEEEEEecCCCCHHHHHHH
Confidence            45667778875  88877776 99999999999988876554

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=95.15  E-value=0.048  Score=45.04  Aligned_cols=37  Identities=14%  Similarity=0.056  Sum_probs=27.0

Q ss_pred             CCceEEEEEeeeccchHHHhhhcchhHH------hh-ccCCCeeEEEEecccc
Q 024610          129 IPKVSLVCLTFRASSQAMVDSWSSPFFE------AF-SDSKNVHLYEVSFIDS  174 (265)
Q Consensus       129 ~gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~-~~~~~vqiv~In~~e~  174 (265)
                      +|++.||.++         ++||.||..      .+ ...+++.++-|+++++
T Consensus        53 ~~k~vvv~F~---------A~WC~pC~~~~P~l~~l~~~~~~v~~~~v~~d~~   96 (167)
T 1z6n_A           53 ERRYRLLVAG---------EMWCPDCQINLAALDFAQRLQPNIELAIISKGRA   96 (167)
T ss_dssp             CSCEEEEEEC---------CTTCHHHHHHHHHHHHHHHHCTTEEEEEECHHHH
T ss_pred             CCCEEEEEEE---------CCCChhHHHHHHHHHHHHHHCCCcEEEEEECCCC
Confidence            5788888655         999999973      22 3456788888887764

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=95.13  E-value=0.11  Score=39.40  Aligned_cols=41  Identities=5%  Similarity=0.034  Sum_probs=27.8

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCcEE-EcccCCCCHHHHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGRIR-WQGFGMATPEELSSLL  255 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~grIR-WagsG~at~~E~e~L~  255 (265)
                      .++-+.++|..  +|-+++++..+++. +.-.|..+.+++....
T Consensus        82 ~~l~~~~~v~~--~Pt~~~~~~g~~~~~~~~~G~~~~~~l~~~i  123 (127)
T 3h79_A           82 PDVIERMRVSG--FPTMRYYTRIDKQEPFEYSGQRYLSLVDSFV  123 (127)
T ss_dssp             HHHHHHTTCCS--SSEEEEECSSCSSSCEECCSCCCHHHHHHHH
T ss_pred             HhHHHhcCCcc--CCEEEEEeCCCCCCceEecCCccHHHHHHHH
Confidence            45667777775  88888998777642 4445777777766544

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=95.12  E-value=0.25  Score=35.91  Aligned_cols=43  Identities=9%  Similarity=0.176  Sum_probs=32.9

Q ss_pred             ChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610          211 DHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS  256 (265)
Q Consensus       211 ~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k  256 (265)
                      ...++.+.+++..  +|-+++++ +|++.+...|..+.+++..+.+
T Consensus        64 ~~~~l~~~~~v~~--~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~l~  106 (111)
T 3gnj_A           64 EEKTLFQRFSLKG--VPQILYFK-DGEYKGKMAGDVEDDEVEQMIA  106 (111)
T ss_dssp             TCHHHHHHTTCCS--SCEEEEEE-TTEEEEEEESSCCHHHHHHHHH
T ss_pred             cChhHHHhcCCCc--CCEEEEEE-CCEEEEEEeccCCHHHHHHHHH
Confidence            3455677788875  88888885 9999999999988887766543

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=95.10  E-value=0.2  Score=37.87  Aligned_cols=41  Identities=12%  Similarity=-0.020  Sum_probs=31.9

Q ss_pred             ChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHH
Q 024610          211 DHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSS  253 (265)
Q Consensus       211 ~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~  253 (265)
                      ...++.+.+++..  +|.++++|..|++.+.-.|..+.+++..
T Consensus        77 ~~~~l~~~~~v~~--~Pt~~~~~~~~~~~~~~~G~~~~~~l~~  117 (130)
T 2dml_A           77 KHQSLGGQYGVQG--FPTIKIFGANKNKPEDYQGGRTGEAIVD  117 (130)
T ss_dssp             TCHHHHHHHTCCS--SSEEEEESSCTTSCEECCSCCSHHHHHH
T ss_pred             CCHHHHHHcCCCc--cCEEEEEeCCCCeEEEeecCCCHHHHHH
Confidence            3456777888875  9999999988887777788888776543

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=93.59  E-value=0.0062  Score=46.63  Aligned_cols=40  Identities=15%  Similarity=0.095  Sum_probs=31.2

Q ss_pred             HHHHHHhcccCCcccEEEEEeC-CCcE--EEcccCCCCHHHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDK-FGRI--RWQGFGMATPEELSSL  254 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~-~grI--RWagsG~at~~E~e~L  254 (265)
                      .++.+.+++..  +|.++++|+ +|++  .....|..+++++..+
T Consensus        68 ~~~~~~~~v~~--~Pt~~~~d~~~G~~~~~~~~~G~~~~~~l~~~  110 (130)
T 2lst_A           68 QELARRYRVPG--TPTFVFLVPKAGAWEEVGRLFGSRPRAEFLKE  110 (130)
Confidence            45667778875  999999995 6999  8888898877766544

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=94.39  E-value=0.35  Score=37.49  Aligned_cols=43  Identities=16%  Similarity=0.277  Sum_probs=31.5

Q ss_pred             ChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610          211 DHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS  256 (265)
Q Consensus       211 ~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k  256 (265)
                      ...++.+.+++..  +|-++++ .+|++.+.-.|..+.+++....+
T Consensus        66 ~~~~l~~~~~v~~--~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~  108 (140)
T 3hz4_A           66 TNPWTAEKYGVQG--TPTFKFF-CHGRPVWEQVGQIYPSILKNAVR  108 (140)
T ss_dssp             TCHHHHHHHTCCE--ESEEEEE-ETTEEEEEEESSCCHHHHHHHHH
T ss_pred             cCHhHHHHCCCCc--CCEEEEE-eCCcEEEEEcCCCCHHHHHHHHH
Confidence            3455677788875  8855555 69999999999988887665443

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=94.15  E-value=0.47  Score=37.82  Aligned_cols=41  Identities=17%  Similarity=0.139  Sum_probs=31.3

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS  256 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k  256 (265)
                      .++-+.++|..  +|.+++++ +|++.....|..+.++++.+.+
T Consensus       108 ~~l~~~~~i~~--~Pt~~~~~-~G~~~~~~~G~~~~~~l~~~l~  148 (155)
T 2ppt_A          108 PAVAGRHRIQG--IPAFILFH-KGRELARAAGARPASELVGFVR  148 (155)
T ss_dssp             THHHHHTTCCS--SSEEEEEE-TTEEEEEEESCCCHHHHHHHHH
T ss_pred             HHHHHHcCCCc--CCEEEEEe-CCeEEEEecCCCCHHHHHHHHH
Confidence            34667778775  88888884 9999999999888877665543

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=94.14  E-value=0.33  Score=37.02  Aligned_cols=40  Identities=18%  Similarity=0.144  Sum_probs=29.9

Q ss_pred             hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610          212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL  255 (265)
Q Consensus       212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~  255 (265)
                      ..++.+.++|..  ++.+++++ +|+ ...-.|..+.+++..+.
T Consensus        80 ~~~~~~~~~v~~--~Pt~~~~~-~G~-~~~~~g~~~~~~l~~~l  119 (140)
T 2dj1_A           80 ASMLASKFDVSG--YPTIKILK-KGQ-AVDYDGSRTQEEIVAKV  119 (140)
T ss_dssp             CHHHHHHTTCCS--SSEEEEEE-TTE-EEECCSCCCHHHHHHHH
T ss_pred             cHHHHHHCCCCc--cCeEEEEE-CCc-EEEcCCCCCHHHHHHHH
Confidence            356778888875  89999884 788 56777888887765544

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=93.94  E-value=0.23  Score=48.29  Aligned_cols=104  Identities=12%  Similarity=0.059  Sum_probs=65.3

Q ss_pred             cccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh----------hcc-C
Q 024610           93 LAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA----------FSD-S  161 (265)
Q Consensus        93 ~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~----------~~~-~  161 (265)
                      ..++|=|+-.+..++++++..-.           .-.|++.||-++         ++||.||...          +.+ .
T Consensus         4 ~~~Ly~~~~~V~~Lt~~~f~~~v-----------~~~~k~vlV~Fy---------A~WC~pCk~~~P~l~~la~~~~~~~   63 (519)
T 3t58_A            4 MSVLYSSSDPLTLLDADSVRPTV-----------LGSSSAWAVEFF---------ASWCGHAIAFAPTWKELANDVKDWR   63 (519)
T ss_dssp             -CCSCCTTSSSEEECTTTHHHHH-----------SSCSSEEEEEEE---------CTTSHHHHHHHHHHHHHHHHHGGGT
T ss_pred             ccccCCCCCCcEECChHHHHHHH-----------HhCCCeEEEEEE---------CCCCHHHHHHHHHHHHHHHHhhCcC
Confidence            34556666556666666654211           013588888666         8999998731          222 2


Q ss_pred             CCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeC---CCcE
Q 024610          162 KNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDK---FGRI  238 (265)
Q Consensus       162 ~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~---~grI  238 (265)
                      +.+.++.|++.+.                                    ...++-+.+||.-  ++-++++|.   +|++
T Consensus        64 ~~v~~~~VD~d~d------------------------------------~~~~l~~~~~V~~--~PTl~~f~~g~~~G~~  105 (519)
T 3t58_A           64 PALNLAVLDCAEE------------------------------------TNSAVCREFNIAG--FPTVRFFQAFTKNGSG  105 (519)
T ss_dssp             TTEEEEEEETTSG------------------------------------GGHHHHHHTTCCS--BSEEEEECTTCCSCCC
T ss_pred             CcEEEEEEECCcc------------------------------------ccHHHHHHcCCcc--cCEEEEEcCcccCCCc
Confidence            3466666665321                                    1245667778875  899999997   7887


Q ss_pred             EEcccCCCCHHHHHHH
Q 024610          239 RWQGFGMATPEELSSL  254 (265)
Q Consensus       239 RWagsG~at~~E~e~L  254 (265)
                      .....|..+.+++...
T Consensus       106 ~~~~~g~~~~~~L~~~  121 (519)
T 3t58_A          106 ATLPGAGANVQTLRMR  121 (519)
T ss_dssp             EEECCSSCCHHHHHHH
T ss_pred             eeEecCCCCHHHHHHH
Confidence            7777787777766543

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=93.80  E-value=0.38  Score=40.55  Aligned_cols=78  Identities=13%  Similarity=0.175  Sum_probs=53.1

Q ss_pred             CCceEEEEEeeeccchHHHhhhcchhHHh------h-ccCC-CeeEEEEecccchhhccccchHHHHHHHHhcCCCCCcc
Q 024610          129 IPKVSLVCLTFRASSQAMVDSWSSPFFEA------F-SDSK-NVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENV  200 (265)
Q Consensus       129 ~gKvSIV~l~~~~~gq~~~~sw~~p~~e~------~-~~~~-~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~  200 (265)
                      .+|+.||-++         ++||.+|...      + ...+ .+.++.|+++++                          
T Consensus        29 ~~k~vvv~F~---------a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~--------------------------   73 (222)
T 3dxb_A           29 ADGAILVDFW---------AEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN--------------------------   73 (222)
T ss_dssp             CSSCEEEEEE---------CTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTC--------------------------
T ss_pred             cCCEEEEEEE---------CCcCHHHHHHHHHHHHHHHHhcCCcEEEEEECCCC--------------------------
Confidence            4788888666         8999998732      1 1222 367777776542                          


Q ss_pred             ccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610          201 LQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS  256 (265)
Q Consensus       201 l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k  256 (265)
                                  .++.+.+++.-  +|.+++++ +|++.+.-.|..+.+++..+.+
T Consensus        74 ------------~~l~~~~~v~~--~Pt~~~~~-~G~~~~~~~G~~~~~~l~~~l~  114 (222)
T 3dxb_A           74 ------------PGTAPKYGIRG--IPTLLLFK-NGEVAATKVGALSKGQLKEFLD  114 (222)
T ss_dssp             ------------TTTGGGGTCCS--BSEEEEEE-TTEEEEEEESCCCHHHHHHHHH
T ss_pred             ------------HHHHHHcCCCc--CCEEEEEE-CCeEEEEeccccChHHHHHHHH
Confidence                        22234456654  77777776 8999999999999888776654

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=93.72  E-value=0.12  Score=38.40  Aligned_cols=34  Identities=21%  Similarity=0.040  Sum_probs=25.2

Q ss_pred             cccCCcccEEEEEeCCCcE-EEcccCCCCHHHHHHHH
Q 024610          220 KILNLLTGYIFLLDKFGRI-RWQGFGMATPEELSSLL  255 (265)
Q Consensus       220 gi~N~~vGYVyLVD~~grI-RWagsG~at~~E~e~L~  255 (265)
                      ++..  +|-++++|..|++ .....|..+.+++....
T Consensus        78 ~v~~--~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~i  112 (121)
T 2djj_A           78 EIQG--FPTIKLYPAGAKGQPVTYSGSRTVEDLIKFI  112 (121)
T ss_dssp             CCSS--SSEEEEECSSCTTSCCCCCCCSCHHHHHHHH
T ss_pred             ccCc--CCeEEEEeCcCCCCceEecCCCCHHHHHHHH
Confidence            5554  8999999988785 67777888877766544

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=93.58  E-value=0.14  Score=39.92  Aligned_cols=77  Identities=16%  Similarity=0.053  Sum_probs=51.4

Q ss_pred             CceEEEEEeeeccchHHHhhhcchhHH------hh-ccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCcccc
Q 024610          130 PKVSLVCLTFRASSQAMVDSWSSPFFE------AF-SDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQ  202 (265)
Q Consensus       130 gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~-~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~  202 (265)
                      |++.||-++         ++||.||..      .+ ...+++.++.|++.+..                           
T Consensus        30 ~~~vvv~f~---------a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~~~~~---------------------------   73 (135)
T 2dbc_A           30 DLWVVIHLY---------RSSVPMCLVVNQHLSVLARKFPETKFVKAIVNSCI---------------------------   73 (135)
T ss_dssp             SCEEEEEEC---------CTTCHHHHHHHHHHHHHHHHCSSEEEEEECCSSSC---------------------------
T ss_pred             CCEEEEEEE---------CCCChHHHHHHHHHHHHHHHCCCcEEEEEEhhcCc---------------------------
Confidence            577777655         999999873      11 23456777777765520                           


Q ss_pred             ceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCC-------CHHHHHHHHHHHH
Q 024610          203 RQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMA-------TPEELSSLLSCTS  259 (265)
Q Consensus       203 ~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~a-------t~~E~e~L~k~~~  259 (265)
                                    +.++|..  +|-+++++ +|++...-.|..       +.++++.+..-..
T Consensus        74 --------------~~~~i~~--~Pt~~~~~-~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~~~  120 (135)
T 2dbc_A           74 --------------EHYHDNC--LPTIFVYK-NGQIEGKFIGIIECGGINLKLEELEWKLSEVG  120 (135)
T ss_dssp             --------------SSCCSSC--CSEEEEES-SSSCSEEEESTTTTTCTTCCHHHHHHHHHHHT
T ss_pred             --------------ccCCCCC--CCEEEEEE-CCEEEEEEEeEEeeCCCcCCHHHHHHHHHHcC
Confidence                          2344544  77777776 999988888875       6777777666543

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=93.06  E-value=0.16  Score=38.82  Aligned_cols=42  Identities=17%  Similarity=0.180  Sum_probs=32.3

Q ss_pred             ChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610          211 DHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL  255 (265)
Q Consensus       211 ~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~  255 (265)
                      ...++.+.+|+..  +|.++++ .+|++...-.|..+++++....
T Consensus        77 ~~~~l~~~~~v~~--~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l  118 (123)
T 1oaz_A           77 QNPGTAPKYGIRG--IPTLLLF-KNGEVAATKVGALSKGQLKEFL  118 (123)
T ss_dssp             SCTTTGGGGTCCB--SSEEEEE-ESSSEEEEEESCCCHHHHHHHH
T ss_pred             CCHHHHHHcCCCc--cCEEEEE-ECCEEEEEEeCCCCHHHHHHHH
Confidence            3345667778875  8999988 7999999999998887765543

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=92.98  E-value=0.82  Score=33.88  Aligned_cols=42  Identities=7%  Similarity=-0.134  Sum_probs=28.0

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCcE-EEccc--CCCCHHHHHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGRI-RWQGF--GMATPEELSSLLS  256 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~grI-RWags--G~at~~E~e~L~k  256 (265)
                      .++.+.+++..  +|.++++|..|++ |+.|.  |..+++++..+.+
T Consensus        65 ~~~~~~~~v~~--~Pt~~~~~~~~~~~~~~g~~~~~~~~~~l~~~l~  109 (122)
T 3aps_A           65 PQTCQKAGIKA--YPSVKLYQYERAKKSIWEEQINSRDAKTIAALIY  109 (122)
T ss_dssp             HHHHHHTTCCS--SSEEEEEEEEGGGTEEEEEEECCSCHHHHHHHHH
T ss_pred             HHHHHHcCCCc--cceEEEEeCCCccceeeccccCcCCHHHHHHHHH
Confidence            45667788875  8999999876663 44444  4467777665443

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=92.92  E-value=0.32  Score=38.05  Aligned_cols=78  Identities=13%  Similarity=0.102  Sum_probs=51.3

Q ss_pred             CceEEEEEeeeccchHHHhhhcchhHH------hhccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccc
Q 024610          130 PKVSLVCLTFRASSQAMVDSWSSPFFE------AFSDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQR  203 (265)
Q Consensus       130 gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~  203 (265)
                      +++.||  +|.       ++||.||..      .+.+.+++.+|.|.+++++-     +                     
T Consensus        24 ~~~vvi--~kh-------atwCgpc~~~~~~~e~~~~~~~v~~~~vdVde~r~-----~---------------------   68 (112)
T 3iv4_A           24 NKYVFV--LKH-------SETCPISANAYDQFNKFLYERDMDGYYLIVQQERD-----L---------------------   68 (112)
T ss_dssp             CSEEEE--EEE-------CTTCHHHHHHHHHHHHHHHHHTCCEEEEEGGGGHH-----H---------------------
T ss_pred             CCCEEE--EEE-------CCcCHhHHHHHHHHHHHhccCCceEEEEEeecCch-----h---------------------
Confidence            567777  443       999999873      33323567777777766321     1                     


Q ss_pred             eeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccC-CCCHHHHH
Q 024610          204 QIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFG-MATPEELS  252 (265)
Q Consensus       204 ~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG-~at~~E~e  252 (265)
                              ..++-+.+||.. -+|-++|+. +|++.|.+|- .-+.++++
T Consensus        69 --------Sn~IA~~~~V~h-~sPq~il~k-~G~~v~~~SH~~I~~~~l~  108 (112)
T 3iv4_A           69 --------SDYIAKKTNVKH-ESPQAFYFV-NGEMVWNRDHGDINVSSLA  108 (112)
T ss_dssp             --------HHHHHHHHTCCC-CSSEEEEEE-TTEEEEEEEGGGCSHHHHH
T ss_pred             --------hHHHHHHhCCcc-CCCeEEEEE-CCEEEEEeeccccCHHHHH
Confidence                    144778888873 278888886 9999999654 45555443

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=92.88  E-value=0.11  Score=39.41  Aligned_cols=77  Identities=14%  Similarity=0.227  Sum_probs=46.7

Q ss_pred             CCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCC
Q 024610          129 IPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGE  198 (265)
Q Consensus       129 ~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~  198 (265)
                      .+++.||-++         ++||.+|.+          .+...+++.++.|+..++.                       
T Consensus        24 ~~~~vlv~f~---------a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~-----------------------   71 (133)
T 2dj3_A           24 PKKDVLIEFY---------APWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATAND-----------------------   71 (133)
T ss_dssp             TTSEEEEEEC---------CTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSC-----------------------
T ss_pred             CCCcEEEEEE---------CCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCH-----------------------
Confidence            3788888655         899999873          1222245777777765421                       


Q ss_pred             ccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcE---EEcccCCCCHHHHHHHH
Q 024610          199 NVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRI---RWQGFGMATPEELSSLL  255 (265)
Q Consensus       199 ~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grI---RWagsG~at~~E~e~L~  255 (265)
                                     .+.+.+++..  +|.++++|..+++   ++.| |..+.+++....
T Consensus        72 ---------------~~~~~~~v~~--~Pt~~~~~~g~~~~~~~~~g-g~~~~~~l~~~l  113 (133)
T 2dj3_A           72 ---------------ITNDQYKVEG--FPTIYFAPSGDKKNPIKFEG-GNRDLEHLSKFI  113 (133)
T ss_dssp             ---------------CCCSSCCCSS--SSEEEEECTTCTTSCEECCS-SCCSTTHHHHHH
T ss_pred             ---------------HHHhhcCCCc--CCEEEEEeCCCcccceEecC-CCcCHHHHHHHH
Confidence                           1122345554  8999999977654   4443 556666655443

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=92.78  E-value=0.21  Score=36.59  Aligned_cols=39  Identities=8%  Similarity=0.028  Sum_probs=28.1

Q ss_pred             HHHHHhcccCCcccEEEEEeCCCcEE--EcccCCCCHHHHHHHH
Q 024610          214 YFRKELKILNLLTGYIFLLDKFGRIR--WQGFGMATPEELSSLL  255 (265)
Q Consensus       214 ~iRe~Lgi~N~~vGYVyLVD~~grIR--WagsG~at~~E~e~L~  255 (265)
                      ++.+.+++..  +|.++++. +|++.  +...|..+.+++..+.
T Consensus        72 ~~~~~~~v~~--~Pt~~~~~-~g~~~~~~~~~g~~~~~~l~~~l  112 (120)
T 1mek_A           72 DLAQQYGVRG--YPTIKFFR-NGDTASPKEYTAGREADDIVNWL  112 (120)
T ss_dssp             SSHHHHTCCS--SSEEEEEE-SSCSSSCEECCCCSSHHHHHHHH
T ss_pred             HHHHHCCCCc--ccEEEEEe-CCCcCCcccccCccCHHHHHHHH
Confidence            4556778775  89899885 88865  7777887877765443

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=92.77  E-value=0.39  Score=39.98  Aligned_cols=24  Identities=4%  Similarity=-0.237  Sum_probs=19.6

