Citrus Sinensis ID: 024612

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-----
Protein Sequence
MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVFRLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKVKTVLYVHFRFVSFFLPFPKRSTTMVLLQQNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKNEQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLLPAPVKAKAP
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHcHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
MSTLDATRAELALVVLYLNKAEARDKICRAIQYgskflsdgqpgtaqnvdkSTSLARKVFRLFKFVNdlhalispvpqgtplplvllgksknaLLSTFLFLDQVVWLGRSGIYKVKTVLYVHFRfvsfflpfpkrsTTMVLLQQNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKNEQYQAKLKKSNERSLALVKSAMDIVVAVGLlqlapkkvtprvtgaFGFVTSLISCyqllpapvkakap
Flexible Loop (DISEMBL)
mstldatrAELALVVLYLNKAEARDKICRAIQYGskflsdgqpgtaqNVDKSTSLARKVFRLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKVKTVLYVHFRFVSfflpfpkrSTTMVLLQQNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKelkdsdkhknEQYQAKLKKSNERSLALVKSAMDIVVAVGLlqlapkkvtpRVTGAFGFVTSLIScyqllpapvkakap
Low Complexity Region (SEG)
MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVFRLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKVKTVLYVHFRFVSFFLPFPKRSTTMVLLQQNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTSMkklekelkdsdkhkNEQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLLPAPVKAKAP
Disordered region (IsUnstruct)
********AELALVVLYLNKAEARDKICRAIQYGSKFLS**************SLARKVFRLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKVKTVLYVHFRFVSFFLPFPKRSTTMVLLQQNKERAELLGRISLFCWMGSSVCSTLVELGELG***********************************LALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLLPA*******
Disordered Region (DISOPRED)
******T**ELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVFRLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKVKTVLYVHFRFVSFFLPFPKRSTTMVLLQQNKERAELLGRISLFCWMGSSVCSTL*******************************QAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLLPAPV*****
Disordered Region (DISEMBL)
MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDG**********STSLARKVFRLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKVKTVLYVHFRFVSFFLPFPKRSTTMVLLQQNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKNEQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLLPAPVKAKAP
Disordered Region (DISPRO)
**TLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVFRLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKVKTVLYVHFRFVSFFLPFPKRSTTMVLLQQNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKNEQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLLPAP******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVFRLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKVKTVLYVHFRFVSFFLPFPKRSTTMVLLQQNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLLPAPVKAKAP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	265	2.2.26 [Sep-21-2011]
Q9LQ73	235	Peroxisomal membrane prot	yes	no	0.879	0.991	0.756	1e-112
O80845	236	Peroxisomal membrane prot	no	no	0.883	0.991	0.757	1e-112
Q84JW1	231	Peroxisomal membrane prot	no	no	0.871	1.0	0.728	1e-106
Q10SM7	237	Peroxisomal membrane prot	no	no	0.883	0.987	0.700	1e-101
Q5VRJ8	233	Peroxisomal membrane prot	no	no	0.879	1.0	0.684	1e-101
Q54H86	254	Peroxisomal membrane prot	yes	no	0.781	0.814	0.236	4e-06
Q7XU74	222	Peroxisomal membrane prot	no	no	0.777	0.927	0.218	5e-06
Q01IH3	222	Peroxisomal membrane prot	N/A	no	0.777	0.927	0.218	5e-06
Q10MN2	242	Peroxisomal membrane prot	no	no	0.520	0.570	0.284	0.0001
A2XFQ8	242	Peroxisomal membrane prot	N/A	no	0.520	0.570	0.284	0.0001

>sp|Q9LQ73|PX11C_ARATH Peroxisomal membrane protein 11C OS=Arabidopsis thaliana GN=PEX11C PE=1 SV=1

 Score =  405 bits (1042), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 199/263 (75%), Positives = 223/263 (84%), Gaps = 30/263 (11%)

Query: 1   MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
           MSTL+ TRAEL LVV+YLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDK+TSLARKVF
Sbjct: 1   MSTLETTRAELGLVVVYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKNTSLARKVF 60

Query: 61  RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKVKTVLY 120
           RLFKFVNDLHALISPVP+GTPLPLVLLGKSKNALLSTFLFLDQ+VWLGR+GIYK      
Sbjct: 61  RLFKFVNDLHALISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRTGIYK------ 114

Query: 121 VHFRFVSFFLPFPKRSTTMVLLQQNKERAELLGRISLFCWMGSSVCSTLVELGELGRLST 180
                                   +KERAE+LGRISLFCWMGSSVC++LVE+GELGRLS 
Sbjct: 115 ------------------------DKERAEILGRISLFCWMGSSVCTSLVEVGELGRLSA 150

Query: 181 SMKKLEKELKDSDKHKNEQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVT 240
           S+KKLEKE+ + DKH+NEQY+AK++KSNERSLAL+K+ MD+VVA GLLQLAPKKVTPRVT
Sbjct: 151 SIKKLEKEIGNKDKHQNEQYRAKVEKSNERSLALIKAGMDVVVAFGLLQLAPKKVTPRVT 210

Query: 241 GAFGFVTSLISCYQLLPAPVKAK 263
           GAFGF +SLISCYQLLP+  K+K
Sbjct: 211 GAFGFASSLISCYQLLPSHPKSK 233

Involved in peroxisomal proliferation. Promotes peroxisomal duplication, aggregation or elongation without fission.
Arabidopsis thaliana (taxid: 3702)

>sp|O80845|PX11D_ARATH Peroxisomal membrane protein 11D OS=Arabidopsis thaliana GN=PEX11D PE=1 SV=2

 Score =  405 bits (1040), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 200/264 (75%), Positives = 221/264 (83%), Gaps = 30/264 (11%)

Query: 2   STLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVFR 61
           +TLD +RAELALVV+YLNKAEARDK+CRAIQYGSKFLS GQPGTAQNVDKSTSLARKVFR
Sbjct: 3   TTLDVSRAELALVVMYLNKAEARDKLCRAIQYGSKFLSGGQPGTAQNVDKSTSLARKVFR 62

Query: 62  LFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKVKTVLYV 121
           LFKFVNDLH LISPVP+GTPLPLVLLGKSKNALLSTFLFLDQ+VWLGRSGIYK       
Sbjct: 63  LFKFVNDLHGLISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYK------- 115

Query: 122 HFRFVSFFLPFPKRSTTMVLLQQNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTS 181
                                  NKERAELLGRISLFCWMGSSVC+TLVE+GE+GRLS+S
Sbjct: 116 -----------------------NKERAELLGRISLFCWMGSSVCTTLVEVGEMGRLSSS 152

Query: 182 MKKLEKELKDSDKHKNEQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVTG 241
           MKK+EK LK+ +K+++E Y+AKLKKSNERSLAL+KSAMDIVVA GLLQLAP K+TPRVTG
Sbjct: 153 MKKIEKGLKNGNKYQDEDYRAKLKKSNERSLALIKSAMDIVVAAGLLQLAPTKITPRVTG 212

Query: 242 AFGFVTSLISCYQLLPAPVKAKAP 265
           AFGF+TS+ISCYQLLP   K K P
Sbjct: 213 AFGFITSIISCYQLLPTRPKIKTP 236

Involved in peroxisomal proliferation. Promotes peroxisomal duplication, aggregation or elongation without fission.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84JW1|PX11E_ARATH Peroxisomal membrane protein 11E OS=Arabidopsis thaliana GN=PEX11E PE=1 SV=1

 Score =  385 bits (988), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 193/265 (72%), Positives = 215/265 (81%), Gaps = 34/265 (12%)

Query: 1   MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
           M+TLD TRAELAL+VLYLNKAEARDKICRAIQYGSKFLS GQPGTAQ VDK+TSLARKVF
Sbjct: 1   MTTLDLTRAELALIVLYLNKAEARDKICRAIQYGSKFLSGGQPGTAQTVDKNTSLARKVF 60

