Citrus Sinensis ID: 024619

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-----
Protein Sequence
MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQVCFFDLL
Secondary Structure (PSIPRED)
cccccccccccEEEEccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHccccccEEEEccccccHHHHHHHHHccccccEEEEEccccHHHHHHHccccccEEEEEccccccccHHcHHHHHHHHHHcccEEEEEcccccccccccccccccEEEEccccccccccHHHccEEEEccHHHHHHHHHHHHcccccccHHHHHHHHHccccHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHccccccccccccccccccccccEcccccccccccccEcccccHHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHcccccccEEEEEccccHHHHHHHHHcHHHHccEEEEEccccHHHHHHHccccccEEEEEcccccccccccHHHHHHHHHccccEEEEEccccccccccHHHHcccEEEEEcccccccccccccEEEEEccHHHHHHHHHHHHHcccEccHHHHHHHHHHHccHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
msveeepgvSTLLMnfsnefdpygalstplyqtatfkqpsatengpydytrsgnptRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGtgeeivagddlyggtdrllsrvtpktGVVVKRVntcdldevasaigpwtklvwvesptnprqqiCDIRKIAEMAHAHGALLLvdnsimspvlsrplelgADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQnaegsglapfdcwiCLRGVKTMALRVEKQQVCFFDLL
Flexible Loop (DISEMBL)
MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRllsrvtpktgvvvkrvntcdldevasaigpwtklvwvesptnPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQVCFFDLL
Low Complexity Region (SEG)
MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESllakldkadralCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQVCFFDLL
Disordered region (IsUnstruct)
***********LLMNFSNEFDPYGALSTPLYQT*****************************LLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQVCFFD**
Disordered Region (DISOPRED)
******P****LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQV*FFDLL
Disordered Region (DISEMBL)
*********STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQVCFFDLL
Disordered Region (DISPRO)
******PGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQVCFFDLL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQVCFFDLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	265	2.2.26 [Sep-21-2011]
P53780	464	Cystathionine beta-lyase,	yes	no	0.973	0.556	0.848	1e-133
O94350	390	Cystathionine beta-lyase	yes	no	0.943	0.641	0.496	6e-66
A2RM21	380	Cystathionine beta-lyase	yes	no	0.875	0.610	0.469	1e-62
P0A4K2	380	Cystathionine beta-lyase	yes	no	0.875	0.610	0.469	1e-62
O31632	390	Cystathionine beta-lyase	yes	no	0.879	0.597	0.476	4e-62
O05394	379	Cystathionine gamma-lyase	no	no	0.875	0.612	0.452	2e-61
Q55DV9	387	Cystathionine gamma-lyase	yes	no	0.901	0.617	0.461	3e-61
P0C2T9	380	Cystathionine beta-lyase	N/A	no	0.875	0.610	0.465	4e-61
Q1M0P5	380	Cystathionine gamma-synth	yes	no	0.886	0.618	0.455	9e-60
P56069	380	Cystathionine gamma-synth	yes	no	0.886	0.618	0.455	2e-59

>sp|P53780|METC_ARATH Cystathionine beta-lyase, chloroplastic OS=Arabidopsis thaliana GN=At3g57050 PE=1 SV=1

 Score =  473 bits (1216), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 219/258 (84%), Positives = 243/258 (94%)

Query: 1   MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDAL 60
           M+++EE  VSTLL+N  N+FDP+ A+STPLYQTATFKQPSA ENGPYDYTRSGNPTRDAL
Sbjct: 79  MNIKEEASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDAL 138

Query: 61  ESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
           ESLLAKLDKADRA CFTSGMAAL+AVTHL+  GEEIVAGDD+YGG+DRLLS+V P++GVV
Sbjct: 139 ESLLAKLDKADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVV 198

Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS 180
           VKRVNT  LDEVA+AIGP TKLVW+ESPTNPRQQI DIRKI+EMAHA GAL+LVDNSIMS
Sbjct: 199 VKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMS 258

Query: 181 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC 240
           PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDC
Sbjct: 259 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDC 318

Query: 241 WICLRGVKTMALRVEKQQ 258
           W+CLRG+KTMALR+EKQQ
Sbjct: 319 WLCLRGIKTMALRIEKQQ 336

Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 4EC: .EC: 1EC: .EC: 8

>sp|O94350|CBL_SCHPO Cystathionine beta-lyase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=str3 PE=3 SV=4

 Score =  250 bits (639), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 125/252 (49%), Positives = 168/252 (66%), Gaps = 2/252 (0%)

Query: 9   VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD 68
           V T L++     D Y A S P+YQ+ATFKQP     G +DYTRSGNPTR  L+  LAKL 
Sbjct: 9   VDTELVHVEGNEDQYHASSVPIYQSATFKQPCLEHMGKFDYTRSGNPTRSVLQVHLAKLM 68

Query: 69  KADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCD 128
           KA  A   ++GM+AL  +     +   +VAG DLYGG+DRLLS    + G  V  V+T D
Sbjct: 69  KAKHAFVTSNGMSALDMILRCCKSNSHVVAGHDLYGGSDRLLSFNQRQYGFKVDNVDTSD 128

Query: 129 LDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEM--AHAHGALLLVDNSIMSPVLSRP 186
           L    +A+ P T LV +ESPTNPR  ICDIR I ++  + A  ALL++DN+++SPVL  P
Sbjct: 129 LAAFEAALRPDTNLVLIESPTNPRISICDIRAIVKITRSKAKDALLVMDNTMLSPVLCNP 188

Query: 187 LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRG 246
           L+ G DIV  SATK+++GH D+M GV+A K + +AK ++F  NA G+ +APF+C++ LRG
Sbjct: 189 LDFGYDIVYESATKYLSGHHDLMGGVIATKSDEIAKSVFFNINAMGAAMAPFECFLLLRG 248

Query: 247 VKTMALRVEKQQ 258
           +KTM LRVE+ Q
Sbjct: 249 IKTMGLRVERAQ 260

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

>sp|A2RM21|METC_LACLM Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=metC PE=1 SV=1

 Score =  239 bits (611), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 109/232 (46%), Positives = 162/232 (69%)

Query: 24  GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL 83
           GA+S P+YQT+T+KQ    +   Y+Y+RSGNPTR ALE L+A L+   +   F+SG+A +
Sbjct: 20  GAVSVPIYQTSTYKQNGLGQPKEYEYSRSGNPTRHALEELIADLEGGVQGFAFSSGLAGI 79

Query: 84  AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLV 143
            AV  L   G+ I+  DD+YGGT RL+ +V  KTG++   V+  +LD++ +A    TK +
Sbjct: 80  HAVLSLFSAGDHIILADDVYGGTFRLMDKVLTKTGIIYDLVDLSNLDDLKAAFKEETKAI 139

Query: 144 WVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA 203
           + E+P+NP  ++ DI++I+ +A AH AL LVDN+  +P L +P+ LGADIV+HSATK++ 
Sbjct: 140 YFETPSNPLLKVLDIKEISAIAKAHDALTLVDNTFATPYLQQPIALGADIVLHSATKYLG 199

Query: 204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVE 255
           GHSDV+AG++    + LA E+ FLQN+ G+ L P D W+  RG+KT+ALR+E
Sbjct: 200 GHSDVVAGLVTTNSKELASEIGFLQNSIGAVLGPQDSWLVQRGIKTLALRME 251

The enzymatic degradation of amino acids in cheese is believed to generate aroma compounds and therefore to be essential for flavor development. Cystathionine beta-lyase (CBL) can convert cystathionine to homocysteine but is also able to catalyze an alpha, gamma elimination. With methionine as a substrate, it produces volatile sulfur compounds which are important for flavor formation in Gouda cheese.

Lactococcus lactis subsp. cremoris (strain MG1363) (taxid: 416870)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

>sp|P0A4K2|METC_LACLA Cystathionine beta-lyase OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=metC PE=3 SV=1

 Score =  239 bits (611), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 109/232 (46%), Positives = 162/232 (69%)

Query: 24  GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL 83
           GA+S P+YQT+T+KQ    +   Y+Y+RSGNPTR ALE L+A L+   +   F+SG+A +
Sbjct: 20  GAVSVPIYQTSTYKQNGLGQPKEYEYSRSGNPTRHALEELIADLEGGVQGFAFSSGLAGI 79

Query: 84  AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLV 143
            AV  L   G+ I+  DD+YGGT RL+ +V  KTG++   V+  +LD++ +A    TK +
Sbjct: 80  HAVLSLFSAGDHIILADDVYGGTFRLMDKVLTKTGIIYDLVDLSNLDDLKAAFKEETKAI 139

Query: 144 WVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA 203
           + E+P+NP  ++ DI++I+ +A AH AL LVDN+  +P L +P+ LGADIV+HSATK++ 
Sbjct: 140 YFETPSNPLLKVLDIKEISAIAKAHDALTLVDNTFATPYLQQPIALGADIVLHSATKYLG 199

Query: 204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVE 255
           GHSDV+AG++    + LA E+ FLQN+ G+ L P D W+  RG+KT+ALR+E
Sbjct: 200 GHSDVVAGLVTTNSKELASEIGFLQNSIGAVLGPQDSWLVQRGIKTLALRME 251

The enzymatic degradation of amino acids in cheese is believed to generate aroma compounds and therefore to be essential for flavor development. Cystathionine beta-lyase (CBL) can convert cystathionine to homocysteine but is also able to catalyze an alpha, gamma elimination. With methionine as a substrate, it produces volatile sulfur compounds which are important for flavor formation in Gouda cheese.

Lactococcus lactis subsp. lactis (strain IL1403) (taxid: 272623)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

>sp|O31632|METC_BACSU Cystathionine beta-lyase MetC OS=Bacillus subtilis (strain 168) GN=metC PE=1 SV=1

 Score =  238 bits (606), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 111/233 (47%), Positives = 161/233 (69%)

Query: 24  GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL 83
           GA+S P+   +TF Q S  E G YDY+RSG PTR ALE  +A L+   R   F+SGMAA+
Sbjct: 24  GAVSVPIQHASTFHQSSFEEFGAYDYSRSGTPTRTALEETIAALEGGTRGFAFSSGMAAI 83

Query: 84  AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLV 143
           +    LL  G+ ++  +D+YGGT R+++ V  + G+    V+  D +EVA +I P TK++
Sbjct: 84  STAFLLLSQGDHVLVTEDVYGGTFRMVTEVLTRFGIEHTFVDMTDRNEVARSIKPNTKVI 143

Query: 144 WVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA 203
           ++E+P+NP   I DI+ + ++A  +G L  +DN+ M+P L RPL+LG DIV+HSATKF++
Sbjct: 144 YMETPSNPTLGITDIKAVVQLAKENGCLTFLDNTFMTPALQRPLDLGVDIVLHSATKFLS 203

Query: 204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEK 256
           GHSDV++G+ AVK E L K+LY LQNA G+ L   DCW+ LRG+KT+ +R+EK
Sbjct: 204 GHSDVLSGLAAVKDEELGKQLYKLQNAFGAVLGVQDCWLVLRGLKTLQVRLEK 256

Catalyzes the transformation of cystathionine into homocysteine. Also exhibits cysteine desulfhydrase activity in vitro, producing sulfide from cysteine.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

>sp|O05394|MCCB_BACSU Cystathionine gamma-lyase OS=Bacillus subtilis (strain 168) GN=mccB PE=1 SV=1

 Score =  235 bits (600), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 105/232 (45%), Positives = 162/232 (69%)

Query: 24  GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL 83
           GA+S P+YQ +T+KQP A ++  Y+Y+R+ NPTR ALE+L+ +L+  +    F+SGMAA+
Sbjct: 19  GAVSVPIYQVSTYKQPKAGQHTGYEYSRTANPTRTALEALVTELESGEAGYAFSSGMAAI 78

Query: 84  AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLV 143
            AV  L  +G+ +V  DD+YGGT R++++V  + G+    V+T   +EV  AI P TK +
Sbjct: 79  TAVMMLFNSGDHVVLTDDVYGGTYRVMTKVLNRLGIESTFVDTSSREEVEKAIRPNTKAI 138

Query: 144 WVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA 203
           ++E+PTNP  +I D+  +A++A   G LL+VDN+  +P   +PL LGADIV+HSATK++ 
Sbjct: 139 YIETPTNPLLKITDLTLMADIAKKAGVLLIVDNTFNTPYFQQPLTLGADIVLHSATKYLG 198

Query: 204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVE 255
           GHSDV+ G++    + L +EL+F+QN+ G  L P D W+ +RG+KT+ LR+E
Sbjct: 199 GHSDVVGGLVVTASKELGEELHFVQNSTGGVLGPQDSWLLMRGIKTLGLRME 250

Catalyzes the conversion of cystathionine to cysteine, and homocysteine to sulfide.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

>sp|Q55DV9|CGL_DICDI Cystathionine gamma-lyase OS=Dictyostelium discoideum GN=cysA PE=1 SV=1

 Score =  235 bits (599), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 113/245 (46%), Positives = 160/245 (65%), Gaps = 6/245 (2%)

Query: 24  GALSTPLYQTATFKQPS-ATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAA 82
           GA+  P+  + TF QPS    +  YDY+RSGNPTR A E  +A  + A  AL F SG+A 
Sbjct: 25  GAVIVPISLSTTFLQPSPGVLHSEYDYSRSGNPTRKAFEECIAACENAKYALSFASGLAT 84

Query: 83  LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKL 142
           L  +THLL +G+E+++ DD+YGGT R  +RV     +    V+   LD++ +A    T+L
Sbjct: 85  LTTITHLLKSGDEVISIDDVYGGTRRYFTRVAANFDLKFSFVDLSTLDDLKNAFTDKTRL 144

Query: 143 VWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFI 202
           VW+E+PTNP  ++ DI+ +A+  H+ GA L+VDN+ MSP    PL+LGADIVMHS TK+I
Sbjct: 145 VWIETPTNPLLKVADIKAVADYVHSRGATLVVDNTFMSPYFQNPLDLGADIVMHSVTKYI 204

Query: 203 AGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ---- 258
            GHSD + GVLA   + L  +L FLQN+ G+  +PFDC++ LRG+KT+ +R+E  Q    
Sbjct: 205 NGHSDCVMGVLATNNDELYAKLKFLQNSIGAVPSPFDCFLALRGLKTLHVRMEAHQKNAF 264

Query: 259 -VCFF 262
            +C F
Sbjct: 265 AICNF 269

Dictyostelium discoideum (taxid: 44689)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

>sp|P0C2T9|METC_LACLC Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris GN=metC PE=1 SV=1

 Score =  234 bits (597), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 108/232 (46%), Positives = 160/232 (68%)

Query: 24  GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL 83
           GA+S P+YQT+T+KQ    +   Y+Y+RSGNPTR ALE L+A L+   +   F+SG+A +
Sbjct: 20  GAVSVPIYQTSTYKQNGLGQPKEYEYSRSGNPTRHALEELIADLEGGVQGFAFSSGLAGI 79

Query: 84  AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLV 143
            AV  L   G+ I+  DD+YGGT RL+ +V  KTG++   V+  +L+++ +A    TK V
Sbjct: 80  HAVLSLFSAGDHIILADDVYGGTFRLVDKVLTKTGIIYDLVDLSNLEDLKAAFKAETKAV 139

Query: 144 WVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA 203
           + E+P+NP  ++ DI++I+ +A AH AL LVDN+  +P L +P+ LGADIV+HSATK++ 
Sbjct: 140 YFETPSNPLLKVLDIKEISSIAKAHNALTLVDNTFATPYLQQPIALGADIVLHSATKYLG 199

Query: 204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVE 255
           GHSDV+AG++      LA E+ FLQN+ G+ L P D W+  RG+KT+A R+E
Sbjct: 200 GHSDVVAGLVTTNSNELAIEIGFLQNSIGAVLGPQDSWLVQRGIKTLAPRME 251

The enzymatic degradation of amino acids in cheese is believed to generate aroma compounds and therefore to be essential for flavor development. Cystathionine beta-lyase (CBL) can convert cystathionine to homocysteine but is also able to catalyze an alpha, gamma elimination. With methionine as a substrate, it produces volatile sulfur compounds which are important for flavor formation in Gouda cheese.

Lactococcus lactis subsp. cremoris (taxid: 1359)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

>sp|Q1M0P5|METB_HELPX Cystathionine gamma-synthase OS=Helicobacter pylori GN=metB PE=1 SV=1

 Score =  230 bits (586), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 107/235 (45%), Positives = 158/235 (67%)

Query: 24  GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL 83
           GA+S P+YQT+T++Q +   +  Y+Y+RSGNPTR ALE L+A L+   +   F SG+A +
Sbjct: 19  GAVSVPIYQTSTYRQDAIGHHKGYEYSRSGNPTRFALEELIADLEGGVKGFAFASGLAGI 78

Query: 84  AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLV 143
            AV  LL +G+ ++ GDD+YGGT RL ++V  K G+    ++T DL ++  AI P TK +
Sbjct: 79  HAVFSLLQSGDHVLLGDDVYGGTFRLFNKVLVKNGLSCTIIDTSDLSQIKKAIKPNTKAL 138

Query: 144 WVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA 203
           ++E+P+NP  +I D+ + A +A  HG L +VDN+  +P    PL LGADIV+HS TK++ 
Sbjct: 139 YLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQNPLLLGADIVVHSGTKYLG 198

Query: 204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ 258
           GHSDV+AG++    E LA+E+ F QNA G  L P D W+  RG+KT+ LR++  Q
Sbjct: 199 GHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQRGIKTLGLRMQAHQ 253

Catalyzes the formation of L-cystathionine from O-succinyl-L-homoserine (OSHS) and L-cysteine, via a gamma-replacement reaction (By similarity). In the absence of thiol, catalyzes gamma-elimination to form 2-oxobutanoate, succinate and ammonia.

Helicobacter pylori (taxid: 210)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|P56069|METB_HELPY Cystathionine gamma-synthase OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=metB PE=3 SV=1

 Score =  229 bits (584), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 107/235 (45%), Positives = 157/235 (66%)

Query: 24  GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL 83
           GA+S P+YQT+T++Q +   +  Y+Y+RSGNPTR ALE L+A L+   +   F SG+A +
Sbjct: 19  GAVSVPIYQTSTYRQDAIGRHKGYEYSRSGNPTRFALEELIADLEGGVKGFAFASGLAGI 78

Query: 84  AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLV 143
            AV  LL +G+ ++ GDD+YGGT RL ++V  K G+    ++T D+ ++  AI P TK +
Sbjct: 79  HAVFSLLQSGDHVLLGDDVYGGTFRLFNQVLVKNGLSCTIIDTSDISQIKKAIKPNTKAL 138

Query: 144 WVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA 203
           ++E+P+NP  +I D+ + A +A  HG L +VDN+  +P    PL LGADIV HS TK++ 
Sbjct: 139 YLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQNPLLLGADIVAHSGTKYLG 198

Query: 204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ 258
           GHSDV+AG++    E LA+E+ F QNA G  L P D W+  RG+KT+ LR+E  Q
Sbjct: 199 GHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQRGIKTLGLRMEAHQ 253

Catalyzes the formation of L-cystathionine from O-succinyl-L-homoserine (OSHS) and L-cysteine, via a gamma-replacement reaction. In the absence of thiol, catalyzes gamma-elimination to form 2-oxobutanoate, succinate and ammonia.

Helicobacter pylori (strain ATCC 700392 / 26695) (taxid: 85962)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
255543511	467	cystathionine beta-lyase, putative [Rici	0.958	0.543	0.881	1e-134
15230203	464	cystathionine beta-lyase [Arabidopsis th	0.973	0.556	0.848	1e-131
30694567	378	cystathionine beta-lyase [Arabidopsis th	0.973	0.682	0.848	1e-131
297820494	449	cystathionine beta-lyase [Arabidopsis ly	0.973	0.574	0.852	1e-131
30694565	449	cystathionine beta-lyase [Arabidopsis th	0.973	0.574	0.848	1e-131
449452983	459	PREDICTED: cystathionine beta-lyase, chl	0.962	0.555	0.854	1e-130
449519446	409	PREDICTED: cystathionine beta-lyase, chl	0.962	0.623	0.854	1e-130
356571951	467	PREDICTED: cystathionine beta-lyase, chl	0.973	0.552	0.832	1e-129
8439539	471	cystathionine beta-lyase [Solanum tubero	0.958	0.539	0.846	1e-129
307136146	487	cystathionine beta-lyase [Cucumis melo s	0.962	0.523	0.847	1e-127

>gi|255543511|ref|XP_002512818.1| cystathionine beta-lyase, putative [Ricinus communis] gi|223547829|gb|EEF49321.1| cystathionine beta-lyase, putative [Ricinus communis]

 Score =  481 bits (1239), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 224/254 (88%), Positives = 244/254 (96%)

Query: 5   EEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLL 64
            EP +ST+LMNF N+FDPY A+S PLYQTATFKQPSATENGPYDYTRSGNPTRDALESLL
Sbjct: 86  REPNISTILMNFENKFDPYDAMSMPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLL 145

Query: 65  AKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV 124
           AKLDKADRA CFTSGMAALAAVTHL+ TG+EI+AGDD+YGG+DRLLS+VTPK+GVVVKRV
Sbjct: 146 AKLDKADRAFCFTSGMAALAAVTHLVETGQEIIAGDDIYGGSDRLLSQVTPKSGVVVKRV 205

Query: 125 NTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS 184
           NT +LDEVASAIGPWTKLVW+ESPTNPRQQI DIRKIA++AH HGAL+LVDNSIMSPVLS
Sbjct: 206 NTSNLDEVASAIGPWTKLVWLESPTNPRQQISDIRKIAKIAHTHGALVLVDNSIMSPVLS 265

Query: 185 RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL 244
           +PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA++LYFLQNAEGSGLAPFDCWICL
Sbjct: 266 QPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLARDLYFLQNAEGSGLAPFDCWICL 325

Query: 245 RGVKTMALRVEKQQ 258
           RG+KTMALRVEKQQ
Sbjct: 326 RGIKTMALRVEKQQ 339

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230203|ref|NP_191264.1| cystathionine beta-lyase [Arabidopsis thaliana] gi|1708993|sp|P53780.1|METC_ARATH RecName: Full=Cystathionine beta-lyase, chloroplastic; Short=CBL; AltName: Full=Beta-cystathionase; AltName: Full=Cysteine lyase; Flags: Precursor gi|13786771|pdb|1IBJ|A Chain A, Crystal Structure Of Cystathionine Beta-Lyase From Arabidopsis Thaliana gi|13786772|pdb|1IBJ|C Chain C, Crystal Structure Of Cystathionine Beta-Lyase From Arabidopsis Thaliana gi|704397|gb|AAA99176.1| cystathionine beta-lyase [Arabidopsis thaliana] gi|6911875|emb|CAB72175.1| CYSTATHIONINE BETA-LYASE PRECURSOR (CBL) [Arabidopsis thaliana] gi|222423596|dbj|BAH19767.1| AT3G57050 [Arabidopsis thaliana] gi|332646082|gb|AEE79603.1| cystathionine beta-lyase [Arabidopsis thaliana]

 Score =  473 bits (1216), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 219/258 (84%), Positives = 243/258 (94%)

Query: 1   MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDAL 60
           M+++EE  VSTLL+N  N+FDP+ A+STPLYQTATFKQPSA ENGPYDYTRSGNPTRDAL
Sbjct: 79  MNIKEEASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDAL 138

Query: 61  ESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
           ESLLAKLDKADRA CFTSGMAAL+AVTHL+  GEEIVAGDD+YGG+DRLLS+V P++GVV
Sbjct: 139 ESLLAKLDKADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVV 198

Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS 180
           VKRVNT  LDEVA+AIGP TKLVW+ESPTNPRQQI DIRKI+EMAHA GAL+LVDNSIMS
Sbjct: 199 VKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMS 258

Query: 181 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC 240
           PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDC
Sbjct: 259 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDC 318

Query: 241 WICLRGVKTMALRVEKQQ 258
           W+CLRG+KTMALR+EKQQ
Sbjct: 319 WLCLRGIKTMALRIEKQQ 336

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30694567|ref|NP_850713.1| cystathionine beta-lyase [Arabidopsis thaliana] gi|332646083|gb|AEE79604.1| cystathionine beta-lyase [Arabidopsis thaliana]

 Score =  472 bits (1215), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 219/258 (84%), Positives = 243/258 (94%)

Query: 1   MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDAL 60
           M+++EE  VSTLL+N  N+FDP+ A+STPLYQTATFKQPSA ENGPYDYTRSGNPTRDAL
Sbjct: 79  MNIKEEASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDAL 138

Query: 61  ESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
           ESLLAKLDKADRA CFTSGMAAL+AVTHL+  GEEIVAGDD+YGG+DRLLS+V P++GVV
Sbjct: 139 ESLLAKLDKADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVV 198

Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS 180
           VKRVNT  LDEVA+AIGP TKLVW+ESPTNPRQQI DIRKI+EMAHA GAL+LVDNSIMS
Sbjct: 199 VKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMS 258

Query: 181 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC 240
           PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDC
Sbjct: 259 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDC 318

Query: 241 WICLRGVKTMALRVEKQQ 258
           W+CLRG+KTMALR+EKQQ
Sbjct: 319 WLCLRGIKTMALRIEKQQ 336

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297820494|ref|XP_002878130.1| cystathionine beta-lyase [Arabidopsis lyrata subsp. lyrata] gi|297323968|gb|EFH54389.1| cystathionine beta-lyase [Arabidopsis lyrata subsp. lyrata]

 Score =  472 bits (1214), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 220/258 (85%), Positives = 244/258 (94%)

Query: 1   MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDAL 60
           M+++EE  VSTLL+N  N+FDP+ A+STPLYQTATFKQPSA ENGPYDYTRSGNPTRDAL
Sbjct: 64  MNIKEEASVSTLLVNLDNKFDPFEAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDAL 123

Query: 61  ESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
           ESLLAKLDKADRA CFTSGMAAL+AVTHL+  GEEIVAGDD+YGG+DRLLS+V P++GVV
Sbjct: 124 ESLLAKLDKADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVV 183

Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS 180
           VKRVNT +LDEVA+AIGP TKLVW+ESPTNPRQQI DIRKIAEMAHA GAL+LVDNSIMS
Sbjct: 184 VKRVNTTNLDEVAAAIGPRTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMS 243

Query: 181 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC 240
           PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDC
Sbjct: 244 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDC 303

Query: 241 WICLRGVKTMALRVEKQQ 258
           W+CLRG+KTMALR+EKQQ
Sbjct: 304 WLCLRGIKTMALRIEKQQ 321

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30694565|ref|NP_850712.1| cystathionine beta-lyase [Arabidopsis thaliana] gi|17381124|gb|AAL36374.1| putative cystathionine beta-lyase precursor CBL [Arabidopsis thaliana] gi|21281081|gb|AAM45099.1| putative cystathionine beta-lyase precursor CBL [Arabidopsis thaliana] gi|332646084|gb|AEE79605.1| cystathionine beta-lyase [Arabidopsis thaliana]

 Score =  472 bits (1214), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 219/258 (84%), Positives = 243/258 (94%)

Query: 1   MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDAL 60
           M+++EE  VSTLL+N  N+FDP+ A+STPLYQTATFKQPSA ENGPYDYTRSGNPTRDAL
Sbjct: 64  MNIKEEASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDAL 123

Query: 61  ESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
           ESLLAKLDKADRA CFTSGMAAL+AVTHL+  GEEIVAGDD+YGG+DRLLS+V P++GVV
Sbjct: 124 ESLLAKLDKADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVV 183

Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS 180
           VKRVNT  LDEVA+AIGP TKLVW+ESPTNPRQQI DIRKI+EMAHA GAL+LVDNSIMS
Sbjct: 184 VKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMS 243

Query: 181 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC 240
           PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDC
Sbjct: 244 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDC 303

Query: 241 WICLRGVKTMALRVEKQQ 258
           W+CLRG+KTMALR+EKQQ
Sbjct: 304 WLCLRGIKTMALRIEKQQ 321

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452983|ref|XP_004144238.1| PREDICTED: cystathionine beta-lyase, chloroplastic-like [Cucumis sativus]

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 218/255 (85%), Positives = 242/255 (94%)

Query: 4   EEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESL 63
           EEEP +ST++MNF ++FDPYGA+STPLYQTATFKQP+ATENGPYDYTRSGNPTRDALESL
Sbjct: 77  EEEPSISTMIMNFESKFDPYGAVSTPLYQTATFKQPTATENGPYDYTRSGNPTRDALESL 136

Query: 64  LAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKR 123
           LA+L+KADRALCFTSGMAAL+AV  L+GTGEEIVAGDD+YGG+DRLLS+V P+ G+VVKR
Sbjct: 137 LAELEKADRALCFTSGMAALSAVAQLVGTGEEIVAGDDIYGGSDRLLSQVIPRRGIVVKR 196

Query: 124 VNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL 183
           VNT DLDEV+SAIGP TKLVW+ESPTNPR QI DIR IA MAH HGAL+LVDNSI+SPVL
Sbjct: 197 VNTSDLDEVSSAIGPLTKLVWLESPTNPRLQISDIRTIATMAHKHGALVLVDNSILSPVL 256

Query: 184 SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC 243
           SRPL+LGADIVMHSATKFIAGHSDVMAGVLAV+GERLAKELYFLQNAEGSGLAPFDCWIC
Sbjct: 257 SRPLDLGADIVMHSATKFIAGHSDVMAGVLAVRGERLAKELYFLQNAEGSGLAPFDCWIC 316

Query: 244 LRGVKTMALRVEKQQ 258
           LRG+KT+ALRVEKQQ
Sbjct: 317 LRGIKTLALRVEKQQ 331

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449519446|ref|XP_004166746.1| PREDICTED: cystathionine beta-lyase, chloroplastic-like [Cucumis sativus]

 Score =  469 bits (1206), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 218/255 (85%), Positives = 242/255 (94%)

Query: 4   EEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESL 63
           EEEP +ST++MNF ++FDPYGA+STPLYQTATFKQP+ATENGPYDYTRSGNPTRDALESL
Sbjct: 27  EEEPSISTMIMNFESKFDPYGAVSTPLYQTATFKQPTATENGPYDYTRSGNPTRDALESL 86

Query: 64  LAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKR 123
           LA+L+KADRALCFTSGMAAL+AV  L+GTGEEIVAGDD+YGG+DRLLS+V P+ G+VVKR
Sbjct: 87  LAELEKADRALCFTSGMAALSAVAQLVGTGEEIVAGDDIYGGSDRLLSQVIPRRGIVVKR 146

Query: 124 VNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL 183
           VNT DLDEV+SAIGP TKLVW+ESPTNPR QI DIR IA MAH HGAL+LVDNSI+SPVL
Sbjct: 147 VNTSDLDEVSSAIGPLTKLVWLESPTNPRLQISDIRTIAIMAHKHGALVLVDNSILSPVL 206

Query: 184 SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC 243
           SRPL+LGADIVMHSATKFIAGHSDVMAGVLAV+GERLAKELYFLQNAEGSGLAPFDCWIC
Sbjct: 207 SRPLDLGADIVMHSATKFIAGHSDVMAGVLAVRGERLAKELYFLQNAEGSGLAPFDCWIC 266

Query: 244 LRGVKTMALRVEKQQ 258
           LRG+KT+ALRVEKQQ
Sbjct: 267 LRGIKTLALRVEKQQ 281

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571951|ref|XP_003554134.1| PREDICTED: cystathionine beta-lyase, chloroplastic-like [Glycine max]

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 218/262 (83%), Positives = 245/262 (93%), Gaps = 4/262 (1%)

Query: 1   MSVEEE----PGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPT 56
           MS+ EE    P +ST++MNF ++FDP+GA+STPLYQTATFKQPSA ENGPYDYTRSGNPT
Sbjct: 78  MSLSEEDLGEPSISTMVMNFESKFDPFGAISTPLYQTATFKQPSAIENGPYDYTRSGNPT 137

Query: 57  RDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPK 116
           RDALESLLAKLDKADRALCFTSGMAAL+AV  L+GTGEEIV GDD+YGG+DRLLS+V P+
Sbjct: 138 RDALESLLAKLDKADRALCFTSGMAALSAVVRLVGTGEEIVTGDDVYGGSDRLLSQVVPR 197

Query: 117 TGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDN 176
           TG+VVKRVNTCDLDEVA+AIG  TKLVW+ESPTNPR QI DIRKI+EMAH+HGAL+LVDN
Sbjct: 198 TGIVVKRVNTCDLDEVAAAIGLRTKLVWLESPTNPRLQISDIRKISEMAHSHGALVLVDN 257

Query: 177 SIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA 236
           SIMSPVLS+PLELGADIVMHSATKFIAGHSD+MAGVLAVKGE+L KE+YFLQNAEGSGLA
Sbjct: 258 SIMSPVLSQPLELGADIVMHSATKFIAGHSDIMAGVLAVKGEKLEKEMYFLQNAEGSGLA 317

Query: 237 PFDCWICLRGVKTMALRVEKQQ 258
           PFDCW+CLRG+KTMALR+EKQQ
Sbjct: 318 PFDCWLCLRGIKTMALRIEKQQ 339

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8439539|gb|AAF74980.1|AF082890_1 cystathionine beta-lyase [Solanum tuberosum]

 Score =  465 bits (1197), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 215/254 (84%), Positives = 240/254 (94%)

Query: 5   EEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLL 64
           +EP VST+LMNFSN+FDPYGALSTPLYQT+TFKQPSATENG YDYTRSGNPTRDALE LL
Sbjct: 90  KEPSVSTMLMNFSNDFDPYGALSTPLYQTSTFKQPSATENGQYDYTRSGNPTRDALEKLL 149

Query: 65  AKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV 124
           A+L+KADRA CFTSGMAALAAVT L+  GEEIVAGDD+YGG+DRLLS+V PK G+VVKRV
Sbjct: 150 AELEKADRAFCFTSGMAALAAVTRLVKAGEEIVAGDDIYGGSDRLLSQVVPKAGIVVKRV 209

Query: 125 NTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS 184
           +T +LDEVAS I PWTKL+W+ESPTNPRQQICDIRKIA++AHAHGAL+LVDNSIMSPVLS
Sbjct: 210 DTTNLDEVASVIKPWTKLIWLESPTNPRQQICDIRKIAKIAHAHGALVLVDNSIMSPVLS 269

Query: 185 RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL 244
            PLELGADIVMHSATKFI+GHSD+MAGVLAV+GE LAKE+YFLQNAEG+GLAPFDCW+CL
Sbjct: 270 HPLELGADIVMHSATKFISGHSDLMAGVLAVRGESLAKEVYFLQNAEGAGLAPFDCWLCL 329

Query: 245 RGVKTMALRVEKQQ 258
           RG+KTMALRVEKQQ
Sbjct: 330 RGIKTMALRVEKQQ 343

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307136146|gb|ADN33990.1| cystathionine beta-lyase [Cucumis melo subsp. melo]

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 216/255 (84%), Positives = 239/255 (93%)

Query: 4   EEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESL 63
           EEEP +ST++MNF ++FDPYGA+STPLYQTATFKQP+ATENGPYDYTRSGNPTRDALE L
Sbjct: 77  EEEPSISTMIMNFESKFDPYGAVSTPLYQTATFKQPTATENGPYDYTRSGNPTRDALERL 136

Query: 64  LAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKR 123
           LA+L+KADRA CFTSGMAAL+AV  L+GTGEEIVAGDDLYGG+DRLLS+V P+ G+VVKR
Sbjct: 137 LAELEKADRAFCFTSGMAALSAVAQLVGTGEEIVAGDDLYGGSDRLLSQVIPRRGIVVKR 196

Query: 124 VNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL 183
           VNT DLDEV+SAIG  TKLVW+ESPTNPR QI DIR IA MAH HGAL+LVDNSI+SPVL
Sbjct: 197 VNTSDLDEVSSAIGSLTKLVWLESPTNPRLQISDIRTIAIMAHKHGALVLVDNSILSPVL 256

Query: 184 SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC 243
           SRPL+LGADIVMHSATKFIAGHSDVMAGVLAV+GERLAKELYFLQNAEGSGLAPFDCWIC
Sbjct: 257 SRPLDLGADIVMHSATKFIAGHSDVMAGVLAVRGERLAKELYFLQNAEGSGLAPFDCWIC 316

Query: 244 LRGVKTMALRVEKQQ 258
           LRG+KT+ALRVEKQQ
Sbjct: 317 LRGIKTLALRVEKQQ 331

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
TAIR|locus:2080605	464	CBL "cystathionine beta-lyase"	0.973	0.556	0.806	1.8e-110
CGD|CAL0004561	404	orf19.2092 [Candida albicans (	0.966	0.633	0.471	8.1e-60
ASPGD|ASPL0000069608	458	metG [Emericella nidulans (tax	0.939	0.543	0.484	6.6e-58
UNIPROTKB|G4MSN2	454	MGG_07074 "Cystathionine beta-	0.898	0.524	0.481	1.1e-57
POMBASE|SPCC11E10.01	390	SPCC11E10.01 "cystathionine be	0.943	0.641	0.468	5.3e-56
TIGR_CMR|BA_4481	387	BA_4481 "cystathionine beta-ly	0.932	0.638	0.447	3e-53
DICTYBASE|DDB_G0269122	387	cysA "cystathionine gamma-lyas	0.886	0.607	0.453	3.8e-53
UNIPROTKB|Q81LL6	377	BAS4268 "Cys/Met metabolism PL	0.886	0.623	0.434	1.3e-52
TIGR_CMR|BA_4600	377	BA_4600 "cystathionine beta-ly	0.886	0.623	0.434	1.3e-52
TIGR_CMR|GSU_0945	378	GSU_0945 "cystathionine beta-l	0.935	0.656	0.425	4.4e-52

TAIR|locus:2080605 CBL "cystathionine beta-lyase" [Arabidopsis thaliana (taxid:3702)]

 Score = 1091 (389.1 bits), Expect = 1.8e-110, P = 1.8e-110
 Identities = 208/258 (80%), Positives = 232/258 (89%)

Query:     1 MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDAL 60
             M+++EE  VSTLL+N  N+FDP+ A+STPLYQTATFKQPSA ENGPYDYTRSGNPTRDAL
Sbjct:    79 MNIKEEASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDAL 138

Query:    61 ESXXXXXXXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
             ES            CFTSGMAAL+AVTHL+  GEEIVAGDD+YGG+DRLLS+V P++GVV
Sbjct:   139 ESLLAKLDKADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVV 198

Query:   121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS 180
             VKRVNT  LDEVA+AIGP TKLVW+ESPTNPRQQI DIRKI+EMAHA GAL+LVDNSIMS
Sbjct:   199 VKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMS 258

Query:   181 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC 240
             PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDC
Sbjct:   259 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDC 318

Query:   241 WICLRGVKTMALRVEKQQ 258
             W+CLRG+KTMALR+EKQQ
Sbjct:   319 WLCLRGIKTMALRIEKQQ 336

GO:0003824 "catalytic activity" evidence=IEA

GO:0004121 "cystathionine beta-lyase activity" evidence=IEA;IMP

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;ISS;IDA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0071266 "'de novo' L-methionine biosynthetic process" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0019279 "L-methionine biosynthetic process from L-homoserine via cystathionine" evidence=TAS

CGD|CAL0004561 orf19.2092 [Candida albicans (taxid:5476)]

 Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
 Identities = 123/261 (47%), Positives = 176/261 (67%)

Query:     1 MSVEEEPGVST-LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDA 59
             MS ++   + T L++N S   D Y A   PLYQ+ATFKQPS +  G YDYTRSGNPTR  
Sbjct:     1 MSPKKSYSLETELVLNKSG--DQYNASVPPLYQSATFKQPSLSNMGEYDYTRSGNPTRTH 58

Query:    60 LESXXXXXXXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV 119
             L++              +SGM  L  +T LL  G+E++AGDDLYGGT RLL+ ++ K  +
Sbjct:    59 LQNHIAKIMKAEHAFAVSSGMGCLDVITRLLKPGDEVIAGDDLYGGTHRLLTYLSKKGDI 118

Query:   120 VVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAH-AHGALLLV-DNS 177
             V    +T + + + S I   TK++++ESPTNP  ++ D++ IA+ AH A+  +++V DN+
Sbjct:   119 VAHHYDTTNTELIKSKINNKTKMIFLESPTNPLIKVVDVKSIADHAHKANRDIVVVFDNT 178

Query:   178 IMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP 237
             +MSPVL  PL+LG DI   SATK++ GH D+MAGV+A +   LA++LY++ N+ G GL+P
Sbjct:   179 MMSPVLMTPLDLGVDIQYESATKYLNGHHDIMAGVIATRSSSLAEQLYYIINSTGCGLSP 238

Query:   238 FDCWICLRGVKTMALRVEKQQ 258
             FDCW+  RG+KT+A+RVEKQQ
Sbjct:   239 FDCWLLSRGLKTLAIRVEKQQ 259

GO:0005777 "peroxisome" evidence=IEA

GO:0019346 "transsulfuration" evidence=IEA

GO:0009086 "methionine biosynthetic process" evidence=IEA

GO:0004121 "cystathionine beta-lyase activity" evidence=IEA

ASPGD|ASPL0000069608 metG [Emericella nidulans (taxid:162425)]

 Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
 Identities = 122/252 (48%), Positives = 167/252 (66%)

Query:     9 VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESXXXXXX 68
             ++T L+ ++   D Y A S P+YQ+ATFKQ S    G YDYTRSGNPTR  LE       
Sbjct:    38 IATELV-YTESNDQYNASSVPIYQSATFKQSSHEGGGEYDYTRSGNPTRTHLERHLAKIM 96

Query:    69 XXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCD 128
                     +SGMAAL  +T LL  G+E+V GDDLYGGT+RLL  ++   G++V  V+T +
Sbjct:    97 SAQRALVVSSGMAALDVITRLLRPGDEVVTGDDLYGGTNRLLKYLSTNGGIIVHHVDTTN 156

Query:   129 LDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAH-AH-GALLLVDNSIMSPVLSRP 186
              D+V   +   T +V +E+PTNP  +I DI  IA  +H A+   L++VDN++MSP+L  P
Sbjct:   157 PDKVKEVLTDKTAMVLLETPTNPLIKIVDIPTIAAASHEANPNCLVIVDNTMMSPLLLSP 216

Query:   187 LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRG 246
             LELGAD+V  S TK+++GH DVMAGV+AV    L + LYF  NA G GL+PFD W+ +RG
Sbjct:   217 LELGADVVYESGTKYLSGHHDVMAGVIAVNDPALGERLYFPINASGCGLSPFDSWLLMRG 276

Query:   247 VKTMALRVEKQQ 258
             VKT+ +R+++QQ
Sbjct:   277 VKTLKVRMDQQQ 288

GO:0004121 "cystathionine beta-lyase activity" evidence=RCA;IMP;IDA

GO:0006555 "methionine metabolic process" evidence=RCA

GO:0071266 "'de novo' L-methionine biosynthetic process" evidence=IMP

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0019346 "transsulfuration" evidence=IEA

UNIPROTKB|G4MSN2 MGG_07074 "Cystathionine beta-lyase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 116/241 (48%), Positives = 161/241 (66%)

Query:    21 DPYGALSTPLYQTATFKQPSATE-NGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSG 79
             D YGA S P+YQ+ATFKQ SA   N  YDYTRSGNPTR  LE                SG
Sbjct:    56 DQYGASSIPIYQSATFKQSSAAGGNSEYDYTRSGNPTRTHLERHMAKIMNANRALAVGSG 115

Query:    80 MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 139
             M AL  +T LL  G+E++ GDDLYGGT+RLL+ ++   G++V  ++T D+D VA+ +   
Sbjct:   116 MGALDVITRLLRPGDEVITGDDLYGGTNRLLTYLSANQGIIVHHIDTTDIDRVAATVSDK 175

Query:   140 TKLVWVESPTNPRQQICDIRKIAEMAHAHG--ALLLVDNSIMSPVLSRPLELGADIVMHS 197
             T +V +E+PTNP  +I D+  IA  AH     AL++VDN+++SP+L  PL+LGADIV  S
Sbjct:   176 TAMVLLETPTNPLIKIVDVATIARAAHDRNSKALVVVDNTMLSPMLCNPLDLGADIVYES 235

Query:   198 ATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQ 257
              TK+++GH D+M+G++A     LA  +YF  NA G GL+P D ++ +RG+KT+A+R+EKQ
Sbjct:   236 GTKYLSGHHDIMSGIVACNDAALADRMYFTVNATGCGLSPNDSFLLMRGIKTLAVRMEKQ 295

Query:   258 Q 258
             Q
Sbjct:   296 Q 296

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

POMBASE|SPCC11E10.01 SPCC11E10.01 "cystathionine beta-lyase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 118/252 (46%), Positives = 160/252 (63%)

Query:     9 VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESXXXXXX 68
             V T L++     D Y A S P+YQ+ATFKQP     G +DYTRSGNPTR  L+       
Sbjct:     9 VDTELVHVEGNEDQYHASSVPIYQSATFKQPCLEHMGKFDYTRSGNPTRSVLQVHLAKLM 68

Query:    69 XXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCD 128
                     ++GM+AL  +     +   +VAG DLYGG+DRLLS    + G  V  V+T D
Sbjct:    69 KAKHAFVTSNGMSALDMILRCCKSNSHVVAGHDLYGGSDRLLSFNQRQYGFKVDNVDTSD 128

Query:   129 LDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAH--AHGALLLVDNSIMSPVLSRP 186
             L    +A+ P T LV +ESPTNPR  ICDIR I ++    A  ALL++DN+++SPVL  P
Sbjct:   129 LAAFEAALRPDTNLVLIESPTNPRISICDIRAIVKITRSKAKDALLVMDNTMLSPVLCNP 188

Query:   187 LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRG 246
             L+ G DIV  SATK+++GH D+M GV+A K + +AK ++F  NA G+ +APF+C++ LRG
Sbjct:   189 LDFGYDIVYESATKYLSGHHDLMGGVIATKSDEIAKSVFFNINAMGAAMAPFECFLLLRG 248

Query:   247 VKTMALRVEKQQ 258
             +KTM LRVE+ Q
Sbjct:   249 IKTMGLRVERAQ 260

GO:0004121 "cystathionine beta-lyase activity" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0005777 "peroxisome" evidence=ISS

GO:0019279 "L-methionine biosynthetic process from L-homoserine via cystathionine" evidence=IC

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

TIGR_CMR|BA_4481 BA_4481 "cystathionine beta-lyase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
 Identities = 111/248 (44%), Positives = 163/248 (65%)

Query:     9 VSTLLMNFSNEFDPY-GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESXXXXX 67
             + TLL++   + DP  GA++ P+Y T+TF Q      G YDY+RSGNPTR+ALE      
Sbjct:     5 IDTLLLHNQYKHDPQTGAVNVPIYNTSTFHQFDVDTFGKYDYSRSGNPTREALEDIIALL 64

Query:    68 XXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC 127
                     F SG+AA++    LL  G+ ++  +D+YGGT R+++ V  + GV    V+  
Sbjct:    65 EGGTKGFAFASGIAAISTAFLLLSQGDHVLISEDVYGGTYRIITEVLSRYGVSHTFVDMT 124

Query:   128 DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPL 187
             +L+E+   I   TKL +VE+P+NP  ++ DIR ++ +A + GAL  VDN+ ++P+  +PL
Sbjct:   125 NLEEIKQNIKQNTKLFYVETPSNPLLKVTDIRAVSTLAKSIGALTFVDNTFLTPLFQKPL 184

Query:   188 ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV 247
             +LGAD+V+HSATKFIAGHSDV AG+  VK   LA++L FLQNA G+ L P DC + LRG+
Sbjct:   185 DLGADVVLHSATKFIAGHSDVTAGLAVVKDAELAQKLGFLQNAFGAILGPQDCSLVLRGL 244

Query:   248 KTMALRVE 255
             KT+ +R+E
Sbjct:   245 KTLHVRLE 252

GO:0004121 "cystathionine beta-lyase activity" evidence=ISS

GO:0009086 "methionine biosynthetic process" evidence=ISS

DICTYBASE|DDB_G0269122 cysA "cystathionine gamma-lyase" [Dictyostelium discoideum (taxid:44689)]

 Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
 Identities = 107/236 (45%), Positives = 151/236 (63%)

Query:    24 GALSTPLYQTATFKQPS-ATENGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAA 82
             GA+  P+  + TF QPS    +  YDY+RSGNPTR A E              F SG+A 
Sbjct:    25 GAVIVPISLSTTFLQPSPGVLHSEYDYSRSGNPTRKAFEECIAACENAKYALSFASGLAT 84

Query:    83 LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKL 142
             L  +THLL +G+E+++ DD+YGGT R  +RV     +    V+   LD++ +A    T+L
Sbjct:    85 LTTITHLLKSGDEVISIDDVYGGTRRYFTRVAANFDLKFSFVDLSTLDDLKNAFTDKTRL 144

Query:   143 VWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFI 202
             VW+E+PTNP  ++ DI+ +A+  H+ GA L+VDN+ MSP    PL+LGADIVMHS TK+I
Sbjct:   145 VWIETPTNPLLKVADIKAVADYVHSRGATLVVDNTFMSPYFQNPLDLGADIVMHSVTKYI 204

Query:   203 AGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ 258
              GHSD + GVLA   + L  +L FLQN+ G+  +PFDC++ LRG+KT+ +R+E  Q
Sbjct:   205 NGHSDCVMGVLATNNDELYAKLKFLQNSIGAVPSPFDCFLALRGLKTLHVRMEAHQ 260

GO:0005615 "extracellular space" evidence=IDA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0080146 "L-cysteine desulfhydrase activity" evidence=IEA

GO:0044540 "L-cystine L-cysteine-lyase (deaminating)" evidence=IEA

GO:0004123 "cystathionine gamma-lyase activity" evidence=IEA;ISS

GO:0006534 "cysteine metabolic process" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0019344 "cysteine biosynthetic process" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q81LL6 BAS4268 "Cys/Met metabolism PLP-dependent enzyme" [Bacillus anthracis (taxid:1392)]

 Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
 Identities = 102/235 (43%), Positives = 160/235 (68%)

Query:    24 GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAAL 83
             G+++ P+YQT+T+KQ +  ++  Y+Y+R+GNPTR ALE              F SGMAA+
Sbjct:    19 GSVNVPIYQTSTYKQEAVGKHQGYEYSRTGNPTRAALEEMIAVLENGHAGFAFGSGMAAI 78

Query:    84 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLV 143
              A   L   G+ ++  DD+YGGT R++++V  + G+    V+T +L+EV  AI P TK +
Sbjct:    79 TATIMLFSKGDHVILTDDVYGGTYRVITKVLNRFGIEHTFVDTTNLEEVEEAIRPNTKAI 138

Query:   144 WVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA 203
             +VE+PTNP  +I DI+KI+ +A   G L ++DN+ M+P    P+ LGADIV+HSATK++ 
Sbjct:   139 YVETPTNPLLKITDIKKISTLAKEKGLLTIIDNTFMTPYWQSPISLGADIVLHSATKYLG 198

Query:   204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ 258
             GHSDV+AG++ V   +LA++L+F+QN+ G  L P D ++ LRG+KT+ +R+E+ +
Sbjct:   199 GHSDVVAGLVVVNSPQLAEDLHFVQNSTGGILGPQDSFLLLRGLKTLGIRMEEHE 253

GO:0004121 "cystathionine beta-lyase activity" evidence=ISS

GO:0009086 "methionine biosynthetic process" evidence=ISS

TIGR_CMR|BA_4600 BA_4600 "cystathionine beta-lyase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
 Identities = 102/235 (43%), Positives = 160/235 (68%)

Query:    24 GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAAL 83
             G+++ P+YQT+T+KQ +  ++  Y+Y+R+GNPTR ALE              F SGMAA+
Sbjct:    19 GSVNVPIYQTSTYKQEAVGKHQGYEYSRTGNPTRAALEEMIAVLENGHAGFAFGSGMAAI 78

Query:    84 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLV 143
              A   L   G+ ++  DD+YGGT R++++V  + G+    V+T +L+EV  AI P TK +
Sbjct:    79 TATIMLFSKGDHVILTDDVYGGTYRVITKVLNRFGIEHTFVDTTNLEEVEEAIRPNTKAI 138

Query:   144 WVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA 203
             +VE+PTNP  +I DI+KI+ +A   G L ++DN+ M+P    P+ LGADIV+HSATK++ 
Sbjct:   139 YVETPTNPLLKITDIKKISTLAKEKGLLTIIDNTFMTPYWQSPISLGADIVLHSATKYLG 198

Query:   204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ 258
             GHSDV+AG++ V   +LA++L+F+QN+ G  L P D ++ LRG+KT+ +R+E+ +
Sbjct:   199 GHSDVVAGLVVVNSPQLAEDLHFVQNSTGGILGPQDSFLLLRGLKTLGIRMEEHE 253

GO:0004121 "cystathionine beta-lyase activity" evidence=ISS

GO:0009086 "methionine biosynthetic process" evidence=ISS

TIGR_CMR|GSU_0945 GSU_0945 "cystathionine beta-lyase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
 Identities = 106/249 (42%), Positives = 155/249 (62%)

Query:    11 TLLMNFSNEFDPY-GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESXXXXXXX 69
             T +++   E DP  GALS P+YQT+T++Q S    G YDY RS NPTR+ALE        
Sbjct:     5 TRIIHTGREIDPTTGALSVPIYQTSTYRQESVDHFGKYDYARSDNPTREALEETVAQLEN 64

Query:    70 XXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDL 129
                   F SGMAA+++   L   G+ +V  +D+YGGT R L+++  + GV    V+  D 
Sbjct:    65 GTRGFAFASGMAAISSTLLLFSPGDHLVVCEDVYGGTFRALTQLFSRLGVESTFVDATDT 124

Query:   130 DEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLEL 189
               + +A  P TK +++E+P+NP  +I D+   A +A   GA+ LVDN+ M+P L RPL+L
Sbjct:   125 AAIEAAFRPNTKGLYLETPSNPLMKITDLAAAARLARERGAITLVDNTFMTPYLQRPLDL 184

Query:   190 GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT 249
             G D+V+HS TKF+ GHSDV+ G   V+   L + + F+QNA G+ L P D W+ LRG+KT
Sbjct:   185 GCDVVLHSGTKFLNGHSDVVCGFAVVRDPELGQRIRFIQNAFGAILGPQDSWLVLRGIKT 244

Query:   250 MALRVEKQQ 258
             + +R+E+ Q
Sbjct:   245 LRVRMEESQ 253

GO:0004121 "cystathionine beta-lyase activity" evidence=ISS

GO:0009086 "methionine biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P53780	METC_ARATH	4, ., 4, ., 1, ., 8	0.8488	0.9735	0.5560	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.XVI.1340.1	annotation not avaliable (462 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.2485.1.1	Predicted protein (809 aa)	•					•	•		0.679
	fgenesh4_pg.C_scaffold_66000196	homoserine kinase (EC-2.7.1.39) (366 aa)	•					•	•		0.622
	gw1.130.69.1	N-acetyl-gamma-glutamyl-phosphate reductase (EC-1.2.1.38) (352 aa)	•						•		0.554
	gw1.7135.1.1	hypothetical protein (173 aa)	•					•	•		0.534
	eugene3.121520001	Predicted protein (251 aa)	•						•		0.493
	gw1.XII.1858.1	anthranilate phosphoribosyltransferase (EC-2.4.2.18) (334 aa)							•		0.477
	gw1.V.3049.1	2-isopropylmalate synthase (EC-2.3.3.13) (545 aa)							•		0.468
	estExt_fgenesh4_pg.C_280257	threonine deaminase (EC-4.3.1.19) (543 aa)	•						•		0.465
	eugene3.134660001	Predicted protein (264 aa)							•		0.461
	DHQS6	SubName- Full=Putative uncharacterized protein; (375 aa)							•		0.455

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	265
PLN02509	464	PLN02509, PLN02509, cystathionine beta-lyase	0.0
TIGR01329	378	TIGR01329, cysta_beta_ly_E, cystathionine beta-lya	1e-152
pfam01053	382	pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP	1e-124
cd00614	369	cd00614, CGS_like, CGS_like: Cystathionine gamma-s	1e-117
COG0626	396	COG0626, MetC, Cystathionine beta-lyases/cystathio	1e-104
PRK08064	390	PRK08064, PRK08064, cystathionine beta-lyase; Prov	7e-93
PRK07811	388	PRK07811, PRK07811, cystathionine gamma-synthase;	3e-92
PRK08247	366	PRK08247, PRK08247, cystathionine gamma-synthase;	5e-92
PRK07671	377	PRK07671, PRK07671, cystathionine beta-lyase; Prov	2e-90
PRK06176	380	PRK06176, PRK06176, cystathionine gamma-synthase/c	6e-82
PRK07269	364	PRK07269, PRK07269, cystathionine gamma-synthase;	5e-68
TIGR02080	382	TIGR02080, O_succ_thio_ly, O-succinylhomoserine (t	2e-67
PRK06234	400	PRK06234, PRK06234, methionine gamma-lyase; Provis	4e-66
PRK07503	403	PRK07503, PRK07503, methionine gamma-lyase; Provis	3e-65
COG2873	426	COG2873, MET17, O-acetylhomoserine sulfhydrylase [	1e-64
PRK08574	385	PRK08574, PRK08574, cystathionine gamma-synthase;	1e-64
TIGR01328	391	TIGR01328, met_gam_lyase, methionine gamma-lyase	3e-64
PRK08133	390	PRK08133, PRK08133, O-succinylhomoserine sulfhydry	4e-64
PRK08249	398	PRK08249, PRK08249, cystathionine gamma-synthase;	7e-63
TIGR01325	381	TIGR01325, O_suc_HS_sulf, O-succinylhomoserine sul	7e-61
PRK06767	386	PRK06767, PRK06767, methionine gamma-lyase; Provis	4e-59
PRK08861	388	PRK08861, PRK08861, cystathionine gamma-synthase;	2e-57
PRK08045	386	PRK08045, PRK08045, cystathionine gamma-synthase;	2e-56
TIGR01326	418	TIGR01326, OAH_OAS_sulfhy, OAH/OAS sulfhydrylase	2e-56
PRK05968	389	PRK05968, PRK05968, hypothetical protein; Provisio	7e-55
PRK07582	366	PRK07582, PRK07582, cystathionine gamma-lyase; Val	7e-55
PRK06434	384	PRK06434, PRK06434, cystathionine gamma-lyase; Val	7e-54
PRK08776	405	PRK08776, PRK08776, cystathionine gamma-synthase;	1e-53
PRK08134	433	PRK08134, PRK08134, O-acetylhomoserine aminocarbox	3e-52
PRK08248	431	PRK08248, PRK08248, O-acetylhomoserine aminocarbox	1e-50
PRK07504	398	PRK07504, PRK07504, O-succinylhomoserine sulfhydry	1e-50
PRK07812	436	PRK07812, PRK07812, O-acetylhomoserine aminocarbox	5e-49
PRK06460	376	PRK06460, PRK06460, hypothetical protein; Provisio	4e-47
PRK05994	427	PRK05994, PRK05994, O-acetylhomoserine aminocarbox	9e-46
PRK07810	403	PRK07810, PRK07810, O-succinylhomoserine sulfhydry	2e-45
PRK06084	425	PRK06084, PRK06084, O-acetylhomoserine aminocarbox	1e-42
PRK05939	397	PRK05939, PRK05939, hypothetical protein; Provisio	3e-42
PRK07049	427	PRK07049, PRK07049, methionine gamma-lyase; Valida	9e-41
PRK05613	437	PRK05613, PRK05613, O-acetylhomoserine aminocarbox	1e-40
PLN02242	418	PLN02242, PLN02242, methionine gamma-lyase	4e-39
PRK05967	395	PRK05967, PRK05967, cystathionine beta-lyase; Prov	4e-37
TIGR01324	377	TIGR01324, cysta_beta_ly_B, cystathionine beta-lya	3e-35
PRK07050	394	PRK07050, PRK07050, cystathionine beta-lyase; Prov	7e-31
PRK09028	394	PRK09028, PRK09028, cystathionine beta-lyase; Prov	4e-28
PRK06702	432	PRK06702, PRK06702, O-acetylhomoserine aminocarbox	4e-27
PRK08114	395	PRK08114, PRK08114, cystathionine beta-lyase; Prov	2e-16
COG0520	405	COG0520, csdA, Selenocysteine lyase/Cysteine desul	8e-13
cd01494	170	cd01494, AAT_I, Aspartate aminotransferase (AAT) s	3e-10
TIGR01976	397	TIGR01976, am_tr_V_VC1184, cysteine desulfurase fa	3e-10
cd06454	349	cd06454, KBL_like, KBL_like; this family belongs t	3e-09
PRK05958	385	PRK05958, PRK05958, 8-amino-7-oxononanoate synthas	4e-09
pfam00266	370	pfam00266, Aminotran_5, Aminotransferase class-V	1e-08
COG0156	388	COG0156, BioF, 7-keto-8-aminopelargonate synthetas	7e-08
cd06453	373	cd06453, SufS_like, Cysteine desulfurase (SufS)-li	8e-08
cd00615	294	cd00615, Orn_deC_like, Ornithine decarboxylase fam	4e-07
PRK00451	447	PRK00451, PRK00451, glycine dehydrogenase subunit	4e-07
COG0403	450	COG0403, GcvP, Glycine cleavage system protein P (	2e-06
TIGR00858	360	TIGR00858, bioF, 8-amino-7-oxononanoate synthase	4e-06
PLN02855	424	PLN02855, PLN02855, Bifunctional selenocysteine ly	6e-06
pfam00155	357	pfam00155, Aminotran_1_2, Aminotransferase class I	1e-05
COG1921	395	COG1921, SelA, Selenocysteine synthase [seryl-tRNA	3e-05
COG1982	557	COG1982, LdcC, Arginine/lysine/ornithine decarboxy	7e-05
PRK04366	481	PRK04366, PRK04366, glycine dehydrogenase subunit	8e-05
PRK06108	382	PRK06108, PRK06108, aspartate aminotransferase; Pr	8e-05
PRK07777	387	PRK07777, PRK07777, aminotransferase; Validated	1e-04
cd00613	398	cd00613, GDC-P, Glycine cleavage system P-protein,	1e-04
TIGR01825	385	TIGR01825, gly_Cac_T_rel, pyridoxal phosphate-depe	1e-04
pfam01212	288	pfam01212, Beta_elim_lyase, Beta-eliminating lyase	3e-04
PRK05367	954	PRK05367, PRK05367, glycine dehydrogenase; Provisi	6e-04
pfam02347	429	pfam02347, GDC-P, Glycine cleavage system P-protei	6e-04
COG1003	496	COG1003, GcvP, Glycine cleavage system protein P (	6e-04
PRK09082	386	PRK09082, PRK09082, methionine aminotransferase; V	7e-04
COG0436	393	COG0436, COG0436, Aspartate/tyrosine/aromatic amin	8e-04
TIGR01979	403	TIGR01979, sufS, cysteine desulfurases, SufSfamily	0.003
COG0075	383	COG0075, COG0075, Serine-pyruvate aminotransferase	0.003
TIGR01437	363	TIGR01437, selA_rel, uncharacterized pyridoxal pho	0.003
TIGR03588	380	TIGR03588, PseC, UDP-4-keto-6-deoxy-N-acetylglucos	0.003
PRK02731	367	PRK02731, PRK02731, histidinol-phosphate aminotran	0.003
TIGR01821	402	TIGR01821, 5aminolev_synth, 5-aminolevulinic acid	0.004
PRK01533	366	PRK01533, PRK01533, histidinol-phosphate aminotran	0.004
cd06452	361	cd06452, SepCysS, Sep-tRNA:Cys-tRNA synthase	0.004