Q ss_pred             cccCCcccEEEEEeCCCcEEEcccCC
Q 024610          220 KILNLLTGYIFLLDKFGRIRWQGFGM  245 (265)
Q Consensus       220 gi~N~~vGYVyLVD~~grIRWagsG~  245 (265)
                      |+.  -+|.++++|++|++.+.+...
T Consensus       101 gv~--g~Pt~v~l~~dG~~v~~~ty~  124 (173)
T 3ira_A          101 GRG--GWPLNIIMTPGKKPFFAGTYI  124 (173)
T ss_dssp             SCC--CSSEEEEECTTSCEEEEESSC
T ss_pred             CCC--CCcceeeECCCCCceeeeeeC
Confidence            665  499999999999999986433

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=92.12  E-value=0.78  Score=34.65  Aligned_cols=82  Identities=12%  Similarity=0.118  Sum_probs=52.6

Q ss_pred             CceEEEEEeeeccchHHHhh-------hcchhHH------h-hccC-CCeeEEEEecccchhhccccchHHHHHHHHhcC
Q 024610          130 PKVSLVCLTFRASSQAMVDS-------WSSPFFE------A-FSDS-KNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSK  194 (265)
Q Consensus       130 gKvSIV~l~~~~~gq~~~~s-------w~~p~~e------~-~~~~-~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~  194 (265)
                      |++.||-++         ++       ||.||..      . .... .++.++.|++.+.-.        +         
T Consensus        24 ~~~v~v~F~---------a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~--------~---------   77 (123)
T 1wou_A           24 GKTIFAYFT---------GSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPY--------W---------   77 (123)
T ss_dssp             TSEEEEEEE---------CCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHH--------H---------
T ss_pred             CCEEEEEEE---------ccCCCCCCCcCHHHHHhhHHHHHHHHHcCCCcEEEEEECCCchh--------h---------
Confidence            788888655         66       9999873      2 2333 378999999865210        0         


Q ss_pred             CCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610          195 DAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL  255 (265)
Q Consensus       195 p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~  255 (265)
                                    .+....+.+.+++..  +|-+++++..+++  .|...+++++++.+.
T Consensus        78 --------------~d~~~~~~~~~~i~~--~Pt~~~~~~~~~~--~g~~~~~~~~l~~~i  120 (123)
T 1wou_A           78 --------------KDPNNDFRKNLKVTA--VPTLLKYGTPQKL--VESECLQANLVEMLF  120 (123)
T ss_dssp             --------------HCTTCHHHHHHCCCS--SSEEEETTSSCEE--EGGGGGCHHHHHHHH
T ss_pred             --------------hchhHHHHHHCCCCe--eCEEEEEcCCceE--eccccCCHHHHHHHH
Confidence                          122345778899886  9999999874444  344446677665543

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.03  E-value=1  Score=33.74  Aligned_cols=42  Identities=17%  Similarity=0.136  Sum_probs=30.8

Q ss_pred             ChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610          211 DHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS  256 (265)
Q Consensus       211 ~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k  256 (265)
                      +..++.+.+++..  +|.++++ .+|++ ..-.|..+.+++..+.+
T Consensus        65 ~~~~~~~~~~v~~--~Pt~~~~-~~G~~-~~~~G~~~~~~l~~~l~  106 (126)
T 1x5e_A           65 EQPGLSGRFIINA--LPTIYHC-KDGEF-RRYQGPRTKKDFINFIS  106 (126)
T ss_dssp             TCHHHHHHTTCCS--SSEEEEE-ETTEE-EECCSCCCHHHHHHHHH
T ss_pred             CCHHHHHHcCCcc--cCEEEEE-eCCeE-EEeecCCCHHHHHHHHH
Confidence            3455777788875  8888888 58997 67788888877665543

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=91.96  E-value=1.9  Score=32.91  Aligned_cols=40  Identities=13%  Similarity=0.041  Sum_probs=30.4

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL  255 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~  255 (265)
                      .++.+.+++..  +|-++++ .+|++.+...|..+.+++....
T Consensus        94 ~~l~~~~~v~~--~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~i  133 (140)
T 1v98_A           94 PGLAARYGVRS--VPTLVLF-RRGAPVATWVGASPRRVLEERL  133 (140)
T ss_dssp             HHHHHHTTCCS--SSEEEEE-ETTEEEEEEESCCCHHHHHHHH
T ss_pred             HHHHHHCCCCc--cCEEEEE-eCCcEEEEEeCCCCHHHHHHHH
Confidence            34666777875  8888877 4999999999998877765544

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=91.56  E-value=0.045  Score=41.36  Aligned_cols=39  Identities=10%  Similarity=0.075  Sum_probs=26.3

Q ss_pred             hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHH
Q 024610          212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSL  254 (265)
Q Consensus       212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L  254 (265)
                      ..++.+.+++..  +|.++++ .+|++.+...|. +++++..+
T Consensus        78 ~~~~~~~~~v~~--~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~  116 (130)
T 1wmj_A           78 LKEVAEKYNVEA--MPTFLFI-KDGAEADKVVGA-RKDDLQNT  116 (130)
T ss_dssp             SGGGHHHHTCCS--SCCCCBC-TTTTCCBCCCTT-CTTTHHHH
T ss_pred             hHHHHHHcCCCc--cceEEEE-eCCeEEEEEeCC-CHHHHHHH
Confidence            345667778775  7755444 799999888884 55555443

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=90.53  E-value=1.6  Score=36.95  Aligned_cols=37  Identities=16%  Similarity=0.203  Sum_probs=21.6

Q ss_pred             HHHHHHhcccCCcccEEEEEeCC-----CcEEEcccCCCCHHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDKF-----GRIRWQGFGMATPEELSS  253 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~-----grIRWagsG~at~~E~e~  253 (265)
                      .++-+.++|.-  ++-+++++..     |++. ...| ++++++..
T Consensus        79 ~~l~~~~~v~~--~Pt~~~~~~g~~~~~g~~~-~~~g-~~~~~l~~  120 (244)
T 3q6o_A           79 SAVCRDFNIPG--FPTVRFFXAFTXNGSGAVF-PVAG-ADVQTLRE  120 (244)
T ss_dssp             HHHHHHTTCCS--SSEEEEECTTCCSSSCEEC-CCTT-CCHHHHHH
T ss_pred             HHHHHHcCCCc--cCEEEEEeCCCcCCCCeeE-ecCC-CCHHHHHH
Confidence            44566677764  7888888852     4443 3334 45555443

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=90.20  E-value=1.3  Score=36.59  Aligned_cols=40  Identities=13%  Similarity=0.034  Sum_probs=30.3

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL  255 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~  255 (265)
                      .++.+.+|+..  +|-+++++ +|++.+...|..+.+++....
T Consensus       182 ~~l~~~~~v~~--~Pt~~~~~-~G~~~~~~~G~~~~~~l~~~l  221 (226)
T 1a8l_A          182 PEWADQYNVMA--VPKIVIQV-NGEDRVEFEGAYPEKMFLEKL  221 (226)
T ss_dssp             HHHHHHTTCCS--SCEEEEEE-TTEEEEEEESCCCHHHHHHHH
T ss_pred             HHHHHhCCCcc--cCeEEEEe-CCceeEEEcCCCCHHHHHHHH
Confidence            45667778875  78766665 999999999999988765443

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=89.83  E-value=0.51  Score=32.50  Aligned_cols=32  Identities=25%  Similarity=0.327  Sum_probs=20.3

Q ss_pred             HHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610          217 KELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL  255 (265)
Q Consensus       217 e~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~  255 (265)
                      +.+|+..  +|-+++   +|++  ...|..++++++...
T Consensus        50 ~~~~v~~--~Pt~~~---~G~~--~~~G~~~~~~l~~~l   81 (85)
T 1fo5_A           50 MEYGIMA--VPTIVI---NGDV--EFIGAPTKEALVEAI   81 (85)
T ss_dssp             TSTTTCC--SSEEEE---TTEE--ECCSSSSSHHHHHHH
T ss_pred             HHCCCcc--cCEEEE---CCEE--eeecCCCHHHHHHHH
Confidence            3345553  787777   7898  445666677766543

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=89.26  E-value=0.063  Score=38.52  Aligned_cols=40  Identities=18%  Similarity=0.146  Sum_probs=30.1

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL  255 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~  255 (265)
                      .++.+.+|+..  +|-++++ .+|++.+...|..+.+++....
T Consensus        63 ~~~~~~~~v~~--~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~l  102 (106)
T 2yj7_A           63 PNTAAQYGIRS--IPTLLLF-KNGQVVDRLVGAQPKEALKERI  102 (106)
Confidence            34556677765  8888888 6999999999988887765543

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=89.57  E-value=0.56  Score=43.90  Aligned_cols=76  Identities=12%  Similarity=0.099  Sum_probs=50.1

Q ss_pred             CceEEEEEeeeccchHHHhhhcchhHH----------hhccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCc
Q 024610          130 PKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGEN  199 (265)
Q Consensus       130 gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~  199 (265)
                      ||+.||-++         ++||.||..          .+.+.+++.++.|+..++-                        
T Consensus       370 ~k~vlv~f~---------a~wC~~C~~~~p~~~~l~~~~~~~~~v~~~~id~~~~~------------------------  416 (481)
T 3f8u_A          370 NKDVLIEFY---------APWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAND------------------------  416 (481)
T ss_dssp             TCEEEEEEE---------CTTBHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTSSC------------------------
T ss_pred             CCcEEEEEe---------cCcChhHHHhhHHHHHHHHHhccCCCEEEEEEECCchh------------------------
Confidence            788888666         999999873          2344456777777765531                        


Q ss_pred             cccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcE-EEcccCCCCHHHHHHHH
Q 024610          200 VLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRI-RWQGFGMATPEELSSLL  255 (265)
Q Consensus       200 ~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grI-RWagsG~at~~E~e~L~  255 (265)
                                     +-+.+++..  +|-+++++..|+| .+...|..+.+++....
T Consensus       417 ---------------~~~~~~v~~--~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~l  456 (481)
T 3f8u_A          417 ---------------VPSPYEVRG--FPTIYFSPANKKLNPKKYEGGRELSDFISYL  456 (481)
T ss_dssp             ---------------CCTTCCCCS--SSEEEEECTTCTTSCEECCSCCSHHHHHHHH
T ss_pred             ---------------hHhhCCCcc--cCEEEEEeCCCeEeeeEeCCCCCHHHHHHHH
Confidence                           112234443  7888999988875 66777888777765543

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=89.37  E-value=2.3  Score=33.24  Aligned_cols=35  Identities=11%  Similarity=0.378  Sum_probs=24.1

Q ss_pred             CceEEEEEeeeccchHHHhhhcchhHH------hh-cc-CCCeeEEEEeccc
Q 024610          130 PKVSLVCLTFRASSQAMVDSWSSPFFE------AF-SD-SKNVHLYEVSFID  173 (265)
Q Consensus       130 gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~-~~-~~~vqiv~In~~e  173 (265)
                      |++.||-++         ++||.||..      .+ .. .+++.++.|++++
T Consensus        23 ~k~vlv~F~---------a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~   65 (142)
T 1qgv_A           23 DRVVVIRFG---------HDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITE   65 (142)
T ss_dssp             SSEEEEEEE---------CTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTT
T ss_pred             CCEEEEEEE---------CCCCHHHHHHHHHHHHHHHHhCCCeEEEEEcccc
Confidence            788888666         899999873      11 11 2457888888765

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=86.88  E-value=1.2  Score=34.01  Aligned_cols=38  Identities=8%  Similarity=-0.008  Sum_probs=24.6

Q ss_pred             HHHHHHhccc----CCcccEEEEEeCCCcEEEcccCCCCHHHH
Q 024610          213 YYFRKELKIL----NLLTGYIFLLDKFGRIRWQGFGMATPEEL  251 (265)
Q Consensus       213 ~~iRe~Lgi~----N~~vGYVyLVD~~grIRWagsG~at~~E~  251 (265)
                      .++.+.+++.    -..+|-++++ .+|++.....|..+.+++
T Consensus        71 ~~~~~~~~v~~~~~~~~~Pt~~~~-~~G~~~~~~~G~~~~~~l  112 (137)
T 2dj0_A           71 TDVSTRYKVSTSPLTKQLPTLILF-QGGKEAMRRPQIDKKGRA  112 (137)
T ss_dssp             HHHHHHTTCCCCSSSSCSSEEEEE-SSSSEEEEESCBCSSSCB
T ss_pred             HHHHHHccCcccCCcCCCCEEEEE-ECCEEEEEecCcCchHHH
Confidence            3344555554    0137777777 599999988888776543

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=86.78  E-value=0.96  Score=38.54  Aligned_cols=79  Identities=8%  Similarity=-0.028  Sum_probs=50.5

Q ss_pred             CCceEEEEEeeeccchHHHhhhcchhHH------hh-ccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccc
Q 024610          129 IPKVSLVCLTFRASSQAMVDSWSSPFFE------AF-SDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVL  201 (265)
Q Consensus       129 ~gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~-~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l  201 (265)
                      .|++.||-++         ++||.+|..      .+ ...+++.++.|++. +.                          
T Consensus       119 ~~k~vvV~F~---------a~wC~~C~~l~p~l~~la~~~~~v~f~~vd~~-~~--------------------------  162 (217)
T 2trc_P          119 KVTTIVVNIY---------EDGVRGCDALNSSLECLAAEYPMVKFCKIRAS-NT--------------------------  162 (217)
T ss_dssp             TTCEEEEEEE---------CTTSTTHHHHHHHHHHHHTTCTTSEEEEEEHH-HH--------------------------
T ss_pred             CCcEEEEEEE---------CCCCccHHHHHHHHHHHHHHCCCeEEEEEECC-cH--------------------------
Confidence            3577777666         899999873      22 33467778877764 10                          


Q ss_pred             cceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCH-------HHHHHHHHHH
Q 024610          202 QRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATP-------EELSSLLSCT  258 (265)
Q Consensus       202 ~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~-------~E~e~L~k~~  258 (265)
                                  ++-+.+++.+  +|-++++. +|++...-.|..+.       ++++.+.+-.
T Consensus       163 ------------~l~~~~~i~~--~PTl~~~~-~G~~v~~~~G~~~~~g~~~~~~~Le~~L~~~  211 (217)
T 2trc_P          163 ------------GAGDRFSSDV--LPTLLVYK-GGELISNFISVAEQFAEDFFAADVESFLNEY  211 (217)
T ss_dssp             ------------TCSTTSCGGG--CSEEEEEE-TTEEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred             ------------HHHHHCCCCC--CCEEEEEE-CCEEEEEEeCCcccCcccCCHHHHHHHHHHc
Confidence                        0112234544  77777776 99998888887664       7777665543

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=85.15  E-value=9.1  Score=31.42  Aligned_cols=41  Identities=17%  Similarity=0.133  Sum_probs=28.4

Q ss_pred             hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610          212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS  256 (265)
Q Consensus       212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k  256 (265)
                      ..++-+.+|+.-  ++.+++++ +|++. .-.|..+.+++.....
T Consensus        78 ~~~l~~~~~v~~--~Pt~~~~~-~g~~~-~~~g~~~~~~l~~~i~  118 (241)
T 3idv_A           78 ASVLASRFDVSG--YPTIKILK-KGQAV-DYEGSRTQEEIVAKVR  118 (241)
T ss_dssp             CHHHHHHTTCCS--SSEEEEEE-TTEEE-ECCSCSCHHHHHHHHH
T ss_pred             CHHHHHhcCCCc--CCEEEEEc-CCCcc-cccCcccHHHHHHHHh
Confidence            355777788875  88888888 45544 3678888887765543

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=84.92  E-value=1.6  Score=29.88  Aligned_cols=35  Identities=23%  Similarity=0.285  Sum_probs=22.2

Q ss_pred             HHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610          214 YFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL  255 (265)
Q Consensus       214 ~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~  255 (265)
                      ++.+.+|+..  +|-+++   +|++|+  .|..+++++..+.
T Consensus        46 ~~~~~~~v~~--~Pt~~~---~G~~~~--~G~~~~~~l~~~l   80 (85)
T 1nho_A           46 EKAIEYGLMA--VPAIAI---NGVVRF--VGAPSREELFEAI   80 (85)
T ss_dssp             GGGGGTCSSC--SSEEEE---TTTEEE--ECSSCCHHHHHHH
T ss_pred             HHHHhCCcee--eCEEEE---CCEEEE--ccCCCHHHHHHHH
Confidence            3445667764  887777   788854  4555666665443

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=84.73  E-value=1.7  Score=38.02  Aligned_cols=36  Identities=6%  Similarity=-0.010  Sum_probs=24.9

Q ss_pred             CCceEEEEEeeeccchHHHhhhcchhHH------hh-ccCCCeeEEEEeccc
Q 024610          129 IPKVSLVCLTFRASSQAMVDSWSSPFFE------AF-SDSKNVHLYEVSFID  173 (265)
Q Consensus       129 ~gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~-~~~~~vqiv~In~~e  173 (265)
                      .|++.||-|+         ++||.||..      .+ ...+++.++.|++.+
T Consensus       132 ~~k~VvV~Fy---------a~wC~~Ck~l~p~l~~La~~~~~v~f~kVd~d~  174 (245)
T 1a0r_P          132 KITTIVVHIY---------EDGIKGCDALNSSLICLAAEYPMVKFCKIKASN  174 (245)
T ss_dssp             TTCEEEEEEE---------CTTSTTHHHHHHHHHHHHHHCTTSEEEEEEHHH
T ss_pred             CCCEEEEEEE---------CCCChHHHHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            3678888666         999999873      11 344668888887644

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=84.37  E-value=8  Score=30.89  Aligned_cols=40  Identities=3%  Similarity=-0.163  Sum_probs=29.8

Q ss_pred             HHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610          214 YFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS  256 (265)
Q Consensus       214 ~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k  256 (265)
                      ++-..+||..  ++-+.|.. +|++.+.-.|..+.++++...+
T Consensus        80 ~la~~ygV~s--iPTlilFk-dG~~v~~~vG~~~k~~l~~~l~  119 (137)
T 2qsi_A           80 GLMARFGVAV--CPSLAVVQ-PERTLGVIAKIQDWSSYLAQIG  119 (137)
T ss_dssp             HHHHHHTCCS--SSEEEEEE-CCEEEEEEESCCCHHHHHHHHH
T ss_pred             HHHHHcCCcc--CCEEEEEE-CCEEEEEEeCCCCHHHHHHHHH
Confidence            3455666665  77677775 9999999999999887765543

>4h86_A Peroxiredoxin type-2; oxidoreductase; 2.00A {Saccharomyces cerevisiae} PDB: 4dsq_A 4dsr_A 4dss_A

Probab=84.02  E-value=2.6  Score=36.07  Aligned_cols=85  Identities=9%  Similarity=0.108  Sum_probs=48.7

Q ss_pred             HHhhhcchhHHhhccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCc
Q 024610          146 MVDSWSSPFFEAFSDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLL  225 (265)
Q Consensus       146 ~~~sw~~p~~e~~~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~  225 (265)
                      ++-.|.+.+.+.+.....-++|=|++.|.+.+.     .|     .+....+.   ...+...-+.+-++-++||+....
T Consensus        89 hlPgf~~~~d~~~k~kGvd~I~ciSVND~FVm~-----AW-----~k~~~~~~---~~~i~~laD~~~eftkalGl~~~~  155 (199)
T 4h86_A           89 HIPGYINYLDELVKEKEVDQVIVVTVDNPFANQ-----AW-----AKSLGVKD---TTHIKFASDPGCAFTKSIGFELAV  155 (199)
T ss_dssp             THHHHHHHHHHHHHHSCCCEEEEEESSCHHHHH-----HH-----HHHTTCCC---CSSEEEEECGGGHHHHHTTCEEEE
T ss_pred             hChHHHHHHHHHHHhcCCcEEEEEEcCCHHHHH-----HH-----HHHhcccc---cccccccCCcchHHHHhcCceeec
Confidence            333444444333344433479999999976522     22     33333210   112222224467899999986432


Q ss_pred             -------ccEEEEEeCCCcEEEcccC
Q 024610          226 -------TGYIFLLDKFGRIRWQGFG  244 (265)
Q Consensus       226 -------vGYVyLVD~~grIRWagsG  244 (265)
                             -=|++||| +|+|.+..--
T Consensus       156 ~~gg~RS~Rya~IVd-DGvV~~~~vE  180 (199)
T 4h86_A          156 GDGVYWSGRWAMVVE-NGIVTYAAKE  180 (199)
T ss_dssp             ETTEEEECSEEEEEE-TTEEEEEEEC
T ss_pred             CCCcceeeEEEEEEE-CCEEEEEEEe
Confidence                   24899999 9999988654

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=82.37  E-value=0.99  Score=37.46  Aligned_cols=36  Identities=8%  Similarity=0.206  Sum_probs=25.8

Q ss_pred             CceEEEEEeeeccchHHHhhhcchhH------HhhccC--CCeeEEEEecccc
Q 024610          130 PKVSLVCLTFRASSQAMVDSWSSPFF------EAFSDS--KNVHLYEVSFIDS  174 (265)
Q Consensus       130 gKvSIV~l~~~~~gq~~~~sw~~p~~------e~~~~~--~~vqiv~In~~e~  174 (265)
                      +++.||-++         ++||.||.      +.+.++  ..+.++.|+++|+
T Consensus        41 ~k~VVVdF~---------A~WCgPCk~m~PvleelA~e~~~~v~f~kVDVDe~   84 (160)
T 2av4_A           41 ERLVCIRFG---------HDYDPDCMKMDELLYKVADDIKNFCVIYLVDITEV   84 (160)
T ss_dssp             SSEEEEEEE---------CTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTC
T ss_pred             CCEEEEEEE---------CCCChhHHHHHHHHHHHHHHccCCcEEEEEECCCC
Confidence            578888666         99999986      333222  3488999998884

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=81.90  E-value=9.1  Score=25.45  Aligned_cols=36  Identities=14%  Similarity=0.116  Sum_probs=27.1

Q ss_pred             hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCC-CHHHHHHH
Q 024610          212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMA-TPEELSSL  254 (265)
Q Consensus       212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~a-t~~E~e~L  254 (265)
                      ..++.+.+|+..  +|-+++   +|++++.  |.. +.+++..+
T Consensus        39 ~~~~~~~~~v~~--~Pt~~~---~G~~~~~--G~~~~~~~l~~~   75 (77)
T 1ilo_A           39 EMDQILEAGLTA--LPGLAV---DGELKIM--GRVASKEEIKKI   75 (77)
T ss_dssp             SHHHHHHHTCSS--SSCEEE---TTEEEEC--SSCCCHHHHHHH
T ss_pred             CHHHHHHCCCCc--CCEEEE---CCEEEEc--CCCCCHHHHHHH
Confidence            456677888875  887777   8999988  775 88887654