Query: 61  RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKVKTVLY 120
           RLFKFVND H LISPVP+GTPLPLVLLGKSKNALLSTFLFLDQ+VWLGRSGIYK      
Sbjct: 61  RLFKFVNDFHGLISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYK------ 114

Query: 121 VHFRFVSFFLPFPKRSTTMVLLQQNKERAELLGRISLFCWMGSSVCSTLVELGELGRLST 180
                                   NKER ELLGRISLFCW+GSSVC++ VE+GELGRLS+
Sbjct: 115 ------------------------NKERTELLGRISLFCWLGSSVCTSAVEIGELGRLSS 150

Query: 181 SMKKLEKELKDSDKHKNEQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVT 240
           SMKK+EKELK  D    E Y+AKL+KSN+R+LAL+KS+MDI+VA+GLLQLAPK ++PRVT
Sbjct: 151 SMKKMEKELKADD----ELYRAKLQKSNDRTLALIKSSMDIIVAIGLLQLAPKTISPRVT 206

Query: 241 GAFGFVTSLISCYQLLPAPVKAKAP 265
           GAFGF TSLISCYQLLP+  K K P
Sbjct: 207 GAFGFTTSLISCYQLLPSRPKLKTP 231

Involved in peroxisomal proliferation. Promotes peroxisomal duplication, aggregation or elongation without fission.

Arabidopsis thaliana (taxid: 3702)

>sp|Q10SM7|PX111_ORYSJ Peroxisomal membrane protein 11-1 OS=Oryza sativa subsp. japonica GN=PEX11-1 PE=2 SV=1

 Score =  369 bits (948), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/267 (70%), Positives = 216/267 (80%), Gaps = 33/267 (12%)

Query: 1   MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
           MSTLDATRAEL LVVLYLNKAEARDKICRAIQYGSKF+S+GQPGTAQ+VD+ST+LARKVF
Sbjct: 1   MSTLDATRAELGLVVLYLNKAEARDKICRAIQYGSKFISNGQPGTAQDVDRSTTLARKVF 60

Query: 61  RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKVKTVLY 120
           RL K+VNDLH LISP  +GTPL LVLLGKSKNALLSTFLFLDQ VWLGR+GIYK      
Sbjct: 61  RLLKWVNDLHGLISPPAKGTPLTLVLLGKSKNALLSTFLFLDQFVWLGRTGIYK------ 114

Query: 121 VHFRFVSFFLPFPKRSTTMVLLQQNKERAELLGRISLFCWMGSSVCSTLVELGELGRLST 180
                                   NKER + + RISL+CWM SSVC+ LVELGEL RLS 
Sbjct: 115 ------------------------NKERTDRIVRISLYCWMASSVCAGLVELGELKRLSK 150

Query: 181 SMKKLEKELKDSDKHKNEQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVT 240
           SM+KL +EL+D+DK++N+QY++K+K+S+ER LALVK+AMD+VVAVGLLQL+PKK+TPRVT
Sbjct: 151 SMRKLARELRDTDKYENDQYKSKMKQSDERLLALVKAAMDVVVAVGLLQLSPKKITPRVT 210

Query: 241 GAFGFVTSLISCYQLLP--AP-VKAKA 264
           GAFGFVTSLISCYQ LP  AP +K KA
Sbjct: 211 GAFGFVTSLISCYQQLPSRAPAIKVKA 237

Involved in peroxisomal proliferation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5VRJ8|PX115_ORYSJ Peroxisomal membrane protein 11-5 OS=Oryza sativa subsp. japonica GN=PEX11-5 PE=2 SV=1

 Score =  368 bits (945), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 180/263 (68%), Positives = 212/263 (80%), Gaps = 30/263 (11%)

Query: 1   MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
           MS+L++ RA+LAL++LYLNKAEARDKICRAIQYGSKF+S+GQPG AQNVDKSTSLARKVF
Sbjct: 1   MSSLESARADLALLILYLNKAEARDKICRAIQYGSKFVSNGQPGPAQNVDKSTSLARKVF 60

Query: 61  RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKVKTVLY 120
           RLFKFVNDLHALISP  +GTPLPL+LLGKSKNALLSTFLFLDQ+VW GR+GIYK      
Sbjct: 61  RLFKFVNDLHALISPPAKGTPLPLILLGKSKNALLSTFLFLDQIVWAGRTGIYK------ 114

Query: 121 VHFRFVSFFLPFPKRSTTMVLLQQNKERAELLGRISLFCWMGSSVCSTLVELGELGRLST 180
                                   NKERAE L +I+ +C++GS+ C++++E+ EL RLS 
Sbjct: 115 ------------------------NKERAEFLSKIAFYCFLGSNTCTSIIEVAELQRLSK 150

Query: 181 SMKKLEKELKDSDKHKNEQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVT 240
           SMKKLEKELK  +  KNEQYQ KL+K NER LAL+KS++DIVVA+GLLQLAPKKVTPRVT
Sbjct: 151 SMKKLEKELKHQELLKNEQYQMKLQKCNERRLALIKSSLDIVVAIGLLQLAPKKVTPRVT 210

Query: 241 GAFGFVTSLISCYQLLPAPVKAK 263
           GAFGF +SLI+CYQLLPAP K+K
Sbjct: 211 GAFGFASSLIACYQLLPAPAKSK 233

Involved in peroxisomal proliferation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q54H86|PEX11_DICDI Peroxisomal membrane protein 11 homolog OS=Dictyostelium discoideum GN=pex11 PE=3 SV=1

 Score = 52.0 bits (123), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 113/266 (42%), Gaps = 59/266 (22%)

Query: 18  LNKAEARDKICRAIQYGSKFL-------SDGQPGTAQNVDKSTSLARKVFRLFKFVNDLH 70
           L +   +DKI + +QYG+K L       S       + ++ ++  ARKV+RL   + +  
Sbjct: 21  LAQTSGKDKIAKILQYGAKLLGYIFLKRSKHWVDVMKKLETTSGSARKVWRLGNTLAEQQ 80

Query: 71  ALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKVKTVLYVHFRFVSFFL 130
            +++            L K KN     F FL+ +  + +SG       +Y ++ F    L
Sbjct: 81  KILA------------LFKVKNP----FAFLNILALIRQSG-------MYFYWVFDHLIL 117

Query: 131 PFPKRSTTMVLLQQNKERAELLGRISLFCWMGSSVCSTLVELGELG---------RLSTS 181
                 T + L + +  +   LG  S   W    +CS +++L  L          RL+ +
Sbjct: 118 -----GTNIGLCKFDTVK---LGWYSSVSWFFGLLCSIIIDLNTLAIMLKKEKSLRLTIT 169

Query: 182 MKKLEKELKDSDKH------KN----EQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLA 231
             K+     + D H      +N    +Q+   +KK NE  L   K+  D+++A  LL++ 
Sbjct: 170 QNKINANNNNIDTHTITSEVENKAIIDQFNEVIKKKNEIYLNCAKNGSDLIIASTLLKIY 229

Query: 232 PKKVTPRVTGAFGFVTSLISCYQLLP 257
           P   +    G  G +++LI  YQ+ P
Sbjct: 230 P--FSQGTIGISGIISALIGAYQMWP 253

Involved in peroxisomal proliferation. Could participate in peroxisomal elongation or fission. May be involved in parceling of peroxisomes into regular quanta.