>gnl|CDD|178125 PLN02509, PLN02509, cystathionine beta-lyase

 Score =  521 bits (1342), Expect = 0.0
 Identities = 220/258 (85%), Positives = 244/258 (94%)

Query: 1   MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDAL 60
           M+++EE  VSTLL+N  N+FDP+ A+STPLYQTATFKQPSA ENGPYDYTRSGNPTRDAL
Sbjct: 79  MNIKEEASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDAL 138

Query: 61  ESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
           ESLLAKLDKADRA CFTSGMAAL+AVTHL+  GEEIVAGDD+YGG+DRLLS+V P++GVV
Sbjct: 139 ESLLAKLDKADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVV 198

Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS 180
           VKRVNT +LDEVA+AIGP TKLVW+ESPTNPRQQI DIRKIAEMAHA GAL+LVDNSIMS
Sbjct: 199 VKRVNTTNLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMS 258

Query: 181 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC 240
           PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDC
Sbjct: 259 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDC 318

Query: 241 WICLRGVKTMALRVEKQQ 258
           W+CLRG+KTMALR+EKQQ
Sbjct: 319 WLCLRGIKTMALRIEKQQ 336

Length = 464

>gnl|CDD|233359 TIGR01329, cysta_beta_ly_E, cystathionine beta-lyase, eukaryotic

 Score =  428 bits (1101), Expect = e-152
 Identities = 183/250 (73%), Positives = 217/250 (86%)

Query: 9   VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD 68
           +STLL+N  N+ DPY A S P+YQTATFKQP A ENGPYDYTRSGNPTR ALESLLAKLD
Sbjct: 1   LSTLLVNTDNKNDPYDASSMPIYQTATFKQPLAIENGPYDYTRSGNPTRTALESLLAKLD 60

Query: 69  KADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCD 128
           KADRA  F+SGMAAL  +T LL  G+EI+AGDDLYGGTDRLL++V P++GVVV  V+T D
Sbjct: 61  KADRAFAFSSGMAALDVITRLLNNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDTTD 120

Query: 129 LDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLE 188
           LD+V +A+GP TKLV +ESPTNP Q+I DIRKI+EMAHA  AL++VDN++MSP+L  PLE
Sbjct: 121 LDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPLLCNPLE 180

Query: 189 LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK 248
           LGADIV HSATKF+AGHSDVMAGVLAVKGE +AK++YFLQN+ GSGLAPFDCW+ LRG+K
Sbjct: 181 LGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGSGLAPFDCWLLLRGIK 240

Query: 249 TMALRVEKQQ 258
           T+A+R+EKQQ
Sbjct: 241 TLAIRIEKQQ 250

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. Length = 378

>gnl|CDD|216267 pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent enzyme

 Score =  357 bits (918), Expect = e-124
 Identities = 135/257 (52%), Positives = 180/257 (70%), Gaps = 8/257 (3%)

Query: 10  STLLMNFSNEFDP-YGALSTPLYQTATFKQPSAT-----ENGPYDYTRSGNPTRDALESL 63
           +TL ++     D   GA+  P+Y T+T+   +       E+G YDY+RSGNPTRDALE  
Sbjct: 1   ATLAVHAGQRPDRQTGAVVVPIYLTSTYVFDTVEALFAGEHGGYDYSRSGNPTRDALEER 60

Query: 64  LAKLDKADRALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVK 122
           +A L+  + AL F+SGMAA+ AA+  LL  G+ +VA DDLYGGT RL  +V P+ G+ V 
Sbjct: 61  IAALEGGEAALAFSSGMAAIFAALLALLKAGDHVVATDDLYGGTYRLFEKVLPRFGIEVT 120

Query: 123 RVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV 182
            V+  DLD + +AI P TK V++E+PTNP  ++ DI  IA++A  HGAL++VDN+  SP 
Sbjct: 121 FVDPSDLDALEAAIKPNTKAVFLETPTNPLLKVVDIEAIAKIAKKHGALVVVDNTFASPY 180

Query: 183 LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG-ERLAKELYFLQNAEGSGLAPFDCW 241
           L RPLELGADIV+HSATK+I GHSDV+ GV+ V G E LAK L FLQNA G+ L+PFD W
Sbjct: 181 LQRPLELGADIVVHSATKYIGGHSDVVGGVVVVNGREELAKRLRFLQNATGAVLSPFDAW 240

Query: 242 ICLRGVKTMALRVEKQQ 258
           + LRG+KT+ LR+E+ Q
Sbjct: 241 LLLRGLKTLGLRMERHQ 257

This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor. Length = 382

>gnl|CDD|99738 cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

 Score =  338 bits (870), Expect = e-117
 Identities = 132/244 (54%), Positives = 170/244 (69%), Gaps = 9/244 (3%)

Query: 24  GALSTPLYQTATFKQPS--------ATENGPYDYTRSGNPTRDALESLLAKLDKADRALC 75
           GA++ P+YQT+TF  PS        A   G Y Y+R GNPT DALE  LA L+  + AL 
Sbjct: 1   GAVAPPIYQTSTFVFPSPAEAADLFALREGGYIYSRIGNPTVDALEKKLAALEGGEAALA 60

Query: 76  FTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVAS 134
           F+SGMAA++ V   LL  G+ +VA DDLYGGT RL  R+ PK G+ V  V+  D + + +
Sbjct: 61  FSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKLGIEVTFVDPDDPEALEA 120

Query: 135 AIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIV 194
           AI P TKLV+VESPTNP  ++ DI  IAE+AH HGALL+VDN+  +P L RPLELGADIV
Sbjct: 121 AIKPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYLQRPLELGADIV 180

Query: 195 MHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRV 254
           +HSATK+I GHSDV+AGV+   GE L + L FL+ A G+ L+PFD W+ LRG+KT+ LR+
Sbjct: 181 VHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLKTLPLRM 240

Query: 255 EKQQ 258
           E+  
Sbjct: 241 ERHS 244

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. Length = 369

>gnl|CDD|223699 COG0626, MetC, Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

 Score =  308 bits (791), Expect = e-104
 Identities = 122/266 (45%), Positives = 172/266 (64%), Gaps = 12/266 (4%)

Query: 5   EEPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSA--------TENGPYDYTRSGNP 55
            +  ++T L++     D   GA++ P+Y T+TF   SA         E G YDY+R+GNP
Sbjct: 4   AKLSLTTRLVHAGRRPDDLTGAVNPPIYLTSTFVFDSAGEGLDAFAGEEGGYDYSRTGNP 63

Query: 56  TRDALESLLAKLDKADRALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVT 114
           TRDALE  LA+L+  + A  F+SGMAA+  A+  LL  G+ ++  DDLYGGT RL  ++ 
Sbjct: 64  TRDALEEALAELEGGEDAFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKIL 123

Query: 115 PKTGV-VVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLL 173
            K GV V       D    A+   P TKLV++E+P+NP  ++ DI  IA +A A+GAL++
Sbjct: 124 QKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVV 183

Query: 174 VDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE-G 232
           VDN+  +PVL RPLELGADIV+HSATK++ GHSDV+ GV+    E L + L+F Q A  G
Sbjct: 184 VDNTFATPVLQRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTG 243

Query: 233 SGLAPFDCWICLRGVKTMALRVEKQQ 258
           + L+PFD W+ LRG++T+ALR+E+  
Sbjct: 244 AVLSPFDAWLLLRGLRTLALRMERHN 269

Length = 396

>gnl|CDD|236146 PRK08064, PRK08064, cystathionine beta-lyase; Provisional

 Score =  278 bits (713), Expect = 7e-93
 Identities = 115/254 (45%), Positives = 173/254 (68%), Gaps = 1/254 (0%)

Query: 4   EEEPGVSTLLMNFSNEFDPY-GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALES 62
                + TLL++   + D   GA++ P+Y  +TF Q      G YDY+RSGNPTR+ALE 
Sbjct: 2   AMSYSIDTLLLHNQYKHDKQTGAVNVPIYHASTFHQFDFDTFGKYDYSRSGNPTREALED 61

Query: 63  LLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVK 122
           ++A+L+   +   F SGMAA++    LL  G+ ++  +D+YGGT R+++ V  + G+   
Sbjct: 62  IIAELEGGTKGFAFASGMAAISTAFLLLSKGDHVLISEDVYGGTYRMITEVLSRFGIEHT 121

Query: 123 RVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV 182
            V+  +L+EVA  I P TKL +VE+P+NP  ++ DIR + ++A A G L  VDN+ ++P+
Sbjct: 122 FVDMTNLEEVAQNIKPNTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPL 181

Query: 183 LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI 242
           L +PL+LGAD+V+HSATKF+AGHSDV+AG+  VK E LA++LYFLQN+ G+ L   DCW+
Sbjct: 182 LQKPLDLGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVLGVQDCWL 241

Query: 243 CLRGVKTMALRVEK 256
            LRG+KT+ +R+E 
Sbjct: 242 VLRGLKTLHVRLEH 255

Length = 390

>gnl|CDD|236104 PRK07811, PRK07811, cystathionine gamma-synthase; Provisional

 Score =  276 bits (709), Expect = 3e-92
 Identities = 116/253 (45%), Positives = 159/253 (62%), Gaps = 5/253 (1%)

Query: 8   GVSTLLMNFSNEFDPY-GALSTPLYQTATFKQ--PSATENGPYDYTRSGNPTRDALESLL 64
           G +T  ++   E DP  GA++ P+Y ++TF Q        G Y+Y R+GNPTR ALE  L
Sbjct: 12  GFATRAIHAGYEPDPATGAVNPPIYASSTFAQDGVGGLRGG-YEYARTGNPTRTALEEQL 70

Query: 65  AKLDKADRALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKR 123
           A L+       F+SGMAA    +  +L  G+ IV  +D YGGT RL+ +V  + GV    
Sbjct: 71  AALEGGAYGRAFSSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTP 130

Query: 124 VNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL 183
           V+  DLD V +AI P TKL+WVE+PTNP   I DI  +AE+AH  GA ++VDN+  SP L
Sbjct: 131 VDLSDLDAVRAAITPRTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASPYL 190

Query: 184 SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC 243
            +PL LGAD+V+HS TK+I GHSDV+ G L    E L +   FLQN  G+   PFD ++ 
Sbjct: 191 QQPLALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVPGPFDAYLT 250

Query: 244 LRGVKTMALRVEK 256
           LRG+KT+A+R+++
Sbjct: 251 LRGLKTLAVRMDR 263

Length = 388

>gnl|CDD|181320 PRK08247, PRK08247, cystathionine gamma-synthase; Reviewed

 Score =  275 bits (706), Expect = 5e-92
 Identities = 110/251 (43%), Positives = 159/251 (63%), Gaps = 1/251 (0%)

Query: 9   VSTLLMNFSNEFDPY-GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKL 67
           + T L    N  D   G ++ P+Y +  ++     E+  +DY+R+GNPTR  LE  +A L
Sbjct: 5   IETKLAQIGNRSDERTGTVNPPVYFSTAYRHEGIGESTGFDYSRTGNPTRGVLEQAIADL 64

Query: 68  DKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC 127
           +  D+    +SGMAA+  V  L  +G+E++   DLYGGT RL      K  V    VNT 
Sbjct: 65  EGGDQGFACSSGMAAIQLVMSLFRSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNTA 124

Query: 128 DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPL 187
            L  +  AI P TK +++E+PTNP  Q  DI  IA++A  HG LL+VDN+  +PVL RPL
Sbjct: 125 SLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVLQRPL 184

Query: 188 ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV 247
           E GADIV+HSATK++ GH+DV+AG++  KG+ L + L + QNA G+ L+PFD W+ +RG+
Sbjct: 185 EEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIRGM 244

Query: 248 KTMALRVEKQQ 258
           KT+ALR+ + +
Sbjct: 245 KTLALRMRQHE 255

Length = 366

>gnl|CDD|181076 PRK07671, PRK07671, cystathionine beta-lyase; Provisional

 Score =  271 bits (696), Expect = 2e-90
 Identities = 109/235 (46%), Positives = 165/235 (70%)

Query: 24  GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL 83
           GA+S P+YQ +T+KQ +  ++  Y+Y+R+GNPTR ALE L+A L+       F SGMAA+
Sbjct: 19  GAVSVPIYQVSTYKQEAVGKHQGYEYSRTGNPTRAALEELIAVLEGGHAGFAFGSGMAAI 78

Query: 84  AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLV 143
            AV  L  +G+ ++  DD+YGGT R++++V  + G+    V+T +L+EV  AI P TK +
Sbjct: 79  TAVMMLFSSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDTSNLEEVEEAIRPNTKAI 138

Query: 144 WVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA 203
           +VE+PTNP  +I DI+KI+ +A   G L +VDN+ M+P    P+ LGADIV+HSATK++ 
Sbjct: 139 YVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTPYWQSPISLGADIVLHSATKYLG 198

Query: 204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ 258
           GHSDV+AG++ V    LA++L+F+QN+ G  L P D W+ LRG+KT+ +R+E+ +
Sbjct: 199 GHSDVVAGLVVVNSPELAEDLHFVQNSTGGILGPQDSWLLLRGLKTLGIRMEEHE 253

Length = 377

>gnl|CDD|180443 PRK06176, PRK06176, cystathionine gamma-synthase/cystathionine beta-lyase; Validated

 Score =  250 bits (640), Expect = 6e-82
 Identities = 107/235 (45%), Positives = 155/235 (65%)

Query: 24  GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL 83
           GA+S P+YQT+T++Q +      Y+Y+RSGNPTR ALE L+A L+   +   F SG+A +
Sbjct: 19  GAVSVPIYQTSTYRQDAIGRPKGYEYSRSGNPTRFALEELIADLEGGVKGFAFASGLAGI 78

Query: 84  AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLV 143
            AV  L  +G+ ++ GDD+YGGT RL  +V  K G+    ++T DL ++  AI P TK +
Sbjct: 79  HAVFSLFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTIIDTSDLSQIKKAIKPNTKAL 138

Query: 144 WVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA 203
           ++E+P+NP  +I D+ + A +A  HG L +VDN+  +P    PL LGADIV+HS TK++ 
Sbjct: 139 YLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQNPLLLGADIVVHSGTKYLG 198

Query: 204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ 258
           GHSDV+AG++    E LA+E+ F QNA G  L P D W+  RG+KT+ LR+E  Q
Sbjct: 199 GHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQRGIKTLGLRMEAHQ 253

Length = 380

>gnl|CDD|235983 PRK07269, PRK07269, cystathionine gamma-synthase; Reviewed

 Score =  214 bits (546), Expect = 5e-68
 Identities = 99/233 (42%), Positives = 155/233 (66%), Gaps = 2/233 (0%)

Query: 24  GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL 83
           GAL TPL+ + T++ P   ++  +DYTR+ NPTR  LE  LA ++ AD AL  +SGM+A+
Sbjct: 23  GALVTPLHFSTTYQHPEFGQSTGFDYTRTKNPTRAKLEETLAAIESADYALATSSGMSAI 82

Query: 84  AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLV 143
                +   G ++VA  DLYGG+ R  ++   +        NT   +E+ +AI   T +V
Sbjct: 83  VLAFSVFPVGSKVVAVRDLYGGSFRWFNQQEKEGRFHFTYANT--EEELIAAIEEDTDIV 140

Query: 144 WVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA 203
           ++E+PTNP     DI K+A++AHA GA ++VDN+  SP+  RP+ELGADIV+HSATK+++
Sbjct: 141 YIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIYQRPIELGADIVLHSATKYLS 200

Query: 204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEK 256
           GH+DV+AGV+      L ++L++  N  G+ L+PFD ++ +RG+KT++LR+E+
Sbjct: 201 GHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFDSYLLMRGLKTLSLRMER 253

Length = 364

>gnl|CDD|131135 TIGR02080, O_succ_thio_ly, O-succinylhomoserine (thiol)-lyase

 Score =  213 bits (544), Expect = 2e-67
 Identities = 99/237 (41%), Positives = 146/237 (61%), Gaps = 1/237 (0%)

Query: 23  YGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAA 82
           YG +  P+Y + T+      E   YDY+RSGNPTRD L+  LA+L+    A+   +GM+A
Sbjct: 19  YGCVVPPIYLSTTYNFTGFNEPRAYDYSRSGNPTRDLLQQALAELEGGAGAVVTNTGMSA 78

Query: 83  LAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTK 141
           +  V T LLG  + +VA  D YGGT RLL+ +  K    V  V+  D   + +A+    K
Sbjct: 79  IHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQKPK 138

Query: 142 LVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKF 201
           LV +E+P+NP  ++ DI KI  +A A GA+++VDN+ +SP L  PL LGAD+V+HS TK+
Sbjct: 139 LVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPALQNPLALGADLVLHSCTKY 198

Query: 202 IAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ 258
           + GHSDV+AG +  K  ++A+EL +  N  G     FD ++ LRG++T+  R+  QQ
Sbjct: 199 LNGHSDVIAGAVIAKDPQVAEELAWWANNLGVTGGAFDSYLTLRGLRTLVARMRLQQ 255

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine [Amino acid biosynthesis, Aspartate family]. Length = 382

>gnl|CDD|168478 PRK06234, PRK06234, methionine gamma-lyase; Provisional

 Score =  210 bits (537), Expect = 4e-66
 Identities = 97/247 (39%), Positives = 156/247 (63%), Gaps = 14/247 (5%)

Query: 23  YGALSTPLYQTATFKQPSATENGP--------YDYTRSGNPTRDALESLLAKLDKADRAL 74
           +G+L+TP+YQT+TF   SA + G         Y Y+R GNPT   +E+ LA L+  + A+
Sbjct: 24  FGSLATPIYQTSTFIFDSAEQGGRRFAGEESGYIYSRLGNPTSTEVENKLALLEGGEAAV 83

Query: 75  CFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVA 133
              SGM A+ +++   L  G+ +VA D LYG T  LL+    + GV V  V+T +L+EV 
Sbjct: 84  VAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVDTSNLEEVR 143

Query: 134 SAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH--GALLLVDNSIMSPVLSRPLELGA 191
           +A+   TK+V++E+P NP  ++ DI+ I+ +AH +    L+ VDN+  +P + RPL+LGA
Sbjct: 144 NALKANTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYIQRPLQLGA 203

Query: 192 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF--LQNAEGSGLAPFDCWICLRGVKT 249
           D+V+HSATK++ GH DV+AG   V  E    ++    +++  GS + PF+ ++ +RG+KT
Sbjct: 204 DVVVHSATKYLNGHGDVIAG-FVVGKEEFINQVKLFGIKDMTGSVIGPFEAFLIIRGMKT 262

Query: 250 MALRVEK 256
           + +R+EK
Sbjct: 263 LQIRMEK 269

Length = 400

>gnl|CDD|181005 PRK07503, PRK07503, methionine gamma-lyase; Provisional

 Score =  208 bits (531), Expect = 3e-65
 Identities = 101/251 (40%), Positives = 150/251 (59%), Gaps = 15/251 (5%)

Query: 20  FDP---YGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLD 68
           +DP    GAL  P+Y TATF  P+A         E   + Y+R  NPT   LE  +A L+
Sbjct: 19  YDPLDHGGALVPPVYLTATFAFPTAEYGAECFAGEEEGHFYSRISNPTLALLEQRMASLE 78

Query: 69  KADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC 127
             + A+   SGM A+ A    LL  G+E++    LYG T   L     + GV V+ V+  
Sbjct: 79  GGEAAVALASGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDLT 138

Query: 128 DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPL 187
           D   + +AI   T++V+ E+P NP  ++ DI  +AE+AH  GA ++VDN+  +P L RPL
Sbjct: 139 DPAALKAAISDKTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYLQRPL 198

Query: 188 ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE--LYFLQNAEGSGLAPFDCWICLR 245
           ELGAD+V+HSATK++ GH D+ AG L V G+ LA    L  L++  G+ ++PFD ++ +R
Sbjct: 199 ELGADLVVHSATKYLGGHGDITAG-LVVGGKALADRIRLEGLKDMTGAVMSPFDAFLLMR 257

Query: 246 GVKTMALRVEK 256
           G+KT+ALR+++
Sbjct: 258 GLKTLALRMDR 268

Length = 403

>gnl|CDD|225428 COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

 Score =  207 bits (528), Expect = 1e-64
 Identities = 97/294 (32%), Positives = 140/294 (47%), Gaps = 41/294 (13%)

Query: 4   EEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATE-------NGP-YDYTRSGNP 55
               G  TL ++   E    GA + P+YQT ++                P   YTR  NP
Sbjct: 3   SANWGFETLAVHAGQEDPTTGARAVPIYQTTSYVFDDTDHAAALFGLKEPGNIYTRIMNP 62

Query: 56  TRDALESLLAKLDKADRALCFTSGMAALAAVTH-LLGTGEEIVAGDDLYGGTDRLLSRVT 114
           T D LE  +A L+    AL   SG AA+      L G G+ IV+   LYGGT  L S   
Sbjct: 63  TTDVLEERIAALEGGVAALAVASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTL 122

Query: 115 PKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV 174
            + G+ V+ V+  D +   +AI   TK V+ E+  NP   + DI  IAE+AH HG  L+V
Sbjct: 123 KRLGIEVRFVDPDDPENFEAAIDENTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIV 182

Query: 175 DNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVL--------------------- 213
           DN+  +P L RP+E GADIV+HSATK+I GH   + GV+                     
Sbjct: 183 DNTFATPYLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTPD 242

Query: 214 ----AVKGERLAKELYFLQNAE-------GSGLAPFDCWICLRGVKTMALRVEK 256
                +          F+  A        G+ L+PF+ ++ L+G++T++LR+E+
Sbjct: 243 PSYHGLVYTETFGNAAFIIKARVQLLRDLGATLSPFNAFLLLQGLETLSLRMER 296

Length = 426

>gnl|CDD|236298 PRK08574, PRK08574, cystathionine gamma-synthase; Provisional

 Score =  206 bits (525), Expect = 1e-64
 Identities = 98/243 (40%), Positives = 145/243 (59%), Gaps = 8/243 (3%)

Query: 21  DPYGALSTPLYQTATFKQP---SATENG-PYDYTRSGNPTRDALESLLAKLDKADRALCF 76
           DPYG+L  P+Y TA F+Q      ++ G    Y+R  NPT   LE  LAKL+    AL F
Sbjct: 15  DPYGSLQPPIYLTALFRQEGEAYPSDRGFDLKYSREENPTLRPLEEALAKLEGGVDALAF 74

Query: 77  TSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASA 135
            SGMAA++ +   LL  G+ +V   + YG T RLL  +  K GV V        +++  A
Sbjct: 75  NSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSLE-KFGVKVVLAYP-STEDIIEA 132

Query: 136 I-GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIV 194
           I    TKLV++E+ TNP  ++ D+ ++A+ A   GA+L+VDN+  +P+L RPL  GAD V
Sbjct: 133 IKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPLLYRPLRHGADFV 192

Query: 195 MHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRV 254
           +HS TK+IAGH+DV+ GV         +EL+  +   G+ + PF+ ++ LRG+KT+ +R 
Sbjct: 193 VHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIMQPFEAYLVLRGLKTLEVRF 252

Query: 255 EKQ 257
           E+Q
Sbjct: 253 ERQ 255

Length = 385

>gnl|CDD|130395 TIGR01328, met_gam_lyase, methionine gamma-lyase

 Score =  205 bits (522), Expect = 3e-64
 Identities = 93/247 (37%), Positives = 152/247 (61%), Gaps = 10/247 (4%)

Query: 21  DPYGALSTPLYQTATFKQPSATENGP--------YDYTRSGNPTRDALESLLAKLDKADR 72
           D +GAL+ P+YQT+TF   S  + G         Y Y+R GNPT   LE  +A L+  + 
Sbjct: 17  DQFGALTPPIYQTSTFVFDSCEQGGNRFAGQESGYIYSRLGNPTVSNLEGRIAFLEGTEA 76

Query: 73  ALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDE 131
           A+  +SGM A+AA +  +L  G+ +++ + LYG T  LL     K G+ V  +N    +E
Sbjct: 77  AVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKFGIQVDFINMAIPEE 136

Query: 132 VASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGA 191
           V + I   TK+V+ E+P NP  ++ D+ ++   AH+ G  ++VDN+  +P+L+ P+ LG 
Sbjct: 137 VKAHIKDNTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFATPMLTNPVALGV 196

Query: 192 DIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQNAEGSGLAPFDCWICLRGVKTM 250
           D+V+HSATK+I GH DV+AG++  K E L +  +  +++  GS ++PFD W+ LRG+KT+
Sbjct: 197 DVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKDMTGSVISPFDAWLILRGLKTL 256

Query: 251 ALRVEKQ 257
            +R+++ 
Sbjct: 257 NIRMKRH 263

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine [Energy metabolism, Amino acids and amines]. Length = 391

>gnl|CDD|181244 PRK08133, PRK08133, O-succinylhomoserine sulfhydrylase; Validated

 Score =  204 bits (522), Expect = 4e-64
 Identities = 94/245 (38%), Positives = 144/245 (58%), Gaps = 10/245 (4%)

Query: 22  PYGALSTPLYQTATFKQPSATENGP--------YDYTRSGNPTRDALESLLAKLDKADRA 73
           P+G  S  L+ T++F   SA E             Y+R  NPT    +  LA L+ A+  
Sbjct: 20  PFGEHSEALFLTSSFVFESAAEAAARFAGEEPGNIYSRFTNPTVTMFQERLAALEGAEAC 79

Query: 74  LCFTSGMAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEV 132
           +   SGMAA LA V  LL  G+ +V+   L+G T  L  ++  + G+    V+  DLD  
Sbjct: 80  VATASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDLTDLDAW 139

Query: 133 ASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGAD 192
            +A+ P TKL ++E+P+NP  ++ DI  +AE+AHA GALL+VDN   +P L +PL+LGAD
Sbjct: 140 RAAVRPNTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCTPALQQPLKLGAD 199

Query: 193 IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL 252
           +V+HSATK++ G   V+ G +    E + +   FL+ A G  L+PF+ W+ L+G++T++L
Sbjct: 200 VVIHSATKYLDGQGRVLGGAVVGSKELMEEVFGFLRTA-GPTLSPFNAWVFLKGLETLSL 258

Query: 253 RVEKQ 257
           R+E  
Sbjct: 259 RMEAH 263

Length = 390

>gnl|CDD|236202 PRK08249, PRK08249, cystathionine gamma-synthase; Provisional

 Score =  201 bits (514), Expect = 7e-63
 Identities = 88/249 (35%), Positives = 145/249 (58%), Gaps = 10/249 (4%)

Query: 19  EFDPYGALSTPLYQTATFK-------QPSATENGP-YDYTRSGNPTRDALESLLAKLDKA 70
           E+ PYGA   P+  +  +           A    P + Y+R+ NPT  A E  +  L+ A
Sbjct: 20  EYLPYGATQVPVVLSVAYGYDDIDEWYDVALGKKPGHIYSRNTNPTVQAFEEKVRILEGA 79

Query: 71  DRALCFTSGMAALAAVTH-LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDL 129
           + A  F++GMAA++   +  L  G+ +V+  D YGGT+++ +   P+ GV V    T D 
Sbjct: 80  EAATAFSTGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRMGVDVTLCETGDH 139

Query: 130 DEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLEL 189
           +++ + I     L+++E+PTNP  +I DI ++A  A   GAL++VDN+  +P+   PL L
Sbjct: 140 EQIEAEIAKGCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFATPINQNPLAL 199

Query: 190 GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT 249
           GAD+V+HSATKF++GH+D + GV     + L +++Y  +   G+ + P   ++ LRG+KT
Sbjct: 200 GADLVIHSATKFLSGHADALGGV-VCGSKELMEQVYHYREINGATMDPMSAYLILRGMKT 258

Query: 250 MALRVEKQQ 258
           + LRV +QQ
Sbjct: 259 LKLRVRQQQ 267

Length = 398

>gnl|CDD|188131 TIGR01325, O_suc_HS_sulf, O-succinylhomoserine sulfhydrylase

 Score =  196 bits (499), Expect = 7e-61
 Identities = 95/256 (37%), Positives = 146/256 (57%), Gaps = 9/256 (3%)

Query: 11  TLLMNFSNEFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALES 62
           TL +        +   +  LY T+ +   SA         E   + Y+R GNPT    E 
Sbjct: 2   TLAVRGGMLRSGFEETAEALYLTSGYVYDSAAVAAKRFAGELPGFVYSRYGNPTVSVFEE 61

Query: 63  LLAKLDKADRALCFTSGMAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVV 121
            LA L+ A+ A+   SGMAA  AA+  LLG G+ +VA   L+G    + S + P+ GV  
Sbjct: 62  RLALLEGAEAAVATASGMAAIFAALMALLGAGDHVVASRSLFGSCFVVCSEILPRFGVQT 121

Query: 122 KRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSP 181
             V+  DL    +A+ P TK V+VE+P+NP Q++ DI  +AE+AHA GA ++VDN   +P
Sbjct: 122 VFVDGTDLSAWEAALKPNTKAVFVETPSNPLQELVDIAAVAELAHAAGAKVVVDNVFATP 181

Query: 182 VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCW 241
           +L +PL+LGAD+V++SATK I G   V+ G +    E + + +  L    G  ++PF+ W
Sbjct: 182 LLQQPLKLGADVVVYSATKHIDGQGRVLGGAILGSEEYMDEPVQKLLRHTGPAMSPFNAW 241

Query: 242 ICLRGVKTMALRVEKQ 257
           + L+G++T+A+RV+ Q
Sbjct: 242 VLLKGLETLAIRVQHQ 257

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis [Amino acid biosynthesis, Aspartate family]. Length = 381

>gnl|CDD|180685 PRK06767, PRK06767, methionine gamma-lyase; Provisional

 Score =  191 bits (488), Expect = 4e-59
 Identities = 94/243 (38%), Positives = 145/243 (59%), Gaps = 9/243 (3%)

Query: 23  YGALSTPLYQTATFKQPSATENGP--------YDYTRSGNPTRDALESLLAKLDKADRAL 74
            G+L+ PL+QT+TF   +A +           Y Y+R GNPT    E  +A L+  + AL
Sbjct: 21  KGSLTPPLFQTSTFTFETAQQGEASFAGVDPSYIYSRLGNPTVKLFEERMAVLEGGEEAL 80

Query: 75  CFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVA 133
            F SGMAA++A     L  G+ I+  + LYG T   L  +  K  +     +     ++ 
Sbjct: 81  AFGSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFMITHSFCDMETEADIE 140

Query: 134 SAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADI 193
           + I P TKL++VE+P NP  ++ D++++  +A  +G L++VDN+  SP L RPLELG D 
Sbjct: 141 NKIRPNTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFCSPYLQRPLELGCDA 200

Query: 194 VMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALR 253
           V+HSATK+I GH DV+AGV   K   LA+++  ++   G  +APFD W+ LRG+KT+A+R
Sbjct: 201 VVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDIGGIMAPFDAWLLLRGLKTLAVR 260

Query: 254 VEK 256
           +++
Sbjct: 261 MDR 263

Length = 386

>gnl|CDD|181567 PRK08861, PRK08861, cystathionine gamma-synthase; Provisional

 Score =  187 bits (476), Expect = 2e-57
 Identities = 97/233 (41%), Positives = 142/233 (60%), Gaps = 1/233 (0%)

Query: 23  YGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAA 82
           Y A+  P+Y +  +  P+  E   YDYTRSGNP R  LE  L++L+    A+    G +A
Sbjct: 21  YHAVVPPIYLSTNYGFPAFGEVPKYDYTRSGNPNRGLLEQTLSELESGKGAVVTNCGTSA 80

Query: 83  LAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTK 141
           L   V+ LLG  + IVA  D YGGT RL +    K    V+ V+  D   + +A+    K
Sbjct: 81  LNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQSDAAALDAALAKKPK 140

Query: 142 LVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKF 201
           L+ +E+P+NP  ++ DI ++ + A A GAL+ VDN+ ++PVL +PLELGAD V+HS TK+
Sbjct: 141 LILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVLQKPLELGADFVIHSTTKY 200

Query: 202 IAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRV 254
           I GHSDV+ GVL  K +  A+EL +  N  G+   PFD ++ LRG++T+  R+
Sbjct: 201 INGHSDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSYMTLRGIRTLGARM 253

Length = 388

>gnl|CDD|169194 PRK08045, PRK08045, cystathionine gamma-synthase; Provisional

 Score =  185 bits (470), Expect = 2e-56
 Identities = 95/247 (38%), Positives = 144/247 (58%), Gaps = 11/247 (4%)

Query: 18  NEFDPYGALSTPLYQTAT-----FKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADR 72
           N+ + YG +  P++ ++T     F +P A     +DY+R GNPTRD ++  LA+L+    
Sbjct: 15  NDDEQYGCVVPPIHLSSTYNFTGFNEPRA-----HDYSRRGNPTRDVVQRALAELEGGAG 69

Query: 73  ALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDE 131
           A+   +GM+A+  V T  L  G+ +VA  D YGG+ RL   +  +    V  V+  D   
Sbjct: 70  AVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQA 129

Query: 132 VASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGA 191
           + +A+    KLV VESP+NP  ++ DI KI  +A   GA+ +VDN+ +SP L  PL LGA
Sbjct: 130 LRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPALQNPLALGA 189

Query: 192 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA 251
           D+V+HS TK++ GHSDV+AGV+  K   +  EL +  N  G     FD ++ LRG++T+ 
Sbjct: 190 DLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLV 249

Query: 252 LRVEKQQ 258
            R+E  Q
Sbjct: 250 PRMELAQ 256

Length = 386

>gnl|CDD|130393 TIGR01326, OAH_OAS_sulfhy, OAH/OAS sulfhydrylase

 Score =  186 bits (473), Expect = 2e-56
 Identities = 98/287 (34%), Positives = 143/287 (49%), Gaps = 41/287 (14%)

Query: 11  TLLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGP--------YDYTRSGNPTRDALE 61
           TL ++   E DP  G+ + P+YQT ++   S                Y+R  NPT D LE
Sbjct: 4   TLQLHAGQEPDPTTGSRAVPIYQTTSYVFDSTEHAAALFGLQEAGNIYSRLMNPTTDVLE 63

Query: 62  SLLAKLDKADRALCFTSGMAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
             +A L+    AL   SG AA   A+ +L   G+ IV+   LYGGT  L      + G+ 
Sbjct: 64  QRIAALEGGVAALAVASGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLGIE 123

Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS 180
           V+ V+  D +E   AI   TK V+ E+  NP   + DI  IAE+AHAHG  L+VDN+  +
Sbjct: 124 VRFVDPDDPEEFEKAIDENTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFAT 183

Query: 181 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG------ERLAK------------ 222
           P L RP++ GADIV+HSATK+I GH   + GV+   G       R               
Sbjct: 184 PYLCRPIDHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWANGRFPLFTTPDPSYHGLV 243

Query: 223 ------ELYFLQNAE-------GSGLAPFDCWICLRGVKTMALRVEK 256
                    F+  A        G+ L+PF+ ++ L+G++T++LR+E+
Sbjct: 244 FTETFGNPAFIVKARVQLLRDLGAALSPFNAFLLLQGLETLSLRMER 290

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities [Amino acid biosynthesis, Aspartate family, Amino acid biosynthesis, Serine family]. Length = 418

>gnl|CDD|168320 PRK05968, PRK05968, hypothetical protein; Provisional

 Score =  181 bits (460), Expect = 7e-55
 Identities = 96/256 (37%), Positives = 150/256 (58%), Gaps = 20/256 (7%)

Query: 17  SNEFDPYGALSTPLYQTATFKQPS--------ATENGPYDYTRSGNPTRDALESLLAKLD 68
            +E + + A+  P++QT+ F   S        A E     Y+R  NPT  A E +LAKL+
Sbjct: 17  HDEGNAFDAVVPPIFQTSLFTFDSYDEMEDVYAGEKVRPIYSRGDNPTVRAFEEMLAKLE 76

Query: 69  KADRALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC 127
            A+ A  F SGMAA+++ V   +  G+ IVA   +Y    RL   +  + GV V  V+  
Sbjct: 77  GAEDARGFASGMAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDGR 136

Query: 128 DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPL 187
           D + VA A+ P  KL+++ESPT+   ++ D+  +A +A  HG + ++DNS  SPV  RP+
Sbjct: 137 DEEAVAKAL-PGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPVFQRPI 195

Query: 188 ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE-----GSGLAPFDCWI 242
            LG D+V+HSA+K++ GHSD +AGV+A   E +A+      NAE     G+ L+PF+ W+
Sbjct: 196 TLGVDLVIHSASKYLGGHSDTVAGVVAGSKEHIAR-----INAEAYPYLGAKLSPFEAWL 250

Query: 243 CLRGVKTMALRVEKQQ 258
            LRG++T+ LR++  +
Sbjct: 251 LLRGLRTLPLRMKAHE 266

Length = 389

>gnl|CDD|236061 PRK07582, PRK07582, cystathionine gamma-lyase; Validated

 Score =  180 bits (459), Expect = 7e-55
 Identities = 86/240 (35%), Positives = 121/240 (50%), Gaps = 5/240 (2%)

Query: 19  EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTS 78
           E  P   +       A +        GP  Y R+ NPT  ALE+ L +L+    AL F S
Sbjct: 15  EAVPGEPVLPGPVFAAPYHLSPGEPTGPDTYGRASNPTWRALEAALGELE-GAEALVFPS 73

Query: 79  GMAALAAVTH-LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG 137
           GMAA+ AV   LL  G+ +V   D Y     L        GV V+   T  +   A A  
Sbjct: 74  GMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLGVTVREAPTAGM---AEAAL 130

Query: 138 PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHS 197
               LV  E+P+NP   +CD+  +A  AHA GALL+VDN+  +P+  RPLELGAD+V+ S
Sbjct: 131 AGADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTATPLGQRPLELGADLVVAS 190

Query: 198 ATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQ 257
            TK + GHSD++ G +A +   L   +   +   G+   PF+ W+  R + T+ LR  +Q
Sbjct: 191 DTKALTGHSDLLLGYVAGRDPELMAAVERWRLLAGAIPGPFEAWLAHRSLGTLGLRFARQ 250

Length = 366

>gnl|CDD|102374 PRK06434, PRK06434, cystathionine gamma-lyase; Validated

 Score =  178 bits (453), Expect = 7e-54
 Identities = 93/252 (36%), Positives = 141/252 (55%), Gaps = 23/252 (9%)

Query: 21  DP-YGALSTPLYQTATFKQPSA--------TENGPYDYTRSGNPTRDALESLLAKLDKAD 71
           DP +G ++TP+++T+TF  P++        T   PY YTR GNPT  A E   A L+ A+
Sbjct: 21  DPRFGNVTTPIFETSTFVYPNSEKEAYMDSTRGMPYIYTRWGNPTVQAFEEKYAVLENAE 80

Query: 72  RALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVK-----RVN 125
            AL F+SGM A+ +A+  L+  G+ I++  DLYG T    ++V    G+ V      R+N
Sbjct: 81  HALSFSSGMGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLKTLGIHVDYIDTDRLN 140

Query: 126 TCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR 185
           + D D           L++ ES TNP  ++ DI+ ++     H   ++VD +  SP    
Sbjct: 141 SLDFDPSN------YDLIYAESITNPTLKVPDIKNVSS--FCHENDVIVDATFASPYNQN 192

Query: 186 PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR 245
           PL+LGAD+V+HSATK+I+GHSDV+ GV     + +   L   +   GS   P   ++ LR
Sbjct: 193 PLDLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGSNPDPIQAYLALR 252

Query: 246 GVKTMALRVEKQ 257
           G+KT+ LR+EK 
Sbjct: 253 GLKTLGLRMEKH 264

Length = 384

>gnl|CDD|181554 PRK08776, PRK08776, cystathionine gamma-synthase; Provisional

 Score =  178 bits (452), Expect = 1e-53
 Identities = 93/237 (39%), Positives = 139/237 (58%), Gaps = 1/237 (0%)

Query: 23  YGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAA 82
           YGA++ P+  ++ F          YDYTRSGNPTRD L   LA+L+     +   +GM A
Sbjct: 28  YGAVTPPIVLSSNFSFDGFGNKRQYDYTRSGNPTRDLLGEALAELEGGAGGVITATGMGA 87

Query: 83  LAAVTH-LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTK 141
           +  V + LL  G+ +V   D YGG+ RL + +  K    +   +  D   +A A+    K
Sbjct: 88  INLVLNALLQPGDTLVVPHDAYGGSWRLFNALAKKGHFALITADLTDPRSLADALAQSPK 147

Query: 142 LVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKF 201
           LV +E+P+NP  +I D+R + E AH  GAL +VDN+ +SP L +PLE GAD+V+HS TK+
Sbjct: 148 LVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSPALQKPLEFGADLVLHSTTKY 207

Query: 202 IAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ 258
           I GHSDV+ G +  +   L ++L +  NA G   +PFD ++ LRG++T+  R+   Q
Sbjct: 208 INGHSDVVGGAVVARDAELHQQLVWWANALGLTGSPFDAFLTLRGLRTLDARLRVHQ 264

Length = 405

>gnl|CDD|236159 PRK08134, PRK08134, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  175 bits (445), Expect = 3e-52
 Identities = 101/299 (33%), Positives = 143/299 (47%), Gaps = 44/299 (14%)

Query: 1   MSVEEEPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSAT--------ENGPYDYTR 51
           M     PG  TL ++     DP  GA + P++ T +F    +         E   + Y+R
Sbjct: 1   MPGMSPPGFDTLALHAGAAPDPATGARAVPIHLTTSFVFRDSDHAAALFNLERAGHVYSR 60

Query: 52  SGNPTRDALESLLAKLDKADRALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLL 110
             NPT   LE  +A L+    A+   SG AAL  A+  L+G G  IVA   LYGG+  LL
Sbjct: 61  ISNPTVAVLEERVAALEGGVGAIATASGQAALHLAIATLMGAGSHIVASSALYGGSHNLL 120

Query: 111 SRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA 170
                + G+    V   D+D   +AI P T+L++ E+  NP  ++ DI  +A +AH  G 
Sbjct: 121 HYTLRRFGIETTFVKPGDIDGWRAAIRPNTRLLFGETLGNPGLEVLDIPTVAAIAHEAGV 180

Query: 171 LLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL---------- 220
            LLVD++  +P L RP E GAD+V HSATKF+ GH   + GVL V G R           
Sbjct: 181 PLLVDSTFTTPYLLRPFEHGADLVYHSATKFLGGHGTAIGGVL-VDGGRFDWEASGKFPE 239

Query: 221 AKELY----------------FLQNAE-------GSGLAPFDCWICLRGVKTMALRVEK 256
             E Y                FL  A        G+ L+P + W  L+G++T+ LR+E+
Sbjct: 240 LTEPYAGFHGMVFAEESTVAAFLLRARREGLRDFGACLSPMNAWQLLQGIETLPLRMER 298

Length = 433

>gnl|CDD|236201 PRK08248, PRK08248, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  171 bits (434), Expect = 1e-50
 Identities = 102/299 (34%), Positives = 153/299 (51%), Gaps = 44/299 (14%)

Query: 1   MSVEEEPGVSTLLMNFSNEFDPY-GALSTPLYQTAT--FKQP-------SATENGPYDYT 50
           MS E    + TL ++   E DP  G+ + P+YQT +  F+         S  E G   YT
Sbjct: 1   MSEERTFRLETLAIHAGQEIDPTTGSRAVPIYQTTSYGFRDSEHAANLFSLKEFG-NIYT 59

Query: 51  RSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRL 109
           R  NPT D  E  +A L+    AL  +SG AA+  ++ ++   G+EIV+   LYGGT  L
Sbjct: 60  RIMNPTTDVFEKRIAALEGGIGALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNL 119

Query: 110 LSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHG 169
            +   PK G+ VK V+  D +   +AI   TK ++ E+  NP+  + DI  +A +AH HG
Sbjct: 120 FAHTLPKLGITVKFVDPSDPENFEAAITDKTKALFAETIGNPKGDVLDIEAVAAIAHEHG 179

Query: 170 ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG------------ 217
             L+VDN+  SP L RP+E GADIV+HSATKFI GH   + GV+   G            
Sbjct: 180 IPLIVDNTFASPYLLRPIEHGADIVVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPG 239

Query: 218 --------------ERLAKELYFLQ------NAEGSGLAPFDCWICLRGVKTMALRVEK 256
                         + + +  Y  +         G+ L+PF+ ++ L+G++T+ LR+E+
Sbjct: 240 LTEPDPSYHGLVYTDAVGEAAYITKARVQLLRDLGAALSPFNSFLLLQGLETLHLRMER 298

Length = 431

>gnl|CDD|168979 PRK07504, PRK07504, O-succinylhomoserine sulfhydrylase; Reviewed

 Score =  170 bits (432), Expect = 1e-50
 Identities = 86/247 (34%), Positives = 135/247 (54%), Gaps = 13/247 (5%)

Query: 22  PYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRA 73
            +G  S  L+ T  F   +A         E+  + Y+R  NPT D  E  +  L+ A+ A
Sbjct: 24  QFGETSEALFLTQGFVYDTAEAAEARFKGEDPGFIYSRYSNPTVDMFEKRMCALEGAEDA 83

Query: 74  LCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEV 132
               SGMAA+ AA+   +  G+ +VA   L+G    ++  + P+ G+    V+  DLD  
Sbjct: 84  RATASGMAAVTAAILCQVKAGDHVVAARALFGSCRYVVETLLPRYGIESTLVDGLDLDNW 143

Query: 133 ASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGAD 192
             A+ P TK+ ++ESPTNP  ++ DI  +A++A+  GA L+VDN   +P+  +PLELGA 
Sbjct: 144 EKAVRPNTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNVFATPLFQKPLELGAH 203

Query: 193 IVMHSATKFIAGHSDVMAGVLAVKGERLAKEL--YFLQNAEGSGLAPFDCWICLRGVKTM 250
           IV++SATK I G    + GV+      + + L  YF     G  L+PF+ W  L+G++T+
Sbjct: 204 IVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFRHT--GPSLSPFNAWTLLKGLETL 261

Query: 251 ALRVEKQ 257
            +RV +Q
Sbjct: 262 PVRVRQQ 268

Length = 398

>gnl|CDD|236105 PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  167 bits (424), Expect = 5e-49
 Identities = 97/275 (35%), Positives = 141/275 (51%), Gaps = 44/275 (16%)

Query: 24  GALSTPLYQTATF----KQPSA-----TENGPYDYTRSGNPTRDALESLLAKLDKADRAL 74
            A + P+YQT ++       +A      E G   YTR  NPT+D +E  +A L+    AL
Sbjct: 30  NARALPIYQTTSYTFDDTDHAAALFGLAEPGNI-YTRIMNPTQDVVEQRIAALEGGVAAL 88

Query: 75  CFTSGMAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV-NTCDLDEV 132
              SG AA   A+ +L G G+ IV+   LYGGT  L     PK G+ V  V +  DLD  
Sbjct: 89  LLASGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVEDPDDLDAW 148

Query: 133 ASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGAD 192
            +A+ P TK  + E+ +NP+  + DI  +AE+AH  G  L+VDN+I +P L RPLE GAD
Sbjct: 149 RAAVRPNTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATPYLIRPLEHGAD 208

Query: 193 IVMHSATKFIAGHSDVMAGVLAVKGERL-------------------------------A 221
           IV+HSATK++ GH   +AGV+ V G                                   
Sbjct: 209 IVVHSATKYLGGHGTAIAGVI-VDGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPAYAL 267

Query: 222 KELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEK 256
           K    L    GS ++PF+ ++  +G++T++LR+E+
Sbjct: 268 KARVQLLRDLGSAISPFNAFLIAQGLETLSLRIER 302

Length = 436

>gnl|CDD|235807 PRK06460, PRK06460, hypothetical protein; Provisional

 Score =  160 bits (407), Expect = 4e-47
 Identities = 80/236 (33%), Positives = 138/236 (58%), Gaps = 5/236 (2%)

Query: 21  DPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGM 80
           +  GA++TP+YQT  +  P   E   Y Y+R  NPT   L   + +L+ A+  + F+SGM
Sbjct: 14  EATGAITTPIYQTTAYHYP---EGEKYRYSREANPTVLELTKKIVELENAEMGVAFSSGM 70

Query: 81  AALAAVT-HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 139
            A++     LL  G  ++   D++G + R  +      GV V   N    + +  A    
Sbjct: 71  GAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDASNPGSDNIIEKAKSKR 130

Query: 140 TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 199
             +V+VE+ TNP  ++ DI +++++   +G++L+VD +  +P+  +PLELGADIV+HSA+
Sbjct: 131 YDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFSTPINQKPLELGADIVVHSAS 190

Query: 200 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVE 255
           KF+AGH+DV+AG+ A  G+ L   +  ++   G+ L P   ++ LRG+KT+ +R++
Sbjct: 191 KFLAGHNDVIAGLAAGYGK-LLNVIDQMRRTLGTSLDPHAAYLTLRGIKTLKIRMD 245

Length = 376

>gnl|CDD|180344 PRK05994, PRK05994, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  158 bits (401), Expect = 9e-46
 Identities = 98/293 (33%), Positives = 138/293 (47%), Gaps = 42/293 (14%)

Query: 7   PGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGPY--------DYTRSGNPTR 57
           PG +TL ++   + DP  GA +TP+YQT +F    A               YTR  NPT 
Sbjct: 6   PGFATLAVHAGAQPDPTTGARATPIYQTTSFVFNDADHAASLFGLQAFGNIYTRITNPTN 65

Query: 58  DALESLLAKLDKADRALCFTSGMAALAAVTH-LLGTGEEIVAGDDLYGGTDRLLSRVTPK 116
             LE  +A L+    AL   SG AA   V H LL  G+E +A   LYGG+          
Sbjct: 66  AVLEERVAALEGGTAALAVASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFKS 125

Query: 117 TGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDN 176
            G  V+  +  D      AI P TK +++ES  NP   + DI  IAE+AH  G  L+VDN
Sbjct: 126 FGWQVRWADADDPASFERAITPRTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDN 185

Query: 177 SIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLA---------------------- 214
           ++ SP L RP+E GADIV+HS TKF+ GH + M G++                       
Sbjct: 186 TLASPYLIRPIEHGADIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPE 245

Query: 215 VKGERLAK---ELYFLQNAE-------GSGLAPFDCWICLRGVKTMALRVEKQ 257
             G  L +      F   A        G  ++PF+ ++ L G++T+ LR+++ 
Sbjct: 246 YHGLVLHETFGNFAFAIAARVLGLRDLGPAISPFNAFLILTGIETLPLRMQRH 298

Length = 427

>gnl|CDD|236103 PRK07810, PRK07810, O-succinylhomoserine sulfhydrylase; Provisional

 Score =  156 bits (397), Expect = 2e-45
 Identities = 82/240 (34%), Positives = 129/240 (53%), Gaps = 9/240 (3%)

Query: 27  STPLYQTATFKQPSATE-----NGPYD---YTRSGNPTRDALESLLAKLDKADRALCFTS 78
           +  LY T+ +   SA        G  D   Y+R GNPT    E  L  ++ A+      S
Sbjct: 34  AEALYLTSGYVYESAAAAEAAFTGELDRFVYSRYGNPTVSMFEERLRLIEGAEACFATAS 93

Query: 79  GMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG 137
           GM+A+  A+  LLG G+ +VA   L+G    + + + P+ GV    V+  DL +   A+ 
Sbjct: 94  GMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWGVETVFVDGEDLSQWEEALS 153

Query: 138 PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHS 197
             T+ V+ E+P+NP Q + DI  ++E+AHA GA +++DN   +P+L R L LGAD+V++S
Sbjct: 154 VPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPLLQRGLPLGADVVVYS 213

Query: 198 ATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQ 257
            TK I G   V+ G +    E +   +  L    G  L+ F+ W+ L+G++T+ALRV   
Sbjct: 214 GTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPALSAFNAWVLLKGLETLALRVRHS 273

Length = 403

>gnl|CDD|180392 PRK06084, PRK06084, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  150 bits (379), Expect = 1e-42
 Identities = 94/277 (33%), Positives = 142/277 (51%), Gaps = 46/277 (16%)

Query: 25  ALSTPLYQTATFKQPSATENGP--YD-------YTRSGNPTRDALESLLAKLDKADRALC 75
           A++ P+YQT ++     T++G   +D       YTR  NPT D LE  +A L+    AL 
Sbjct: 20  AVAVPIYQTTSYAFDD-TQHGADLFDLKVPGNIYTRIMNPTNDVLEQRVAALEGGVGALA 78

Query: 76  FTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVAS 134
             SGMAA+  A+  +   G+ IV+   LYGGT  LL+   P+ G+  +     D+  + +
Sbjct: 79  VASGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAAHDDIAALEA 138

Query: 135 AIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIV 194
            I   TK V+ ES  NP   I DI+ +A+ AH HG  L+VDN++ +PVL RP E GADIV
Sbjct: 139 LIDERTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATPVLCRPFEHGADIV 198

Query: 195 MHSATKFIAGHSDVMAGVLAVKG---------------------------ERLAKELYF- 226
           +HS TK+I GH   + G++   G                           E      +  
Sbjct: 199 VHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPSYHGVTYTEAFGPAAFIG 258

Query: 227 ------LQNAEGSGLAPFDCWICLRGVKTMALRVEKQ 257
                 L+N  G+ L+PF+ ++ L+G++T+ALR+E+ 
Sbjct: 259 RCRVVPLRNM-GAALSPFNAFLILQGLETLALRMERH 294

Length = 425

>gnl|CDD|235650 PRK05939, PRK05939, hypothetical protein; Provisional

 Score =  148 bits (375), Expect = 3e-42
 Identities = 70/200 (35%), Positives = 114/200 (57%), Gaps = 10/200 (5%)

Query: 23  YGALSTPLYQTATFKQPSATE--------NGPYDYTRSGNPTRDALESLLAKLDKADRAL 74
           +GA+  P++ + T+    A +           + Y R G PT  ALE+ + K++     +
Sbjct: 7   HGAVHKPIHTSVTYGYEDARDLIDVFQGKKPGFTYARQGTPTTAALEAKITKMEGGVGTV 66

Query: 75  CFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVA 133
           CF +GMAA+AAV   LL  G+ +V+   L+G T+ L   +    GV V  V+  D+  VA
Sbjct: 67  CFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGTLR-GLGVEVTMVDATDVQNVA 125

Query: 134 SAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADI 193
           +AI P T++V+VE+  NP  Q+ D+  I  +    G L +VDN++ SP L RP ++GA +
Sbjct: 126 AAIRPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPWLFRPKDVGASL 185

Query: 194 VMHSATKFIAGHSDVMAGVL 213
           V++S +K+IAGH + + G +
Sbjct: 186 VINSLSKYIAGHGNALGGAV 205

Length = 397

>gnl|CDD|180809 PRK07049, PRK07049, methionine gamma-lyase; Validated

 Score =  144 bits (366), Expect = 9e-41
 Identities = 86/283 (30%), Positives = 148/283 (52%), Gaps = 41/283 (14%)

Query: 10  STLLMNFSNEFDPY---GALSTPLYQTATF------------------KQPSATENGPYD 48
            T ++N+   +DP    GA+  P++ T+TF                  K+P A E     
Sbjct: 19  ETQMLNYG--YDPELSEGAVKPPVFLTSTFVFRSAEDGRDFFDYVSGRKEPPAGEGAGLV 76

Query: 49  YTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTD 107
           Y+R  +P  + +E  LA  + A+ A  F+SGM+A+A      +  G+ I+    LYGGT+
Sbjct: 77  YSRFNHPNSEIVEDRLAVYEGAESAALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTE 136

Query: 108 RLLSRVTPKTGV----VVKRVNTCDLDEV---ASAIGPWTKLVWVESPTNPRQQICDI-- 158
            LL++     GV        ++   +      A+A G    L+ +E+P NP   + D+  
Sbjct: 137 TLLAKTFRNFGVGAVGFADGLSEAAIGAAAEAAAAKGR-VSLILIETPANPTNSLVDVAA 195

Query: 159 -RKIAEM---AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLA 214
            R++A+       H  ++  DN+++ PV  +PLE GAD+ ++S TK++ GHSD++AG  A
Sbjct: 196 VRRVADAIEARQGHRPIIACDNTLLGPVFQKPLEHGADLSVYSLTKYVGGHSDLVAG--A 253

Query: 215 VKGER-LAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEK 256
           V G + L +++  L++A G+ L P  CW+  R ++T+ LR+E+
Sbjct: 254 VLGRKALIRQVRALRSAIGTQLDPHSCWMLGRSLETLVLRMER 296

Length = 427

>gnl|CDD|168128 PRK05613, PRK05613, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  145 bits (366), Expect = 1e-40
 Identities = 99/281 (35%), Positives = 146/281 (51%), Gaps = 47/281 (16%)

Query: 22  PYGALSTPLYQTATF--------KQPSATEN-GPYDYTRSGNPTRDALESLLAKLDKADR 72
              A + P+YQT ++        KQ  A E+ GP  Y+R  NPT +ALE+ +A L+    
Sbjct: 28  DTSARNLPIYQTTSYVFDSAEHAKQRFALEDLGPI-YSRLTNPTVEALENRIASLEGGVH 86

Query: 73  ALCFTSGMAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV-NTCDLD 130
           A+ F SG AA  AA+ +L G G+ IV    LYGGT+ L      + G+ V  V N  D +
Sbjct: 87  AVAFASGQAAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVENPDDPE 146

Query: 131 EVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELG 190
              +A+ P TK  + E+  NP+  + DI  +AE+AH +   L+VDN+I +  L RPLELG
Sbjct: 147 SWQAAVQPNTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNTIATAALVRPLELG 206

Query: 191 ADIVMHSATKFIAGHSDVMAGVLAVKG------ERLAKEL--YF---------LQNAE-- 231
           AD+V+ S TKF  G+   + GVL   G      ER  K +  YF         L+ A+  
Sbjct: 207 ADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFVTPDPAYHGLKYADLG 266

Query: 232 ----------------GSGLAPFDCWICLRGVKTMALRVEK 256
                           G+ L+PF+ W+  +G+ T++LR+E+
Sbjct: 267 APAFGLKARAGLLRDTGATLSPFNAWVTAQGLDTLSLRLER 307

Length = 437

>gnl|CDD|215134 PLN02242, PLN02242, methionine gamma-lyase

 Score =  140 bits (355), Expect = 4e-39
 Identities = 76/220 (34%), Positives = 123/220 (55%), Gaps = 18/220 (8%)

Query: 13  LMNFSNEFDPYGALSTPLYQTATF--KQPSA----------TENGPYDYTRSGNPTRDAL 60
           L +  +EF  +G ++  +  +ATF   +P             +   Y Y+R  NPT   L
Sbjct: 22  LASARHEFGEHGGVNMSIEASATFTVMEPDTMRRMFSGELGPDRDFYIYSRHFNPTVLNL 81

Query: 61  ESLLAKLDKADRALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKT-G 118
              +A L+  + A C  SGM+A+++V   L  +G  +VA + LYGGT  LL+   P+   
Sbjct: 82  GRQMAALEGTEAAYCTASGMSAISSVLLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCN 141

Query: 119 VVVKRVNTCDLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS 177
           +    V+  DL+ V  A+ P  TK+++ ES +NP   + DI ++A +AH  G  ++VDN+
Sbjct: 142 ITTTFVDITDLEAVKKAVVPGKTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNT 201

Query: 178 IMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG 217
             +P++  P  LGAD+V+HS +KFI+G +D++AG  AV G
Sbjct: 202 -FAPMVLSPARLGADVVVHSISKFISGGADIIAG--AVCG 238

Length = 418

>gnl|CDD|235657 PRK05967, PRK05967, cystathionine beta-lyase; Provisional

 Score =  134 bits (339), Expect = 4e-37
 Identities = 83/267 (31%), Positives = 135/267 (50%), Gaps = 13/267 (4%)

Query: 1   MSVEEEPGVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSA----TENGPYDYTRSGNP 55
               E+ G++T L +  N+  D +G ++ P+   +T   P A    T    Y Y   G P
Sbjct: 5   QLKTEKAGINTRLAHDGNDPGDYHGFVNPPVVHASTVLFPDAETMATRGQKYTYGTRGTP 64

Query: 56  TRDALESLLAKLDKADRALCFTSGMAALAAVT----HLLGTGEEIVAGDDLYGGTDRLLS 111
           T DAL   +  L+ +   +   SG   LAAVT      L  G+  +  D +Y  T     
Sbjct: 65  TTDALCKAIDALEGSAGTILVPSG---LAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCD 121

Query: 112 RVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGAL 171
            +  + GV V+  +      +A  + P TK+V  E+P +   ++ DI  IAE AH HGA+
Sbjct: 122 TMLKRLGVEVEYYDPEIGAGIAKLMRPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAI 181

Query: 172 LLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE 231
           +++DN+  +P+  RPL+ G DI +H+ATK+ +GHSD++ G ++   E+   +L       
Sbjct: 182 VMMDNTWATPLYFRPLDFGVDISIHAATKYPSGHSDILLGTVSAN-EKCWPQLLEAHGTL 240

Query: 232 GSGLAPFDCWICLRGVKTMALRVEKQQ 258
           G    P D +  LRG++TM +R+E  +
Sbjct: 241 GLCAGPDDTYQILRGLRTMGIRLEHHR 267

Length = 395

>gnl|CDD|130391 TIGR01324, cysta_beta_ly_B, cystathionine beta-lyase, bacterial

 Score =  129 bits (326), Expect = 3e-35
 Identities = 66/247 (26%), Positives = 123/247 (49%), Gaps = 6/247 (2%)

Query: 17  SNEFDPYGALSTPLYQTATFKQPSAT----ENGPYDYTRSGNPTRDALESLLAKLDKADR 72
                  G+++ PL + +T    S        G   Y R G  T  AL+  + +L+    
Sbjct: 8   RQPRFSQGSVNPPLQRASTVLFDSHAAQRRAKGELTYGRRGTLTHFALQDAMCELEGGAG 67

Query: 73  ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDE 131
              + SG+AA+  ++   +  G+ ++  D  Y  T      V  + GV +   +    ++
Sbjct: 68  CYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMGVDITYYDPLIGED 127

Query: 132 VASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGA 191
           +A+ I P TK++++E+P++   +I DI  IA+ A   G ++++DN+  + +L +PLE G 
Sbjct: 128 IATLIQPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLLFKPLEHGV 187

Query: 192 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA 251
           DI + + TK++ GHSD+M G   V   R   +L       G  +   D +  LRG++T+ 
Sbjct: 188 DISIQAGTKYLVGHSDIMIGT-VVANARTWDQLREHSYLMGQMVDADDAYTTLRGLRTLG 246

Query: 252 LRVEKQQ 258
           +R+++ Q
Sbjct: 247 VRLKQHQ 253

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys [Amino acid biosynthesis, Aspartate family]. Length = 377

>gnl|CDD|180810 PRK07050, PRK07050, cystathionine beta-lyase; Provisional

 Score =  117 bits (296), Expect = 7e-31
 Identities = 62/240 (25%), Positives = 114/240 (47%), Gaps = 9/240 (3%)

Query: 25  ALSTPLYQTATFKQPSATE--------NGPYDYTRSGNPTRDALESLLAKLDKADRALCF 76
           +  TP+ + +T   P            +  + Y     PT  AL   LA+++    AL  
Sbjct: 27  SFVTPVARASTVVFPDLATMRALDWRQDVQWRYGLHATPTSLALAQRLAEIEGGRHALLQ 86

Query: 77  TSGMAALAAVTH-LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASA 135
            SG+AA++ V   L+  G++++  D+ YG        +    G+ V+  +      +A  
Sbjct: 87  PSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFGITVRFYDPLIGAGIADL 146

Query: 136 IGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVM 195
           I P T+L+W+E+P +   ++ D+  I   A A G +  +DN+  + +  +P E G DI +
Sbjct: 147 IQPNTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSAGLAFKPFEHGVDISV 206