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=80.56  E-value=10  Score=32.21  Aligned_cols=37  Identities=11%  Similarity=0.137  Sum_probs=26.0

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS  256 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k  256 (265)
                      .++.+.+++.-  +|-+|+   +|+++  ..|..+.+++.....
T Consensus       186 ~~~~~~~~V~~--vPt~~i---~G~~~--~~G~~~~~~l~~~l~  222 (243)
T 2hls_A          186 PDIADKYGVMS--VPSIAI---NGYLV--FVGVPYEEDFLDYVK  222 (243)
T ss_dssp             HHHHHHTTCCS--SSEEEE---TTEEE--EESCCCHHHHHHHHH
T ss_pred             HHHHHHcCCee--eCeEEE---CCEEE--EeCCCCHHHHHHHHH
Confidence            45667777774  888887   78887  567777777655443

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=80.35  E-value=4.7  Score=35.64  Aligned_cols=22  Identities=0%  Similarity=-0.046  Sum_probs=15.9

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCc
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGR  237 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~gr  237 (265)
                      .++-+.+||..  +|-+++++ +|+
T Consensus        81 ~~l~~~~~I~~--~Pt~~~~~-~g~  102 (298)
T 3ed3_A           81 KALCAKYDVNG--FPTLMVFR-PPK  102 (298)
T ss_dssp             HHHHHHTTCCB--SSEEEEEE-CCC
T ss_pred             HHHHHhCCCCc--cceEEEEE-CCc
Confidence            55667778875  78888888 465

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=80.12  E-value=4  Score=32.17  Aligned_cols=39  Identities=15%  Similarity=0.174  Sum_probs=26.3

Q ss_pred             HHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610          214 YFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL  255 (265)
Q Consensus       214 ~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~  255 (265)
                      ++-+.+||.-  +|-++++ .+|++...-.|..+.+++....
T Consensus        82 ~la~~~~V~~--iPT~~~f-k~G~~v~~~~G~~~~~~l~~~i  120 (142)
T 2es7_A           82 AIGDRFNVRR--FPATLVF-TDGKLRGALSGIHPWAELLTLM  120 (142)
T ss_dssp             HHHHTTTCCS--SSEEEEE-SCC----CEESCCCHHHHHHHH
T ss_pred             HHHHhcCCCc--CCeEEEE-eCCEEEEEEeCCCCHHHHHHHH
Confidence            3556677775  8888888 7999999999998887765544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	265
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	99.29
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	99.21
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	99.14
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	99.11
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	99.09
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	99.06
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	99.05
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	98.94
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	98.92
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	98.91
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	98.71
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	98.69
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	98.64
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	98.59
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	98.5
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	98.5
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	98.49
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	98.47
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	98.4
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	98.38
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	98.3
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	98.27
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	98.19
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	98.18
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	98.13
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	98.12
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	98.05
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	97.96
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	97.89
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	97.7
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	97.67
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	97.67
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	97.33
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	97.29
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	97.07
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	96.74
d1tp9a1	162	Plant peroxiredoxin {Western balsam poplar(Populus	96.68
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	96.67
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	96.14
d1hd2a_	161	Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606	96.06
d1nm3a2	163	N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus	95.73
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	95.61
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	95.6
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	95.54
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	95.51
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	95.27
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	95.12
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	94.69
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	94.4
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	94.26
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	94.26
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	94.21
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	94.2
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	94.03
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	94.0
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	93.64
d1xiya1	179	1-Cys peroxiredoxin {Malaria parasite (Plasmodium	88.86
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	87.56
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	84.72
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	83.19
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	81.77
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	80.97

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.29  E-value=2.4e-11  Score=95.57  Aligned_cols=123  Identities=13%  Similarity=0.196  Sum_probs=90.3

Q ss_pred             cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCCe
Q 024610           95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKNV  164 (265)
Q Consensus        95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~v  164 (265)
                      +..+|+|++.+++|+++++.+            ++||++||.++         ++||.+|..          .+.+ .++
T Consensus         2 G~~~P~f~l~~~~G~~~~l~~------------~~gk~~li~f~---------~~~C~~C~~~~~~l~~~~~~~~~-~~~   59 (137)
T d1st9a_           2 GSDAPNFVLEDTNGKRIELSD------------LKGKGVFLNFW---------GTWCEPCKKEFPYMANQYKHFKS-QGV   59 (137)
T ss_dssp             CEECCCCEEECTTSCEEEGGG------------GTTSEEEEEEE---------CTTCHHHHHHHHHHHHHHHHHGG-GTE
T ss_pred             cCcCCCeEEECCCcCEEeHHH------------hCCCEEEEEEe---------eccccceeecccccccccccccc-ccc
Confidence            356899999999999998653            36899998776         889998862          2222 379


Q ss_pred             eEEEEecccchhhccccchHHHHHHHHh-cCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEccc
Q 024610          165 HLYEVSFIDSWLLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGF  243 (265)
Q Consensus       165 qiv~In~~e~~lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWags  243 (265)
                      ++|.||+.++.-  .  ++.+    +.+ +++.        .+ ..+....+-+.+|+.-  ++.+||||++|+|+|...
T Consensus        60 ~~v~i~~~~~~~--~--~~~~----~~~~~~~~--------~~-~~d~~~~~~~~~~v~~--~P~~~liD~~G~i~~~~~  120 (137)
T d1st9a_          60 EIVAVNVGESKI--A--VHNF----MKSYGVNF--------PV-VLDTDRQVLDAYDVSP--LPTTFLINPEGKVVKVVT  120 (137)
T ss_dssp             EEEEEEESCCHH--H--HHHH----HHHTTCCS--------CE-EEETTSHHHHHTTCCS--SCEEEEECTTSEEEEEEE
T ss_pred             ccccccccchhh--h--HHHH----HHHcCCCc--------cc-cccccchhhhhhhccc--cceEEEECCCCEEEEEEE
Confidence            999999877432  1  2333    222 2221        12 2355677889999875  899999999999999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 024610          244 GMATPEELSSLLSCT  258 (265)
Q Consensus       244 G~at~~E~e~L~k~~  258 (265)
                      |+.++++++.+.+.+
T Consensus       121 G~~~~~~~~~~l~~l  135 (137)
T d1st9a_         121 GTMTESMIHDYMNLI  135 (137)
T ss_dssp             SCCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHhh
Confidence            999998887766543

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.21  E-value=1.4e-10  Score=90.66  Aligned_cols=118  Identities=10%  Similarity=0.107  Sum_probs=84.4

Q ss_pred             CCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH-------hhccCCCeeEEEEec
Q 024610           99 PDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE-------AFSDSKNVHLYEVSF  171 (265)
Q Consensus        99 Pnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e-------~~~~~~~vqiv~In~  171 (265)
                      ++|++++++|+++++.+            ++||++||.+|         ++||.||.+       ..++.+++.++-|+.
T Consensus         6 ~df~~~~~~G~~~~l~~------------~~Gk~vll~fw---------a~wC~~C~~~~p~l~~l~~~~~~~~~v~v~~   64 (134)
T d1zzoa1           6 LQFSAKTLDGHDFHGES------------LLGKPAVLWFW---------APWCPTCQGEAPVVGQVAASHPEVTFVGVAG   64 (134)
T ss_dssp             GCCEEEBTTSCEEEGGG------------GTTSCEEEEEE---------CTTCHHHHHHHHHHHHHHHHCTTSEEEEEEC
T ss_pred             cceeEEcCCCCEEeHHH------------hCCCEEEEEec---------ccccCcccccchhhHHHHhhhcccccccccc
Confidence            36889999999998653            36999999777         999999973       235567899999988


Q ss_pred             ccchhhccccchHHHHHHHHh-cCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHH
Q 024610          172 IDSWLLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEE  250 (265)
Q Consensus       172 ~e~~lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E  250 (265)
                      .+..- .   .+.+    +++ +++.     . .+  ..+....+-+.+|+.-  ++++||||++|+|++. .|..+++|
T Consensus        65 ~d~~~-~---~~~~----~~~~~~~~-----~-~~--l~D~~~~~~~~~~v~~--~P~~~iiD~~G~i~~~-~g~~~~~~  125 (134)
T d1zzoa1          65 LDQVP-A---MQEF----VNKYPVKT-----F-TQ--LADTDGSVWANFGVTQ--QPAYAFVDPHGNVDVV-RGRMSQDE  125 (134)
T ss_dssp             SSCHH-H---HHHH----HHHTTCTT-----S-EE--EECTTCHHHHHTTCCS--SSEEEEECTTCCEEEE-ESCCCHHH
T ss_pred             cccch-h---HHHH----HHhcCCcc-----e-eE--EeeccchHHHhcCCCc--cCeEEEECCCCeEEEE-ECCCCHHH
Confidence            76421 1   1222    222 2221     1 12  2466678889999875  9999999999999995 58888888


Q ss_pred             HHHHHH
Q 024610          251 LSSLLS  256 (265)
Q Consensus       251 ~e~L~k  256 (265)
                      ++...+
T Consensus       126 l~~~i~  131 (134)
T d1zzoa1         126 LTRRVT  131 (134)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766544

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.14  E-value=2.5e-10  Score=89.58  Aligned_cols=117  Identities=7%  Similarity=-0.026  Sum_probs=84.6

Q ss_pred             CCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH-------hhccCCCeeEEEEec
Q 024610           99 PDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE-------AFSDSKNVHLYEVSF  171 (265)
Q Consensus        99 Pnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e-------~~~~~~~vqiv~In~  171 (265)
                      |+|++++++|+++++.+            ++||++||-+|         ++||.+|..       ...+.++++++.|+.
T Consensus         5 ~~f~~~~~~G~~~~l~~------------~~Gk~vll~F~---------a~wC~~C~~~~p~l~~~~~~~~~v~~v~v~~   63 (134)
T d1lu4a_           5 LQFTATTLSGAPFDGAS------------LQGKPAVLWFW---------TPWCPFCNAEAPSLSQVAAANPAVTFVGIAT   63 (134)
T ss_dssp             GCCEEEBTTSCEEEGGG------------GTTSCEEEEEE---------CTTCHHHHHHHHHHHHHHHHCTTSEEEEEEC
T ss_pred             CcceeECCCCCEEcHHH------------hCCCEEEEEEe---------ecccCCceecchhHHHHhhhhcccccccccc
Confidence            68899999999998653            36999999766         899999873       234568999999999


Q ss_pred             ccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEc--ccCCCCHH
Q 024610          172 IDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQ--GFGMATPE  249 (265)
Q Consensus       172 ~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWa--gsG~at~~  249 (265)
                      .++.-  .  ++.+    +.+.-..       ..+ ..+....+.+++|+.-  ++++||||++|+||+.  +.|..+++
T Consensus        64 ~~~~~--~--~~~~----~~~~~~~-------~p~-~~d~~~~~~~~~~v~~--~P~~~lid~~G~i~~v~~~~g~~~~~  125 (134)
T d1lu4a_          64 RADVG--A--MQSF----VSKYNLN-------FTN-LNDADGVIWARYNVPW--QPAFVFYRADGTSTFVNNPTAAMSQD  125 (134)
T ss_dssp             SSCHH--H--HHHH----HHHHTCC-------SEE-EECTTSHHHHHTTCCS--SSEEEEECTTSCEEEECCSSSCCCHH
T ss_pred             ccchh--h--hhhh----hhhhccc-------cce-eeCchHHHHHHcCCCc--CCEEEEEeCCCeEEEEeccCCCCCHH
Confidence            77532  1  3333    2222111       122 2466678999999885  9999999999999875  56777877


Q ss_pred             HHHHH
Q 024610          250 ELSSL  254 (265)
Q Consensus       250 E~e~L  254 (265)
                      |+..-
T Consensus       126 ~l~~~  130 (134)
T d1lu4a_         126 ELSGR  130 (134)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76543

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=2.2e-10  Score=89.96  Aligned_cols=110  Identities=13%  Similarity=0.146  Sum_probs=77.5

Q ss_pred             CCceEEEEEeeeccchHHHhhhcchhHHhhc-----cCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccc
Q 024610          129 IPKVSLVCLTFRASSQAMVDSWSSPFFEAFS-----DSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQR  203 (265)
Q Consensus       129 ~gKvSIV~l~~~~~gq~~~~sw~~p~~e~~~-----~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~  203 (265)
                      +||+.||-+|         +|||.||.+...     ...+++++-|++.++....    ...   ..+.+...      .
T Consensus        19 ~Gk~vvl~Fw---------atWC~pC~~e~p~l~~~~~~~~~vi~i~~~~~~~~~----~~~---~~~~~~~~------~   76 (136)
T d1z5ye1          19 QGKPVLLNVW---------ATWCPTSRAEHQYLNQLSAQGIRVVGMNYKDDRQKA----ISW---LKELGNPY------A   76 (136)
T ss_dssp             SSSCEEEEEE---------CTTCHHHHHHHHHHHHHHHTTCCEEEEEESCCHHHH----HHH---HHHHCCCC------S
T ss_pred             CCCEEEEEEE---------cCcCCCcCccccchhhhhhhhhhhcccccccchhhh----HHH---HHHcCCcc------c
Confidence            7999999777         999999984321     1246889999987754311    111   11222221      1


Q ss_pred             eeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHH-HHHHHHHhhhcC
Q 024610          204 QIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELS-SLLSCTSLLLEG  264 (265)
Q Consensus       204 ~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e-~L~k~~~~Ll~e  264 (265)
                      .+  ..+....+.+.+|+.-  +|.+||||++|+||+...|+.++++++ .+.+.+..|++|
T Consensus        77 ~~--~~d~~~~~~~~~~v~~--~P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~ll~kl~~e  134 (136)
T d1z5ye1          77 LS--LFDGDGMLGLDLGVYG--APETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWEKYSKE  134 (136)
T ss_dssp             EE--EEESSCHHHHHHTCCS--BSEEEEECTTSCEEEEEESCCCHHHHHHHTHHHHHHHHHT
T ss_pred             ee--ecccchhHHHhcccCC--cceEEEEcCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHHh
Confidence            22  2456677889999875  999999999999999999999998875 555567777766

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.09  E-value=1.1e-09  Score=86.70  Aligned_cols=108  Identities=23%  Similarity=0.254  Sum_probs=75.3

Q ss_pred             cCCCceEEEEEeeeccchHHHhhhcchhHH------hhccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCcc
Q 024610          127 AAIPKVSLVCLTFRASSQAMVDSWSSPFFE------AFSDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENV  200 (265)
Q Consensus       127 ~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~  200 (265)
                      .++||++||.+|         ++||.||..      .+.+..+++++-|++.+....    ...+ ...+  +..     
T Consensus        28 ~~kgK~vll~fw---------a~wC~~C~~~~p~l~~l~~~~~~~~~~i~~~~~~~~----~~~~-~~~~--~~~-----   86 (144)
T d1knga_          28 AFKGKVSLVNVW---------ASWCVPCHDEAPLLTELGKDKRFQLVGINYKDAADN----ARRF-LGRY--GNP-----   86 (144)
T ss_dssp             GGTTSCEEEEEE---------CTTCHHHHHHHHHHHHHTTCTTSEEEEEEESCCHHH----HHHH-HHHH--CCC-----
T ss_pred             HhCCCEEEEEee---------ccccccccccCchhhhhhhccCceeEEEEeeechHH----HHHH-HHHc--CCc-----
Confidence            458999999877         999999973      345556789999998765431    1221 1111  111     


Q ss_pred             ccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHH-HHHHHHh
Q 024610          201 LQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSS-LLSCTSL  260 (265)
Q Consensus       201 l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~-L~k~~~~  260 (265)
                         ...+..+....+.+.+|+.-  ++.+||+|++|+|+|...|..+.++++. +.+.+..
T Consensus        87 ---~~~~~~d~~~~~~~~~~v~~--~P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~~l~k  142 (144)
T d1knga_          87 ---FGRVGVDANGRASIEWGVYG--VPETFVVGREGTIVYKLVGPITPDNLRSVLLPQMEK  142 (144)
T ss_dssp             ---CSEEEEETTSHHHHHTTCCS--SCEEEEECTTSBEEEEEESCCCHHHHHHTHHHHHHH
T ss_pred             ---cccccccccchhhhhcCccc--cceEEEEcCCCeEEEEEeCCCCHHHHHHHHHHHHHH
Confidence               11122455677999999874  9999999999999999999999988754 5444443

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=99.06  E-value=3.5e-10  Score=94.54  Aligned_cols=136  Identities=13%  Similarity=0.081  Sum_probs=86.1

Q ss_pred             cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCCe
Q 024610           95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKNV  164 (265)
Q Consensus        95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~v  164 (265)
                      ....|+|.+.+++|+++++.+            ++||+.||.+|         ++||.||..          .++  .++
T Consensus         9 G~~aPdF~l~d~~G~~~~Lsd------------~kGk~vvl~Fw---------atwCp~C~~~~p~l~~l~~~y~--~~v   65 (187)
T d2cvba1           9 ESPLIDAELPDPRGGRYRLSQ------------FHEPLLAVVFM---------CNHCPYVKGSIGELVALAERYR--GKV   65 (187)
T ss_dssp             TCBCCCCEEECTTSCEEEGGG------------CCSSEEEEEEE---------CSSCHHHHTTHHHHHHHHHHTT--TTE
T ss_pred             CCccCccEeecCCCCEEEHHH------------hCCCeEEEEEe---------CCCCccchhhhhhhhhhhhhcc--ccc
Confidence            446799999999999998753            36899887554         999998862          232  358


Q ss_pred             eEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccC
Q 024610          165 HLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFG  244 (265)
Q Consensus       165 qiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG  244 (265)
                      ++|-|+..+......  -..--+....+..+.      ... +.++....+.+++|+.-  ++.+||+|++|+|+|+|.=
T Consensus        66 ~~v~i~snd~~~~~~--~~~e~~~~~~~~~~~------~~p-~l~D~~~~~~~~~~v~~--~P~~~liD~~G~i~y~G~i  134 (187)
T d2cvba1          66 AFVGINANDYEKYPE--DAPEKMAAFAEEHGI------FFP-YLLDETQEVAKAYRALR--TPEVFLFDERRLLRYHGRV  134 (187)
T ss_dssp             EEEEEECCCTTTCGG--GSHHHHHHHHHHHTC------CSC-EEECSSSHHHHHTTCCE--ESEEEEECTTCBEEEEECS
T ss_pred             eeeeeeccccccccc--cchHHHHHHHHHhCC------cce-eeechhhhhcccccccc--eeeEEEEcCCCeEEEEeee
Confidence            999998654322111  000011111111111      111 23577788999999985  9999999999999998752


Q ss_pred             CC---C--HHHHHHHHHHHHhhhcC
Q 024610          245 MA---T--PEELSSLLSCTSLLLEG  264 (265)
Q Consensus       245 ~a---t--~~E~e~L~k~~~~Ll~e  264 (265)
                      ..   .  ......|..+++.||+.
T Consensus       135 dd~~~~~~~~~~~~L~~Ai~~ll~g  159 (187)
T d2cvba1         135 NDNPKDPSKVQSHDLEAAIEALLRG  159 (187)
T ss_dssp             SSCTTCGGGCCCCHHHHHHHHHHTT
T ss_pred             cCCCCCCCCCCHHHHHHHHHHHHcC
Confidence            21   1  11123466777777764

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.05  E-value=9.8e-10  Score=89.83  Aligned_cols=139  Identities=19%  Similarity=0.110  Sum_probs=86.0

Q ss_pred             ccccccccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh------h---
Q 024610           88 IIIPALAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA------F---  158 (265)
Q Consensus        88 ~l~ka~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~------~---  158 (265)
                      .+.........|+|.+++++|+++++.+            ++||++||.++         .+||.+|...      +   
T Consensus        26 ~~~~~~~~~~~Pdf~l~d~~G~~v~L~~------------~kGK~vll~F~---------a~wC~~C~~~~~~l~~~~~~   84 (176)
T d1jfua_          26 ALTMASAPLKLPDLAFEDADGKPKKLSD------------FRGKTLLVNLW---------ATWCVPCRKEMPALDELQGK   84 (176)
T ss_dssp             TCEECCSCCBCCCCEEECTTSCEEEGGG------------GTTSEEEEEEE---------CTTCHHHHHHHHHHHHHHHH
T ss_pred             hccccCCCCcCCCeEEECCCcCEEeHHH------------hCCCEEEEEec---------cCcccchHHHHHhhhhcccc
Confidence            3344455667899999999999998653            47999998766         8999998621      1   


Q ss_pred             ccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccC--CcccEEEEEeCCC
Q 024610          159 SDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILN--LLTGYIFLLDKFG  236 (265)
Q Consensus       159 ~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N--~~vGYVyLVD~~g  236 (265)
                      ...+++.+|-|+++..-. ..  ++.+    +.+ .+..    ... + ..+....+-+.++...  ..++++||||++|
T Consensus        85 ~~~~~~~vv~vs~d~~~~-~~--~~~~----~~~-~~~~----~~~-~-~~d~~~~~~~~~~~~~~v~~~P~~~lID~~G  150 (176)
T d1jfua_          85 LSGPNFEVVAINIDTRDP-EK--PKTF----LKE-ANLT----RLG-Y-FNDQKAKVFQDLKAIGRALGMPTSVLVDPQG  150 (176)
T ss_dssp             HCBTTEEEEEEECCCSCT-TH--HHHH----HHH-TTCC----TTC-C-EECTTCHHHHHHHTTTCCSSSSEEEEECTTS
T ss_pred             ccccccccccccccccch-hh--hhhh----Hhh-hCCc----cee-e-eecchhHHHHHHhhhccCCCCCeEEEEcCCC
Confidence            123678999999763211 11  2333    111 1211    011 1 1344444444443221  1368999999999


Q ss_pred             cEEEcccCCCCHHHHHHHHHHHHhhh
Q 024610          237 RIRWQGFGMATPEELSSLLSCTSLLL  262 (265)
Q Consensus       237 rIRWagsG~at~~E~e~L~k~~~~Ll  262 (265)
                      +||+...|+.+.++ +.+.+.++.|+
T Consensus       151 ~I~~~~~G~~~~~~-~e~~~~l~al~  175 (176)
T d1jfua_         151 CEIATIAGPAEWAS-EDALKLIRAAT  175 (176)
T ss_dssp             BEEEEEESCCCTTS-HHHHHHHHHHH
T ss_pred             EEEEEEECCCCCCh-HHHHHHHHHhc
Confidence            99999999866544 44555555554