Dictyostelium discoideum (taxid: 44689)

>sp|Q7XU74|PX114_ORYSJ Peroxisomal membrane protein 11-4 OS=Oryza sativa subsp. japonica GN=PEX11-4 PE=2 SV=2

 Score = 52.0 bits (123), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 93/252 (36%), Gaps = 46/252 (18%)

Query: 14  VVLYLNKAEARDKICRAIQYGSKFL-------SDGQPGTAQNVDKSTSLARKVFRLFKFV 66
           +V++L K +  DK+ +  QY SK         S G  G A+N + S  L+RK FR  +F+
Sbjct: 10  LVVFLAKRDGIDKLVKTFQYVSKLAHWAAESSSPGLAGRAKNWETSAGLSRKAFRTGRFL 69

Query: 67  NDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKVKTVLYVHFRFV 126
             L+ L     +  P     L    NA    + F D   WL R G+              
Sbjct: 70  TGLNGL-----RRAPGEFGALAVLANAGEMVYFFFDHFTWLSRVGVLD------------ 112

Query: 127 SFFLPFPKRSTTMVLLQQNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLE 186
                                 A L  R+S     G SV        +L  +   +++  
Sbjct: 113 ----------------------AWLARRMSFISAFGESVGYVFFIAMDLIMIRRGLRQER 150

Query: 187 KELKDSDKHKNEQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFV 246
           K L++  K K+++ +        R +A   +  D+V+ +  ++  P        G  G V
Sbjct: 151 KLLREGGKDKDKEVKKIRMDRVMRLMATAANVADLVIGIADIEPNPFCNHAVTLGISGLV 210

Query: 247 TSLISCYQLLPA 258
           ++    Y+  P+
Sbjct: 211 SAWAGWYRNWPS 222

Involved in peroxisomal proliferation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q01IH3|PX114_ORYSI Peroxisomal membrane protein 11-4 OS=Oryza sativa subsp. indica GN=PEX11-4 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 93/252 (36%), Gaps = 46/252 (18%)

Query: 14  VVLYLNKAEARDKICRAIQYGSKFL-------SDGQPGTAQNVDKSTSLARKVFRLFKFV 66
           +V++L K +  DK+ +  QY SK         S G  G A+N + S  L+RK FR  +F+
Sbjct: 10  LVVFLAKRDGIDKLVKTFQYVSKLAHWAAESSSPGLAGRAKNWETSAGLSRKAFRTGRFL 69

Query: 67  NDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKVKTVLYVHFRFV 126
             L+ L     +  P     L    NA    + F D   WL R G+              
Sbjct: 70  TGLNGL-----RRAPGEFGALAVLANAGEMVYFFFDHFTWLSRVGVLD------------ 112

Query: 127 SFFLPFPKRSTTMVLLQQNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLE 186
                                 A L  R+S     G SV        +L  +   +++  
Sbjct: 113 ----------------------AWLARRMSFISAFGESVGYVFFIAMDLIMIRRGLRQER 150

Query: 187 KELKDSDKHKNEQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFV 246
           K L++  K K+++ +        R +A   +  D+V+ +  ++  P        G  G V
Sbjct: 151 KLLREGGKDKDKEVKKIRMDRVMRLMATAANVADLVIGIADIEPNPFCNHAVTLGISGLV 210

Query: 247 TSLISCYQLLPA 258
           ++    Y+  P+
Sbjct: 211 SAWAGWYRNWPS 222

Involved in peroxisomal proliferation.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q10MN2|PX113_ORYSJ Peroxisomal membrane protein 11-3 OS=Oryza sativa subsp. japonica GN=PEX11-3 PE=2 SV=1

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 45/183 (24%)

Query: 47  QNVDKSTSLARKVFRLFKFVNDLHAL-ISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVV 105
           ++ + S  L+RK FRL KFV +++AL   P P   P  + LL      +   + FL+Q V
Sbjct: 68  KSFESSVGLSRKAFRLGKFVQNVNALRAHPHP---PPAVALLAYGGEGV---YYFLEQFV 121

Query: 106 WLGRSGIYKVKTVLYVHFRFVSFFLPFPKRSTTMVLLQQNKERAELLGRISLFCWMGSSV 165
           WL ++G+      L  H          P+       LQ+    AELLG +          
Sbjct: 122 WLAKAGL------LPAHL--------LPR-------LQRLSAWAELLGYVG--------- 151

Query: 166 CSTLVELGELGRLSTSMKKLEKE--LKDSDKHKNEQYQAKLKKSNERSLALVKSAMDIVV 223
            S  ++L E+G+L +S+K   KE   ++SD  +  + +  LK+     +++V+   D V+
Sbjct: 152 -SITIKLEEIGKLESSVKMRLKEGCREESDVVRTLRVKLLLKR-----MSVVQDVADAVM 205

Query: 224 AVG 226
           A+G
Sbjct: 206 ALG 208

Involved in peroxisomal proliferation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2XFQ8|PX113_ORYSI Peroxisomal membrane protein 11-3 OS=Oryza sativa subsp. indica GN=PEX11-3 PE=2 SV=1

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 45/183 (24%)

Query: 47  QNVDKSTSLARKVFRLFKFVNDLHAL-ISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVV 105
           ++ + S  L+RK FRL KFV +++AL   P P   P  + LL      +   + FL+Q V
Sbjct: 68  KSFESSVGLSRKAFRLGKFVQNVNALRAHPHP---PPAVALLAYGGEGV---YYFLEQFV 121

Query: 106 WLGRSGIYKVKTVLYVHFRFVSFFLPFPKRSTTMVLLQQNKERAELLGRISLFCWMGSSV 165
           WL ++G+      L  H          P+       LQ+    AELLG +          
Sbjct: 122 WLAKAGL------LPAHL--------LPR-------LQRLSAWAELLGYVG--------- 151

Query: 166 CSTLVELGELGRLSTSMKKLEKE--LKDSDKHKNEQYQAKLKKSNERSLALVKSAMDIVV 223
            S  ++L E+G+L +S+K   KE   ++SD  +  + +  LK+     +++V+   D V+
Sbjct: 152 -SITIKLEEIGKLESSVKMRLKEGCREESDVVRTLRVKLLLKR-----MSVVQDVADAVM 205

Query: 224 AVG 226
           A+G
Sbjct: 206 ALG 208

Involved in peroxisomal proliferation.

Oryza sativa subsp. indica (taxid: 39946)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
224063967	235	predicted protein [Populus trichocarpa]	0.879	0.991	0.813	1e-117
224130140	235	predicted protein [Populus trichocarpa]	0.879	0.991	0.809	1e-116
255541462	235	peroxisomal biogenesis factor, putative	0.879	0.991	0.806	1e-116
225453744	235	PREDICTED: peroxisomal membrane protein	0.879	0.991	0.798	1e-115
297842942	235	peroxisomal biogenesis factor 11 family	0.879	0.991	0.771	1e-112
18378887	235	peroxisomal membrane protein 11C [Arabid	0.879	0.991	0.756	1e-111
297824623	236	peroxisomal biogenesis factor 11 family	0.883	0.991	0.757	1e-110
18406877	236	peroxisomal membrane protein 11D [Arabid	0.883	0.991	0.757	1e-110
351723775	235	peroxisomal biogenesis factor 11 family	0.879	0.991	0.752	1e-110
388517419	235	unknown [Lotus japonicus]	0.879	0.991	0.760	1e-110

>gi|224063967|ref|XP_002301325.1| predicted protein [Populus trichocarpa] gi|118484040|gb|ABK93906.1| unknown [Populus trichocarpa] gi|222843051|gb|EEE80598.1| predicted protein [Populus trichocarpa]

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 214/263 (81%), Positives = 224/263 (85%), Gaps = 30/263 (11%)

Query: 1   MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
           MSTLDATRAELAL+VLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF
Sbjct: 1   MSTLDATRAELALIVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60

Query: 61  RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKVKTVLY 120
           RLFKFVNDLH LISPV QGTPLPLVLLGKSKNALLSTFLFLDQ+VWLGRSGIYK      
Sbjct: 61  RLFKFVNDLHGLISPVSQGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYK------ 114

Query: 121 VHFRFVSFFLPFPKRSTTMVLLQQNKERAELLGRISLFCWMGSSVCSTLVELGELGRLST 180
                                   NKER +L+GRISLFCWMGSS+C+TLVE+GELGRLS 
Sbjct: 115 ------------------------NKERVDLIGRISLFCWMGSSICTTLVEVGELGRLSV 150

Query: 181 SMKKLEKELKDSDKHKNEQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVT 240
           SMKKLEKELKD +KH NEQY+AKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVT
Sbjct: 151 SMKKLEKELKDGEKHHNEQYRAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVT 210