Query: 196 HSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVE 255
            + TK+ +G SDV+ G        L  +L   +   G G++  DC + LRG+ ++ +R+ 
Sbjct: 207 QALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIGVSADDCSLVLRGLPSLQVRLA 266

Length = 394

>gnl|CDD|181615 PRK09028, PRK09028, cystathionine beta-lyase; Provisional

 Score =  110 bits (277), Expect = 4e-28
 Identities = 67/221 (30%), Positives = 119/221 (53%), Gaps = 12/221 (5%)

Query: 44  NGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDL 102
           NG   Y R G PT  A ++ + +L+       + SG AA++ A+   L  G+ ++  D  
Sbjct: 50  NGEMFYGRRGTPTHFAFQAAIVELEGGAGTALYPSGAAAISNALLSFLKAGDHLLMVDSC 109

Query: 103 YGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIA 162
           Y  T  L  ++    G+     +    + +   I P TK++++ESP +   ++ D+  ++
Sbjct: 110 YEPTRDLCDKILKGFGIETTYYDPMIGEGIRELIRPNTKVLFLESPGSITMEVQDVPTLS 169

Query: 163 EMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK 222
            +AH H  ++++DN+  SP+ SRP E+G DI + +ATK+I GHSDVM G  A      A 
Sbjct: 170 RIAHEHDIVVMLDNTWASPINSRPFEMGVDISIQAATKYIVGHSDVMLGT-AT-----AN 223

Query: 223 ELYFLQNAEGSGL-----APFDCWICLRGVKTMALRVEKQQ 258
           E ++ Q  E S L     +P D ++ +RG++T+ +R+ + +
Sbjct: 224 EKHWDQLREHSYLMGQCTSPDDVYLAMRGLRTLGVRLAQHE 264

Length = 394

>gnl|CDD|102505 PRK06702, PRK06702, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  108 bits (270), Expect = 4e-27
 Identities = 77/270 (28%), Positives = 126/270 (46%), Gaps = 41/270 (15%)

Query: 29  PLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGM 80
           PLYQ+ T+K  ++         E   Y YTR GNPT  A E  LA+L+    A+   SG 
Sbjct: 27  PLYQSTTYKYDTSDDLAALFNLEAEGYIYTRIGNPTLAAFEQKLAELEGGVGAVATASGQ 86

Query: 81  AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN-TCDLDEVASAIGP 138
           AA+  AV ++  +G+ ++    +YGGT  L      K G+ V   N     DE+ +    
Sbjct: 87  AAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTADEIVALAND 146

Query: 139 WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSA 198
            TKLV+ ES  NP   + + ++ ++ A       +VDN++ +P L +  E GA+I++HS 
Sbjct: 147 KTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTLATPYLCQAFEHGANIIVHST 206

Query: 199 TKFIAGHSDVMAGVLAVKGE-------------------------------RLAKELYFL 227
           TK+I GH+  + G++   G                                 + K    L
Sbjct: 207 TKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQL 266

Query: 228 QNAEGSGLAPFDCWICLRGVKTMALRVEKQ 257
               G+ ++PF+ +I   G++T+ LR+E+ 
Sbjct: 267 LRDYGNCMSPFNAYISNIGLETLHLRMERH 296

Length = 432

>gnl|CDD|181231 PRK08114, PRK08114, cystathionine beta-lyase; Provisional

 Score = 77.8 bits (192), Expect = 2e-16
 Identities = 60/220 (27%), Positives = 111/220 (50%), Gaps = 8/220 (3%)

Query: 44  NGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDL 102
           NG   Y R G  T  +L+  + +L+       +  G AA+A A+   +  G+ ++     
Sbjct: 51  NGELFYGRRGTLTHFSLQEAMCELEGGAGCALYPCGAAAVANAILAFVEQGDHVLMTGTA 110

Query: 103 YGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKI- 161
           Y  T    S++  K GV     +     ++A  I P TK+V++ESP +   ++ D+  I 
Sbjct: 111 YEPTQDFCSKILSKLGVTTTWFDPLIGADIAKLIQPNTKVVFLESPGSITMEVHDVPAIV 170

Query: 162 -AEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL 220
            A  +    A++++DN+  + VL + L+ G DI + + TK++ GHSD M G  AV   R 
Sbjct: 171 AAVRSVNPDAVIMIDNTWAAGVLFKALDFGIDISIQAGTKYLVGHSDAMIGT-AVANARC 229

Query: 221 AKELYFLQNAEGSG-LAPFD-CWICLRGVKTMALRVEKQQ 258
            ++L   +N+   G +   D  ++  RG++T+ +R+ + +
Sbjct: 230 WEQLR--ENSYLMGQMVDADTAYMTSRGLRTLGVRLRQHE 267

Length = 395

>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

 Score = 67.3 bits (165), Expect = 8e-13
 Identities = 61/208 (29%), Positives = 94/208 (45%), Gaps = 21/208 (10%)

Query: 30  LYQTATFKQPSATENGPYDYTRSGNPTR--DALESLLAKLDKADRA--LCFTSGMA-ALA 84
           L   A + +          +T +   T   +A    +A+   AD +  + FT G   AL 
Sbjct: 39  LDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEALN 98

Query: 85  AVTHLLGT----GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASA 135
            V   LG     G+EIV  D  +         +  +TG  V+ +        DLD +   
Sbjct: 99  LVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKL 158

Query: 136 IGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPL---ELGAD 192
           I P TKLV +   +N    +  +++IAE+AH HGAL+LVD +  +  L  P+   ELG D
Sbjct: 159 ITPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHL--PIDVQELGCD 216

Query: 193 IVMHSATKFIAGHSDVMAGVLAVKGERL 220
            +  S  K++ G + +  GVL V+ E L
Sbjct: 217 FLAFSGHKWLLGPTGI--GVLYVRKELL 242

Length = 405

>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

 Score = 57.4 bits (139), Expect = 3e-10
 Identities = 43/175 (24%), Positives = 65/175 (37%), Gaps = 21/175 (12%)

Query: 57  RDALESLLAKL--DKADRALCFTSGMAALAAVTH-LLGTGEEIVAGDDLYGGTDRLLSRV 113
            + LE  LA+L     D+A+   SG  A  A    LLG G+E++   + +G         
Sbjct: 2   LEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSR---YWVA 58

Query: 114 TPKTGVVVKRVNTCD--------LDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA 165
               G     V   D                 P   L+ +   T     +  +++I ++A
Sbjct: 59  AELAGAKPVPVPVDDAGYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIA 118

Query: 166 HAHGALLLVDNS----IMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVK 216
             +G LLLVD +              E GAD+V  S  K + G      GV+ VK
Sbjct: 119 KEYGILLLVDAASAGGASPAPGVLIPEGGADVVTFSLHKNLGG---EGGGVVIVK 170

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170

>gnl|CDD|233664 TIGR01976, am_tr_V_VC1184, cysteine desulfurase family protein, VC1184 subfamily

 Score = 59.4 bits (144), Expect = 3e-10
 Identities = 50/192 (26%), Positives = 84/192 (43%), Gaps = 13/192 (6%)

Query: 33  TATFKQPSATENGPYDYTR-SGNPTRDALESLLAKLDKADRALCFTSGMAALA-----AV 86
           +A   + +A   G Y+ +R +     DA E++   L+     + F +   +L      A+
Sbjct: 38  SAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNADPPEVVFGANATSLTFLLSRAI 97

Query: 87  THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVK----RVNTCDLDE--VASAIGPWT 140
           +   G G+E++     +        +   + G  VK       T +L    +AS + P T
Sbjct: 98  SRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEATGELHPDDLASLLSPRT 157

Query: 141 KLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSP-VLSRPLELGADIVMHSAT 199
           +LV V + +N    I D+  I E+ HA GAL++VD    +P  L      GAD +  SA 
Sbjct: 158 RLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVHYAPHGLIDVQATGADFLTCSAY 217

Query: 200 KFIAGHSDVMAG 211
           KF   H  ++ G
Sbjct: 218 KFFGPHMGILWG 229

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase [Unknown function, Enzymes of unknown specificity]. Length = 397

>gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

 Score = 56.4 bits (137), Expect = 3e-09
 Identities = 45/187 (24%), Positives = 76/187 (40%), Gaps = 41/187 (21%)

Query: 52  SGN-PTRDALESLLAKLDKADRALCFTSGMAA-LAAVTHLLGTGEEIVAGDDLYGGTDRL 109
           SG     + LE  LA+    + AL F+SG AA    ++ L G G+ I++        D L
Sbjct: 42  SGTSDLHEELEEELAEFHGKEAALVFSSGYAANDGVLSTLAGKGDLIIS--------DSL 93

Query: 110 ----------LSRVTPKTGVVVKRVNTCDLDEV-ASAIGPWT-KLVWVESPTNPRQQICD 157
                     LS        + K  +  DL+++   A  P+  KL+  E   +    I  
Sbjct: 94  NHASIIDGIRLSGAKK---RIFKHNDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAP 150

Query: 158 IRKIAEMAHAHGALLLVDNS----IMSP----VLSRPLELGA-DIVMHSATK-------F 201
           + ++ ++A  +GA+L VD +    +  P    V          DI+M +  K       +
Sbjct: 151 LPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGAVGGY 210

Query: 202 IAGHSDV 208
           IAG  ++
Sbjct: 211 IAGSKEL 217

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. Length = 349

>gnl|CDD|235655 PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed

 Score = 56.3 bits (137), Expect = 4e-09
 Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 28/131 (21%)

Query: 59  ALESLLAKLDKADRALCFTSG-MAALAAVTHLLGTGEEIVAGDDLYGGTDRL-------- 109
           ALE  LA+   A+RAL F+SG  A LA +T L G G+ IV+        D+L        
Sbjct: 88  ALEEELAEWFGAERALLFSSGYAANLAVLTALAGKGDLIVS--------DKLNHASLIDG 139

Query: 110 --LSRVTPKTGVVVKRVNTCDLDEVASAIGPWT---KLVWVESPTNPRQQICDIRKIAEM 164
             LSR        V+R    D+D + + +  W     L+  ES  +    +  + ++  +
Sbjct: 140 ARLSRAR------VRRYPHNDVDALEALLAKWRAGRALIVTESVFSMDGDLAPLAELVAL 193

Query: 165 AHAHGALLLVD 175
           A  HGA LLVD
Sbjct: 194 ARRHGAWLLVD 204

Length = 385

>gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 21/144 (14%)

Query: 76  FTSGM-----AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN----- 125
           FTSG          ++   L  G+EI+  +  +         +  +TG  V+ +      
Sbjct: 66  FTSGTTEAINLVAISLGRSLKPGDEILVTEMEHHANLVPWQELAKRTGATVRVIPVDPNG 125

Query: 126 TCDLDEVASAIGPWTKLV---WVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV 182
             DLD +   + P TKLV    V + T        + +I ++AH +GAL++VD +    V
Sbjct: 126 LLDLDALEKLLTPRTKLVAITHVSNVTGTVN---PVEEIGKLAHEYGALVVVDAA--QAV 180

Query: 183 LSRPL---ELGADIVMHSATKFIA 203
             RP+    LG D +  S  K   
Sbjct: 181 GHRPIDVQALGVDFLAFSGHKLYG 204

This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. Length = 370

>gnl|CDD|223234 COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

 Score = 52.3 bits (126), Expect = 7e-08
 Identities = 40/144 (27%), Positives = 58/144 (40%), Gaps = 36/144 (25%)

Query: 52  SGN-PTRDALESLLAKLDKADRALCFTSG-MAALAAVTHLLGTGEEIVAGDDLYGGTDRL 109
           SG       LE  LA    A+ AL F+SG +A L  ++ LL  G+ I +        D L
Sbjct: 80  SGTSDLHVELEEELADFLGAEAALLFSSGFVANLGLLSALLKKGDLIFS--------DEL 131

Query: 110 ----------LSRVTPKTGVVVKRVNTCDLDEVASAIGPWT------KLVWVES--PTNP 151
                     LSR        V+R    DLD + + +          KL+  E     + 
Sbjct: 132 NHASIIDGIRLSRAE------VRRFKHNDLDHLEALLEEARENGARRKLIVTEGVFSMDG 185

Query: 152 RQQICDIRKIAEMAHAHGALLLVD 175
              I  + ++ E+A  +GALL VD
Sbjct: 186 D--IAPLPELVELAEKYGALLYVD 207

Length = 388

>gnl|CDD|99746 cd06453, SufS_like, Cysteine desulfurase (SufS)-like

 Score = 52.1 bits (126), Expect = 8e-08
 Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 23/120 (19%)

Query: 116 KTGVVVKRV-----NTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA 170
           +TG  +K V        DL+ +   +   TKLV V   +N    I  +++I E+AH  G 
Sbjct: 111 RTGAKLKVVPVDDDGQLDLEALEKLLTERTKLVAVTHVSNVLGTINPVKEIGEIAHEAGV 170

Query: 171 LLLVDNSIMSPVLSRPL---ELGADIVMHSATKFIA--GHSDVMA---GVLAVKGERLAK 222
            +LVD +  +  +  P+   +LG D        F+A  GH  +     GVL  K E L +
Sbjct: 171 PVLVDGAQSAGHM--PVDVQDLGCD--------FLAFSGHKMLGPTGIGVLYGKEELLEE 220

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. Length = 373

>gnl|CDD|99739 cd00615, Orn_deC_like, Ornithine decarboxylase family

 Score = 49.9 bits (120), Expect = 4e-07
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 138 PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS-----IMSPVL-SRPLELGA 191
           P  K   + +PT       ++RKI E AH  G  +LVD +        P+L S     GA
Sbjct: 153 PDAKAAVITNPT-YYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMAGA 211

Query: 192 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 223
           DIV+ S  K +   +     ++ VKG+ +  +
Sbjct: 212 DIVVQSTHKTLPALT--QGSMIHVKGDLVNPD 241

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. Length = 294

>gnl|CDD|234769 PRK00451, PRK00451, glycine dehydrogenase subunit 1; Validated

 Score = 50.1 bits (121), Expect = 4e-07
 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 2/70 (2%)

Query: 126 TCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALL-LVDNSIMSPVLS 184
             DL+ + +A+   T  V V+ P N    I D+ +IAE+AHA GAL  +  + +   +L 
Sbjct: 191 VTDLEALEAAVDDDTAAVVVQYP-NFFGVIEDLEEIAEIAHAGGALFIVGVDPVSLGLLK 249

Query: 185 RPLELGADIV 194
            P E GADIV
Sbjct: 250 PPGEYGADIV 259

Length = 447

>gnl|CDD|223480 COG0403, GcvP, Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 3/123 (2%)

Query: 81  AALAAVTHLLGTGEEIVAGDDLYGGT-DRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 139
           A L A         + +   D++  T D L +R     G+ ++ V+  DLD++ SA    
Sbjct: 152 AMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGL-GIEIEVVDADDLDDLESADDGD 210

Query: 140 TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS-PVLSRPLELGADIVMHSA 198
              V V+ P        D+R + E AH+ GAL++V    ++  +L  P E GADIV+ SA
Sbjct: 211 VFGVLVQYPNTFGIVEEDLRALIEAAHSAGALVIVAADPLALGLLKPPGEFGADIVVGSA 270

Query: 199 TKF 201
            +F
Sbjct: 271 QRF 273

Length = 450

>gnl|CDD|129937 TIGR00858, bioF, 8-amino-7-oxononanoate synthase

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 29/131 (22%)

Query: 60  LESLLAKLDKADRALCFTSG-MAALAAVTHLLGTGEEIVAGDDLYGGTDRL--------- 109
           LE  LA+    + AL F+SG +A +  ++ L+G G+ I++        D L         
Sbjct: 66  LEEELAEWKGTEAALLFSSGYLANVGVISALVGKGDLILS--------DALNHASLIDGC 117

Query: 110 -LSRVTPKTGVVVKRVNTCDLDEVA----SAIGPWTKLVWVESPTNPRQQICDIRKIAEM 164
            LS         V+R    D++ +        G   KL+  +   +    I  + ++  +
Sbjct: 118 RLSGAR------VRRYRHNDVEHLERLLEKNRGERRKLIVTDGVFSMDGDIAPLPQLVAL 171

Query: 165 AHAHGALLLVD 175
           A  +GA L+VD
Sbjct: 172 AERYGAWLMVD 182

7-keto-8-aminopelargonic acid synthetase is an alternate name. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 360

>gnl|CDD|215460 PLN02855, PLN02855, Bifunctional selenocysteine lyase/cysteine desulfurase

 Score = 46.7 bits (111), Expect = 6e-06
 Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 14/111 (12%)

Query: 113 VTPKTGVVVKRVN-----TCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA 167
           V  KTG V+K V        D++++   +   TKLV     +N    I  +  I   AHA
Sbjct: 142 VAQKTGAVLKFVGLTPDEVLDVEQLKELLSEKTKLVATHHVSNVLGSILPVEDIVHWAHA 201

Query: 168 HGALLLVDNSIMSPVLSRPLE-LGADIVMHSATK--------FIAGHSDVM 209
            GA +LVD     P +   ++ LGAD ++ S+ K        F+ G SD++
Sbjct: 202 VGAKVLVDACQSVPHMPVDVQTLGADFLVASSHKMCGPTGIGFLWGKSDLL 252

Length = 424

>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 37/142 (26%), Positives = 54/142 (38%), Gaps = 28/142 (19%)

Query: 58  DALESLLAKL--------DKADRALCFTSGM-AALAAVTHLLG--TGEEIVAGDDLYGGT 106
             L   LAK            + A+ F SG  A + A+  LL    G+ I+     Y   
Sbjct: 44  PELREALAKFLGRSPVLKLDREAAVVFGSGAGANIEALIFLLRLNPGDAILVPAPTYPSY 103

Query: 107 DRLLSRVTPKTGVVVKRVN-------TCDLDEVASAIGPWT---KLVWVESPTNPRQQIC 156
            R+        G  V R           D D + +A+   T   K+V   SP NP   + 
Sbjct: 104 IRIFRL----AGGEVVRYPLYSSNDFHLDFDALEAALKEATEGNKVVLHTSPHNPTGTVA 159

Query: 157 ---DIRKIAEMAHAHGALLLVD 175
              ++ K+ ++A  H  LLLVD
Sbjct: 160 TLEELEKLLDLAKEHNILLLVD 181

Length = 357

>gnl|CDD|224832 COG1921, SelA, Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 49/177 (27%), Positives = 74/177 (41%), Gaps = 15/177 (8%)

Query: 57  RDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVA--GDDLYGGTDRLLSRVT 114
              L  LL  L  A+ A    +  AA+    + L  G+E+V   G+ + GG  R+   + 
Sbjct: 70  LTELAELLCGLTGAEAAAIVNNNAAAVLLTLNALAEGKEVVVSRGELVEGGAFRV-PDII 128

Query: 115 PKTG---VVVKRVNTCDLDEVASAIGPWTKLVW-VESPTNPRQQICDIRKIAEMAHAHGA 170
              G   V V   N   L +   AI   T L+  V S       +    ++ E+AH  G 
Sbjct: 129 RLAGAKLVEVGTTNRTHLKDYELAINENTALLLKVHSSNYGFTGMLSEEELVEIAHEKGL 188

Query: 171 LLLVDNSIMSPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK 222
            ++VD +  + V   P     L LGAD+V  S  K + G     AG++  K E + K
Sbjct: 189 PVIVDLASGALVDKEPDLREALALGADLVSFSGDKLLGG---PQAGIIVGKKELIEK 242

Length = 395

>gnl|CDD|224893 COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 12/73 (16%)

Query: 155 ICDIRKIAEMAHAHGALLLVDNSI--------MSPVLSRPLELGADIVMHSATKFIAGHS 206
             ++RKI E+ H +GA +L D +         M P  +  L  GAD V  S  K +A  S
Sbjct: 181 CYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESA--LNGGADFVTQSTHKLLAALS 238

Query: 207 DVMAGVLAVKGER 219
              A ++ VK  R
Sbjct: 239 --QASMIHVKDGR 249

Length = 557

>gnl|CDD|235292 PRK04366, PRK04366, glycine dehydrogenase subunit 2; Validated

 Score = 43.2 bits (103), Expect = 8e-05
 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 21/80 (26%)

Query: 128 DLDEVASAIGPWTKLVWVESPTNP-------RQQICDIRKIAEMAHAHGALLLVD----N 176
           DL+ + +A+G  T  + +   TNP       R    +I +IAE+ H  G LL  D    N
Sbjct: 197 DLEALKAAVGEDTAALML---TNPNTLGLFER----NILEIAEIVHEAGGLLYYDGANLN 249

Query: 177 SIMSPVLSRPLELGADIVMH 196
           +I+     RP ++G D V+H
Sbjct: 250 AILGKA--RPGDMGFD-VVH 266

Length = 481

>gnl|CDD|180404 PRK06108, PRK06108, aspartate aminotransferase; Provisional

 Score = 43.0 bits (102), Expect = 8e-05
 Identities = 41/150 (27%), Positives = 57/150 (38%), Gaps = 46/150 (30%)

Query: 55  PTRDAL----ESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRL 109
             R+AL      L       +R    +SG+ AL  A   L+G G+E+VA           
Sbjct: 65  ELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQALVGPGDEVVA----------- 113

Query: 110 LSRVTP----------KTGVVVKRVN--------TCDLDEVASAIGPWTKLVWVESPTNP 151
              VTP            G  V  V         T DLD + +AI P T+ +++ SP NP
Sbjct: 114 ---VTPLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAITPRTRALFINSPNNP 170

Query: 152 ------RQQICDIRKIAEMAHAHGALLLVD 175
                 R    D+R I      HG  ++ D
Sbjct: 171 TGWTASRD---DLRAILAHCRRHGLWIVAD 197

Length = 382

>gnl|CDD|236095 PRK07777, PRK07777, aminotransferase; Validated

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 19/108 (17%)

Query: 81  AALAAVTHLLGTGEEIVAGDDLY----------GGTDRLLSRVTPKTGVVVKRVNTCDLD 130
           A  AAV  L+  G+E++  +  Y          G     +  V    G  +      DLD
Sbjct: 97  AIAAAVLGLVEPGDEVLLIEPYYDSYAAVIAMAGAHRVPVPLVPDGRGFAL------DLD 150

Query: 131 EVASAIGPWTKLVWVESPTNPRQQIC---DIRKIAEMAHAHGALLLVD 175
            + +A+ P T+ + V SP NP   +    ++  IAE+A  H  L++ D
Sbjct: 151 ALRAAVTPRTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITD 198

Length = 387

>gnl|CDD|99737 cd00613, GDC-P, Glycine cleavage system P-protein, alpha- and beta-subunits

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 3/65 (4%)

Query: 157 DIRKIAEMAHAHGALLLVDNSIMS-PVLSRPLELGADIVMHSATKFIAGHS--DVMAGVL 213
            I++IA++AH+ GAL+ VD   ++   L  P E GADIV+ +  K    H      AG  
Sbjct: 177 LIKEIADIAHSAGALVYVDGDNLNLTGLKPPGEYGADIVVGNLQKTGVPHGGGGPGAGFF 236

Query: 214 AVKGE 218
           AVK E
Sbjct: 237 AVKKE 241

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <=> S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. Length = 398

>gnl|CDD|130884 TIGR01825, gly_Cac_T_rel, pyridoxal phosphate-dependent acyltransferase, putative

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 40/140 (28%), Positives = 60/140 (42%), Gaps = 4/140 (2%)

Query: 58  DALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT 117
           + LE  LAK  K + AL F SG      V   L    +IV  D+L   +     R+T  T
Sbjct: 81  EELEEKLAKFKKTEAALVFQSGFNTNQGVLSALLRKGDIVLSDELNHASIIDGLRLTKAT 140

Query: 118 GVVVKRVNTCDLDEVA-SAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDN 176
             + K  +  DLD V         KL+  +   +    +  + +I E+A  +GA+  VD+
Sbjct: 141 KKIYKHADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVAPLPEIVELAERYGAVTYVDD 200

Query: 177 SIMSPVLSRPLELGADIVMH 196
           +  S V+    E G   V H
Sbjct: 201 AHGSGVMG---EAGRGTVHH 217

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. Length = 385

>gnl|CDD|216367 pfam01212, Beta_elim_lyase, Beta-eliminating lyase

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 42/171 (24%), Positives = 72/171 (42%), Gaps = 24/171 (14%)

Query: 53  GNPTRDALESLLAKLDKADRALCFTSG-MAALAAVTHLLGTGEEIVAGDDLYGGTD---- 107
           G+PT + LE  +A+L   + AL   SG MA   A+      G+E++ G+  +   D    
Sbjct: 30  GDPTVNRLEDRVAELFGKEAALFVPSGTMANQLALMAHCRRGDEVICGEPAHIYFDETGG 89

Query: 108 -RLLSRVTPKTGVVVKRVNTCDLDEVASAI-------GPWTKLVWVESPTNPRQQIC--- 156
              L    P   +        DL+++ +AI        P T L+ +E+  N         
Sbjct: 90  HAELGGAQPVP-LPGAEAGKLDLEDLEAAIRPVGDIHFPPTGLISLENTHNSAGGQVVSL 148

Query: 157 -DIRKIAEMAHAHGALLLVD------NSIMSPVLSRPLELGADIVMHSATK 200
            ++R+I  +A  HG  L +D       ++   V+ + +   AD V  S +K
Sbjct: 149 EELREIRAIAREHGIPLHLDGARLANAAVALGVIVKEITSYADSVSMSLSK 199

Length = 288

>gnl|CDD|235432 PRK05367, PRK05367, glycine dehydrogenase; Provisional

 Score = 40.9 bits (97), Expect = 6e-04
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 154 QICDIRKIAEMAHAHGALLLVDNSIMSPVLSR-PLELGADIVMHSATKF 201
           ++ D   +   AHA GAL+ V   +++  L   P E+GADI + SA +F
Sbjct: 220 EVRDYTALIAAAHARGALVAVAADLLALTLLTPPGEMGADIAVGSAQRF 268

Length = 954

>gnl|CDD|216983 pfam02347, GDC-P, Glycine cleavage system P-protein

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 3/67 (4%)

Query: 155 ICDIRKIAEMAHAHGALLLVDNSIMSPVLSR-PLELGADIVMHSATKF--IAGHSDVMAG 211
           I D +++ E+AH HG+L++V   +++  + + P E GADIV+ SA +F    G+    AG
Sbjct: 212 IEDYKELIEIAHQHGSLVVVAADLLALTILKPPGEFGADIVVGSAQRFGVPMGYGGPHAG 271

Query: 212 VLAVKGE 218
             AVK E
Sbjct: 272 FFAVKEE 278

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalyzed by this protein is:- Glycine + lipoylprotein <=> S-aminomethyldihydrolipoylprotein + CO2. Length = 429

>gnl|CDD|223935 COG1003, GcvP, Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 7/44 (15%)

Query: 157 DIRKIAEMAHAHGALLLVD----NSIMSPVLSRPLELGADIVMH 196
           DIR+I E+ H  G  +  D    N+I+   L+RP ++G D V+H
Sbjct: 222 DIREICEIVHEAGGQVYYDGANLNAIVG--LARPGDMGFD-VVH 262

Length = 496

>gnl|CDD|181642 PRK09082, PRK09082, methionine aminotransferase; Validated

 Score = 40.3 bits (95), Expect = 7e-04
 Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 27/140 (19%)

Query: 55  PTRDALESLLAKLD----KADRALCFTSG--MAALAAVTHLLGTGEEIVAGDDLYGGTDR 108
             R+A+ +  A+L      AD  +  T+G   A  AA+  L+  G+E++  D  Y   D 
Sbjct: 71  ALREAIAAKTARLYGRQYDADSEITVTAGATEALFAAILALVRPGDEVIVFDPSY---DS 127

Query: 109 LLSRVTPKTGVVVK--------RVNTCDLDEVASAIGPWTKLVWVESPTNP-----RQQI 155
               +    G  V+        RV   D    A+AI P T+L+ + +P NP         
Sbjct: 128 YAPAIELAGGRAVRVALQPPDFRV---DWQRFAAAISPRTRLIILNTPHNPSGTVWSAA- 183

Query: 156 CDIRKIAEMAHAHGALLLVD 175
            D+R + ++       +L D
Sbjct: 184 -DMRALWQLIAGTDIYVLSD 202

Length = 386

>gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 22/125 (17%)

Query: 66  KLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGD---DLYGGTDRLLSRVTPKTGVVV 121
            +D  +  +       AL  A   LL  G+E++  D     Y    +L        G   
Sbjct: 85  DVDPEEEIIVTAGAKEALFLAFLALLNPGDEVLIPDPGYPSYEAAVKLA-------GGKP 137

Query: 122 KRVNTC--------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGA 170
             V           DL+++ +AI P TK + + SP NP   +     ++ I E+A  H  
Sbjct: 138 VPVPLDEEENGFKPDLEDLEAAITPKTKAIILNSPNNPTGAVYSKEELKAIVELAREHDI 197

Query: 171 LLLVD 175
           +++ D
Sbjct: 198 IIISD 202

Length = 393

>gnl|CDD|131034 TIGR01979, sufS, cysteine desulfurases, SufSfamily

 Score = 38.4 bits (90), Expect = 0.003
 Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 13/115 (11%)

Query: 116 KTGVVVK--RVN---TCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA 170
           +TG  +K   ++   T DLD++   +   TKLV +   +N    +  + +IA++AH  GA
Sbjct: 131 RTGATLKFIPLDDDGTLDLDDLEKLLTEKTKLVAITHVSNVLGTVNPVEEIAKLAHQVGA 190

Query: 171 LLLVDNSIMSPVLSRPL---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK 222
            +LVD +   P    P+    L  D  + S  K + G + +  GVL  K E L +
Sbjct: 191 KVLVDGAQAVP--HMPVDVQALDCDFYVFSGHK-MYGPTGI--GVLYGKEELLEQ 240

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 403

>gnl|CDD|223153 COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

 Score = 38.4 bits (90), Expect = 0.003
 Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 37/149 (24%)

Query: 78  SGMAAL-AAVTHLLGTGEEIVAGD------------DLYGGTDRLLSRVTPKTGVVVKRV 124
           SG  A+ AAV  L+  G++++               + YG    +L  V     V     
Sbjct: 64  SGTLAMEAAVASLVEPGDKVLVVVNGKFGERFAEIAERYGAEVVVL-EVEWGEAV----- 117

Query: 125 NTCDLDEVASAI--GPWTKLVWV---ESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIM 179
              D +EV  A+   P  K V V   E+ T        +++IA+ A  HGALL+VD ++ 
Sbjct: 118 ---DPEEVEEALDKDPDIKAVAVVHNETSTGVLN---PLKEIAKAAKEHGALLIVD-AVS 170

Query: 180 S----PVLSRPLELGADIVMHSATKFIAG 204
           S    P+  +  E G D+ +  + K +  
Sbjct: 171 SLGGEPL--KVDEWGIDVAITGSQKALGA 197

Length = 383

>gnl|CDD|162358 TIGR01437, selA_rel, uncharacterized pyridoxal phosphate-dependent enzyme

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 2/81 (2%)

Query: 125 NTCDLDEVASAIGPWT-KLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL 183
           N C  +++ +AI   T  +++++S    ++ +  +   A++A  H   L+VD +     L
Sbjct: 134 NECSAEQLEAAITEKTAAILYIKSHHCVQKSMLSVEDAAQVAQEHNLPLIVDAAAEED-L 192

Query: 184 SRPLELGADIVMHSATKFIAG 204
            +   LGAD+V++S  K I G
Sbjct: 193 QKYYRLGADLVIYSGAKAIEG 213

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation [Unknown function, Enzymes of unknown specificity]. Length = 363

>gnl|CDD|234269 TIGR03588, PseC, UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 36/135 (26%), Positives = 53/135 (39%), Gaps = 19/135 (14%)

Query: 55  PTRDALESLLAKLDKADRALCFTSGMAAL-AAVTHL-LGTGEEIV---------AGDDLY 103
           PT  A E  LA+   A  A+ F S  +AL  A   L +G G+ +          A   LY
Sbjct: 29  PTVPAFEEALAEYVGAKYAVAFNSATSALHIACLALGVGPGDRVWTTPITFVATANCALY 88

Query: 104 GGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAI-GPWTKLVWVESPTNPRQQICDIRKIA 162
            G       + P TG +       D D +   +     KL     P +   +  D++ IA
Sbjct: 89  CGAKVDFVDIDPDTGNI-------DEDALEKKLAAAKGKLPKAIVPVDFAGKSVDMQAIA 141

Query: 163 EMAHAHGALLLVDNS 177
            +A  HG  ++ D S
Sbjct: 142 ALAKKHGLKIIEDAS 156

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. Length = 380

>gnl|CDD|235064 PRK02731, PRK02731, histidinol-phosphate aminotransferase; Validated

 Score = 37.8 bits (89), Expect = 0.003
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 117 TGVVVKRVN-TCDLDEVASAIGPWTKLVWVESPTNP 151
             V V   +   DLD + +A+ P T+LV++ +P NP
Sbjct: 131 KPVEVPAKDYGHDLDAMLAAVTPRTRLVFIANPNNP 166

Length = 367

>gnl|CDD|233587 TIGR01821, 5aminolev_synth, 5-aminolevulinic acid synthase

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 13/125 (10%)

Query: 59  ALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLS------- 111
            LE+ LA L   + AL FTSG  A  A    L T  +I+ G  ++  +D L         
Sbjct: 94  ELEAELADLHGKESALVFTSGYVANDAT---LATLAKIIPGCVIF--SDELNHASMIEGI 148

Query: 112 RVTPKTGVVVKRVNTCDLDEVASAIGPWT-KLVWVESPTNPRQQICDIRKIAEMAHAHGA 170
           R +     + +  +   L+++  ++ P   K++  ES  +    I  I +I ++A  +GA
Sbjct: 149 RHSGAEKFIFRHNDVAHLEKLLQSVDPNRPKIIAFESVYSMDGDIAPIEEICDLADKYGA 208

Query: 171 LLLVD 175
           L  +D
Sbjct: 209 LTYLD 213

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 402

>gnl|CDD|134568 PRK01533, PRK01533, histidinol-phosphate aminotransferase; Validated

 Score = 37.7 bits (87), Expect = 0.004
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 128 DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAH--AHGALLLVDNSIMSPVLSR 185
           DLDE++S +   TK+VW+ +P NP     + RK+ +     +   L+++D +    V ++
Sbjct: 140 DLDEISSVVDNDTKIVWICNPNNPTGTYVNDRKLTQFIEGISENTLIVIDEAYYEYVTAK 199

Length = 366

>gnl|CDD|99745 cd06452, SepCysS, Sep-tRNA:Cys-tRNA synthase

 Score = 37.8 bits (88), Expect = 0.004
 Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 9/95 (9%)

Query: 129 LDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS----IMSPVLS 184
           ++EV    G    L  +         + D +KIA++ H +G  LL++ +     M PV  
Sbjct: 129 IEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGRM-PVSG 187

Query: 185 RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER 219
           +  ELGAD ++ S  K +A  + +  GVLA   E 
Sbjct: 188 K--ELGADFIVGSGHKSMAASAPI--GVLATTEEW 218

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. Length = 361

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	265
PRK08861	388	cystathionine gamma-synthase; Provisional	100.0
PLN02509	464	cystathionine beta-lyase	100.0
PRK08114	395	cystathionine beta-lyase; Provisional	100.0
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	100.0
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	100.0
PRK09028	394	cystathionine beta-lyase; Provisional	100.0
PRK05967	395	cystathionine beta-lyase; Provisional	100.0
PRK07671	377	cystathionine beta-lyase; Provisional	100.0
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	100.0
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	100.0
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	100.0
PRK08045	386	cystathionine gamma-synthase; Provisional	100.0
PRK08064	390	cystathionine beta-lyase; Provisional	100.0
PRK08247	366	cystathionine gamma-synthase; Reviewed	100.0
PRK07050	394	cystathionine beta-lyase; Provisional	100.0
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	100.0
PRK06767	386	methionine gamma-lyase; Provisional	100.0
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK08776	405	cystathionine gamma-synthase; Provisional	100.0
PRK07811	388	cystathionine gamma-synthase; Provisional	100.0
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	100.0
PRK07269	364	cystathionine gamma-synthase; Reviewed	100.0
PRK08574	385	cystathionine gamma-synthase; Provisional	100.0
PRK08249	398	cystathionine gamma-synthase; Provisional	100.0
PRK07503	403	methionine gamma-lyase; Provisional	100.0
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	100.0
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	100.0
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	100.0
PRK06234	400	methionine gamma-lyase; Provisional	100.0
KOG0053	409	consensus Cystathionine beta-lyases/cystathionine	100.0
PRK05939	397	hypothetical protein; Provisional	100.0
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	100.0
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK07582	366	cystathionine gamma-lyase; Validated	100.0
PRK07049	427	methionine gamma-lyase; Validated	100.0
PRK06460	376	hypothetical protein; Provisional	100.0
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	100.0
PLN02242	418	methionine gamma-lyase	100.0
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	100.0
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	100.0
PRK05968	389	hypothetical protein; Provisional	100.0
PRK06434	384	cystathionine gamma-lyase; Validated	100.0
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	99.97
KOG0257	420	consensus Kynurenine aminotransferase, glutamine t	99.96
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	99.95
PRK06207	405	aspartate aminotransferase; Provisional	99.95
PRK07681	399	aspartate aminotransferase; Provisional	99.94
PRK05942	394	aspartate aminotransferase; Provisional	99.94
PRK07324	373	transaminase; Validated	99.94
PRK06290	410	aspartate aminotransferase; Provisional	99.94
PLN00175	413	aminotransferase family protein; Provisional	99.94
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	99.94
PLN02187	462	rooty/superroot1	99.94
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	99.94
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	99.94
PLN02483	489	serine palmitoyltransferase	99.94
PRK05957	389	aspartate aminotransferase; Provisional	99.94
PRK08068	389	transaminase; Reviewed	99.93
PRK12414	384	putative aminotransferase; Provisional	99.93
PRK07366	388	succinyldiaminopimelate transaminase; Validated	99.93
PRK06348	384	aspartate aminotransferase; Provisional	99.93
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	99.93
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	99.93
PRK07179	407	hypothetical protein; Provisional	99.93
PRK08912	387	hypothetical protein; Provisional	99.93
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	99.93
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	99.93
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.93
PRK06108	382	aspartate aminotransferase; Provisional	99.93
PRK08960	387	hypothetical protein; Provisional	99.93
PLN02368	407	alanine transaminase	99.93
PRK08636	403	aspartate aminotransferase; Provisional	99.93
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	99.93
PRK09082	386	methionine aminotransferase; Validated	99.92
PRK07682	378	hypothetical protein; Validated	99.92
PRK09148	405	aminotransferase; Validated	99.92
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	99.92
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	99.92
PRK07550	386	hypothetical protein; Provisional	99.92
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	99.92
PLN02955	476	8-amino-7-oxononanoate synthase	99.92
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	99.92
PRK08361	391	aspartate aminotransferase; Provisional	99.92
PRK07777	387	aminotransferase; Validated	99.92
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	99.92
PRK06855	433	aminotransferase; Validated	99.92
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	99.92
PRK07683	387	aminotransferase A; Validated	99.92
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	99.92
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	99.92
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	99.92
PRK05764	393	aspartate aminotransferase; Provisional	99.92
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	99.92
PTZ00433	412	tyrosine aminotransferase; Provisional	99.92
PRK07309	391	aromatic amino acid aminotransferase; Validated	99.92
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	99.92
PRK08175	395	aminotransferase; Validated	99.92
PRK07337	388	aminotransferase; Validated	99.92
PLN02656	409	tyrosine transaminase	99.91
PRK06107	402	aspartate aminotransferase; Provisional	99.91
PRK13392	410	5-aminolevulinate synthase; Provisional	99.91
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	99.91
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	99.91
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	99.91
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	99.91
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	99.91
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	99.91
PRK09064	407	5-aminolevulinate synthase; Validated	99.91
PTZ00377	481	alanine aminotransferase; Provisional	99.91
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	99.91
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	99.91
PRK05839	374	hypothetical protein; Provisional	99.91
PRK08363	398	alanine aminotransferase; Validated	99.91
PTZ00376	404	aspartate aminotransferase; Provisional	99.91
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	99.91
PRK13393	406	5-aminolevulinate synthase; Provisional	99.91
PLN02822	481	serine palmitoyltransferase	99.91
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	99.9
PRK07568	397	aspartate aminotransferase; Provisional	99.9
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	99.9
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	99.9
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	99.9
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	99.9
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	99.9
KOG0259	447	consensus Tyrosine aminotransferase [Amino acid tr	99.9
PRK09265	404	aminotransferase AlaT; Validated	99.9
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	99.9
PRK00950	361	histidinol-phosphate aminotransferase; Validated	99.9
PRK02731	367	histidinol-phosphate aminotransferase; Validated	99.9
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	99.9
PRK01533	366	histidinol-phosphate aminotransferase; Validated	99.9
PLN02231	534	alanine transaminase	99.9
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	99.9
PRK06225	380	aspartate aminotransferase; Provisional	99.9
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	99.9
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	99.9
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	99.9
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	99.9
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	99.9
PRK09257	396	aromatic amino acid aminotransferase; Provisional	99.9
PRK06836	394	aspartate aminotransferase; Provisional	99.9
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	99.9
PRK09105	370	putative aminotransferase; Provisional	99.9
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	99.89
PRK03321	352	putative aminotransferase; Provisional	99.89
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	99.89
PRK10874	401	cysteine sulfinate desulfinase; Provisional	99.89
PRK08056	356	threonine-phosphate decarboxylase; Provisional	99.89
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	99.89
PLN02397	423	aspartate transaminase	99.89
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	99.89
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	99.89
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	99.89
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	99.89
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	99.89
PRK04311	464	selenocysteine synthase; Provisional	99.88
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	99.88
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	99.88
PRK09275	527	aspartate aminotransferase; Provisional	99.88
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	99.88
PRK06358	354	threonine-phosphate decarboxylase; Provisional	99.88
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	99.88
PRK08354	311	putative aminotransferase; Provisional	99.88
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	99.88
PRK07392	360	threonine-phosphate decarboxylase; Validated	99.88
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	99.88
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	99.88
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	99.88
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	99.88
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	99.88
PRK06425	332	histidinol-phosphate aminotransferase; Validated	99.87
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	99.87
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	99.87
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	99.87
PLN02409	401	serine--glyoxylate aminotransaminase	99.87
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	99.87
PRK02948	381	cysteine desulfurase; Provisional	99.87
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	99.87
KOG1549	428	consensus Cysteine desulfurase NFS1 [Amino acid tr	99.87
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	99.87
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	99.87
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	99.87
cd00609	350	AAT_like Aspartate aminotransferase family. This f	99.87
PLN02672	1082	methionine S-methyltransferase	99.86
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	99.86
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	99.86
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	99.86
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	99.86
PLN02651	364	cysteine desulfurase	99.86
PRK08637	388	hypothetical protein; Provisional	99.86
PRK14012	404	cysteine desulfurase; Provisional	99.85
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	99.85
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	99.85
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	99.85
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	99.85
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	99.85
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	99.85
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	99.85
PRK07908	349	hypothetical protein; Provisional	99.84
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	99.84
PLN02721	353	threonine aldolase	99.84
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	99.84
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	99.84
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	99.84
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	99.84
PRK13034	416	serine hydroxymethyltransferase; Reviewed	99.84
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	99.83
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	99.83
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	99.83
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	99.82
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	99.82
PRK07505	402	hypothetical protein; Provisional	99.82
KOG1359	417	consensus Glycine C-acetyltransferase/2-amino-3-ke	99.81
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	99.81
KOG1360	570	consensus 5-aminolevulinate synthase [Coenzyme tra	99.81
KOG0256	471	consensus 1-aminocyclopropane-1-carboxylate syntha	99.8
KOG1357	519	consensus Serine palmitoyltransferase [Posttransla	99.8
TIGR01814	406	kynureninase kynureninase. This model describes ky	99.79
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	99.79
PRK10534	333	L-threonine aldolase; Provisional	99.79
PRK01278	389	argD acetylornithine transaminase protein; Provisi	99.79
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	99.79
PRK03244	398	argD acetylornithine aminotransferase; Provisional	99.78
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	99.78
PRK04366	481	glycine dehydrogenase subunit 2; Validated	99.78
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	99.78
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	99.77
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	99.76
PRK02627	396	acetylornithine aminotransferase; Provisional	99.76
PRK00451	447	glycine dehydrogenase subunit 1; Validated	99.75
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	99.75
PRK02936	377	argD acetylornithine aminotransferase; Provisional	99.74
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	99.74
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	99.74
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.73
PRK13520	371	L-tyrosine decarboxylase; Provisional	99.73
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	99.73
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	99.73
PRK02769	380	histidine decarboxylase; Provisional	99.72
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	99.72
KOG0634	472	consensus Aromatic amino acid aminotransferase and	99.7
PTZ00125	400	ornithine aminotransferase-like protein; Provision	99.7
PRK13580	493	serine hydroxymethyltransferase; Provisional	99.67
PTZ00094	452	serine hydroxymethyltransferase; Provisional	99.67
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	99.66
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	99.65
PLN02724	805	Molybdenum cofactor sulfurase	99.65
PLN03032	374	serine decarboxylase; Provisional	99.65
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	99.65
KOG1368	384	consensus Threonine aldolase [Amino acid transport	99.65
PRK15029	755	arginine decarboxylase; Provisional	99.65
PLN03226	475	serine hydroxymethyltransferase; Provisional	99.63
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	99.62
PRK03080	378	phosphoserine aminotransferase; Provisional	99.61
PLN02624	474	ornithine-delta-aminotransferase	99.61
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	99.61
PRK03715	395	argD acetylornithine transaminase protein; Provisi	99.61
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.61
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	99.6
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	99.6
PLN02271	586	serine hydroxymethyltransferase	99.6
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	99.59
PRK05367	954	glycine dehydrogenase; Provisional	99.58
PRK13237	460	tyrosine phenol-lyase; Provisional	99.57
PRK04260	375	acetylornithine aminotransferase; Provisional	99.56
PRK05367	954	glycine dehydrogenase; Provisional	99.54
COG3844	407	Kynureninase [Amino acid transport and metabolism]	99.54
PRK13578	720	ornithine decarboxylase; Provisional	99.54
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	99.53
PLN00144	382	acetylornithine transaminase	99.53
PRK12566	954	glycine dehydrogenase; Provisional	99.52
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	99.52
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	99.51
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	99.51
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	99.51
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	99.51
KOG1358	467	consensus Serine palmitoyltransferase [Posttransla	99.5
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	99.5
PRK04612	408	argD acetylornithine transaminase protein; Provisi	99.5
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	99.49
KOG2862	385	consensus Alanine-glyoxylate aminotransferase AGT1	99.49
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	99.48
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.48
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	99.48
PRK08088	425	4-aminobutyrate aminotransferase; Validated	99.47
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	99.47
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	99.47
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	99.45
KOG0633	375	consensus Histidinol phosphate aminotransferase [A	99.44
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	99.43
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	99.42
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	99.42
PLN02263	470	serine decarboxylase	99.42
PRK15400	714	lysine decarboxylase CadA; Provisional	99.42
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	99.4
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	99.4
PRK15399	713	lysine decarboxylase LdcC; Provisional	99.39
PRK09792	421	4-aminobutyrate transaminase; Provisional	99.39
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	99.39
PLN02880	490	tyrosine decarboxylase	99.38
PLN02760	504	4-aminobutyrate:pyruvate transaminase	99.38
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	99.38
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	99.38
PRK07046	453	aminotransferase; Validated	99.38
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	99.37
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	99.37
PRK06541	460	hypothetical protein; Provisional	99.37
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	99.37
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	99.37
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	99.37
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	99.36
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	99.35
KOG0258	475	consensus Alanine aminotransferase [Amino acid tra	99.33
PLN02590	539	probable tyrosine decarboxylase	99.33
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	99.33
PRK12403	460	putative aminotransferase; Provisional	99.32
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	99.31
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	99.31
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	99.31
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	99.31
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	99.3
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	99.3
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	99.3
PRK06105	460	aminotransferase; Provisional	99.29
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	99.29
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.29
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	99.28
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	99.27
PRK06149	972	hypothetical protein; Provisional	99.27
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	99.27
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	99.27
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	99.27
PF04864	363	Alliinase_C: Allinase; InterPro: IPR006948 Allicin	99.26
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	99.26
PRK07678	451	aminotransferase; Validated	99.23
PRK06062	451	hypothetical protein; Provisional	99.22
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	99.19
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	99.18
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	99.17
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	99.16
PRK07480	456	putative aminotransferase; Validated	99.15
PRK12566	954	glycine dehydrogenase; Provisional	99.14
PRK05965	459	hypothetical protein; Provisional	99.13
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	99.13
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	99.12
PRK07482	461	hypothetical protein; Provisional	99.12
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	99.12
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	99.11
PRK07481	449	hypothetical protein; Provisional	99.11
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	99.1
PRK06148	1013	hypothetical protein; Provisional	99.09
PRK07036	466	hypothetical protein; Provisional	99.06
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	99.06
COG4100	416	Cystathionine beta-lyase family protein involved i	99.06
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	99.06
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	99.06
PRK06917	447	hypothetical protein; Provisional	99.05
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	99.03
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	99.02
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	99.02
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	99.02
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	98.99
PRK07483	443	hypothetical protein; Provisional	98.98
KOG1402	427	consensus Ornithine aminotransferase [Amino acid t	98.95
PLN02452	365	phosphoserine transaminase	98.91
KOG1401	433	consensus Acetylornithine aminotransferase [Amino	98.91
PRK08297	443	L-lysine aminotransferase; Provisional	98.84
PRK12462	364	phosphoserine aminotransferase; Provisional	98.82
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	98.81
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	98.81
KOG1404	442	consensus Alanine-glyoxylate aminotransferase AGT2	98.74
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	98.7
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	98.63
KOG3846	465	consensus L-kynurenine hydrolase [Amino acid trans	98.61
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	98.61
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	98.47
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	98.29
KOG2467	477	consensus Glycine/serine hydroxymethyltransferase	98.25
KOG1412	410	consensus Aspartate aminotransferase/Glutamic oxal	98.18
KOG1383	491	consensus Glutamate decarboxylase/sphingosine phos	98.08
KOG0629	510	consensus Glutamate decarboxylase and related prot	97.99
KOG1403	452	consensus Predicted alanine-glyoxylate aminotransf	97.97
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	97.96
PLN02994	153	1-aminocyclopropane-1-carboxylate synthase	97.95
KOG1411	427	consensus Aspartate aminotransferase/Glutamic oxal	97.63
KOG0628	511	consensus Aromatic-L-amino-acid/L-histidine decarb	97.0
COG1932	365	SerC Phosphoserine aminotransferase [Coenzyme meta	96.97
KOG1405	484	consensus 4-aminobutyrate aminotransferase [Amino	96.54
KOG3843	432	consensus Predicted serine hydroxymethyltransferas	92.48
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	88.95
PLN00191	457	enolase	86.21
PLN02672	1082	methionine S-methyltransferase	85.18
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	81.49
KOG2790	370	consensus Phosphoserine aminotransferase [Coenzyme	80.71
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	80.21
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	80.12
TIGR01060	425	eno phosphopyruvate hydratase. Alternate name: eno	80.07

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=1.3e-38  Score=278.27  Aligned_cols=261  Identities=38%  Similarity=0.601  Sum_probs=230.2

Q ss_pred             CCCCCcceeEeeccCC-CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHH
Q 024619            4 EEEPGVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAA   82 (265)
Q Consensus         4 ~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~a   82 (265)
                      |++.+.++..++.+.. .+..+...||++++.++..+.......|.|+|.|+|..+.+++.++++.|.+.++++++|++|
T Consensus         1 ~~~~~~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~Y~R~~npt~~~Le~~lA~leg~e~ivvt~gg~~A   80 (388)
T PRK08861          1 MSTRKPATIAVRTGIESDSQYHAVVPPIYLSTNYGFPAFGEVPKYDYTRSGNPNRGLLEQTLSELESGKGAVVTNCGTSA   80 (388)
T ss_pred             CCCCCcccceeECCCCCCCCCCCccCCcccCcceEeCCcCccCCccccCCCCchHHHHHHHHHHHhCCCeEEEECCHHHH
Confidence            4455667778887732 334688999999999987666544456889999999999999999999999989999999999


Q ss_pred             HH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHH
Q 024619           83 LA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKI  161 (265)
Q Consensus        83 l~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i  161 (265)
                      +. +++.++++||+|+++.|.|++....+....+..|+++..++..|++++++++.+++++|++++|+||||.+.|+++|
T Consensus        81 i~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~i~~~tklV~lesP~NPtG~v~dl~~I  160 (388)
T PRK08861         81 LNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQSDAAALDAALAKKPKLILLETPSNPLVRVVDIAEL  160 (388)
T ss_pred             HHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCcccCHHHH
Confidence            96 67778999999999999998776666555667789999999889999999998899999999999999999999999


Q ss_pred             HHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHH
Q 024619          162 AEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCW  241 (265)
Q Consensus       162 ~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (265)
                      .++|+++|+++++|++|+.+....+.+.+.|+++.|++||++|+.++++|+++.+++.+.+.....+...+..++|.++|
T Consensus       161 ~~la~~~gi~vIvDea~~~~~~~~pl~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~~~G~~~~p~~a~  240 (388)
T PRK08861        161 CQKAKAVGALVAVDNTFLTPVLQKPLELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSY  240 (388)
T ss_pred             HHHHHHcCCEEEEECCccccccCCCcccCCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHHHhccCCCCChHHHH
Confidence            99999999999999999998887888889999999999999999989999998877777777777788889999999999


Q ss_pred             HHHhccCchHhhHHHHhhchhcc
Q 024619          242 ICLRGVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       242 ~~~~~l~~~~~~~~~~~~~~~~l  264 (265)
                      +++++|+++..|++++.+|+.++
T Consensus       241 l~~rgl~Tl~lR~~~~~~~a~~~  263 (388)
T PRK08861        241 MTLRGIRTLGARMRVHEESAQQI  263 (388)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999865

>PLN02509 cystathionine beta-lyase

Probab=100.00  E-value=2.8e-37  Score=274.19  Aligned_cols=259  Identities=84%  Similarity=1.270  Sum_probs=229.7

Q ss_pred             CCCcceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHHH
Q 024619            6 EPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAA   85 (265)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~~   85 (265)
                      ++..++..++.+...+..+...+|++++.++..+.......+.|++.|+|.+++++++++++.|.+.++++++|++++.+
T Consensus        84 ~~~~~t~~~~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~Y~r~gnpt~~aLE~~lA~leg~e~ai~~~SG~aAi~~  163 (464)
T PLN02509         84 EASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLAKLDKADRAFCFTSGMAALSA  163 (464)
T ss_pred             CCCcchHheeCCCCCCCCCCccCCccccceecCccccccCCCccCCCCCHHHHHHHHHHHHHhCCCEEEEeCcHHHHHHH
Confidence            56666778888743355789999999999987666555567889999999999999999999999999999999988876


Q ss_pred             HHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHH
Q 024619           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA  165 (265)
Q Consensus        86 ~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a  165 (265)
                      +..++++||+|+++++.|+++...+...+...|++++.++..|++++++++.+++++|++++|+||+|.+.|+++|+++|
T Consensus       164 il~ll~~GD~VI~~~~~y~~t~~ll~~~l~~~G~~v~~vd~~d~e~l~~ai~~~TklV~lesPsNPtG~i~Dl~~I~~lA  243 (464)
T PLN02509        164 VTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTNLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKIAEMA  243 (464)
T ss_pred             HHHHhCCCCEEEEcCCchhhHHHHHHHHHHHCCeEEEEeCCCCHHHHHHhCCcCCeEEEEECCCCCCCCHHHHHHHHHHH
Confidence            66789999999999999999876666666788999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHh
Q 024619          166 HAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR  245 (265)
Q Consensus       166 ~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (265)
                      +++|+++++|++|+.+....+...+.|++++|++||++|++++.+|+++.+++.+.+..+..+...+..+++..+|++++
T Consensus       244 k~~g~~lIVD~A~a~~~~~~pl~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~~~g~~l~p~~A~l~lr  323 (464)
T PLN02509        244 HAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLR  323 (464)
T ss_pred             HHcCCEEEEECCccccccCChhhcCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHHHHHhcCCCcCHHHHHHHHh
Confidence            99999999999999888887888899999999999999988888999998777776666677777778899999999999


Q ss_pred             ccCchHhhHHHHhhchhcc
Q 024619          246 GVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       246 ~l~~~~~~~~~~~~~~~~l  264 (265)
                      +|+++..|++++++|+..+
T Consensus       324 ~L~tL~~R~~r~~~nA~~l  342 (464)
T PLN02509        324 GIKTMALRIEKQQENARKI  342 (464)
T ss_pred             hhhhHHHHHHHHHHHHHHH
Confidence            9999999999999998764

>PRK08114 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=4.5e-37  Score=267.75  Aligned_cols=260  Identities=23%  Similarity=0.376  Sum_probs=227.5

Q ss_pred             CCCCCcceeEeeccCCCC-CCCCCCCCeeeccccccCCCC--------C-CCCCccCCCCChhHHHHHHHHHhHhCCCce
Q 024619            4 EEEPGVSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSAT--------E-NGPYDYTRSGNPTRDALESLLAKLDKADRA   73 (265)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~--------~-~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~   73 (265)
                      |.+.+.++..++.+...+ ..|...||++++.++..+...        . ...|.|+|.|+|.++.+++.++++.|.+.+
T Consensus         1 ~~~~~~~t~~~~~~~~~~~~~~~v~~pi~~sstf~f~~~~~~~~~~~~~~~~~~~YsR~~nPt~~~le~~la~LEg~~~a   80 (395)
T PRK08114          1 MTDKKLDTQLVNAGRSKKYTQGSVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSLQEAMCELEGGAGC   80 (395)
T ss_pred             CCCCCcchheEeCCCCCCCCCCCccCCeeCCCceecCCHHHHHHhhccCcCCCccccCCCChhHHHHHHHHHHHhCCCeE
Confidence            345566677888773233 348999999999987554321        1 134889999999999999999999999999


Q ss_pred             EEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCc
Q 024619           74 LCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPR  152 (265)
Q Consensus        74 i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~  152 (265)
                      ++++||++|+. +++.++++||+|++++..|.+....+...++..|+++.+++..|.+++++++++++++|++++|+||+
T Consensus        81 ~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~~d~~~l~~~l~~~TrlV~~EtpsNp~  160 (395)
T PRK08114         81 ALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWFDPLIGADIAKLIQPNTKVVFLESPGSIT  160 (395)
T ss_pred             EEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCCCceEEEEECCCCCC
Confidence            99999999996 67888999999999999999998887777788999999999999999999999999999999999999


Q ss_pred             cccccHHHHHHHHHHcC--CEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHh
Q 024619          153 QQICDIRKIAEMAHAHG--ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA  230 (265)
Q Consensus       153 G~~~~l~~i~~~a~~~~--~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~  230 (265)
                      |.+.|+++|+++||++|  +++++|.+++.+...++.+.|+|+++.|.+||++|++.+.+|+++.+++ ..+.+......
T Consensus       161 ~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~~~pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~-~~~~l~~~~~~  239 (395)
T PRK08114        161 MEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVLFKALDFGIDISIQAGTKYLVGHSDAMIGTAVANAR-CWEQLRENSYL  239 (395)
T ss_pred             CEeecHHHHHHHHHHhCCCCEEEEECCCccccccCHHHcCCcEEEEcCcccccCCCcceeEEEEcCHH-HHHHHHHHHHh
Confidence            99999999999999984  9999999999999999999999999999999999999999998876554 44555566677


Q ss_pred             ccCCCChhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619          231 EGSGLAPFDCWICLRGVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       231 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l  264 (265)
                      .|..++|..+|+++++|+++..|++++.+|+..+
T Consensus       240 ~G~~~~p~~a~l~~rgl~TL~lR~~~~~~na~~v  273 (395)
T PRK08114        240 MGQMVDADTAYMTSRGLRTLGVRLRQHEESSLKV  273 (395)
T ss_pred             ccCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence            8899999999999999999999999999999865

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=100.00  E-value=8.8e-37  Score=262.57  Aligned_cols=259  Identities=47%  Similarity=0.774  Sum_probs=237.5

Q ss_pred             CCCcceeEeeccCCC-CCCCCCCCCeeeccccccCCCCC--------CCCCccCCCCChhHHHHHHHHHhHhCCCceEEe
Q 024619            6 EPGVSTLLMNFSNEF-DPYGALSTPLYQTATFKQPSATE--------NGPYDYTRSGNPTRDALESLLAKLDKADRALCF   76 (265)
Q Consensus         6 ~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~--------~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~   76 (265)
                      ....++.+++.+... +..|...+|++++.++..+....        ...+.|+|.|+|.++.+++.++.+.|.+..+.+
T Consensus         5 ~~~~~T~~v~~g~~~~~~~gav~~PI~~tStf~~~~~~~~~~~~~~~~~~~~Y~R~~nPT~~~lE~~~a~LEg~~~~~af   84 (396)
T COG0626           5 KLSLTTRLVHAGRRPDDLTGAVNPPIYLTSTFVFDSAGEGLDAFAGEEGGYDYSRTGNPTRDALEEALAELEGGEDAFAF   84 (396)
T ss_pred             ccccceeeEEcccccccCCCcccCCeeeeeeecccChhhhhhhccccccCcccccCCCccHHHHHHHHHHhhCCCcEEEe
Confidence            456778999998534 57999999999999987665432        467999999999999999999999999999999


Q ss_pred             cchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcC-CCceEEEEecCCCCccc
Q 024619           77 TSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG-PWTKLVWVESPTNPRQQ  154 (265)
Q Consensus        77 ~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~-~~~~~i~~~~~~np~G~  154 (265)
                      +||++|+. +++.++++||+|++.+..|.+..+.+....++.|+++.+++..+.+++++++. +++++|+++.|.||+..
T Consensus        85 sSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~  164 (396)
T COG0626          85 SSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLE  164 (396)
T ss_pred             cCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccc
Confidence            99999996 68999999999999999999999999999999999999999988888888887 59999999999999999


Q ss_pred             cccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHH-hccC
Q 024619          155 ICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN-AEGS  233 (265)
Q Consensus       155 ~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~-~~~~  233 (265)
                      +.|+++|+++|+++|+++++|++++.+.+..|++.|+||++.|.+|+++|+..+++|+++.+++.+.+.+...+. ..+.
T Consensus       165 v~DI~~i~~~A~~~g~~vvVDNTfatP~~q~PL~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~~~G~  244 (396)
T COG0626         165 VPDIPAIARLAKAYGALVVVDNTFATPVLQRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTGA  244 (396)
T ss_pred             cccHHHHHHHHHhcCCEEEEECCcccccccChhhcCCCEEEEeccccccCCcceeeeEEecChHHHHHHHHHHHHhhcCC
Confidence            999999999999999999999999999999999999999999999999999999999888888888887766666 5899


Q ss_pred             CCChhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619          234 GLAPFDCWICLRGVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       234 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l  264 (265)
                      .++|.++|+++|+||++..|++++.+|++.+
T Consensus       245 ~l~p~dA~l~lRGlkTL~~Rm~~~~~nA~~I  275 (396)
T COG0626         245 VLSPFDAWLLLRGLRTLALRMERHNENALKI  275 (396)
T ss_pred             CCCHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999865

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=100.00  E-value=1.7e-36  Score=265.40  Aligned_cols=254  Identities=72%  Similarity=1.102  Sum_probs=222.6