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=98.94  E-value=4.1e-09  Score=82.75  Aligned_cols=122  Identities=13%  Similarity=0.047  Sum_probs=80.9

Q ss_pred             eeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH------hh-c--cCCCeeEEEEecc
Q 024610          102 DVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE------AF-S--DSKNVHLYEVSFI  172 (265)
Q Consensus       102 ~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~-~--~~~~vqiv~In~~  172 (265)
                      ++++.+|+.+++..            ++||+.||-+|         ++||.+|..      .+ .  ...+++++.|+..
T Consensus         7 ~l~~~~~~~~~l~~------------~~gk~vvl~F~---------a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~   65 (143)
T d2fy6a1           7 TLKTADNRPASVYL------------KKDKPTLIKFW---------ASWCPLCLSELGQTEKWAQDAKFSSANLITVASP   65 (143)
T ss_dssp             TCEETTSCBGGGGC------------CTTSCEEEEEE---------CTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECT
T ss_pred             eeECCCCCEeeHHH------------hCCCEEEEEEE---------CCCCccccccCcchhhhhhhhccCCcEEEEEeee
Confidence            35678899987653            46899888666         999999973      22 2  2246889988875


Q ss_pred             cchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHH
Q 024610          173 DSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELS  252 (265)
Q Consensus       173 e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e  252 (265)
                      .......  .. -+....+..-..      ...+ ..+....+-+.+|+.-  ++.+||||++|+||+...|+.++++++
T Consensus        66 ~~~~~~~--~~-~~~~~~~~~~~~------~~~~-~~D~~~~~~~~~~v~~--~P~~~liD~~G~i~~~~~G~~~~~~~~  133 (143)
T d2fy6a1          66 GFLHEKK--DG-DFQKWYAGLNYP------KLPV-VTDNGGTIAQSLNISV--YPSWALIGKDGDVQRIVKGSINEAQAL  133 (143)
T ss_dssp             TSTTCCC--TT-HHHHHHTTSCCT------TSCE-EECTTCHHHHHTTCCS--SSEEEEECTTSCEEEEEESCCCHHHHH
T ss_pred             ecccccc--hh-hhhhhhhhcCCc------cccc-ccccchHHHHHcCCCc--cCEEEEECCCCEEEEEEECCCCHHHHH
Confidence            4322111  11 111112221111      1112 2466788999999974  999999999999999999999988876


Q ss_pred             HHHH
Q 024610          253 SLLS  256 (265)
Q Consensus       253 ~L~k  256 (265)
                      .+.+
T Consensus       134 ~~l~  137 (143)
T d2fy6a1         134 ALIR  137 (143)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6654

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=98.92  E-value=3.6e-09  Score=83.55  Aligned_cols=124  Identities=15%  Similarity=0.095  Sum_probs=81.5

Q ss_pred             cCCCceeeC--CCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh------h-cc-CCCeeE
Q 024610           97 KFPDLDVSY--SDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA------F-SD-SKNVHL  166 (265)
Q Consensus        97 yFPnl~~~~--l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~------~-~~-~~~vqi  166 (265)
                      ..|++++.+  ++|+.+...            .+.||++||.+|         ++||.||.+.      + +. ...+++
T Consensus         6 ~aP~~~~~~~~~ng~~~~~~------------~~~~k~vvl~f~---------a~~C~~C~~~~p~l~~l~~~~~~~~~~   64 (143)
T d2b5xa1           6 PMPELTGEKAWLNGEVTREQ------------LIGEKPTLIHFW---------SISCHLCKEAMPQVNEFRDKYQDQLNV   64 (143)
T ss_dssp             BCCCCCCCSEEESCCCCHHH------------HTTTSCEEEEEE---------CTTCHHHHHHHHHHHHHHHHHTTTSEE
T ss_pred             cCCCCcCCccCcCCeEecHH------------HhCCCEEEEEEE---------cCCCcchhhhhhhhhhhhhhhhccccc
Confidence            468887554  577665433            346899998666         8999998732      2 11 246899


Q ss_pred             EEEecccchhhcc-ccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCC
Q 024610          167 YEVSFIDSWLLCR-SPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGM  245 (265)
Q Consensus       167 v~In~~e~~lk~~-~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~  245 (265)
                      |.|++.+.-.-.. ..++.+     .+..+.      .+.+ .++....+.+.+++..  ++++||||++|+|+|...|+
T Consensus        65 i~v~~~~~~~~~~~~~~~~~-----~~~~~~------~~p~-~~D~~~~~~~~~~v~~--~P~~~~id~~G~i~~~~~G~  130 (143)
T d2b5xa1          65 VAVHMPRSEDDLDPGKIKET-----AAEHDI------TQPI-FVDSDHALTDAFENEY--VPAYYVFDKTGQLRHFQAGG  130 (143)
T ss_dssp             EEEECCCSTTTSSHHHHHHH-----HHHTTC------CSCE-EECSSCHHHHHTCCCC--SSEEEEECTTCBEEEEEESC
T ss_pred             eeEEeeccccccchhhhhhH-----HHhhcc------Cccc-cccCccchHHHcCCCc--CCEEEEECCCCEEEEEEECC
Confidence            9998864321111 002222     222221      1222 2467778999999875  99999999999999999999


Q ss_pred             CCHHHHHHHH
Q 024610          246 ATPEELSSLL  255 (265)
Q Consensus       246 at~~E~e~L~  255 (265)
                      .+.++++...
T Consensus       131 ~~~~~l~~~l  140 (143)
T d2b5xa1         131 SGMKMLEKRV  140 (143)
T ss_dssp             STTHHHHHHH
T ss_pred             CCHHHHHHHH
Confidence            9888777543

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.91  E-value=1.1e-08  Score=81.50  Aligned_cols=133  Identities=13%  Similarity=0.116  Sum_probs=86.0

Q ss_pred             cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh-------hc--cCCCee
Q 024610           95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA-------FS--DSKNVH  165 (265)
Q Consensus        95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~-------~~--~~~~vq  165 (265)
                      +...|+|.+.+.+|+++++.+            ++|+..+|.++++       .+||.+|...       ..  ...+++
T Consensus         5 G~~aPdF~l~d~~G~~~slsd------------~~g~~~vvl~~~~-------~~~cp~C~~e~~~l~~~~~~~~~~~~~   65 (153)
T d1xvwa1           5 GATAPDFTLRDQNQQLVTLRG------------YRGAKNVLLVFFP-------LAFTGICQGELDQLRDHLPEFENDDSA   65 (153)
T ss_dssp             TSBCCCCEEECTTSCEEEGGG------------GTTTCEEEEEECS-------CTTSSHHHHHHHHHHHTGGGTSSSSEE
T ss_pred             cCCCcCeEEECCCCCEEeHHH------------HcCCCcEEEEecc-------cccccchhhhhhhhhhhhhhhcccccc
Confidence            456799999999999998653            3576666666766       7888877631       22  234799


Q ss_pred             EEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEE-cCChHHHHHHhcccCCcccE----EEEEeCCCcEEE
Q 024610          166 LYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYS-FGDHYYFRKELKILNLLTGY----IFLLDKFGRIRW  240 (265)
Q Consensus       166 iv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~-~g~~~~iRe~Lgi~N~~vGY----VyLVD~~grIRW  240 (265)
                      ++-|+.+.-.-     .+.+ .  -..+++        ..+.. .+....+.+++|+.+...|+    +||||++|+|||
T Consensus        66 vi~vs~d~~~~-----~~~~-~--~~~~~~--------~~~l~~~~~~~~~~~~ygv~~~~~g~~~r~tfvID~~G~I~~  129 (153)
T d1xvwa1          66 ALAISVGPPPT-----HKIW-A--TQSGFT--------FPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRF  129 (153)
T ss_dssp             EEEEESCCHHH-----HHHH-H--HHHTCC--------SCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEE
T ss_pred             cccccchhhhH-----HHHH-h--hhhccc--------eeEEecccccchhHHHhhhhhhccCceeeeEEEECCCCEEEE
Confidence            99999865321     2222 1  111222        11211 12246788999998777665    799999999999


Q ss_pred             cccCCC-CHHHHHHHHHHHHhhh
Q 024610          241 QGFGMA-TPEELSSLLSCTSLLL  262 (265)
Q Consensus       241 agsG~a-t~~E~e~L~k~~~~Ll  262 (265)
                      +..+.+ ...+...+.++++.|.
T Consensus       130 ~~~~~~~~~~~~~~~~~~L~aL~  152 (153)
T d1xvwa1         130 AEMKQPGEVRDQRLWTDALAALT  152 (153)
T ss_dssp             EEECCTTCCCCHHHHHHHHHHTC
T ss_pred             EEEeCCCcccCHHHHHHHHHhhc
Confidence            987543 3334556666666653

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=98.71  E-value=4.2e-08  Score=78.16  Aligned_cols=134  Identities=10%  Similarity=0.121  Sum_probs=86.8

Q ss_pred             cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh-------hc--cCCCee
Q 024610           95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA-------FS--DSKNVH  165 (265)
Q Consensus        95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~-------~~--~~~~vq  165 (265)
                      +...|+|++.+.+|+++++.+.          ..+||+.||.++ +       .+||.+|...       +.  ...+++
T Consensus         5 G~~aPdF~L~~~~G~~~~Lsd~----------~~~gk~vvl~f~-~-------~~~cp~C~~~~~~l~~~~~~~~~~~~~   66 (160)
T d2cx4a1           5 GEKAPDFTLPNQDFEPVNLYEV----------LKRGRPAVLIFF-P-------AAFSPVCTKELCTFRDKMAQLEKANAE   66 (160)
T ss_dssp             TSBCCCCEECCTTSCCEEHHHH----------HTTSSCEEEEEC-S-------CTTCHHHHHHHHHHHHTCTTTSTTCCE
T ss_pred             CCCCcCeEeECCCCCEEehHHH----------hhCCCEEEEEec-c-------cccCCchhhhhhhhhcccccccccccc
Confidence            4567999999999999986532          125898888653 2       6899988631       11  224689


Q ss_pred             EEEEecccchhhccccchHHHHHHHHh-cCCCCCccccceeEEEcCChHHHHHHhcccCCc--------ccEEEEEeCCC
Q 024610          166 LYEVSFIDSWLLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGDHYYFRKELKILNLL--------TGYIFLLDKFG  236 (265)
Q Consensus       166 iv~In~~e~~lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~--------vGYVyLVD~~g  236 (265)
                      +|.|+.++-..     .+.+    ..+ .++        ..+ ..+....+-+++|+....        .+-+||||++|
T Consensus        67 vv~is~d~~~~-----~~~~----~~~~~~~--------~~~-l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~flId~~G  128 (160)
T d2cx4a1          67 VLAISVDSPWC-----LKKF----KDENRLA--------FNL-LSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDG  128 (160)
T ss_dssp             EEEEESSCHHH-----HHHH----HHHHTCS--------SEE-EECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTS
T ss_pred             cccccccchhh-----hhhh----cccceee--------EEE-eecCCcchHHHcCccccccccccccceeeEEEEcCCC
Confidence            99999875332     1222    111 122        112 135567788888875421        34589999999


Q ss_pred             cEEEcccCCCCH--HHHHHHHHHHHhhhcC
Q 024610          237 RIRWQGFGMATP--EELSSLLSCTSLLLEG  264 (265)
Q Consensus       237 rIRWagsG~at~--~E~e~L~k~~~~Ll~e  264 (265)
                      +|||+..++...  .+.+.+.+.++.|+.|
T Consensus       129 ~I~~~~~~~~~~~~~~~~eil~~l~~l~~e  158 (160)
T d2cx4a1         129 TVAYKWVTDNPLNEPDYDEVVREANKIAGE  158 (160)
T ss_dssp             BEEEEEECSSTTCCCCHHHHHHHHHHHHTT
T ss_pred             EEEEEEEeCCCCCCCCHHHHHHHHHHHccc
Confidence            999987765332  3567777788777765

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.69  E-value=2e-07  Score=75.34  Aligned_cols=134  Identities=16%  Similarity=0.084  Sum_probs=86.0

Q ss_pred             cccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhH-------HhhccCCCee
Q 024610           93 LAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFF-------EAFSDSKNVH  165 (265)
Q Consensus        93 ~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~-------e~~~~~~~vq  165 (265)
                      ..+...|+|.+.+.+|+++++.+            ++||..||.+|-        ..||..|.       +.+.+..+++
T Consensus        17 ~vG~~aPdF~L~~~~g~~vsLsd------------~~gk~~vl~f~~--------~~~~p~C~~~~~~l~~~~~~~~~~~   76 (163)
T d1psqa_          17 QVGDKALDFSLTTTDLSKKSLAD------------FDGKKKVLSVVP--------SIDTGICSTQTRRFNEELAGLDNTV   76 (163)
T ss_dssp             CTTSBCCCCEEECTTSCEEEGGG------------GTTSEEEEEECS--------CTTSHHHHHHHHHHHHHTTTCTTEE
T ss_pred             CCCCCCCCeEEECCCCCEEehHH------------hCCcEEEEEecc--------ccccccchhhHHHHHHHHHhhcccc
Confidence            46778999999999999998653            468988886652        45555554       3445667899


Q ss_pred             EEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCccc----EEEEEeCCCcEEEc
Q 024610          166 LYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTG----YIFLLDKFGRIRWQ  241 (265)
Q Consensus       166 iv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vG----YVyLVD~~grIRWa  241 (265)
                      +|.|+.+...-     .+.+..   ..+.+.       ..++.-+...++-++.|+.....|    .+||||++|+|||+
T Consensus        77 vv~Is~d~~~~-----~~~~~~---~~~~~~-------~~~~~~~~~~~~~~~ygv~~~~~~~~~Ra~fvID~~G~I~y~  141 (163)
T d1psqa_          77 VLTVSMDLPFA-----QKRWCG---AEGLDN-------AIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYV  141 (163)
T ss_dssp             EEEEESSCHHH-----HHHHHH---HHTCTT-------SEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEE
T ss_pred             eEEEEeccHHH-----HHHHHH---HcCCcc-------eeeeccccchhHHHhheeecccccceeEEEEEECCCCEEEEE
Confidence            99999876432     122210   111221       112111223568888888765444    38999999999998


Q ss_pred             ccCCCCH--HHHHHHHHHHHhh
Q 024610          242 GFGMATP--EELSSLLSCTSLL  261 (265)
Q Consensus       242 gsG~at~--~E~e~L~k~~~~L  261 (265)
                      +-+....  .+.+.+.+.++.|
T Consensus       142 ~~~~~~~~~~~~~~il~alk~L  163 (163)
T d1psqa_         142 EYVDNINSEPNFEAAIAAAKAL  163 (163)
T ss_dssp             EECSBTTSCCCHHHHHHHHHHC
T ss_pred             EEcCCCCCCCCHHHHHHHHhcC
Confidence            7665333  3567777777654

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.64  E-value=4.9e-08  Score=76.44  Aligned_cols=107  Identities=11%  Similarity=0.137  Sum_probs=73.8

Q ss_pred             cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCCe
Q 024610           95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKNV  164 (265)
Q Consensus        95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~v  164 (265)
                      ..|+|++...+.+|+++++..            ++||+.||-+|         ++||.||..          .+....++
T Consensus         3 ~k~~P~~~~~~~~g~~v~l~~------------l~GK~vll~Fw---------a~wC~~C~~~~~~l~~l~~~~~~~~~~   61 (144)
T d1o8xa_           3 DKYLPGIEKLRRGDGEVEVKS------------LAGKLVFFYFS---------ASWCPPARGFTPQLIEFYDKFHESKNF   61 (144)
T ss_dssp             GGTSTTCCEEEETTEEEEGGG------------GTTCEEEEEEE---------CTTCHHHHHHHHHHHHHHHHHTTTTTE
T ss_pred             CCCCCCcEeEcCCCCEEeHHH------------hCCCEEEEEec---------cccccccccccchhHHhhhhccccccc
Confidence            358999999999999998653            46999888555         999999862          34455689


Q ss_pred             eEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEE-cCChHHHHHHhcccCCcccEEEEEeCC-CcEE
Q 024610          165 HLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYS-FGDHYYFRKELKILNLLTGYIFLLDKF-GRIR  239 (265)
Q Consensus       165 qiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~-~g~~~~iRe~Lgi~N~~vGYVyLVD~~-grIR  239 (265)
                      ++|.|+++++.- .   ....    +. ..++      ....+. .+....+.+.+++..  ++.+||||++ |+|.
T Consensus        62 ~~v~is~d~~~~-~---~~~~----~~-~~~~------~~~~~~~~d~~~~l~~~y~v~~--~Pt~~liD~~~G~Vi  121 (144)
T d1o8xa_          62 EVVFCTWDEEED-G---FAGY----FA-KMPW------LAVPFAQSEAVQKLSKHFNVES--IPTLIGVDADSGDVV  121 (144)
T ss_dssp             EEEEEECCCSHH-H---HHHH----HT-TCSS------EECCGGGHHHHHHHHHHTTCCS--SSEEEEEETTTCCEE
T ss_pred             ccccccccccHH-H---HHHH----Hh-hccc------cceeeecccchhhHHHHcCCCc--CCEEEEEeCCCCEEE
Confidence            999999886432 1   1111    21 1221      111111 133467899999987  9999999987 8996

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=98.59  E-value=1e-07  Score=75.27  Aligned_cols=107  Identities=15%  Similarity=0.140  Sum_probs=73.7

Q ss_pred             ccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCC
Q 024610           94 AAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKN  163 (265)
Q Consensus        94 ~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~  163 (265)
                      -+.++|++.....+|.++++.+            ++||+.||-+|         +|||.||.+          .+...++
T Consensus         4 ~~k~~P~~~~~~~~~~~v~l~~------------~~GK~vvl~Fw---------atwC~~C~~~~p~l~~l~~~~~~~~~   62 (144)
T d1o73a_           4 LAKYLPGATNLLSKSGEVSLGS------------LVGKTVFLYFS---------ASWCPPCRGFTPVLAEFYEKHHVAKN   62 (144)
T ss_dssp             GGGTSCTTCCBBCTTSCBCSGG------------GTTCEEEEEEE---------CTTCHHHHHHHHHHHHHHHHHTTTTT
T ss_pred             cccCCCCceeeccCCCEEeHHH------------hCCCEEEEEeC---------hhhCccchhhhHHHHHHHHHHhhccC
Confidence            4578999998888888887542            47999999666         999999973          2344568


Q ss_pred             eeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCC---hHHHHHHhcccCCcccEEEEEeCC-CcEE
Q 024610          164 VHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGD---HYYFRKELKILNLLTGYIFLLDKF-GRIR  239 (265)
Q Consensus       164 vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~---~~~iRe~Lgi~N~~vGYVyLVD~~-grIR  239 (265)
                      +++|.|++++..- .   ...+    +.+ .++      .+.  .+++   ...+.+.+|+.-  ++.+||||++ |+|.
T Consensus        63 ~~vi~is~d~~~~-~---~~~~----~~~-~~~------~~~--~~~~~~~~~~l~~~y~v~~--~Pt~~lID~~~G~Ii  123 (144)
T d1o73a_          63 FEVVLISWDENES-D---FHDY----YGK-MPW------LAL--PFDQRSTVSELGKTFGVES--IPTLITINADTGAII  123 (144)
T ss_dssp             EEEEEEECCSSHH-H---HHHH----HTT-CSS------EEC--CTTCHHHHHHHHHHHTCCS--SSEEEEEETTTCCEE
T ss_pred             eEEEEEecchhHH-H---HHHH----HHh-ccc------cce--eeeccchHHHHHHHcCCCc--CCEEEEEECCCCEEE
Confidence            9999999987532 1   1222    222 121      111  1233   245888999975  9999999997 8986


Q ss_pred             E
Q 024610          240 W  240 (265)
Q Consensus       240 W  240 (265)
                      =
T Consensus       124 ~  124 (144)
T d1o73a_         124 G  124 (144)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.50  E-value=2.4e-07  Score=74.84  Aligned_cols=120  Identities=13%  Similarity=0.126  Sum_probs=73.3

Q ss_pred             cccCCCce----eeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhcc
Q 024610           95 AVKFPDLD----VSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSD  160 (265)
Q Consensus        95 AlyFPnl~----~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~  160 (265)
                      ...-|+|+    +.+.+|+++++.+            ++||+.||.++ .       .+||.+|..          .|.+
T Consensus         6 G~~APdF~~~~~l~d~~g~~vsLsd------------~~GK~vVl~F~-p-------~~~c~~C~~e~~~l~~~~~~~~~   65 (167)
T d1e2ya_           6 NHPAPEFDDMALMPNGTFKKVSLSS------------YKGKYVVLFFY-P-------MDFTFVCPTEIIQFSDDAKRFAE   65 (167)
T ss_dssp             TSBCCCCEEEEECSSSCEEEEEGGG------------GTTSEEEEEEC-S-------CSSCSSCCHHHHHHHHTHHHHHT
T ss_pred             CCCCCCCcccccccCCCCcEEeHHH------------HCCCeEEEEEc-c-------cccccccchhhHHHHHHHHHhhc
Confidence            34568887    4466899998653            47997666332 2       789888763          2222


Q ss_pred             CCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCccc----EEEEEeCCC
Q 024610          161 SKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTG----YIFLLDKFG  236 (265)
Q Consensus       161 ~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vG----YVyLVD~~g  236 (265)
                       .+++++.||.++..-.     ..+ ....+.......   ....+ ..+....+-+.+|+.+...|    .+||||++|
T Consensus        66 -~~~~v~~is~d~~~~~-----~~~-~~~~~~~~~~~~---~~~~~-l~d~~~~~~~~y~v~~~~~g~~~r~tfvID~~G  134 (167)
T d1e2ya_          66 -INTEVISCSCDSEYSH-----LQW-TSVDRKKGGLGP---MAIPM-LADKTKAIARAYGVLDEDSGVAYRGVFIIDPNG  134 (167)
T ss_dssp             -TTEEEEEEESSCHHHH-----HHH-HHSCGGGTCCCC---CSSCE-EECTTCHHHHHHTCEETTTTEECEEEEEECTTS
T ss_pred             -CceEEEeecCCcHHhH-----HHH-HhhHHHhccccc---ccccc-cccchhHHHHHcCCCcccCCCceeEEEEECCCC
Confidence             4799999999763221     111 111122211110   11222 24556778899999776544    589999999