Query: 241 GAFGFVTSLISCYQLLPAPVKAK 263
           GAFG VTSLISCYQLLP+P K K
Sbjct: 211 GAFGVVTSLISCYQLLPSPQKPK 233

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130140|ref|XP_002320762.1| predicted protein [Populus trichocarpa] gi|118489542|gb|ABK96573.1| unknown [Populus trichocarpa x Populus deltoides] gi|222861535|gb|EEE99077.1| predicted protein [Populus trichocarpa]

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/263 (80%), Positives = 225/263 (85%), Gaps = 30/263 (11%)

Query: 1   MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
           MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQ GTAQNVDKSTSLARKVF
Sbjct: 1   MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQAGTAQNVDKSTSLARKVF 60

Query: 61  RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKVKTVLY 120
           RLFKFVNDLH LISPVPQGTPLPLVLLGKSKNALLSTFLFLDQ+VWLGRSGIYK      
Sbjct: 61  RLFKFVNDLHGLISPVPQGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYK------ 114

Query: 121 VHFRFVSFFLPFPKRSTTMVLLQQNKERAELLGRISLFCWMGSSVCSTLVELGELGRLST 180
                                   NKER EL+GRISLFCWMGSS+C+TLVE+GELGRLS 
Sbjct: 115 ------------------------NKERVELIGRISLFCWMGSSICTTLVEVGELGRLSA 150

Query: 181 SMKKLEKELKDSDKHKNEQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVT 240
           SMKKLEKELK+ +K+ NEQY+AKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVT
Sbjct: 151 SMKKLEKELKEGEKNHNEQYRAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVT 210

Query: 241 GAFGFVTSLISCYQLLPAPVKAK 263
           G FGFV+SLISCYQLLP+P K+K
Sbjct: 211 GGFGFVSSLISCYQLLPSPQKSK 233

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541462|ref|XP_002511795.1| peroxisomal biogenesis factor, putative [Ricinus communis] gi|223548975|gb|EEF50464.1| peroxisomal biogenesis factor, putative [Ricinus communis]

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/263 (80%), Positives = 227/263 (86%), Gaps = 30/263 (11%)

Query: 1   MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
           MSTLDATRAELAL+VLYLNKAEARDKICRAIQYGSKFLS+GQPGTAQNVDKSTSLARKVF
Sbjct: 1   MSTLDATRAELALLVLYLNKAEARDKICRAIQYGSKFLSNGQPGTAQNVDKSTSLARKVF 60

Query: 61  RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKVKTVLY 120
           RL KFVNDLHALISPV QGTPLPLVLLGKSKNALLSTFLFLDQ+VWLGRSGIYK      
Sbjct: 61  RLLKFVNDLHALISPVTQGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYK------ 114

Query: 121 VHFRFVSFFLPFPKRSTTMVLLQQNKERAELLGRISLFCWMGSSVCSTLVELGELGRLST 180
                                   NKERA+L+GRISL+CWMGSSVC+TLVE+GELGRLS 
Sbjct: 115 ------------------------NKERADLIGRISLYCWMGSSVCTTLVEIGELGRLSA 150

Query: 181 SMKKLEKELKDSDKHKNEQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVT 240
           S+KKLEKELK+SDKH+NEQY+AKL+KSNERSLALVK+AMDIVVAVGLLQLAPKKV PRVT
Sbjct: 151 SLKKLEKELKNSDKHQNEQYRAKLQKSNERSLALVKAAMDIVVAVGLLQLAPKKVNPRVT 210

Query: 241 GAFGFVTSLISCYQLLPAPVKAK 263
           GAFGFVTSLISCYQLLP+  KAK
Sbjct: 211 GAFGFVTSLISCYQLLPSQPKAK 233

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453744|ref|XP_002273596.1| PREDICTED: peroxisomal membrane protein 11C isoform 2 [Vitis vinifera] gi|225453746|ref|XP_002273544.1| PREDICTED: peroxisomal membrane protein 11C isoform 1 [Vitis vinifera] gi|296089071|emb|CBI38774.3| unnamed protein product [Vitis vinifera]

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 210/263 (79%), Positives = 223/263 (84%), Gaps = 30/263 (11%)

Query: 1   MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
           MSTLDATRAEL LV+LYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF
Sbjct: 1   MSTLDATRAELGLVILYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60

Query: 61  RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKVKTVLY 120
           RLFKFVNDLHALISP PQGTPLPLVLLGKSKNALLSTFLFLDQ+VWLGRSGIYK      
Sbjct: 61  RLFKFVNDLHALISPAPQGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYK------ 114

Query: 121 VHFRFVSFFLPFPKRSTTMVLLQQNKERAELLGRISLFCWMGSSVCSTLVELGELGRLST 180
                                   NKERAE +GRISLFCWMGSS+C+TLVELGELGRLS 
Sbjct: 115 ------------------------NKERAEQIGRISLFCWMGSSICATLVELGELGRLSA 150

Query: 181 SMKKLEKELKDSDKHKNEQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVT 240
           SMKKLEKELK SDK++NEQY++KLKKSN RSLALVK+ MD VVAVGLLQLAPKKVTPRVT
Sbjct: 151 SMKKLEKELKGSDKYQNEQYRSKLKKSNARSLALVKAVMDTVVAVGLLQLAPKKVTPRVT 210

Query: 241 GAFGFVTSLISCYQLLPAPVKAK 263
           G FGFV+SLISCYQLLP+P K+K
Sbjct: 211 GGFGFVSSLISCYQLLPSPPKSK 233

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842942|ref|XP_002889352.1| peroxisomal biogenesis factor 11 family protein [Arabidopsis lyrata subsp. lyrata] gi|297335194|gb|EFH65611.1| peroxisomal biogenesis factor 11 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/263 (77%), Positives = 223/263 (84%), Gaps = 30/263 (11%)

Query: 1   MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
           MSTL+ TRAEL LVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF
Sbjct: 1   MSTLETTRAELGLVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60

Query: 61  RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKVKTVLY 120
           RLFKFVNDLHALISPVP+GTPLPLVLLGKSKNALLSTFLFLDQ+VWLGR+GIYK      
Sbjct: 61  RLFKFVNDLHALISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRTGIYK------ 114

Query: 121 VHFRFVSFFLPFPKRSTTMVLLQQNKERAELLGRISLFCWMGSSVCSTLVELGELGRLST 180
                                   +KERAELLGRISLFCWMGSSVC++LVE+GELGRLS 
Sbjct: 115 ------------------------DKERAELLGRISLFCWMGSSVCTSLVEVGELGRLSA 150

Query: 181 SMKKLEKELKDSDKHKNEQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVT 240
           S+KKLEKE+ + DKH+NEQY+AKL+KSNERSLAL+K+ MD+VVA GLLQLAPKKVTPRVT
Sbjct: 151 SIKKLEKEIGNKDKHQNEQYRAKLEKSNERSLALIKAGMDVVVAFGLLQLAPKKVTPRVT 210

Query: 241 GAFGFVTSLISCYQLLPAPVKAK 263
           GAFGF +SLISCYQLLP+  K+K
Sbjct: 211 GAFGFASSLISCYQLLPSHPKSK 233

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18378887|ref|NP_563636.1| peroxisomal membrane protein 11C [Arabidopsis thaliana] gi|75180079|sp|Q9LQ73.1|PX11C_ARATH RecName: Full=Peroxisomal membrane protein 11C; AltName: Full=Peroxin-11C; Short=AtPEX11c gi|8671852|gb|AAF78415.1|AC009273_21 Contains similarity to an unknown protein F4I18.28 gi|7486466 from Arabidopsis thaliana BAC F4I18 gb|AC004665. ESTs gb|F14309, gb|AI998750, gb|995247, gb|T14224 and gb|AI995247 come from this gene [Arabidopsis thaliana] gi|12083290|gb|AAG48804.1|AF332441_1 unknown protein [Arabidopsis thaliana] gi|17381255|gb|AAL36046.1| At1g01820/T1N6_18 [Arabidopsis thaliana] gi|20453367|gb|AAM19922.1| At1g01820/T1N6_18 [Arabidopsis thaliana] gi|21555588|gb|AAM63892.1| unknown [Arabidopsis thaliana] gi|57157092|dbj|BAD83578.1| unnamed protein product [Arabidopsis thaliana] gi|332189218|gb|AEE27339.1| peroxisomal membrane protein 11C [Arabidopsis thaliana]