Q ss_pred             eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHHHHHHhc
Q 024619           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLL   90 (265)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~~~~~~~   90 (265)
                      +..++-+...++.|...||++++.++..+....+..+.|+|.|+|.++++++.+++++|.++.+++++|++|+.+++.++
T Consensus         3 t~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~Y~r~~~p~~~~le~~la~l~g~~~~l~~~sG~~al~~~l~ll   82 (378)
T TIGR01329         3 TLLVNTDNKNDPYDASSMPIYQTATFKQPLAIENGPYDYTRSGNPTRTALESLLAKLDKADRAFAFSSGMAALDVITRLL   82 (378)
T ss_pred             ceeEeCCCCCCCCCCcCCCeecCcceecCCccccCCCccCCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHh
Confidence            34455552234468889999999998766544455788999999999999999999999999999999998887666688


Q ss_pred             CCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCC
Q 024619           91 GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA  170 (265)
Q Consensus        91 ~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~  170 (265)
                      ++||+|+++++.|+++...+...++..|+++++++..|++++++++++++++|++++|+||+|.+.|+++|+++|+++|+
T Consensus        83 ~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~~~g~  162 (378)
T TIGR01329        83 NNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDTTDLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNA  162 (378)
T ss_pred             CCCCEEEEcCCCchHHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHHHcCC
Confidence            99999999999999988777667788999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccCch
Q 024619          171 LLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM  250 (265)
Q Consensus       171 ~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  250 (265)
                      ++++|++|+.+....+...+.|++++|++|+++|++++++|+++.+++.+.+.....+...+..+++..+++++++++++
T Consensus       163 ~vivD~a~~~~~~~~~l~~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~~~~l~tl  242 (378)
T TIGR01329       163 LVVVDNTMMSPLLCNPLELGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGSGLAPFDCWLLLRGIKTL  242 (378)
T ss_pred             EEEEECCCcccccCChhhcCCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHHhcCCcCCHHHHHHHHccCCCH
Confidence            99999999888777777889999999999999998888899999887777666666666678889999999999999999


Q ss_pred             HhhHHHHhhchhcc
Q 024619          251 ALRVEKQQVCFFDL  264 (265)
Q Consensus       251 ~~~~~~~~~~~~~l  264 (265)
                      ..|++++..|+..+
T Consensus       243 ~~R~e~~~~na~~l  256 (378)
T TIGR01329       243 AIRIEKQQENARAI  256 (378)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998754

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK09028 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=1.7e-36  Score=264.85  Aligned_cols=255  Identities=26%  Similarity=0.464  Sum_probs=219.9

Q ss_pred             cceeEeeccCCCC-CCCCCCCCeeeccccccCCCC--------C-CCCCccCCCCChhHHHHHHHHHhHhCCCceEEecc
Q 024619            9 VSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSAT--------E-NGPYDYTRSGNPTRDALESLLAKLDKADRALCFTS   78 (265)
Q Consensus         9 ~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~--------~-~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~   78 (265)
                      .++..++.+...+ ..|...+|++++.++..+...        . ...+.|+|.++|...++++.++++.+.+++++++|
T Consensus         5 ~~t~~~~~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~~Y~r~~npt~~~Le~~iA~le~~~~~~~~~s   84 (394)
T PRK09028          5 KATKIVSAGRDKKWTKGVINPPVFRASTVVFDTVAEMRHAAKNRANGEMFYGRRGTPTHFAFQAAIVELEGGAGTALYPS   84 (394)
T ss_pred             ccceeEEcCCCCCCCCCCccCCeeCCCCcccCCHHHHHHHhccCccCCceecCCCCchHHHHHHHHHHHhCCCcEEEECC
Confidence            3466777762233 348899999999998654421        1 13477999999999999999999999888999999


Q ss_pred             hHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCcccccc
Q 024619           79 GMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD  157 (265)
Q Consensus        79 g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~  157 (265)
                      |++|+. ++.+++++||+|++.+|.|+++...+...++..|+++..++..+.+.+++++.+++++|++++|+||+|.+.|
T Consensus        85 G~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~~~~e~l~~~l~~~TklV~lespsNPtg~v~d  164 (394)
T PRK09028         85 GAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFGIETTYYDPMIGEGIRELIRPNTKVLFLESPGSITMEVQD  164 (394)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhhcceEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCcHHH
Confidence            999986 7788899999999999999888876656667899999999887888999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCCh
Q 024619          158 IRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP  237 (265)
Q Consensus       158 l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~  237 (265)
                      +++|+++|+++|+++++|++|+.+....|.+.|+|+++.|++||++|++++++|+++.++ ...+.+...+...+..++|
T Consensus       165 l~~I~~la~~~g~~lvvD~t~a~p~~~~Pl~~GaDivv~S~tK~l~Gh~d~~~G~~~~~~-~~~~~l~~~~~~~G~~~~p  243 (394)
T PRK09028        165 VPTLSRIAHEHDIVVMLDNTWASPINSRPFEMGVDISIQAATKYIVGHSDVMLGTATANE-KHWDQLREHSYLMGQCTSP  243 (394)
T ss_pred             HHHHHHHHHHcCCEEEEECCccccccCCccccCceEEEEeCCeEecCCCCEEEEEEECCH-HHHHHHHHHHHhcCCCCCH
Confidence            999999999999999999999998888899999999999999999999999999876544 4445455566677899999


Q ss_pred             hHHHHHHhccCchHhhHHHHhhchhcc
Q 024619          238 FDCWICLRGVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       238 ~~~~~~~~~l~~~~~~~~~~~~~~~~l  264 (265)
                      .++|+++++|+++..|++++.+|+..+
T Consensus       244 ~~a~l~~rgl~TL~lR~~~~~~na~~l  270 (394)
T PRK09028        244 DDVYLAMRGLRTLGVRLAQHEKNALKV  270 (394)
T ss_pred             HHHHHHHcccCcHHHHHHHHHHHHHHH
Confidence            999999999999999999999999865

>PRK05967 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=2.2e-36  Score=263.67  Aligned_cols=255  Identities=30%  Similarity=0.467  Sum_probs=224.0

Q ss_pred             cceeEeeccC-CCCCCCCCCCCeeeccccccCCCC----CCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHH
Q 024619            9 VSTLLMNFSN-EFDPYGALSTPLYQTATFKQPSAT----ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL   83 (265)
Q Consensus         9 ~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al   83 (265)
                      .++..++.+. ..++.|...+|++++.++..+...    ....|.|+|.|+|.++.+++.++.+.+.+..+++++|++|+
T Consensus        13 ~~t~~~~~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~y~YsR~gnPt~~~Le~~la~le~~~~~v~~sSG~aAi   92 (395)
T PRK05967         13 INTRLAHDGNDPGDYHGFVNPPVVHASTVLFPDAETMATRGQKYTYGTRGTPTTDALCKAIDALEGSAGTILVPSGLAAV   92 (395)
T ss_pred             cccceeeCCCCCCCCCCCccCCccCCcceecCChHHhhcccCCCccCCCCChHHHHHHHHHHHHhCCCCEEEECcHHHHH
Confidence            3466777762 234578999999999998655432    23468899999999999999999999888899999999998


Q ss_pred             H-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHH
Q 024619           84 A-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIA  162 (265)
Q Consensus        84 ~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~  162 (265)
                      . +++.++++||+|+++++.|+++...+...++..|+++..++..+.+.+++++++++++|++++|+||++.+.|+++|+
T Consensus        93 ~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~~~e~l~~al~~~TklV~lesPsNP~l~v~dl~~I~  172 (395)
T PRK05967         93 TVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYDPEIGAGIAKLMRPNTKVVHTEAPGSNTFEMQDIPAIA  172 (395)
T ss_pred             HHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCeEEEEeCCCCHHHHHHhcCcCceEEEEECCCCCCCcHHHHHHHH
Confidence            6 778899999999999999999987776778899999999998888899999999999999999999999999999999


Q ss_pred             HHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHH
Q 024619          163 EMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI  242 (265)
Q Consensus       163 ~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (265)
                      ++|+++|+++++|++|+.+....|.+.|.|+++.|++|+++|++++++|+++.+++ ..+.+.......+..++|.++|+
T Consensus       173 ~la~~~g~~vvVD~t~a~p~~~~pl~~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~-~~~~l~~~~~~~G~~~~p~da~l  251 (395)
T PRK05967        173 EAAHRHGAIVMMDNTWATPLYFRPLDFGVDISIHAATKYPSGHSDILLGTVSANEK-CWPQLLEAHGTLGLCAGPDDTYQ  251 (395)
T ss_pred             HHHHHhCCEEEEECCccCceecChhHcCCCEEEEecccccCCCCCeeEEEEEcCHH-HHHHHHHHHHHcCCCCCHHHHHH
Confidence            99999999999999999988888999999999999999999999999998876554 44445556667788999999999


Q ss_pred             HHhccCchHhhHHHHhhchhcc
Q 024619          243 CLRGVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       243 ~~~~l~~~~~~~~~~~~~~~~l  264 (265)
                      ++++++++..|++++.+|+..+
T Consensus       252 ~~rgl~Tl~lR~~~~~~na~~l  273 (395)
T PRK05967        252 ILRGLRTMGIRLEHHRKSALEI  273 (395)
T ss_pred             HHcCcccHHHHHHHHHHHHHHH
Confidence            9999999999999999998765

>PRK07671 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=1e-35  Score=260.29  Aligned_cols=255  Identities=44%  Similarity=0.734  Sum_probs=224.0

Q ss_pred             ceeEeeccCC-CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHHHHHH
Q 024619           10 STLLMNFSNE-FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTH   88 (265)
Q Consensus        10 ~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~~~~~   88 (265)
                      ++..++-+.. ....|...||++++.++..+.......+.|++.++|...++++.++++.|.+..+++++|+.++.+++.
T Consensus         4 ~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~y~r~~~p~~~~Le~~lA~l~g~~~~~~~~sG~aai~~~~~   83 (377)
T PRK07671          4 KTKLIHGGIIGDPSTGAVSVPIYQVSTYKQEAVGKHQGYEYSRTGNPTRAALEELIAVLEGGHAGFAFGSGMAAITAVMM   83 (377)
T ss_pred             ccceeeCCCCCCCCCCCccCCccCCcceecCCCCCcCCCCcCCCCChHHHHHHHHHHHHhCCCceEEeCCHHHHHHHHHH
Confidence            4556776622 233688999999999987665444456889999999999999999999999999999999988876667


Q ss_pred             hcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHc
Q 024619           89 LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH  168 (265)
Q Consensus        89 ~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~  168 (265)
                      ++++||+|++++|.|++....+...++..|++++.++..|++++++++.+++++|++++|+||+|.+.|+++|.++|+++
T Consensus        84 ~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~ai~~~tklV~le~P~NPtg~~~dl~~I~~la~~~  163 (377)
T PRK07671         84 LFSSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDTSNLEEVEEAIRPNTKAIYVETPTNPLLKITDIKKISTIAKEK  163 (377)
T ss_pred             HhCCCCEEEECCCccchHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHc
Confidence            89999999999999997766666667889999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619          169 GALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       169 ~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      |+++++|++|+.+....+...+.|+++.|++|+++|+.+..+|+++.+++.+.+.....+...+..+++..+|+++++++
T Consensus       164 g~~lvvD~a~~~~~~~~p~~~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~~~g~~~~~~~a~l~~~~l~  243 (377)
T PRK07671        164 GLLTIVDNTFMTPYWQSPISLGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGILGPQDSWLLLRGLK  243 (377)
T ss_pred             CCEEEEECCCCccccCChhhhCCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHHHhhcCCCCHHHHHHHHcCcC
Confidence            99999999998877777778889999999999998888777898888877777878888888889999999999999999


Q ss_pred             chHhhHHHHhhchhcc
Q 024619          249 TMALRVEKQQVCFFDL  264 (265)
Q Consensus       249 ~~~~~~~~~~~~~~~l  264 (265)
                      ++..|++++++|+..+
T Consensus       244 tl~~R~~~~~~na~~l  259 (377)
T PRK07671        244 TLGIRMEEHETNSRAI  259 (377)
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            9999999999998764

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=100.00  E-value=7.9e-36  Score=261.04  Aligned_cols=254  Identities=43%  Similarity=0.711  Sum_probs=224.7

Q ss_pred             eeEeeccCC-CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHHHHHHh
Q 024619           11 TLLMNFSNE-FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHL   89 (265)
Q Consensus        11 ~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~~~~~~   89 (265)
                      +..++-+.. .+..|...||++++.++..+.......|.|++.++|..+++++.++++.|.+..++++||+.|+.+++.+
T Consensus         5 t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~y~r~~~p~~~~Le~~la~l~g~~~al~~~SG~~Al~~~l~~   84 (380)
T PRK06176          5 TKLIHGGISEDTTTGAVSVPIYQTSTYRQDAIGRPKGYEYSRSGNPTRFALEELIADLEGGVKGFAFASGLAGIHAVFSL   84 (380)
T ss_pred             ceeeECCCCCCCCCCCccCCcccCCceecCCCCCcCCCcccCCCChhHHHHHHHHHHHhCCCCEEEECCHHHHHHHHHHH
Confidence            445665522 2336889999999999876664444568899999999999999999999999999999999998866778


Q ss_pred             cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcC
Q 024619           90 LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHG  169 (265)
Q Consensus        90 ~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~  169 (265)
                      +++||+|+++++.|++....+...++..|+++.+++..|++++++++++++++|++++|+||+|.+.|+++|+++|+++|
T Consensus        85 l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~~vd~~d~e~l~~ai~~~t~lV~lesP~Nptg~~~di~~I~~la~~~g  164 (380)
T PRK06176         85 FQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTIIDTSDLSQIKKAIKPNTKALYLETPSNPLLKITDLAQCASVAKDHG  164 (380)
T ss_pred             cCCCCEEEEcCCChhHHHHHHHHHHHhcCeEEEEcCCCCHHHHHHhcCcCceEEEEECCCCCCceecCHHHHHHHHHHcC
Confidence            89999999999999988877777788899999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccCc
Q 024619          170 ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT  249 (265)
Q Consensus       170 ~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  249 (265)
                      +++|+|++|+.+....+...+.|++++|++|+++|+++..+|+++.+++.+.+.....+...+..+++..+|.+.++++.
T Consensus       165 i~vivD~t~a~~~~~~p~~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~~~l~~~gl~t  244 (380)
T PRK06176        165 LLTIVDNTFATPYYQNPLLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQRGIKT  244 (380)
T ss_pred             CEEEEECCccccccCCccccCCCEEEecCceeccCCccceeeEEEecHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccCc
Confidence            99999999998877777888999999999999988887889999887777777777888888888999999999999999


Q ss_pred             hHhhHHHHhhchhcc
Q 024619          250 MALRVEKQQVCFFDL  264 (265)
Q Consensus       250 ~~~~~~~~~~~~~~l  264 (265)
                      +..|++++++|+..+
T Consensus       245 l~~R~~~~~~~a~~l  259 (380)
T PRK06176        245 LGLRMEAHQKNALCV  259 (380)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999987654

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=100.00  E-value=7.5e-36  Score=260.59  Aligned_cols=243  Identities=26%  Similarity=0.442  Sum_probs=212.7

Q ss_pred             CCCCCCCCCeeeccccccCCC----CCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHhcCCCCE
Q 024619           21 DPYGALSTPLYQTATFKQPSA----TENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEE   95 (265)
Q Consensus        21 ~~~g~~~~~~~~~~~~~~~~~----~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~~~~g~~   95 (265)
                      +..|+..||++++.++..+..    .....+.|+|.|+|..+.+++.++++.|.+++++++||++|+. ++.+++++||+
T Consensus        12 ~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~Y~r~gnPt~~~lE~~lA~l~g~~~~~~~~sG~~Ai~~al~all~~GD~   91 (377)
T TIGR01324        12 FSQGSVNPPLQRASTVLFDSHAAQRRAKGELTYGRRGTLTHFALQDAMCELEGGAGCYLYPSGLAAVTNSILAFVKAGDH   91 (377)
T ss_pred             CCCCCccCCeeCCCceeeCChhhhcCCcCCCcccCCCCccHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhcCCCCE
Confidence            346889999999999865542    1334688999999999999999999999999999999999986 77888999999


Q ss_pred             EEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEe
Q 024619           96 IVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVD  175 (265)
Q Consensus        96 viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D  175 (265)
                      |+++++.|++....+...++..|+++..++..+.+++++++.+++++|++++|+||+|.+.|+++|+++|+++|+++++|
T Consensus        92 Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~d~~~~e~l~~~i~~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD  171 (377)
T TIGR01324        92 VLMVDSAYEPTRYFCDIVLKRMGVDITYYDPLIGEDIATLIQPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMID  171 (377)
T ss_pred             EEEcCCCcHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEE
Confidence            99999999888765545567789999998876668899999999999999999999999999999999999999999999


Q ss_pred             CCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccCchHhhHH
Q 024619          176 NSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVE  255 (265)
Q Consensus       176 ~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  255 (265)
                      ++|+.|....+.+.+.|+++.|++|+++|++++.+|+++.+++.+ +.+.......+..++|..+|..+++++++..|++
T Consensus       172 ~t~a~g~~~~pl~~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~-~~l~~~~~~~G~~l~p~~a~~~~rgl~tl~~R~~  250 (377)
T TIGR01324       172 NTWAAGLLFKPLEHGVDISIQAGTKYLVGHSDIMIGTVVANARTW-DQLREHSYLMGQMVDADDAYTTLRGLRTLGVRLK  250 (377)
T ss_pred             CCCccccccCccccCceEEEecCceeccCCCCceEEEEEeCHHHH-HHHHHHHHHhCCCCCHHHHHHHHhhhhhHHHHHH
Confidence            999999988888999999999999999999999999998776544 4444456677889999999999999999999999


Q ss_pred             HHhhchhcc
Q 024619          256 KQQVCFFDL  264 (265)
Q Consensus       256 ~~~~~~~~l  264 (265)
                      ++++|+.++
T Consensus       251 ~~~~~a~~l  259 (377)
T TIGR01324       251 QHQESSLAI  259 (377)
T ss_pred             HHHHHHHHH
Confidence            999997654

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=100.00  E-value=1.2e-35  Score=260.16  Aligned_cols=257  Identities=39%  Similarity=0.610  Sum_probs=221.5

Q ss_pred             CcceeEeeccCC-CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-H
Q 024619            8 GVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-A   85 (265)
Q Consensus         8 ~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~   85 (265)
                      ..++..++.+.. .+..|...||+..+.++..........+.|+|.++|..+++++.++++.|.++++++++|++|+. +
T Consensus         3 ~~~t~~~~~~~~~~~~~~~~~~pi~~ss~~~~~~~~~~~~~~Y~R~~~p~~~~le~~lA~l~g~~~v~~~~gg~~Ai~~~   82 (382)
T TIGR02080         3 KQATIAVRSGLNSDTQYGCVVPPIYLSTTYNFTGFNEPRAYDYSRSGNPTRDLLQQALAELEGGAGAVVTNTGMSAIHLV   82 (382)
T ss_pred             CcccceeecCCCCCCCCCCccCCeeCCceeEeCCcCccCCCcccCCCCchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHH
Confidence            345666776622 33468999999999987654332234578999999999999999999999888888888899996 6


Q ss_pred             HHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHH
Q 024619           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA  165 (265)
Q Consensus        86 ~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a  165 (265)
                      +..++++||+|+++.|.|++....+.......++++..++..|++++++++.+++++|++++|+||||.+.|+++|+++|
T Consensus        83 l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~~tklV~l~~p~NPtG~~~dl~~I~~la  162 (382)
T TIGR02080        83 TTALLGPDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQKPKLVLIETPSNPLLRVVDIAKICHLA  162 (382)
T ss_pred             HHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCEecCHHHHHHHH
Confidence            77789999999999999998776666666777889999888899999999998999999999999999999999999999


Q ss_pred             HHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHh
Q 024619          166 HAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR  245 (265)
Q Consensus       166 ~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (265)
                      +++|+++++|++|+.+....+...+.|+++.|++|+++|++++++|+++.++..+.+.....+...+..+++.++|++++
T Consensus       163 ~~~g~~vvvD~a~~~~~~~~pl~~gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~~~g~~~sp~~a~l~lr  242 (382)
T TIGR02080       163 KAVGAVVVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWANNLGVTGGAFDSYLTLR  242 (382)
T ss_pred             HHcCCEEEEECCCcccccCCchhhCCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHHHHccCCCCCHHHHHHHHc
Confidence            99999999999999887666777789999999999999999999999988777777777777777788999999999999


Q ss_pred             ccCchHhhHHHHhhchhcc
Q 024619          246 GVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       246 ~l~~~~~~~~~~~~~~~~l  264 (265)
                      +++++..|++++.+|+..+
T Consensus       243 ~l~tl~~R~~~~~~na~~~  261 (382)
T TIGR02080       243 GLRTLVARMRLQQRNAQAI  261 (382)
T ss_pred             ccchHHHHHHHHHHHHHHH
Confidence            9999999999999998764

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=1.2e-35  Score=260.26  Aligned_cols=257  Identities=36%  Similarity=0.561  Sum_probs=222.5

Q ss_pred             CcceeEeeccC-CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-H
Q 024619            8 GVSTLLMNFSN-EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-A   85 (265)
Q Consensus         8 ~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~   85 (265)
                      +.++..++-+. ..+..|...||++++.++..........+.|+|.++|.++.+++.++++.|.++++++++|++++. +
T Consensus         4 ~~~t~~~~~~~~~~~~~~~~~~pi~~~s~~~~~~~~~~~~~~Y~R~~~pt~~~L~~~lA~l~g~~~~i~~~sg~~Ai~~~   83 (386)
T PRK08045          4 KQATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNEPRAHDYSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLV   83 (386)
T ss_pred             CcccceeEcCCCCCCCCCCccCCccCCcceecCCccccCCceeeCCCCccHHHHHHHHHHHhCCCeEEEECCHHHHHHHH
Confidence            34456677652 234468899999999998765543445688999999999999999999999888888889999986 6


Q ss_pred             HHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHH
Q 024619           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA  165 (265)
Q Consensus        86 ~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a  165 (265)
                      +..++++||+|++++|.|++....+.......++++..++..|++++++++.+++++|++++|+||||.+.|+++|.++|
T Consensus        84 l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~l~~~tklV~l~sP~NPtG~v~di~~I~~ia  163 (386)
T PRK08045         84 TTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLA  163 (386)
T ss_pred             HHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhCCeEEEEeCCCCHHHHHHhcccCCeEEEEECCCCCCCEecCHHHHHHHH
Confidence            67789999999999999997766666666667788888888899999999988999999999999999999999999999


Q ss_pred             HHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHh
Q 024619          166 HAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR  245 (265)
Q Consensus       166 ~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (265)
                      +++|+++++|++|+.+....+...+.|+++.|++||++|++++++|+++.+++.+.+.+...+...+..+++..+|++++
T Consensus       164 ~~~g~~vivDeay~~~~~~~pl~~gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~~~g~~~~p~~~~l~~r  243 (386)
T PRK08045        164 REAGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLR  243 (386)
T ss_pred             HHcCCEEEEECCCCccccCCchhhCCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHh
Confidence            99999999999999887777888899999999999999999999999988766666766677777788899999999999


Q ss_pred             ccCchHhhHHHHhhchhcc
Q 024619          246 GVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       246 ~l~~~~~~~~~~~~~~~~l  264 (265)
                      +|+++..|++++.+|+..+
T Consensus       244 gl~tl~~R~~~~~~na~~l  262 (386)
T PRK08045        244 GLRTLVPRMELAQRNAQAI  262 (386)
T ss_pred             hhccHHHHHHHHHHHHHHH
Confidence            9999999999999998764

>PRK08064 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=1.4e-35  Score=260.70  Aligned_cols=260  Identities=44%  Similarity=0.765  Sum_probs=226.8

Q ss_pred             CCCCcceeEeeccCC-CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHH
Q 024619            5 EEPGVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL   83 (265)
Q Consensus         5 ~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al   83 (265)
                      ++.+.++..++.+.. ....|+.++|++++.++..+.......+.|+|.++|..+++++.+++++|.+..+++++|+.|+
T Consensus         3 ~~~~~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~~v~~~sG~~ai   82 (390)
T PRK08064          3 MSYSIDTLLLHNQYKHDKQTGAVNVPIYHASTFHQFDFDTFGKYDYSRSGNPTREALEDIIAELEGGTKGFAFASGMAAI   82 (390)
T ss_pred             CCCCcccceeeCCCCCCCCCCCccCCcccCcceecCcccccCCCcccCCCChhHHHHHHHHHHHhCCCCeEEECCHHHHH
Confidence            444566777777632 2346899999999999876665555678899999999999999999999999999999999888


Q ss_pred             HHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHH
Q 024619           84 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAE  163 (265)
Q Consensus        84 ~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~  163 (265)
                      .++..++++||+|+++++.|++....+...++..|++++.++..|++++++++++++++|++++|+||+|.+.|+++|.+
T Consensus        83 ~~~l~~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~l~~~tklV~l~~p~NptG~~~dl~~I~~  162 (390)
T PRK08064         83 STAFLLLSKGDHVLISEDVYGGTYRMITEVLSRFGIEHTFVDMTNLEEVAQNIKPNTKLFYVETPSNPLLKVTDIRGVVK  162 (390)
T ss_pred             HHHHHHhCCCCEEEEccCccchHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCcEeccHHHHHH
Confidence            74445889999999999999987777767778899999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHH
Q 024619          164 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC  243 (265)
Q Consensus       164 ~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (265)
                      +|+++|+++++|++|+.+....+.+.+.|+++.|++|+++|++|+++|+++.+++.+.+.+...+...+..+++..++..
T Consensus       163 la~~~g~~vvvD~a~~~~~~~~~~~~g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~~~~~~~a~l~  242 (390)
T PRK08064        163 LAKAIGCLTFVDNTFLTPLLQKPLDLGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVLGVQDCWLV  242 (390)
T ss_pred             HHHHcCCEEEEECCCCcccccCchhhCCcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            99999999999999998876667778899999999999999998889999888777777777777778888999999999


Q ss_pred             HhccCchHhhHHHHhhchhcc
Q 024619          244 LRGVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       244 ~~~l~~~~~~~~~~~~~~~~l  264 (265)
                      ++.++++..|++++..|+..+
T Consensus       243 ~~gl~tl~~R~~~~~~~a~~l  263 (390)
T PRK08064        243 LRGLKTLHVRLEHSSETANKI  263 (390)
T ss_pred             HcccCcHHHHHHHHHHHHHHH
Confidence            999999999999999887654

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=100.00  E-value=1.6e-35  Score=258.60  Aligned_cols=256  Identities=43%  Similarity=0.728  Sum_probs=222.0

Q ss_pred             cceeEeeccCC-CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHHHHH
Q 024619            9 VSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVT   87 (265)
Q Consensus         9 ~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~~~~   87 (265)
                      .++..++.+.. .+..|...||++++.++..+.......+.|+|.++|..+++++.+++++|.+..+++++|++|+.++.
T Consensus         5 ~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~y~r~~~pt~~~le~~la~l~g~~~~~~~~sG~~ai~~~~   84 (366)
T PRK08247          5 IETKLAQIGNRSDERTGTVNPPVYFSTAYRHEGIGESTGFDYSRTGNPTRGVLEQAIADLEGGDQGFACSSGMAAIQLVM   84 (366)
T ss_pred             cchhheeCCCCCCCCCCCccCCcccCcccccCCCCCcCCccccCCCCchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHH
Confidence            34556776622 23468899999999998765533345688999999999999999999999998999999999997666


Q ss_pred             HhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHH
Q 024619           88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA  167 (265)
Q Consensus        88 ~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~  167 (265)
                      .++++||+|++++|.|++....+...++..|++++.++..|++++++++.+++++|++++|+||+|.+.++++|+++|++
T Consensus        85 ~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~~  164 (366)
T PRK08247         85 SLFRSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNTASLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKK  164 (366)
T ss_pred             HHhCCCCEEEEecCCcCcHHHHHHHHhhccCceEEEECCCCHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHHH
Confidence            78899999999999999987766677788999999999999999999999899999999999999999999999999999


Q ss_pred             cCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhcc
Q 024619          168 HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV  247 (265)
Q Consensus       168 ~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  247 (265)
                      +|+++|+|++|+.+....+...+.|+++.|++|+++|++++++|+++.+++.+.+.....+...+..+++..++++.+++
T Consensus       165 ~g~~lIvD~t~~~~~~~~p~~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~l  244 (366)
T PRK08247        165 HGLLLIVDNTFYTPVLQRPLEEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIRGM  244 (366)
T ss_pred             cCCEEEEECCCccccccCchhcCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHHHHhcCCCCChHHHHHHHhcc
Confidence            99999999999888777777778999999999999988888999998876667676777777777888999999999999


Q ss_pred             CchHhhHHHHhhchhcc
Q 024619          248 KTMALRVEKQQVCFFDL  264 (265)
Q Consensus       248 ~~~~~~~~~~~~~~~~l  264 (265)
                      +++..+++++++|+..+
T Consensus       245 ~tl~~r~~~~~~~a~~l  261 (366)
T PRK08247        245 KTLALRMRQHEENAKAI  261 (366)
T ss_pred             CcHHHHHHHHHHHHHHH
Confidence            99988888888887653

>PRK07050 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=2.8e-35  Score=258.75  Aligned_cols=258  Identities=24%  Similarity=0.405  Sum_probs=225.6

Q ss_pred             CCcceeEeeccC-CCCCCCCCCCCeeeccccccCCCC--------CCCCCccCCCCChhHHHHHHHHHhHhCCCceEEec
Q 024619            7 PGVSTLLMNFSN-EFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFT   77 (265)
Q Consensus         7 ~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~   77 (265)
                      .+.++..++.+. ..+..|...+|++++.++..+...        ....+.|++.++|..+++++.+++++|.+.+++++
T Consensus         8 ~~~~t~~~~~~~~~~~~~~~~~~pi~~~s~~~~~~~~~~~~~~~~~~~~~~Y~r~~~pt~~~Le~~lA~l~g~~~~l~~~   87 (394)
T PRK07050          8 RALQTRIVQPDDQIPPGFRSFVTPVARASTVVFPDLATMRALDWRQDVQWRYGLHATPTSLALAQRLAEIEGGRHALLQP   87 (394)
T ss_pred             CCccchheECCCCCCCCCCCccCCeeCCcceecCCHHHHHhhcccccCCcccCCCCCHHHHHHHHHHHHHhCCCeEEEec
Confidence            345567787773 234478999999999998655421        23457899999999999999999999999999999


Q ss_pred             chHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccc
Q 024619           78 SGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQIC  156 (265)
Q Consensus        78 ~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~  156 (265)
                      ||++|+. ++.+++++||+|++++|.|+.+...+...++..|+++++++..+.+++++++.+++++|++++|+||+|.+.
T Consensus        88 sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~~~~~l~~~i~~~tklV~le~p~Np~~~~~  167 (394)
T PRK07050         88 SGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFGITVRFYDPLIGAGIADLIQPNTRLIWLEAPGSVTMEVP  167 (394)
T ss_pred             cHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHHhcCeEEEEECCCCHHHHHHhcCCCCeEEEEECCCCCCccHh
Confidence            9999986 677889999999999999999887665667888999999998788899999999999999999999999999


Q ss_pred             cHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCC
Q 024619          157 DIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA  236 (265)
Q Consensus       157 ~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~  236 (265)
                      |+++|+++|+++|+++++|++|+.+....+...+.|+++.|++|+++|+.++++|+++..++.+.+.........+..++
T Consensus       168 di~~I~~ia~~~gi~livD~a~a~~~~~~~l~~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~~G~~~~  247 (394)
T PRK07050        168 DVPAITAAARARGVVTAIDNTYSAGLAFKPFEHGVDISVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIGVS  247 (394)
T ss_pred             hHHHHHHHHHHcCCEEEEECCcccccccCHHHcCCeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHHhcCCCCC
Confidence            99999999999999999999999998878888899999999999999888888999888877777777777777788999


Q ss_pred             hhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619          237 PFDCWICLRGVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l  264 (265)
                      +.+++++++.++++..|++++.+|++.+
T Consensus       248 ~~~a~l~lr~l~tl~~Rl~~~~~~a~~l  275 (394)
T PRK07050        248 ADDCSLVLRGLPSLQVRLAAHDRSALEV  275 (394)
T ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence            9999999999999999999998887754

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=100.00  E-value=3.7e-36  Score=261.54  Aligned_cols=243  Identities=48%  Similarity=0.771  Sum_probs=209.2

Q ss_pred             CCCCCCCCeeeccccccCC-------CCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHhcCCC
Q 024619           22 PYGALSTPLYQTATFKQPS-------ATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTG   93 (265)
Q Consensus        22 ~~g~~~~~~~~~~~~~~~~-------~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~~~~g   93 (265)
                      ..+...||++++.++..+.       ......+.|+|.|+|.++.+++.++++.|++.+++++||++|+. ++++++++|
T Consensus        15 ~~~~v~~pi~~sstf~~~~~~~~~~~~~~~~~~~Y~R~gnPt~~~le~~la~Le~g~~a~~~~SGmaAi~~~l~~ll~~G   94 (386)
T PF01053_consen   15 QTGAVNPPIYQSSTFVFDSAEELDAFAGEEKGYIYSRYGNPTVRALEQRLAALEGGEDALLFSSGMAAISAALLALLKPG   94 (386)
T ss_dssp             TTTBSS--B---SBBBBSSHHHHHHHTTSSSSCSBTTTC-HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHS-TT
T ss_pred             CCCCeeCCccccccCcccchHHHHhhcCCCCCcceeccccccHHHHHHHHHHhhcccceeeccchHHHHHHHHHhhcccC
Confidence            6899999999999988772       23445699999999999999999999999999999999999995 888999999


Q ss_pred             CEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcC-CEE
Q 024619           94 EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHG-ALL  172 (265)
Q Consensus        94 ~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~-~~l  172 (265)
                      |+|++....|.+....+...+...|+++.+++..|++++++++++++++|++++|.||+..+.|+++|+++|+++| +++
T Consensus        95 d~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~  174 (386)
T PF01053_consen   95 DHIVASDDLYGGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILV  174 (386)
T ss_dssp             BEEEEESSSSHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EE
T ss_pred             CceEecCCccCcchhhhhhhhcccCcEEEEeCchhHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceE
Confidence            9999999999999998888888899999999999999999999999999999999999999999999999999998 999


Q ss_pred             EEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeec-hhHHHHHHHHHHhccCCCChhHHHHHHhccCchH
Q 024619          173 LVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG-ERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA  251 (265)
Q Consensus       173 i~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  251 (265)
                      ++|.+++.+....|+..|+|+++.|++|+++|+..+++|+++.++ ..+.+.+...+...+..+++.++|+++++++++.
T Consensus       175 vVDnT~atp~~~~pL~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~G~~~~p~da~ll~rgl~Tl~  254 (386)
T PF01053_consen  175 VVDNTFATPYNQNPLELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRRLLGATLSPFDAWLLLRGLRTLP  254 (386)
T ss_dssp             EEECTTTHTTTC-GGGGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTTHH
T ss_pred             EeeccccceeeeccCcCCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhhhcCccchHHHHHHHhcCCCcHH
Confidence            999999999888999999999999999999999999999999887 5677777788889999999999999999999999


Q ss_pred             hhHHHHhhchhcc
Q 024619          252 LRVEKQQVCFFDL  264 (265)
Q Consensus       252 ~~~~~~~~~~~~l  264 (265)
                      .|++++.+|+.++
T Consensus       255 ~R~~~~~~nA~~l  267 (386)
T PF01053_consen  255 LRMERQNENAEAL  267 (386)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999875

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>PRK06767 methionine gamma-lyase; Provisional

Probab=100.00  E-value=3.4e-35  Score=258.12  Aligned_cols=261  Identities=36%  Similarity=0.606  Sum_probs=223.0

Q ss_pred             CCCCCcceeEeeccCC-CCCCCCCCCCeeeccccccCCCC--------CCCCCccCCCCChhHHHHHHHHHhHhCCCceE
Q 024619            4 EEEPGVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRAL   74 (265)
Q Consensus         4 ~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i   74 (265)
                      |+..+.++..++.+.. .+..|...||++++.++..+...        ....+.|+|.++|..+++++.+++++|.++.+
T Consensus         1 ~~~~~~~t~~~~~~~~~~~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~y~r~~~pt~~~Le~~lA~l~G~~~al   80 (386)
T PRK06767          1 MKKKHMETALIHHGYTSEEHKGSLTPPLFQTSTFTFETAQQGEASFAGVDPSYIYSRLGNPTVKLFEERMAVLEGGEEAL   80 (386)
T ss_pred             CCCCCcccceeeCCCCCCCCCCCccCCccCccceecCCHHHHHHhhccCcCCccccCCCCcchHHHHHHHHHHhCCCcEE
Confidence            4556667888888732 34468899999999998665421        22457899999999999999999999999999


Q ss_pred             EecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCcc
Q 024619           75 CFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQ  153 (265)
Q Consensus        75 ~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G  153 (265)
                      ++++|++|+. ++..++++||+|+++.+.|+.....+....+..|+++..++..|++++++++.+++++|++++|+||+|
T Consensus        81 ~~~sG~~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi~~~~~~~~d~~~l~~~i~~~tklV~lesp~NptG  160 (386)
T PRK06767         81 AFGSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFMITHSFCDMETEADIENKIRPNTKLIFVETPINPTM  160 (386)
T ss_pred             EECCHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHHHhhcCeEEEEeCCCCHHHHHHhhCcCceEEEEeCCCCCCc
Confidence            9999998885 667889999999999999988877766666778899988998899999999998999999999999999


Q ss_pred             ccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccC
Q 024619          154 QICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS  233 (265)
Q Consensus       154 ~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~  233 (265)
                      .+.|+++|.++|+++|+++++|++|+.+....+...+.|+++.|++|+++|+++.++|+++++++.+.+.........+.
T Consensus       161 ~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~pl~~g~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~~~g~  240 (386)
T PRK06767        161 KLIDLKQVIRVAKRNGLLVIVDNTFCSPYLQRPLELGCDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDIGG  240 (386)
T ss_pred             eecCHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCcEEEecCcceecCCCCceeEEEEeChHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999887777777889999999999998776656799998887776655566666677


Q ss_pred             CCChhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619          234 GLAPFDCWICLRGVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       234 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l  264 (265)
                      .+++..+++.+++|+++..+++++++++..+
T Consensus       241 ~~~~~~a~l~~~~L~tl~~r~~~~~~~a~~l  271 (386)
T PRK06767        241 IMAPFDAWLLLRGLKTLAVRMDRHCDNAEKI  271 (386)
T ss_pred             CCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence            8899999999999999999999998887754

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=4.6e-35  Score=259.47  Aligned_cols=263  Identities=37%  Similarity=0.562  Sum_probs=220.7

Q ss_pred             CCCCCCCcceeEeeccCC-CCCCCCCCCCeeeccccccCCCC--------CCCCCccCCCCChhHHHHHHHHHhHhCCCc
Q 024619            2 SVEEEPGVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADR   72 (265)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~   72 (265)
                      +-.+..+.++..++.+.. .+..|+..+|++++.++..+...        ....+.|+|.++|..+.+++.++++.|.++
T Consensus         2 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~Le~~lA~leg~~~   81 (431)
T PRK08248          2 SEERTFRLETLAIHAGQEIDPTTGSRAVPIYQTTSYGFRDSEHAANLFSLKEFGNIYTRIMNPTTDVFEKRIAALEGGIG   81 (431)
T ss_pred             cccccCCcchhheeCCcCCCCCCCCccCCeeCCCccccCCHHHHHhhhccccCCceeECCCCchHHHHHHHHHHHhCCCc
Confidence            344555566778887732 23368889999999998654421        234577999999999999999999999999


Q ss_pred             eEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCC
Q 024619           73 ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNP  151 (265)
Q Consensus        73 ~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np  151 (265)
                      .+++++|++|+. ++..++++||+|+++++.|++....+...++..|++++.++..|++++++++++++++|++++|+||
T Consensus        82 al~~~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~~d~e~l~~ai~~~tklV~l~sp~NP  161 (431)
T PRK08248         82 ALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDPSDPENFEAAITDKTKALFAETIGNP  161 (431)
T ss_pred             EEEECCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHhCCEEEEEECCCCHHHHHHhcCCCCeEEEEECCCCC
Confidence            999999999986 7778899999999999999888777777788899999999999999999999999999999999999


Q ss_pred             ccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhH-----------
Q 024619          152 RQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL-----------  220 (265)
Q Consensus       152 ~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~-----------  220 (265)
                      ||.+.|+++|+++|+++|+++|+|++++.+....+.+.+.|+++.|++|+++|++...+|+++.+.+..           
T Consensus       162 tG~v~di~~I~~la~~~gi~vIvD~t~a~~~~~~pl~~gaDivv~S~tK~lgg~g~~~Gg~v~~~~~~~~~~~~~~~~~~  241 (431)
T PRK08248        162 KGDVLDIEAVAAIAHEHGIPLIVDNTFASPYLLRPIEHGADIVVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGLT  241 (431)
T ss_pred             CCcccCHHHHHHHHHHcCCEEEEeCCCCccccCChhHcCCCEEEEcCccccCCCCCceEEEEEeCCcccccccccccccc
Confidence            999999999999999999999999999877766777889999999999999777666677776544211           


Q ss_pred             ---------------------HHHHHHHHHhccCCCChhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619          221 ---------------------AKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       221 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l  264 (265)
                                           ...........+..++|.++|+++++|+++..|++++++|+.++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~rgl~tl~~R~~~~~~nA~~l  306 (431)
T PRK08248        242 EPDPSYHGLVYTDAVGEAAYITKARVQLLRDLGAALSPFNSFLLLQGLETLHLRMERHSENALAV  306 (431)
T ss_pred             CCccccccchhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHhcCcCcHHHHHHHHHHHHHHH
Confidence                                 11222345567899999999999999999999999999999875

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=6.7e-35  Score=256.88  Aligned_cols=257  Identities=36%  Similarity=0.598  Sum_probs=220.6

Q ss_pred             CcceeEeeccCC-CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-H
Q 024619            8 GVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-A   85 (265)
Q Consensus         8 ~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~   85 (265)
                      ..++..++.+.. .+..|...||+..+.++..........+.|++.++|..+++++.++++.|.++.+++++|++++. +
T Consensus        12 ~~~t~~~~~~~~~~~~~~~~~~pi~~ss~~~~~~~~~~~~~~y~R~~~p~~~~Le~~lA~l~g~~~~v~~~sG~~Ai~~~   91 (405)
T PRK08776         12 SAATAAVRAGIDRDTAYGAVTPPIVLSSNFSFDGFGNKRQYDYTRSGNPTRDLLGEALAELEGGAGGVITATGMGAINLV   91 (405)
T ss_pred             CccchheeCCCCCCCCCCCccCCEeccceEEeCCCCcccCCcccCCCChHHHHHHHHHHHHhCCCceEEEcCHHHHHHHH
Confidence            344567776622 33468889999999987655433334678999999999999999999999999999999999986 6


Q ss_pred             HHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHH
Q 024619           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA  165 (265)
Q Consensus        86 ~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a  165 (265)
                      +..++++||+|+++.|.|+.....+...++..|++++.++..|++++++++.+++++|++++|+||+|.+.|+++|+++|
T Consensus        92 l~all~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la  171 (405)
T PRK08776         92 LNALLQPGDTLVVPHDAYGGSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAA  171 (405)
T ss_pred             HHHHhCCCCEEEEccCCchHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHH
Confidence            67789999999999999998766666666778999999999999999999988999999999999999999999999999


Q ss_pred             HHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHh
Q 024619          166 HAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR  245 (265)
Q Consensus       166 ~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (265)
                      +++|+++|+|++|+.+....+...+.|+++.|++|+++|++++++|+++.+++.+.+.+.......+..+++..+++.++
T Consensus       172 ~~~gi~vIvD~a~a~~~~~~pl~~gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~~~~g~~~s~~~a~l~~~  251 (405)
T PRK08776        172 HKVGALTVVDNTFLSPALQKPLEFGADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWANALGLTGSPFDAFLTLR  251 (405)
T ss_pred             HHcCCEEEEECCCcccccCCcccccCCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHh
Confidence            99999999999999877666777889999999999999888888999988777777766666666677789999999999


Q ss_pred             ccCchHhhHHHHhhchhcc
Q 024619          246 GVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       246 ~l~~~~~~~~~~~~~~~~l  264 (265)
                      +++.+..+++.+.+|+..+
T Consensus       252 gl~tl~~r~~~~~~na~~l  270 (405)
T PRK08776        252 GLRTLDARLRVHQENADAI  270 (405)
T ss_pred             hhCcHHHHHHHHHHHHHHH
Confidence            9999999999999998764

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=1.2e-34  Score=254.64  Aligned_cols=257  Identities=44%  Similarity=0.717  Sum_probs=221.9

Q ss_pred             CcceeEeeccCC-CCCCCCCCCCeeeccccccCCCCC-CCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-
Q 024619            8 GVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSATE-NGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-   84 (265)
Q Consensus         8 ~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-   84 (265)
                      +.++..++.+.. .+..|...+|++++.++....... ...+.|++.++|..+++++.+++++|.+..+++++|++|+. 
T Consensus        12 ~~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~Y~r~~~p~~~~Le~~lA~~~g~~~~i~~~sG~~Ai~~   91 (388)
T PRK07811         12 GFATRAIHAGYEPDPATGAVNPPIYASSTFAQDGVGGLRGGYEYARTGNPTRTALEEQLAALEGGAYGRAFSSGMAATDC   91 (388)
T ss_pred             CcccceeeCCCCCCCCCCCccCCccCCcceecCCcccccCCCcccCCCCccHHHHHHHHHHHhCCCceEEeCCHHHHHHH
Confidence            345667776622 334688999999999987655432 24578999999999999999999999999999999999986 


Q ss_pred             HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHH
Q 024619           85 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEM  164 (265)
Q Consensus        85 ~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~  164 (265)
                      ++..++++||+|+++.|.|++....+...++..|++++.++..|++++++++.+++++|++++|+||+|.+.|+++|+++
T Consensus        92 ~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~~d~~d~e~l~~~i~~~tklV~ie~p~NPtg~~~dl~~I~~l  171 (388)
T PRK07811         92 LLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTPVDLSDLDAVRAAITPRTKLIWVETPTNPLLSITDIAALAEL  171 (388)
T ss_pred             HHHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCCeEEEEeCCCCHHHHHHhcCcCCeEEEEECCCCCcceecCHHHHHHH
Confidence            67788999999999999999877666666777899999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHH
Q 024619          165 AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL  244 (265)
Q Consensus       165 a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (265)
                      |+++|+++|+|++|+.+....+...+.|++++|++|+++|+++.++|+++.+++.+.+.....+...+..+++..+++.+
T Consensus       172 a~~~gi~lIvD~a~a~~~~~~p~~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~  251 (388)
T PRK07811        172 AHDAGAKVVVDNTFASPYLQQPLALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVPGPFDAYLTL  251 (388)
T ss_pred             HHHcCCEEEEECCCCccccCCchhhCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            99999999999999988777777788999999999999888888899998887777776766666677888899999999


Q ss_pred             hccCchHhhHHHHhhchhcc
Q 024619          245 RGVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       245 ~~l~~~~~~~~~~~~~~~~l  264 (265)
                      ++|+++..|++++.+|+..+
T Consensus       252 ~~L~tl~~R~~~~~~na~~l  271 (388)
T PRK07811        252 RGLKTLAVRMDRHSENAEAV  271 (388)
T ss_pred             hccCcHHHHHHHHHHHHHHH
Confidence            99999999999998887654

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=100.00  E-value=7.3e-35  Score=256.65  Aligned_cols=257  Identities=32%  Similarity=0.504  Sum_probs=220.2

Q ss_pred             CcceeEeeccCCCCCCCCCCCCeeeccccccCCCC--------CCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecch
Q 024619            8 GVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSG   79 (265)
Q Consensus         8 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g   79 (265)
                      +.++..++.+...+..+...+|++++.++......        ....+.|++.++|..+++++.++++.|.++++++++|
T Consensus        15 ~~~t~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~Y~r~~~p~~~~le~~lA~l~g~~~al~~~sG   94 (403)
T PRK07810         15 SQATIGVRGGLLRSGFEETAEALYLTSGYVYESAAAAEAAFTGELDRFVYSRYGNPTVSMFEERLRLIEGAEACFATASG   94 (403)
T ss_pred             CcchhheeCCCCCCCCCCccCCccCCCccccCCHHHHHHHhccCcCCcceeCCCCchHHHHHHHHHHHhCCCcEEEECCh
Confidence            34566777763334567888999999987554421        2235779999999999999999999999999999999


Q ss_pred             HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccH
Q 024619           80 MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI  158 (265)
Q Consensus        80 ~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l  158 (265)
                      +.|+. ++..++++||+|+++...|++....+...++..|+++++++..|++++++++.+++++|++++|+||+|.+.|+
T Consensus        95 ~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ai~~~tklV~~esp~Nptg~v~dl  174 (403)
T PRK07810         95 MSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWGVETVFVDGEDLSQWEEALSVPTQAVFFETPSNPMQSLVDI  174 (403)
T ss_pred             HHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCeecCH
Confidence            98885 67788999999999998888877666677788999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChh
Q 024619          159 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF  238 (265)
Q Consensus       159 ~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~  238 (265)
                      ++|+++|+++|+++++|++|+.+....+...+.|+++.|++|+++|+++..+|+++.+++.+...+.......+..+++.
T Consensus       175 ~~I~~la~~~g~~vivD~a~a~~~~~~~~~~gaDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~~~~g~~~s~~  254 (403)
T PRK07810        175 AAVSELAHAAGAKVVLDNVFATPLLQRGLPLGADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPALSAF  254 (403)
T ss_pred             HHHHHHHHHcCCEEEEECCCCccccCChhhcCCcEEEccCCceecCCcCceeEEEEeChHHHHHHHHHHHHHhCCCCCHH
Confidence            99999999999999999999988887777889999999999999877667789998887766555555556677889999


Q ss_pred             HHHHHHhccCchHhhHHHHhhchhcc
Q 024619          239 DCWICLRGVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       239 ~~~~~~~~l~~~~~~~~~~~~~~~~l  264 (265)
                      .++.++++|+++..|++++.+|+.++
T Consensus       255 ~a~l~l~~L~tl~~R~~~~~~~a~~~  280 (403)
T PRK07810        255 NAWVLLKGLETLALRVRHSNASALRI  280 (403)
T ss_pred             HHHHHHhccCcHHHHHHHHHHHHHHH
Confidence            99999999999999999999998764

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=100.00  E-value=1.3e-34  Score=251.91  Aligned_cols=256  Identities=39%  Similarity=0.633  Sum_probs=216.5

Q ss_pred             CCcceeEeeccCC-CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHHH
Q 024619            7 PGVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAA   85 (265)
Q Consensus         7 ~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~~   85 (265)
                      .+.++..++-+.. .+..+...||++++.++..+.......+.|+|.++|..+++++.++++.|.+.++++++|++|+.+
T Consensus         5 ~~~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~Y~R~~~p~~~~le~~lA~leg~~~~v~~~sG~aAi~~   84 (364)
T PRK07269          5 LHINTILAQAGIKSDEATGALVTPLHFSTTYQHPEFGQSTGFDYTRTKNPTRAKLEETLAAIESADYALATSSGMSAIVL   84 (364)
T ss_pred             CCcccceeeCCCCCCCCCCCccCCccCCcceecCCCCCcCCcceeCCCCccHHHHHHHHHHHhCCCeEEEeCCHHHHHHH
Confidence            3455667776622 333688899999999987665444456889999999999999999999999999999999999975


Q ss_pred             HHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHH
Q 024619           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA  165 (265)
Q Consensus        86 ~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a  165 (265)
                      +..++++||+|+++.+.|......+.......++++...  .|++++++++.+++++|++++|+||+|.+.|+++|+++|
T Consensus        85 ~l~~l~~GD~VI~~~~~yg~~~~~~~~~~~~~~~~~~~~--~d~~~l~~~i~~~TklV~lesP~NPtg~~~di~~I~~la  162 (364)
T PRK07269         85 AFSVFPVGSKVVAVRDLYGGSFRWFNQQEKEGRFHFTYA--NTEEELIAAIEEDTDIVYIETPTNPLMVEFDIEKVAKLA  162 (364)
T ss_pred             HHHHhCCCCEEEEecCCcCchHHHHHHHHhcCcEEEEec--CCHHHHHHhcCcCceEEEEECCCCCCCeeeCHHHHHHHH
Confidence            556789999999999999988765544444445554443  489999999999999999999999999999999999999


Q ss_pred             HHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHh
Q 024619          166 HAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR  245 (265)
Q Consensus       166 ~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (265)
                      +++|+++++|++|+.+....+...+.|+++.|++|+++|++++.+|+++.+++.+.+.....+...+..+++.++|++++
T Consensus       163 ~~~gi~vvvD~t~~~~~~~~pl~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~~~G~~~s~~~a~l~~~  242 (364)
T PRK07269        163 HAKGAKVIVDNTFYSPIYQRPIELGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFDSYLLMR  242 (364)
T ss_pred             HHcCCEEEEECCCcccccCCchhhCCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHc
Confidence            99999999999998887777888899999999999999888878999988777777766666666678899999999999


Q ss_pred             ccCchHhhHHHHhhchhcc
Q 024619          246 GVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       246 ~l~~~~~~~~~~~~~~~~l  264 (265)
                      +|+++..|++++++|+..+
T Consensus       243 ~L~tL~~r~~~~~~na~~~  261 (364)
T PRK07269        243 GLKTLSLRMERSTANAQEV  261 (364)
T ss_pred             CCCcHHHHHHHHHHHHHHH
Confidence            9999999999999998764

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=1.3e-34  Score=253.75  Aligned_cols=252  Identities=39%  Similarity=0.595  Sum_probs=214.7

Q ss_pred             eeEeeccCCCCCCCCCCCCeeeccccccCCC----CCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-H
Q 024619           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSA----TENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-A   85 (265)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~   85 (265)
                      +..++-+...+..+...||++++.++..+..    .....+.|+|.++|..+++++.+++++|.++++++++|++|+. +
T Consensus         5 t~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~y~r~~np~~~~lE~~lA~l~g~~~~l~~~sG~~Ai~~~   84 (385)
T PRK08574          5 TDAVRGYRGSDPYGSLQPPIYLTALFRQEGEAYPSDRGFDLKYSREENPTLRPLEEALAKLEGGVDALAFNSGMAAISTL   84 (385)
T ss_pred             ceeeecCCCCCCCCCccCCccCCcceecCcchhhcCCcCCceEECCCCccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHH
Confidence            4455644344567899999999999865442    1223577999999999999999999999999999999999985 7


Q ss_pred             HHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCC-CceEEEEecCCCCccccccHHHHHHH
Q 024619           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEM  164 (265)
Q Consensus        86 ~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~-~~~~i~~~~~~np~G~~~~l~~i~~~  164 (265)
                      +..++++||+|+++.+.|+++...+... +..|+++..++. |++++++++.+ ++++|++++|+||+|.+.|+++|+++
T Consensus        85 l~~ll~~GD~Vlv~~~~y~~~~~~~~~~-~~~g~~v~~~~~-d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~l  162 (385)
T PRK08574         85 FFSLLKAGDRVVLPMEAYGTTLRLLKSL-EKFGVKVVLAYP-STEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKA  162 (385)
T ss_pred             HHHHhCCCCEEEEcCCCchhHHHHHHHh-hccCcEEEEECC-CHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHHHH
Confidence            7788999999999999999988766443 778999888764 68999999987 89999999999999999999999999


Q ss_pred             HHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHH
Q 024619          165 AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL  244 (265)
Q Consensus       165 a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (265)
                      |+++|+++++|++|+.+....+...+.|+++.|++|+++|+.+..+|+++..++.+.+.....+...+..+++..+++++
T Consensus       163 a~~~gi~livD~t~a~~~~~~~l~~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~~~g~~~~p~~a~l~l  242 (385)
T PRK08574        163 AKELGAILVVDNTFATPLLYRPLRHGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIMQPFEAYLVL  242 (385)
T ss_pred             HHHcCCEEEEECCCCccccCChhhhCCcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            99999999999999988776677788999999999999888777789777776677676666666678889999999999


Q ss_pred             hccCchHhhHHHHhhchhcc
Q 024619          245 RGVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       245 ~~l~~~~~~~~~~~~~~~~l  264 (265)
                      ++++++..|++++.+|+..+
T Consensus       243 ~~l~tL~~R~~~~~~na~~l  262 (385)
T PRK08574        243 RGLKTLEVRFERQCRNAMAI  262 (385)
T ss_pred             cccCcHHHHHHHHHHHHHHH
Confidence            99999999999999988764

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=1.3e-34  Score=254.76  Aligned_cols=257  Identities=35%  Similarity=0.621  Sum_probs=219.4

Q ss_pred             CCcceeEeeccCC-CCCCCCCCCCeeeccccccCCCC--------CCCCCccCCCCChhHHHHHHHHHhHhCCCceEEec
Q 024619            7 PGVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFT   77 (265)
Q Consensus         7 ~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~   77 (265)
                      .+.++..++.+.. .+..+...+|++++.++..+...        ....+.|++.++|..+++++.++++.|.+.+++++
T Consensus         7 ~~~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~~i~~s   86 (398)
T PRK08249          7 AGVGTKAVWAGEKEYLPYGATQVPVVLSVAYGYDDIDEWYDVALGKKPGHIYSRNTNPTVQAFEEKVRILEGAEAATAFS   86 (398)
T ss_pred             CCcccceeeCCCCCCCCCCCccCCccCCcceecCCHHHHHHhhcCCcCCccccCCCChHHHHHHHHHHHHhCCCeEEEeC
Confidence            3455677877632 34468899999999998655431        22357899999999999999999999999999999


Q ss_pred             chHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccc
Q 024619           78 SGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQIC  156 (265)
Q Consensus        78 ~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~  156 (265)
                      +|++|+. ++..++++||+|+++.+.|+++...+...++..|++++.++..|++++++++++++++|++++|+||+|.+.
T Consensus        87 sG~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~d~e~l~~~i~~~tklV~ie~p~NPtg~v~  166 (398)
T PRK08249         87 TGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRMGVDVTLCETGDHEQIEAEIAKGCDLLYLETPTNPTLKIV  166 (398)
T ss_pred             ChHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHhhCCeEEEEcCCCCHHHHHHhcCCCCeEEEEECCCCCCCccC
Confidence            9999986 667789999999999999998877776667889999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCC
Q 024619          157 DIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA  236 (265)
Q Consensus       157 ~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~  236 (265)
                      |+++|+++|+++|+++|+|++|+.+....+...+.|+++.|++|+++|+++.++|+++.++ .+.+.+...+...+..++
T Consensus       167 dl~~I~~la~~~gi~livD~t~a~~~~~~~l~~~~Divv~S~sK~l~g~~~~~gG~vv~~~-~l~~~l~~~~~~~g~~~s  245 (398)
T PRK08249        167 DIERLAAAAKKVGALVVVDNTFATPINQNPLALGADLVIHSATKFLSGHADALGGVVCGSK-ELMEQVYHYREINGATMD  245 (398)
T ss_pred             CHHHHHHHHHHcCCEEEEECCcCccccCCchhhCCCEEeccCceecCCCCCceEEEEECCH-HHHHHHHHHHHhcCCCCC
Confidence            9999999999999999999999987766666778999999999999776655678887654 455656666677788999


Q ss_pred             hhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619          237 PFDCWICLRGVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l  264 (265)
                      +..+++++++++++..|++++++|+..+
T Consensus       246 ~~~a~l~l~~l~tL~~R~~~~~~na~~l  273 (398)
T PRK08249        246 PMSAYLILRGMKTLKLRVRQQQESAMAL  273 (398)
T ss_pred             HHHHHHHHhCcchHHHHHHHHHHHHHHH
Confidence            9999999999999999999999888754

>PRK07503 methionine gamma-lyase; Provisional

Probab=100.00  E-value=2.2e-34  Score=253.86  Aligned_cols=256  Identities=38%  Similarity=0.630  Sum_probs=215.6

Q ss_pred             CcceeEeeccC-CCCCCCCCCCCeeeccccccCCCC--------CCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecc
Q 024619            8 GVSTLLMNFSN-EFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTS   78 (265)
Q Consensus         8 ~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~   78 (265)
                      +.++..++.+. ..+..|...||++++.++..+...        ....+.|++.++|..+++++.+++++|++..+++++
T Consensus         9 ~~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~~i~~~s   88 (403)
T PRK07503          9 GFSTRAIHHGYDPLDHGGALVPPVYLTATFAFPTAEYGAECFAGEEEGHFYSRISNPTLALLEQRMASLEGGEAAVALAS   88 (403)
T ss_pred             CccchheeCCCCCCCCCCCccCCcccCcceecCChHHHHHhhccccCCceeeCCCCchHHHHHHHHHHHhCCCcEEEEcC
Confidence            44566777762 234468999999999998655421        224578999999999999999999999999999999


Q ss_pred             hHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCcccccc
Q 024619           79 GMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD  157 (265)
Q Consensus        79 g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~  157 (265)
                      |++|+. ++..++++||+|+++.+.|......+...++..|++++.++..|++++++++.+++++|++++|+||+|.+.|
T Consensus        89 G~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklV~le~p~NPtG~~~d  168 (403)
T PRK07503         89 GMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDLTDPAALKAAISDKTRMVYFETPANPNMRLVD  168 (403)
T ss_pred             HHHHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHhhCCEEEEEeCCCCHHHHHHhcCccCcEEEEeCCCCCCCeeeC
Confidence            999986 6667899999999999999877655556677899999999999999999999989999999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHH--HHHhccCCC
Q 024619          158 IRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF--LQNAEGSGL  235 (265)
Q Consensus       158 l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~--~~~~~~~~~  235 (265)
                      +++|+++|+++|+++|+|++|+.+....+...+.|+++.|++|++++++++++|+++.++ .+.+..+.  .....+..+
T Consensus       169 i~~I~~la~~~gi~lIvD~a~a~~~~~~~l~~g~Di~v~S~tK~l~g~gd~~gG~v~~~~-~l~~~l~~~~~~~~~g~~~  247 (403)
T PRK07503        169 IAAVAEIAHGAGAKVVVDNTYCTPYLQRPLELGADLVVHSATKYLGGHGDITAGLVVGGK-ALADRIRLEGLKDMTGAVM  247 (403)
T ss_pred             HHHHHHHHHHcCCEEEEECCCcccccCCchhhCCCEEEccccccccCCCceeEEEEEcCH-HHHHHHHhhhHHhCcCCCC
Confidence            999999999999999999999988776677778999999999999877778899998554 44444442  244456789


Q ss_pred             ChhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619          236 APFDCWICLRGVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       236 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l  264 (265)
                      ++..+++++++|+++..|++++.+|+..+
T Consensus       248 s~~~a~l~l~~L~tl~~r~~~~~~na~~~  276 (403)
T PRK07503        248 SPFDAFLLMRGLKTLALRMDRHCASAQAV  276 (403)
T ss_pred             CHHHHHHHHcCcchHHHHHHHHHHHHHHH
Confidence            99999999999999999999998887754

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=1.1e-34  Score=255.54  Aligned_cols=258  Identities=31%  Similarity=0.477  Sum_probs=219.8