Q ss_pred             cEEEcccCC
Q 024610          237 RIRWQGFGM  245 (265)
Q Consensus       237 rIRWagsG~  245 (265)
                      +|||+.-+.
T Consensus       135 ~Ir~~~~~~  143 (167)
T d1e2ya_         135 KLRQIIIND  143 (167)
T ss_dssp             BEEEEEEEC
T ss_pred             EEEEEEEcC
Confidence            999997553

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.50  E-value=3.2e-07  Score=74.25  Aligned_cols=146  Identities=12%  Similarity=0.098  Sum_probs=84.8

Q ss_pred             cccCCCceeeCCCCCeeeccCCCCCC---ccCccccCCCceEEEEEeeeccchHHHhhhcchhHH---hhcc------CC
Q 024610           95 AVKFPDLDVSYSDRTTLKLPVCSSGD---VANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE---AFSD------SK  162 (265)
Q Consensus        95 AlyFPnl~~~~l~G~tl~~p~~~~~~---~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e---~~~~------~~  162 (265)
                      +..+|+|++.+.+|......+....+   ..-+...++||..||.++ .       .+||.+|..   .+.+      ..
T Consensus         6 Gd~aPdF~l~~~~g~~~~~~~~~~~~~~~~~~~l~d~~GK~vvl~f~-p-------~~~~p~C~~~~~~~~~~~~~~~~~   77 (169)
T d2bmxa1           6 GDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFW-P-------KDFTFVCPTEIAAFSKLNDEFEDR   77 (169)
T ss_dssp             TCBCCCCEEEEECSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEEC-S-------CTTSCCCHHHHHHHHHTHHHHHTT
T ss_pred             CCCCCCCEEeeccCCcccccccccccccccEeeHHHHCCCeEEEEEe-c-------CCCCcccccccccccccccccccc
Confidence            45689999999999776655332111   011123478998877443 2       677776652   1211      24


Q ss_pred             CeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccC---CcccEEEEEeCCCcEE
Q 024610          163 NVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILN---LLTGYIFLLDKFGRIR  239 (265)
Q Consensus       163 ~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N---~~vGYVyLVD~~grIR  239 (265)
                      ++++|-|+.++.--     ...+     .+......  -....++ .+....+-+++|+.|   .....+||||++|+||
T Consensus        78 g~~vv~is~d~~~~-----~~~~-----~~~~~~~~--~~~f~ll-~D~~~~v~~~ygv~~~~~~~~r~~fvID~~G~I~  144 (169)
T d2bmxa1          78 DAQILGVSIDSEFA-----HFQW-----RAQHNDLK--TLPFPML-SDIKRELSQAAGVLNADGVADRVTFIVDPNNEIQ  144 (169)
T ss_dssp             TEEEEEEESSCHHH-----HHHH-----HHHCTTGG--GCCSCEE-ECTTSHHHHHHTCBCTTSSBCEEEEEECTTSBEE
T ss_pred             Ccceeeccccchhh-----hhhh-----cccccccc--cceEEEE-eccHHHHHHHcCCCccCCccceeEEEEcCCCEEE
Confidence            79999999987432     1111     11111100  0112232 466678899999865   3456799999999999


Q ss_pred             EcccCCC-CHHHHHHHHHHHHhh
Q 024610          240 WQGFGMA-TPEELSSLLSCTSLL  261 (265)
Q Consensus       240 WagsG~a-t~~E~e~L~k~~~~L  261 (265)
                      |+.-+.. .+..++.+.+.++.|
T Consensus       145 ~~~~~~~~~~~~~~evl~~l~al  167 (169)
T d2bmxa1         145 FVSATAGSVGRNVDEVLRVLDAL  167 (169)
T ss_dssp             EEEEECTTCCCCHHHHHHHHHHH
T ss_pred             EEEEcCCCCCCCHHHHHHHHHHh
Confidence            9987543 333444444544444

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.49  E-value=2.7e-07  Score=74.73  Aligned_cols=130  Identities=10%  Similarity=0.028  Sum_probs=77.4

Q ss_pred             cccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhH-------HhhccCCCee
Q 024610           93 LAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFF-------EAFSDSKNVH  165 (265)
Q Consensus        93 ~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~-------e~~~~~~~vq  165 (265)
                      ......|+|++.+.+|+++++.+            ++||+.|+.++-        ..||-+|.       +.+. ..+++
T Consensus        18 ~iG~~aP~F~L~~~~g~~v~L~d------------~~Gk~vvl~f~~--------~~~~p~C~~e~~~l~~~~~-~~g~~   76 (166)
T d1xvqa_          18 AVGSPAPAFTLTGGDLGVISSDQ------------FRGKSVLLNIFP--------SVDTPVCATSVRTFDERAA-ASGAT   76 (166)
T ss_dssp             CTTSBCCCCEEECTTSCEEEGGG------------GTTSCEEEEECS--------CCCSSCCCHHHHHHHHHHH-HTTCE
T ss_pred             CCcCCCCCeEEECCCCCEEehHH------------hCCcEEEEEeee--------cccccccHHHHHHHhhhcc-ccccc
Confidence            45678999999999999998653            479987775541        23443354       2333 34799


Q ss_pred             EEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcc-------cEEEEEeCCCcE
Q 024610          166 LYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLT-------GYIFLLDKFGRI  238 (265)
Q Consensus       166 iv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~v-------GYVyLVD~~grI  238 (265)
                      ++-|++++..-...     +     .+...      ..+.+..-+.+..+-+.+|+.....       ..+||||++|+|
T Consensus        77 vv~Is~d~~~~~~~-----~-----~~~~~------~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~ra~fvID~~G~I  140 (166)
T d1xvqa_          77 VLCVSKDLPFAQKR-----F-----CGAEG------TENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNV  140 (166)
T ss_dssp             EEEEESSCHHHHTT-----C-----C------------CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBE
T ss_pred             ccccccchHHHHHH-----H-----HHHhC------CcccccccchhHHHHHHhCeeeccCcccCceeeEEEEEeCCCEE
Confidence            99999877542111     1     11111      1122222355677888888765432       368999999999


Q ss_pred             EEccc--CCCCHHHHHHHHHHHH
Q 024610          239 RWQGF--GMATPEELSSLLSCTS  259 (265)
Q Consensus       239 RWags--G~at~~E~e~L~k~~~  259 (265)
                      +++.-  ......+.+...+.++
T Consensus       141 ~y~~~~~~~~~~~~~d~il~aL~  163 (166)
T d1xvqa_         141 AYTELVPEIAQEPNYEAALAALG  163 (166)
T ss_dssp             EEEEECSBTTCCCCHHHHHHHHH
T ss_pred             EEEEEcCCCCCCCCHHHHHHHHH
Confidence            96544  3344334554444443

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.47  E-value=8.2e-07  Score=71.85  Aligned_cols=135  Identities=13%  Similarity=0.118  Sum_probs=73.6

Q ss_pred             cCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhH-------Hhhc-cCCCeeEEE
Q 024610           97 KFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFF-------EAFS-DSKNVHLYE  168 (265)
Q Consensus        97 yFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~-------e~~~-~~~~vqiv~  168 (265)
                      .-|+|++++.+|+++++.+            ++||++||.++++.     +.++|..+.       +.+. ...+++++-
T Consensus        10 ~~p~F~l~d~~G~~vsl~d------------~~Gk~vvl~F~~t~-----Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~   72 (172)
T d1xzoa1          10 EVEPFTFQNQDGKNVSLES------------LKGEVWLADFIFTN-----CETICPPMTAHMTDLQKKLKAENIDVRIIS   72 (172)
T ss_dssp             ECCCCEEECTTSCEEETGG------------GTTCCEEEEEECSC-----CSSCCCSHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             cCCCeEEEcCCCCEEcHHH------------hCCCEEEEEEeccc-----ccccccccchhhhhhhhhhccccccccccc
Confidence            4699999999999998642            47999999776331     123333322       3342 346799999


Q ss_pred             Eecccch-hhccccchHHHHHHHHhcCCCCCccccceeEEEcCCh-HHH----HHHhcccC---------CcccEEEEEe
Q 024610          169 VSFIDSW-LLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDH-YYF----RKELKILN---------LLTGYIFLLD  233 (265)
Q Consensus       169 In~~e~~-lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~-~~i----Re~Lgi~N---------~~vGYVyLVD  233 (265)
                      |+++... ....  ++.+     .+..+.. +--| +.+  .++. ..+    .+..+.-.         .+++++||||
T Consensus        73 isiDp~~Dtp~~--l~~y-----~~~~~~~-~~~w-~~l--t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD  141 (172)
T d1xzoa1          73 FSVDPENDKPKQ--LKKF-----AANYPLS-FDNW-DFL--TGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVG  141 (172)
T ss_dssp             EESCTTTCCHHH--HHHH-----HTTSCCC-GGGE-EEE--BCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEEC
T ss_pred             cccccccchHHH--HHHH-----HHHhccc-cccc-eee--ccchHHHHHHHHHhheeeEEeccCCCceEeeeeEEEEEc
Confidence            9986321 1011  2222     3333221 0001 111  2332 222    22333321         1346899999


Q ss_pred             CCCcEEEcccC--CCCHHHHHHHHHHHH
Q 024610          234 KFGRIRWQGFG--MATPEELSSLLSCTS  259 (265)
Q Consensus       234 ~~grIRWagsG--~at~~E~e~L~k~~~  259 (265)
                      ++|+||+.-.|  ..+.+|+....|.++
T Consensus       142 ~~G~i~~~~~g~~~~~~~~l~~dik~~~  169 (172)
T d1xzoa1         142 PDGKVLKDYNGVENTPYDDIISDVKSAS  169 (172)
T ss_dssp             TTSEEEEEEESSSSCCHHHHHHHHHHHT
T ss_pred             CCCeEEEEEcCCCCCCHHHHHHHHHHHH
Confidence            99999955444  455566555555544

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=98.40  E-value=1.1e-06  Score=71.43  Aligned_cols=131  Identities=15%  Similarity=0.101  Sum_probs=78.8

Q ss_pred             cccCCCceeeCCCC----CeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhcc
Q 024610           95 AVKFPDLDVSYSDR----TTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSD  160 (265)
Q Consensus        95 AlyFPnl~~~~l~G----~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~  160 (265)
                      ....|+|.+++..|    +++++.            .++||..||.++ .       ..||.+|..          .|.+
T Consensus         4 G~~aP~F~l~~~~~g~~~~~vsls------------d~~GK~vvl~F~-p-------~~~~p~C~~e~~~~~~~~~~f~~   63 (166)
T d1we0a1           4 GTEVQPFRAQAFQSGKDFFEVTEA------------DLKGKWSIVVFY-P-------ADFSFVCPTELEDVQKEYAELKK   63 (166)
T ss_dssp             TCBCCCCEEEEECSSSCCEEEETT------------TTSSSEEEEEEC-S-------CTTCSSCTHHHHHHHHHHHHHHH
T ss_pred             CCcCCCCEEeeecCCcceeEeeHH------------HhCCCeEEEEEe-c-------ccCCcHHHHHHHHHHHHHHhhcc
Confidence            34689999886433    456543            247998766443 2       558887762          2333


Q ss_pred             CCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccE----EEEEeCCC
Q 024610          161 SKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGY----IFLLDKFG  236 (265)
Q Consensus       161 ~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGY----VyLVD~~g  236 (265)
                       .++++|.||.++-..     .+.+ ........+      ....+ ..+....+-+++|+.+...|+    +||||++|
T Consensus        64 -~g~~vv~IS~D~~~~-----~~~~-~~~~~~~~~------~~fpl-l~D~~~~v~~~ygv~~~~~~~~~r~tfvID~~G  129 (166)
T d1we0a1          64 -LGVEVYSVSTDTHFV-----HKAW-HENSPAVGS------IEYIM-IGDPSQTISRQFDVLNEETGLADRGTFIIDPDG  129 (166)
T ss_dssp             -TTEEEEEEESSCHHH-----HHHH-HHSCHHHHT------CCSEE-EECTTCHHHHHTTCEETTTTEECEEEEEECTTS
T ss_pred             -cceEEEecccccHHH-----HHHH-hhhhhhhcc------ccccc-ccCcccHHHHHhCCCccccCcccceEEEECCCC
Confidence             379999999976321     1111 111111001      11233 246667899999998776665    89999999


Q ss_pred             cEEEcccCCC----CHHHHHHHHHHHH
Q 024610          237 RIRWQGFGMA----TPEELSSLLSCTS  259 (265)
Q Consensus       237 rIRWagsG~a----t~~E~e~L~k~~~  259 (265)
                      +|||+.-+..    ..+|+-.+.++++
T Consensus       130 ~I~~~~i~~~~~~r~~~eil~~lkal~  156 (166)
T d1we0a1         130 VIQAIEINADGIGRDASTLINKVKAAQ  156 (166)
T ss_dssp             BEEEEEEECTTSCCCTTHHHHHHHHHH
T ss_pred             cEEEEEEcCCCCCCCHHHHHHHHHhcc
Confidence            9999977653    2345444444443

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=98.38  E-value=6.1e-07  Score=72.54  Aligned_cols=118  Identities=12%  Similarity=0.013  Sum_probs=74.0

Q ss_pred             cccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhH-------HhhccCCCee
Q 024610           93 LAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFF-------EAFSDSKNVH  165 (265)
Q Consensus        93 ~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~-------e~~~~~~~vq  165 (265)
                      ..+...|+|++.+.+|+++++.+            ++||+.||.+| .       ..||.+|.       +...+..+++
T Consensus        19 ~vG~~APdF~L~~~~g~~vsLsd------------~~GK~vvl~f~-~-------~~~~p~C~~~~~~l~~~~~~~~~~~   78 (164)
T d1qxha_          19 QAGSKAQTFTLVAKDLSDVTLGQ------------FAGKRKVLNIF-P-------SIDTGVCAASVRKFNQLATEIDNTV   78 (164)
T ss_dssp             CTTSBCCCCEEECTTSCEEEGGG------------GTTSEEEEEEC-S-------CSCSSCCCHHHHHHHHHHHTSTTEE
T ss_pred             CCCCCCCCeEEECCCCCEEeHHH------------hCCCeEEEEEe-c-------chhcccchHHHHHHHHHHHhhccce
Confidence            35667899999999999998753            36998766443 2       45666553       3334557899


Q ss_pred             EEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCc---c----cEEEEEeCCCcE
Q 024610          166 LYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLL---T----GYIFLLDKFGRI  238 (265)
Q Consensus       166 iv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~---v----GYVyLVD~~grI  238 (265)
                      +|-|+++...-.     +.+        .....  +....+...+...++-+++|+....   .    ..+||||++|+|
T Consensus        79 vv~Is~d~~~~~-----~~~--------~~~~~--~~~~~~~~~d~~~~~~~~ygv~~~~~~~~g~~~ra~fvID~~G~I  143 (164)
T d1qxha_          79 VLCISADLPFAQ-----SRF--------CGAEG--LNNVITLSTFRNAEFLQAYGVAIADGPLKGLAARAVVVIDENDNV  143 (164)
T ss_dssp             EEEEESSCHHHH-----TTC--------CSSTT--CTTEEEEECTTCHHHHHHTTCBBCSSTTTTSBCCEEEEECTTSBE
T ss_pred             eeeEEcCCHHHH-----HHH--------HHHhC--CCcceeeccccchhhHHhcCeEeecCcccCcccCEEEEEcCCCEE
Confidence            999998753211     111        11110  1112222223357788899875322   2    348999999999


Q ss_pred             EEcccCC
Q 024610          239 RWQGFGM  245 (265)
Q Consensus       239 RWagsG~  245 (265)
                      ||+.-+.
T Consensus       144 ~y~~~~~  150 (164)
T d1qxha_         144 IFSQLVD  150 (164)
T ss_dssp             EEEEECS
T ss_pred             EEEEEcC
Confidence            9876554

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.30  E-value=2.8e-06  Score=67.04  Aligned_cols=105  Identities=19%  Similarity=0.263  Sum_probs=66.8

Q ss_pred             cccCC-CceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCC
Q 024610           95 AVKFP-DLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKN  163 (265)
Q Consensus        95 AlyFP-nl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~  163 (265)
                      ...|| .+...+-+|..+++.            .++||+.+|-+|         +|||.||.+          .+.+..+
T Consensus         4 ~k~~p~~~~~l~~~~~~v~ls------------~l~GK~vll~Fw---------AtWC~pC~~~~p~L~~l~~~~~~~~~   62 (144)
T d1i5ga_           4 KKFFPYSTNVLKGAAADIALP------------SLAGKTVFFYFS---------ASWCPPSRAFTPQLIDFYKAHAEKKN   62 (144)
T ss_dssp             TTSCSSCSEEEETTEEEEEGG------------GGTTSEEEEEEE---------CTTCHHHHHHHHHHHHHHHHHTTTTT
T ss_pred             cccCCCchhhccCCCCEeeHH------------HcCCCEEEEEEE---------ecCCchHhhhhHhHHHHHHHHHhccC
Confidence            45677 233344455566543            347999988666         999999973          3455578


Q ss_pred             eeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCCh---HHHHHHhcccCCcccEEEEEeCC-CcEE
Q 024610          164 VHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDH---YYFRKELKILNLLTGYIFLLDKF-GRIR  239 (265)
Q Consensus       164 vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~---~~iRe~Lgi~N~~vGYVyLVD~~-grIR  239 (265)
                      +++|.|+.+++.- .   +..+    +.+ .++      ...  .+.+.   ..+.+.+|+..  ++.+||||++ |+|-
T Consensus        63 ~~vi~vs~D~~~~-~---~~~~----~~~-~~~------~~~--~~~d~~~~~~l~~~y~v~~--iPt~~lid~~~G~vi  123 (144)
T d1i5ga_          63 FEVMLISWDESAE-D---FKDY----YAK-MPW------LAL--PFEDRKGMEFLTTGFDVKS--IPTLVGVEADSGNII  123 (144)
T ss_dssp             EEEEEEECCSSHH-H---HHHH----HTT-CSS------EEC--CTTCHHHHHHHHHHTTCCS--SSEEEEEETTTCCEE
T ss_pred             cEEEEEeccccHH-H---HHHH----HHh-CCC------Cce--eeEChHHHHHHHHHCCCCC--cCEEEEEeCCCCEEE
Confidence            9999999987532 1   1222    222 222      111  12332   45788999985  9999999986 8884

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=6.7e-06  Score=63.81  Aligned_cols=128  Identities=7%  Similarity=-0.070  Sum_probs=72.5

Q ss_pred             CceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcc-hhH----------HhhccC---CCee
Q 024610          100 DLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSS-PFF----------EAFSDS---KNVH  165 (265)
Q Consensus       100 nl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~-p~~----------e~~~~~---~~vq  165 (265)
                      +|+++|.+|+++++.+            ++||+.||.++         .|||. +|.          +.+...   ..++
T Consensus         2 dF~L~d~~G~~vsl~d------------~~GK~vll~F~---------~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~   60 (160)
T d1wp0a1           2 PFSLTTHTGERKTDKD------------YLGQWLLIYFG---------FTHCPDVCPEELEKMIQVVDEIDSITTLPDLT   60 (160)
T ss_dssp             CCEEEETTSCEEEGGG------------GTTSEEEEEEE---------CTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEE
T ss_pred             CeEEEcCCCCEEcHHH------------hCCCEEEEEEE---------CCCCccccccchHHHHHHHHHhhccccccccc
Confidence            4678899999998653            47999999776         56664 232          223233   3456


Q ss_pred             EEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCCh---HHHHHHhcccCC-------------cccEE
Q 024610          166 LYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDH---YYFRKELKILNL-------------LTGYI  229 (265)
Q Consensus       166 iv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~---~~iRe~Lgi~N~-------------~vGYV  229 (265)
                      +.-++.....-.     .. ............    +..   ..++.   ..+..++++...             ++..+
T Consensus        61 ~~~~~~~~~~~~-----~~-~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~  127 (160)
T d1wp0a1          61 PLFISIDPERDT-----KE-AIANYVKEFSPK----LVG---LTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIM  127 (160)
T ss_dssp             EEEEESCTTTCC-----HH-HHHHHHHTTCTT----CEE---EECCHHHHHHHHHHTTCCEEECCCCGGGCCCEEECCEE
T ss_pred             ccccccCCCccc-----HH-HHHHHHhhcCCC----ccc---ccCchHHhhHHhhhhheeeecccCCCCCCceEeccceE
Confidence            666666543221     11 111122222221    111   12332   334455553321             34678


Q ss_pred             EEEeCCCcEEEcccCCCCHHHHHHHHHHHHhhhcC
Q 024610          230 FLLDKFGRIRWQGFGMATPEELSSLLSCTSLLLEG  264 (265)
Q Consensus       230 yLVD~~grIRWagsG~at~~E~e~L~k~~~~Ll~e  264 (265)
                      ||||++|+||..-.+..+++|   +.+.++.||+|
T Consensus       128 ~LId~~G~i~~~~~~~~~~~~---i~~~I~~~lk~  159 (160)
T d1wp0a1         128 YLIGPDGEFLDYFGQNKRKGE---IAASIATHMRP  159 (160)
T ss_dssp             EEECTTSCEEEEEETTCCHHH---HHHHHHHHHTT
T ss_pred             EEECCCCcEEEEECCCCCHHH---HHHHHHHHHhc
Confidence            999999999987666677765   46666777765

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=98.19  E-value=3.1e-06  Score=68.27  Aligned_cols=125  Identities=9%  Similarity=-0.010  Sum_probs=71.9

Q ss_pred             cccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHhhccCCCeeEEEEecc
Q 024610           93 LAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEAFSDSKNVHLYEVSFI  172 (265)
Q Consensus        93 ~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~~~~~~~vqiv~In~~  172 (265)
                      ..+...|+|.+.+.+|+++++.+            ++||..|+.++-..+.--|.. -...+.+.+.+..++++|-|+.+
T Consensus        17 ~vG~~APdF~L~d~~g~~v~Lsd------------~~Gk~vVL~f~p~~~tp~C~~-e~~~~~~~~~~~~~~~vi~iS~d   83 (164)
T d1q98a_          17 QVGEIVENFILVGNDLADVALND------------FASKRKVLNIFPSIDTGVCAT-SVRKFNQQAAKLSNTIVLCISAD   83 (164)
T ss_dssp             CTTCBCCCCEEECTTSCEEEGGG------------GTTSEEEEEECSCSCSSCCCH-HHHHHHHHHHHSTTEEEEEEESS
T ss_pred             CCCCCCCCcEEECCCCCEEeehh------------hCCcEEEEEecCccccCcccH-HHHHHHHHHHHhccceEEeecCC
Confidence            36678999999999999998753            368987665541111111111 11122344555568999999987