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 199/263 (75%), Positives = 223/263 (84%), Gaps = 30/263 (11%)

Query: 1   MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
           MSTL+ TRAEL LVV+YLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDK+TSLARKVF
Sbjct: 1   MSTLETTRAELGLVVVYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKNTSLARKVF 60

Query: 61  RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKVKTVLY 120
           RLFKFVNDLHALISPVP+GTPLPLVLLGKSKNALLSTFLFLDQ+VWLGR+GIYK      
Sbjct: 61  RLFKFVNDLHALISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRTGIYK------ 114

Query: 121 VHFRFVSFFLPFPKRSTTMVLLQQNKERAELLGRISLFCWMGSSVCSTLVELGELGRLST 180
                                   +KERAE+LGRISLFCWMGSSVC++LVE+GELGRLS 
Sbjct: 115 ------------------------DKERAEILGRISLFCWMGSSVCTSLVEVGELGRLSA 150

Query: 181 SMKKLEKELKDSDKHKNEQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVT 240
           S+KKLEKE+ + DKH+NEQY+AK++KSNERSLAL+K+ MD+VVA GLLQLAPKKVTPRVT
Sbjct: 151 SIKKLEKEIGNKDKHQNEQYRAKVEKSNERSLALIKAGMDVVVAFGLLQLAPKKVTPRVT 210

Query: 241 GAFGFVTSLISCYQLLPAPVKAK 263
           GAFGF +SLISCYQLLP+  K+K
Sbjct: 211 GAFGFASSLISCYQLLPSHPKSK 233

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824623|ref|XP_002880194.1| peroxisomal biogenesis factor 11 family protein [Arabidopsis lyrata subsp. lyrata] gi|297326033|gb|EFH56453.1| peroxisomal biogenesis factor 11 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/264 (75%), Positives = 222/264 (84%), Gaps = 30/264 (11%)

Query: 2   STLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVFR 61
           +TLD +RAELALVV+YLNKAEARDK+CRAIQYGSKFLS GQPGTAQNVDKSTSLARKVFR
Sbjct: 3   TTLDVSRAELALVVMYLNKAEARDKLCRAIQYGSKFLSGGQPGTAQNVDKSTSLARKVFR 62

Query: 62  LFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKVKTVLYV 121
           LFKFVNDLH LISPVP+GTPLPLVLLGKSKNALLSTFLFLDQ+VWLGRSGIYK       
Sbjct: 63  LFKFVNDLHGLISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYK------- 115

Query: 122 HFRFVSFFLPFPKRSTTMVLLQQNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTS 181
                                  NKERAELLGRISLFCWMGSSVC+TLVE+GE+GRLS+S
Sbjct: 116 -----------------------NKERAELLGRISLFCWMGSSVCTTLVEVGEIGRLSSS 152

Query: 182 MKKLEKELKDSDKHKNEQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVTG 241
           MKK+EK LK  +K+++E+Y+AKLK+SNERSLAL+KSAMDIVVA GLLQLAPKK+TPRVTG
Sbjct: 153 MKKIEKGLKHGNKYQDEEYRAKLKQSNERSLALIKSAMDIVVAAGLLQLAPKKITPRVTG 212

Query: 242 AFGFVTSLISCYQLLPAPVKAKAP 265
           AFGF+TS+ISCYQLLP   K K P
Sbjct: 213 AFGFITSIISCYQLLPTRPKIKTP 236

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18406877|ref|NP_566055.1| peroxisomal membrane protein 11D [Arabidopsis thaliana] gi|30690116|ref|NP_850441.1| peroxisomal membrane protein 11D [Arabidopsis thaliana] gi|79324919|ref|NP_001031544.1| peroxisomal membrane protein 11D [Arabidopsis thaliana] gi|75099949|sp|O80845.2|PX11D_ARATH RecName: Full=Peroxisomal membrane protein 11D; AltName: Full=Peroxin-11D; Short=AtPEX11d gi|15450880|gb|AAK96711.1| Unknown protein [Arabidopsis thaliana] gi|20197204|gb|AAC28551.2| expressed protein [Arabidopsis thaliana] gi|21537163|gb|AAM61504.1| unknown [Arabidopsis thaliana] gi|330255500|gb|AEC10594.1| peroxisomal membrane protein 11D [Arabidopsis thaliana] gi|330255501|gb|AEC10595.1| peroxisomal membrane protein 11D [Arabidopsis thaliana] gi|330255502|gb|AEC10596.1| peroxisomal membrane protein 11D [Arabidopsis thaliana]

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/264 (75%), Positives = 221/264 (83%), Gaps = 30/264 (11%)

Query: 2   STLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVFR 61
           +TLD +RAELALVV+YLNKAEARDK+CRAIQYGSKFLS GQPGTAQNVDKSTSLARKVFR
Sbjct: 3   TTLDVSRAELALVVMYLNKAEARDKLCRAIQYGSKFLSGGQPGTAQNVDKSTSLARKVFR 62

Query: 62  LFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKVKTVLYV 121
           LFKFVNDLH LISPVP+GTPLPLVLLGKSKNALLSTFLFLDQ+VWLGRSGIYK       
Sbjct: 63  LFKFVNDLHGLISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYK------- 115

Query: 122 HFRFVSFFLPFPKRSTTMVLLQQNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTS 181
                                  NKERAELLGRISLFCWMGSSVC+TLVE+GE+GRLS+S
Sbjct: 116 -----------------------NKERAELLGRISLFCWMGSSVCTTLVEVGEMGRLSSS 152

Query: 182 MKKLEKELKDSDKHKNEQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVTG 241
           MKK+EK LK+ +K+++E Y+AKLKKSNERSLAL+KSAMDIVVA GLLQLAP K+TPRVTG
Sbjct: 153 MKKIEKGLKNGNKYQDEDYRAKLKKSNERSLALIKSAMDIVVAAGLLQLAPTKITPRVTG 212

Query: 242 AFGFVTSLISCYQLLPAPVKAKAP 265
           AFGF+TS+ISCYQLLP   K K P
Sbjct: 213 AFGFITSIISCYQLLPTRPKIKTP 236

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723775|ref|NP_001235755.1| peroxisomal biogenesis factor 11 family protein [Glycine max] gi|218117595|dbj|BAH03205.1| peroxisomal biogenesis factor 11 family protein [Glycine max] gi|255632590|gb|ACU16645.1| unknown [Glycine max]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 198/263 (75%), Positives = 221/263 (84%), Gaps = 30/263 (11%)

Query: 1   MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
           MSTLDATRAEL L+VLYL KAEARDKICRAIQYGSKFLS+G+PGTAQNVDK+TSLARKVF
Sbjct: 1   MSTLDATRAELGLLVLYLGKAEARDKICRAIQYGSKFLSNGEPGTAQNVDKTTSLARKVF 60

Query: 61  RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKVKTVLY 120
           RLFKFVNDLHALISP PQGTPLPL+LLGKSKNALLSTFLFLDQ VWLGR+GIY       
Sbjct: 61  RLFKFVNDLHALISPTPQGTPLPLILLGKSKNALLSTFLFLDQFVWLGRTGIY------- 113

Query: 121 VHFRFVSFFLPFPKRSTTMVLLQQNKERAELLGRISLFCWMGSSVCSTLVELGELGRLST 180
                                  QNKER EL+GRISL+CW+GSSVC+TLVELGELGRLS+
Sbjct: 114 -----------------------QNKERTELIGRISLYCWLGSSVCTTLVELGELGRLSS 150