Q ss_pred             CCcceeEeeccCCCCCCCCCCCCeeeccccccCCCC--------CCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecc
Q 024619            7 PGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTS   78 (265)
Q Consensus         7 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~   78 (265)
                      .++++..++.+...+..|...||++++.++..+...        ....+.|+|.|+|..+++++.++++.|.+.+++++|
T Consensus         5 ~~~~t~~~~~g~~~~~~~~~~~PI~~sst~~f~~~~~~~~~~~~~~~g~~ysR~~nPtv~~lE~~la~leg~~~av~~~S   84 (432)
T PRK06702          5 WGKGTICVQGGYTPKNGEPRVLPLYQSTTYKYDTSDDLAALFNLEAEGYIYTRIGNPTLAAFEQKLAELEGGVGAVATAS   84 (432)
T ss_pred             CCcchHheeCCCCCCCCCCccCCccCCcceecCCHHHHHHHHhccccCceeECCCCcHHHHHHHHHHHHhCCCcEEEECC
Confidence            345677788773233468899999999998655421        123577899999999999999999999999999999


Q ss_pred             hHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC-CCHHHHHhhcCCCceEEEEecCCCCccccc
Q 024619           79 GMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-CDLDEVASAIGPWTKLVWVESPTNPRQQIC  156 (265)
Q Consensus        79 g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~d~~~l~~~~~~~~~~i~~~~~~np~G~~~  156 (265)
                      |++|+. ++.+++++||+|+++.+.|.+....+...+...|+++.+++. .|++++++++++++++|++++|.||++.+.
T Consensus        85 G~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~~l~~~I~~~Tk~I~~e~pgnP~~~v~  164 (432)
T PRK06702         85 GQAAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTADEIVALANDKTKLVYAESLGNPAMNVL  164 (432)
T ss_pred             HHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHhCCcCCeEEEEEcCCCcccccc
Confidence            999996 677889999999999999998887766667889999999998 499999999999999999999999999999


Q ss_pred             cHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeech---------h--------
Q 024619          157 DIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE---------R--------  219 (265)
Q Consensus       157 ~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~---------~--------  219 (265)
                      |+++|+++|+++|+++++|++++.+....|.+.+.||++.|++||++|+.+..+|+++....         .        
T Consensus       165 Di~~I~~iA~~~gi~livD~T~~tP~~~~pl~~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~  244 (432)
T PRK06702        165 NFKEFSDAAKELEVPFIVDNTLATPYLCQAFEHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSY  244 (432)
T ss_pred             CHHHHHHHHHHcCCEEEEECCCCchhhCChhhcCCCEEEEccccccCCCcceeceEEEeCCCcccccccccccccccccc
Confidence            99999999999999999999999888888999999999999999999999999998874221         0        


Q ss_pred             --------------HHHHHHHHHHhccCCCChhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619          220 --------------LAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       220 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l  264 (265)
                                    +...........+..+++.++|+++++|+++..|++++++|+..+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~sp~~a~l~~rgL~Tl~lR~~r~~~Na~~l  303 (432)
T PRK06702        245 HGVSYVQNFGAAAYIVKARVQLLRDYGNCMSPFNAYISNIGLETLHLRMERHSENALAV  303 (432)
T ss_pred             cccchhhccchhhHHHHHHHHHHHHccCCCCHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence                          111122344556789999999999999999999999999998765

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=100.00  E-value=2.8e-34  Score=252.33  Aligned_cols=256  Identities=36%  Similarity=0.617  Sum_probs=215.1

Q ss_pred             cceeEeeccC-CCCCCCCCCCCeeeccccccCCCC--------CCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecch
Q 024619            9 VSTLLMNFSN-EFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSG   79 (265)
Q Consensus         9 ~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g   79 (265)
                      .++..++.+. ..+..|...||++++.++......        ....|.|++.|+|..+++++.+++++|.+..+++++|
T Consensus         4 ~~t~~~~~~~~~~~~~~~~~~pi~~~s~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~av~~~sG   83 (391)
T TIGR01328         4 FATRAIHAGYPPKDQFGALTPPIYQTSTFVFDSCEQGGNRFAGQESGYIYSRLGNPTVSNLEGRIAFLEGTEAAVATSSG   83 (391)
T ss_pred             cccceeeCCccCCCCCCCccCCcccCcceecCChHHHHHhhcCCcCCCceeCCCCchHHHHHHHHHHHhCCCcEEEECCH
Confidence            3466777772 234468999999999998655421        2235789999999999999999999999999999999


Q ss_pred             HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccH
Q 024619           80 MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI  158 (265)
Q Consensus        80 ~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l  158 (265)
                      ++|+. ++..++++||+|+++.+.|+.....+...+...|+++.+++.+|++++++++.+++++|++++|+||+|.+.|+
T Consensus        84 ~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~~~~vd~~d~e~l~~~i~~~tklV~le~p~Np~G~v~dl  163 (391)
T TIGR01328        84 MGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKFGIQVDFINMAIPEEVKAHIKDNTKIVYFETPANPTMKLIDM  163 (391)
T ss_pred             HHHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhhccCCeEEEEECCCCCCCcccCH
Confidence            98886 66778999999999999998877777777788999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHH-HhccCCCCh
Q 024619          159 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-NAEGSGLAP  237 (265)
Q Consensus       159 ~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~-~~~~~~~~~  237 (265)
                      ++|+++|+++|+++++|++|+.+....+...+.|+++.|++|+++++++.++|+++.+++.+........ ...+..+++
T Consensus       164 ~~I~~la~~~gi~livD~a~a~~~~~~~~~~g~Divv~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~~~~~~g~~l~~  243 (391)
T TIGR01328       164 ERVCRDAHSQGVKVIVDNTFATPMLTNPVALGVDVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKDMTGSVISP  243 (391)
T ss_pred             HHHHHHHHHcCCEEEEECCCchhccCCchhcCCCEEEccccccccCCCCceEEEEEcCHHHHHHHHHHHHHhCCCCCCCc
Confidence            9999999999999999999998887777788999999999999987766668888776654433322222 234667889


Q ss_pred             hHHHHHHhccCchHhhHHHHhhchhcc
Q 024619          238 FDCWICLRGVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       238 ~~~~~~~~~l~~~~~~~~~~~~~~~~l  264 (265)
                      ..+++++++|+++..|++++.+|+..+
T Consensus       244 ~~a~l~l~~L~tl~~r~~~~~~na~~l  270 (391)
T TIGR01328       244 FDAWLILRGLKTLNIRMKRHSENAMKV  270 (391)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHHH
Confidence            999999999999999999998887654

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=100.00  E-value=5e-34  Score=251.26  Aligned_cols=261  Identities=33%  Similarity=0.522  Sum_probs=220.0

Q ss_pred             CCCCCcceeEeeccCCCCCCCCCCCCeeeccccccCCC--------CCCCCCccCCCCChhHHHHHHHHHhHhCCCceEE
Q 024619            4 EEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSA--------TENGPYDYTRSGNPTRDALESLLAKLDKADRALC   75 (265)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--------~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~   75 (265)
                      .+..+..+..++.+...+.++...+|++...++.....        .....+.|++.++|..+++++.+++++|.+..++
T Consensus         6 ~~~~~~~t~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~Le~~lA~l~G~~~~~~   85 (398)
T PRK07504          6 ARKWRPATRLVHSGTLRSQFGETSEALFLTQGFVYDTAEAAEARFKGEDPGFIYSRYSNPTVDMFEKRMCALEGAEDARA   85 (398)
T ss_pred             cccCCcccceeeCCCCCCCCCCCcCCeECCCCccCCCHHHHHHHhccCcCCceeecCCCchHHHHHHHHHHHhCCCeeeE
Confidence            34455567777777434557888889999987754331        1234577899899999999999999999998889


Q ss_pred             ecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccc
Q 024619           76 FTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQ  154 (265)
Q Consensus        76 ~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~  154 (265)
                      +++|++|+. ++..++++||+|+++++.|+++...+...++..|++++.++..|++++++++.+++++|++++|+||+|.
T Consensus        86 ~~sG~~Ai~~~l~~~l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~l~~ai~~~tklV~lesp~NptG~  165 (398)
T PRK07504         86 TASGMAAVTAAILCQVKAGDHVVAARALFGSCRYVVETLLPRYGIESTLVDGLDLDNWEKAVRPNTKVFFLESPTNPTLE  165 (398)
T ss_pred             ecCHHHHHHHHHHHHhCCCCEEEEcCCchhHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCcE
Confidence            999998885 6677899999999999999988776666677889999999988999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCC
Q 024619          155 ICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG  234 (265)
Q Consensus       155 ~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~  234 (265)
                      +.|+++|.++|+++|+++++|++|+.+....+...+.|+++.|++|+++|++...+|+++.+++.+.+.........+..
T Consensus       166 v~dl~~I~~la~~~gi~lvvD~a~a~~~~~~~~~~gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~~~~g~~  245 (398)
T PRK07504        166 VIDIAAVAKIANQAGAKLVVDNVFATPLFQKPLELGAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFRHTGPS  245 (398)
T ss_pred             ecCHHHHHHHHHHcCCEEEEECCccccccCCchhhCCCEEEeeccccccCCccceEEEEEeCcHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999998877777788999999999999977654556788877766655455555567788


Q ss_pred             CChhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619          235 LAPFDCWICLRGVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       235 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l  264 (265)
                      +++..++.++++|+++..|++++.+|++.+
T Consensus       246 ~s~~~A~~~l~~L~tl~~R~~~~~~na~~l  275 (398)
T PRK07504        246 LSPFNAWTLLKGLETLPVRVRQQTESAAAI  275 (398)
T ss_pred             CCHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998764

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=5e-34  Score=252.78  Aligned_cols=264  Identities=35%  Similarity=0.513  Sum_probs=221.9

Q ss_pred             CCCCCCCCcceeEeeccCC-CCCCCCCCCCeeeccccccCCCC--------CCCCCccCCCCChhHHHHHHHHHhHhCCC
Q 024619            1 MSVEEEPGVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKAD   71 (265)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~   71 (265)
                      |-+|+..+.++..++.+.. .+..|...+|++++.++..+...        ....+.|+|.++|..+++++.++++.|.+
T Consensus         1 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~y~R~~~p~~~~le~~lA~l~g~~   80 (433)
T PRK08134          1 MPGMSPPGFDTLALHAGAAPDPATGARAVPIHLTTSFVFRDSDHAAALFNLERAGHVYSRISNPTVAVLEERVAALEGGV   80 (433)
T ss_pred             CCCCCCCCcchhheeCCCCCCCCCCCccCCccCCCccccCCHHHHHHhhcccccCceeecCcChHHHHHHHHHHHHhCCC
Confidence            5678888888888888732 33468899999999998655421        23457899999999999999999999999


Q ss_pred             ceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCC
Q 024619           72 RALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTN  150 (265)
Q Consensus        72 ~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~n  150 (265)
                      ..++++||++|+. ++..++++||+|+++...|++....+...++..|+++++++..|++++++++++++++|++++++|
T Consensus        81 ~av~~sSGt~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~~~l~~~i~~~TklV~~e~~~n  160 (433)
T PRK08134         81 GAIATASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRRFGIETTFVKPGDIDGWRAAIRPNTRLLFGETLGN  160 (433)
T ss_pred             cEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEECCCCHHHHHHhcCCCCeEEEEECCCc
Confidence            8999999999986 667789999999999999998877665666788999999999999999999999999999999999


Q ss_pred             CccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhH----------
Q 024619          151 PRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL----------  220 (265)
Q Consensus       151 p~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~----------  220 (265)
                      |+|.+.|+++|+++|+++|+++++|.+++.+....+...+.|+++.|.+||++|++...+|+++......          
T Consensus       161 p~g~v~Di~~I~~la~~~gi~livD~t~a~~~~~~pl~~GaD~vv~S~tK~l~g~g~~~gG~v~~~~~~~~~~~~~~~~~  240 (433)
T PRK08134        161 PGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPYLLRPFEHGADLVYHSATKFLGGHGTAIGGVLVDGGRFDWEASGKFPEL  240 (433)
T ss_pred             ccCcccCHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCEEEeccccccCCCCCceEEEEEecCccccccccccccc
Confidence            9999999999999999999999999999999888888889999999999999877777778776421100          


Q ss_pred             ----------------------HHHHHHHHHhccCCCChhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619          221 ----------------------AKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       221 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l  264 (265)
                                            .+.........+..+++.++|+++++|+++..|++++.+|+.++
T Consensus       241 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~ls~~~A~l~~~gL~tl~~R~~~~~~nA~~l  306 (433)
T PRK08134        241 TEPYAGFHGMVFAEESTVAAFLLRARREGLRDFGACLSPMNAWQLLQGIETLPLRMERHVANTRKV  306 (433)
T ss_pred             cCCcccccccchhhccchhHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence                                  00111122345678999999999999999999999999998765

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=100.00  E-value=3.4e-34  Score=250.63  Aligned_cols=241  Identities=54%  Similarity=0.862  Sum_probs=211.0

Q ss_pred             CCCCCCeeeccccccCCCC--------CCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHhcCCCC
Q 024619           24 GALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGE   94 (265)
Q Consensus        24 g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~~~~g~   94 (265)
                      |+..||++++.++..+...        ....+.|++.++|..+++++.+++++|.++.+++++|++|+. ++..++++||
T Consensus         1 ~~~~~pi~~~~t~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~la~l~g~~~a~~~~sG~~Ai~~~l~~l~~~gd   80 (369)
T cd00614           1 GAVAPPIYQTSTFVFPSPAEAADLFALREGGYIYSRIGNPTVDALEKKLAALEGGEAALAFSSGMAAISTVLLALLKAGD   80 (369)
T ss_pred             CCcCCCccCCCceecCCHHHHHHhhcCCcCCceeECCCChhHHHHHHHHHHHHCCCCEEEEcCHHHHHHHHHHHHcCCCC
Confidence            3567888888887654421        234688999999999999999999999999999999999986 7778899999


Q ss_pred             EEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEE
Q 024619           95 EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV  174 (265)
Q Consensus        95 ~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~  174 (265)
                      +|+++.+.|++....+...++..|+++..++.+|++++++++++++++|++++|+||+|.+.|+++|+++|+++|+++++
T Consensus        81 ~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~liv  160 (369)
T cd00614          81 HVVASDDLYGGTYRLFERLLPKLGIEVTFVDPDDPEALEAAIKPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVV  160 (369)
T ss_pred             EEEECCCCcchHHHHHHHHHhhcCeEEEEeCCCCHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEE
Confidence            99999999999887776677788999999999999999999988999999999999999999999999999999999999


Q ss_pred             eCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccCchHhhH
Q 024619          175 DNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRV  254 (265)
Q Consensus       175 D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  254 (265)
                      |++|+.+....+...+.|+++.|++|+++|++++++|+++.+++.+.+.+.......+..+++..++.++++++++..++
T Consensus       161 D~t~~~~~~~~~~~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l~tl~~r~  240 (369)
T cd00614         161 DNTFATPYLQRPLELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLKTLPLRM  240 (369)
T ss_pred             ECCCcchhcCChhhhCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHhhCCCCCHHHHHHHHcCCCCHHHHH
Confidence            99999887767778899999999999998777788999998774565666666666778899999999999999999999


Q ss_pred             HHHhhchhcc
Q 024619          255 EKQQVCFFDL  264 (265)
Q Consensus       255 ~~~~~~~~~l  264 (265)
                      +++.+|+..+
T Consensus       241 ~~~~~na~~l  250 (369)
T cd00614         241 ERHSENALKV  250 (369)
T ss_pred             HHHHHHHHHH
Confidence            9999888764

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>PRK06234 methionine gamma-lyase; Provisional

Probab=100.00  E-value=5.6e-34  Score=251.26  Aligned_cols=259  Identities=38%  Similarity=0.645  Sum_probs=217.3

Q ss_pred             CCCCcceeEeeccC-CCCCCCCCCCCeeeccccccCCCC--------CCCCCccCCCCChhHHHHHHHHHhHhCCCceEE
Q 024619            5 EEPGVSTLLMNFSN-EFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALC   75 (265)
Q Consensus         5 ~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~   75 (265)
                      +..+.++..++.+. ..+..++..+|++++.++..+...        ....+.|++.++|...++++.+++++|.+++++
T Consensus         5 ~~~~~~t~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~r~~~p~~~~Le~~iA~~~g~~~~l~   84 (400)
T PRK06234          5 KKMGFATKAIHGGHIGDKQFGSLATPIYQTSTFIFDSAEQGGRRFAGEESGYIYSRLGNPTSTEVENKLALLEGGEAAVV   84 (400)
T ss_pred             ccCCccchheECCCCCCCCCCCccCCcccccceecCChHHHHHhhccCcCCCcccCCCCccHHHHHHHHHHHhCCCcEEE
Confidence            44455666777762 234468899999999987654432        133466999999999999999999999999999


Q ss_pred             ecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccc
Q 024619           76 FTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQ  154 (265)
Q Consensus        76 ~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~  154 (265)
                      +++|++|+. ++..++++||+|+++.|.|+.+...+...++..|++++.++..|++++++++.+++++|++++|+||+|.
T Consensus        85 ~~sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~l~~~i~~~tklI~iesP~NPtG~  164 (400)
T PRK06234         85 AASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVDTSNLEEVRNALKANTKVVYLETPANPTLK  164 (400)
T ss_pred             EcCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhhCCeEEEEECCCCHHHHHHHhccCCeEEEEECCCCCCCC
Confidence            999998886 6778899999999999999988877666678899999999999999999999989999999999999999


Q ss_pred             cccHHHHHHHHHHc--CCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHH--HHHh
Q 024619          155 ICDIRKIAEMAHAH--GALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF--LQNA  230 (265)
Q Consensus       155 ~~~l~~i~~~a~~~--~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~--~~~~  230 (265)
                      +.|+++|.++|+++  |+++++|++|+.+....+...+.|+++.|++|++++++..++|+++++++.+ +.+..  ....
T Consensus       165 v~dl~~I~~la~~~~~~i~livDea~~~~~~~~~l~~g~Divv~S~sK~l~g~g~~~gG~v~~~~~~~-~~l~~~~~~~~  243 (400)
T PRK06234        165 VTDIKAISNIAHENNKECLVFVDNTFCTPYIQRPLQLGADVVVHSATKYLNGHGDVIAGFVVGKEEFI-NQVKLFGIKDM  243 (400)
T ss_pred             cCCHHHHHHHHHhcCCCCEEEEECCCCchhcCCchhhCCcEEEeeccccccCCCCceeEEEEecHHHH-HHHHHHHHHHh
Confidence            99999999999997  9999999999988877777778999999999999766656679998877543 43332  2335


Q ss_pred             ccCCCChhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619          231 EGSGLAPFDCWICLRGVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       231 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l  264 (265)
                      .+..+++..+++.+++|+++..+++++.+|+..+
T Consensus       244 ~g~~l~p~~a~l~~~~l~tl~~r~~~~~~na~~~  277 (400)
T PRK06234        244 TGSVIGPFEAFLIIRGMKTLQIRMEKHCKNAMKV  277 (400)
T ss_pred             cCCCCCHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence            5788999999999999999999999999888653

>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=100.00  E-value=3e-34  Score=244.11  Aligned_cols=256  Identities=46%  Similarity=0.695  Sum_probs=232.7

Q ss_pred             cceeEeeccCCCCC--CCCCCCCee--eccccccC-CCCC-CCC---CccCCCCChhHHHHHHHHHhHhCCCceEEecch
Q 024619            9 VSTLLMNFSNEFDP--YGALSTPLY--QTATFKQP-SATE-NGP---YDYTRSGNPTRDALESLLAKLDKADRALCFTSG   79 (265)
Q Consensus         9 ~~~~~~~~~~~~~~--~g~~~~~~~--~~~~~~~~-~~~~-~~~---~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g   79 (265)
                      .++..++.+..++.  .+...+|+.  ...+|... .... ...   +.|+|.|+|.+..+++.++.+.|++..++++||
T Consensus        22 ~~t~~~~~g~~~~~~~~~~v~~pI~~~~s~tfk~~~~~~~~~~~~~~~~Ysr~~nPt~~~le~~iaal~ga~~~l~fsSG  101 (409)
T KOG0053|consen   22 LDTNLLHAGQDPEKAIHNAVAPPIYATLSTTFKQDLNEGEHGGNLDGYDYSRSGNPTRDVLESGIAALEGAAHALLFSSG  101 (409)
T ss_pred             cchhhhhcccccchhccccccCceecccceeecccCccccccccccccccccCCCCchHHHHHHHHHHhCCceEEEeccc
Confidence            55667777766566  788999999  66666554 2222 223   899999999999999999999999999999999


Q ss_pred             HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccH
Q 024619           80 MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI  158 (265)
Q Consensus        80 ~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l  158 (265)
                      +.|+. +++.++.+|++|+..+..|..+.+.++.....+|++..++++++++++++++.+++++|++++|.||++.+.|+
T Consensus       102 maA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~~~~~~~~~~i~~~t~~V~~ESPsNPll~v~DI  181 (409)
T KOG0053|consen  102 MAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDVDDLKKILKAIKENTKAVFLESPSNPLLKVPDI  181 (409)
T ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCceeeeechhhHHHHHHhhccCceEEEEECCCCCccccccH
Confidence            98875 78888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChh
Q 024619          159 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF  238 (265)
Q Consensus       159 ~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~  238 (265)
                      ++|.++|+++|+++++|++.+.+...+++..|+||++.|++||++|+..+++|.++.+.......++..+...+..++|.
T Consensus       182 ~~l~~la~~~g~~vvVDnTf~~p~~~~pL~lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~~~lg~~~~p~  261 (409)
T KOG0053|consen  182 EKLARLAHKYGFLVVVDNTFGSPYNQDPLPLGADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQEDLGWCEDPF  261 (409)
T ss_pred             HHHHHHHhhCCCEEEEeCCcCcccccChhhcCCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHHHHHHhcCCCCHH
Confidence            99999999999999999999999888999999999999999999999999999999988888899999999999999999


Q ss_pred             HHHHHHhccCchHhhHHHHhhchhcc
Q 024619          239 DCWICLRGVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       239 ~~~~~~~~l~~~~~~~~~~~~~~~~l  264 (265)
                      .+|+..|.++++..|+.++.+|++.+
T Consensus       262 ~~~ll~Rglktl~lRi~~~~ena~~~  287 (409)
T KOG0053|consen  262 DLFLLSRGLKTLHLRINKHSENALKI  287 (409)
T ss_pred             HHHHHhcCcchhhhhHHHHHHHHHHH
Confidence            99999999999999999999997653

>PRK05939 hypothetical protein; Provisional

Probab=100.00  E-value=9.6e-34  Score=248.93  Aligned_cols=240  Identities=33%  Similarity=0.542  Sum_probs=203.3

Q ss_pred             CCCCCCeeeccccccCCCC--------CCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHhcCCCC
Q 024619           24 GALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGE   94 (265)
Q Consensus        24 g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~~~~g~   94 (265)
                      |...||++++.++..+...        ....+.|+|.|+|..+++++.++++.|.+..+++++|++|+. ++..++++||
T Consensus         8 ~~~~~pi~~~~t~~~~~~~~~~~~~~~~~~~~~Y~r~g~p~~~~lE~~la~leg~~~~v~~ssG~~Ai~~~l~all~~Gd   87 (397)
T PRK05939          8 GAVHKPIHTSVTYGYEDARDLIDVFQGKKPGFTYARQGTPTTAALEAKITKMEGGVGTVCFATGMAAIAAVFLTLLRAGD   87 (397)
T ss_pred             CCccCCccCCCCeecCCHHHHHHhhcCCcCCCCcCCCCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHcCCCC
Confidence            7788999999998654421        223578999999999999999999999999999999999986 6778899999


Q ss_pred             EEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEE
Q 024619           95 EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV  174 (265)
Q Consensus        95 ~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~  174 (265)
                      +|+++++.|+++...+.. ++..|++++.++..|++++++++.+++++|++++|+||+|.+.|+++|+++|+++|+++++
T Consensus        88 ~Vv~~~~~y~~t~~~~~~-l~~~G~~v~~v~~~d~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~liv  166 (397)
T PRK05939         88 HLVSSQFLFGNTNSLFGT-LRGLGVEVTMVDATDVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVV  166 (397)
T ss_pred             EEEECCCccccHHHHHHH-HHhcCCEEEEECCCCHHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEE
Confidence            999999999988766633 5678999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeech--------h-------------HHHHHHHHHHhccC
Q 024619          175 DNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE--------R-------------LAKELYFLQNAEGS  233 (265)
Q Consensus       175 D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~--------~-------------~~~~~~~~~~~~~~  233 (265)
                      |++|+.+....+...+.|+++.|++|+++|+++.++|+++.+..        .             +...........+.
T Consensus       167 D~t~a~~~~~~~~~~gaDivv~S~sK~~~g~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  246 (397)
T PRK05939        167 DNTMTSPWLFRPKDVGASLVINSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGLRDMGA  246 (397)
T ss_pred             ECCcccccccCccccCCEEEEecCeecccCCCCeEEEEEecCcccccccccchhhhhhccchhhHHHHHHHHHHHHhcCC
Confidence            99998877666778899999999999998887776776653221        0             11111122335688


Q ss_pred             CCChhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619          234 GLAPFDCWICLRGVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       234 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l  264 (265)
                      .+++.++|+++++++++..|++++.+|+..+
T Consensus       247 ~~~p~~a~l~~rgl~tl~~R~~~~~~na~~l  277 (397)
T PRK05939        247 TLSSEAAHRIAIGAETLALRVDRSCSNALAL  277 (397)
T ss_pred             CCCHHHHHHHHcCcCcHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999998765

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=100.00  E-value=1.1e-33  Score=248.68  Aligned_cols=256  Identities=37%  Similarity=0.628  Sum_probs=214.3

Q ss_pred             CcceeEeeccCCCCCCCCCCCCeeeccccccCCCC--------CCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecch
Q 024619            8 GVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSG   79 (265)
Q Consensus         8 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g   79 (265)
                      +.++..++.+...+..+...+|+++..++......        ....+.|++.++|..+++++.+++++|.++++++++|
T Consensus         6 ~~~t~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~la~l~g~~~~v~~ssG   85 (390)
T PRK08133          6 GFDTLAVRAGQLRSPFGEHSEALFLTSSFVFESAAEAAARFAGEEPGNIYSRFTNPTVTMFQERLAALEGAEACVATASG   85 (390)
T ss_pred             CcchhheeCCCCCCCCCCccCCccCCCCcccCCHHHHHHhhcCCcCCceeECCCChHHHHHHHHHHHHhCCCcEEEECCH
Confidence            34566777774345578888899999887544321        1234678988999999999999999999999999999


Q ss_pred             HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccH
Q 024619           80 MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI  158 (265)
Q Consensus        80 ~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l  158 (265)
                      ++|+. ++..++++||+|+++.+.|++....+...++..|++++.++.+|++++++++.+++++|++++|+||+|.+.|+
T Consensus        86 ~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklV~ie~p~NptG~v~dl  165 (390)
T PRK08133         86 MAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDLTDLDAWRAAVRPNTKLFFLETPSNPLTELADI  165 (390)
T ss_pred             HHHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCCcCCH
Confidence            99986 67788999999999999999887766666778899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChh
Q 024619          159 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF  238 (265)
Q Consensus       159 ~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~  238 (265)
                      ++|+++|+++|+++++|++|+.+....+...+.|+++.|++|++++++...+|+++.+++.+ ..........+..+++.
T Consensus       166 ~~I~~la~~~gi~livD~t~~~~~~~~pl~~g~Divv~S~sK~~~g~g~~~GG~vv~~~~~~-~~~~~~~~~~g~~~~~~  244 (390)
T PRK08133        166 AALAEIAHAAGALLVVDNCFCTPALQQPLKLGADVVIHSATKYLDGQGRVLGGAVVGSKELM-EEVFGFLRTAGPTLSPF  244 (390)
T ss_pred             HHHHHHHHHcCCEEEEECCCcccccCCchhhCCcEEEeecceeecCCcceEeEEEEcCHHHH-HHHHHHHHHhCCCCCHH
Confidence            99999999999999999999888777777778999999999999665444568888776544 43444455567788899


Q ss_pred             HHHHHHhccCchHhhHHHHhhchhcc
Q 024619          239 DCWICLRGVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       239 ~~~~~~~~l~~~~~~~~~~~~~~~~l  264 (265)
                      .++.++++++++..|++++.+|+..+
T Consensus       245 ~a~~~l~gl~tl~~R~~~~~~~a~~l  270 (390)
T PRK08133        245 NAWVFLKGLETLSLRMEAHSANALAL  270 (390)
T ss_pred             HHHHHHcccchHHHHHHHHHHHHHHH
Confidence            99999999999999999999887754

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=1.6e-33  Score=249.39  Aligned_cols=258  Identities=36%  Similarity=0.534  Sum_probs=216.7

Q ss_pred             CCcceeEeeccC-CCCCCCCCCCCeeeccccccCCCC--------CCCCCccCCCCChhHHHHHHHHHhHhCCCceEEec
Q 024619            7 PGVSTLLMNFSN-EFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFT   77 (265)
Q Consensus         7 ~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~   77 (265)
                      .+.++..++.+. ..+..+...||++++.++..+...        ....+.|+|.++|..+.+++.++++.|.+..++++
T Consensus        12 ~~~~t~~~~~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Ysr~~~p~~~~Le~~lA~l~g~~~av~~s   91 (436)
T PRK07812         12 WSFETKQIHAGQTPDPATNARALPIYQTTSYTFDDTDHAAALFGLAEPGNIYTRIMNPTQDVVEQRIAALEGGVAALLLA   91 (436)
T ss_pred             CCcchhheeCCCCCCCCCCCccCCCcCCCCcccCCHHHHHHhhcCCcCCccccCCCCchHHHHHHHHHHHhCCCeEEEEc
Confidence            445566777762 233368899999999998765421        22457799999999999999999999999999999


Q ss_pred             chHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeec-CCCHHHHHhhcCCCceEEEEecCCCCcccc
Q 024619           78 SGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN-TCDLDEVASAIGPWTKLVWVESPTNPRQQI  155 (265)
Q Consensus        78 ~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~d~~~l~~~~~~~~~~i~~~~~~np~G~~  155 (265)
                      +|++|+. ++.+++++||+|+++...|.+....+...++..|++++.++ ..|++++++++++++++|++++++||+|.+
T Consensus        92 SG~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vdd~~d~e~l~~ai~~~tklV~ie~~sNp~G~v  171 (436)
T PRK07812         92 SGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVEDPDDLDAWRAAVRPNTKAFFAETISNPQIDV  171 (436)
T ss_pred             cHHHHHHHHHHHHhCCCCEEEEeCCcchHHHHHHHHHhhcCeEEEEEECCCCCHHHHHHhCCCCCeEEEEECCCCCCCee
Confidence            9999985 77888999999999999998887666666778899999996 668999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechh----------------
Q 024619          156 CDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER----------------  219 (265)
Q Consensus       156 ~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~----------------  219 (265)
                      .|+++|.++|+++|+++++|++++.+....+...+.|+++.|++|+++|+++..+|+++.....                
T Consensus       172 ~Dl~~I~~la~~~gi~liVD~t~a~~~~~~pl~~GaDivv~S~tK~lgg~G~~i~G~vv~~~~~~~~~~~~~~~~~~~~~  251 (436)
T PRK07812        172 LDIPGVAEVAHEAGVPLIVDNTIATPYLIRPLEHGADIVVHSATKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDPS  251 (436)
T ss_pred             cCHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCEEEEecccccCCCCCeEEEEEEcCCccccccccccccccCCcc
Confidence            9999999999999999999999998888888888999999999999988888888888753310                


Q ss_pred             --------------HHHHHHHHHHhccCCCChhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619          220 --------------LAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       220 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l  264 (265)
                                    +.+.........|..+++.++|+++++|+++..|++++.+|+.++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~rgl~tL~~R~~~~~~nA~~l  310 (436)
T PRK07812        252 YHGVVFAELGPPAYALKARVQLLRDLGSAISPFNAFLIAQGLETLSLRIERHVANAQRV  310 (436)
T ss_pred             cccchhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHhcCcCcHHHHHHHHHHHHHHH
Confidence                          011122344567899999999999999999999999999999875

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=1.7e-33  Score=249.28  Aligned_cols=254  Identities=36%  Similarity=0.560  Sum_probs=212.5

Q ss_pred             eeEeeccC-CCCCCCCCCCCeeeccccccCCCC--------CCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHH
Q 024619           11 TLLMNFSN-EFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMA   81 (265)
Q Consensus        11 ~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~   81 (265)
                      +..++.+. ..+..++..+|++++.++..+...        ....+.|+|.++|..+++++.++++.|.+..+++++|++
T Consensus         5 t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~r~~~pt~~~Le~~lA~l~g~~~~l~~ssG~~   84 (425)
T PRK06084          5 TLAIHAGYSPDPTTKAVAVPIYQTTSYAFDDTQHGADLFDLKVPGNIYTRIMNPTNDVLEQRVAALEGGVGALAVASGMA   84 (425)
T ss_pred             hhheeCCcCCCCCCCCccCCEeCCCCcccCCHHHHHHhhccccCCccccCCCCchHHHHHHHHHHHhCCCceeEehhHHH
Confidence            44566552 233458889999999998665431        223578999999999999999999999999999999999


Q ss_pred             HHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHH
Q 024619           82 ALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRK  160 (265)
Q Consensus        82 al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~  160 (265)
                      |+. ++..++++||+|+++.+.|++....+...++..|+++.+++..|++++++++.+++++|++++|+||+|.+.|+++
T Consensus        85 Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~d~~d~e~le~ai~~~tklV~lesp~NPtG~v~dl~~  164 (425)
T PRK06084         85 AITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAAHDDIAALEALIDERTKAVFCESIGNPAGNIIDIQA  164 (425)
T ss_pred             HHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHhcccceeEEEEECCCCHHHHHHHhccCCcEEEEeCCCCCCCeecCHHH
Confidence            996 6778899999999999999987766666667789999999999999999999989999999999999999999999


Q ss_pred             HHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhH-H------------------
Q 024619          161 IAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL-A------------------  221 (265)
Q Consensus       161 i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~-~------------------  221 (265)
                      |+++|+++|+++|+|++|+.+....+...+.|+++.|++|+++|++...+|+++.+.... .                  
T Consensus       165 I~~la~~~~i~vVvD~a~a~~~~~~p~~~gaDivv~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (425)
T PRK06084        165 LADAAHRHGVPLIVDNTVATPVLCRPFEHGADIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPSYHG  244 (425)
T ss_pred             HHHHHHHcCCEEEEECCCcccccCChhhcCCCEEEECchhcccccccceeEEEEeCCccchhhccccccccccCCccccc
Confidence            999999999999999999988887788889999999999999988888788887533210 0                  


Q ss_pred             --------------HHHHHHHHhccCCCChhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619          222 --------------KELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       222 --------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l  264 (265)
                                    ..........+..+++.++|+++++|+++..|++++++|+.++
T Consensus       245 ~~~~~~~g~~~~~~~~~~~~~~~~g~~l~~~~a~l~lrgl~tl~~R~~~~~~na~~l  301 (425)
T PRK06084        245 VTYTEAFGPAAFIGRCRVVPLRNMGAALSPFNAFLILQGLETLALRMERHTENALKV  301 (425)
T ss_pred             chhhhhcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcCcHHHHHHHHHHHHHHH
Confidence                          0011223456788999999999999999999999999998865

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=3.8e-33  Score=247.48  Aligned_cols=257  Identities=35%  Similarity=0.533  Sum_probs=214.8

Q ss_pred             CcceeEeeccC-CCCCCCCCCCCeeeccccccCCCC--------CCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecc
Q 024619            8 GVSTLLMNFSN-EFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTS   78 (265)
Q Consensus         8 ~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~   78 (265)
                      +.++..++.+. .....|...+|+.++.++..+...        ....+.|++.++|..+++++.++++.|.+..+++++
T Consensus         7 ~~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~al~~~S   86 (427)
T PRK05994          7 GFATLAVHAGAQPDPTTGARATPIYQTTSFVFNDADHAASLFGLQAFGNIYTRITNPTNAVLEERVAALEGGTAALAVAS   86 (427)
T ss_pred             CcchhheECCcCCCCCCCCccCCCcCCCCcccCCHHHHHHhhccccCCcceECCCCccHHHHHHHHHHHhCCCcEEEEcC
Confidence            45566777762 233458888999999998654421        123467999999999999999999999999999999


Q ss_pred             hHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCcccccc
Q 024619           79 GMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD  157 (265)
Q Consensus        79 g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~  157 (265)
                      |++|+. ++.+++++||+|+++.+.|++....+...++..|++++.++..|++++++++++++++|++++|+||+|.+.|
T Consensus        87 G~~Ai~~al~all~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ai~~~tklV~vesp~NptG~v~d  166 (427)
T PRK05994         87 GHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADADDPASFERAITPRTKAIFIESIANPGGTVTD  166 (427)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCeecC
Confidence            999986 6777899999999999999988766666677889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeech-h-----------------
Q 024619          158 IRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE-R-----------------  219 (265)
Q Consensus       158 l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~-~-----------------  219 (265)
                      +++|+++|+++|+++++|++++.+....+...+.|+++.|++|+++|+.+..+|+++.... .                 
T Consensus       167 l~~I~~la~~~gi~livD~a~a~~~~~~pl~~gaDivv~S~tK~lgg~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~~~~  246 (427)
T PRK05994        167 IAAIAEVAHRAGLPLIVDNTLASPYLIRPIEHGADIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPEY  246 (427)
T ss_pred             HHHHHHHHHHcCCEEEEECCccccccCCccccCCcEEEEcCccccCCCCCcEEEEEEeCCccccccccccccccCCcchh
Confidence            9999999999999999999999888878888899999999999999888888888874221 0                 


Q ss_pred             ----HHH----------HHHHHHHhccCCCChhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619          220 ----LAK----------ELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       220 ----~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l  264 (265)
                          +.+          .........+..+++.++|+++++|+++..|++++++|+..+
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~~l~tL~~r~~~~~~~a~~l  305 (427)
T PRK05994        247 HGLVLHETFGNFAFAIAARVLGLRDLGPAISPFNAFLILTGIETLPLRMQRHSDNALAV  305 (427)
T ss_pred             hhhhHHHHhhhhhhHHHHHHHHHHhcCCCCCHHHHHHHHcCcccHHHHHHHHHHHHHHH
Confidence                111          111123456778999999999999999999999999998764

>PRK07582 cystathionine gamma-lyase; Validated

Probab=100.00  E-value=5.4e-33  Score=242.44  Aligned_cols=253  Identities=34%  Similarity=0.502  Sum_probs=211.1

Q ss_pred             CcceeEeeccCC-CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-H
Q 024619            8 GVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-A   85 (265)
Q Consensus         8 ~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~   85 (265)
                      +.++..++.+.. .+..|...+|++++.++..+.......+.|++.++|...++++.+++++ .++.+++++|++|+. +
T Consensus         3 ~~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~y~ry~~p~~~~Le~~lA~l~-~~~~v~~~sG~~Ai~~~   81 (366)
T PRK07582          3 GDGTRSVHAGGPEAVPGEPVLPGPVFAAPYHLSPGEPTGPDTYGRASNPTWRALEAALGELE-GAEALVFPSGMAAITAV   81 (366)
T ss_pred             CcccceeeCCCCCCCCCCCccCCccccceEEccCccccCCceeECCCCccHHHHHHHHHHHc-CCCEEEECCHHHHHHHH
Confidence            445666776622 2336889999999999876643233457799999999999999999999 667999999998886 6


Q ss_pred             HHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHH
Q 024619           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA  165 (265)
Q Consensus        86 ~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a  165 (265)
                      +.+++++||+|++.+|.|..+...+...++..|++++.++..+...   .+.+++++|++++|+||+|.+.|+++|+++|
T Consensus        82 l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~~~~~---~~~~~t~lV~le~p~NPtg~v~di~~I~~~a  158 (366)
T PRK07582         82 LRALLRPGDTVVVPADGYYQVRALAREYLAPLGVTVREAPTAGMAE---AALAGADLVLAETPSNPGLDVCDLAALAAAA  158 (366)
T ss_pred             HHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCeEEEEEECCCChHH---HhccCceEEEEECCCCCCCCccCHHHHHHHH
Confidence            6778999999999999998887655455677899999999775432   3346899999999999999999999999999


Q ss_pred             HHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHh
Q 024619          166 HAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR  245 (265)
Q Consensus       166 ~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (265)
                      +++|+++++|++|+.+....+.+.+.|+++.|++||++|++|+++|+++.+++.+.+.....+...+..+++..++++++
T Consensus       159 ~~~g~~lvVD~t~~~~~~~~p~~~g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~a~l~~r  238 (366)
T PRK07582        159 HAAGALLVVDNTTATPLGQRPLELGADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVERWRLLAGAIPGPFEAWLAHR  238 (366)
T ss_pred             HHcCCEEEEECCCCCccccCchhcCCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHHHHHHhCCCCCHHHHHHHHh
Confidence            99999999999997654445666788999999999999999999999988766777767777777788899999999999


Q ss_pred             ccCchHhhHHHHhhchhcc
Q 024619          246 GVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       246 ~l~~~~~~~~~~~~~~~~l  264 (265)
                      +++++..|++++.+|+..+
T Consensus       239 ~l~tl~~R~~~~~~na~~l  257 (366)
T PRK07582        239 SLGTLGLRFARQCANALAV  257 (366)
T ss_pred             ccccHHHHHHHHHHHHHHH
Confidence            9999999999999998764

>PRK07049 methionine gamma-lyase; Validated

Probab=100.00  E-value=7.8e-33  Score=245.34  Aligned_cols=259  Identities=31%  Similarity=0.533  Sum_probs=212.8

Q ss_pred             CCCCcceeEeeccCCCCC-CCCCCCCeeeccccccCCCC------------------CCCCCccCCCCChhHHHHHHHHH
Q 024619            5 EEPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSAT------------------ENGPYDYTRSGNPTRDALESLLA   65 (265)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~------------------~~~~~~y~~~g~~~~~~l~~~l~   65 (265)
                      ++.+.++..++.+...+. .|...+|++++.++..+...                  ....+.|++.++|..+.+++.++
T Consensus        14 ~~~~~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~R~~~Pt~~~Le~~lA   93 (427)
T PRK07049         14 RELHPETQMLNYGYDPELSEGAVKPPVFLTSTFVFRSAEDGRDFFDYVSGRKEPPAGEGAGLVYSRFNHPNSEIVEDRLA   93 (427)
T ss_pred             CcCCcccceeeCCCCCCCCCCCccCCccCccceecCChHHHHhhhhccccccccccccccCccccCCCCcCHHHHHHHHH
Confidence            445556778887732232 68899999999998654421                  01237789999999999999999


Q ss_pred             hHhCCCceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeec-CCCHHHHHhhcC-----C
Q 024619           66 KLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN-TCDLDEVASAIG-----P  138 (265)
Q Consensus        66 ~~~g~~~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~d~~~l~~~~~-----~  138 (265)
                      ++.|.++++++++|++|+. ++.+++++||+|++++|.|+.+...+...++..|++++.++ ..|.+++++++.     +
T Consensus        94 ~leg~~~~iv~~sG~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi~~v~~~~~~d~~~l~~~l~~~~~~~  173 (427)
T PRK07049         94 VYEGAESAALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRNFGVGAVGFADGLSEAAIGAAAEAAAAKG  173 (427)
T ss_pred             HHhCCCcEEEEccHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHhcCcEEEEEeCCCCHHHHHHHHHhhccCC
Confidence            9999999999999999986 67789999999999999999998665555677899866554 457777776653     5


Q ss_pred             CceEEEEecCCCCccccccHHHHHHHHHH------cCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeE
Q 024619          139 WTKLVWVESPTNPRQQICDIRKIAEMAHA------HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGV  212 (265)
Q Consensus       139 ~~~~i~~~~~~np~G~~~~l~~i~~~a~~------~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~  212 (265)
                      ++++|++++|+||||.+.|+++|.+++++      +++++++|++|..+....+...+.|+++.|+||+++|++|+|+|+
T Consensus       174 ~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~~pl~~g~divv~S~SK~~gG~~glr~G~  253 (427)
T PRK07049        174 RVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVFQKPLEHGADLSVYSLTKYVGGHSDLVAGA  253 (427)
T ss_pred             CceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCccccccCCccccCCCEEEEcCceeecCCCCcEEEE
Confidence            79999999999999999999999999988      899999999988766666777789999999999998889999999


Q ss_pred             EEeechhHHHHHHHHHHhccCCCChhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619          213 LAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       213 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l  264 (265)
                      ++.+++ +.+.+...+...+..+++..++.+++.|+++..|++++.+|+..+
T Consensus       254 vv~~~~-l~~~l~~~~~~~g~~ls~~~a~l~~r~L~tl~~R~~~~~~~a~~l  304 (427)
T PRK07049        254 VLGRKA-LIRQVRALRSAIGTQLDPHSCWMLGRSLETLVLRMERANRNARAV  304 (427)
T ss_pred             EECCHH-HHHHHHHHHHhcCCCCCHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence            987654 556566677777888999999999999999999999888887654

>PRK06460 hypothetical protein; Provisional

Probab=100.00  E-value=1e-32  Score=241.33  Aligned_cols=251  Identities=32%  Similarity=0.553  Sum_probs=208.6

Q ss_pred             cceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHH
Q 024619            9 VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVT   87 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~   87 (265)
                      .++..++.+ ..+..|...+|++++.++..+..   ..+.|++.++|..+++++.++++.|.+..+++++|++|+. ++.
T Consensus         3 ~~t~~~~~~-~~~~~~~~~~pi~~~~~~~~~~~---~~~~y~r~~~p~~~~L~~~lA~l~g~~~~v~~~sG~~ai~~~l~   78 (376)
T PRK06460          3 DATRTVRED-IDEATGAITTPIYQTTAYHYPEG---EKYRYSREANPTVLELTKKIVELENAEMGVAFSSGMGAISTTAL   78 (376)
T ss_pred             cceeeeecC-CCCCCCCccCCccCCcceeeCCC---CCcceeCCCCccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHH
Confidence            456677776 34456888999999999866542   3688999999999999999999999998999999999886 677


Q ss_pred             HhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHH
Q 024619           88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA  167 (265)
Q Consensus        88 ~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~  167 (265)
                      .++++||+|++..+.|++....+...++..|+++..++..+.+.+++.+.+++++|++++|+||||.+.|+++|+++|++
T Consensus        79 al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~v~~~~~~~~~~l~~~~~~~tklV~l~sp~NPtG~v~d~~~I~~la~~  158 (376)
T PRK06460         79 ALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDASNPGSDNIIEKAKSKRYDVVFVENITNPLLRVVDITELSKVCKE  158 (376)
T ss_pred             HHhCCCCEEEEecCCcCcHHHHHHHHHHhhCcEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCCcccCHHHHHHHHHH
Confidence            88999999999998887666565567788899999998877666666667789999999999999999999999999999


Q ss_pred             cCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhcc
Q 024619          168 HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV  247 (265)
Q Consensus       168 ~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  247 (265)
                      +|+++++|++|+.+....+...+.|+++.|+||+++|+++.++|+++.+++ +.+.+...+...+..+++..++.+++.+
T Consensus       159 ~g~~vivDea~~~~~~~~~l~~~~divv~S~sK~l~G~~~~~~G~~~~~~~-l~~~l~~~~~~~g~~~~~~~a~~~l~~~  237 (376)
T PRK06460        159 NGSILIVDATFSTPINQKPLELGADIVVHSASKFLAGHNDVIAGLAAGYGK-LLNVIDQMRRTLGTSLDPHAAYLTLRGI  237 (376)
T ss_pred             cCCEEEEECCcCccccCChhhcCCCEEEeecceeccCCCCceEEEEecCHH-HHHHHHHHHHhcCCCCCHHHHHHHHhch
Confidence            999999999998775545556678999999999998877788999987654 5555555666667778888899999999


Q ss_pred             CchHhhHHHHhhchhcc
Q 024619          248 KTMALRVEKQQVCFFDL  264 (265)
Q Consensus       248 ~~~~~~~~~~~~~~~~l  264 (265)
                      +.+..++++..+|...+
T Consensus       238 ~~l~~r~~~~~~n~~~l  254 (376)
T PRK06460        238 KTLKIRMDVINRNAEQI  254 (376)
T ss_pred             hhHHHHHHHHHHHHHHH
Confidence            99888888888877654

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=1e-32  Score=244.32  Aligned_cols=261  Identities=35%  Similarity=0.509  Sum_probs=217.1

Q ss_pred             CCCCCcceeEeeccCC-CCCCCCCCCCeeeccccccCCCC--------CCCCCccCCCCChhHHHHHHHHHhHhCCCceE
Q 024619            4 EEEPGVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRAL   74 (265)
Q Consensus         4 ~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i   74 (265)
                      .++...++..++-+.. .+..|...||++++.++..+...        ....+.|++.++|..+.+++.++++.|.+..+
T Consensus         9 ~~~~~~~t~~~~~~~~~~~~~~~~~~Pi~~sstf~~~~~~~~~~~~~~~~~~~~Y~r~~~pt~~~le~~la~l~g~~~~v   88 (437)
T PRK05613          9 ADQWGFETRSIHAGQSVDSDTSARNLPIYQTTSYVFDSAEHAKQRFALEDLGPIYSRLTNPTVEALENRIASLEGGVHAV   88 (437)
T ss_pred             cccCCcchHheeCCCCCCCCCCCccCCEeCCCCcccCCHHHHHHhhccccCCceeeCccChHHHHHHHHHHHHhCCCeEE
Confidence            3444555667777732 33468999999999998655421        23357899999999999999999999999999


Q ss_pred             EecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeec-CCCHHHHHhhcCCCceEEEEecCCCCc
Q 024619           75 CFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN-TCDLDEVASAIGPWTKLVWVESPTNPR  152 (265)
Q Consensus        75 ~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~d~~~l~~~~~~~~~~i~~~~~~np~  152 (265)
                      +++||++|+. ++..++++||+|+++...|.+....+...++..|+++.+++ ..|++++++++++++++|+++++.||+
T Consensus        89 ~fsSG~~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~~d~e~l~~~l~~~tk~V~~e~~~Np~  168 (437)
T PRK05613         89 AFASGQAAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVENPDDPESWQAAVQPNTKAFFGETFANPQ  168 (437)
T ss_pred             EeCCHHHHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHHhcCeEEEEECCCCCHHHHHHhCCccCeEEEEECCCCCC
Confidence            9999998885 67778899999999999999986666566788999999997 558999999999999999999999999


Q ss_pred             cccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechh-------------
Q 024619          153 QQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER-------------  219 (265)
Q Consensus       153 G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~-------------  219 (265)
                      |.+.|+++|.++|+++|+++++|.+++.+....+...+.|+++.|++|+++|++...+|+++.+...             
T Consensus       169 ~~v~di~~I~~la~~~gi~livD~t~a~g~~~~p~~~GaDivv~S~~K~l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~  248 (437)
T PRK05613        169 ADVLDIPAVAEVAHRNQVPLIVDNTIATAALVRPLELGADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFP  248 (437)
T ss_pred             CcccCHHHHHHHHHHcCCeEEEECCCccccccChHHhCCCEEEeeccceecCCCcceeEEEEecCcccccccccccccCC
Confidence            9999999999999999999999999998887778888999999999999987766678888753220             


Q ss_pred             ----------------------HHHHHHHHHHhccCCCChhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619          220 ----------------------LAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       220 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l  264 (265)
                                            +.+.........|..++|.++|+++++|+++..|++++.+|+.++
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~TL~lR~~~~~~nA~~l  315 (437)
T PRK05613        249 YFVTPDPAYHGLKYADLGAPAFGLKARAGLLRDTGATLSPFNAWVTAQGLDTLSLRLERHNENAIKV  315 (437)
T ss_pred             CCCCCccccccccccccchHHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcHHHHHHHHHHHHHHH
Confidence                                  011122345567899999999999999999999999999999875

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=100.00  E-value=2.4e-32  Score=239.56  Aligned_cols=251  Identities=39%  Similarity=0.623  Sum_probs=209.8

Q ss_pred             EeeccCCCCCCCCCCCCeeeccccccCCC--------CCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH
Q 024619           13 LMNFSNEFDPYGALSTPLYQTATFKQPSA--------TENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA   84 (265)
Q Consensus        13 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--------~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~   84 (265)
                      .++.+...+..+...+|++++.++.....        .....+.|++.++|..+++++.+++++|.++++++++|++|+.
T Consensus         4 ~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~la~l~g~~~~~~~~sG~~Ai~   83 (380)
T TIGR01325         4 AIRGGKERTEFREHAEALFLTSSFVYDSAAHAADRFAGEIPGFVYSRYANPTVAAFEERIAALEGAERAVATATGMSAIQ   83 (380)
T ss_pred             eEECCCCCCCCCCccCCeeCCcceecCCHHHHHHhhccccCCcceecCCCchHHHHHHHHHHHhCCCcEEEECCHHHHHH
Confidence            45544223446777788999888754431        1234577898899999999999999999999999999999986


Q ss_pred             -HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHH
Q 024619           85 -AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAE  163 (265)
Q Consensus        85 -~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~  163 (265)
                       ++..++++||+|+++.+.|++....+...++..|+++.+++.+|++++++++.+++++|++++|+||+|.+.|+++|.+
T Consensus        84 ~al~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~le~p~np~g~~~dl~~I~~  163 (380)
T TIGR01325        84 AALMTLLQAGDHVVASRSLFGSTVGFISEILPRFGIEVSFVDPTDLNAWEAAVKPNTKLVFVETPSNPLGELVDIAALAE  163 (380)
T ss_pred             HHHHHHhCCCCEEEEecCCcchHHHHHHHHHHHhCCEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCCeeeCHHHHHH
Confidence             6677899999999999999887766666778899999999999999999999889999999999999999999999999


Q ss_pred             HHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHH
Q 024619          164 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC  243 (265)
Q Consensus       164 ~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (265)
                      +|+++|+++++|++|+.+....+...+.|+++.|++|+++|++...+|+++.+++. .+.+.......+..+++..++.+
T Consensus       164 la~~~gi~livD~a~~~~~~~~pl~~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~-~~~l~~~~~~~g~~~~p~~a~~~  242 (380)
T TIGR01325       164 LAHAIGALLVVDNVFATPVLQQPLKLGADVVVYSATKHIDGQGRVMGGVIAGSEEL-MAEVAVYLRHTGPAMSPFNAWVL  242 (380)
T ss_pred             HHHHcCCEEEEECCCcccccCCchhhCCCEEEeeccceecCCCCeEEEEEEeCHHH-HHHHHHHHHhhCCCCCHHHHHHH
Confidence            99999999999999988776667778899999999999977655567888877654 44455555566778889999999


Q ss_pred             HhccCchHhhHHHHhhchhcc
Q 024619          244 LRGVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       244 ~~~l~~~~~~~~~~~~~~~~l  264 (265)
                      +++++.+..|++++.+++..+
T Consensus       243 l~~l~tl~~r~~~~~~~a~~l  263 (380)
T TIGR01325       243 LKGLETLSLRMQKQFDSALAI  263 (380)
T ss_pred             HhccCcHHHHHHHHHHHHHHH
Confidence            999999999999998887754

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>PLN02242 methionine gamma-lyase

Probab=100.00  E-value=1e-32  Score=243.77  Aligned_cols=255  Identities=30%  Similarity=0.476  Sum_probs=207.2

Q ss_pred             CcceeEeeccCCCCCCCCCCCCeeeccccccCCCC-------CC-----CCCccCCCCChhHHHHHHHHHhHhCCCceEE
Q 024619            8 GVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSAT-------EN-----GPYDYTRSGNPTRDALESLLAKLDKADRALC   75 (265)
Q Consensus         8 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-------~~-----~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~   75 (265)
                      .+....++.+...+..+...||++++.++..+...       ..     ..+.|+|.++|..+++++.+++++|.+.+++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~Y~r~~~Pt~~~LE~~lA~l~g~~~~l~   96 (418)
T PLN02242         17 DPAAALASARHEFGEHGGVNMSIEASATFTVMEPDTMRRMFSGELGPDRDFYIYSRHFNPTVLNLGRQMAALEGTEAAYC   96 (418)
T ss_pred             ChHHHHhcCCCCCCCCCCccCCcccCCceecCCHHHHHHHhcccccccCCCccccCCCChhHHHHHHHHHHHhCCCeEEE
Confidence            34456777774445457779999999998655421       11     2377999999999999999999999999999


Q ss_pred             ecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhh-cCCCCeEEEeecCCCHHHHHhhcCC-CceEEEEecCCCCc
Q 024619           76 FTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRV-TPKTGVVVKRVNTCDLDEVASAIGP-WTKLVWVESPTNPR  152 (265)
Q Consensus        76 ~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~d~~~l~~~~~~-~~~~i~~~~~~np~  152 (265)
                      +++|++|+. ++.+++++||+|+++.|.|+.+...+... .+..|+++++++..|++++++++.+ ++++|++++|+|||
T Consensus        97 ~~sG~~Ai~~al~al~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~~d~~d~e~l~~~i~~~~tklV~lesp~NPt  176 (418)
T PLN02242         97 TASGMSAISSVLLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCNITTTFVDITDLEAVKKAVVPGKTKVLYFESISNPT  176 (418)
T ss_pred             EccHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHhhhhccCceEEEcCCCCHHHHHHhcCcCCCEEEEEecCCCCC
Confidence            999999986 77888999999999999998886554333 3458999999999999999999987 59999999999999


Q ss_pred             cccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHH----
Q 024619          153 QQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ----  228 (265)
Q Consensus       153 G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~----  228 (265)
                      |.+.|+++|+++|+++|+++|+|++|+... ..+...+.|+++.|+||++++++..++|+++.+++.+.. +...+    
T Consensus       177 G~v~dl~~I~~la~~~gi~livDea~~~~~-~~~~~~g~divv~S~SK~l~g~g~~~gG~iv~~~~li~~-l~~~~~~~~  254 (418)
T PLN02242        177 LTVADIPELARIAHEKGVTVVVDNTFAPMV-LSPARLGADVVVHSISKFISGGADIIAGAVCGPAELVNS-MMDLHHGAL  254 (418)
T ss_pred             CcccCHHHHHHHHHHhCCEEEEECCCCccC-CCHHHcCCcEEEEeCccccCCCCCceEEEEEcCHHHHHH-HHHHhhhhh
Confidence            999999999999999999999999997544 345666899999999999977665668999877655443 33332    


Q ss_pred             HhccCCCChhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619          229 NAEGSGLAPFDCWICLRGVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l  264 (265)
                      ...+..+++..++++.+.++.+..+++++.+|+..+
T Consensus       255 ~~~g~~~~~~~A~l~~~~l~tl~~r~~~~~~~a~~l  290 (418)
T PLN02242        255 MLLGPTMNPKVAFELSERLPHLSLRMKEHCRRAMEY  290 (418)
T ss_pred             hccCCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence            235567778889999999999998988888887654

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=100.00  E-value=6.3e-32  Score=239.52  Aligned_cols=254  Identities=37%  Similarity=0.569  Sum_probs=206.0

Q ss_pred             ceeEeeccCC-CCCCCCCCCCeeeccccccCCCC--------CCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchH
Q 024619           10 STLLMNFSNE-FDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGM   80 (265)
Q Consensus        10 ~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~   80 (265)
                      ++..++.+.. ....|...||++++.++......        ....+.|+|.++|..+++++.+++++|.++.+++++|+
T Consensus         3 ~t~~~~~~~~~~~~~~~~~~pi~~~~t~~~~~~~~~~~~~~~~~~~~~ysr~~~p~~~~le~~lA~l~g~~~~v~~~sG~   82 (418)
T TIGR01326         3 ETLQLHAGQEPDPTTGSRAVPIYQTTSYVFDSTEHAAALFGLQEAGNIYSRLMNPTTDVLEQRIAALEGGVAALAVASGQ   82 (418)
T ss_pred             cceeEECCCCCCCCCCCccCCccCCCCeecCCHHHHHHhhccCcCCceeECCCChhHHHHHHHHHHHhCCCeEEEEccHH
Confidence            3556666522 23357889999999987654421        12347799999999999999999999999999999999


Q ss_pred             HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHH
Q 024619           81 AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIR  159 (265)
Q Consensus        81 ~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~  159 (265)
                      +|+. ++..++++||+|+++.+.|++....+...++..|++++.++.+|++++++++.+++++|++++|+||+|.+.|++
T Consensus        83 ~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v~~~d~~~l~~~l~~~t~~V~le~p~NPtg~v~dl~  162 (418)
T TIGR01326        83 AAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLGIEVRFVDPDDPEEFEKAIDENTKAVFAETIGNPAINVPDIE  162 (418)
T ss_pred             HHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCeecCHH
Confidence            9986 677889999999999999988776666777889999999999899999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhH-------------------
Q 024619          160 KIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL-------------------  220 (265)
Q Consensus       160 ~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~-------------------  220 (265)
                      +|.++|+++|+++|+|++|+.+....+...+.|+++.|++|++++ +|.+.|+++.+...+                   
T Consensus       163 ~I~~la~~~~i~livD~t~~~~~~~~~l~~g~Divv~S~sK~l~g-~G~~lGg~v~~~~~~~~~~~~~~~~~~~~~~q~a  241 (418)
T TIGR01326       163 AIAEVAHAHGVPLIVDNTFATPYLCRPIDHGADIVVHSATKYIGG-HGTAIGGVIVDGGKFDWANGRFPLFTTPDPSYHG  241 (418)
T ss_pred             HHHHHHHHcCCEEEEECCCchhhcCCchhcCCeEEEECccccccC-CccceEEEEEecccccccccccccccCCCCcccc
Confidence            999999999999999999998766667777899999999999965 455666665643211                   


Q ss_pred             -------------HHHHHHHHHhccCCCChhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619          221 -------------AKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       221 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l  264 (265)
                                   .+.........+..++|..+|.+.++++++..|++++..|+..+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~~~~~~l~tl~~R~~~~~~~a~~l  298 (418)
T TIGR01326       242 LVFTETFGNPAFIVKARVQLLRDLGAALSPFNAFLLLQGLETLSLRMERHVENALKV  298 (418)
T ss_pred             chhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHHCCcccHHHHHHHHHHHHHHH
Confidence                         01111123345677789999999999999999999988877643

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=100.00  E-value=2.9e-32  Score=226.27  Aligned_cols=260  Identities=37%  Similarity=0.562  Sum_probs=229.4

Q ss_pred             CCCCcceeEeeccCCCCCCCCCCCCeeeccccccCCCC--------CCCCCccCCCCChhHHHHHHHHHhHhCCCceEEe
Q 024619            5 EEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCF   76 (265)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~   76 (265)
                      ...+.++..++-+..-.-.|....|+++..++..+...        ...++-|+|.++|..+.++++++.+.|.-..+.+
T Consensus         4 ~~~~f~T~~vHag~~d~~t~ara~PIyqtTsy~F~d~~haa~lF~l~~~G~iYsRi~NPT~~vlE~RiAaLEGG~aa~a~   83 (426)
T COG2873           4 ANWGFETLAVHAGQEDPTTGARAVPIYQTTSYVFDDTDHAAALFGLKEPGNIYTRIMNPTTDVLEERIAALEGGVAALAV   83 (426)
T ss_pred             cccCcchhhhcCCCCCCCCCceecceeeeeeeecCCHHHHHHHhCCCcCCceeeeccCchHHHHHHHHHHhhcchhhhhh
Confidence            34567788888885533388899999999998765532        4568899999999999999999999999899999