Q ss_pred             cchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCc-------ccEEEEEeCCCcEEEcccCC
Q 024610          173 DSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLL-------TGYIFLLDKFGRIRWQGFGM  245 (265)
Q Consensus       173 e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~-------vGYVyLVD~~grIRWagsG~  245 (265)
                      .-.-..     .+     .+...     +....+..-.....+.+.+|+.+..       ...+||||++|+|||+.-+.
T Consensus        84 ~~~~~~-----~~-----~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~Ra~fvID~~G~I~y~~~~~  148 (164)
T d1q98a_          84 LPFAQA-----RF-----CGAEG-----IENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQLVE  148 (164)
T ss_dssp             CHHHHT-----TC-----TTTTT-----CTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEECS
T ss_pred             cHHHHH-----HH-----HHHhC-----CccccccccccchhHHHhhceecccCccccCcccEEEEECCCCEEEEEEECC
Confidence            532211     11     11111     1111222212245677888876433       24589999999999986554

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.18  E-value=2.4e-06  Score=68.63  Aligned_cols=116  Identities=15%  Similarity=0.116  Sum_probs=69.2

Q ss_pred             CCceeeC---CCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhH----------HhhccCCCee
Q 024610           99 PDLDVSY---SDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFF----------EAFSDSKNVH  165 (265)
Q Consensus        99 Pnl~~~~---l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~----------e~~~~~~~vq  165 (265)
                      |+|++.+   -+|+++++.+            ++||..|+.+  +.      ..||.+|.          +.|.+ .+++
T Consensus         4 P~F~l~~~~~~~~~~vsL~d------------~~Gk~vVL~F--yp------~~~tp~C~~e~~~~~~~~~~~~~-~~~~   62 (158)
T d1zyea1           4 PYFKGTAVVSGEFKEISLDD------------FKGKYLVLFF--YP------LDFTFVCPTEIIAFSDKASEFHD-VNCE   62 (158)
T ss_dssp             CCCEEEEECSSSEEEEEGGG------------GTTSEEEEEE--CS------CTTCSSSHHHHHHHHHHHHHHHH-TTEE
T ss_pred             CCCccceeeCCCccEEeHHH------------hCCCeEEEEE--ee------hhcCCccccchhhHHHhHHHhhc-CCce
Confidence            8888654   3567777653            3699755533  32      56776655          22333 3799


Q ss_pred             EEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccE----EEEEeCCCcEEEc
Q 024610          166 LYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGY----IFLLDKFGRIRWQ  241 (265)
Q Consensus       166 iv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGY----VyLVD~~grIRWa  241 (265)
                      ++-||.+.-..     .+.+ ....+.......   ....+ ..+....+-+.+|+.+..-|.    +||||++|+|||.
T Consensus        63 vigIS~d~~~~-----~~~~-~~~~~~~~~~~~---~~f~l-lsD~~~~~~~~ygv~~~~~g~~~R~tfvID~~G~I~~~  132 (158)
T d1zyea1          63 VVAVSVDSHFS-----HLAW-INTPRKNGGLGH---MNIAL-LSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHL  132 (158)
T ss_dssp             EEEEESSCHHH-----HHHH-HTSCGGGTCCCS---CSSEE-EECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred             EEeccCcCHHH-----HHHH-HhhhHhhccccc---ccccc-ccccccHHHHHHHhccccCCccccEEEEECCCCEEEEE
Confidence            99999987432     1111 111111111100   11223 235567799999998766665    9999999999997


Q ss_pred             ccCC
Q 024610          242 GFGM  245 (265)
Q Consensus       242 gsG~  245 (265)
                      --+.
T Consensus       133 ~i~~  136 (158)
T d1zyea1         133 SVND  136 (158)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            6543

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.13  E-value=1.1e-05  Score=62.27  Aligned_cols=39  Identities=8%  Similarity=0.052  Sum_probs=31.0

Q ss_pred             cccEEEEEeCCCcEEEcccCCCCHHH-HHHHHHHHHhhhc
Q 024610          225 LTGYIFLLDKFGRIRWQGFGMATPEE-LSSLLSCTSLLLE  263 (265)
Q Consensus       225 ~vGYVyLVD~~grIRWagsG~at~~E-~e~L~k~~~~Ll~  263 (265)
                      +++-+||||++|+||..-.+..++++ .+.+.+.++.||.
T Consensus       129 h~~~~fLID~~G~vv~~~~~~~~~~~~~~~I~e~ik~ll~  168 (169)
T d2b7ka1         129 HSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKSYVP  168 (169)
T ss_dssp             TCCCEEEECTTSCEEEEECTTCCTTHHHHHHHHHHHHCCC
T ss_pred             ccceEEEECCCCeEEEEECCCCCHHHHHHHHHHHHHHHhC
Confidence            35679999999999988777767766 4568888888875

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.12  E-value=5.4e-06  Score=69.13  Aligned_cols=132  Identities=15%  Similarity=0.118  Sum_probs=79.1

Q ss_pred             ccCCCcee----eCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccC
Q 024610           96 VKFPDLDV----SYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDS  161 (265)
Q Consensus        96 lyFPnl~~----~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~  161 (265)
                      .-=|+|++    .+.+|+++++.+            ++||..|+.  |+.      ..||..|..          .|. .
T Consensus         7 ~PAPdFtl~a~l~d~~g~~vsLsd------------~~GK~vVL~--FyP------~~~t~~C~~E~~~f~~~~~~f~-~   65 (194)
T d1uula_           7 HPAPDFNETALMPNGTFKKVALTS------------YKGKWLVLF--FYP------MDFTFVCPTEICQFSDRVKEFS-D   65 (194)
T ss_dssp             SBCCCCEEEEECTTSCEEEEEGGG------------GTTSEEEEE--ECS------CTTCSHHHHHHHHHHHTHHHHH-T
T ss_pred             CCCCCCcccccccCCCCcEEehHH------------hCCCeEEEE--EEe------CCccccchhhhhHHHhhhhhhc-c
Confidence            34588883    456788887643            369976653  332      678877652          233 2


Q ss_pred             CCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccE----EEEEeCCCc
Q 024610          162 KNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGY----IFLLDKFGR  237 (265)
Q Consensus       162 ~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGY----VyLVD~~gr  237 (265)
                      .+++++-||.+.....     +.+ ...++.......   ....+ ..+....+-+++|+.+...|.    +||||++|+
T Consensus        66 ~g~~VlgIS~Ds~~s~-----~~~-~~~~~~~~~~~~---l~fpl-lsD~~~~v~~~ygv~~~~~~~~~R~tfvID~~G~  135 (194)
T d1uula_          66 IGCEVLACSMDSEYSH-----LAW-TSIERKRGGLGQ---MNIPI-LADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQN  135 (194)
T ss_dssp             TTEEEEEEESSCHHHH-----HHH-HHSCGGGTCCCS---CSSCE-EECTTCHHHHHHTCEETTTTEECEEEEEECTTSB
T ss_pred             CceEEEEEecCchhhh-----hhh-hhhhhhhccccC---CCcce-eeCCcchHHHHcCCeeccCCceEEEEEEECCCCe
Confidence            4899999998864321     111 111222111110   11222 246678899999997766555    999999999


Q ss_pred             EEEcccCC----CCHHHHHHHHHHH
Q 024610          238 IRWQGFGM----ATPEELSSLLSCT  258 (265)
Q Consensus       238 IRWagsG~----at~~E~e~L~k~~  258 (265)
                      |||...+.    ...+|+-...+++
T Consensus       136 I~~~~~~~~~~~r~~~E~Lr~l~al  160 (194)
T d1uula_         136 LRQITVNDLPVGRDVDEALRLVKAF  160 (194)
T ss_dssp             EEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             EEEEEEecCCCCcCHHHHHHHHHHh
Confidence            99997543    2445554444443

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.05  E-value=1.2e-05  Score=64.07  Aligned_cols=130  Identities=9%  Similarity=0.057  Sum_probs=77.9

Q ss_pred             cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCCe
Q 024610           95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKNV  164 (265)
Q Consensus        95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~v  164 (265)
                      +...|+|++.+.+|+++++.+..     +     +|++.|+  ||+.      .+||.+|..          .|.  .++
T Consensus         8 G~~aP~f~L~~~~g~~~~l~~~~-----~-----k~~~vvl--ff~p------~~~cp~C~~~~~~~~~~~~~~~--~~~   67 (156)
T d2a4va1           8 GDPIPDLSLLNEDNDSISLKKIT-----E-----NNRVVVF--FVYP------RASTPGSTRQASGFRDNYQELK--EYA   67 (156)
T ss_dssp             TCBCCSCEEECTTSCEEEHHHHH-----H-----HCSEEEE--EECS------SSSSHHHHHHHHHHHHHHHHHT--TTC
T ss_pred             CCCCCCeEEECCCCCEEeeHHHc-----C-----CccEEEE--Eecc------cccCcchhhhhHHHHHHHHHHh--hcc
Confidence            45679999999999999876421     0     2333333  4432      578887762          333  357


Q ss_pred             eEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccE---EEEEeCCCcEEEc
Q 024610          165 HLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGY---IFLLDKFGRIRWQ  241 (265)
Q Consensus       165 qiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGY---VyLVD~~grIRWa  241 (265)
                      .++.||.+.-.-     ++.+ ..  +.++|        ..+ ..+....+-+++|+.+...+.   .++||.+|+|+|+
T Consensus        68 ~~~~is~d~~~~-----~~~f-~~--~~~l~--------f~~-L~D~~~~v~~~ygv~~~~~~~~~r~~~i~~dg~i~~~  130 (156)
T d2a4va1          68 AVFGLSADSVTS-----QKKF-QS--KQNLP--------YHL-LSDPKREFIGLLGAKKTPLSGSIRSHFIFVDGKLKFK  130 (156)
T ss_dssp             EEEEEESCCHHH-----HHHH-HH--HHTCS--------SEE-EECTTCHHHHHHTCBSSSSSCBCCEEEEEETTEEEEE
T ss_pred             ceeeeccchhhh-----HHhh-hc--ccCcc--------cee-ccchHHHHHHHcCCCccccCCeeEEEEEEECCeEEEE
Confidence            789999764211     2222 11  11222        223 246678899999997644321   3455568999999


Q ss_pred             ccCCCCHHH----HHHHHHHHHhh
Q 024610          242 GFGMATPEE----LSSLLSCTSLL  261 (265)
Q Consensus       242 gsG~at~~E----~e~L~k~~~~L  261 (265)
                      .-|..+..+    .+-+.+.++.|
T Consensus       131 ~~~~~~~~~~~~~~~evl~~lk~l  154 (156)
T d2a4va1         131 RVKISPEVSVNDAKKEVLEVAEKF  154 (156)
T ss_dssp             EESCCHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEeCCCCCcchHHHHHHHHHHHh
Confidence            888765544    34455555555

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=97.96  E-value=1.2e-05  Score=65.22  Aligned_cols=134  Identities=13%  Similarity=0.084  Sum_probs=75.7

Q ss_pred             cCCCceeeCCCCC-----eeeccCCCCCCccCccccCCCc-eEEEEEeeeccchHHHhhhcchhH----------Hhhcc
Q 024610           97 KFPDLDVSYSDRT-----TLKLPVCSSGDVANADKAAIPK-VSLVCLTFRASSQAMVDSWSSPFF----------EAFSD  160 (265)
Q Consensus        97 yFPnl~~~~l~G~-----tl~~p~~~~~~~~~t~~~l~gK-vSIV~l~~~~~gq~~~~sw~~p~~----------e~~~~  160 (265)
                      .-|+|++.+.+|.     ++++.+            ..|| +.|+.+ +-       ..||..|.          +.|.+
T Consensus         6 ~APdF~l~~~~g~~~~~~~~~Lsd------------~~gk~~vvl~F-yP-------~~~tp~C~~e~~~~~~~~~~f~~   65 (170)
T d1zofa1           6 LAPDFKAPAVLGNNEVDEHFELSK------------NLGKNGVILFF-WP-------KDFTFVCPTEIIAFDKRVKDFHE   65 (170)
T ss_dssp             BCCCCEEEEECTTSCEEEEEETTT------------SCCSSEEEEEE-CS-------CTTCSSCCTHHHHHHHTHHHHHH
T ss_pred             cCCCcCcccccCCCccceEEEeHH------------HcCCCEEEEEE-Ec-------cccCCcCHHHHHHHHHhHHhhcc
Confidence            4599999988884     455442            2465 555533 22       67777664          22332


Q ss_pred             CCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCc---ccEEEEEeCCCc
Q 024610          161 SKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLL---TGYIFLLDKFGR  237 (265)
Q Consensus       161 ~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~---vGYVyLVD~~gr  237 (265)
                       .++++|.|+.+.-...     +.+ ....+..-....   ....+ ..+....+-+++|+.+..   ..-+||||++|+
T Consensus        66 -~g~~Vvgis~d~~~~~-----~~~-~~~~~~~~~~~~---~~~~~-l~D~~~~v~~~ygv~~~~~~~~r~tfvID~~G~  134 (170)
T d1zofa1          66 -KGFNVIGVSIDSEQVH-----FAW-KNTPVEKGGIGQ---VSFPM-VADITKSISRDYDVLFEEAIALRGAFLIDKNMK  134 (170)
T ss_dssp             -TTEEEEEEESSCHHHH-----HHH-HTSCGGGTCCCC---CSSCE-EECTTSHHHHHTTCEETTTEECEEEEEEETTTE
T ss_pred             -CCeeEecccccchhhH-----HHH-HhhhhhcccccC---ccccc-ccccccHHHHHcCCCccccceeEEEEEEcCCCe
Confidence             4799999999763221     111 101111111000   11222 235567888999986543   234899999999


Q ss_pred             EEEcccCCC-CHHHHHHHHHHHHhh
Q 024610          238 IRWQGFGMA-TPEELSSLLSCTSLL  261 (265)
Q Consensus       238 IRWagsG~a-t~~E~e~L~k~~~~L  261 (265)
                      |||+..+.. .+...+.+.+.++.|
T Consensus       135 I~~~~~~~~~~~~~~~eiL~~l~aL  159 (170)
T d1zofa1         135 VRHAVINDLPLGRNADEMLRMVDAL  159 (170)
T ss_dssp             EEEEEEESSSCCCHHHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHh
Confidence            999886543 233455555555555

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.89  E-value=3.9e-05  Score=65.87  Aligned_cols=122  Identities=15%  Similarity=0.156  Sum_probs=73.9

Q ss_pred             cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCCe
Q 024610           95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKNV  164 (265)
Q Consensus        95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~v  164 (265)
                      +..+|+|++.+.+|+ +.+.+.         ...+||..|+. |+.       +.||-.|..          .|.+ .++
T Consensus         4 Gd~aPdF~l~t~~G~-i~~~d~---------~~~kGk~vVLf-f~P-------~dftpvCttEl~~~~~~~~ef~~-~g~   64 (237)
T d2zcta1           4 GERFPEMEVTTDHGV-IKLPDH---------YVSQGKWFVLF-SHP-------ADFTPVCTTEFVSFARRYEDFQR-LGV   64 (237)
T ss_dssp             TSBCCCEEEEETTEE-EEETHH---------HHTTTCEEEEE-EES-------CSSCHHHHHHHHHHHHTHHHHHH-TTE
T ss_pred             CCCCCCeEEEcCCCC-EEechH---------hhcCCCEEEEE-EEC-------CCCCccCHHHHHHHHhhhhhhcc-CCc
Confidence            456899999999995 443211         12368887763 333       678777652          3333 379


Q ss_pred             eEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccC-----CcccEEEEEeCCCcEE
Q 024610          165 HLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILN-----LLTGYIFLLDKFGRIR  239 (265)
Q Consensus       165 qiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N-----~~vGYVyLVD~~grIR  239 (265)
                      ++|.||++.....     +.+. ..++..-..+    ....+ ..+....+-+++||.+     .-+.-+||||++|+||
T Consensus        65 ~vigiS~Ds~~sh-----~~w~-~~~~~~~~~~----l~fpl-lsD~~~~vak~yGv~~~~~~~~~~RatFIIDpdG~Ir  133 (237)
T d2zcta1          65 DLIGLSVDSVFSH-----IKWK-EWIERHIGVR----IPFPI-IADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIR  133 (237)
T ss_dssp             EEEEEESSCHHHH-----HHHH-HHHHHHHCCC----CCSCE-EECGGGHHHHHTTCC----CCTTCCEEEEECTTSBEE
T ss_pred             ceeeccCCcHHHH-----HHHh-hhhhhhcccc----ccccc-ccCcchHHHHHcCCccccccccceeeeEEECCCCEEE
Confidence            9999999874321     1211 1112111111    11222 1355788999999854     3456799999999999


Q ss_pred             EcccCCC
Q 024610          240 WQGFGMA  246 (265)
Q Consensus       240 WagsG~a  246 (265)
                      |...+..
T Consensus       134 ~~~~~~~  140 (237)
T d2zcta1         134 TMLYYPM  140 (237)
T ss_dssp             EEEECCT
T ss_pred             EEEEeCC
Confidence            9977654

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=8.7e-05  Score=61.75  Aligned_cols=137  Identities=14%  Similarity=0.110  Sum_probs=79.1

Q ss_pred             ccccCCCceee---CCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhH----------Hhhcc
Q 024610           94 AAVKFPDLDVS---YSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFF----------EAFSD  160 (265)
Q Consensus        94 ~AlyFPnl~~~---~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~----------e~~~~  160 (265)
                      -....|+|.+.   +-+|+++++.+            .+||..|+.++ -       ..||-.|.          +.|.+
T Consensus         7 VG~~AP~F~l~~~~d~~~~~v~L~d------------~~Gk~~vL~Fy-P-------~~~tp~C~~e~~~~~~~~~~f~~   66 (197)
T d1qmva_           7 IGKPAPDFKATAVVDGAFKEVKLSD------------YKGKYVVLFFY-P-------LDFTFVCPTEIIAFSNRAEDFRK   66 (197)
T ss_dssp             TTSBCCCCEEEEEETTEEEEEEGGG------------GTTSEEEEEEC-S-------CTTSSHHHHHHHHHHHTHHHHHT
T ss_pred             CCCcCCCCCCcceeCCCCcEEeHHH------------hCCCeEEEEEe-c-------ccccccchhhhHHHHHHHHHhcc
Confidence            45678999765   44666776542            36897665333 2       56666554          12232


Q ss_pred             CCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccE----EEEEeCCC
Q 024610          161 SKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGY----IFLLDKFG  236 (265)
Q Consensus       161 ~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGY----VyLVD~~g  236 (265)
                       -+++++.||.+.-..     -+.+ ....++...-+.   ....+ ..+....+-+++|+.+...|.    +||||++|
T Consensus        67 -~g~~vigIS~D~~~~-----~~~~-~~~~~~~~~~~~---~~fpl-l~D~~~~va~~ygv~~~~~g~~~R~tfiID~~g  135 (197)
T d1qmva_          67 -LGCEVLGVSVDSQFT-----HLAW-INTPRKEGGLGP---LNIPL-LADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKG  135 (197)
T ss_dssp             -TTEEEEEEESSCHHH-----HHHH-HTSCGGGTCCCS---CSSCE-EECTTCHHHHHTTCEETTTTEECEEEEEECTTS
T ss_pred             -CCcEEEEEecCCHHH-----HHhh-hcchhhhcCcCC---Cccce-EeccchHHHHHhCCCcccCCeeeEEEEEECCCC
Confidence             389999999986321     1111 111122111110   12333 246678899999998776665    99999999


Q ss_pred             cEEEcccCC-CCHHHHHHHHHHHHhh
Q 024610          237 RIRWQGFGM-ATPEELSSLLSCTSLL  261 (265)
Q Consensus       237 rIRWagsG~-at~~E~e~L~k~~~~L  261 (265)
                      +|||..... ..+.-++.+.++++.|
T Consensus       136 ~Ir~~~~~~~~~~r~~~E~lr~l~al  161 (197)
T d1qmva_         136 VLRQITVNDLPVGRSVDEALRLVQAF  161 (197)
T ss_dssp             BEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             cEEEEEecCCCcccCHHHHHHHHHhh
Confidence            999986654 2233333334444333

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.67  E-value=6.7e-05  Score=61.94  Aligned_cols=141  Identities=11%  Similarity=0.038  Sum_probs=79.3

Q ss_pred             ccCCCceeeC-CCCC--eeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcc--hhHHhhccCCCeeEEEEe
Q 024610           96 VKFPDLDVSY-SDRT--TLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSS--PFFEAFSDSKNVHLYEVS  170 (265)
Q Consensus        96 lyFPnl~~~~-l~G~--tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~--p~~e~~~~~~~vqiv~In  170 (265)
                      ...|+|.+.. .+|+  ++++.            .++||..|+.++-..+.--|....+.  ...+.|.+. +++++.||
T Consensus         5 ~~aP~F~~~a~~~g~~~~vsLs------------d~kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~-~~~v~gIS   71 (186)
T d1n8ja_           5 TKIKPFKNQAFKNGEFIEVTEK------------DTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKL-GVDVYSVS   71 (186)
T ss_dssp             CBCCCCEEEEEETTEEEEEEHH------------HHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHT-TEEEEEEE
T ss_pred             CcCCCCEeeeeeCCeeEEEeHH------------HhCCCeEEEEEEeccCCCccHHHHHHHHHhhhhcccc-cEEEEecc
Confidence            3569998765 3554  44433            24799866644322233233222221  112344443 79999999


Q ss_pred             cccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccE----EEEEeCCCcEEEcccCC-
Q 024610          171 FIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGY----IFLLDKFGRIRWQGFGM-  245 (265)
Q Consensus       171 ~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGY----VyLVD~~grIRWagsG~-  245 (265)
                      .+.-..     -+.+ ....+.. ..     ....+ ..+....+-+++|+.+...|+    +||||++|+|||..-.. 
T Consensus        72 ~Ds~~s-----h~~f-~~~~~~~-~~-----~~fpl-lsD~~~~v~~~yGv~~~~~g~~~r~tfiID~~G~Ir~~~v~~~  138 (186)
T d1n8ja_          72 TDTHFT-----HKAW-HSSSETI-AK-----IKYAM-IGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAE  138 (186)
T ss_dssp             SSCHHH-----HHHH-HHHCTTG-GG-----CCSEE-EECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECT
T ss_pred             ccCHHH-----HHHH-hcccccc-cc-----ccccc-cccHHHHHHHHhCCCcccCCcceeeEEEECchheEEEEeecCC
Confidence            866322     1222 1111110 00     12333 246678899999998776555    69999999999997443 