Query: 181 SMKKLEKELKDSDKHKNEQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVT 240
           SMKKLEK+LK+ +K+ NEQY+AKL KSNER+L+L+K+ +D VVAVGLLQLAPK VTPRVT
Sbjct: 151 SMKKLEKDLKNKNKYDNEQYRAKLNKSNERTLSLIKAGIDTVVAVGLLQLAPKTVTPRVT 210

Query: 241 GAFGFVTSLISCYQLLPAPVKAK 263
           GAFGFV+SLISCYQLLPAP K+K
Sbjct: 211 GAFGFVSSLISCYQLLPAPAKSK 233

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517419|gb|AFK46771.1| unknown [Lotus japonicus]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/263 (76%), Positives = 222/263 (84%), Gaps = 30/263 (11%)

Query: 1   MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
           MS LD TRAEL L+VLYLNKAEARDKICRAIQYGSKFLS+G+PGTAQ+VDKSTSLARKVF
Sbjct: 1   MSALDTTRAELGLLVLYLNKAEARDKICRAIQYGSKFLSNGEPGTAQDVDKSTSLARKVF 60

Query: 61  RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKVKTVLY 120
           RLFKFVNDLH LI+P PQGTPLPL+LLGKSKNALLSTFLFLDQ VWLGR+GI        
Sbjct: 61  RLFKFVNDLHGLITPTPQGTPLPLILLGKSKNALLSTFLFLDQFVWLGRTGII------- 113

Query: 121 VHFRFVSFFLPFPKRSTTMVLLQQNKERAELLGRISLFCWMGSSVCSTLVELGELGRLST 180
                                  +NKER ELLG ISLFCW+GSS C+TLVELGELGRLST
Sbjct: 114 -----------------------ENKERTELLGPISLFCWLGSSACTTLVELGELGRLST 150

Query: 181 SMKKLEKELKDSDKHKNEQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVT 240
           SMKKLEKELK+++K+ NEQY+AKL+KSNER+LALVK+++DIVVAVGLLQLAPKKVTPRVT
Sbjct: 151 SMKKLEKELKNTNKYDNEQYRAKLQKSNERTLALVKASIDIVVAVGLLQLAPKKVTPRVT 210

Query: 241 GAFGFVTSLISCYQLLPAPVKAK 263
           GAFGFV+SLISCYQLLPAPVK+K
Sbjct: 211 GAFGFVSSLISCYQLLPAPVKSK 233

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
TAIR|locus:2050694	236	PEX11D "AT2G45740" [Arabidopsi	0.433	0.487	0.913	2.3e-97
TAIR|locus:2198150	235	PEX11C "AT1G01820" [Arabidopsi	0.437	0.493	0.922	4.2e-96
TAIR|locus:2101012	231	PEX11E "peroxin 11E" [Arabidop	0.437	0.502	0.905	6.2e-93
DICTYBASE|DDB_G0289623	254	pex11 "peroxisomal biogenesis	0.218	0.228	0.316	8.4e-06
FB|FBgn0034058	241	Pex11 "Peroxin 11" [Drosophila	0.362	0.398	0.330	3e-05
TAIR|locus:2202430	248	PEX11A "AT1G47750" [Arabidopsi	0.366	0.391	0.302	0.00037

TAIR|locus:2050694 PEX11D "AT2G45740" [Arabidopsis thaliana (taxid:3702)]

 Score = 537 (194.1 bits), Expect = 2.3e-97, Sum P(2) = 2.3e-97
 Identities = 105/115 (91%), Positives = 111/115 (96%)

Query:     2 STLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVFR 61
             +TLD +RAELALVV+YLNKAEARDK+CRAIQYGSKFLS GQPGTAQNVDKSTSLARKVFR
Sbjct:     3 TTLDVSRAELALVVMYLNKAEARDKLCRAIQYGSKFLSGGQPGTAQNVDKSTSLARKVFR 62

Query:    62 LFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKVK 116
             LFKFVNDLH LISPVP+GTPLPLVLLGKSKNALLSTFLFLDQ+VWLGRSGIYK K
Sbjct:    63 LFKFVNDLHGLISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNK 117

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005778 "peroxisomal membrane" evidence=ISS

GO:0005779 "integral to peroxisomal membrane" evidence=IEA;IDA

GO:0016559 "peroxisome fission" evidence=IEA;ISS;IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0007031 "peroxisome organization" evidence=IMP

GO:0005777 "peroxisome" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IDA

TAIR|locus:2198150 PEX11C "AT1G01820" [Arabidopsis thaliana (taxid:3702)]

 Score = 547 (197.6 bits), Expect = 4.2e-96, Sum P(2) = 4.2e-96
 Identities = 107/116 (92%), Positives = 113/116 (97%)

Query:     1 MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
             MSTL+ TRAEL LVV+YLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDK+TSLARKVF
Sbjct:     1 MSTLETTRAELGLVVVYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKNTSLARKVF 60

Query:    61 RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKVK 116
             RLFKFVNDLHALISPVP+GTPLPLVLLGKSKNALLSTFLFLDQ+VWLGR+GIYK K
Sbjct:    61 RLFKFVNDLHALISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRTGIYKDK 116

GO:0003674 "molecular_function" evidence=ND

GO:0005778 "peroxisomal membrane" evidence=ISS

GO:0005779 "integral to peroxisomal membrane" evidence=IEA;IDA

GO:0016559 "peroxisome fission" evidence=IEA;ISS;IMP

GO:0007031 "peroxisome organization" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005777 "peroxisome" evidence=IDA

GO:0042802 "identical protein binding" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2101012 PEX11E "peroxin 11E" [Arabidopsis thaliana (taxid:3702)]

 Score = 535 (193.4 bits), Expect = 6.2e-93, Sum P(2) = 6.2e-93
 Identities = 105/116 (90%), Positives = 110/116 (94%)

Query:     1 MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
             M+TLD TRAELAL+VLYLNKAEARDKICRAIQYGSKFLS GQPGTAQ VDK+TSLARKVF
Sbjct:     1 MTTLDLTRAELALIVLYLNKAEARDKICRAIQYGSKFLSGGQPGTAQTVDKNTSLARKVF 60

Query:    61 RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKVK 116
             RLFKFVND H LISPVP+GTPLPLVLLGKSKNALLSTFLFLDQ+VWLGRSGIYK K
Sbjct:    61 RLFKFVNDFHGLISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNK 116

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005778 "peroxisomal membrane" evidence=ISS

GO:0005779 "integral to peroxisomal membrane" evidence=IEA;IDA

GO:0016559 "peroxisome fission" evidence=IEA;ISS;IMP

GO:0007031 "peroxisome organization" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005777 "peroxisome" evidence=IDA

GO:0042802 "identical protein binding" evidence=IDA

GO:0007623 "circadian rhythm" evidence=IEP

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0009062 "fatty acid catabolic process" evidence=RCA

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

DICTYBASE|DDB_G0289623 pex11 "peroxisomal biogenesis factor 11" [Dictyostelium discoideum (taxid:44689)]

 Score = 87 (35.7 bits), Expect = 8.4e-06, Sum P(3) = 8.4e-06
 Identities = 19/60 (31%), Positives = 33/60 (55%)

Query:   198 EQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLLP 257
             +Q+   +KK NE  L   K+  D+++A  LL++ P   +    G  G +++LI  YQ+ P
Sbjct:   196 DQFNEVIKKKNEIYLNCAKNGSDLIIASTLLKIYP--FSQGTIGISGIISALIGAYQMWP 253

GO:0016559 "peroxisome fission" evidence=IEA

GO:0005779 "integral to peroxisomal membrane" evidence=IEA;ISS

GO:0003674 "molecular_function" evidence=ND

GO:0007165 "signal transduction" evidence=ISS

GO:0007031 "peroxisome organization" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

FB|FBgn0034058 Pex11 "Peroxin 11" [Drosophila melanogaster (taxid:7227)]