Q ss_pred             cchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCcccc
Q 024619           77 TSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQI  155 (265)
Q Consensus        77 ~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~  155 (265)
                      .||++|+. +++.+.++||.|+-+..-|.+....+...+++.|+++.+++.+|+|.++++++++||+|+++...||.+.+
T Consensus        84 aSG~AA~~~ai~~la~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~fvd~~d~~~~~~aI~~nTkavf~EtigNP~~~v  163 (426)
T COG2873          84 ASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFVDPDDPENFEAAIDENTKAVFAETIGNPGLDV  163 (426)
T ss_pred             ccchHHHHHHHHHhccCCCeeEeeccccCchHHHHHHHHHhcCcEEEEeCCCCHHHHHHHhCcccceEEEEeccCCCccc
Confidence            99999985 89999999999999999999999999888899999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHH-------------
Q 024619          156 CDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-------------  222 (265)
Q Consensus       156 ~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~-------------  222 (265)
                      .|+++|.++|+++|+++|+|.+.+.+.+..|.+.|.||++.|++||++|.+..++|+++-.....+.             
T Consensus       164 ~Die~ia~iAh~~gvpliVDNT~atpyl~rP~~hGADIVvHS~TK~igGhGt~iGG~iVD~G~FDw~~~~rfP~~~~p~p  243 (426)
T COG2873         164 LDIEAIAEIAHRHGVPLIVDNTFATPYLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTPDP  243 (426)
T ss_pred             cCHHHHHHHHHHcCCcEEEecCCCcceecchhhcCCCEEEEeecccccCCccccceEEEeCCccccccCCCCcccCCCCc
Confidence            9999999999999999999999999988899999999999999999999999999998765432221             


Q ss_pred             -------------------HHHHHHHhccCCCChhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619          223 -------------------ELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       223 -------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l  264 (265)
                                         .......-.+..++|+.+|+.+.+++++.+|++++.+|++.+
T Consensus       244 ~YhGl~~~~~~g~~af~~~~r~~~lRDlGa~lsPfnAfl~lqGlETL~LRmerH~~NA~~v  304 (426)
T COG2873         244 SYHGLVYTETFGNAAFIIKARVQLLRDLGATLSPFNAFLLLQGLETLSLRMERHCENALKV  304 (426)
T ss_pred             cccceehhhhcccHHHHHHHHHHHHHhcccccCcHHHHHHHhchhhhHHHHHHHHHhHHHH
Confidence                               111222456789999999999999999999999999999875

>PRK05968 hypothetical protein; Provisional

Probab=100.00  E-value=1.3e-31  Score=235.46  Aligned_cols=251  Identities=37%  Similarity=0.601  Sum_probs=210.3

Q ss_pred             EeeccCCCCCCCCCCCCeeeccccccCCCC--------CCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH
Q 024619           13 LMNFSNEFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA   84 (265)
Q Consensus        13 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~   84 (265)
                      +++-.-..+..++..||++++.++..+...        ....+.|++.++|..+++++.+++++|.+..+++++|+.|+.
T Consensus        13 ~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~Y~r~~~p~~~~le~~lA~l~g~~~av~~~sG~~Ai~   92 (389)
T PRK05968         13 LITAHDEGNAFDAVVPPIFQTSLFTFDSYDEMEDVYAGEKVRPIYSRGDNPTVRAFEEMLAKLEGAEDARGFASGMAAIS   92 (389)
T ss_pred             eeecCCCccCCCCccCCccCCcceecCCHHHHHHhhcCCCCCccccCCCChhHHHHHHHHHHHhCCCcEEEECCHHHHHH
Confidence            344432334468889999999998665421        223577999999999999999999999999999999998886


Q ss_pred             -HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHH
Q 024619           85 -AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAE  163 (265)
Q Consensus        85 -~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~  163 (265)
                       ++..++++||+|+++.+.|++....+...++..|+++++++..|++++++++ +++++|++++|+|+++.+.|+++|.+
T Consensus        93 ~al~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i-~~tklV~ie~pt~~~~~~~dl~~i~~  171 (389)
T PRK05968         93 STVLSFVEPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDGRDEEAVAKAL-PGAKLLYLESPTSWVFELQDVAALAA  171 (389)
T ss_pred             HHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCceEEEeCCCCHHHHHHhc-ccCCEEEEECCCCCCCcHHHHHHHHH
Confidence             6777899999999999999988777766778889999999999999999988 67899999999999999999999999


Q ss_pred             HHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHH
Q 024619          164 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC  243 (265)
Q Consensus       164 ~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (265)
                      +|+++|+++++|++|+.+....+...+.|+++.|++|+++|+++.++|+++.+++.+...........+..+++..++.+
T Consensus       172 la~~~gi~vivD~a~a~~~~~~p~~~g~Divv~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~~~~~g~~~~~~~A~~~  251 (389)
T PRK05968        172 LAKRHGVVTMIDNSWASPVFQRPITLGVDLVIHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYPYLGAKLSPFEAWLL  251 (389)
T ss_pred             HHHHcCCEEEEECCCcchhccCchhcCCcEEEeeccccccCCCCeEEEEEEECHHHHHHHHHHHHHhCCCCCChHHHHHH
Confidence            99999999999999998876667777899999999999988888789999876654433332222345677899999999


Q ss_pred             HhccCchHhhHHHHhhchhcc
Q 024619          244 LRGVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       244 ~~~l~~~~~~~~~~~~~~~~l  264 (265)
                      +++|+++..|++++.+++..+
T Consensus       252 l~~L~tl~~r~~~~~~~a~~l  272 (389)
T PRK05968        252 LRGLRTLPLRMKAHEASALEI  272 (389)
T ss_pred             HcccCcHHHHHHHHHHHHHHH
Confidence            999999999999999987654

>PRK06434 cystathionine gamma-lyase; Validated

Probab=100.00  E-value=9.4e-31  Score=228.23  Aligned_cols=253  Identities=36%  Similarity=0.603  Sum_probs=213.4

Q ss_pred             CcceeEeeccCC-CCCCCCCCCCeeeccccccCCCC--------CCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecc
Q 024619            8 GVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTS   78 (265)
Q Consensus         8 ~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~   78 (265)
                      +.++..++.+.. .+..|...+|++.+.++......        ....+.|++.|+|..+++++.++++.|.+.+++++|
T Consensus         8 ~~~t~~~~~~~~~~~~~~~~~~pI~~ss~~~~~~~~~~~~~~~~~~~~~~Y~r~~~P~~~~lE~~la~leg~~~av~~sS   87 (384)
T PRK06434          8 GFNTRAVQSGELRDPRFGNVTTPIFETSTFVYPNSEKEAYMDSTRGMPYIYTRWGNPTVQAFEEKYAVLENAEHALSFSS   87 (384)
T ss_pred             CcccceeECCCCCCCCCCCccCCeeCCcceecCChHHhhhccccccCCcceeCCCChhHHHHHHHHHHHhCCCcEEEeCC
Confidence            344566776622 23468889999999987654421        123578999999999999999999999999999999


Q ss_pred             hHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcC-CCceEEEEecCCCCccccc
Q 024619           79 GMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG-PWTKLVWVESPTNPRQQIC  156 (265)
Q Consensus        79 g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~-~~~~~i~~~~~~np~G~~~  156 (265)
                      |+.|+. ++++++++||+|+++.+.|......+...+...|+++++++.++.+.+.  +. +++++|+++++.||++.+.
T Consensus        88 G~aAi~~al~all~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~fvd~~~~~~~~--l~~~~tklv~~e~~snpt~~v~  165 (384)
T PRK06434         88 GMGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLKTLGIHVDYIDTDRLNSLD--FDPSNYDLIYAESITNPTLKVP  165 (384)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHHhcCcEEEEECCCChhhee--ecCCCeeEEEEEcCCCCCceee
Confidence            999996 7778899999999998888888777667778899999999988766655  44 4799999999999999999


Q ss_pred             cHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCC
Q 024619          157 DIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA  236 (265)
Q Consensus       157 ~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~  236 (265)
                      |+++|+++|++++  +++|.+++.+....+...+.|++++|.+|+++|+++..+|+++.+++.+.+.........+..++
T Consensus       166 Di~~I~~la~~~~--lvVD~t~~s~~~~~pl~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~  243 (384)
T PRK06434        166 DIKNVSSFCHEND--VIVDATFASPYNQNPLDLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGSNPD  243 (384)
T ss_pred             cHHHHHHHHHHcC--eEEECCCCCcccCCchhcCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHHhcCCCCC
Confidence            9999999999998  46699998888888889999999999999999888788999988777776666655556788889


Q ss_pred             hhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619          237 PFDCWICLRGVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l  264 (265)
                      +.++|+++++|+++..|++++++|+..+
T Consensus       244 ~~~A~l~~~gL~tL~~R~~r~~~~a~~~  271 (384)
T PRK06434        244 PIQAYLALRGLKTLGLRMEKHNKNGMEL  271 (384)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998764

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.97  E-value=4e-29  Score=219.14  Aligned_cols=228  Identities=23%  Similarity=0.272  Sum_probs=171.1

Q ss_pred             eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCCC----ceEEecch-HHHH
Q 024619           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKAD----RALCFTSG-MAAL   83 (265)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~~----~~i~~~~g-~~al   83 (265)
                      ..+|+++ ..+..-..|+++.++......    .+...|++. |.+ +|+++.+++.+.+|.+    +.+++|+| ++|+
T Consensus        28 ~~vi~l~-iG~Pd~~~p~~i~~a~~~a~~----~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al  102 (393)
T COG0436          28 EDVIDLS-IGEPDFPTPEHIIEAAIEALE----EGGTHYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEAL  102 (393)
T ss_pred             CCEEEeC-CCCCCCCCCHHHHHHHHHHHh----cccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHH
Confidence            4589998 444433334444444321111    122156566 997 4999999999998733    43666655 4998


Q ss_pred             H-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC--------CHHHHHhhcCCCceEEEEecCCCCccc
Q 024619           84 A-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--------DLDEVASAIGPWTKLVWVESPTNPRQQ  154 (265)
Q Consensus        84 ~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--------d~~~l~~~~~~~~~~i~~~~~~np~G~  154 (265)
                      . ++++++++||+|++++|.|+.|.    ...+..|.+++.+++.        |++++++++.+++|+|++++||||||.
T Consensus       103 ~~~~~a~~~pGDeVlip~P~Y~~y~----~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~ktk~i~ln~P~NPTGa  178 (393)
T COG0436         103 FLAFLALLNPGDEVLIPDPGYPSYE----AAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITPKTKAIILNSPNNPTGA  178 (393)
T ss_pred             HHHHHHhcCCCCEEEEeCCCCcCHH----HHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCccceEEEEeCCCCCcCc
Confidence            6 88899999999999999999997    6668889999998842        699999999999999999999999999


Q ss_pred             ccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc-----CCC----CCCccEEEeccccccccCCCceeeEEEeechhHHH
Q 024619          155 ICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK  222 (265)
Q Consensus       155 ~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~~----~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~  222 (265)
                      +++   +++|+++|++||++||.||+|..-.+.     +..    ..+..|.+.||||.+ +.+|+|+||++++++.+.+
T Consensus       179 v~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~-~mtGwRvG~~v~~~~~l~~  257 (393)
T COG0436         179 VYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTY-GMTGWRIGWVVGPPEELIA  257 (393)
T ss_pred             CCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccc-cccccceeEeecChHHHHH
Confidence            965   799999999999999999999744432     111    124679999999999 7899999999998666666


Q ss_pred             HHHHHHHhccCCCChhHHHHHHhccC
Q 024619          223 ELYFLQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      ....++.....+.+...+..+...|+
T Consensus       258 ~~~~~~~~~~~~~~~~~Q~aa~~aL~  283 (393)
T COG0436         258 ALRKLKSYLTSCAPTPAQYAAIAALN  283 (393)
T ss_pred             HHHHHHHhcccCCCHHHHHHHHHHhc
Confidence            66666666665666555555444444

>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]

Probab=99.96  E-value=2.5e-29  Score=212.03  Aligned_cols=203  Identities=25%  Similarity=0.309  Sum_probs=162.8

Q ss_pred             CCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCC----CceEEecchH-HHHH-HHHHhcCCCC
Q 024619           23 YGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGM-AALA-AVTHLLGTGE   94 (265)
Q Consensus        23 ~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~g~-~al~-~~~~~~~~g~   94 (265)
                      +...++|.+....+.. .+....-++|++. |.| +++.|++.+++++|.    ++.+++|.|+ +++. +++.++++||
T Consensus        40 fp~~~~P~fv~ea~~~-~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~~~GD  118 (420)
T KOG0257|consen   40 FPDFPPPKFVTEAAKN-AAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLLNPGD  118 (420)
T ss_pred             CCCCCCcHHHHHHHHH-HhccchhccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHcCCCC
Confidence            3444566655544332 2223356889999 998 599999999998864    4678888887 9986 9999999999


Q ss_pred             EEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-------------CHHHHHhhcCCCceEEEEecCCCCcccccc---H
Q 024619           95 EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------------DLDEVASAIGPWTKLVWVESPTNPRQQICD---I  158 (265)
Q Consensus        95 ~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l  158 (265)
                      +|++.+|.|++|.    ...+..|.+++.++..             |+++++.++.++|++|++|+||||||.+.+   |
T Consensus       119 eVii~eP~fd~Y~----~~~~maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~kTk~Ii~ntPhNPtGkvfsReeL  194 (420)
T KOG0257|consen  119 EVIVFEPFFDCYI----PQVVMAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKITEKTKAIILNTPHNPTGKVFSREEL  194 (420)
T ss_pred             EEEEecCcchhhh----hHHhhcCCcceeeccccccccccCccccCChHHHHhhccCCccEEEEeCCCCCcCcccCHHHH
Confidence            9999999999997    5668889998888743             899999999999999999999999999964   8


Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCCCC---------cCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHH
Q 024619          159 RKIAEMAHAHGALLLVDNSIMSPVL---------SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN  229 (265)
Q Consensus       159 ~~i~~~a~~~~~~li~D~~~~~~~~---------~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~  229 (265)
                      ++|+++|++||+++|.||+|..-.+         ..|.-+++.+.++|++|+| |..|+|.||+++ ++.+......++.
T Consensus       195 e~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf-~~TGWrlGW~ig-p~~L~~~~~~vh~  272 (420)
T KOG0257|consen  195 ERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTF-GVTGWRLGWAIG-PKHLYSALFPVHQ  272 (420)
T ss_pred             HHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEecccccee-eeeeeeeeeeec-hHHhhhhHHHHhh
Confidence            9999999999999999999863222         2366667899999999999 789999999999 4455555555555


Q ss_pred             hcc
Q 024619          230 AEG  232 (265)
Q Consensus       230 ~~~  232 (265)
                      ...
T Consensus       273 ~~~  275 (420)
T KOG0257|consen  273 NFV  275 (420)
T ss_pred             ccc
Confidence            433

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=99.95  E-value=4.5e-27  Score=202.88  Aligned_cols=241  Identities=23%  Similarity=0.207  Sum_probs=183.8

Q ss_pred             ceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC--CC-hhHHHHHHHHHhHhCCCceEEecchHHHH-HH
Q 024619           10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS--GN-PTRDALESLLAKLDKADRALCFTSGMAAL-AA   85 (265)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~--g~-~~~~~l~~~l~~~~g~~~~i~~~~g~~al-~~   85 (265)
                      ..++++|+ +|||+|+..+|.+..+.....+.. ..+..-+|.  |+ +...+||+.+++++|.+..++++||..|. .+
T Consensus        38 ~~~~~nf~-SNdYLGLa~~~~~~~a~~~~~~~~-g~g~~gsR~i~G~~~~h~~LE~~lA~f~g~e~al~f~SGy~AN~~~  115 (388)
T COG0156          38 GRKVLNFC-SNDYLGLASHPELIEAAKAAIRRY-GVGAGGSRLISGTSDLHVELEEELADFLGAEAALLFSSGFVANLGL  115 (388)
T ss_pred             CceeEeee-ccCcccccCCHHHHHHHHHHHHHh-CCCCCCcCcccCCcHHHHHHHHHHHHHhCCCcEEEEcccchhHHHH
Confidence            36799999 999999999999777653332211 223334553  66 57999999999999999999999999776 68


Q ss_pred             HHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCC------CceEEEEecCCCCccccccHH
Q 024619           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP------WTKLVWVESPTNPRQQICDIR  159 (265)
Q Consensus        86 ~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~------~~~~i~~~~~~np~G~~~~l~  159 (265)
                      +.++++++|.|+.+...|.+..    +-++..+.+++...+.|++++++.+.+      +.++|++++..++.|.+.||+
T Consensus       116 i~~l~~~~dli~~D~lnHASii----dG~rls~a~~~~f~HnD~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiApL~  191 (388)
T COG0156         116 LSALLKKGDLIFSDELNHASII----DGIRLSRAEVRRFKHNDLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAPLP  191 (388)
T ss_pred             HHHhcCCCcEEEEechhhhhHH----HHHHhCCCcEEEecCCCHHHHHHHHHhhhccCCCceEEEEeccccCCCCcCCHH
Confidence            8899999999999999998876    555678889999999999999998864      357899999999999999999


Q ss_pred             HHHHHHHHcCCEEEEeCCcCCCCCcCC---------C-CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHH--
Q 024619          160 KIAEMAHAHGALLLVDNSIMSPVLSRP---------L-ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL--  227 (265)
Q Consensus       160 ~i~~~a~~~~~~li~D~~~~~~~~~~~---------~-~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~--  227 (265)
                      +|++++++|++++++||+|+.|.++..         . ..+.||+++|++|.+++.    +|++.++...+ +.+...  
T Consensus       192 ~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs~----Gg~v~g~~~~~-d~L~~~ar  266 (388)
T COG0156         192 ELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGSS----GGYIAGSAALI-DYLRNRAR  266 (388)
T ss_pred             HHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhccc----CceeeCcHHHH-HHHHHhCC
Confidence            999999999999999999999988621         1 134589999999999643    58887766544 423222  


Q ss_pred             HHhccCCCChhHHHHHHhccC---chHhhHHHHhhch
Q 024619          228 QNAEGSGLAPFDCWICLRGVK---TMALRVEKQQVCF  261 (265)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~  261 (265)
                      .......++|..+......++   +...+..+++++.
T Consensus       267 ~~ifStalpP~~aaa~~~al~~l~~~~~~r~~L~~~~  303 (388)
T COG0156         267 PFIFSTALPPAVAAAALAALRILEEGPERRERLQELA  303 (388)
T ss_pred             ceeccCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            224556777776555444444   3345555555544

>PRK06207 aspartate aminotransferase; Provisional

Probab=99.95  E-value=6.6e-26  Score=200.81  Aligned_cols=187  Identities=22%  Similarity=0.236  Sum_probs=143.7

Q ss_pred             CCccCCC-CCh-hHHHHHHHHHhHhCCC----ceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCC
Q 024619           46 PYDYTRS-GNP-TRDALESLLAKLDKAD----RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (265)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~~----~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~  117 (265)
                      ...|++. |.+ +++++++++++++|.+    +.+++++|+ +++. ++..++++||+|++++|+|+.+.    ..++..
T Consensus        71 ~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~----~~~~~~  146 (405)
T PRK06207         71 VQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALFLAVAATVARGDKVAIVQPDYFANR----KLVEFF  146 (405)
T ss_pred             CccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhHH----HHHHHc
Confidence            4578876 776 5999999999998742    456666664 8886 67778999999999999999886    555777


Q ss_pred             CeEEEeecCC----------CHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc
Q 024619          118 GVVVKRVNTC----------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS  184 (265)
Q Consensus       118 g~~~~~~~~~----------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~  184 (265)
                      |.+++.++++          |++++++++.+++++|++++|+||||.+.+   +++|+++|+++|++||+||+|+...+.
T Consensus       147 g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~  226 (405)
T PRK06207        147 EGEMVPVQLDYLSADKRAGLDLDQLEEAFKAGVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYD  226 (405)
T ss_pred             CCEEEEEeccccCcccCCCcCHHHHHHhhhhcCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccC
Confidence            8888877653          789999988888999999999999999976   788999999999999999999854321


Q ss_pred             -----CC----CCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChh
Q 024619          185 -----RP----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF  238 (265)
Q Consensus       185 -----~~----~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~  238 (265)
                           ..    ...+..+++.||||.+ +.+|+|+||++.+++.+ +.....+.......+..
T Consensus       227 ~~~~~~~~~~~~~~~~vi~i~SfSK~~-~lpGlRiG~ii~~~~l~-~~~~~~~~~~~~~~~~~  287 (405)
T PRK06207        227 GTSYTHLRALPIDPENVITIMGPSKTE-SLSGYRLGVAFGSPAII-DRMEKLQAIVSLRAAGY  287 (405)
T ss_pred             CCCCCchhcCCCCcCcEEEEecchhhc-cCcccceEEEEcCHHHH-HHHHHHHhHhccCCCHH
Confidence                 11    1234569999999999 66789999998776544 44444444333333433

>PRK07681 aspartate aminotransferase; Provisional

Probab=99.94  E-value=1.5e-25  Score=198.25  Aligned_cols=196  Identities=16%  Similarity=0.190  Sum_probs=147.3

Q ss_pred             CCccCCCCCh-hHHHHHHHHHhHhCC----CceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC
Q 024619           46 PYDYTRSGNP-TRDALESLLAKLDKA----DRALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (265)
Q Consensus        46 ~~~y~~~g~~-~~~~l~~~l~~~~g~----~~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g  118 (265)
                      .+.|+..|.+ +++++++++.+.+|.    ++.+++++|+ +++. ++..++++||.|++++|+|+.+.    ..++..|
T Consensus        63 ~~~y~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~----~~~~~~G  138 (399)
T PRK07681         63 SYGYTLSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVHLPMVYANPGDIILVPDPGYTAYE----TGIQMAG  138 (399)
T ss_pred             cCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHHHHHHHhCCCCCEEEECCCCccchH----HHHHhcC
Confidence            4566655776 589999999887653    2466677775 8886 66778999999999999999997    5557789


Q ss_pred             eEEEeecCC-------CHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc----
Q 024619          119 VVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----  184 (265)
Q Consensus       119 ~~~~~~~~~-------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~----  184 (265)
                      ++++.++++       |++++++++.+++++|++++|+||||.+.+   +++|+++|+++|++||+||+|+...+.    
T Consensus       139 ~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~  218 (399)
T PRK07681        139 ATSYYMPLKKENDFLPDLELIPEEIADKAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKP  218 (399)
T ss_pred             CEEEEEecCCCCCCcCCHHHHHHhccccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCC
Confidence            999988753       678898888788999999999999999977   788999999999999999999744321    


Q ss_pred             -CCC----CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhcc
Q 024619          185 -RPL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV  247 (265)
Q Consensus       185 -~~~----~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  247 (265)
                       ...    ..+.++++.||||.+ |.+|+|+||++.+++.+ +.+...+.......+...+..+...+
T Consensus       219 ~~~~~~~~~~~~~i~~~S~SK~~-~~~GlRiG~~i~~~~l~-~~~~~~~~~~~~~~s~~~q~~~~~~l  284 (399)
T PRK07681        219 ISFLSVPGAKEVGVEINSLSKSY-SLAGSRIGYMIGNEEIV-RALTQFKSNTDYGVFLPIQKAACAAL  284 (399)
T ss_pred             CChhhCCCCcccEEEEeeccccc-CCccceeEEEecCHHHH-HHHHHHHhhcccCCCHHHHHHHHHHH
Confidence             111    124579999999999 77899999998766544 44444444334445544444433333

>PRK05942 aspartate aminotransferase; Provisional

Probab=99.94  E-value=1.4e-25  Score=198.14  Aligned_cols=208  Identities=15%  Similarity=0.208  Sum_probs=150.5

Q ss_pred             eEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCC----CceEEecchH-HHHH
Q 024619           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGM-AALA   84 (265)
Q Consensus        12 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~g~-~al~   84 (265)
                      .+++|+ .++.....++..+.+.....   .....+.|++. |.+ +++++++++.+.+|.    ++.+++++|+ +++.
T Consensus        36 ~~i~l~-~g~p~~~~p~~~~~~~~~~~---~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al~  111 (394)
T PRK05942         36 DLIDLG-MGNPDGAAPQPVIEAAIAAL---ADPQNHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGLT  111 (394)
T ss_pred             CeEEcC-CCCCCCCCCHHHHHHHHHHH---hCCCCccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHHH
Confidence            478998 44444432222333321111   11234678877 876 599999999887663    2346666665 8886


Q ss_pred             -HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-------CHHHHHhhcCCCceEEEEecCCCCccccc
Q 024619           85 -AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQIC  156 (265)
Q Consensus        85 -~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~~~~~~~~i~~~~~~np~G~~~  156 (265)
                       ++..++++||+|++++|+|+.+..    .++..|++++.++.+       |++++++.+.+++++|++++|+||||.+.
T Consensus       112 ~~~~~~~~~gd~Vlv~~P~y~~~~~----~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPtG~~~  187 (394)
T PRK05942        112 HLALAYVNPGDVVLVPSPAYPAHFR----GPLIAGAQIYPIILKPENDWLIDLSSIPEEVAQQAKILYFNYPSNPTTATA  187 (394)
T ss_pred             HHHHHhCCCCCEEEEcCCCCcchHH----HHHHcCCEEEEeecCCccCCccCHHHHHHhccccceEEEEcCCCCCCCCcC
Confidence             667789999999999999999863    335678888888653       68899888888999999999999999998


Q ss_pred             c---HHHHHHHHHHcCCEEEEeCCcCCCCCc-----CC--C--CCCccEEEeccccccccCCCceeeEEEeechhHHHHH
Q 024619          157 D---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RP--L--ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL  224 (265)
Q Consensus       157 ~---l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~--~--~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~  224 (265)
                      +   +++|+++|+++|+++|+||+|+...+.     ..  .  ..+.++++.||||.+ |.+|+|+|+++.+++.+ +.+
T Consensus       188 s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~-~~~GlRiG~i~~~~~l~-~~l  265 (394)
T PRK05942        188 PREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTY-NMAGWRVGFVVGNRHII-QGL  265 (394)
T ss_pred             CHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhcc-CChhhheeeeecCHHHH-HHH
Confidence            6   789999999999999999998743321     11  1  123568899999999 67899999998876544 444


Q ss_pred             HHHHH
Q 024619          225 YFLQN  229 (265)
Q Consensus       225 ~~~~~  229 (265)
                      .....
T Consensus       266 ~~~~~  270 (394)
T PRK05942        266 RTLKT  270 (394)
T ss_pred             HHHHh
Confidence            44443

>PRK07324 transaminase; Validated

Probab=99.94  E-value=8.3e-26  Score=198.13  Aligned_cols=196  Identities=20%  Similarity=0.230  Sum_probs=141.7

Q ss_pred             CCCccCCC-CChh-HHHHHHHHHhHhCCCceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEE
Q 024619           45 GPYDYTRS-GNPT-RDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVV  121 (265)
Q Consensus        45 ~~~~y~~~-g~~~-~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~  121 (265)
                      ....|++. |.+. ++++++++.. ...+++++++++++++. ++..++++||+|+++.|+|+.+.    ..++..|.++
T Consensus        54 ~~~~Y~~~~G~~~lr~~ia~~~~~-~~~~~vi~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~----~~~~~~g~~v  128 (373)
T PRK07324         54 KKLTYGWIEGSPEFKEAVASLYQN-VKPENILQTNGATGANFLVLYALVEPGDHVISVYPTYQQLY----DIPESLGAEV  128 (373)
T ss_pred             CCccCCCCCCCHHHHHHHHHHhcC-CChhhEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHH----HHHHHcCCEE
Confidence            45678877 7763 5555554432 12334544444458886 77788999999999999998886    5557788899


Q ss_pred             EeecCC-------CHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc----CCC
Q 024619          122 KRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----RPL  187 (265)
Q Consensus       122 ~~~~~~-------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~----~~~  187 (265)
                      +.++++       |++++++.+.+++++|++++|+||||.+.+   +++|+++|++||+++|+||+|+.-...    ...
T Consensus       129 ~~v~~~~~~~~~~d~~~l~~~~~~~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~~  208 (373)
T PRK07324        129 DYWQLKEENGWLPDLDELRRLVRPNTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSIA  208 (373)
T ss_pred             EEEecccccCCCCCHHHHHHhCCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCChh
Confidence            888752       789999888889999999999999999987   899999999999999999999743322    111


Q ss_pred             -CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhcc
Q 024619          188 -ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV  247 (265)
Q Consensus       188 -~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  247 (265)
                       ..+..+++.|+||.+ |.+|+|.||+++++ .+.+.....+.......+...+..+...+
T Consensus       209 ~~~~~~I~~~s~SK~~-~~~G~RiG~i~~~~-~li~~~~~~~~~~~~~~~~~~q~~a~~~l  267 (373)
T PRK07324        209 DLYEKGISTNSMSKTY-SLPGIRVGWIAANE-EVIDILRKYRDYTMICAGVFDDMLASLAL  267 (373)
T ss_pred             hccCCEEEEecchhhc-CCccceeEEEecCH-HHHHHHHHHhCcEEecCChHHHHHHHHHH
Confidence             124568999999999 67799999999865 44454555554433444444444443334

>PRK06290 aspartate aminotransferase; Provisional

Probab=99.94  E-value=1.6e-25  Score=198.28  Aligned_cols=217  Identities=16%  Similarity=0.182  Sum_probs=155.2

Q ss_pred             cceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCCh-hHHHHHHHHHhHhCCC-----ceEEecchH-H
Q 024619            9 VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNP-TRDALESLLAKLDKAD-----RALCFTSGM-A   81 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~-~~~~l~~~l~~~~g~~-----~~i~~~~g~-~   81 (265)
                      ++..+++|+.....++  ++|.+.......  ........|+..|.+ +++++++++.+.+|.+     +.|++++|+ +
T Consensus        42 ~~~~~i~L~~g~p~~~--~~~~~~~~l~~~--~~~~~~~~Y~~~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~  117 (410)
T PRK06290         42 PDMELIDMGVGEPDEM--ADESVVEVLCEE--AKKPENRGYADNGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKP  117 (410)
T ss_pred             CCCCeEEcCCCCCCCC--CCHHHHHHHHHH--HhCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHH
Confidence            3456889983333333  233333221111  111123457766776 5999999998876633     367788886 8


Q ss_pred             HHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-------CHHHHHhhcCCCceEEEEecCCCCcc
Q 024619           82 ALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQ  153 (265)
Q Consensus        82 al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~~~~~~~~i~~~~~~np~G  153 (265)
                      ++. ++..++++||.|++++|+|+.+.    ..++..|.+++.++++       |++++++.+.+++++|++++|+||||
T Consensus       118 al~~~~~~~~~~gd~Vlv~~P~y~~~~----~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~nP~NPTG  193 (410)
T PRK06290        118 ALAMLPSCFINPGDVTLMTVPGYPVTG----THTKYYGGEVYNLPLLEENNFLPDLDSIPKDIKEKAKLLYLNYPNNPTG  193 (410)
T ss_pred             HHHHHHHHhCCCCCEEEEeCCCCccHH----HHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhcccceEEEEECCCCCCC
Confidence            886 66778999999999999999986    5556789999888753       68888888888899999999999999


Q ss_pred             cccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc----C----CCCCCccEEEeccccccccCCCceeeEEEeechhHHH
Q 024619          154 QICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----R----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK  222 (265)
Q Consensus       154 ~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~----~----~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~  222 (265)
                      .+.+   +++|+++|+++|++||+||+|+...+.    .    ....+.++++.||||.+ |.+|+|+||++.+++.+ .
T Consensus       194 ~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~-g~~GlRiG~ii~~~~l~-~  271 (410)
T PRK06290        194 AVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAY-NMTGWRLAFVVGNELIV-K  271 (410)
T ss_pred             cCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCccccEEEEeechhhc-CCchhheEeEEeCHHHH-H
Confidence            9987   688999999999999999999754321    1    11124679999999999 67899999999876544 4


Q ss_pred             HHHHHHHhccCCC
Q 024619          223 ELYFLQNAEGSGL  235 (265)
Q Consensus       223 ~~~~~~~~~~~~~  235 (265)
                      .+...+.......
T Consensus       272 ~l~~~~~~~~~~~  284 (410)
T PRK06290        272 AFATVKDNNDSGQ  284 (410)
T ss_pred             HHHHHHhccccCC
Confidence            3444443333333

>PLN00175 aminotransferase family protein; Provisional

Probab=99.94  E-value=2.2e-25  Score=197.77  Aligned_cols=196  Identities=18%  Similarity=0.238  Sum_probs=150.1

Q ss_pred             CCccCCC-CCh-hHHHHHHHHHhHhCCC----ceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCC
Q 024619           46 PYDYTRS-GNP-TRDALESLLAKLDKAD----RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (265)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~~----~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~  117 (265)
                      ...|++. |.+ +++++++++.+.+|.+    +.+++++|+ +++. ++..++++||+|++++|.|+.+.    ..++..
T Consensus        84 ~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~----~~~~~~  159 (413)
T PLN00175         84 KNQYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYE----ATLSMA  159 (413)
T ss_pred             CCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHHHHHHhCCCCCEEEEeCCCchhHH----HHHHHc
Confidence            4678888 887 5999999999887642    346666664 8886 67778999999999999999886    445678


Q ss_pred             CeEEEeecCC------CHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCcC---
Q 024619          118 GVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR---  185 (265)
Q Consensus       118 g~~~~~~~~~------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~~---  185 (265)
                      |.+++.++++      |++++++.+.+++++|++++|+||||.+.+   +++|+++|++|++++|+||+|....+..   
T Consensus       160 g~~~~~v~~~~~~~~~~~~~l~~~~~~~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~  239 (413)
T PLN00175        160 GAKIKTVTLRPPDFAVPEDELKAAFTSKTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHI  239 (413)
T ss_pred             CCEEEEEECCcccCCCCHHHHHHhcCcCceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCccc
Confidence            8898888753      688999998888999999999999999974   7889999999999999999997544321   


Q ss_pred             -----CCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhcc
Q 024619          186 -----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV  247 (265)
Q Consensus       186 -----~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  247 (265)
                           ....+..|+++||||.+ +.+|+|+||++++++.+.. ............+...+..+.+.|
T Consensus       240 s~~~~~~~~~~vi~i~SfSK~~-~~~G~RiG~~v~~~~l~~~-l~~~~~~~~~~~s~~~Q~a~~~~l  304 (413)
T PLN00175        240 SMASLPGMYERTVTMNSLGKTF-SLTGWKIGWAIAPPHLTWG-VRQAHSFLTFATATPMQWAAVAAL  304 (413)
T ss_pred             ChhhCCCCcCcEEEEecchhhc-cCcchheeeeEeCHHHHHH-HHHHHhhccCCCCHHHHHHHHHHH
Confidence                 11135679999999999 6688999999988765543 444444344455555555444444

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=99.94  E-value=4.6e-25  Score=194.26  Aligned_cols=191  Identities=16%  Similarity=0.176  Sum_probs=143.9

Q ss_pred             CCccCCC-CCh-hHHHHHHHHHhHhCC----CceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCC
Q 024619           46 PYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (265)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~  117 (265)
                      ...|++. |.+ +++++++++.+.+|.    ++.+++++|+ +++. ++..++++||.|++++|+|+.+.    ..++..
T Consensus        60 ~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~----~~~~~~  135 (383)
T TIGR03540        60 NHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLAFVNPGDIVLVPDPGYPVYR----IGTLFA  135 (383)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHHHHHHHHHhCCCCCEEEEeCCCCcchH----HHHHhc
Confidence            4568877 775 699999999887665    2356676665 8886 66778999999999999999986    445678


Q ss_pred             CeEEEeecCC-------CHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc---
Q 024619          118 GVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS---  184 (265)
Q Consensus       118 g~~~~~~~~~-------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~---  184 (265)
                      |.+++.++.+       |++++++.+.+++++|++++|+||||.+.+   +++|+++|+++|+++|+||+|+...+.   
T Consensus       136 G~~v~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~  215 (383)
T TIGR03540       136 GGEPYEMPLKEENGFLPDFDAIPEDIAKKAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYK  215 (383)
T ss_pred             CCEEEEEecCcccCCccCHHHHHhhccccceEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCC
Confidence            8898888753       678888888888999999999999999987   689999999999999999999743221   


Q ss_pred             --C--CC--CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHH
Q 024619          185 --R--PL--ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI  242 (265)
Q Consensus       185 --~--~~--~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (265)
                        .  ..  ..+.++++.||||.+ |.+|+|+||++.+++.+ +.+...........+...+..
T Consensus       216 ~~~~~~~~~~~~~~i~~~SfSK~~-g~~GlRiG~~i~~~~l~-~~~~~~~~~~~~~~~~~~q~~  277 (383)
T TIGR03540       216 APSFLEVDGAKDVGIEFHSLSKTY-NMTGWRIGMAVGNADLI-AGLGKVKTNVDSGVFQAIQYA  277 (383)
T ss_pred             CcCcccCCCcccCEEEEEeccccc-CCccceeeEEeCCHHHH-HHHHHHHHhcccCCChHHHHH
Confidence              1  11  124568999999999 77899999998776544 444444433333334333333

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PLN02187 rooty/superroot1

Probab=99.94  E-value=5.9e-25  Score=197.27  Aligned_cols=202  Identities=16%  Similarity=0.195  Sum_probs=146.3

Q ss_pred             CcceeEeeccCCCCC-CCC-CCCC-eeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCC--C-ceEEecch
Q 024619            8 GVSTLLMNFSNEFDP-YGA-LSTP-LYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKA--D-RALCFTSG   79 (265)
Q Consensus         8 ~~~~~~~~~~~~~~~-~g~-~~~~-~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~--~-~~i~~~~g   79 (265)
                      +.+..+++|+ ..|. +++ ..+| ..... +.. .......+.|++. |.+ +++++++++.+.++.  + +.+++++|
T Consensus        63 ~~~~~vi~l~-~Gdp~~~p~~~~~~~~~~~-~~~-~~~~~~~~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G  139 (462)
T PLN02187         63 DVNKTILPLG-HGDPSVYPCFRTCIEAEDA-VVD-VLRSGKGNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAG  139 (462)
T ss_pred             CCCCCeEECC-CCCCCCCCCCCCCHHHHHH-HHH-HHhCCCCCCCCCCCChHHHHHHHHHHHHHhcCCCCCcccEEEeCC
Confidence            4456799998 4433 222 2222 11111 111 1112234678777 775 588888888776543  2 45555555


Q ss_pred             -HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC-------CCHHHHHhhcCCCceEEEEecCCC
Q 024619           80 -MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-------CDLDEVASAIGPWTKLVWVESPTN  150 (265)
Q Consensus        80 -~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~~~~~~~~i~~~~~~n  150 (265)
                       ++++. ++..++++||.|++++|+|+.+.    ..++..|.+++.+++       .|++++++++.++++++++++|+|
T Consensus       140 ~~~al~~~~~~l~~pGd~Vlv~~P~y~~y~----~~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~~~~~~v~i~nP~N  215 (462)
T PLN02187        140 CNQGIEIVFESLARPNANILLPRPGFPHYD----ARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIADENTVAMVVINPNN  215 (462)
T ss_pred             HHHHHHHHHHHhcCCCCEEEEeCCCCccHH----HHHHHcCCEEEEEeCccccCCccCHHHHHHhcCCCcEEEEEeCCCC
Confidence             59996 67778999999999999999986    445678888888864       268999998888899999999999


Q ss_pred             Ccccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCcC----C-C---CCCccEEEeccccccccCCCceeeEEEeec
Q 024619          151 PRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR----P-L---ELGADIVMHSATKFIAGHSDVMAGVLAVKG  217 (265)
Q Consensus       151 p~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~~----~-~---~~~~di~~~s~sK~~~g~~g~~~G~v~~~~  217 (265)
                      |||.+.+   +++|+++|+++|++||+||+|+...+..    + .   .....++++||||.| +.+|+|+||+++.+
T Consensus       216 PTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f-~~pGlRiG~~v~~~  292 (462)
T PLN02187        216 PCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGW-VVPGWKIGWIALND  292 (462)
T ss_pred             CCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEEEecchhhc-CCccceeEEEEecC
Confidence            9999976   7899999999999999999998643321    1 1   112479999999999 67899999999854

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=99.94  E-value=1.3e-25  Score=195.16  Aligned_cols=200  Identities=22%  Similarity=0.251  Sum_probs=153.8

Q ss_pred             eEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-C-ChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHH
Q 024619           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-G-NPTRDALESLLAKLDKADRALCFTSGMAALA-AVTH   88 (265)
Q Consensus        12 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g-~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~   88 (265)
                      .+++|+ +++|+|..++|.+............+....|... | .+..+++++.+++++|.++.+++++|++++. ++..
T Consensus         2 ~~~~~~-~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~iv~~sg~~a~~~~~~~   80 (349)
T cd06454           2 KVLNFC-SNDYLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGKEAALVFSSGYAANDGVLST   80 (349)
T ss_pred             Cceecc-cCCccccCCCHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhCCCCEEEeccHHHHHHHHHHH
Confidence            478999 9999999988877766433221111111122222 4 3579999999999999988899999998875 6677


Q ss_pred             hcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcC-----CCceEEEEecCCCCccccccHHHHHH
Q 024619           89 LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG-----PWTKLVWVESPTNPRQQICDIRKIAE  163 (265)
Q Consensus        89 ~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~-----~~~~~i~~~~~~np~G~~~~l~~i~~  163 (265)
                      ++++||+|++++|.|+++...    ++..|++++.++..|.+++++.+.     ++++++++++++||+|...|+++|++
T Consensus        81 ~~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~  156 (349)
T cd06454          81 LAGKGDLIISDSLNHASIIDG----IRLSGAKKRIFKHNDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAPLPELVD  156 (349)
T ss_pred             hcCCCCEEEEehhhhHHHHHH----HHHcCCceEEecCCCHHHHHHHHHHhhccCCCeEEEEeccccCCCCccCHHHHHH
Confidence            889999999999999887633    456788998888778888888775     35788899999999999999999999


Q ss_pred             HHHHcCCEEEEeCCcCCCCCcC---------CCCCCccEEEeccccccccCCCceeeEEEeechhH
Q 024619          164 MAHAHGALLLVDNSIMSPVLSR---------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       164 ~a~~~~~~li~D~~~~~~~~~~---------~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                      +|+++|+++|+|++|+.+.+..         ....+.|++++|++|+++. +   +|+++.+++..
T Consensus       157 ~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~---gG~i~~~~~~~  218 (349)
T cd06454         157 LAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGA-V---GGYIAGSKELI  218 (349)
T ss_pred             HHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhcc-c---CCEEECCHHHH
Confidence            9999999999999998665421         1234679999999999954 3   47887765544

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=99.94  E-value=1.6e-25  Score=197.68  Aligned_cols=201  Identities=16%  Similarity=0.191  Sum_probs=154.3

Q ss_pred             cceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC----CC-hhHHHHHHHHHhHhCCCceEEecchHHHH
Q 024619            9 VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS----GN-PTRDALESLLAKLDKADRALCFTSGMAAL   83 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~----g~-~~~~~l~~~l~~~~g~~~~i~~~~g~~al   83 (265)
                      .+..+|+|+ +++|+|..++|.+..........   ..+.|+..    |. +...++++.+++++|.++++++++|++|+
T Consensus        36 ~g~~~i~~~-~~~~lg~~~~~~v~~~~~~~~~~---~~~~~~~s~~~~G~~~~~~~le~~ia~~~g~~~~ii~~~~~~a~  111 (393)
T TIGR01822        36 DGREVLNFC-ANNYLGLSSHPDLIQAAKDALDE---HGFGMSSVRFICGTQDIHKELEAKIAAFLGTEDTILYASCFDAN  111 (393)
T ss_pred             CCceEEEee-CCCccccCCCHHHHHHHHHHHHH---hCCCCCCcCcccCChHHHHHHHHHHHHHhCCCcEEEECchHHHH
Confidence            345789999 99999999888766654322111   11223222    53 56899999999999999999999999888


Q ss_pred             H-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCC------CceEEEEecCCCCccccc
Q 024619           84 A-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP------WTKLVWVESPTNPRQQIC  156 (265)
Q Consensus        84 ~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~------~~~~i~~~~~~np~G~~~  156 (265)
                      . ++..++++||+|+++++.|+++...+    +..+.+.+.+...|++++++.+.+      ++++|++++++||||.+.
T Consensus       112 ~~~~~~l~~~gd~vi~~~~~~~s~~~~~----~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~  187 (393)
T TIGR01822       112 GGLFETLLGAEDAIISDALNHASIIDGV----RLCKAKRYRYANNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIA  187 (393)
T ss_pred             HHHHHHhCCCCCEEEEeccccHHHHHHH----HhcCCceEEeCCCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcC
Confidence            5 66778999999999999999887544    333444455556788888888763      788999999999999999


Q ss_pred             cHHHHHHHHHHcCCEEEEeCCcCCCCCcC---------CCCCCccEEEeccccccccCCCceeeEEEeechhH
Q 024619          157 DIRKIAEMAHAHGALLLVDNSIMSPVLSR---------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       157 ~l~~i~~~a~~~~~~li~D~~~~~~~~~~---------~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                      |+++|+++|++||+++++||+|+.+..+.         ....+.|++++|+||+++|+   ++|+++++++.+
T Consensus       188 ~l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~di~~~s~sK~l~g~---r~G~~~~~~~~~  257 (393)
T TIGR01822       188 PLDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGTLGKALGGA---SGGFTTARKEVV  257 (393)
T ss_pred             CHHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCCCCCeEEEEEChHHhhCC---CcEEEEeCHHHH
Confidence            99999999999999999999998766531         11225789999999998543   579998776544

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>PLN02483 serine palmitoyltransferase

Probab=99.94  E-value=1.8e-25  Score=201.54  Aligned_cols=203  Identities=17%  Similarity=0.234  Sum_probs=151.9

Q ss_pred             CcceeEeeccCCCCCCCCCCC-CeeeccccccCCCCCCCCCccCCC--CC-hhHHHHHHHHHhHhCCCceEEecchHHHH
Q 024619            8 GVSTLLMNFSNEFDPYGALST-PLYQTATFKQPSATENGPYDYTRS--GN-PTRDALESLLAKLDKADRALCFTSGMAAL   83 (265)
Q Consensus         8 ~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~y~~~--g~-~~~~~l~~~l~~~~g~~~~i~~~~g~~al   83 (265)
                      +...+++||+ |+||+|...+ +............. .....-++.  |. +..+++++.+++++|.++.+++++|..+.
T Consensus        97 ~~~~~~~n~~-s~~YLgl~~~~~~~~~~~~~ai~~~-g~~~~~sr~~~g~~~~~~ele~~lA~~~g~~~ai~~~~G~~an  174 (489)
T PLN02483         97 TKTRRCLNLG-SYNYLGFAAADEYCTPRVIESLKKY-SASTCSSRVDGGTTKLHRELEELVARFVGKPAAIVFGMGYATN  174 (489)
T ss_pred             CCCceEEEee-cCCccCcCCCCHHHHHHHHHHHHHh-CCCCCccccccCCcHHHHHHHHHHHHHhCCCcEEEECCHHHHH
Confidence            4567899999 9999999864 33322221111111 112223442  54 57999999999999999999999998665


Q ss_pred             -HHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcC-------CCc-----e-EEEEecCC
Q 024619           84 -AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG-------PWT-----K-LVWVESPT  149 (265)
Q Consensus        84 -~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~-------~~~-----~-~i~~~~~~  149 (265)
                       .++..++++||.|+++++.|+++.    ..++..|++++.++..|.+++++.++       +++     + +|++++..
T Consensus       175 ~~~i~al~~~Gd~Vi~d~~~h~s~~----~~~~~~Ga~v~~~~~~d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~  250 (489)
T PLN02483        175 STIIPALIGKGGLIISDSLNHNSIV----NGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIY  250 (489)
T ss_pred             HHHHHHhCCCCCEEEEcchhhHHHH----HHHHHcCCeEEEEeCCCHHHHHHHHHhhhhccccccccCCceEEEEECCCC
Confidence             467788999999999999999986    44577899999999888777766543       222     4 56667788


Q ss_pred             CCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcC---------C-CCCCccEEEeccccccccCCCceeeEEEeechh
Q 024619          150 NPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR---------P-LELGADIVMHSATKFIAGHSDVMAGVLAVKGER  219 (265)
Q Consensus       150 np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~---------~-~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~  219 (265)
                      |++|.+.++++|+++|+++|+++|+||+|+.+..+.         . ...+.||+++|+||+++ +.   +|+++++++.
T Consensus       251 s~~G~~~~l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g-~~---GG~i~~~~~l  326 (489)
T PLN02483        251 SMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFG-SC---GGYIAGSKEL  326 (489)
T ss_pred             CCCCcccCHHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhcc-cC---ceEEEcCHHH
Confidence            999999999999999999999999999998665421         1 12357999999999994 44   4899877654


Q ss_pred             H
Q 024619          220 L  220 (265)
Q Consensus       220 ~  220 (265)
                      +
T Consensus       327 i  327 (489)
T PLN02483        327 I  327 (489)
T ss_pred             H
Confidence            4

>PRK05957 aspartate aminotransferase; Provisional

Probab=99.94  E-value=1.2e-24  Score=191.80  Aligned_cols=195  Identities=19%  Similarity=0.249  Sum_probs=147.8

Q ss_pred             CccCCC-CCh-hHHHHHHHHHhHhCC----CceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC
Q 024619           47 YDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (265)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g  118 (265)
                      ..|... |.+ +++++++++++++|.    ++.+++++|+ +++. ++..++++||+|++++|+|..+.    ..++..|
T Consensus        59 ~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~----~~~~~~g  134 (389)
T PRK05957         59 HKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNAILAITDPGDEIILNTPYYFNHE----MAITMAG  134 (389)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcCHH----HHHHhcC
Confidence            567776 776 599999999999885    3466667665 8885 66777899999999999998886    3446789


Q ss_pred             eEEEeecCC-----CHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc-----C
Q 024619          119 VVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----R  185 (265)
Q Consensus       119 ~~~~~~~~~-----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~-----~  185 (265)
                      ++++.++.+     |++++++.+++++++|++++|+||||.+.+   +++|+++|+++|+++|+||+|+...+.     .
T Consensus       135 ~~~~~v~~~~~~~~d~~~l~~~i~~~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~  214 (389)
T PRK05957        135 CQPILVPTDDNYQLQPEAIEQAITPKTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFS  214 (389)
T ss_pred             CEEEEeecCCCCCcCHHHHHHhcCcCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccC
Confidence            999888754     789999999888999999999999999987   889999999999999999998743322     1


Q ss_pred             ----CCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhcc
Q 024619          186 ----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV  247 (265)
Q Consensus       186 ----~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  247 (265)
                          +...+..+++.|+||.+ |.+|+|.|+++++++.+ +.+...........+...+..+...+
T Consensus       215 ~~~~~~~~~~~i~~~S~SK~~-g~~GlRiG~~~~~~~~~-~~~~~~~~~~~~~~~~~~q~~~~~~l  278 (389)
T PRK05957        215 PGSIPGSGNHTISLYSLSKAY-GFASWRIGYMVIPIHLL-EAIKKIQDTILICPPVVSQYAALGAL  278 (389)
T ss_pred             hhhCCCccCcEEEEecchhhc-cCccceeEEEecCHHHH-HHHHHHHhhcccCCCcHHHHHHHHHH
Confidence                11224679999999999 77899999999877544 43444443333334434444433333

>PRK08068 transaminase; Reviewed

Probab=99.93  E-value=9.5e-25  Score=192.59  Aligned_cols=208  Identities=15%  Similarity=0.187  Sum_probs=148.8

Q ss_pred             eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCC--C-c-eEEecch-HHHH
Q 024619           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKA--D-R-ALCFTSG-MAAL   83 (265)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~--~-~-~i~~~~g-~~al   83 (265)
                      ..+++|+ .++..... +|.+.... .. .........|++. |.+ +++++++++.+.+|.  + + .+++++| ++++
T Consensus        32 ~~~i~l~-~~~p~~~~-~~~~~~~~-~~-~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l  107 (389)
T PRK08068         32 HDVINLG-QGNPDQPT-PEHIVEAL-QE-AAENPANHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGL  107 (389)
T ss_pred             CCeEEec-CCCCCCCC-CHHHHHHH-HH-HHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHH
Confidence            3579999 55543332 23332221 11 1111234578766 776 599999999877663  2 3 4555555 5887


Q ss_pred             H-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-------CHHHHHhhcCCCceEEEEecCCCCcccc
Q 024619           84 A-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQI  155 (265)
Q Consensus        84 ~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~~~~~~~~i~~~~~~np~G~~  155 (265)
                      . ++..++++||.|++++|+|+.+.    ..++..|++++.++++       |++++++++.+++++|++++|+||||.+
T Consensus       108 ~~~~~~~~~~gd~vlv~~P~y~~~~----~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPTG~~  183 (389)
T PRK08068        108 VELPQCLMNPGDTILVPDPGYPDYL----SGVALARAQFETMPLIAENNFLPDYTKIPEEVAEKAKLMYLNYPNNPTGAV  183 (389)
T ss_pred             HHHHHHhCCCCCEEEEcCCCCcchH----HHHHhcCCEEEEeecccccCCCCCHHHHHHhccccceEEEEECCCCCCCCc
Confidence            5 67778999999999999999996    5557789999888753       5788888887889999999999999999


Q ss_pred             cc---HHHHHHHHHHcCCEEEEeCCcCCCCCc-----CCC----CCCccEEEeccccccccCCCceeeEEEeechhHHHH
Q 024619          156 CD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE  223 (265)
Q Consensus       156 ~~---l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~~----~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~  223 (265)
                      .+   +++|+++|++++++||+||+|+...+.     ...    ..+..+++.||||.| |.+|+|.||++.+++.+ +.
T Consensus       184 ~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~-g~~GlRiG~~~~~~~l~-~~  261 (389)
T PRK08068        184 ATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTF-NMAGWRVAFAVGNESVI-EA  261 (389)
T ss_pred             CCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhcc-CCccceeEeEecCHHHH-HH
Confidence            76   478889999999999999999642211     101    123569999999999 67899999999776544 43


Q ss_pred             HHHHH
Q 024619          224 LYFLQ  228 (265)
Q Consensus       224 ~~~~~  228 (265)
                      +....
T Consensus       262 l~~~~  266 (389)
T PRK08068        262 INLLQ  266 (389)
T ss_pred             HHHHH
Confidence            33333

>PRK12414 putative aminotransferase; Provisional

Probab=99.93  E-value=4.8e-25  Score=194.12  Aligned_cols=196  Identities=18%  Similarity=0.241  Sum_probs=147.4

Q ss_pred             CCccCCC-CCh-hHHHHHHHHHhHhCCC-----ceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCC
Q 024619           46 PYDYTRS-GNP-TRDALESLLAKLDKAD-----RALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (265)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~~-----~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~  117 (265)
                      ...|++. |.+ +++++++++++++|.+     ++++++++++++. ++..++++||+|++++|+|..+.    ..++..
T Consensus        59 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~  134 (384)
T PRK12414         59 HNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYAAISALVHPGDEVIYFEPSFDSYA----PIVRLQ  134 (384)
T ss_pred             CCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHHHHHhcCCCCEEEEeCCCccchH----HHHHHc
Confidence            4678776 876 5999999999998863     3555555568886 67788999999999999998886    444567


Q ss_pred             CeEEEeecCC------CHHHHHhhcCCCceEEEEecCCCCccccc---cHHHHHHHHHHcCCEEEEeCCcCCCCCc----
Q 024619          118 GVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQIC---DIRKIAEMAHAHGALLLVDNSIMSPVLS----  184 (265)
Q Consensus       118 g~~~~~~~~~------d~~~l~~~~~~~~~~i~~~~~~np~G~~~---~l~~i~~~a~~~~~~li~D~~~~~~~~~----  184 (265)
                      |.+++.++.+      |++++++.+.+++++|++++|+||||.+.   ++++|+++|+++|+++|+||+|....+.    
T Consensus       135 g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~  214 (384)
T PRK12414        135 GATPVAIKLSPEDFRVNWDEVAAAITPRTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARH  214 (384)
T ss_pred             CCEEEEEecCccccccCHHHHHhhcCcccEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCc
Confidence            8888887753      68999998888899999999999999985   5788999999999999999999753321    


Q ss_pred             CCC-----CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhcc
Q 024619          185 RPL-----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV  247 (265)
Q Consensus       185 ~~~-----~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  247 (265)
                      .+.     ..+..+++.||||.+ |.+|+|+||++++++.+.. +...........+...+..+.+.|
T Consensus       215 ~~~~~~~~~~~~~i~~~SfSK~~-~~pGlRiG~~v~~~~l~~~-l~~~~~~~~~~~s~~~q~a~~~~l  280 (384)
T PRK12414        215 HSMARHRELAERSVIVSSFGKSY-HVTGWRVGYCLAPAELMDE-IRKVHQFMVFSADTPMQHAFAEAL  280 (384)
T ss_pred             cCcccCcCccCcEEEEecccccc-cCccceEEEEecCHHHHHH-HHHHHhheecCCCcHHHHHHHHHh
Confidence            111     123579999999999 6789999999988765533 444443334444544444443433

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=99.93  E-value=7.7e-25  Score=193.13  Aligned_cols=178  Identities=15%  Similarity=0.140  Sum_probs=137.2

Q ss_pred             CCccCCC-CCh-hHHHHHHHHHhHhCC--C-c-eEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCC
Q 024619           46 PYDYTRS-GNP-TRDALESLLAKLDKA--D-R-ALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (265)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~--~-~-~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~  117 (265)
                      .+.|++. |.+ +++++++++.+.+|.  + + .+++++|+ +++. ++..++++||+|++++|+|+.+.    ..++..
T Consensus        61 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~al~~~~~~l~~~gd~Vlv~~P~y~~~~----~~~~~~  136 (388)
T PRK07366         61 THGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTAHLPLAVLNPGDFALLLDPGYPSHA----GGVYLA  136 (388)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchH----HHHHhc
Confidence            4568776 776 599999999887663  3 3 57777775 8886 66778999999999999999996    555778


Q ss_pred             CeEEEeecCC-------CHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc---
Q 024619          118 GVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS---  184 (265)
Q Consensus       118 g~~~~~~~~~-------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~---  184 (265)
                      |.+++.++++       |++++++.+.+++++|++++||||||.+.+   +++|+++|+++|++||+||+|....+.   
T Consensus       137 g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~  216 (388)
T PRK07366        137 GGQIYPMPLRAENDFLPVFADIPTEVLAQARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEV  216 (388)
T ss_pred             CCEEEEEECCCccCCCCCHHHHHHhhcccceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCC
Confidence            9999888753       567777777778999999999999999975   578888999999999999999744321   


Q ss_pred             ---CCCC----CCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHH
Q 024619          185 ---RPLE----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN  229 (265)
Q Consensus       185 ---~~~~----~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~  229 (265)
                         ....    ....++++||||.+ |.+|+|+||++++++.+ +.+...+.
T Consensus       217 ~~~~~~~~~~~~~~vi~~~SfSK~~-g~~GlRiG~~v~~~~li-~~l~~~~~  266 (388)
T PRK07366        217 EPPSILQADPEKSVSIEFFTLSKSY-NMGGFRIGFAIGNAQLI-QALRQVKA  266 (388)
T ss_pred             CCCChhhCCCCcccEEEEeeccccc-CCcchhheehcCCHHHH-HHHHHHHh
Confidence               1111    12458899999999 67899999999876554 43433433

>PRK06348 aspartate aminotransferase; Provisional

Probab=99.93  E-value=1.4e-24  Score=191.26  Aligned_cols=191  Identities=16%  Similarity=0.193  Sum_probs=143.4

Q ss_pred             CCCccCCC-CCh-hHHHHHHHHHhHhCCC---ceEEecch-HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCC
Q 024619           45 GPYDYTRS-GNP-TRDALESLLAKLDKAD---RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (265)
Q Consensus        45 ~~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~~~g-~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~  117 (265)
                      ....|++. |.+ +++++++++.+.+|..   +.+++++| ++++. ++..++++||+|++++|+|+.+.    ..++..
T Consensus        58 ~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~----~~~~~~  133 (384)
T PRK06348         58 GHTRYTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQSILDPGDEVIIHEPYFTPYK----DQIEMV  133 (384)
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCCcchH----HHHHHc
Confidence            34678877 776 5999999998765432   45555555 58886 67778999999999999999997    444566


Q ss_pred             CeEEEeecC-------CCHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCcC--
Q 024619          118 GVVVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR--  185 (265)
Q Consensus       118 g~~~~~~~~-------~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~~--  185 (265)
                      |.+++.++.       .|++++++.+.+++++|++++|+||||.+.+   +++|+++|+++|++||+||+|+...+..  
T Consensus       134 g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~  213 (384)
T PRK06348        134 GGKPIILETYEEDGFQINVKKLEALITSKTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDF  213 (384)
T ss_pred             CCEEEEecCCcCcCCcCCHHHHHHhhCcCccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCc
Confidence            778877763       3689999988888999999999999999975   7889999999999999999998543221  


Q ss_pred             -C---CC--CCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHH
Q 024619          186 -P---LE--LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCW  241 (265)
Q Consensus       186 -~---~~--~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (265)
                       +   ..  .+..+++.||||.+ +.+|+|+||++++++. .+.....+.......+...+.
T Consensus       214 ~~~~~~~~~~~~vi~~~SfSK~~-~l~GlRiG~~v~~~~~-~~~~~~~~~~~~~~~~~~~q~  273 (384)
T PRK06348        214 VPMATLAGMPERTITFGSFSKDF-AMTGWRIGYVIAPDYI-IETAKIINEGICFSAPTISQR  273 (384)
T ss_pred             cchhhcCCCcCcEEEEecchhcc-CCccccceeeecCHHH-HHHHHHHHHhccCCCCHHHHH
Confidence             1   11  34679999999999 6678999999987654 444444444333444544433

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=99.93  E-value=1.5e-24  Score=191.76  Aligned_cols=221  Identities=19%  Similarity=0.262  Sum_probs=157.3

Q ss_pred             ceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCCC-----ceEEecchH-H
Q 024619           10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKAD-----RALCFTSGM-A   81 (265)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~~-----~~i~~~~g~-~   81 (265)
                      +..+++|+ .++..-. +++.+.... ... .  .....|++. |.+ +++++++++.+.+|.+     +.+++++|+ +
T Consensus        28 ~~~~i~l~-~~~p~~~-~~~~~~~~~-~~~-~--~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~  101 (396)
T PRK09147         28 DLPPISLS-IGEPKHP-TPAFIKDAL-AAN-L--DGLASYPTTAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSRE  101 (396)
T ss_pred             CCCeEecC-CCCCCCC-CCHHHHHHH-HHH-h--hhhcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHH
Confidence            45788898 4443211 223332221 111 1  135678877 776 5999999998887732     367777775 8


Q ss_pred             HHH-HHHHhcCC---CCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-------CHHHHHhhcCCCceEEEEecCCC
Q 024619           82 ALA-AVTHLLGT---GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTN  150 (265)
Q Consensus        82 al~-~~~~~~~~---g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~~~~~~~~i~~~~~~n  150 (265)
                      ++. ++..++++   ||.|++++|+|+.+.    ..++..|++++.++++       |++++++.+.++++++++++|+|
T Consensus       102 al~~~~~~l~~~~~~gd~vlv~~P~y~~~~----~~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~~~k~i~l~nP~N  177 (396)
T PRK09147        102 ALFAFAQTVIDRDGPGPLVVCPNPFYQIYE----GAALLAGAEPYFLNCDPANNFAPDFDAVPAEVWARTQLLFVCSPGN  177 (396)
T ss_pred             HHHHHHHHHcCCCCCCCEEEEcCCCccchH----HHHHhcCCEEEEeccCccccCccCHHHHHHHHhhccEEEEEcCCCC
Confidence            886 67778999   899999999999886    5557789999998753       67888887777899999999999