Q ss_pred             CCHHHHHHHHHHHHhhh
Q 024610          246 ATPEELSSLLSCTSLLL  262 (265)
Q Consensus       246 at~~E~e~L~k~~~~Ll  262 (265)
                      +.+.+++...++++.|.
T Consensus       139 ~~~r~~~eiL~~lkaLQ  155 (186)
T d1n8ja_         139 GIGRDASDLLRKIKAAQ  155 (186)
T ss_dssp             TBCCCHHHHHHHHHHHH
T ss_pred             CcccCHHHHHHHHHHHH
Confidence            44555555566666554

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=7.7e-05  Score=63.20  Aligned_cols=136  Identities=10%  Similarity=0.040  Sum_probs=79.7

Q ss_pred             cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhH----------HhhccCCCe
Q 024610           95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFF----------EAFSDSKNV  164 (265)
Q Consensus        95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~----------e~~~~~~~v  164 (265)
                      +...|+|++.+.+|+ +++.+.           ..+|..|+.+ +-       ..||-.|.          +.|.+ .++
T Consensus         4 Gd~APdF~l~~~~G~-v~Lsd~-----------~g~k~vVLfF-yP-------~dftpvC~~El~~~~~~~~~f~~-~g~   62 (220)
T d1prxa_           4 GDVAPNFEANTTVGR-IRFHDF-----------LGDSWGILFS-HP-------RDFTPVCTTELGRAAKLAPEFAK-RNV   62 (220)
T ss_dssp             TCBCCCCEEEETTEE-EEHHHH-----------HTTSEEEEEE-ES-------CSSCHHHHHHHHHHHHHHHHHHT-TTE
T ss_pred             CCCCCCcEeecCCCC-EEeHHH-----------cCCCeEEEEE-EC-------CCCCCcchhhHHHHHHHHHHhhc-ccc
Confidence            346899999999996 766532           2246666533 22       45655554          23333 379


Q ss_pred             eEEEEecccchhhccccchHHHHHHHHhcCC---CCCccccceeEEEcCChHHHHHHhcccCCcc----------cEEEE
Q 024610          165 HLYEVSFIDSWLLCRSPIKRILLKIMRKSKD---AGENVLQRQIVYSFGDHYYFRKELKILNLLT----------GYIFL  231 (265)
Q Consensus       165 qiv~In~~e~~lk~~~~lk~~~~~~lrk~~p---~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~v----------GYVyL  231 (265)
                      +++.||++.....     ..+ ...+.....   ...   ....+ ..+....+-+++||.+...          -.+||
T Consensus        63 ~v~giS~Ds~~sh-----~~~-~~~~~~~~~~~~~~~---l~fpl-lsD~~~~va~~ygv~~~~~~~~~~~~~~~RatFI  132 (220)
T d1prxa_          63 KLIALSIDSVEDH-----LAW-SKDINAYNSEEPTEK---LPFPI-IDDRNRELAILLGMLDPAEKDEKGMPVTARVVFV  132 (220)
T ss_dssp             EEEEEESSCHHHH-----HHH-HHHHHHHTTSCCCSC---CSSCE-EECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEE
T ss_pred             eeeccccccccch-----hhh-hhhhhhccccccccC---ccccc-ccCcccHHHHHhCCccccccccccceeeeEEEEE
Confidence            9999998764321     111 111222111   111   12223 2466789999999986543          34999


Q ss_pred             EeCCCcEEEcccCC-CCHHHHHHHHHHHHhh
Q 024610          232 LDKFGRIRWQGFGM-ATPEELSSLLSCTSLL  261 (265)
Q Consensus       232 VD~~grIRWagsG~-at~~E~e~L~k~~~~L  261 (265)
                      ||++|+|||.-... ..+.+++.+.++++.|
T Consensus       133 ID~~g~Ir~~~~~~~~~gR~~dEiLr~l~al  163 (220)
T d1prxa_         133 FGPDKKLKLSILYPATTGRNFDEILRVVISL  163 (220)
T ss_dssp             ECTTSBEEEEEECCTTBCCCHHHHHHHHHHH
T ss_pred             EcCccceeEEEEecCCcccchHHHHHHHHHH
Confidence            99999999997665 3333444444444444

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=97.33  E-value=0.0005  Score=58.04  Aligned_cols=142  Identities=11%  Similarity=0.091  Sum_probs=78.2

Q ss_pred             cccCCCceeeCCCCC-eeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcc--hhHHhhccCCCeeEEEEec
Q 024610           95 AVKFPDLDVSYSDRT-TLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSS--PFFEAFSDSKNVHLYEVSF  171 (265)
Q Consensus        95 AlyFPnl~~~~l~G~-tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~--p~~e~~~~~~~vqiv~In~  171 (265)
                      +..+|+|++.+.+|. ++.+.+           -+.||..|+.++=..+.--|+...+.  ...+.|.+. +++++-||.
T Consensus         5 Gd~aPdF~l~~~~~~g~i~l~d-----------~~~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~-~~~vigiS~   72 (219)
T d1xcca_           5 GATFPNFTAKASGIDGDFELYK-----------YIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKL-NCKLIGFSC   72 (219)
T ss_dssp             TCBCCCCEECBTTCSSCEEHHH-----------HTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTT-TEEEEEEES
T ss_pred             CCCCCCcEeeccCCCCcEEeHH-----------HcCCCeEEEEEEcCCCCcccchhHHHHHHhhhhhccc-ceEEEeecC
Confidence            457899998755332 455432           34688877744322333333333322  222445544 799999998


Q ss_pred             ccchhhccccchHHHHHHHHh--cCCCCCccccceeEEEcCChHHHHHHhcccCCccc----------EEEEEeCCCcEE
Q 024610          172 IDSWLLCRSPIKRILLKIMRK--SKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTG----------YIFLLDKFGRIR  239 (265)
Q Consensus       172 ~e~~lk~~~~lk~~~~~~lrk--~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vG----------YVyLVD~~grIR  239 (265)
                      +.-..     -+.| ...++.  ++..     ....+. .+....+-+++||.+..-|          -+||||++|+||
T Consensus        73 Ds~~s-----h~~w-~~~~~~~~~~~~-----l~fpll-sD~~~~va~~ygv~~~~~~~~~~~~~~~R~tFiIDp~g~Ir  140 (219)
T d1xcca_          73 NSKES-----HDKW-IEDIKYYGKLNK-----WEIPIV-CDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIK  140 (219)
T ss_dssp             SCHHH-----HHHH-HHHHHHHHTCSC-----CCCCEE-ECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEE
T ss_pred             ccHhH-----HhHH-hhhhHhhcccCC-----CCcccc-cccccHHHHHhCCcccccccCcccceeeeeeEEEcCcceEE
Confidence            76322     1111 222222  1111     123332 3666789999999765432          689999999999


Q ss_pred             EcccC-CCCHHHHHHHHHHHHh
Q 024610          240 WQGFG-MATPEELSSLLSCTSL  260 (265)
Q Consensus       240 WagsG-~at~~E~e~L~k~~~~  260 (265)
                      |.... ..++..++.+.+.++.
T Consensus       141 ~~~~~~~~~gr~~~EiLr~l~a  162 (219)
T d1xcca_         141 ATVLYPATTGRNAHEILRVLKS  162 (219)
T ss_dssp             EEEEECTTBCCCHHHHHHHHHH
T ss_pred             EEEEeCCCcccCHHHHHHHHHH
Confidence            98643 3444334444444433

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=97.29  E-value=0.00084  Score=53.91  Aligned_cols=134  Identities=15%  Similarity=0.109  Sum_probs=73.4

Q ss_pred             CCCceeeC----CCCCeeeccCCCCCCccCccccCCC-ceEEEEEeeeccchHHHhhhcchhH----------HhhccCC
Q 024610           98 FPDLDVSY----SDRTTLKLPVCSSGDVANADKAAIP-KVSLVCLTFRASSQAMVDSWSSPFF----------EAFSDSK  162 (265)
Q Consensus        98 FPnl~~~~----l~G~tl~~p~~~~~~~~~t~~~l~g-KvSIV~l~~~~~gq~~~~sw~~p~~----------e~~~~~~  162 (265)
                      -|+|.+.+    -+|+++++.+.            .| |..||.++ .       ..||..|.          +.|.+ .
T Consensus         2 APdF~l~~~~gd~~~~~vsL~d~------------~g~k~vVl~Fy-P-------~~~tp~Ct~e~~~f~~~~~~f~~-~   60 (170)
T d2h01a1           2 APSFKAEAVFGDNTFGEVSLSDF------------IGKKYVLLYFY-P-------LDFTFVCPSEIIALDKALDSFKE-R   60 (170)
T ss_dssp             CCCCEEEEECTTSCEEEEEGGGG------------TTTCEEEEEEC-S-------CSSCSSCCHHHHHHHHTHHHHHH-T
T ss_pred             CCCeEeeeecCCCCccEEehHHH------------CCCCeEEEEEE-C-------CCCCCccchhhHHHhhhhhhhhc-C
Confidence            38898874    44557776532            35 66555432 2       45655443          22333 4


Q ss_pred             CeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccC---CcccEEEEEeCCCcEE
Q 024610          163 NVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILN---LLTGYIFLLDKFGRIR  239 (265)
Q Consensus       163 ~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N---~~vGYVyLVD~~grIR  239 (265)
                      ++++|.||.+.-..     -+.+ ....+..-...   -....+ ..+....+.+++|+.+   ....-+||||++|+||
T Consensus        61 g~~vigIS~D~~~~-----~~~~-~~~~~~~~~~~---~~~f~l-lsD~~~~~~~~ygv~~~~~~~~R~tfiId~~G~I~  130 (170)
T d2h01a1          61 NVELLGCSVDSKFT-----HLAW-KKTPLSQGGIG---NIKHTL-ISDISKSIARSYDVLFNESVALRAFVLIDKQGVVQ  130 (170)
T ss_dssp             TEEEEEEESSCHHH-----HHHH-HTSCGGGTCCC---SCSSEE-EECTTSHHHHHTTCEETTTEECCEEEEECTTSBEE
T ss_pred             CeeEecccCCcHHH-----HHhH-hhhhhhhcccc---ccCCce-eEcCccHHHHHhCCccccccceeeeEEEcCCCeEE
Confidence            79999999886321     1111 00011100000   011222 2355678889999854   2345789999999999


Q ss_pred             EcccCC-CCHHHHHHHHHHHHhhh
Q 024610          240 WQGFGM-ATPEELSSLLSCTSLLL  262 (265)
Q Consensus       240 WagsG~-at~~E~e~L~k~~~~Ll  262 (265)
                      |.-.+. ..+...+.+.+.++.|.
T Consensus       131 ~~~~~~~~~~~~~~eil~~l~~lq  154 (170)
T d2h01a1         131 HLLVNNLALGRSVDEILRLIDALQ  154 (170)
T ss_dssp             EEEEGGGSSGGGHHHHHHHHHHHH
T ss_pred             EEEEecCCCCCCHHHHHHHHHHhh
Confidence            987443 44444555555555543

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.00086  Score=54.96  Aligned_cols=54  Identities=9%  Similarity=-0.001  Sum_probs=38.7

Q ss_pred             CCCceeeCCC-CCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCCeeE
Q 024610           98 FPDLDVSYSD-RTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKNVHL  166 (265)
Q Consensus        98 FPnl~~~~l~-G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~vqi  166 (265)
                      |-++++++++ |+++++..            .+|||.||.-+         +|||.++..          .+.+ .++.+
T Consensus         3 iydf~~~~l~~g~~vsL~~------------ykGKvvLivN~---------AS~Cg~t~~~y~~L~~L~~ky~~-~g~~I   60 (184)
T d2f8aa1           3 VYAFSARPLAGGEPVSLGS------------LRGKVLLIENV---------ASLGGTTVRDYTQMNELQRRLGP-RGLVV   60 (184)
T ss_dssp             GGGCEECBTTCSSCEEGGG------------GTTSEEEEEEE---------CSSSTTHHHHHHHHHHHHHHHGG-GTEEE
T ss_pred             eeeeEEEECCCCCEecHHH------------cCCCEEEEEEe---------cccCCcchhhhHHHHHhhhhhcc-cceeE
Confidence            4578899986 67887653            47999999655         999997642          1222 46999


Q ss_pred             EEEeccc
Q 024610          167 YEVSFID  173 (265)
Q Consensus       167 v~In~~e  173 (265)
                      +.++..+
T Consensus        61 l~fP~nq   67 (184)
T d2f8aa1          61 LGFPCNQ   67 (184)
T ss_dssp             EEEECCC
T ss_pred             EEeeccc
Confidence            9998654

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.74  E-value=0.005  Score=45.76  Aligned_cols=46  Identities=11%  Similarity=0.132  Sum_probs=31.7

Q ss_pred             hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHHHHHhhhcC
Q 024610          212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLSCTSLLLEG  264 (265)
Q Consensus       212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k~~~~Ll~e  264 (265)
                      ..++.+.+||..  +|.+.+.. +|++.+...|. .+++   +..-++.+++|
T Consensus        68 ~~~l~~~~~V~~--~Pt~~~~~-~G~~v~~~~G~-~~~~---l~~~l~~~ike  113 (113)
T d1r26a_          68 NSEIVSKCRVLQ--LPTFIIAR-SGKMLGHVIGA-NPGM---LRQKLRDIIKD  113 (113)
T ss_dssp             CHHHHHHTTCCS--SSEEEEEE-TTEEEEEEESS-CHHH---HHHHHHHHHHC
T ss_pred             chhhHHHccccC--CCEEEEEE-CCEEEEEEeCC-CHHH---HHHHHHHHhcC
Confidence            355777888886  88877775 99999999994 5543   44445555543

>d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Plant peroxiredoxin
species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]

Probab=96.68  E-value=0.0017  Score=51.31  Aligned_cols=124  Identities=11%  Similarity=0.106  Sum_probs=72.7

Q ss_pred             cccccCCCceeeCC----CCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhH---HhhccCCCee
Q 024610           93 LAAVKFPDLDVSYS----DRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFF---EAFSDSKNVH  165 (265)
Q Consensus        93 ~~AlyFPnl~~~~l----~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~---e~~~~~~~vq  165 (265)
                      ..+..+|++++..+    +|++++           +.+.++||..||.++=.++.--|....+..+.   +.+......+
T Consensus         5 ~vGd~~Pdf~l~~~~~~~~~~~~~-----------l~d~~~gk~vVl~f~P~afT~~Ct~e~~~~~~~~~d~~~~~g~~~   73 (162)
T d1tp9a1           5 AVGDVLPDGKLAYFDEQDQLQEVS-----------VHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTE   73 (162)
T ss_dssp             CTTCBCCCCEEEEECTTSCEEEEE-----------SHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCC
T ss_pred             CCCCCCCCeEEEeecCCCCceEEE-----------HHHHhCCCeEEEEEEecccchhhhhhcchHHHHhhhHHHHcCCcc
Confidence            34567899886533    223333           33456788877765544444455444444333   3445555678


Q ss_pred             EEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCc---------ccEEEEEeCCC
Q 024610          166 LYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLL---------TGYIFLLDKFG  236 (265)
Q Consensus       166 iv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~---------vGYVyLVD~~g  236 (265)
                      ++-|++.+-.....     |     ....+..     .......+..-++-+++|+....         -=|+|||| +|
T Consensus        74 v~~isvd~~~~~~~-----~-----~~~~~~~-----~~~~~lsD~~~~~~~~~g~~~~~~~~g~g~~~~R~tfiId-dg  137 (162)
T d1tp9a1          74 ILCISVNDPFVMKA-----W-----AKSYPEN-----KHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DL  137 (162)
T ss_dssp             EEEEESSCHHHHHH-----H-----HHTCTTC-----SSEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TT
T ss_pred             eeeeeccchhhhhh-----h-----hhhcccc-----cccccccchhhHHHhhhhhccccccccCCcEEEEEEEEEE-CC
Confidence            99999977554222     2     2222221     12222345567788899976321         24899999 89


Q ss_pred             cEEEccc
Q 024610          237 RIRWQGF  243 (265)
Q Consensus       237 rIRWags  243 (265)
                      +|++...
T Consensus       138 ~I~~~~v  144 (162)
T d1tp9a1         138 KVKAANI  144 (162)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9999865

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=96.67  E-value=0.0025  Score=46.90  Aligned_cols=40  Identities=25%  Similarity=0.264  Sum_probs=31.7

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCcEEEc--ccCCCCHHHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGRIRWQ--GFGMATPEELSSL  254 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWa--gsG~at~~E~e~L  254 (265)
                      .++-+.+++.-  +|.++++|++|++...  -.|+.+++++...
T Consensus        72 ~~l~~~~~v~~--~Pt~~~~~~~G~~~~~~~~~G~~~~~~~~~~  113 (117)
T d2fwha1          72 VALLKHLNVLG--LPTILFFDGQGQEHPQARVTGFMDAETFSAH  113 (117)
T ss_dssp             HHHHHHTTCCS--SSEEEEECTTSCBCGGGCBCSCCCHHHHHHH
T ss_pred             HHHHhhhehhh--ceEEEEEeCCCcEEecccccccCCHHHHHHH
Confidence            45667788875  9999999999999864  4799999887544

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.016  Score=42.41  Aligned_cols=38  Identities=16%  Similarity=-0.136  Sum_probs=28.6

Q ss_pred             hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHH
Q 024610          212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSS  253 (265)
Q Consensus       212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~  253 (265)
                      ..++-+.+||..  +|.+.+. .+|+..+.-.| +++++++.
T Consensus        63 ~~~l~~~~~v~~--~Pt~~~~-~~G~~v~~~~G-~~~~~l~~  100 (107)
T d1gh2a_          63 CQGTAATNNISA--TPTFQFF-RNKVRIDQYQG-ADAVGLEE  100 (107)
T ss_dssp             SHHHHHHTTCCS--SSEEEEE-ETTEEEEEEES-SCHHHHHH
T ss_pred             chhhhhhcCcee--ceEEEEE-ECCEEEEEEeC-CCHHHHHH
Confidence            355667788876  8877777 59999999999 57777654

>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.026  Score=44.06  Aligned_cols=123  Identities=13%  Similarity=0.062  Sum_probs=66.3

Q ss_pred             ccccCCCceeeC-CCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhH---HhhccCCCeeEEEE
Q 024610           94 AAVKFPDLDVSY-SDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFF---EAFSDSKNVHLYEV  169 (265)
Q Consensus        94 ~AlyFPnl~~~~-l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~---e~~~~~~~vqiv~I  169 (265)
                      -...+|++.+.+ -+|+++++.           +.++||..|+.++=.++.--|+..-+..+.   +.|.+.....++-|
T Consensus         5 VGd~aP~f~l~~~~~~~~v~l~-----------d~~~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~~g~~~i~~~   73 (161)
T d1hd2a_           5 VGDAIPAVEVFEGEPGNKVNLA-----------ELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACL   73 (161)
T ss_dssp             TTCBCCCCEEECSSTTCEEEHH-----------HHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEE
T ss_pred             CCCcCCCeEEEecCCCcEEEhH-----------HHhCCCeEEEEEEeccccccchhhhhhHHHhhhHHHHHcCCeEEEEE
Confidence            356789999865 557887654           234688877755433333333222222222   23444433456667


Q ss_pred             ecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCccc-----------EEEEEeCCCcE
Q 024610          170 SFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTG-----------YIFLLDKFGRI  238 (265)
Q Consensus       170 n~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vG-----------YVyLVD~~grI  238 (265)
                      ++.+-+...     .+     .+.....    ....+ .-+.+..+-+++|+.....+           |++|+| +|+|
T Consensus        74 s~~~~~~~~-----~~-----~~~~~~~----~~~~l-lsD~~~~~a~~~g~~~~~~~~g~~~~~~s~r~~~I~~-~G~I  137 (161)
T d1hd2a_          74 SVNDAFVTG-----EW-----GRAHKAE----GKVRL-LADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQ-DGIV  137 (161)
T ss_dssp             ESSCHHHHH-----HH-----HHHTTCT----TTCEE-EECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEE-TTEE
T ss_pred             ecCchhhhh-----hh-----hhhcccc----ccccc-ccCCcceeeeeeeeeeccccCccccccEEeEEEEEEC-CCEE
Confidence            776644321     11     1111111    01122 23567889999998754433           466665 9999


Q ss_pred             EEccc
Q 024610          239 RWQGF  243 (265)
Q Consensus       239 RWags  243 (265)
                      +|..-
T Consensus       138 ~~~~v  142 (161)
T d1hd2a_         138 KALNV  142 (161)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99753

>d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: N-terminal, Prx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=95.73  E-value=0.02  Score=44.98  Aligned_cols=126  Identities=13%  Similarity=0.082  Sum_probs=70.7

Q ss_pred             ccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH---hhccCCCeeEEEEe
Q 024610           94 AAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE---AFSDSKNVHLYEVS  170 (265)
Q Consensus        94 ~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e---~~~~~~~vqiv~In  170 (265)
                      .+..+|++++....|....        ...+.+.++||-.|+..+=.++.--|+..++..+.+   .+.....-.+|-+.
T Consensus         3 ~Gd~~Pdftl~~~~~~~~~--------~~slsd~~~gk~VVL~f~P~afTp~Ct~e~~~~~~~~~~~~~~~~~~~vv~~~   74 (163)
T d1nm3a2           3 EGKKVPQVTFRTRQGDKWV--------DVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVS   74 (163)
T ss_dssp             TTSBCCCCEEEEEETTEEE--------EEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCCCCCeEEEEEcCCCce--------EEEHHHHhCCCeEEEEEEeccccccchhhhhhhhhhcchhhhhhcccceeeee
Confidence            3457899998877664321        012334557887777555445556677777665543   23333334566666