 Score = 100 (40.3 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
 Identities = 35/106 (33%), Positives = 48/106 (45%)

Query:    19 NKAEARDKICRAIQYGSKFLSDG------QPGTAQN---VDKSTSLARKVFRLFKFVNDL 69
             N+A  RDKI R IQY S+ + D        P    N   V+   S  RK+ R  K V+  
Sbjct:     9 NQAGGRDKIARLIQYASRAMWDSLESANSNPALVDNFKTVEYILSTFRKLLRFGKCVDVF 68

Query:    70 HALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKV 115
             +  +  +        V L  SK +  S FLF D  +WL R+G+  V
Sbjct:    69 YGALKTIHHPDLNIRVTLTLSKLSQ-SLFLFADHFLWLARTGLTAV 113

GO:0007031 "peroxisome organization" evidence=ISS;IMP

GO:0016559 "peroxisome fission" evidence=IEA

GO:0005779 "integral to peroxisomal membrane" evidence=IEA

TAIR|locus:2202430 PEX11A "AT1G47750" [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 0.00037, P = 0.00037
 Identities = 33/109 (30%), Positives = 56/109 (51%)

Query:    17 YLNKAEARDKICRAIQYGSKFL--SDGQPGTA------QNVDKSTSLARKVFRLFKFVND 68
             YL+K +  DK+ +  +Y +K +  S   P T       ++ + S  ++RK FRL KFV D
Sbjct:    24 YLSKRDGVDKLLKISRYATKIILASSLIPETRSIIPRLKSFESSVGVSRKAFRLGKFVQD 83

Query:    69 LHALISPV-PQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKVK 116
             ++AL S        L L+++      L   + F++Q +WL +SG+   K
Sbjct:    84 INALRSSRWDSNHELVLLIIAYGGEGL---YYFVEQFIWLTKSGLIDAK 129


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.136   0.389    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      265       251   0.00081  114 3  11 22  0.39    33
                                                     32  0.47    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  585 (62 KB)
  Total size of DFA:  153 KB (2092 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.27u 0.12s 17.39t   Elapsed:  00:00:01
  Total cpu time:  17.27u 0.12s 17.39t   Elapsed:  00:00:01
  Start:  Fri May 10 15:37:34 2013   End:  Fri May 10 15:37:35 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005778 "peroxisomal membrane" evidence=ISS

GO:0005779 "integral to peroxisomal membrane" evidence=IEA;IDA

GO:0016559 "peroxisome fission" evidence=IEA;ISS;IMP

GO:0007031 "peroxisome organization" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005777 "peroxisome" evidence=IDA

GO:0042802 "identical protein binding" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q10SM7	PX111_ORYSJ	No assigned EC number	0.7003	0.8830	0.9873	no	no
Q84JW1	PX11E_ARATH	No assigned EC number	0.7283	0.8716	1.0	no	no
O80845	PX11D_ARATH	No assigned EC number	0.7575	0.8830	0.9915	no	no
Q9LQ73	PX11C_ARATH	No assigned EC number	0.7566	0.8792	0.9914	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00021430 SubName- Full=Putative uncharacterized protein; (235 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	265
pfam05648	225	pfam05648, PEX11, Peroxisomal biogenesis factor 11	9e-48

>gnl|CDD|218675 pfam05648, PEX11, Peroxisomal biogenesis factor 11 (PEX11)

 Score =  157 bits (400), Expect = 9e-48
 Identities = 70/258 (27%), Positives = 111/258 (43%), Gaps = 45/258 (17%)

Query: 11  LALVVLYLNKAEARDKICRAIQYGSKFL---------SDGQPGTAQNVDKSTSLARKVFR 61
           L  +V +L+    RDK+ R +QY S+ L         S       +N++   SL+RK+ R
Sbjct: 1   LDHLVRFLDSTVGRDKLLRTLQYASRLLAWYLYRKGSSPELIARLKNLESQFSLSRKLLR 60

Query: 62  LFKFVNDLHALISPVPQGTPLPLV-LLGKSKNALLSTFLFLDQVVWLGRSGIYKVKTVLY 120
           L KF+  L A         P P++ LL   +N   + +L  D ++WL + G+ KVK    
Sbjct: 61  LGKFLEHLQAAAKYYDNKLPDPVLRLLAVLRNLGYALYLPFDHILWLAKIGLLKVK---- 116

Query: 121 VHFRFVSFFLPFPKRSTTMVLLQQNKERAELLGRISLFCWMGSSVCSTLVELGELGRLST 180
                                   N +R     RIS   W+   + S + +L EL +L  
Sbjct: 117 ------------------------NAKR---WSRISSRFWLFGLLLSLVRDLRELRQLQE 149

Query: 181 SMKKLEKEL--KDSDKHKNEQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPR 238
             KKL+KE   +     + +  +  LKK     L LVK+  D+ +A+  L +   +    
Sbjct: 150 KEKKLKKEKDSEGESTSERKLLKKILKKRPAALLDLVKNLCDLFIALNSLGIL--RFNDG 207

Query: 239 VTGAFGFVTSLISCYQLL 256
           + G  G ++SLI  YQL 
Sbjct: 208 LVGLAGTISSLIGIYQLW 225

This family consists of several peroxisomal biogenesis factor 11 (PEX11) proteins from several eukaryotic species. The PEX11 peroxisomal membrane proteins promote peroxisome division in multiple eukaryotes. Length = 225

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	265
PF05648	223	PEX11: Peroxisomal biogenesis factor 11 (PEX11)	100.0
KOG4186	233	consensus Peroxisomal biogenesis protein (peroxin)	100.0

>PF05648 PEX11: Peroxisomal biogenesis factor 11 (PEX11)

Probab=100.00  E-value=9.5e-44  Score=310.29  Aligned_cols=213  Identities=33%  Similarity=0.458  Sum_probs=182.2

Q ss_pred             HHHHHHHhcccchHHHHHHHHHHHHHHcccCC------c---chHhhHHhhhhhhhHHHHhhcchHHHHHhhccCCCCCC
Q 024612           11 LALVVLYLNKAEARDKICRAIQYGSKFLSDGQ------P---GTAQNVDKSTSLARKVFRLFKFVNDLHALISPVPQGTP   81 (265)
Q Consensus        11 l~~~~~~l~t~~GRDKllr~lQY~~kl~~~~~------~---~~~~~l~~~ls~aRk~~Rl~k~l~~~~~~~~~~~~~~~   81 (265)
                      |+++++|+++++||||++|++||++++++|..      +   ..++++++++|++||+||+||++++++++.+...++++
T Consensus         1 l~~~~~~l~~~~GrDK~~r~~qy~~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~aRk~~Rl~k~l~~l~~~~~~~~~~~~   80 (223)
T PF05648_consen    1 LDHFVRFLSSTDGRDKLLRLLQYSSKFLAWYLARRGPSKELSKRLKALSSQLSDARKLFRLGKFLPMLQAARKYIKKKPS   80 (223)
T ss_pred             CHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHccCCChHHHHHHHHHHHHhhhHHHHHHHHccHHHHHHHHHhhccCCc
Confidence            57999999999999999999999999998831      1   24689999999999999999999999999987764444