Q ss_pred             Ccccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCcC---C---------C---CCCccEEEeccccccccCCCceeeE
Q 024619          151 PRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR---P---------L---ELGADIVMHSATKFIAGHSDVMAGV  212 (265)
Q Consensus       151 p~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~~---~---------~---~~~~di~~~s~sK~~~g~~g~~~G~  212 (265)
                      |||.+.+   +++|+++|++|+++||+||+|+...+..   +         .   ..+..+++.||||.+ +.+|+|+||
T Consensus       178 PTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-~~~GlRiG~  256 (396)
T PRK09147        178 PTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRS-NVPGLRSGF  256 (396)
T ss_pred             CcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEecccccc-CCccceeee
Confidence            9999974   7889999999999999999997543211   0         0   124569999999988 568899999


Q ss_pred             EEeechhHHHHHHHHHHhccCCCChhHHHH
Q 024619          213 LAVKGERLAKELYFLQNAEGSGLAPFDCWI  242 (265)
Q Consensus       213 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (265)
                      ++++++.+ +.....+......++...+..
T Consensus       257 ~~~~~~l~-~~~~~~~~~~~~~~~~~~q~a  285 (396)
T PRK09147        257 VAGDAALL-KKFLLYRTYHGCAMPPAVQAA  285 (396)
T ss_pred             ecCCHHHH-HHHHHHhhhcccCCCHHHHHH
Confidence            99876544 434444433344455444433

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=99.93  E-value=1.9e-24  Score=190.38  Aligned_cols=191  Identities=16%  Similarity=0.150  Sum_probs=143.3

Q ss_pred             CCccCCC-CCh-hHHHHHHHHHhHhCC----CceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCC
Q 024619           46 PYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (265)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~  117 (265)
                      ...|++. |.+ +++++++++.+.+|.    ++.+++++|+ +++. ++..++++||+|++++|+|+.+.    ..++..
T Consensus        62 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i~~~~~~~~~~gd~Vl~~~P~y~~~~----~~~~~~  137 (385)
T PRK09276         62 NHQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGIAHIPLAFVNPGDVVLVPDPGYPVYK----IGTIFA  137 (385)
T ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhCCCCCEEEEcCCCCcChH----HHHHHc
Confidence            4568777 775 599999999877664    2357776665 8886 66778999999999999999986    455678


Q ss_pred             CeEEEeecCC-------CHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc---
Q 024619          118 GVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS---  184 (265)
Q Consensus       118 g~~~~~~~~~-------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~---  184 (265)
                      |.+++.++.+       |++++++.+.+++++|++++|+||||.+.+   +++|+++|+++|++||+||+|....+.   
T Consensus       138 g~~~~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~  217 (385)
T PRK09276        138 GGEPYFMPLKEENGFLPDLDAIPEDVAKKAKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYK  217 (385)
T ss_pred             CCEEEEEecCCCCCCcCCHHHHHHhccccceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCC
Confidence            8888887752       578888888888999999999999999987   589999999999999999999743321   


Q ss_pred             --CCC----CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHH
Q 024619          185 --RPL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI  242 (265)
Q Consensus       185 --~~~----~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (265)
                        ...    ..+.++++.||||.+ |.+|+|+||++++++.+ +.....+.......+...+..
T Consensus       218 ~~~~~~~~~~~~~~i~~~S~SK~~-g~~GlRiG~~i~~~~l~-~~~~~~~~~~~~~~~~~~q~~  279 (385)
T PRK09276        218 PPSFLEVPGAKDVGIEFHSLSKTY-NMTGWRIGFAVGNADLI-AGLGKVKSNVDSGVFQAIQEA  279 (385)
T ss_pred             CCChhccCCCcCCEEEEecchhhc-CCcchhheeeeCCHHHH-HHHHHHHhhccCCCCHHHHHH
Confidence              111    124579999999999 77899999999876544 444444443333344333333

>PRK07179 hypothetical protein; Provisional

Probab=99.93  E-value=6e-25  Score=194.93  Aligned_cols=203  Identities=16%  Similarity=0.119  Sum_probs=157.8

Q ss_pred             CcceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC--CChhHHHHHHHHHhHhCCCceEEecchHHHHH-
Q 024619            8 GVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS--GNPTRDALESLLAKLDKADRALCFTSGMAALA-   84 (265)
Q Consensus         8 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~--g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-   84 (265)
                      +++..+++|+ +|||+|...+|.+.................-+..  |.+...++++.+++++|.+.++++++|++|+. 
T Consensus        51 ~~g~~~~~~~-~~~YL~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~~~~~~~~sG~~An~~  129 (407)
T PRK07179         51 TPGPDAIILQ-SNDYLNLSGHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFTGFESCLLCQSGWAANVG  129 (407)
T ss_pred             CCCCcEEEee-cCCccCCCCCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHhCCCcEEEECCHHHHHHH
Confidence            4556789999 9999999999988776543322111111111111  44678999999999999998999999998885 


Q ss_pred             HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCC-CceEEEEecCCCCccccccHHHHHH
Q 024619           85 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAE  163 (265)
Q Consensus        85 ~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~-~~~~i~~~~~~np~G~~~~l~~i~~  163 (265)
                      ++..+..+||.|+++.+.|.+...    .++..|.+++.++..|++++++.+.+ ++++|++++++||+|.+.|+++|.+
T Consensus       130 ~l~~l~~~g~~v~~~~~~h~s~~~----~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~lV~v~~v~n~tG~i~pl~~I~~  205 (407)
T PRK07179        130 LLQTIADPNTPVYIDFFAHMSLWE----GVRAAGAQAHPFRHNDVDHLRRQIERHGPGIIVVDSVYSTTGTIAPLADIVD  205 (407)
T ss_pred             HHHHhCCCCCEEEEECCcCHHHHH----HHHHCCCeEEEecCCCHHHHHHHHHhcCCeEEEECCCCCCCCccccHHHHHH
Confidence            777888999999999998877753    33456788888888899999998875 5889999999999999999999999


Q ss_pred             HHHHcCCEEEEeCCcCCCCCcC-------CC--CCCccEEEeccccccccCCCceeeEEEeechh
Q 024619          164 MAHAHGALLLVDNSIMSPVLSR-------PL--ELGADIVMHSATKFIAGHSDVMAGVLAVKGER  219 (265)
Q Consensus       164 ~a~~~~~~li~D~~~~~~~~~~-------~~--~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~  219 (265)
                      +|+++|+++|+||+|+.+..+.       ..  ..+.|+++.|++|++++    ++|+++++++.
T Consensus       206 l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~~g~----~~G~l~~~~~~  266 (407)
T PRK07179        206 IAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKAFAG----RAGIITCPREL  266 (407)
T ss_pred             HHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEeechHhhhc----cCeEEEeCHHH
Confidence            9999999999999998765421       11  12468999999999953    36888887644

>PRK08912 hypothetical protein; Provisional

Probab=99.93  E-value=1.7e-24  Score=190.96  Aligned_cols=178  Identities=25%  Similarity=0.306  Sum_probs=138.4

Q ss_pred             CCccCCC-CCh-hHHHHHHHHHhHhCCC---c-eEEecch-HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCC
Q 024619           46 PYDYTRS-GNP-TRDALESLLAKLDKAD---R-ALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (265)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~-~i~~~~g-~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~  117 (265)
                      ...|++. |.+ +++++++++.+.+|.+   + .+++++| ++++. ++..++++||+|++++|+|+.+.    ..++..
T Consensus        56 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~Vlv~~p~y~~~~----~~~~~~  131 (387)
T PRK08912         56 SNQYPPMMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAALLALVEPGDEVVLFQPLYDAYL----PLIRRA  131 (387)
T ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhH----HHHHHc
Confidence            4668887 876 5999999998876642   2 4555555 58886 67778899999999999999886    455778


Q ss_pred             CeEEEeecCC------CHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc----
Q 024619          118 GVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----  184 (265)
Q Consensus       118 g~~~~~~~~~------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~----  184 (265)
                      |.+++.++.+      |++++++.+.+++++|++++|+||||.+.+   +++|+++|+++++++|+||+|+...+.    
T Consensus       132 g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~  211 (387)
T PRK08912        132 GGVPRLVRLEPPHWRLPRAALAAAFSPRTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRH  211 (387)
T ss_pred             CCEEEEEecCcccCcCCHHHHHHHhCccceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCC
Confidence            8888877653      679999988888999999999999999976   678999999999999999998643221    


Q ss_pred             ----CCC-CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHH
Q 024619          185 ----RPL-ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN  229 (265)
Q Consensus       185 ----~~~-~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~  229 (265)
                          ... ..+.+++++|+||.+ |.+|+|.|+++++++.+.. +.....
T Consensus       212 ~~~~~~~~~~~~~i~~~S~SK~~-g~~GlRiG~~~~~~~~~~~-l~~~~~  259 (387)
T PRK08912        212 IPLMTLPGMRERTVKIGSAGKIF-SLTGWKVGFVCAAPPLLRV-LAKAHQ  259 (387)
T ss_pred             cChhhCCCccCceEEEeechhhc-cCcCceeEEEecCHHHHHH-HHHHHh
Confidence                111 135689999999999 7789999999987755433 333333

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=99.93  E-value=6.7e-25  Score=196.44  Aligned_cols=187  Identities=21%  Similarity=0.284  Sum_probs=146.9

Q ss_pred             CCccCCC-CCh-hHHHHHHHHHhHhCCC---ceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC
Q 024619           46 PYDYTRS-GNP-TRDALESLLAKLDKAD---RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (265)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g  118 (265)
                      ...|.+. |.+ +++++.+++....|..   +.|++|+|+ +|+. +...+++|||.|++++|+|+...    .+++..|
T Consensus       125 ~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al~l~~~~l~~pGd~v~vE~PtY~~~~----~~~~~~g  200 (459)
T COG1167         125 ALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQALDLLLRLLLDPGDTVLVEDPTYPGAL----QALEALG  200 (459)
T ss_pred             hhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCcHHHH----HHHHHcC
Confidence            4678885 885 5999999999665543   477777776 8997 66778999999999999998887    5667889


Q ss_pred             eEEEeecCC----CHHHHHhhcCC-CceEEEE-ecCCCCccccccH---HHHHHHHHHcCCEEEEeCCcCCCCCc-----
Q 024619          119 VVVKRVNTC----DLDEVASAIGP-WTKLVWV-ESPTNPRQQICDI---RKIAEMAHAHGALLLVDNSIMSPVLS-----  184 (265)
Q Consensus       119 ~~~~~~~~~----d~~~l~~~~~~-~~~~i~~-~~~~np~G~~~~l---~~i~~~a~~~~~~li~D~~~~~~~~~-----  184 (265)
                      .+++.++++    |+|++++.+.+ +++++++ ++.+||||..+++   ++|+++|++||++||+||.|+...+.     
T Consensus       201 ~~~~~vp~d~~G~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~  280 (459)
T COG1167         201 ARVIPVPVDEDGIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPP  280 (459)
T ss_pred             CcEEecCCCCCCCCHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCC
Confidence            999999876    79999999874 6888766 6688999999875   78999999999999999999854442     


Q ss_pred             ---CCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhH
Q 024619          185 ---RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFD  239 (265)
Q Consensus       185 ---~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (265)
                         .....+.+|+++||||.+ + ||+|+||+++++..+ +.+...........+...
T Consensus       281 ~l~~ld~~~rViy~gSFSK~l-~-PglRlG~vv~p~~~~-~~~~~~k~~~~~~~s~~~  335 (459)
T COG1167         281 PLKALDAPGRVIYLGSFSKTL-A-PGLRLGYVVAPPELI-EKLLRLKQAADLGPSSLS  335 (459)
T ss_pred             ChHhhCCCCCEEEEeeehhhc-c-cccceeeeeCCHHHH-HHHHHHHHHhcCCCChHH
Confidence               112237899999999999 4 579999999887555 444444444444455444

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=99.93  E-value=3.9e-24  Score=186.15  Aligned_cols=185  Identities=19%  Similarity=0.260  Sum_probs=142.6

Q ss_pred             CCccCCC-CCh-hHHHHHHHHHhHhCC--C-c-eEEecchH-HHHH-HHHHhcCCC---CEEEEcCCCCCChHHHHHhhc
Q 024619           46 PYDYTRS-GNP-TRDALESLLAKLDKA--D-R-ALCFTSGM-AALA-AVTHLLGTG---EEIVAGDDLYGGTDRLLSRVT  114 (265)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~--~-~-~i~~~~g~-~al~-~~~~~~~~g---~~viv~~~~~~~~~~~~~~~~  114 (265)
                      ...|+.. |.+ +++++++++.+.+|.  + + .+++++|+ +++. ++..++++|   |+|+++.|+|+.+.    ..+
T Consensus        29 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~~~~~~g~~~d~Vl~~~p~y~~~~----~~~  104 (350)
T TIGR03537        29 VSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVFIDPEEDRRRVIFGTPGYPVYE----RGA  104 (350)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHHcCCCCCCceEEEcCCCCcchH----HHH
Confidence            4568776 775 699999999888773  2 3 67777776 8886 667788887   69999999999997    555


Q ss_pred             CCCCeEEEeecCC-------CHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc
Q 024619          115 PKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS  184 (265)
Q Consensus       115 ~~~g~~~~~~~~~-------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~  184 (265)
                      +..|++++.++.+       |++++++++.++++++++++|+||||.+.+   +++|+++|+++|+++|+||+|+...+.
T Consensus       105 ~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~  184 (350)
T TIGR03537       105 LFAGGEPTAVKLKKEDGFLLRLEKVEKSILEETKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFG  184 (350)
T ss_pred             HhcCCEEEEcccCcccCCccCHHHHHHhhhhccEEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccC
Confidence            7789999988753       688999988889999999999999999987   899999999999999999999754332


Q ss_pred             C----C--CCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCC
Q 024619          185 R----P--LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA  236 (265)
Q Consensus       185 ~----~--~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~  236 (265)
                      .    .  .+.+..+++.|+||.+ |.+|+|+|+++.+++.. +.+...........+
T Consensus       185 ~~~~~~~~~~~~~~i~~~s~SK~~-g~~GlRiG~~~~~~~~~-~~~~~~~~~~~~~~~  240 (350)
T TIGR03537       185 EPPHSALEVGIENVLAFHSLSKRS-GMTGYRSGFVAGDEKLI-SFLRKLRANFGVASP  240 (350)
T ss_pred             CCCCchhhcCcCCEEEEeeccccc-CCccccceeeecCHHHH-HHHHHHHHhhccCCC
Confidence            1    1  1234679999999999 66799999998765444 444444433333333

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.93  E-value=6.8e-25  Score=193.20  Aligned_cols=197  Identities=16%  Similarity=0.212  Sum_probs=148.1

Q ss_pred             eeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC--CC-hhHHHHHHHHHhHhCCCceEEecchHHHH-HHHHHh
Q 024619           14 MNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS--GN-PTRDALESLLAKLDKADRALCFTSGMAAL-AAVTHL   89 (265)
Q Consensus        14 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~--g~-~~~~~l~~~l~~~~g~~~~i~~~~g~~al-~~~~~~   89 (265)
                      ++|+ +|||+|+..+|.++......-+.... +.+-++.  |+ ....++++.+++++|.++.+++++|+.+. .++..+
T Consensus         1 ~~f~-s~dyLgl~~~~~~~~~~~~a~~~~g~-~~~~sr~~yg~~~~~~~LE~~lA~~~g~e~al~~~sG~~a~~~~i~~l   78 (392)
T PLN03227          1 LNFA-THDFLSTSSSPTLRQTALESLSHYGC-GSCGPRGFYGTIDAHLELEQCMAEFLGTESAILYSDGASTTSSTVAAF   78 (392)
T ss_pred             CCCc-CcCccCCCCCHHHHHHHHHHHHHhCC-CCcccccccCChHHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHHHh
Confidence            5899 99999999999887765333222211 1111222  33 46999999999999999999999998655 678889


Q ss_pred             cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHh---hcC-----------CCceEEEEecCCCCcccc
Q 024619           90 LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVAS---AIG-----------PWTKLVWVESPTNPRQQI  155 (265)
Q Consensus        90 ~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~---~~~-----------~~~~~i~~~~~~np~G~~  155 (265)
                      +++||.|+++++.|++....+    ...+.+++.++..|.+++++   .+.           +++++|++++++||+|.+
T Consensus        79 ~~~GD~Vl~~~~~h~s~~~~~----~l~~~~~~~~~~~d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i  154 (392)
T PLN03227         79 AKRGDLLVVDRGVNEALLVGV----SLSRANVRWFRHNDMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTL  154 (392)
T ss_pred             CCCCCEEEEeccccHHHHHHH----HHcCCeEEEeCCCCHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcc
Confidence            999999999999999886443    33445777777665554443   332           357899999999999999


Q ss_pred             ccHHHHHHHHHHcCCEEEEeCCcCCCCCcCC-----------CCCCccEEEeccccccccCCCceeeEEEeechhH
Q 024619          156 CDIRKIAEMAHAHGALLLVDNSIMSPVLSRP-----------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       156 ~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~-----------~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                      .|+++|.++|++||+++|+||+|+.+..+..           -..+.|+++.|++|.+ |+.   +|+++++++.+
T Consensus       155 ~~l~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~-g~~---gg~v~~~~~~~  226 (392)
T PLN03227        155 APLKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAF-GSV---GGMTVGSEEVV  226 (392)
T ss_pred             cCHHHHHHHHHHcCCEEEEECcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhh-hcc---CcEEecCHHHH
Confidence            9999999999999999999999986655321           1235699999999987 443   58887665443

>PRK06108 aspartate aminotransferase; Provisional

Probab=99.93  E-value=2.7e-24  Score=189.23  Aligned_cols=190  Identities=26%  Similarity=0.282  Sum_probs=142.8

Q ss_pred             CCccCCC-CCh-hHHHHHHHHHhHhC--CC--ceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC
Q 024619           46 PYDYTRS-GNP-TRDALESLLAKLDK--AD--RALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (265)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g--~~--~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g  118 (265)
                      ...|++. |.+ +++++++++.+.+|  .+  ++++++++++++. ++..++++||.|++++|+|+.+.    ..++..|
T Consensus        54 ~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~----~~~~~~g  129 (382)
T PRK06108         54 ETFYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQALVGPGDEVVAVTPLWPNLV----AAPKILG  129 (382)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCccchH----HHHHHCC
Confidence            3458877 876 59999999998877  33  3444445568886 66778899999999999999886    4456788


Q ss_pred             eEEEeecCC--------CHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc---
Q 024619          119 VVVKRVNTC--------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS---  184 (265)
Q Consensus       119 ~~~~~~~~~--------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~---  184 (265)
                      ++++.++.+        |++++++.+.+++++|++++|+||||.+.+   +++|+++|+++|+++|+||+|+...+.   
T Consensus       130 ~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~  209 (382)
T PRK06108        130 ARVVCVPLDFGGGGWTLDLDRLLAAITPRTRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGG  209 (382)
T ss_pred             CEEEEeeCCCCCCCccCCHHHHHHhcCccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCC
Confidence            998888753        678999888888999999999999999874   688999999999999999998754332   


Q ss_pred             ---C---CC-CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHH
Q 024619          185 ---R---PL-ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCW  241 (265)
Q Consensus       185 ---~---~~-~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (265)
                         .   .. ..+.++++.|+||.+ |.+|+|.|+++++++.+.. +...........+...+.
T Consensus       210 ~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~RiG~~~~~~~~~~~-~~~~~~~~~~~~~~~~q~  271 (382)
T PRK06108        210 RAPSFLDIAEPDDRIIFVNSFSKNW-AMTGWRLGWLVAPPALGQV-LEKLIEYNTSCVAQFVQR  271 (382)
T ss_pred             CCCCHhhcCCCcCCEEEEeechhhc-cCcccceeeeeCCHHHHHH-HHHHHHhcccCCChHHHH
Confidence               0   01 124579999999999 6678999999987765543 333333333344444433

>PRK08960 hypothetical protein; Provisional

Probab=99.93  E-value=4.5e-24  Score=188.18  Aligned_cols=191  Identities=21%  Similarity=0.206  Sum_probs=139.8

Q ss_pred             CCccCCC-CCh-hHHHHHHHHHhHhCC--C-ceEEecch-HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC
Q 024619           46 PYDYTRS-GNP-TRDALESLLAKLDKA--D-RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (265)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~--~-~~i~~~~g-~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g  118 (265)
                      ...|.+. |.+ +++.+++++.+.+|.  + +.+++++| ++++. ++..++++||+|++++|+|+.+...    ++..|
T Consensus        62 ~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~----~~~~g  137 (387)
T PRK08960         62 HTRYTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLLVDPGKHWLLADPGYPCNRHF----LRLVE  137 (387)
T ss_pred             CCccCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHHH----HHhcC
Confidence            3567666 776 588888888876553  2 45555555 59986 6677789999999999999999743    34567


Q ss_pred             eEEEeecC-------CCHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc----
Q 024619          119 VVVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----  184 (265)
Q Consensus       119 ~~~~~~~~-------~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~----  184 (265)
                      .+++.+++       .|++++++.+.++++++++++|+||||.+.+   +++|+++|+++|+++|+||+|..-.+.    
T Consensus       138 ~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~  217 (387)
T PRK08960        138 GAAQLVPVGPDSRYQLTPALVERHWNADTVGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAA  217 (387)
T ss_pred             CeEEEEecCcccCCCCCHHHHHHHhCccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCC
Confidence            77776664       2678999888888999999999999999976   567888899999999999998743322    


Q ss_pred             CCCC-CCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHH
Q 024619          185 RPLE-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI  242 (265)
Q Consensus       185 ~~~~-~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (265)
                      .... .+..++++|+||.+ |.+|+|+||++++++.+ +.+...........+...+..
T Consensus       218 ~~~~~~~~vi~~~S~SK~~-g~~GlRiG~~~~~~~~~-~~~~~~~~~~~~~~s~~~q~a  274 (387)
T PRK08960        218 SVLEVDDDAFVLNSFSKYF-GMTGWRLGWLVAPPAAV-PELEKLAQNLYISASTPAQHA  274 (387)
T ss_pred             ChhhccCCEEEEeeccccc-CCcccEEEEEEcCHHHH-HHHHHHHhhhccCCCHHHHHH
Confidence            1111 23568999999999 67899999999887554 434444443344445444333

>PLN02368 alanine transaminase

Probab=99.93  E-value=3.8e-24  Score=188.79  Aligned_cols=197  Identities=15%  Similarity=0.196  Sum_probs=144.9

Q ss_pred             CCCccCCC-CCh-hHHHHHHHHHhHhCCC---ceEEecchH-HHHH-HHHHhc-CCCCEEEEcCCCCCChHHHHHhhcCC
Q 024619           45 GPYDYTRS-GNP-TRDALESLLAKLDKAD---RALCFTSGM-AALA-AVTHLL-GTGEEIVAGDDLYGGTDRLLSRVTPK  116 (265)
Q Consensus        45 ~~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~~~g~-~al~-~~~~~~-~~g~~viv~~~~~~~~~~~~~~~~~~  116 (265)
                      ....|++. |.+ +++++.+++.+.+|.+   +.|++++|+ +++. ++..++ ++||+|++++|+|+.+.    ..++.
T Consensus        99 ~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y~~y~----~~~~~  174 (407)
T PLN02368         99 GLGAYSDSRGLPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLYS----ATISL  174 (407)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcCCCCCEEEEeCCCCccHH----HHHHH
Confidence            35678887 875 6999999998887642   466677765 8886 666676 79999999999999997    45567


Q ss_pred             CCeEEEeecCC-------CHHHHHhhcCC------CceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCC
Q 024619          117 TGVVVKRVNTC-------DLDEVASAIGP------WTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMS  180 (265)
Q Consensus       117 ~g~~~~~~~~~-------d~~~l~~~~~~------~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~  180 (265)
                      .|.+++.++++       |++++++.+.+      +++++++++|+||||.+.+   +++|+++|++||++||+||+|..
T Consensus       175 ~g~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~  254 (407)
T PLN02368        175 LGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQ  254 (407)
T ss_pred             cCCEEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccc
Confidence            88888888642       68889888753      6899999999999999975   68899999999999999999975


Q ss_pred             CCCcC-----C-------C-----CCCccEEEeccccccccCCCceeeEEEe---echhHHHHHHHHHHhccCCCChhHH
Q 024619          181 PVLSR-----P-------L-----ELGADIVMHSATKFIAGHSDVMAGVLAV---KGERLAKELYFLQNAEGSGLAPFDC  240 (265)
Q Consensus       181 ~~~~~-----~-------~-----~~~~di~~~s~sK~~~g~~g~~~G~v~~---~~~~~~~~~~~~~~~~~~~~~~~~~  240 (265)
                      ..+..     +       .     ..+..+++.||||.+.+.+|+|+||++.   +.+.+ +.....+.. ....+...+
T Consensus       255 l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li-~~~~~~~~~-~~~~~~~~Q  332 (407)
T PLN02368        255 NIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTV-EEIYKVASI-ALSPNVSGQ  332 (407)
T ss_pred             cccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHH-HHHHHHhcc-cCCCCcHHH
Confidence            44311     1       0     1236799999999986678999999985   44443 433333322 233444444


Q ss_pred             HHHHhcc
Q 024619          241 WICLRGV  247 (265)
Q Consensus       241 ~~~~~~l  247 (265)
                      ..+...+
T Consensus       333 ~aa~~~l  339 (407)
T PLN02368        333 IFMGLMV  339 (407)
T ss_pred             HHHHHHh
Confidence            4444444

>PRK08636 aspartate aminotransferase; Provisional

Probab=99.93  E-value=5.9e-24  Score=188.37  Aligned_cols=203  Identities=17%  Similarity=0.189  Sum_probs=145.7

Q ss_pred             eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCCC---c-eEEecchH-HHH
Q 024619           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKAD---R-ALCFTSGM-AAL   83 (265)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~-~i~~~~g~-~al   83 (265)
                      ..+++|+ ..+.....++..+.+....   ......+.|++. |.+ +++++++++.+.+|.+   + .+++++|+ +++
T Consensus        33 ~~~~~l~-~g~p~~~~~~~~~~~~~~~---~~~~~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al  108 (403)
T PRK08636         33 EDIIDFS-MGNPDGPTPQHIIDKLCES---AQKPKTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGY  108 (403)
T ss_pred             CCEEEcC-CcCCCCCCCHHHHHHHHHH---hcCCccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHHH
Confidence            4578888 4444444333333332211   111235778887 886 5999999998887642   3 57777776 888


Q ss_pred             H-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-------CHH----HHHhhcC---CCceEEEEecC
Q 024619           84 A-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLD----EVASAIG---PWTKLVWVESP  148 (265)
Q Consensus        84 ~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~----~l~~~~~---~~~~~i~~~~~  148 (265)
                      . ++..++++||.|++++|+|+.+.    ..++..|.+++.++.+       |++    .++++++   ++++++++++|
T Consensus       109 ~~~~~~l~~~gd~Vlv~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P  184 (403)
T PRK08636        109 VHLVQAITNPGDVAIVPDPAYPIHS----QAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVVNFP  184 (403)
T ss_pred             HHHHHHhCCCCCEEEEcCCCCcchH----HHHHhcCCEEEEEeccccccCccChhhhhhHHHHHHhhccCCceEEEEeCC
Confidence            6 67788999999999999999996    4557788998887652       344    3455553   57899999999


Q ss_pred             CCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc-----CCCC----CCccEEEeccccccccCCCceeeEEEee
Q 024619          149 TNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLE----LGADIVMHSATKFIAGHSDVMAGVLAVK  216 (265)
Q Consensus       149 ~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~~~----~~~di~~~s~sK~~~g~~g~~~G~v~~~  216 (265)
                      +||||.+++   +++|+++|++|+++||+||+|+...+.     ....    .+..++++|+||.+ |.+|+|+||++.+
T Consensus       185 ~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~GlRiG~iv~~  263 (403)
T PRK08636        185 HNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSY-NMAGWRVGFVVGN  263 (403)
T ss_pred             CCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEeccccc-CCccceeeeeeCC
Confidence            999999976   588999999999999999999743321     1111    13457789999999 6688999999887


Q ss_pred             chhHHH
Q 024619          217 GERLAK  222 (265)
Q Consensus       217 ~~~~~~  222 (265)
                      ++.+..
T Consensus       264 ~~li~~  269 (403)
T PRK08636        264 KKLVGA  269 (403)
T ss_pred             HHHHHH
Confidence            655433

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.93  E-value=6.4e-24  Score=189.26  Aligned_cols=166  Identities=20%  Similarity=0.204  Sum_probs=132.0

Q ss_pred             CCccCCC-CCh-hHHHHHHHHHhHhCC----CceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC
Q 024619           46 PYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (265)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g  118 (265)
                      ...|++. |.+ +++++++++.+.+|.    +++++++++++++. ++..+.++||+|++++|+|+.+.    ..+...|
T Consensus        87 ~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al~l~~~~l~~~Gd~Vlv~~P~y~~y~----~~~~~~g  162 (430)
T PLN00145         87 YNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEIIMSVLAQPGANILLPRPGYPLYE----ARAVFSG  162 (430)
T ss_pred             CCCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCCCccHH----HHHHHcC
Confidence            4578877 776 588888888776553    34555555569996 66777899999999999999986    4456678


Q ss_pred             eEEEeecC-------CCHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc----
Q 024619          119 VVVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----  184 (265)
Q Consensus       119 ~~~~~~~~-------~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~----  184 (265)
                      .+++.+++       .|++++++.+.++++++++++|+||||.+.+   +++|+++|+++|++||+||+|+...+.    
T Consensus       163 ~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~  242 (430)
T PLN00145        163 LEVRHFDLLPERGWEVDLEGVEALADENTVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPF  242 (430)
T ss_pred             CEEEEeeCCcccCCcCCHHHHHHHhCcCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCc
Confidence            88888764       2789999988889999999999999999987   789999999999999999999754332    


Q ss_pred             CC----CCCCccEEEeccccccccCCCceeeEEEee
Q 024619          185 RP----LELGADIVMHSATKFIAGHSDVMAGVLAVK  216 (265)
Q Consensus       185 ~~----~~~~~di~~~s~sK~~~g~~g~~~G~v~~~  216 (265)
                      .+    ......++++|+||.| +.+|+|.||++..
T Consensus       243 ~~~~~~~~~~~vi~~~S~SK~~-~~pG~RlG~iv~~  277 (430)
T PLN00145        243 VPMGVFGEVAPVLTLGSISKRW-VVPGWRLGWIATC  277 (430)
T ss_pred             cchhhhcccCcEEEEecccccc-CCCCeeEEEEEEe
Confidence            11    1224679999999999 6789999999874

>PRK09082 methionine aminotransferase; Validated

Probab=99.92  E-value=1.9e-24  Score=190.42  Aligned_cols=190  Identities=21%  Similarity=0.243  Sum_probs=145.0

Q ss_pred             CCccCCC-CCh-hHHHHHHHHHhHhCCC----ceEEecch-HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCC
Q 024619           46 PYDYTRS-GNP-TRDALESLLAKLDKAD----RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (265)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~~----~~i~~~~g-~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~  117 (265)
                      ...|.+. |.+ +++++++++.+++|.+    +.+++++| ++++. ++..++++||+|++++|+|+.+.    ..++..
T Consensus        60 ~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~Vli~~p~y~~~~----~~~~~~  135 (386)
T PRK09082         60 HNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFAAILALVRPGDEVIVFDPSYDSYA----PAIELA  135 (386)
T ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhhH----HHHHHc
Confidence            4568766 776 5999999999988763    24656555 58886 67778999999999999999986    444567


Q ss_pred             CeEEEeecCC------CHHHHHhhcCCCceEEEEecCCCCccccc---cHHHHHHHHHHcCCEEEEeCCcCCCCCc----
Q 024619          118 GVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQIC---DIRKIAEMAHAHGALLLVDNSIMSPVLS----  184 (265)
Q Consensus       118 g~~~~~~~~~------d~~~l~~~~~~~~~~i~~~~~~np~G~~~---~l~~i~~~a~~~~~~li~D~~~~~~~~~----  184 (265)
                      |.+++.++.+      |++++++.+.+++++|++++|+||||.+.   ++++|+++|+++|+++|+||+|+...+.    
T Consensus       136 g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~  215 (386)
T PRK09082        136 GGRAVRVALQPPDFRVDWQRFAAAISPRTRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGH  215 (386)
T ss_pred             CCEEEEEecCcccccCCHHHHHHhcCccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCC
Confidence            8898888864      78999999988899999999999999884   6899999999999999999999643321    


Q ss_pred             -C----CCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHH
Q 024619          185 -R----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCW  241 (265)
Q Consensus       185 -~----~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (265)
                       .    ....+.+++++||||.+ |.+|+|+|+++++++.+ ..+...........+...+.
T Consensus       216 ~s~~~~~~~~~~~i~~~S~SK~~-~~~G~RiG~iv~~~~l~-~~~~~~~~~~~~~~~~~~q~  275 (386)
T PRK09082        216 ASVLRHPELRERAFVVSSFGKTY-HVTGWKVGYCVAPAALS-AEFRKVHQYNTFTVNTPAQL  275 (386)
T ss_pred             CChhhCcCccCcEEEEeechhhc-cchhhhhhhhhCCHHHH-HHHHHHHhhhcCCCChHHHH
Confidence             1    11135679999999999 67889999999876544 44444444333444544433

>PRK07682 hypothetical protein; Validated

Probab=99.92  E-value=3.9e-24  Score=188.04  Aligned_cols=196  Identities=18%  Similarity=0.203  Sum_probs=144.7

Q ss_pred             CCccCCC-CCh-hHHHHHHHHHhHhCC----CceEEecch-HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCC
Q 024619           46 PYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (265)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~g-~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~  117 (265)
                      ...|++. |.+ +++++.+++.+.+|.    ++.+++++| ++|+. ++..++++||+|++++|+|+.+.    ..++..
T Consensus        50 ~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~----~~~~~~  125 (378)
T PRK07682         50 YTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMRAIINPGDEVLIVEPSFVSYA----PLVTLA  125 (378)
T ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhCCCCCEEEEeCCCchhhH----HHHHHc
Confidence            4568765 776 599999999887664    334555555 58886 66778999999999999999886    444556


Q ss_pred             CeEEEeecC-------CCHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCcC--
Q 024619          118 GVVVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR--  185 (265)
Q Consensus       118 g~~~~~~~~-------~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~~--  185 (265)
                      |.+++.++.       .|++++++++.+++++|++++|+||||.+.+   +++|+++|++|++++|+||+|+...+..  
T Consensus       126 g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~  205 (378)
T PRK07682        126 GGVPVPVATTLENEFKVQPAQIEAAITAKTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAY  205 (378)
T ss_pred             CCEEEEeecCCccCCCCCHHHHHhhcCcccEEEEEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCC
Confidence            778777764       2689999988888999999999999999965   7899999999999999999998544321  


Q ss_pred             ------CCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhcc
Q 024619          186 ------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV  247 (265)
Q Consensus       186 ------~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  247 (265)
                            ....+.++++.|+||.+ +.+|+|.||++++++.+ +.+...........+...+..+.+.|
T Consensus       206 ~~~~~~~~~~~~~i~~~S~SK~~-~~~GlR~G~~~~~~~~i-~~l~~~~~~~~~~~~~~~q~a~~~~l  271 (378)
T PRK07682        206 TSFASIKGMRERTILISGFSKGF-AMTGWRLGFIAAPVYFS-EAMLKIHQYSMMCAPTMAQFAALEAL  271 (378)
T ss_pred             CChhhcccccCCEEEEecCcccc-cChhhhhhhhhcCHHHH-HHHHHHHHhhccCCCHHHHHHHHHHH
Confidence                  11124689999999999 66789999999877544 43433343333344444444433333

>PRK09148 aminotransferase; Validated

Probab=99.92  E-value=7.3e-24  Score=187.79  Aligned_cols=191  Identities=18%  Similarity=0.165  Sum_probs=139.0

Q ss_pred             CCccCCC-CCh-hHHHHHHHHHhHhCC----CceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCC
Q 024619           46 PYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (265)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~  117 (265)
                      .+.|++. |.+ +++++++++.+.+|.    ++.+++++|+ +++. ++..++++||+|++++|+|+.+.    ..++..
T Consensus        61 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~----~~~~~~  136 (405)
T PRK09148         61 THRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFANMAQAITAPGDVILCPNPSYPIHA----FGFIMA  136 (405)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCCcccH----HHHHhc
Confidence            4678887 786 599999999887664    3256677665 8886 66778899999999999999986    344667


Q ss_pred             CeEEEeecCC----CHHHHHhh---cCCCceEEEEecCCCCccccccH---HHHHHHHHHcCCEEEEeCCcCCCCCc---
Q 024619          118 GVVVKRVNTC----DLDEVASA---IGPWTKLVWVESPTNPRQQICDI---RKIAEMAHAHGALLLVDNSIMSPVLS---  184 (265)
Q Consensus       118 g~~~~~~~~~----d~~~l~~~---~~~~~~~i~~~~~~np~G~~~~l---~~i~~~a~~~~~~li~D~~~~~~~~~---  184 (265)
                      |++++.++.+    ..+++++.   ..++++++++++|+||||.+.+.   ++|+++|+++|++||+||+|+...+.   
T Consensus       137 g~~v~~v~~~~~~~~~~~l~~~~~~~~~~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~  216 (405)
T PRK09148        137 GGVIRSVPAEPDEEFFPALERAVRHSIPKPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNP  216 (405)
T ss_pred             CCEEEEEeCCCCCCCccCHHHHHhhccccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCC
Confidence            9999888753    22333333   34678999999999999999874   78999999999999999999743221   


Q ss_pred             --CCC----CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHH
Q 024619          185 --RPL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI  242 (265)
Q Consensus       185 --~~~----~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (265)
                        ...    ..+..+++.||||.+ |.+|+|+||++++++.+ +.+...+.......+...+..
T Consensus       217 ~~s~~~~~~~~~~~i~~~SfSK~~-~~pGlR~G~~v~~~~~i-~~l~~~~~~~~~~~~~~~q~~  278 (405)
T PRK09148        217 PPSVLQVPGAKDVTVEFTSMSKTF-SMAGWRMGFAVGNERLI-AALTRVKSYLDYGAFTPIQVA  278 (405)
T ss_pred             CCChhhCCCccCcEEEEecccccc-CCcchheeeeeCCHHHH-HHHHHHHHHhccCCChHHHHH
Confidence              111    123467899999999 67789999998766544 444455443333444444333

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.92  E-value=8.6e-24  Score=187.52  Aligned_cols=201  Identities=19%  Similarity=0.175  Sum_probs=146.4

Q ss_pred             cceeEeeccCCCCCC--CCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCC--C-ceEEecchH-
Q 024619            9 VSTLLMNFSNEFDPY--GALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKA--D-RALCFTSGM-   80 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~--~-~~i~~~~g~-   80 (265)
                      ....+|+|+ ..++.  +..++|......+.. .........|++. |.+ +++++++++.+.+|.  + +.+++++|+ 
T Consensus        30 ~~~~~i~l~-~G~p~~~~~~~~p~~~~~a~~~-~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~I~it~G~~  107 (409)
T PLN00143         30 DHRLAISFG-FGDPSCFECFRTTNIAEDAIVE-AVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTLGCK  107 (409)
T ss_pred             CCCceeeCC-CCCCCCCCCCCCCHHHHHHHHH-HHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHhhEEEecChH
Confidence            345688888 55553  333333322221111 1111234568766 886 599999999887643  2 455566665 


Q ss_pred             HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC-------CCHHHHHhhcCCCceEEEEecCCCCc
Q 024619           81 AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPR  152 (265)
Q Consensus        81 ~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~~~~~~~~i~~~~~~np~  152 (265)
                      +++. ++..++++||.|++++|+|+.+.    ..++..|.+++.+++       .|++++++++.++++++++++|||||
T Consensus       108 ~al~~~~~~l~~~gd~v~v~~P~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~nP~NPT  183 (409)
T PLN00143        108 HAAEIIIKVLARPEANILLPRPGFPDVE----TYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIADENTIAMVIINPGNPC  183 (409)
T ss_pred             HHHHHHHHHHcCCCCEEEEcCCCCcCHH----HHHHHcCCEEEEEeccCCCCCcCCHHHHHHhcccCCEEEEEECCCCCC
Confidence            8886 67778999999999999999996    455677888888864       27899998888889999999999999


Q ss_pred             ccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc----CC----CCCCccEEEeccccccccCCCceeeEEEee
Q 024619          153 QQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----RP----LELGADIVMHSATKFIAGHSDVMAGVLAVK  216 (265)
Q Consensus       153 G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~----~~----~~~~~di~~~s~sK~~~g~~g~~~G~v~~~  216 (265)
                      |.+.+   +++|+++|++++++||+||+|....+.    .+    ...+..+++.||||.| +.+|+|.||++++
T Consensus       184 G~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f-~~pGlRvG~~v~~  257 (409)
T PLN00143        184 GSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRW-MIPGWGLGWLVTC  257 (409)
T ss_pred             CCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccCcEEEEccchhhc-CCCccceEEEEee
Confidence            99976   788999999999999999999754321    11    1123569999999998 5688999999984

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=99.92  E-value=6.4e-24  Score=187.57  Aligned_cols=221  Identities=21%  Similarity=0.285  Sum_probs=155.8

Q ss_pred             ceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCC----C--ceEEecchH-
Q 024619           10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKA----D--RALCFTSGM-   80 (265)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~----~--~~i~~~~g~-   80 (265)
                      +..+++|+ .++..- .+++.+.... ... .  .....|++. |.+ +++++++++.+.+|.    +  +.+++++|+ 
T Consensus        27 ~~~~i~l~-~~~p~~-~~~~~~~~a~-~~~-~--~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~  100 (393)
T TIGR03538        27 SKPPIALS-IGEPKH-PTPAFVLEAL-REN-L--HGLSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTR  100 (393)
T ss_pred             CCCeEEec-CCCCCC-CCCHHHHHHH-HHH-h--hccCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcH
Confidence            35678888 444321 1233333322 111 1  134668877 776 599999999887542    2  357777775 


Q ss_pred             HHHH-HHHHhcCCCCE--EEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-------CHHHHHhhcCCCceEEEEecCCC
Q 024619           81 AALA-AVTHLLGTGEE--IVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTN  150 (265)
Q Consensus        81 ~al~-~~~~~~~~g~~--viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~~~~~~~~i~~~~~~n  150 (265)
                      +++. ++..++++||.  |++++|+|+.+.    ..++..|.+++.++++       |++++++++.+++++|++++|+|
T Consensus       101 ~al~~~~~~l~~~gd~~~vlv~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~N  176 (393)
T TIGR03538       101 EALFAFAQAVINPGQAPLVVMPNPFYQIYE----GAALLAGAEPYFLNCTAENGFLPDFDAVPESVWRRCQLLFVCSPGN  176 (393)
T ss_pred             HHHHHHHHHHcCCCCcceEEecCCCCcchH----HHHHhcCCeEEEeeccccCCCCCCHHHHHHHHhhcceEEEEeCCCC
Confidence            8886 66778999986  899999999986    4557788899888752       67888888777899999999999


Q ss_pred             Ccccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCcC---C---------C---CCCccEEEeccccccccCCCceeeE
Q 024619          151 PRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR---P---------L---ELGADIVMHSATKFIAGHSDVMAGV  212 (265)
Q Consensus       151 p~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~~---~---------~---~~~~di~~~s~sK~~~g~~g~~~G~  212 (265)
                      |||.+.+   +++|+++|+++|++||+||+|....+..   +         .   ..+..+++.|+||.+ +.+|+|+||
T Consensus       177 PtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~-~~~GlRvG~  255 (393)
T TIGR03538       177 PTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRS-NLPGLRSGF  255 (393)
T ss_pred             CcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhc-CCcccceEE
Confidence            9999976   7899999999999999999997433210   0         0   124569999999988 667899999


Q ss_pred             EEeechhHHHHHHHHHHhccCCCChhHHHH
Q 024619          213 LAVKGERLAKELYFLQNAEGSGLAPFDCWI  242 (265)
Q Consensus       213 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (265)
                      ++++++.+ +.+...+.......+...+..
T Consensus       256 ~i~~~~l~-~~~~~~~~~~~~~~~~~~q~~  284 (393)
T TIGR03538       256 VAGDAEIL-KAFLRYRTYHGCAMPIPTQLA  284 (393)
T ss_pred             EecCHHHH-HHHHHHHHhhccCcCHHHHHH
Confidence            98876554 334444443344445444443

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK07550 hypothetical protein; Provisional

Probab=99.92  E-value=1e-23  Score=185.84  Aligned_cols=197  Identities=18%  Similarity=0.217  Sum_probs=146.6

Q ss_pred             CCccCCC-CChh-HHHHHHHHHhHhCCC---ceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC
Q 024619           46 PYDYTRS-GNPT-RDALESLLAKLDKAD---RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (265)
Q Consensus        46 ~~~y~~~-g~~~-~~~l~~~l~~~~g~~---~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g  118 (265)
                      ...|++. |.+. ++++++++.+.+|..   +.+++++|+ +++. ++..++++||+|++++|+|+.+.    ..++..|
T Consensus        60 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g  135 (386)
T PRK07550         60 AHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMVTLAGAGDEVILPLPWYFNHK----MWLDMLG  135 (386)
T ss_pred             CcCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhcCCCCEEEEcCCCCcchH----HHHHhcC
Confidence            4568776 8875 899999999887643   466666664 8886 66677899999999999998886    4457789


Q ss_pred             eEEEeecCC-------CHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc----
Q 024619          119 VVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----  184 (265)
Q Consensus       119 ~~~~~~~~~-------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~----  184 (265)
                      .+++.++.+       |++++++.+.+++++|++++|+||||.+.+   +++|+++|+++|++||+||+|+.....    
T Consensus       136 ~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~  215 (386)
T PRK07550        136 IRPVYLPCDEGPGLLPDPAAAEALITPRTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAP  215 (386)
T ss_pred             CEEEEEecCCCcCCCCCHHHHHHHhcccCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCC
Confidence            999988863       678899988888999999999999999976   789999999999999999998643211    


Q ss_pred             -CCC---C-CCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619          185 -RPL---E-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       185 -~~~---~-~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                       ...   + .+..+++.|+||.+ |.+|+|+|+++++++.+.. ............+...+..+.+.++
T Consensus       216 ~~~~~~~~~~~~~i~~~S~SK~~-g~~G~RiG~i~~~~~~~~~-~~~~~~~~~~~~s~~~q~~~~~~l~  282 (386)
T PRK07550        216 HDLFADPDWDDTLVHLYSFSKSY-ALTGHRVGAVVASPARIAE-IEKFMDTVAICAPRIGQIAVAWGLP  282 (386)
T ss_pred             cchhhCCCccccEEEEecchhhc-cCcccceEeeecCHHHHHH-HHHHHhhcccCCCcHHHHHHHHHhc
Confidence             111   1 23468899999999 6678999999987755434 3334333334445444444444333

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=99.92  E-value=4.4e-24  Score=194.55  Aligned_cols=197  Identities=18%  Similarity=0.222  Sum_probs=143.9

Q ss_pred             eeEeeccCCC-CCCCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCC--C-ceEEecchH-HHH
Q 024619           11 TLLMNFSNEF-DPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKA--D-RALCFTSGM-AAL   83 (265)
Q Consensus        11 ~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~--~-~~i~~~~g~-~al   83 (265)
                      ..+++|+.++ +.++..+|+.+........  .  ....|++. |.+ +++++.+++.+..+.  + +.|++++|+ +++
T Consensus       146 ~~~i~l~~G~p~~~~~~~p~~~~~~~~~~~--~--~~~~Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal  221 (517)
T PRK13355        146 THILKLNIGNPAPFGFRTPDEVVYDMAQQL--T--DTEGYSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELI  221 (517)
T ss_pred             CCeEEecCcCCCcCCCCCCHHHHHHHHHHh--h--cCCCCCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHH
Confidence            4678888323 3334333333322221111  1  23468887 775 589999988766532  2 466666665 888


Q ss_pred             H-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC-------CCHHHHHhhcCCCceEEEEecCCCCcccc
Q 024619           84 A-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPRQQI  155 (265)
Q Consensus        84 ~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~~~~~~~~i~~~~~~np~G~~  155 (265)
                      . ++..++++||+|++++|+|+.+.    ..++..|.+++.++.       .|++++++++.+++++|++++|+||||.+
T Consensus       222 ~~~~~~l~~~Gd~Vli~~P~y~~y~----~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~k~i~i~nP~NPTG~v  297 (517)
T PRK13355        222 NLSMSALLDDGDEVLIPSPDYPLWT----ACVNLAGGTAVHYRCDEQSEWYPDIDDIRSKITSRTKAIVIINPNNPTGAL  297 (517)
T ss_pred             HHHHHHhCCCCCEEEEcCCCCcCHH----HHHHHCCCEEEEeecCcccCCCCCHHHHHHhcCcCceEEEEECCCCCCCcC
Confidence            6 67788999999999999999997    455677888888764       37899999998899999999999999999


Q ss_pred             cc---HHHHHHHHHHcCCEEEEeCCcCCCCCc-----CCCCC--C-ccEEEeccccccccCCCceeeEEEee
Q 024619          156 CD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLEL--G-ADIVMHSATKFIAGHSDVMAGVLAVK  216 (265)
Q Consensus       156 ~~---l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~~~~--~-~di~~~s~sK~~~g~~g~~~G~v~~~  216 (265)
                      .+   +++|+++|++||++||+||+|..-.+.     .....  + ..+++.||||.+ +.+|+|+||++.+
T Consensus       298 ~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~~~~vi~~~S~SK~~-~~~G~RiG~~i~~  368 (517)
T PRK13355        298 YPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAPDLFCVTFSGLSKSH-MIAGYRIGWMILS  368 (517)
T ss_pred             cCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCCCCeEEEEecchhhc-cCcccceEEEEee
Confidence            87   899999999999999999999743321     11111  1 346679999999 6789999999864

>PLN02955 8-amino-7-oxononanoate synthase

Probab=99.92  E-value=5.1e-24  Score=188.01  Aligned_cols=245  Identities=18%  Similarity=0.124  Sum_probs=172.5

Q ss_pred             ceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC--CC-hhHHHHHHHHHhHhCCCceEEecchHHHH-HH
Q 024619           10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS--GN-PTRDALESLLAKLDKADRALCFTSGMAAL-AA   85 (265)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~--g~-~~~~~l~~~l~~~~g~~~~i~~~~g~~al-~~   85 (265)
                      ...+++|+ +|||+|+..+|.+............ .+..-++.  |+ ...+++|+.+++++|.++++++++|..|. .+
T Consensus       101 ~r~~l~Fs-SndYLGL~~~p~v~~a~~~ai~~yG-~g~~gSrl~~G~~~~h~~LE~~LA~f~g~e~all~sSGy~AN~~~  178 (476)
T PLN02955        101 FKKLLLFS-GNDYLGLSSHPTISNAAANAAKEYG-MGPKGSALICGYTTYHRLLESSLADLKKKEDCLVCPTGFAANMAA  178 (476)
T ss_pred             CceEEEee-ccCccCCCCCHHHHHHHHHHHHHcC-CCCCCcCccccChHHHHHHHHHHHHHHCCCcEEEECChHHHHHHH
Confidence            45799999 9999999999988876533322121 22233333  66 45899999999999999999999999665 45


Q ss_pred             HHHh--------------cCCCCEEEEcCCCCCChHHHHHhhcCCC-CeEEEeecCCCHHHHHhhcC---CCceEEEEec
Q 024619           86 VTHL--------------LGTGEEIVAGDDLYGGTDRLLSRVTPKT-GVVVKRVNTCDLDEVASAIG---PWTKLVWVES  147 (265)
Q Consensus        86 ~~~~--------------~~~g~~viv~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~d~~~l~~~~~---~~~~~i~~~~  147 (265)
                      +..+              ..+++.|+.+...|.+..... ..++.. +.++..++..|++++++.+.   .+.++|++++
T Consensus       179 i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~-~ls~~~~~a~~~~f~HND~~~Le~~L~~~~~~~~~Vv~Eg  257 (476)
T PLN02955        179 MVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGV-RLAERQGNVEVFVYRHCDMYHLNSLLSSCKMKRKVVVTDS  257 (476)
T ss_pred             HHHHhhccccccccccccCCCCcEEEEeccchHHHHHHH-HhccccCCceEEEeCCCCHHHHHHHHHhCCCCceEEEEeC
Confidence            5444              245667888888888877555 233333 57888889999999988874   3467889999


Q ss_pred             CCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcC---------CCCCCccEEEeccccccccCCCceeeEEEeech
Q 024619          148 PTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR---------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGE  218 (265)
Q Consensus       148 ~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~---------~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~  218 (265)
                      ..++.|.+.|+++|.++|++||+++|+||+|+.|.++.         ....+.||+++||+|.+++    ++|+++++++
T Consensus       258 V~SmdGdiapL~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~G~----~GGfi~gs~~  333 (476)
T PLN02955        258 LFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLSKAAGC----HGGFIACSKK  333 (476)
T ss_pred             CCCCCCCcCCHHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhCCCCCCcEEEEeCccchhc----cCceeecHHH
Confidence            99999999999999999999999999999999877652         1123678999999999853    3688888764


Q ss_pred             hHHHHHHHHHH--hccCCCChhHHHHHHhccC---chHhhHHHHhhchh
Q 024619          219 RLAKELYFLQN--AEGSGLAPFDCWICLRGVK---TMALRVEKQQVCFF  262 (265)
Q Consensus       219 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~  262 (265)
                       +.+.+.....  .....+++..+...+.+++   +...+..++++|.+
T Consensus       334 -~~~~l~~~~~~~ifStalpp~~aaa~laal~l~~~~~~~r~~L~~n~~  381 (476)
T PLN02955        334 -WKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVARKEKWRRKAIWERVK  381 (476)
T ss_pred             -HHHHHHHhCCCCeecccccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence             3343332222  2233445444444444333   22344555555544

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=4.4e-24  Score=187.33  Aligned_cols=166  Identities=33%  Similarity=0.431  Sum_probs=148.3

Q ss_pred             hHHHHHHHHHhHhCCC--ceEEecchH-HHHH-HHHHh---cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-
Q 024619           56 TRDALESLLAKLDKAD--RALCFTSGM-AALA-AVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-  127 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~~i~~~~g~-~al~-~~~~~---~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-  127 (265)
                      ..++.++.+++++|++  +.|+++.|+ +++. +..++   ..+||+|++++-.|++....|..++++.|++++.++.+ 
T Consensus        67 ~~e~aRe~va~~~~a~~~~eIvft~~tT~aln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~~  146 (405)
T COG0520          67 LYEAAREAVARFLNADSSDEIVFTRGTTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDD  146 (405)
T ss_pred             HHHHHHHHHHHHhCCCCCCeEEEeCChhHHHHHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecCC
Confidence            4788999999999987  577777776 8887 44555   68999999999999999999999999999999999864 


Q ss_pred             ----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEecccccc
Q 024619          128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI  202 (265)
Q Consensus       128 ----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~~  202 (265)
                          +.+++++.++++|++|.+++.+|.||.+.|+++|+++||++|+++++|.+|+.+..+ +..+.++|++++|.+||+
T Consensus       147 ~g~~~~~~~~~~i~~~Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq~~~h~~idv~~l~~Df~afsgHKwl  226 (405)
T COG0520         147 DGLLDLDALEKLITPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQELGCDFLAFSGHKWL  226 (405)
T ss_pred             CCCcCHHHHHHhcCCCceEEEEECccccccccchHHHHHHHHHHcCCEEEEECccccCccCCCchhcCCCEEEEcccccc
Confidence                689999999999999999999999999999999999999999999999999999987 456779999999999999


Q ss_pred             ccCCCceeeEEEeechhHHHH
Q 024619          203 AGHSDVMAGVLAVKGERLAKE  223 (265)
Q Consensus       203 ~g~~g~~~G~v~~~~~~~~~~  223 (265)
                      .||.|  +|+++++++.+.++
T Consensus       227 ~gP~G--iGvLy~r~~~l~~l  245 (405)
T COG0520         227 LGPTG--IGVLYVRKELLEEL  245 (405)
T ss_pred             cCCCc--eEEEEEchHHHhhc
Confidence            99988  59999999776553

>PRK08361 aspartate aminotransferase; Provisional

Probab=99.92  E-value=7.6e-24  Score=186.96  Aligned_cols=191  Identities=19%  Similarity=0.209  Sum_probs=143.0

Q ss_pred             CCccCCC-CCh-hHHHHHHHHHhHhCC----CceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC
Q 024619           46 PYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (265)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g  118 (265)
                      ...|.+. |.+ +++++++++.+.+|.    +++++++++++++. ++..++++||.|++++|+|..+.    ..++..|
T Consensus        63 ~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~g~~Vlv~~p~y~~~~----~~~~~~g  138 (391)
T PRK08361         63 WTHYTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLLEEGDEVIIPDPAFVCYV----EDAKIAE  138 (391)
T ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCCcccH----HHHHHcC
Confidence            4557665 776 588888888877653    24445544568886 66778899999999999999986    4456678


Q ss_pred             eEEEeecC-------CCHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc----
Q 024619          119 VVVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----  184 (265)
Q Consensus       119 ~~~~~~~~-------~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~----  184 (265)
                      .+++.+++       .|++++++.+.++++++++++|+||||.+.+   +++|+++|+++++++|+||+|+...+.    
T Consensus       139 ~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~  218 (391)
T PRK08361        139 AKPIRIPLREENEFQPDPDELLELITKRTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKH  218 (391)
T ss_pred             CEEEEEecCCccCCCCCHHHHHHhcccccEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCC
Confidence            88888865       3789999999888999999999999999988   889999999999999999999754321    


Q ss_pred             -CC--CCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHH
Q 024619          185 -RP--LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI  242 (265)
Q Consensus       185 -~~--~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (265)
                       ..  ...+.++++.|+||.+ |.+|+|+|+++++++.+.. ............+...+..
T Consensus       219 ~~~~~~~~~~~i~~~s~SK~~-~~~GlRiG~~~~~~~~~~~-~~~~~~~~~~~~~~~~q~~  277 (391)
T PRK08361        219 YPMIKYAPDNTILANSFSKTF-AMTGWRLGFVIAPEQVIKD-MIKLHAYIIGNVASFVQIA  277 (391)
T ss_pred             CCHhhcCCCCEEEEecCchhc-CCcHhhhhhhccCHHHHHH-HHHHHhhhccCCChHHHHH
Confidence             11  1235689999999999 6679999999987755543 3333333333444444333

>PRK07777 aminotransferase; Validated

Probab=99.92  E-value=1.5e-23  Score=184.79  Aligned_cols=170  Identities=25%  Similarity=0.314  Sum_probs=133.5

Q ss_pred             CCccCCC-CCh-hHHHHHHHHHhHhCCC----ceEEecch-HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCC
Q 024619           46 PYDYTRS-GNP-TRDALESLLAKLDKAD----RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (265)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~~----~~i~~~~g-~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~  117 (265)
                      ...|++. |.+ +++++++++.+.+|.+    +.+++++| ++++. ++..++++||+|++..|+|+.+.    ..++..
T Consensus        54 ~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~vli~~p~y~~~~----~~~~~~  129 (387)
T PRK07777         54 VNQYPPGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVLGLVEPGDEVLLIEPYYDSYA----AVIAMA  129 (387)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhH----HHHHHC
Confidence            4568876 776 5888999988887753    23555555 68886 67778899999999999999886    444566


Q ss_pred             CeEEEeecC--------CCHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc--
Q 024619          118 GVVVKRVNT--------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS--  184 (265)
Q Consensus       118 g~~~~~~~~--------~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~--  184 (265)
                      |.+++.++.        .|++++++.+.+++++|++++|+||||.+.+   +++|+++|+++++++|+||+|+...+.  
T Consensus       130 g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~  209 (387)
T PRK07777        130 GAHRVPVPLVPDGRGFALDLDALRAAVTPRTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGA  209 (387)
T ss_pred             CCEEEEeecCCccCCCcCCHHHHHHhcCcccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCC
Confidence            777777754        3689999988888999999999999999964   789999999999999999999743321  


Q ss_pred             ------C-CCCCCccEEEeccccccccCCCceeeEEEeechhH
Q 024619          185 ------R-PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       185 ------~-~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                            . +...+.++++.|+||.+ |.+|+|+|+++.+++.+
T Consensus       210 ~~~~~~~~~~~~~~~i~~~S~SK~~-g~~GlRiG~~~~~~~l~  251 (387)
T PRK07777        210 RHLPLATLPGMRERTVTISSAAKTF-NVTGWKIGWACGPAPLI  251 (387)
T ss_pred             CcccHhhCCCCcCcEEEEeechhhc-cCcCceeEEEecCHHHH
Confidence                  0 11134789999999999 66799999998877544

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=99.92  E-value=5.4e-24  Score=190.15  Aligned_cols=194  Identities=13%  Similarity=0.116  Sum_probs=143.5

Q ss_pred             CccCCC-CCh-hHHHHHHHHHhHhCCCceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEE
Q 024619           47 YDYTRS-GNP-TRDALESLLAKLDKADRALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVK  122 (265)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~~l~~~~g~~~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~  122 (265)
                      ..|++. |.+ +++.+.+++.+..+.++.+++++|+ +++. ++..++++||.|++++|+|+.+.    ..++..|++++
T Consensus       115 ~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~Iiit~G~~~al~~~~~~l~~pgd~Vlv~~P~y~~~~----~~~~~~g~~~~  190 (431)
T PRK15481        115 RLYGDAPVSPELHAWAARWLRDDCPVAFEIDLTSGAIDAIERLLCAHLLPGDSVAVEDPCFLSSI----NMLRYAGFSAS  190 (431)
T ss_pred             hhcCCcCCCHHHHHHHHHHHhhccCCcCeEEEecCcHHHHHHHHHHhCCCCCEEEEeCCCcHHHH----HHHHHcCCeEE
Confidence            467776 764 5777877776655555466666665 8886 67788999999999999999997    55677899999


Q ss_pred             eecCC----CHHHHHhhcCCCceEEEEe-cCCCCccccccH---HHHHHHHHHc-CCEEEEeCCcCCCCC---cCCC--C
Q 024619          123 RVNTC----DLDEVASAIGPWTKLVWVE-SPTNPRQQICDI---RKIAEMAHAH-GALLLVDNSIMSPVL---SRPL--E  188 (265)
Q Consensus       123 ~~~~~----d~~~l~~~~~~~~~~i~~~-~~~np~G~~~~l---~~i~~~a~~~-~~~li~D~~~~~~~~---~~~~--~  188 (265)
                      .++++    |++++++++.+++++++++ +||||||.+.+.   ++|.++|+++ +++||+||+|+....   ....  .
T Consensus       191 ~v~~~~~g~~~~~l~~~~~~~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~~~  270 (431)
T PRK15481        191 PVSVDAEGMQPEKLERALAQGARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSVIPQT  270 (431)
T ss_pred             eeccCCCCCCHHHHHHHHhcCCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCCCcCC
Confidence            98864    6889998887788988886 999999999886   5999999999 999999999974321   1111  2


Q ss_pred             CCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhcc
Q 024619          189 LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV  247 (265)
Q Consensus       189 ~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  247 (265)
                      .+..++++||||.+ + +|+|.||++.+++.+.. +...........+...+.++...|
T Consensus       271 ~~~vi~~~SfSK~~-~-~GlRiG~~i~~~~~~~~-~~~~~~~~~~~~s~~~q~a~~~~l  326 (431)
T PRK15481        271 TQRWALIRSVSKAL-G-PDLRLAFVASDSATSAR-LRLRLNSGTQWVSHLLQDLVYACL  326 (431)
T ss_pred             CCCEEEEeeecccc-C-CCceeEEEeCCHHHHHH-HHHHHhccccCCCHHHHHHHHHHH
Confidence            34679999999999 5 69999999987654433 333333333345555544444433