Q ss_pred             cccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccC---------CcccEEEEEeCCCcEEEc
Q 024610          171 FIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILN---------LLTGYIFLLDKFGRIRWQ  241 (265)
Q Consensus       171 ~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N---------~~vGYVyLVD~~grIRWa  241 (265)
                      ..+.+...     .++    +. ....      .....-+..-.+-+++|+..         ..--|+|||| +|+|+|+
T Consensus        75 s~d~~~~~-----a~~----~~-~~~~------~~~llsD~~~~~~~~~g~~~~~~~~g~g~~s~R~~~Iid-dG~I~~~  137 (163)
T d1nm3a2          75 VNDTFVMN-----AWK----ED-EKSE------NISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLVK-NGVVEKM  137 (163)
T ss_dssp             SSCHHHHH-----HHH----HH-TTCT------TSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEEEE-TTEEEEE
T ss_pred             cCCHHHHH-----HHh----hh-hccC------ceeeeccCChHHHHHhhhhccccccccccccceEEEEEe-CCEEEEE
Confidence            66655422     221    11 1111      11112244456667776643         3456899999 9999987


Q ss_pred             ccC
Q 024610          242 GFG  244 (265)
Q Consensus       242 gsG  244 (265)
                      .-.
T Consensus       138 ~v~  140 (163)
T d1nm3a2         138 FIE  140 (163)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            543

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.61  E-value=0.047  Score=39.96  Aligned_cols=42  Identities=24%  Similarity=0.247  Sum_probs=30.6

Q ss_pred             CChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610          210 GDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL  255 (265)
Q Consensus       210 g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~  255 (265)
                      +++.++-+.+|+.-  +|.+++. .+|++.+.-.| +++++++.+.
T Consensus        68 ~~~~~l~~~~~V~~--~Pt~~~~-~~G~~v~~~~G-~~~~~l~~~i  109 (114)
T d1xfla_          68 DELKSVASDWAIQA--MPTFMFL-KEGKILDKVVG-AKKDELQSTI  109 (114)
T ss_dssp             TTSHHHHHHTTCCS--SSEEEEE-ETTEEEEEEES-CCHHHHHHHH
T ss_pred             eeceeeccccceee--eEEEEEE-ECCEEEEEEeC-cCHHHHHHHH
Confidence            33456667788875  8877777 49999998888 4677776653

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=95.60  E-value=0.073  Score=38.10  Aligned_cols=43  Identities=12%  Similarity=0.069  Sum_probs=33.5

Q ss_pred             CChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610          210 GDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL  255 (265)
Q Consensus       210 g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~  255 (265)
                      +...++-+.+++.-  +|-+.+++ +|++.+.-.|..+.+++....
T Consensus        60 d~~~~l~~~~~V~~--~Pt~~~~~-~G~~v~~~~G~~~~~~l~~~i  102 (107)
T d1dbya_          60 DESPNVASEYGIRS--IPTIMVFK-GGKKCETIIGAVPKATIVQTV  102 (107)
T ss_dssp             TTCHHHHHHHTCCS--SCEEEEES-SSSEEEEEESCCCHHHHHHHH
T ss_pred             ccchhHHHHhcccc--eEEEEEEE-CCeEEEEEeCCCCHHHHHHHH
Confidence            33456777788875  88888887 899999999999988765543

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.54  E-value=0.084  Score=38.13  Aligned_cols=42  Identities=17%  Similarity=0.108  Sum_probs=29.2

Q ss_pred             CChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610          210 GDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL  255 (265)
Q Consensus       210 g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~  255 (265)
                      ++..++-+.++|..  +|-++++ .+|++...-.|. .+++++.+.
T Consensus        66 d~~~~l~~~~~V~~--~Pt~~~~-~~G~~v~~~~G~-~~~~l~~~I  107 (111)
T d1xwaa_          66 DECEDIAMEYNISS--MPTFVFL-KNGVKVEEFAGA-NAKRLEDVI  107 (111)
T ss_dssp             TTCHHHHHHTTCCS--SSEEEEE-ETTEEEEEEESC-CHHHHHHHH
T ss_pred             ecCcchhhcCCCcc--ccEEEEE-ECCEEEEEEeCC-CHHHHHHHH
Confidence            44456667778875  7766666 499999888885 566666544

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=95.51  E-value=0.033  Score=40.73  Aligned_cols=42  Identities=17%  Similarity=0.226  Sum_probs=31.5

Q ss_pred             CChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610          210 GDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL  255 (265)
Q Consensus       210 g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~  255 (265)
                      ++..++.+.++|..  +|-+++.. +|++...-.| ++++++..+.
T Consensus        66 d~~~~l~~~~~I~~--~Pt~~~~k-~G~~v~~~~G-~~~~~l~~~i  107 (113)
T d1ti3a_          66 DELKAVAEEWNVEA--MPTFIFLK-DGKLVDKTVG-ADKDGLPTLV  107 (113)
T ss_dssp             TTCHHHHHHHHCSS--TTEEEEEE-TTEEEEEEEC-CCTTHHHHHH
T ss_pred             eccccccccCeecc--cceEEEEE-CCEEEEEEcC-CCHHHHHHHH
Confidence            34466778888886  89777776 9999999999 5666665543

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.27  E-value=0.065  Score=38.47  Aligned_cols=39  Identities=15%  Similarity=0.054  Sum_probs=27.7

Q ss_pred             ChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHH
Q 024610          211 DHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSS  253 (265)
Q Consensus       211 ~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~  253 (265)
                      ++.++-+.+++..  +|-+.+.. +|++.-.-.|. ++++++.
T Consensus        61 ~~~~~~~~~~V~~--~Pt~~~~~-~G~~v~~~~G~-~~~~l~~   99 (105)
T d2ifqa1          61 DCQDVASECEVKC--MPTFQFFK-KGQKVGEFSGA-NKEKLEA   99 (105)
T ss_dssp             TCHHHHHHTTCCB--SSEEEEEE-TTEEEEEEESC-CHHHHHH
T ss_pred             cCHhHHHHcCceE--EEEEEEEE-CCEEEEEEeCC-CHHHHHH
Confidence            3455666777775  78777775 89999998884 6666554

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=95.12  E-value=0.11  Score=36.73  Aligned_cols=44  Identities=9%  Similarity=0.099  Sum_probs=35.0

Q ss_pred             cCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610          209 FGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL  255 (265)
Q Consensus       209 ~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~  255 (265)
                      .+++.++-+.++|..  +|-+++.. +|+..+.-.|..+++++..+.
T Consensus        57 ~d~~~~l~~~~~V~~--~Pt~~~~~-~G~~v~~~~G~~~~~~l~~~i  100 (104)
T d1fb6a_          57 TDEAPGIATQYNIRS--IPTVLFFK-NGERKESIIGAVPKSTLTDSI  100 (104)
T ss_dssp             TTTCHHHHHHTTCCS--SSEEEEEE-TTEEEEEEEECCCHHHHHHHH
T ss_pred             cccchhhhhhcceee--eeEEEEEE-cCeEEEEEeCCCCHHHHHHHH
Confidence            355677888899886  88777775 899999999999988876654

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.69  E-value=0.071  Score=39.61  Aligned_cols=76  Identities=14%  Similarity=0.091  Sum_probs=48.5

Q ss_pred             CCceEEEEEeeeccchHHHhhhcchhHH------hh-ccC-CCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCcc
Q 024610          129 IPKVSLVCLTFRASSQAMVDSWSSPFFE------AF-SDS-KNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENV  200 (265)
Q Consensus       129 ~gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~-~~~-~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~  200 (265)
                      .||+.+|  .|++.-...-.+||.||..      .+ ... .+++++.|++.+.--        +               
T Consensus        20 ~gk~v~v--~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~~~~~~vdv~~~~~--------~---------------   74 (119)
T d1woua_          20 NGKTIFA--YFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPY--------W---------------   74 (119)
T ss_dssp             TTSEEEE--EEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHH--------H---------------
T ss_pred             CCCEEEE--EEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCceEEEEEECCCCcc--------c---------------
Confidence            5787666  4554322223579999873      22 333 358999999876210        0               


Q ss_pred             ccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEE
Q 024610          201 LQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIR  239 (265)
Q Consensus       201 l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIR  239 (265)
                              .+.+..+++.++|..  +|.+++++..+|+.
T Consensus        75 --------~d~~~~l~~~~~V~~--iPT~i~~~~g~~l~  103 (119)
T d1woua_          75 --------KDPNNDFRKNLKVTA--VPTLLKYGTPQKLV  103 (119)
T ss_dssp             --------HCTTCHHHHHHCCCS--SSEEEETTSSCEEE
T ss_pred             --------chhhhhHHHhCCeEE--EEEEEEEECCeEEe
Confidence                    123356889999987  99999998666664

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=94.40  E-value=0.28  Score=34.83  Aligned_cols=41  Identities=20%  Similarity=0.100  Sum_probs=32.7

Q ss_pred             hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610          212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL  255 (265)
Q Consensus       212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~  255 (265)
                      ..++-+.++|..  +|.+++++ +|++...-.|..+.+++..+.
T Consensus        63 ~~~l~~~~~I~~--~Pt~~~~~-~g~~v~~~~G~~~~~~l~~~i  103 (108)
T d1thxa_          63 NPTTVKKYKVEG--VPALRLVK-GEQILDSTEGVISKDKLLSFL  103 (108)
T ss_dssp             CHHHHHHTTCCS--SSEEEEEE-TTEEEEEEESCCCHHHHHHHH
T ss_pred             cHHHHHHhcccC--CCEEEEEE-CCEEEEEEeCCCCHHHHHHHH
Confidence            455667788875  89888887 899999889999988876554

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.26  E-value=0.26  Score=34.80  Aligned_cols=38  Identities=8%  Similarity=0.040  Sum_probs=30.3

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSS  253 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~  253 (265)
                      .++-+.+||..  +|- ++++.+|++.....|..+.+++..
T Consensus        63 ~~l~~~~~V~~--vPT-i~i~~~G~~~~~~~G~~~~~~~~~  100 (107)
T d1a8la2          63 PEWADQYNVMA--VPK-IVIQVNGEDRVEFEGAYPEKMFLE  100 (107)
T ss_dssp             HHHHHHTTCCS--SCE-EEEEETTEEEEEEESCCCHHHHHH
T ss_pred             ccccccccccc--ceE-EEEEeCCeEEEEEECCCCHHHHHH
Confidence            56777788876  885 566779999999999999888744

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=94.26  E-value=0.24  Score=35.02  Aligned_cols=39  Identities=18%  Similarity=0.140  Sum_probs=29.2

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSL  254 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L  254 (265)
                      .++-+.++|.-  +|-+++.. +|+..+...|+.+.++++..
T Consensus        61 ~~~~~~~~V~~--~Pt~~~~~-~G~~~~~~~G~~~~~~l~~~   99 (105)
T d1nw2a_          61 PETTSQFGIMS--IPTLILFK-GGEPVKQLIGYQPKEQLEAQ   99 (105)
T ss_dssp             HHHHHHTTCCB--SSEEEEEE-TTEEEEEEESCCCHHHHHHH
T ss_pred             cccHHHCCcce--eeEEEEEE-CCEEEEEEECCCCHHHHHHH
Confidence            34455667775  77777775 89999999999998887543

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=94.21  E-value=0.28  Score=35.45  Aligned_cols=39  Identities=15%  Similarity=0.083  Sum_probs=29.2

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL  255 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~  255 (265)
                      .++-+.+++.-  +|.++++. +|+....-.| +++++++.+.
T Consensus        68 ~~l~~~~~v~~--~Pt~~~~~-~G~~v~~~~G-~~~~~l~~~i  106 (112)
T d1ep7a_          68 AAVAEAAGITA--MPTFHVYK-DGVKADDLVG-ASQDKLKALV  106 (112)
T ss_dssp             HHHHHHHTCCB--SSEEEEEE-TTEEEEEEES-CCHHHHHHHH
T ss_pred             ccccccccccC--CCEEEEEE-CCEEEEEEeC-cCHHHHHHHH
Confidence            45667778774  88877775 9999999999 5777776654

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=94.20  E-value=0.29  Score=34.65  Aligned_cols=43  Identities=14%  Similarity=0.159  Sum_probs=31.5

Q ss_pred             ChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610          211 DHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS  256 (265)
Q Consensus       211 ~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k  256 (265)
                      ....+-+.+|+..  +|-+++.. +|++...-.|..+.+++..+.+
T Consensus        62 ~~~~l~~~~~v~~--~PT~~~~~-~G~~v~~~~G~~~~~~l~~~i~  104 (108)
T d2trxa_          62 QNPGTAPKYGIRG--IPTLLLFK-NGEVAATKVGALSKGQLKEFLD  104 (108)
T ss_dssp             TCTTHHHHTTCCS--SSEEEEEE-TTEEEEEEESCCCHHHHHHHHH
T ss_pred             chhhHHHHhCCCc--EEEEEEEE-CCEEEEEEeCCCCHHHHHHHHH
Confidence            3445667778876  88666654 8999998999988888766543

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.03  E-value=0.22  Score=35.25  Aligned_cols=41  Identities=12%  Similarity=0.020  Sum_probs=28.3

Q ss_pred             CChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHH
Q 024610          210 GDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSL  254 (265)
Q Consensus       210 g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L  254 (265)
                      ++..++-+.++|..  +|-+.+.. +|+....-.|. ++++++.+
T Consensus        58 d~~~~~~~~~~V~~--~Pt~i~~k-~G~~v~~~~G~-~~~~l~~~   98 (103)
T d1syra_          58 DEVSEVTEKENITS--MPTFKVYK-NGSSVDTLLGA-NDSALKQL   98 (103)
T ss_dssp             TTTHHHHHHTTCCS--SSEEEEEE-TTEEEEEEESC-CHHHHHHH
T ss_pred             ccCcceeeeeeeec--ceEEEEEE-CCEEEEEEeCc-CHHHHHHH
Confidence            34456778888886  88655554 89998777784 56665544

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=94.00  E-value=0.15  Score=37.15  Aligned_cols=41  Identities=17%  Similarity=0.077  Sum_probs=29.9

Q ss_pred             hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610          212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS  256 (265)
Q Consensus       212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k  256 (265)
                      +.++-+.+||..  +|-+.+.. +|++...-.|.. ++++....+
T Consensus        68 ~~~l~~~~~V~~--~Pt~~~~k-~G~~v~~~~G~~-~~~l~e~i~  108 (112)
T d1f9ma_          68 NKTLAKELGIRV--VPTFKILK-ENSVVGEVTGAK-YDKLLEAIQ  108 (112)
T ss_dssp             THHHHHHHCCSS--SSEEEEEE-TTEEEEEEESSC-HHHHHHHHH
T ss_pred             chhhHhheeecc--CCEEEEEE-CCEEEEEEeCCC-HHHHHHHHH
Confidence            456778899986  88888884 999999999974 444444333

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=93.64  E-value=0.14  Score=37.21  Aligned_cols=40  Identities=15%  Similarity=0.133  Sum_probs=33.8

Q ss_pred             HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610          213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL  255 (265)
Q Consensus       213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~  255 (265)
                      .++++.+||..  +|=+++++ +|++...-.|..+++|++.+.
T Consensus        74 ~~~~~~~~V~~--~PTli~~~-~gk~~~~~~G~~~~~el~~fl  113 (115)
T d1zmaa1          74 QAFRSRYGIPT--VPGFVHIT-DGQINVRCDSSMSAQEIKDFA  113 (115)
T ss_dssp             HHHHHHHTCCS--SCEEEEEE-TTEEEEECCTTCCHHHHHHHH
T ss_pred             ccccccccccc--ccEEEEEE-CCEEEEEEcCCCCHHHHHHHH
Confidence            45788889886  88777776 899999999999999998764

>d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=88.86  E-value=1.7  Score=34.49  Aligned_cols=103  Identities=15%  Similarity=0.074  Sum_probs=59.1

Q ss_pred             CccccCCCceEEEEEeeeccchHHHhhhcchhHH---hhc-cCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCC
Q 024610          123 NADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE---AFS-DSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGE  198 (265)
Q Consensus       123 ~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e---~~~-~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~  198 (265)
                      ++.+.++||-.||.-.=.++---|...-+.+|.+   .|. ...--+++-|++.+.+.+.     .|     .+..... 
T Consensus        35 ~~~d~f~~KkVvl~~vPgAFTp~Cs~~hlp~y~~~~d~f~k~~gvd~I~~iSvnD~fv~~-----aW-----~~~~~~~-  103 (179)
T d1xiya1          35 DTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNFDDIYCITNNDIYVLK-----SW-----FKSMDIK-  103 (179)
T ss_dssp             EHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCCSEEEEEESSCHHHHH-----HH-----HHHTTCC-
T ss_pred             eHHHHhCCCeEEEEEcccccCCccchhhCcchhhhHHHHHHhcCCceEEEEecCCHHHHH-----HH-----HhhcCcc-
Confidence            5566777875555322223334444444544443   343 3333479999999977633     33     2322221 


Q ss_pred             ccccceeEEEcCChHHHHHHhcccCCc---------ccEEEEEeCCCcEEEcc
Q 024610          199 NVLQRQIVYSFGDHYYFRKELKILNLL---------TGYIFLLDKFGRIRWQG  242 (265)
Q Consensus       199 ~~l~~~~~y~~g~~~~iRe~Lgi~N~~---------vGYVyLVD~~grIRWag  242 (265)
                           ++...-+.+-++-++||+.-..         -=|++||| +|+|....
T Consensus       104 -----~I~~lsD~~g~f~k~lg~~~d~~~~g~G~Rs~R~a~iid-dg~I~~~~  150 (179)
T d1xiya1         104 -----KIKYISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVKMF  150 (179)
T ss_dssp             -----SSEEEECTTSHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEEEE
T ss_pred             -----eEEEeeCCchHHHHhhhcccccccCCCeeEEeeEEEEEE-CCEEEEEE
Confidence                 2222235567888999985322         24799999 89998864

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=87.56  E-value=0.24  Score=33.61  Aligned_cols=32  Identities=19%  Similarity=0.173  Sum_probs=18.5

Q ss_pred             HHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHH
Q 024610          215 FRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSS  253 (265)
Q Consensus       215 iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~  253 (265)
                      +-+..||.-  +|- ++++.+|++    .|..+.+++..
T Consensus        48 la~~~~V~~--~Pt-~~i~~~g~~----~G~~~~~~l~~   79 (85)
T d1fo5a_          48 KAMEYGIMA--VPT-IVINGDVEF----IGAPTKEALVE   79 (85)
T ss_dssp             TTTSTTTCC--SSE-EEETTEEEC----CSSSSSHHHHH
T ss_pred             ccccCCceE--eeE-EEEECCcEE----ECCCCHHHHHH
Confidence            334556654  664 456767764    36666666544

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.72  E-value=0.26  Score=37.98  Aligned_cols=38  Identities=13%  Similarity=0.063  Sum_probs=27.6

Q ss_pred             CCCceEEEEEeeeccchHHHhhhcchhHHh-------hccCCCeeEEEEecccc
Q 024610          128 AIPKVSLVCLTFRASSQAMVDSWSSPFFEA-------FSDSKNVHLYEVSFIDS  174 (265)
Q Consensus       128 l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~-------~~~~~~vqiv~In~~e~  174 (265)
                      +.|++.|+.++         ++||.||...       ...+|+..++-|+++++
T Consensus        52 ~~~~~~~l~~~---------~tWC~~C~~~~P~l~~l~~~~~~~~~~~i~~d~~   96 (166)
T d1z6na1          52 IERRYRLLVAG---------EMWCPDCQINLAALDFAQRLQPNIELAIISKGRA   96 (166)
T ss_dssp             CCSCEEEEEEC---------CTTCHHHHHHHHHHHHHHHHCTTEEEEEECHHHH
T ss_pred             hcCCeEEEEEE---------eCcCccHHHHHHHHHHHHHHCCCCcEEEEECccC
Confidence            35788888766         9999999732       24567888877877664

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=83.19  E-value=5.3  Score=27.44  Aligned_cols=37  Identities=19%  Similarity=0.167  Sum_probs=24.6

Q ss_pred             CChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHH
Q 024610          210 GDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSS  253 (265)
Q Consensus       210 g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~  253 (265)
                      +.+.++.+..||..  +|-+++   +|+.++  .|..+.+|+-.
T Consensus        55 ~~~~~l~~~~~I~~--vPt~~~---ng~~~~--~G~~~~~~l~~   91 (96)
T d1hyua4          55 GTFQNEITERNVMG--VPAVFV---NGKEFG--QGRMTLTEIVA   91 (96)
T ss_dssp             TTCHHHHHHTTCCS--SSEEEE---TTEEEE--ESCCCHHHHHH
T ss_pred             ccchHHHhhccccc--ccEEEE---CCEEEE--ecCCCHHHHHH
Confidence            33456667778876  777755   677774  57777776643

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.77  E-value=2.4  Score=30.78  Aligned_cols=39  Identities=15%  Similarity=0.230  Sum_probs=25.1

Q ss_pred             ccEEEEEeCCCcEEEcccC----------CCCHHHH-HHHHHHHHhhhcC
Q 024610          226 TGYIFLLDKFGRIRWQGFG----------MATPEEL-SSLLSCTSLLLEG  264 (265)
Q Consensus       226 vGYVyLVD~~grIRWagsG----------~at~~E~-e~L~k~~~~Ll~e  264 (265)
                      ++.++++|++|++.=.-.|          +.+.+++ +.|.+++..|-.|
T Consensus        83 ~Pt~~~~d~~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~d  132 (135)
T d1sena_          83 IPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERLTGD  132 (135)
T ss_dssp             SSEEEEECTTSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHHHHHGGG
T ss_pred             ceeEEEECCCCeEEEEecCCCCCcchhccCCCHHHHHHHHHHHHHHhhcc
Confidence            6899999999997644344          3444443 5566666665443

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=80.97  E-value=1.5  Score=31.90  Aligned_cols=43  Identities=14%  Similarity=0.135  Sum_probs=30.6

Q ss_pred             hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHHH
Q 024610          212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLSC  257 (265)
Q Consensus       212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k~  257 (265)
                      ..++-+.+||..  ++-++++ .+|+++..-.|..+.+|+..+.+.
T Consensus        74 ~~~l~~~~~V~~--~Pt~~~~-~~G~~v~~~~G~~~~~~l~~~i~~  116 (119)
T d2es7a1          74 SEAIGDRFNVRR--FPATLVF-TDGKLRGALSGIHPWAELLTLMRS  116 (119)
T ss_dssp             HHHHHHTTTCCS--SSEEEEE-SCC----CEESCCCHHHHHHHHHH
T ss_pred             CHHHHHhcCcCc--ceEEEEE-EcCeEEEEeeCCCCHHHHHHHHHH
Confidence            466888889986  8877777 599999999999999887666543