Q ss_pred             hhHHH-HHHhhhhHhHhHhhhhHHHHhhhcCCcccchhhhhhhccccccCCCCCcchhHHHHhhcHHHHHHHHHHHHHHH
Q 024612           82 LPLVL-LGKSKNALLSTFLFLDQVVWLGRSGIYKVKTVLYVHFRFVSFFLPFPKRSTTMVLLQQNKERAELLGRISLFCW  160 (265)
Q Consensus        82 ~~~~~-l~~~~~~~~~~Y~~~D~v~wl~~~gl~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~s~~fW  160 (265)
                      +...+ +++++++++++|+++||++|++++|+++.+.                               .++++++|++||
T Consensus        81 d~~~~~l~~l~~~~~~~y~~~D~~~wl~~~gl~~~~~-------------------------------~~~~~~~s~~~W  129 (223)
T PF05648_consen   81 DQVLRILEILSNLFMFLYYLLDNLVWLSKLGLLPNKS-------------------------------KKKWSRWSNRFW  129 (223)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcH-------------------------------HHHHHHHHHHHH
Confidence            56555 8899999999999999999999999999621                               338999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhhhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccCCCCccCcchh
Q 024612          161 MGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKNEQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVT  240 (265)
Q Consensus       161 ~~~lv~~~i~~l~~l~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~lv~~~~D~~i~~~~l~~~~~~~~~~~v  240 (265)
                      +++++++++.+++++.++..++++.+++.+++++..++++++.+++++...+++++|+||+++|++++|+  .+++|++|
T Consensus       130 ~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~lv~~~~D~~~~~~~l~~--~~~~~~~v  207 (223)
T PF05648_consen  130 FASLVLSLVRDLRELRRLRQKERSLKKQLKEKDENEEEKLKKLRKERRALLLDLVKNLCDLIIAVHWLGW--LKVSDGVV  207 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--eeCChhhH
Confidence            9999999999999998877766555544333333333335577788999999999999999999999977  78999999


Q ss_pred             hHHHHHHhHHHHHhhC
Q 024612          241 GAFGFVTSLISCYQLL  256 (265)
Q Consensus       241 g~~G~iSsli~~y~~w  256 (265)
                      |++|++||++|+|++|
T Consensus       208 g~~G~iSs~i~~~~~W  223 (223)
T PF05648_consen  208 GLLGLISSLIGLYQLW  223 (223)
T ss_pred             HHHHHHHHHHHHHHhC
Confidence            9999999999999999

>KOG4186 consensus Peroxisomal biogenesis protein (peroxin) [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.6e-40  Score=288.78  Aligned_cols=219  Identities=38%  Similarity=0.513  Sum_probs=175.6

Q ss_pred             HHHHHHHhcccchHHHHHHHHHHHHHHccc----CCcchH---hhHHhhhhhhhHHHHhhcchHHHHHhhccC--CCCCC
Q 024612           11 LALVVLYLNKAEARDKICRAIQYGSKFLSD----GQPGTA---QNVDKSTSLARKVFRLFKFVNDLHALISPV--PQGTP   81 (265)
Q Consensus        11 l~~~~~~l~t~~GRDKllr~lQY~~kl~~~----~~~~~~---~~l~~~ls~aRk~~Rl~k~l~~~~~~~~~~--~~~~~   81 (265)
                      +++++.|+++++||||+||.+||+||+++|    ++|+.+   +++++++|.+||+||+||++++++++.++.  +.+++
T Consensus         1 ~d~lv~~ln~~~gRDKl~RalQY~akll~~~l~~~~p~~a~~~~kles~~S~~RK~~Rl~k~l~~~~~~~~~~~~~~~~~   80 (233)
T KOG4186|consen    1 LDHLVRFLNSAAGRDKLCRALQYVAKLLSWHLEAGSPELAKRLKKLESQLSLARKVLRLGKDLNMFQAALQYGLVPLGTD   80 (233)
T ss_pred             CcHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccCCCCCc
Confidence            478999999999999999999999999999    667754   677889999999999999999999999973  44444


Q ss_pred             hhHHHHHHhhhhHhHhHhhhhHHHHhhhcCCcccchhhhhhhccccccCCCCCcchhHHHHhhcHHHHHHHHHHHHHHHH
Q 024612           82 LPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKVKTVLYVHFRFVSFFLPFPKRSTTMVLLQQNKERAELLGRISLFCWM  161 (265)
Q Consensus        82 ~~~~~l~~~~~~~~~~Y~~~D~v~wl~~~gl~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~s~~fW~  161 (265)
                      .++..+.+++|+.+.+|+++|||.|++++|+++.+                                .++|...+...|.
T Consensus        81 ~~lr~~~~l~n~~~~~Y~~~D~v~Wl~~~gi~~~~--------------------------------~~~~~~~~~~~w~  128 (233)
T KOG4186|consen   81 NVLRLLGVLKNLAFALYLFLDHVLWLARTGIIPVK--------------------------------SERWKISRISLWL  128 (233)
T ss_pred             chhhHHHHHhHHHHHHHHHHHHHHHHHHhCCcccc--------------------------------hHHHHHHHHHHHH
Confidence            43444899999999999999999999999999972                                2467777777777


Q ss_pred             HHHHHHHHHHHHHhhhhhH---HHHHHHHhhhhhhhhhHHHHHHHHh--hhhHHHHHHHHHHHHHHHHhhhccCCCCccC
Q 024612          162 GSSVCSTLVELGELGRLST---SMKKLEKELKDSDKHKNEQYQAKLK--KSNERSLALVKSAMDIVVAVGLLQLAPKKVT  236 (265)
Q Consensus       162 ~~lv~~~i~~l~~l~~l~~---~~~~~~~~~~~~~~~~~e~~~~~~~--~~~~~~l~lv~~~~D~~i~~~~l~~~~~~~~  236 (265)
                      +++..++..+++++..+++   ..++.+++.+++++...+.+++.+.  .++...+....+.||..+|..-++.  .+++
T Consensus       129 ~sl~l~~~r~~~~~~~~~r~~~~~k~~~~~~~~~~e~~~~~l~~~~~~~~~~~l~l~~~~~~~~~~ipl~~L~~--~k~~  206 (233)
T KOG4186|consen  129 LSLGLNLCRDMYEVFELQRLSSSIKKKTKSISSGDEEDREKLQAQQLDQNHRLLLLSADFNAADSALPLGQLGP--GKLN  206 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhccccccccCCCCccHHHHHHHHHHHHHccchHHHHHHHHHHHHHhhhhhccCc--CcCC
Confidence            7777777776666433332   2233344444344444444444444  3777889999999999999999877  8899


Q ss_pred             cchhhHHHHHHhHHHHHhhCCCCcCCC
Q 024612          237 PRVTGAFGFVTSLISCYQLLPAPVKAK  263 (265)
Q Consensus       237 ~~~vg~~G~iSsli~~y~~w~~~~~~~  263 (265)
                      |++||++|++||++|+|++|++.+|.|
T Consensus       207 p~~vGl~G~vSSilg~y~~~~~~~~~k  233 (233)
T KOG4186|consen  207 PRQVGLFGLVSSILGMYQLWPPRPKLK  233 (233)
T ss_pred             hhHhhHHHHHHHHHHHHHHccccccCC
Confidence            999999999999999999999988764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	265
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 2e-05
 Identities = 36/262 (13%), Positives = 70/262 (26%), Gaps = 90/262 (34%)

Query: 12  ALVVLYLNKAEARD----KICRAIQYGSKFL---SDGQPGTAQNVDKSTSLARKVFR--- 61
            L+VL        +    K   A     K L           Q  D  ++          
Sbjct: 246 CLLVL-------LNVQNAKAWNAFNLSCKILLTTRF-----KQVTDFLSAATTTHISLDH 293

Query: 62  ------------LF-KFVN-DLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWL 107
                       L  K+++     L   V    P  L ++ +S    L+T+     V   
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV--- 350

Query: 108 GRSGIYKVKTVLYVHF----------RFVSFFLPFPKRS--TTMVLLQQNKERAELLGRI 155
                 K+ T++               F    + FP  +   T++L         L+   
Sbjct: 351 ---NCDKLTTIIESSLNVLEPAEYRKMFDRLSV-FPPSAHIPTILL--------SLI--- 395

Query: 156 SLFCWMGSSVCSTLVELGELGRLS---------------TSMKKLEKELKDSDKHKN--E 198
               W        +V + +L + S                 ++   K   +   H++  +
Sbjct: 396 ----WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451

Query: 199 QYQAKLKKSNERSLALVKSAMD 220
            Y       ++    L+   +D
Sbjct: 452 HYNIPKTFDSD---DLIPPYLD 470

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00