>PRK06855 aminotransferase; Validated

Probab=99.92  E-value=2.8e-23  Score=185.40  Aligned_cols=168  Identities=20%  Similarity=0.296  Sum_probs=129.1

Q ss_pred             CCCccCCC-CCh-hHHHHHHHHHhHhCCC---ceEEecchH-HHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC
Q 024619           45 GPYDYTRS-GNP-TRDALESLLAKLDKAD---RALCFTSGM-AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (265)
Q Consensus        45 ~~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~~~g~-~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g  118 (265)
                      ..+.|++. |.+ +++++++++.+.+|.+   +.+++++|+ +++..+..++++||.|++++|+|+.+...   .....|
T Consensus        65 ~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~l~~~Gd~Vlv~~P~Y~~~~~~---~~~~~g  141 (433)
T PRK06855         65 KSYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAIAKIYGLLRREARVIGPSPAYSTHSSA---EAAHAG  141 (433)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHHHHHHHHHHhcCCCCeEEEeCCCCchHHHH---HHHhcC
Confidence            45789887 887 5999999998876643   456666665 88875556889999999999999987521   123346


Q ss_pred             eEEEeecC-------CCHHHHHhhcC--CCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCcC-
Q 024619          119 VVVKRVNT-------CDLDEVASAIG--PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR-  185 (265)
Q Consensus       119 ~~~~~~~~-------~d~~~l~~~~~--~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~~-  185 (265)
                      ++++.+++       .|++++++.+.  ++++++++++|+||||.+++   +++|+++|+++|++||+||+|+.-.+.. 
T Consensus       142 ~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~  221 (433)
T PRK06855        142 YPPVTYRLDPENNWYPDLDDLENKVKYNPSIAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGK  221 (433)
T ss_pred             CeEEEEecccccCCCCCHHHHHHHHhcCCCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC
Confidence            77766653       27899999886  46899999999999999976   6889999999999999999997543311 


Q ss_pred             ---C-C---CCCccEEEeccccccccCCCceeeEEEee
Q 024619          186 ---P-L---ELGADIVMHSATKFIAGHSDVMAGVLAVK  216 (265)
Q Consensus       186 ---~-~---~~~~di~~~s~sK~~~g~~g~~~G~v~~~  216 (265)
                         + .   ..+..|++.||||.+ +.+|+|+||++.+
T Consensus       222 ~~~sl~~~~~~~~~I~~~S~SK~~-~~pGlRiG~ii~p  258 (433)
T PRK06855        222 KTVPLSEVIGDVPGIALKGISKEL-PWPGSRCGWIEVY  258 (433)
T ss_pred             CCCCHHHHcCcCCeEEEecCcccc-CCCcceEEEEEEe
Confidence               1 1   112469999999999 6678999999974

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=99.92  E-value=9.3e-24  Score=176.79  Aligned_cols=214  Identities=19%  Similarity=0.242  Sum_probs=164.9

Q ss_pred             EeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCC-hhHHHHHHHHHhHhCCC---ceEEecchH-HHHH-HH
Q 024619           13 LMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGN-PTRDALESLLAKLDKAD---RALCFTSGM-AALA-AV   86 (265)
Q Consensus        13 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~-~~~~~l~~~l~~~~g~~---~~i~~~~g~-~al~-~~   86 (265)
                      ++.+- ..|..-..+|++.++..-    ..+.+.++|+ .+. .+.+++..+.++.++-+   +.++++.|- .++. ++
T Consensus        27 vlPmW-VADMDf~~pp~i~~Al~~----rvdhGvfGY~-~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I  100 (388)
T COG1168          27 VLPMW-VADMDFPTPPEIIEALRE----RVDHGVFGYP-YGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAI  100 (388)
T ss_pred             cceee-eecccCCCCHHHHHHHHH----HHhcCCCCCC-CCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHH
Confidence            33443 556655666666666332    2345788998 544 47999999999998754   567777775 8886 88


Q ss_pred             HHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC--------CHHHHHhhcC-CCceEEEEecCCCCcccc--
Q 024619           87 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--------DLDEVASAIG-PWTKLVWVESPTNPRQQI--  155 (265)
Q Consensus        87 ~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--------d~~~l~~~~~-~~~~~i~~~~~~np~G~~--  155 (265)
                      ..+.++||.|++..|.|+++.    ...+..|.+++.+|+.        |++++++++. ++++++++|+||||+|.+  
T Consensus       101 ~~~T~~gd~Vvi~tPvY~PF~----~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt  176 (388)
T COG1168         101 RALTKPGDGVVIQTPVYPPFY----NAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWT  176 (388)
T ss_pred             HHhCcCCCeeEecCCCchHHH----HHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCcccc
Confidence            999999999999999999997    5668899999999864        8999999987 457999999999999999  


Q ss_pred             -ccHHHHHHHHHHcCCEEEEeCCcCCCCCc----------CCCCCCccEEEeccccccccCCCceeeEEEeechhHHH-H
Q 024619          156 -CDIRKIAEMAHAHGALLLVDNSIMSPVLS----------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-E  223 (265)
Q Consensus       156 -~~l~~i~~~a~~~~~~li~D~~~~~~~~~----------~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~-~  223 (265)
                       .+|.+|.++|++||+.||.||+|+.-.+.          ++...+..+++.|.||+|+ -+|++++.++..++.+.. .
T Consensus       177 ~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFN-laGL~~a~~Ii~n~~lr~~~  255 (388)
T COG1168         177 KEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFN-LAGLKCAYIIISNRELRAKF  255 (388)
T ss_pred             HHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeecccccc-chhhhheeEEecCHHHHHHH
Confidence             46899999999999999999999855442          1222356799999999995 678999999998887744 3


Q ss_pred             HHHHHHhccCCCCh
Q 024619          224 LYFLQNAEGSGLAP  237 (265)
Q Consensus       224 ~~~~~~~~~~~~~~  237 (265)
                      ...+........+.
T Consensus       256 ~~~l~~~~~~~~n~  269 (388)
T COG1168         256 LKRLKRNGLHGPSA  269 (388)
T ss_pred             HHHHHHhcCCCCch
Confidence            44444444444553

>PRK07683 aminotransferase A; Validated

Probab=99.92  E-value=1.7e-23  Score=184.43  Aligned_cols=173  Identities=19%  Similarity=0.211  Sum_probs=135.3

Q ss_pred             CCccCCC-CCh-hHHHHHHHHHhHhCC--C-c-eEEecch-HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCC
Q 024619           46 PYDYTRS-GNP-TRDALESLLAKLDKA--D-R-ALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (265)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~--~-~-~i~~~~g-~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~  117 (265)
                      ...|++. |.+ +++++++++.+.+|.  + + .+++++| ++|+. ++..++++||+|+++.|+|+.+.    .+++..
T Consensus        58 ~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~----~~~~~~  133 (387)
T PRK07683         58 YTSYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDIAFRTILEPGTEVILPAPIYPGYE----PIIRLC  133 (387)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCccchH----HHHHHc
Confidence            4578766 776 488888888776553  2 2 4555555 59986 66677899999999999999886    444667


Q ss_pred             CeEEEeecCC------CHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc----
Q 024619          118 GVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----  184 (265)
Q Consensus       118 g~~~~~~~~~------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~----  184 (265)
                      |++++.++.+      |.+++++.+.+++++|++++|+||||.+.+   +++|+++|+++|+++|+||+|+...+.    
T Consensus       134 g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~  213 (387)
T PRK07683        134 GAKPVFIDTRSTGFRLTAEALENAITEKTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHT  213 (387)
T ss_pred             CCEEEEeecCcccCCCCHHHHHHhcCcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCcC
Confidence            8999988754      568899888888999999999999999965   789999999999999999999854332    


Q ss_pred             CCC----CCCccEEEeccccccccCCCceeeEEEeechhHHHH
Q 024619          185 RPL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE  223 (265)
Q Consensus       185 ~~~----~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~  223 (265)
                      ...    ..+.++++.|+||.+ |.+|+|.||++.+++.+...
T Consensus       214 ~~~~~~~~~~~vi~~~s~SK~~-~~pGlRiG~i~~~~~l~~~~  255 (387)
T PRK07683        214 SIAHFPEMREKTIVINGLSKSH-SMTGWRIGFLFAPSYLAKHI  255 (387)
T ss_pred             ChhhccCCcCCeEEEeeccccc-cCccceeEEEEcCHHHHHHH
Confidence            111    124579999999999 66789999999887655443

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=99.92  E-value=1.9e-23  Score=187.83  Aligned_cols=195  Identities=17%  Similarity=0.215  Sum_probs=142.9

Q ss_pred             CccCCC-CCh-hHHHHHHHHHhHhC----CC-ceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcC-C
Q 024619           47 YDYTRS-GNP-TRDALESLLAKLDK----AD-RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTP-K  116 (265)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~~l~~~~g----~~-~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~-~  116 (265)
                      ..|++. |.+ +++++++++.+.+|    .+ +.|++++|+ +++. ++..++++||.|++++|.|+.+..    .+. .
T Consensus        80 ~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l~~pGd~Vlv~~P~Y~~~~~----~~~~~  155 (468)
T PLN02450         80 ALFQDYHGLPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLAEPGDAFLLPTPYYPGFDR----DLKWR  155 (468)
T ss_pred             hcCCCCCChHHHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHhCCCCCEEEECCCCCCchHH----HHhhc
Confidence            447776 875 59999999988765    22 456677776 8886 677789999999999999999963    334 5


Q ss_pred             CCeEEEeecCC-------CHHHHHhhcC------CCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCC
Q 024619          117 TGVVVKRVNTC-------DLDEVASAIG------PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMS  180 (265)
Q Consensus       117 ~g~~~~~~~~~-------d~~~l~~~~~------~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~  180 (265)
                      .|++++.++.+       |++++++++.      .++++|++++|+||||.+++   +++|+++|+++|++||+||+|+.
T Consensus       156 ~g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~  235 (468)
T PLN02450        156 TGVEIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSG  235 (468)
T ss_pred             CCcEEEEEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccc
Confidence            78899888753       5677877764      37899999999999999976   67899999999999999999984


Q ss_pred             CCCc-----CCC------------CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHH
Q 024619          181 PVLS-----RPL------------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC  243 (265)
Q Consensus       181 ~~~~-----~~~------------~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (265)
                      ..+.     +..            ..+..+++.||||.+ +.+|+|+|+++++++.+.+........  ...+...+..+
T Consensus       236 ~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~-~l~GlRiG~li~~~~~l~~~~~~~~~~--~~~s~~~Q~a~  312 (468)
T PLN02450        236 TVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDL-GLPGFRVGAIYSNDEMVVSAATKMSSF--GLVSSQTQYLL  312 (468)
T ss_pred             cccCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccC-CCCCccEEEEEECCHHHHHHHHHHhhc--CCCCHHHHHHH
Confidence            3221     101            234679999999999 678999999999866554544333222  23454444444


Q ss_pred             HhccC
Q 024619          244 LRGVK  248 (265)
Q Consensus       244 ~~~l~  248 (265)
                      ...|+
T Consensus       313 ~~~L~  317 (468)
T PLN02450        313 SALLS  317 (468)
T ss_pred             HHHhC
Confidence            44443

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=99.92  E-value=1.3e-23  Score=186.52  Aligned_cols=172  Identities=13%  Similarity=0.200  Sum_probs=128.4

Q ss_pred             CCCccCCC-CCh-hHHHHHHHHHhHhCC--C-ceEEecchH-HHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC
Q 024619           45 GPYDYTRS-GNP-TRDALESLLAKLDKA--D-RALCFTSGM-AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (265)
Q Consensus        45 ~~~~y~~~-g~~-~~~~l~~~l~~~~g~--~-~~i~~~~g~-~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g  118 (265)
                      ..+.|++. |.+ +++++++++.+..|.  + +.|++++|+ +++.++..++++||+|++++|+|+.+.    ..++..|
T Consensus        68 ~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~l~~~~~~gd~V~v~~P~Y~~~~----~~~~~~g  143 (409)
T PRK07590         68 TFRGYGPEQGYDFLREKIAENDYQARGCDISADEIFISDGAKCDTGNILDIFGPDNTIAVTDPVYPVYV----DTNVMAG  143 (409)
T ss_pred             CccCCCCCCCCHHHHHHHHHHHHHhcCCcCChhhEEECCCHHHHHHHHHHhcCCCCEEEEeCCCCcchH----HHHHHcC
Confidence            34678766 876 589999988776653  2 567777776 888766777899999999999999997    4446666


Q ss_pred             eE-----------EEeecCCCHHHHHhhc-CCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCC
Q 024619          119 VV-----------VKRVNTCDLDEVASAI-GPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVL  183 (265)
Q Consensus       119 ~~-----------~~~~~~~d~~~l~~~~-~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~  183 (265)
                      .+           ++.++++.-+.+...+ .+++++|++++|+||||.+++   +++|+++|++||++||+||+|+....
T Consensus       144 ~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~  223 (409)
T PRK07590        144 RTGEANEDGRYSGIVYLPCTAENNFVPELPEEKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFIS  223 (409)
T ss_pred             CcccccccccccceeEeecccccCCcccCcccCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhcc
Confidence            65           7777764211222222 267899999999999999976   67899999999999999999974322


Q ss_pred             c----CC-C----CCCccEEEeccccccccCCCceeeEEEeechhHH
Q 024619          184 S----RP-L----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA  221 (265)
Q Consensus       184 ~----~~-~----~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~  221 (265)
                      .    .+ .    ..+..|+++||||.+ |.+|+|+||++++++.+.
T Consensus       224 ~~~~~~~~~~~~~~~~~vi~~~SfSK~~-~~pGlRiG~~i~~~~li~  269 (409)
T PRK07590        224 DPSLPHSIYEIEGARECAIEFRSFSKTA-GFTGTRCAYTVVPKELKG  269 (409)
T ss_pred             CCCCCcchhhCCCcccceEEEecCcccc-CCcCceeEEEEcCHHHhh
Confidence            1    11 1    113568999999999 678899999998876653

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=99.92  E-value=7.5e-24  Score=187.24  Aligned_cols=201  Identities=18%  Similarity=0.192  Sum_probs=153.3

Q ss_pred             cceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccC---CC-CCh-hHHHHHHHHHhHhCCCceEEecchHHHH
Q 024619            9 VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYT---RS-GNP-TRDALESLLAKLDKADRALCFTSGMAAL   83 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~---~~-g~~-~~~~l~~~l~~~~g~~~~i~~~~g~~al   83 (265)
                      .+..+++|+ +++++|..++|.+.........  . ..+.|.   .. |.+ .++++++++++++|.++.+++++|++++
T Consensus        40 ~g~~~i~l~-~~~~~~~~~~~~i~~a~~~~~~--~-~~~~~~~~~~~~G~~~l~~~l~~~la~~~g~~~~i~~tsG~~a~  115 (397)
T PRK06939         40 DGKEVINFC-ANNYLGLANHPELIAAAKAALD--S-HGFGMASVRFICGTQDLHKELEEKLAKFLGTEDAILYSSCFDAN  115 (397)
T ss_pred             CCCeEEEee-ccCccccCCCHHHHHHHHHHHH--H-cCCCCcccccccCCcHHHHHHHHHHHHHhCCCcEEEEcChHHHH
Confidence            345789999 7888888777766554322211  1 112232   22 664 6999999999999988899999998777


Q ss_pred             H-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCC------CceEEEEecCCCCccccc
Q 024619           84 A-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP------WTKLVWVESPTNPRQQIC  156 (265)
Q Consensus        84 ~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~------~~~~i~~~~~~np~G~~~  156 (265)
                      . ++..++++||+|++++|.|+++...    ++..+.+++.++..|++++++.+.+      ++++|++++.+|++|.+.
T Consensus       116 ~~~~~~l~~~gd~vi~~~~~~~~~~~~----~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~  191 (397)
T PRK06939        116 GGLFETLLGKEDAIISDALNHASIIDG----VRLCKAKRYRYANNDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIA  191 (397)
T ss_pred             HHHHHHhCCCCCEEEEEhhhhHHHHHH----HHhcCCceEEeCCCCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcC
Confidence            4 6777899999999999999988643    3456777788877788888877752      678888888999999999


Q ss_pred             cHHHHHHHHHHcCCEEEEeCCcCCCCCcC---------CCCCCccEEEeccccccccCCCceeeEEEeechhH
Q 024619          157 DIRKIAEMAHAHGALLLVDNSIMSPVLSR---------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       157 ~l~~i~~~a~~~~~~li~D~~~~~~~~~~---------~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                      ++++|.++|+++|++||+||+|+.+....         ....+.|++++|+||+++|+   ++|+++++++.+
T Consensus       192 ~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~g~---r~G~v~~~~~~~  261 (397)
T PRK06939        192 PLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALGGA---SGGYTAGRKEVI  261 (397)
T ss_pred             CHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhCcc---CceEEEeCHHHH
Confidence            99999999999999999999997654321         11225789999999999543   579998876544

>PRK05764 aspartate aminotransferase; Provisional

Probab=99.92  E-value=3.2e-23  Score=183.15  Aligned_cols=226  Identities=22%  Similarity=0.277  Sum_probs=158.1

Q ss_pred             eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCCC----ceEEecchHHHHH
Q 024619           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKAD----RALCFTSGMAALA   84 (265)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~~----~~i~~~~g~~al~   84 (265)
                      ..+++|+ .++.... +++.+.......   .......|++. |.+ +++++++++.+.+|..    ++++++++++++.
T Consensus        31 ~~~~~l~-~~~~~~~-~~~~~~~~~~~~---~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~  105 (393)
T PRK05764         31 RDVISLG-AGEPDFD-TPEHIKEAAIEA---LDDGKTKYTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALY  105 (393)
T ss_pred             CCEEEeC-CCCCCCC-CCHHHHHHHHHH---HhcCCCCcCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHH
Confidence            4578898 4443222 233333322111   11133457766 654 5888888887776532    3444444568986


Q ss_pred             -HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-------CHHHHHhhcCCCceEEEEecCCCCccccc
Q 024619           85 -AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQIC  156 (265)
Q Consensus        85 -~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~~~~~~~~i~~~~~~np~G~~~  156 (265)
                       ++..++++||.|++++|+|..+.    ..++..|++++.++.+       |++++++.+.+++++|++++|+||||.+.
T Consensus       106 ~~~~~~~~~gd~vl~~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~NPtG~~~  181 (393)
T PRK05764        106 NAFMALLDPGDEVIIPAPYWVSYP----EMVKLAGGVPVFVPTGEENGFKLTVEQLEAAITPKTKALILNSPSNPTGAVY  181 (393)
T ss_pred             HHHHHhcCCCCEEEecCCCCcchH----HHHHHcCCEEEEEecCcccCCcCCHHHHHHhhCccceEEEEECCCCCCCccc
Confidence             66778999999999999999886    4456778999888763       57899998888899999999999999996


Q ss_pred             c---HHHHHHHHHHcCCEEEEeCCcCCCCCc-----C-----CCCCCccEEEeccccccccCCCceeeEEEeechhHHHH
Q 024619          157 D---IRKIAEMAHAHGALLLVDNSIMSPVLS-----R-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE  223 (265)
Q Consensus       157 ~---l~~i~~~a~~~~~~li~D~~~~~~~~~-----~-----~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~  223 (265)
                      +   +++|+++|++||+++++||+|+...+.     .     ....+.++++.|+||.+ +.+|+|+|+++.+++ +.+.
T Consensus       182 ~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~-~~~G~RiG~i~~~~~-~~~~  259 (393)
T PRK05764        182 SPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAY-AMTGWRLGYAAGPKE-LIKA  259 (393)
T ss_pred             CHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccc-cCccceeEEEecCHH-HHHH
Confidence            4   789999999999999999999754321     0     11235789999999999 667899999987654 4444


Q ss_pred             HHHHHHhccCCCChhHHHHHHhcc
Q 024619          224 LYFLQNAEGSGLAPFDCWICLRGV  247 (265)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~l  247 (265)
                      ....+.......++..++.+.+.+
T Consensus       260 ~~~~~~~~~~~~~~~~q~~~~~~l  283 (393)
T PRK05764        260 MSKLQSHSTSNPTSIAQYAAVAAL  283 (393)
T ss_pred             HHHHHhhcccCCChHHHHHHHHHH
Confidence            555554445556666555544444

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=99.92  E-value=1.2e-23  Score=186.77  Aligned_cols=206  Identities=23%  Similarity=0.309  Sum_probs=165.4

Q ss_pred             hhHHHHHHHHHhHhCCCceEEecchHHHHHHHHHhcCCCCEEEEcCCCC---CChHHHHHhhcCCCCeEEEeecC---CC
Q 024619           55 PTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLY---GGTDRLLSRVTPKTGVVVKRVNT---CD  128 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~g~~al~~~~~~~~~g~~viv~~~~~---~~~~~~~~~~~~~~g~~~~~~~~---~d  128 (265)
                      ...+.+++.+++++|+++.+++++|++|+.++...+.+||+|++++..|   ++.... ...++..|+++++++.   .+
T Consensus       122 ~r~~~le~~lA~l~gae~alvv~sg~aAi~l~l~~l~~GdeVIvs~~e~v~~ggs~~i-~~~~~~~G~~~~~v~~~~~~~  200 (454)
T TIGR00474       122 SRYSHVEGLLCELTGAEDALVVNNNAAAVLLALNTLAKGKEVIVSRGELVEIGGSFRI-PDVMEQSGAKLVEVGTTNRTH  200 (454)
T ss_pred             hHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHhCCcCEEEECCChhhhhcchhhH-HHHHHHcCCEEEEeCCCCCCC
Confidence            4578999999999999999999999999875556789999999998774   333322 3456778999999986   57


Q ss_pred             HHHHHhhcCCCceEEEEecCCCCc--c--ccccHHHHHHHHHHcCCEEEEeCCcCC---------CC---CcCCCCCCcc
Q 024619          129 LDEVASAIGPWTKLVWVESPTNPR--Q--QICDIRKIAEMAHAHGALLLVDNSIMS---------PV---LSRPLELGAD  192 (265)
Q Consensus       129 ~~~l~~~~~~~~~~i~~~~~~np~--G--~~~~l~~i~~~a~~~~~~li~D~~~~~---------~~---~~~~~~~~~d  192 (265)
                      +++++++++++|++|++++++|++  |  .+.|+++|+++|+++|+++++|.+.+.         +.   ...+...++|
T Consensus       201 l~dle~aI~~~T~lv~~~h~sN~~~~G~~~~~dl~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~GaD  280 (454)
T TIGR00474       201 LKDYEDAITENTALLLKVHTSNYRIVGFTEEVSIAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAGVD  280 (454)
T ss_pred             HHHHHHhcCcCCEEEEEEccCcccccCCCCCCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccHhHcCCC
Confidence            899999999999999999999985  6  478999999999999999999976221         11   1234567899


Q ss_pred             EEEeccccccccCCCceeeEEEeechhH--------HHHHH-------HHHHhccCCCChhHHHHHHhccCchHhhHHHH
Q 024619          193 IVMHSATKFIAGHSDVMAGVLAVKGERL--------AKELY-------FLQNAEGSGLAPFDCWICLRGVKTMALRVEKQ  257 (265)
Q Consensus       193 i~~~s~sK~~~g~~g~~~G~v~~~~~~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  257 (265)
                      ++++|.+||++||.   +|+++++++.+        ...++       .+....+..+++..+|..++.|+.+..+++++
T Consensus       281 iv~fSg~K~LgGp~---~G~i~g~~~~i~~l~~~~l~r~lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~~~  357 (454)
T TIGR00474       281 LVTFSGDKLLGGPQ---AGIIVGKKELIERLKKNPLTRALRVDKLTLAALEATLRLYLDPEKALEKIPTLRMLTQSPEEL  357 (454)
T ss_pred             EEEecCccccCCCe---EEEEEECHHHHHhhhhchhHHHHhhChHHHHHHHHHHHHHhCchhhhhhchHHHHhccCHHHH
Confidence            99999999997773   79999887665        22233       34456667788888999999999999999999


Q ss_pred             hhchhcc
Q 024619          258 QVCFFDL  264 (265)
Q Consensus       258 ~~~~~~l  264 (265)
                      ++++..+
T Consensus       358 ~~~A~~l  364 (454)
T TIGR00474       358 RARAERL  364 (454)
T ss_pred             HHHHHHH
Confidence            9888765

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=99.92  E-value=3.1e-23  Score=184.19  Aligned_cols=200  Identities=18%  Similarity=0.230  Sum_probs=144.1

Q ss_pred             cceeEeeccCCCCCCC--CCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhC--------CC-ceEE
Q 024619            9 VSTLLMNFSNEFDPYG--ALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDK--------AD-RALC   75 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g--------~~-~~i~   75 (265)
                      .+..+++|+.+.....  ..+++.+.......  ........|++. |.+ +++++.+++.+.++        .+ +.++
T Consensus        31 ~~~~~i~l~~g~p~~~~~~~p~~~~~~a~~~~--~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~i~  108 (412)
T PTZ00433         31 SPKSIIKLSVGDPTLDGNLLTPAIQTKALVEA--VDSQECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKKDNVV  108 (412)
T ss_pred             CCCCeeecCCcCCCCcCCCCCCHHHHHHHHHH--hhcCCCCCCCCCCCcHHHHHHHHHHHHhhccccccccCCCChhhEE
Confidence            4567899983322221  23344444332111  111234678877 776 58899999887543        22 4555


Q ss_pred             ecch-HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-------CHHHHHhhcCCCceEEEEe
Q 024619           76 FTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVE  146 (265)
Q Consensus        76 ~~~g-~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~~~~~~~~i~~~  146 (265)
                      +++| ++++. ++..++++||+|+++.|+|+.+.    ..++..|++++.++.+       |++++++.+.+++++|+++
T Consensus       109 it~G~~~al~~~~~~~~~~gd~vlv~~P~y~~~~----~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~i~~~  184 (412)
T PTZ00433        109 LCSGVSHAILMALTALCDEGDNILVPAPGFPHYE----TVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVDDRTKALIMT  184 (412)
T ss_pred             EeCChHHHHHHHHHHhcCCCCEEEEccCCcccHH----HHHHHcCCEEEEEecCccccCcCCHHHHHHHhccCceEEEEe
Confidence            5555 58886 67778899999999999999986    5557788888888753       6889988888889999999


Q ss_pred             cCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc-----CCCC---CCccEEEeccccccccCCCceeeEEEe
Q 024619          147 SPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLE---LGADIVMHSATKFIAGHSDVMAGVLAV  215 (265)
Q Consensus       147 ~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~~~---~~~di~~~s~sK~~~g~~g~~~G~v~~  215 (265)
                      +|+||||.+.+   +++|+++|+++|++||+||+|....+.     ....   ....++++||||.+ |.+|+|.||+++
T Consensus       185 ~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~-~~pGlRlG~~i~  263 (412)
T PTZ00433        185 NPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVILGGTAKNL-VVPGWRLGWLLL  263 (412)
T ss_pred             CCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCceEEEccchhhc-CCCCeeEEEEEE
Confidence            99999999865   788899999999999999999743321     1111   12468999999999 678999999997

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=99.92  E-value=3.8e-23  Score=182.46  Aligned_cols=196  Identities=16%  Similarity=0.208  Sum_probs=143.0

Q ss_pred             CccCCC-CCh-hHHHHHHHHHhHhCC----CceEEecch-HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC
Q 024619           47 YDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (265)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~g-~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g  118 (265)
                      ..|.+. |.+ +++++++++.+.+|.    ++.+++++| ++++. ++..++++||+|++++|+|+.+.    ..++..|
T Consensus        61 ~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vl~~~p~y~~~~----~~~~~~g  136 (391)
T PRK07309         61 SHYTGMAGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSASLTAILEPGDKVLLPAPAYPGYE----PIVNLVG  136 (391)
T ss_pred             CCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcchH----HHHHHcC
Confidence            357766 776 588999999877664    244555555 58886 67778899999999999999986    4456678


Q ss_pred             eEEEeecCC------CHHHHHhhcCC---CceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc--
Q 024619          119 VVVKRVNTC------DLDEVASAIGP---WTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS--  184 (265)
Q Consensus       119 ~~~~~~~~~------d~~~l~~~~~~---~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~--  184 (265)
                      .+++.++.+      |++++++++.+   ++++|++++|+||||.+.+   +++|+++|++||+++|+|++|+...+.  
T Consensus       137 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~  216 (391)
T PRK07309        137 AEIVEIDTTENDFVLTPEMLEKAILEQGDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGE  216 (391)
T ss_pred             CEEEEEecCCcCCcCCHHHHHHHhhccCCCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCC
Confidence            888888753      67888888753   6899999999999999865   789999999999999999999754331  


Q ss_pred             ---CC--CCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619          185 ---RP--LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       185 ---~~--~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                         ..  ...+..+++.|+||.+ |.+|+|.|+++++++.+.... ..........+...+..+.+.++
T Consensus       217 ~~~~~~~~~~~~~i~~~S~SK~~-g~~GlRvG~~v~~~~~~~~~~-~~~~~~~~~~~~~~q~~~~~~l~  283 (391)
T PRK07309        217 PHVSIAEYLPDQTILINGLSKSH-AMTGWRIGLIFAPAEFTAQLI-KSHQYLVTAATTMAQFAAVEALT  283 (391)
T ss_pred             CCCCHHHhccCCEEEEecChhhc-cCccceeEEEEeCHHHHHHHH-HHHhhcccCCChHHHHHHHHHHh
Confidence               11  1224679999999999 667999999998876554433 33333333344444444333343

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=99.92  E-value=6.6e-24  Score=187.03  Aligned_cols=207  Identities=18%  Similarity=0.190  Sum_probs=159.8

Q ss_pred             CcceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCC---ccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH
Q 024619            8 GVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPY---DYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA   84 (265)
Q Consensus         8 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~   84 (265)
                      ..+.++||+. --.-+|+.++....+..... ....+...   .......+..+++++.+++++|.++.+++++|++++.
T Consensus        15 ~~~~~~~~~~-~~~~~~p~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~~~~~~~~g~t~a~~   92 (387)
T PRK09331         15 RLEEEFINLD-PIQRGGILTPEARKALIEYG-DGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLGMDEARVTHGAREGKF   92 (387)
T ss_pred             cccccccccC-hhhcCCCCCHHHHHHHHHHH-hccCCCcccccccccccChHHHHHHHHHHHHhCCCcEEEeCCHHHHHH
Confidence            3455678877 55557877777666654222 11112211   1222234679999999999999998888888888885


Q ss_pred             -HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC-------CCHHHHHhhcC-------CCceEEEEecCC
Q 024619           85 -AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-------CDLDEVASAIG-------PWTKLVWVESPT  149 (265)
Q Consensus        85 -~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~~~-------~~~~~i~~~~~~  149 (265)
                       ++..++++||+|+++.++|.+...    .++..|++++.++.       .|++++++++.       +++++|++++++
T Consensus        93 ~al~~l~~~gd~Vlv~~~~h~s~~~----~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~  168 (387)
T PRK09331         93 AVMHSLCKKGDYVVLDGLAHYTSYV----AAERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVD  168 (387)
T ss_pred             HHHHHhcCCCCEEEECCCchHHHHH----HHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCC
Confidence             777889999999999999877753    34667899999886       37899988875       268999999999


Q ss_pred             CCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEeccccccccCCCceeeEEEeechhHHH
Q 024619          150 NPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK  222 (265)
Q Consensus       150 np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~  222 (265)
                      |++|.+.|+++|.++|+++|+++++|++|+.|.++ .....+.|++++|++|++++|+|  +|+++++++.+..
T Consensus       169 ~~tG~~~~l~~I~~la~~~g~~livD~a~~~g~~~~~~~~~g~D~~~~s~~K~l~~~~~--~G~l~~~~~~i~~  240 (387)
T PRK09331        169 GNYGNLADAKKVAKVAHEYGIPFLLNGAYTVGRMPVDGKKLGADFIVGSGHKSMAASAP--SGVLATTEEYADK  240 (387)
T ss_pred             CCCcccccHHHHHHHHHHcCCEEEEECCcccCCcCCCHHHcCCCEEEeeCcccccCCCC--EEEEEECHHHHhh
Confidence            99999999999999999999999999999988764 34456899999999999987665  6999887755443

>PRK08175 aminotransferase; Validated

Probab=99.92  E-value=2.2e-23  Score=184.22  Aligned_cols=216  Identities=19%  Similarity=0.227  Sum_probs=151.2

Q ss_pred             eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCC----CceEEecchH-HHH
Q 024619           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGM-AAL   83 (265)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~g~-~al   83 (265)
                      ..+++|+ ..+..+..++..+.... ..  ......+.|++. |.+ +++++++++.+.+|.    ++.+++++|+ +++
T Consensus        29 ~~~i~l~-~g~p~~~~~~~~~~~~~-~~--~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~l  104 (395)
T PRK08175         29 EDIIDFS-MGNPDGPTPPHIVEKLC-EV--AQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGL  104 (395)
T ss_pred             CCeEEcC-CCCCCCCCCHHHHHHHH-HH--HhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHH
Confidence            4578888 44444433322333321 11  111234678877 886 599999999877653    2357777776 888


Q ss_pred             H-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC----CHHHHHhhcC---CCceEEEEecCCCCcccc
Q 024619           84 A-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLDEVASAIG---PWTKLVWVESPTNPRQQI  155 (265)
Q Consensus        84 ~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~~~---~~~~~i~~~~~~np~G~~  155 (265)
                      . ++..++++||+|++++|+|+.+...    ++..|.+++.++.+    ..++++++++   +++++|++++|+||||.+
T Consensus       105 ~~~~~~~~~~gd~Vlv~~P~y~~~~~~----~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~  180 (395)
T PRK08175        105 AHLMLATLDHGDTVLVPNPSYPIHIYG----AVIAGAQVRSVPLVEGVDFFNELERAIRESYPKPKMMILGFPSNPTAQC  180 (395)
T ss_pred             HHHHHHhCCCCCEEEEcCCCCcchHHH----HHHcCCeEEEEecccCCCcHHHHHHHHhhccCCceEEEEeCCCCCCCCC
Confidence            6 6677899999999999999988643    35678888888764    3677777665   478999999999999999


Q ss_pred             ccH---HHHHHHHHHcCCEEEEeCCcCCCCCc-----CCC----CCCccEEEeccccccccCCCceeeEEEeechhHHHH
Q 024619          156 CDI---RKIAEMAHAHGALLLVDNSIMSPVLS-----RPL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE  223 (265)
Q Consensus       156 ~~l---~~i~~~a~~~~~~li~D~~~~~~~~~-----~~~----~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~  223 (265)
                      .+.   ++|+++|+++|+++|+||+|+...+.     ...    ..+..+++.|+||.+ |.+|+|+||++.+++.+ +.
T Consensus       181 ~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~pGlRiG~~~~~~~l~-~~  258 (395)
T PRK08175        181 VELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSY-NMAGWRIGFMVGNPELV-SA  258 (395)
T ss_pred             CCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeeccccc-cCcchhheeeeCCHHHH-HH
Confidence            876   79999999999999999999643321     111    124568899999999 67889999998766544 44


Q ss_pred             HHHHHHhccCCCC
Q 024619          224 LYFLQNAEGSGLA  236 (265)
Q Consensus       224 ~~~~~~~~~~~~~  236 (265)
                      +...+.......+
T Consensus       259 ~~~~~~~~~~~~~  271 (395)
T PRK08175        259 LARIKSYHDYGTF  271 (395)
T ss_pred             HHHHHhhcccCCC
Confidence            4444443333333

>PRK07337 aminotransferase; Validated

Probab=99.92  E-value=2.7e-23  Score=183.27  Aligned_cols=191  Identities=23%  Similarity=0.254  Sum_probs=141.0

Q ss_pred             CCccCCC-CCh-hHHHHHHHHHhHhCCC---ceEEecch-HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC
Q 024619           46 PYDYTRS-GNP-TRDALESLLAKLDKAD---RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (265)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~~~g-~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g  118 (265)
                      ...|++. |.+ +++++++++.+.+|.+   +.+++++| ++++. ++..++++||+|++++|+|+.+..    .++..|
T Consensus        60 ~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g  135 (388)
T PRK07337         60 VTQYTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLACLALVERGDEVLMPDPSYPCNRH----FVAAAE  135 (388)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHH----HHHHcC
Confidence            4568776 775 5889999988877642   34445555 58886 667789999999999999999863    345567


Q ss_pred             eEEEeecCC-------CHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc----
Q 024619          119 VVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----  184 (265)
Q Consensus       119 ~~~~~~~~~-------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~----  184 (265)
                      .+++.++.+       |++++++.+.+++++|++++|+||||.+.+   +++|+++|+++++++|+||+|....+.    
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~  215 (388)
T PRK07337        136 GRPVLVPSGPAERFQLTAADVEAAWGERTRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPV  215 (388)
T ss_pred             CEEEEeecCCccCCcCCHHHHHhhcCccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCc
Confidence            788877653       689999999889999999999999999875   788999999999999999998743321    


Q ss_pred             CCCCC-CccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHH
Q 024619          185 RPLEL-GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI  242 (265)
Q Consensus       185 ~~~~~-~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (265)
                      ..... +..+++.|+||.+ +.+|+|+||++++++.+ +.+...........+...+..
T Consensus       216 ~~~~~~~~vi~~~S~SK~~-~~~G~RiG~~~~~~~l~-~~l~~~~~~~~~~~s~~~q~~  272 (388)
T PRK07337        216 SALSLGDDVITINSFSKYF-NMTGWRLGWLVVPEALV-GTFEKLAQNLFICASALAQHA  272 (388)
T ss_pred             ChhhccCCEEEEEechhhc-CCchhheeeeecCHHHH-HHHHHHHHHhccCCChHHHHH
Confidence            11122 2347899999999 67889999999877544 444444433333444444433

>PLN02656 tyrosine transaminase

Probab=99.91  E-value=4.6e-23  Score=182.92  Aligned_cols=200  Identities=21%  Similarity=0.208  Sum_probs=144.7

Q ss_pred             cceeEeeccCCCCCC--CCCC-CCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCCC---ceEEecch-
Q 024619            9 VSTLLMNFSNEFDPY--GALS-TPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKAD---RALCFTSG-   79 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~--g~~~-~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~~~g-   79 (265)
                      .+..+++|+ ..+..  +..+ ++.+.... . +.......+.|++. |.+ +++++++++.+.+|..   +.+++++| 
T Consensus        29 ~~~~~i~l~-~G~p~~~~~~~~~~~~~~~~-~-~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~  105 (409)
T PLN02656         29 NGKRVISLG-MGDPTAYSCFHTTHVAQEAV-V-DALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFITSGC  105 (409)
T ss_pred             cCCeeeecC-CCCCCcCCCCCCCHHHHHHH-H-HHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEEeCCh
Confidence            445789998 44442  2222 23333321 1 11122234678777 776 5888999888765532   34445555 


Q ss_pred             HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC-------CCHHHHHhhcCCCceEEEEecCCCC
Q 024619           80 MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNP  151 (265)
Q Consensus        80 ~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~~~~~~~~i~~~~~~np  151 (265)
                      ++++. ++..++++||+|++++|+|+.+.    ..++..|++++.+++       .|++++++++.+++++|++++|+||
T Consensus       106 ~~al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NP  181 (409)
T PLN02656        106 TQAIDVALSMLARPGANILLPRPGFPIYE----LCAAFRHLEVRYVDLLPEKGWEVDLDAVEALADQNTVALVIINPGNP  181 (409)
T ss_pred             HHHHHHHHHHHhCCCCeEEEeCCCCCcHH----HHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhccCceEEEEECCCCC
Confidence            58886 66777899999999999999885    344557888888875       2688999888888999999999999


Q ss_pred             ccccc---cHHHHHHHHHHcCCEEEEeCCcCCCCCc----CC----CCCCccEEEeccccccccCCCceeeEEEee
Q 024619          152 RQQIC---DIRKIAEMAHAHGALLLVDNSIMSPVLS----RP----LELGADIVMHSATKFIAGHSDVMAGVLAVK  216 (265)
Q Consensus       152 ~G~~~---~l~~i~~~a~~~~~~li~D~~~~~~~~~----~~----~~~~~di~~~s~sK~~~g~~g~~~G~v~~~  216 (265)
                      ||.+.   ++++|+++|+++|++||+||+|+...+.    .+    ......+++.||||.| +.+|+|+||++++
T Consensus       182 tG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f-~~pGlRiG~~i~~  256 (409)
T PLN02656        182 CGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRW-IVPGWRLGWFVTT  256 (409)
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchhc-cCcceeEEEEEEe
Confidence            99995   5889999999999999999999744331    11    1224679999999998 5688999999985

>PRK06107 aspartate aminotransferase; Provisional

Probab=99.91  E-value=3.3e-23  Score=183.49  Aligned_cols=196  Identities=18%  Similarity=0.231  Sum_probs=145.1

Q ss_pred             CCccCCC-CCh-hHHHHHHHHHhHhCCC---ceEEecch-HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC
Q 024619           46 PYDYTRS-GNP-TRDALESLLAKLDKAD---RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (265)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~~~g-~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g  118 (265)
                      ...|++. |.+ +++++++++++.+|.+   +.+++++| ++|+. ++..++++||.|++++|+|+.+....    ...+
T Consensus        63 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~vl~~~p~y~~y~~~~----~~~~  138 (402)
T PRK06107         63 ETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALMATLEAGDEVIIPAPYWVSYPDMV----LAND  138 (402)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhcCCCCEEEEecCCCcCHHHHH----HHcC
Confidence            4578887 886 5999999999887763   45666666 58886 66678999999999999999886433    3445


Q ss_pred             eEEEeecC-------CCHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHc-CCEEEEeCCcCCCCCc---
Q 024619          119 VVVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAH-GALLLVDNSIMSPVLS---  184 (265)
Q Consensus       119 ~~~~~~~~-------~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~-~~~li~D~~~~~~~~~---  184 (265)
                      .+++.++.       .|++++++.+.+++++|++++|+||||.+.+   +++|+++|+++ ++++|+||+|+...+.   
T Consensus       139 ~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~  218 (402)
T PRK06107        139 GTPVIVACPEEQGFKLTPEALEAAITPRTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEP  218 (402)
T ss_pred             CEEEEecCCcccCCCCCHHHHHhhcCcCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCC
Confidence            56666653       2578899988888999999999999999975   57889999998 9999999999642221   


Q ss_pred             --C-----CCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhcc
Q 024619          185 --R-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV  247 (265)
Q Consensus       185 --~-----~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  247 (265)
                        .     +...+..++++|+||.+ +.+|+|.||++.+++.+ +.+...........+...++.+.+.|
T Consensus       219 ~~~~~~~~~~~~~~vi~~~S~SK~~-~~pGlRiG~~~~~~~~~-~~~~~~~~~~~~~~s~~~q~~~~~~l  286 (402)
T PRK06107        219 TPHLLAAAPELRDRVLVTNGVSKTY-AMTGWRIGYAAGPADLI-AAINKLQSQSSSCPSSISQAAAAAAL  286 (402)
T ss_pred             CCCHHHhCcCccCCEEEEeccchhh-cCcccceeeeecCHHHH-HHHHHHHHhcccCCChHHHHHHHHHh
Confidence              1     11124679999999999 77889999999877544 44555555444555655555544444

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.91  E-value=8.4e-24  Score=187.80  Aligned_cols=201  Identities=21%  Similarity=0.172  Sum_probs=146.3

Q ss_pred             eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCC-CccCCCCCh-hHHHHHHHHHhHhCCCceEEecchHHHHH-HHH
Q 024619           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGP-YDYTRSGNP-TRDALESLLAKLDKADRALCFTSGMAALA-AVT   87 (265)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~y~~~g~~-~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~   87 (265)
                      ..+++|+ +|||+|..++|.+..+..........+. -.+...|.+ ...++++.+++++|.++.+++++|++++. ++.
T Consensus        46 ~~~~~~~-sn~yl~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g~~~~i~~~sG~~a~~~~i~  124 (410)
T PRK13392         46 RRVTIWC-SNDYLGMGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHGKESALLFTSGYVSNDAALS  124 (410)
T ss_pred             ceEEEEE-CCCccCCCCCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHH
Confidence            4589999 8999999998877665432211111111 111122554 58899999999999989999999997764 555


Q ss_pred             Hhc--CCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcC----CCceEEEEecCCCCccccccHHHH
Q 024619           88 HLL--GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG----PWTKLVWVESPTNPRQQICDIRKI  161 (265)
Q Consensus        88 ~~~--~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~----~~~~~i~~~~~~np~G~~~~l~~i  161 (265)
                      .+.  .+|+.|+++...|.++..    .++..|.++..++..|.+.+++.+.    +++++|++++|+||+|.+.|+++|
T Consensus       125 ~l~~~~~g~~vi~~~~~h~s~~~----~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG~~~~l~~i  200 (410)
T PRK13392        125 TLGKLLPGCVILSDALNHASMIE----GIRRSGAEKQVFRHNDLADLEEQLASVDPDRPKLIAFESVYSMDGDIAPIEAI  200 (410)
T ss_pred             HHhcCCCCCEEEEehhhhHHHHH----HHHHcCCeEEEEeCCCHHHHHHHHHhccCCCCEEEEEeCCCCCCcccccHHHH
Confidence            454  478988887777766543    3455778877777666666665543    578999999999999999999999


Q ss_pred             HHHHHHcCCEEEEeCCcCCCCCcCC---------CCCCccEEEeccccccccCCCceeeEEEeechhH
Q 024619          162 AEMAHAHGALLLVDNSIMSPVLSRP---------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       162 ~~~a~~~~~~li~D~~~~~~~~~~~---------~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                      .++|+++|+++++||+|+.|.++..         ...+.|++++|+||+++++    +|+++++++.+
T Consensus       201 ~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g~~----GG~~~~~~~~~  264 (410)
T PRK13392        201 CDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGCL----GGYIAASADLI  264 (410)
T ss_pred             HHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhhcc----cchhhcCHHHH
Confidence            9999999999999999996665311         1124689999999999653    37887665433

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=99.91  E-value=1.8e-23  Score=182.23  Aligned_cols=203  Identities=23%  Similarity=0.270  Sum_probs=152.3

Q ss_pred             cceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CC-hhHHHHHHHHHhHhCCCceEEecchHHHH-HH
Q 024619            9 VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GN-PTRDALESLLAKLDKADRALCFTSGMAAL-AA   85 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~-~~~~~l~~~l~~~~g~~~~i~~~~g~~al-~~   85 (265)
                      .+..+++|+ +++++|+.++|.+.................|... |. +...++++.++++++.++.+++++|++++ .+
T Consensus        14 ~g~~~id~~-~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~~i~~~~G~~~~~~~   92 (360)
T TIGR00858        14 DGRRLLNFS-SNDYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKGTEAALLFSSGYLANVGV   92 (360)
T ss_pred             CCceEEecc-cCCcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCCEEEECchHHHHHHH
Confidence            345799999 6788897665555544322211111122223222 55 46889999999999988899999998665 46


Q ss_pred             HHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCC----CceEEEEecCCCCccccccHHHH
Q 024619           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP----WTKLVWVESPTNPRQQICDIRKI  161 (265)
Q Consensus        86 ~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~----~~~~i~~~~~~np~G~~~~l~~i  161 (265)
                      +..++++||+|++++|.|+.+..    .++..|.+++.++..|++++++.+++    ++++|++++++|++|.+.++++|
T Consensus        93 l~~~~~~gd~v~~~~~~~~~~~~----~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~~~~~v~~~~~~~~~G~~~~~~~i  168 (360)
T TIGR00858        93 ISALVGKGDLILSDALNHASLID----GCRLSGARVRRYRHNDVEHLERLLEKNRGERRKLIVTDGVFSMDGDIAPLPQL  168 (360)
T ss_pred             HHHhCCCCCEEEEEccccHHHHH----HHHhcCCceEEecCCCHHHHHHHHHHcccCCCeEEEEeCCccCCCCCcCHHHH
Confidence            67778999999999999988863    34567888888888899999888753    47889999999999999999999


Q ss_pred             HHHHHHcCCEEEEeCCcCCCCCcCC---------C-CCCccEEEeccccccccCCCceeeEEEeechhH
Q 024619          162 AEMAHAHGALLLVDNSIMSPVLSRP---------L-ELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       162 ~~~a~~~~~~li~D~~~~~~~~~~~---------~-~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                      .++|+++|+++|+||+|+.+.+...         . ..+.|++++|+||+++ +.   +|+++.+++.+
T Consensus       169 ~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~-~~---gG~~~~~~~~~  233 (360)
T TIGR00858       169 VALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALG-SY---GAYVAGSQALI  233 (360)
T ss_pred             HHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhh-cc---CcEEEcCHHHH
Confidence            9999999999999999986654210         1 2367899999999994 44   38887766544

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=99.91  E-value=4.1e-23  Score=180.68  Aligned_cols=220  Identities=23%  Similarity=0.304  Sum_probs=151.0

Q ss_pred             eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhC---CC-ceEEecchH-HHH
Q 024619           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDK---AD-RALCFTSGM-AAL   83 (265)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g---~~-~~i~~~~g~-~al   83 (265)
                      ..+++|+ .++...+. ++.+.... ...  .  ....|++. |.+ +++.+++++.+.+|   .+ +.+++++|+ +++
T Consensus        27 ~~~i~l~-~~~p~~~~-~~~~~~~~-~~~--~--~~~~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i   99 (364)
T PRK07865         27 DGIVDLS-VGTPVDPV-PPVIQEAL-AAA--A--DAPGYPTTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELV   99 (364)
T ss_pred             CCEEEcC-CCCCCCCC-CHHHHHHH-HHH--H--hhCCCCCccCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHH
Confidence            3578998 55443322 23332222 111  1  12468776 875 59999999988765   32 567777776 888


Q ss_pred             HH-HHHh-cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCcccccc---H
Q 024619           84 AA-VTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD---I  158 (265)
Q Consensus        84 ~~-~~~~-~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l  158 (265)
                      .. +..+ +++||.|++++|+|+.+.    ..++..|++++.++  +++++.+   +++++|++++|+||||.+.+   +
T Consensus       100 ~~~~~~l~~~~gd~Vl~~~p~y~~~~----~~~~~~g~~~~~~~--~~~~l~~---~~~~~v~~~~p~NPtG~~~~~~~~  170 (364)
T PRK07865        100 AWLPTLLGLGPGDVVVIPELAYPTYE----VGARLAGATVVRAD--SLTELGP---QRPALIWLNSPSNPTGRVLGVDHL  170 (364)
T ss_pred             HHHHHHHcCCCCCEEEECCCCcccHH----HHHHhcCCEEEecC--ChhhCCc---ccceEEEEcCCCCCCCccCCHHHH
Confidence            64 4555 689999999999999986    44567788988875  4444432   67899999999999999965   6


Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCCCCc----C---C----CCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHH
Q 024619          159 RKIAEMAHAHGALLLVDNSIMSPVLS----R---P----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL  227 (265)
Q Consensus       159 ~~i~~~a~~~~~~li~D~~~~~~~~~----~---~----~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~  227 (265)
                      ++|+++|+++|++||+||+|+...+.    .   +    ...+..++++||||.+ +.+|+|+||++.+++.+ +.....
T Consensus       171 ~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~GlRiG~i~~~~~~~-~~~~~~  248 (364)
T PRK07865        171 RKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQS-NLAGYRAGFVAGDPALV-AELLEV  248 (364)
T ss_pred             HHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhcc-CCCceeeEEEecCHHHH-HHHHHH
Confidence            88999999999999999999743221    0   1    1224579999999999 56889999998766544 444444


Q ss_pred             HHhccCCCChhHHHHHHhccC
Q 024619          228 QNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      +.......+...+..+.+.++
T Consensus       249 ~~~~~~~~~~~~q~~~~~~l~  269 (364)
T PRK07865        249 RKHAGMMVPAPVQAAMVAALG  269 (364)
T ss_pred             HHhcCCCcCHHHHHHHHHHhC
Confidence            444444555555554444443

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=99.91  E-value=1e-23  Score=186.79  Aligned_cols=228  Identities=19%  Similarity=0.148  Sum_probs=155.6

Q ss_pred             eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCc-cCCCCC-hhHHHHHHHHHhHhCCCceEEecchHHHHH-HHH
Q 024619           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYD-YTRSGN-PTRDALESLLAKLDKADRALCFTSGMAALA-AVT   87 (265)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-y~~~g~-~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~   87 (265)
                      .++++|+ +|||+|..++|.+..+..........+... ....|. +...++++.+++++|.+..+++++|++|+. ++.
T Consensus        45 ~~~~~~~-sn~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g~~~~l~~~sG~~an~~ai~  123 (402)
T TIGR01821        45 KDVTVWC-SNDYLGMGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHGKESALVFTSGYVANDATLA  123 (402)
T ss_pred             eeEEEeE-ccCcCCCCCCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhCCCeEEEECchHHHHHHHHH
Confidence            5689999 999999999997666543222111111111 111243 568999999999999888999999998875 555


Q ss_pred             HhcC--CCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcC----CCceEEEEecCCCCccccccHHHH
Q 024619           88 HLLG--TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG----PWTKLVWVESPTNPRQQICDIRKI  161 (265)
Q Consensus        88 ~~~~--~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~----~~~~~i~~~~~~np~G~~~~l~~i  161 (265)
                      .+..  +++.|+.+...|.+....    ++..|.++..++..|.+++++.+.    +++++|++++++||+|.+.|+++|
T Consensus       124 ~l~~~~~~~~v~~~~~~h~s~~~~----~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~v~~e~~~~~~G~~~~l~~i  199 (402)
T TIGR01821       124 TLAKIIPGCVIFSDELNHASMIEG----IRHSGAEKFIFRHNDVAHLEKLLQSVDPNRPKIIAFESVYSMDGDIAPIEEI  199 (402)
T ss_pred             HhhCCCCCCEEEEcchHhHHHHHH----HHHcCCeEEEECCCCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccCHHHH
Confidence            5544  677776665566555433    345677777777777777777664    357899999999999999999999


Q ss_pred             HHHHHHcCCEEEEeCCcCCCCCcCC---------CCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHH--h
Q 024619          162 AEMAHAHGALLLVDNSIMSPVLSRP---------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--A  230 (265)
Q Consensus       162 ~~~a~~~~~~li~D~~~~~~~~~~~---------~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~--~  230 (265)
                      .++|+++|+++|+||+|+.|.++..         ...+.|++++|++|.++++    +|+++.+++ +.+.+.....  .
T Consensus       200 ~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~----GG~i~~~~~-~~~~l~~~~~~~~  274 (402)
T TIGR01821       200 CDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGVV----GGYIAASRK-LIDAIRSYAPGFI  274 (402)
T ss_pred             HHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhccC----CceeecCHH-HHHHHHHhCcCce
Confidence            9999999999999999986654311         1124689999999999543    378876654 3333332221  1


Q ss_pred             ccCCCChhHHHHHHhccC
Q 024619          231 EGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       231 ~~~~~~~~~~~~~~~~l~  248 (265)
                      .....++..++.++..++
T Consensus       275 ~t~~~~~~~~aaa~aaL~  292 (402)
T TIGR01821       275 FTTSLPPAIAAGATASIR  292 (402)
T ss_pred             ecCcCCHHHHHHHHHHHH
Confidence            223455555544444443

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=99.91  E-value=4.2e-24  Score=186.72  Aligned_cols=215  Identities=23%  Similarity=0.305  Sum_probs=151.9

Q ss_pred             eEeeccCCCCCCCCCCCCeeeccccccC--CCCCCCCCccCCC-CCh-hHHHHHHHHHhHhC----CCceEEecchH-HH
Q 024619           12 LLMNFSNEFDPYGALSTPLYQTATFKQP--SATENGPYDYTRS-GNP-TRDALESLLAKLDK----ADRALCFTSGM-AA   82 (265)
Q Consensus        12 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g----~~~~i~~~~g~-~a   82 (265)
                      .+|+|+ ++++.+...+|..++......  .......+.|++. |.+ +++++++++.+..|    .+..+++++|+ ++
T Consensus         2 ~~I~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~~   80 (363)
T PF00155_consen    2 DVINLG-SNAPLLLSQNPPPPAAIKAAIRGAATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQAA   80 (363)
T ss_dssp             TEEESS-SSSTSSTTSSHHHHHHHHHHHHHHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHHH
T ss_pred             CEEEEE-CCCCCCcccccchHHHHHHHHHHhhcccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEecccccc
Confidence            479999 888877744444443221111  1122356678877 554 36666666664433    23378888888 56


Q ss_pred             HHH-HHHh-cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeec-------CCCHHHHHhhcCC------CceEEEEec
Q 024619           83 LAA-VTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN-------TCDLDEVASAIGP------WTKLVWVES  147 (265)
Q Consensus        83 l~~-~~~~-~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~-------~~d~~~l~~~~~~------~~~~i~~~~  147 (265)
                      +.. ...+ .++||.|++++|+|+.+.    ..++..|++++.++       ..|++++++.+++      ++++|++++
T Consensus        81 ~~~~~~~~~~~~~~~vlv~~P~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~  156 (363)
T PF00155_consen   81 LFLLLRLLKINPGDTVLVPDPCYPSYI----EAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICN  156 (363)
T ss_dssp             HHHHHHHHHSSTTSEEEEEESSSTHHH----HHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEES
T ss_pred             hhhhhhcccccccccceecCCcccccc----ccccccCceeeeccccccccccccccccccccccccccccccceeeecc
Confidence            664 4555 679999999999999997    45567788998888       3489999998875      578999999


Q ss_pred             CCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCcCC------C--CCC-ccEEEeccccccccCCCceeeEEEe
Q 024619          148 PTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSRP------L--ELG-ADIVMHSATKFIAGHSDVMAGVLAV  215 (265)
Q Consensus       148 ~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~~~------~--~~~-~di~~~s~sK~~~g~~g~~~G~v~~  215 (265)
                      |+||||.+.+   +++|+++|+++|+++|+||+|+.......      .  ..+ ..+++.|+||.+ |.+|+|.|++++
T Consensus       157 p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-g~~GlRvG~i~~  235 (363)
T PF00155_consen  157 PNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSF-GLPGLRVGYIVA  235 (363)
T ss_dssp             SBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEEEEESTTTT-TSGGGTEEEEEE
T ss_pred             cccccccccccccccchhhhhcccccceeeeeceeccccCCCccCcccccccccccceeeeeccccc-cccccccccccc
Confidence            9999999976   56667779999999999999987666522      1  112 369999999999 778999999999


Q ss_pred             echhHHHHHHHHHHhccC
Q 024619          216 KGERLAKELYFLQNAEGS  233 (265)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~  233 (265)
                      ++ .+.+.+.........
T Consensus       236 ~~-~~~~~l~~~~~~~~~  252 (363)
T PF00155_consen  236 PP-ELIERLRRFQRSGLS  252 (363)
T ss_dssp             EH-HHHHHHHHHHHHTTS
T ss_pred             hh-hhhhhhhhccccccc
Confidence            55 444555555544333

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=99.91  E-value=1.1e-22  Score=183.78  Aligned_cols=194  Identities=16%  Similarity=0.205  Sum_probs=139.9

Q ss_pred             CccCCC-CCh-hHHHHHHHHHhHhC----CC-ceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcC-C
Q 024619           47 YDYTRS-GNP-TRDALESLLAKLDK----AD-RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTP-K  116 (265)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~~l~~~~g----~~-~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~-~  116 (265)
                      ..|+.. |.+ +++++++++.+.+|    .+ +.|++++|+ +++. ++..+++|||.|++++|.|+.+...    ++ .
T Consensus        88 ~~y~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l~~pGD~Vlv~~P~Y~~~~~~----~~~~  163 (496)
T PLN02376         88 ANFQDYHGLKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLADPGDVFLIPSPYYAAFDRD----LRWR  163 (496)
T ss_pred             hccCCCCCcHHHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHhCCCCCEEEECCCCccchHHH----HHhh
Confidence            346666 776 59999999988766    33 566677765 8886 7788899999999999999999733    33 5


Q ss_pred             CCeEEEeecCC-------CHHHHHhhc------CCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCC
Q 024619          117 TGVVVKRVNTC-------DLDEVASAI------GPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMS  180 (265)
Q Consensus       117 ~g~~~~~~~~~-------d~~~l~~~~------~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~  180 (265)
                      .|++++.++++       +++++++++      ..++++|++++|+||||.+.+   +++|+++|+++|++||+||+|+.
T Consensus       164 ~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~  243 (496)
T PLN02376        164 TGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAA  243 (496)
T ss_pred             CCCEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccc
Confidence            78899988862       567776542      247899999999999999976   67899999999999999999985


Q ss_pred             CCCc-----CC--C----C-----CCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHH
Q 024619          181 PVLS-----RP--L----E-----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL  244 (265)
Q Consensus       181 ~~~~-----~~--~----~-----~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (265)
                      ..+.     +.  .    +     .+..+++.||||.| |.+|+|+|+++..++.+..........  ..++...+.++.
T Consensus       244 ~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~-glpGlRvG~li~~~~~l~~~~~~~~~~--~~vs~~~Q~a~~  320 (496)
T PLN02376        244 TVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDM-GLPGFRVGIVYSFNDSVVSCARKMSSF--GLVSSQTQLMLA  320 (496)
T ss_pred             cccCCCCcccHHHhhccccccccCCCeEEEEEeccccC-CCCcceEEEEEECCHHHHHHHHHHhhc--CCCCHHHHHHHH
Confidence            4321     10  0    0     01235689999999 678999999998766665544333322  224444444433


Q ss_pred             hcc
Q 024619          245 RGV  247 (265)
Q Consensus       245 ~~l  247 (265)
                      ..|
T Consensus       321 ~~L  323 (496)
T PLN02376        321 SML  323 (496)
T ss_pred             HHh
Confidence            333

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=99.91  E-value=2.4e-23  Score=183.42  Aligned_cols=202  Identities=23%  Similarity=0.241  Sum_probs=153.0

Q ss_pred             ceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCCCceEEecchHHHHH-HH
Q 024619           10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKADRALCFTSGMAALA-AV   86 (265)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~   86 (265)
                      +..+++|+ +++++|..++|.+.................|... |.+ .++++++++++++|.+..+++++|++++. ++
T Consensus        32 g~~~id~~-~~~~~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~g~~~~i~~~sG~~a~~~a~  110 (385)
T TIGR01825        32 GKEVINLS-SNNYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFKKTEAALVFQSGFNTNQGVL  110 (385)
T ss_pred             CceEEEee-ccCccCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHH
Confidence            46789999 7888898777776554422211111122345444 664 69999999999999888899999987764 77


Q ss_pred             HHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcC----CCceEEEEecCCCCccccccHHHHH
Q 024619           87 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG----PWTKLVWVESPTNPRQQICDIRKIA  162 (265)
Q Consensus        87 ~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~----~~~~~i~~~~~~np~G~~~~l~~i~  162 (265)
                      ..++++||.|++++|.|+++...+    +..|.++..++..|++++++.+.    +++++|++++++|++|.+.|+++|.
T Consensus       111 ~~~~~~gd~vi~~~~~~~~~~~~~----~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~~~~~i~  186 (385)
T TIGR01825       111 SALLRKGDIVLSDELNHASIIDGL----RLTKATKKIYKHADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVAPLPEIV  186 (385)
T ss_pred             HHhCCCCCEEEEEccccHHHHHHH----HhcCCceEEeCCCCHHHHHHHHHhhccCCCeEEEEecCCcCCCCccCHHHHH
Confidence            778999999999999998886433    34677777777778888877664    3688999999999999999999999


Q ss_pred             HHHHHcCCEEEEeCCcCCCCCcC---------CCCCCccEEEeccccccccCCCceeeEEEeechhH
Q 024619          163 EMAHAHGALLLVDNSIMSPVLSR---------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       163 ~~a~~~~~~li~D~~~~~~~~~~---------~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                      ++|++||+++|+||+|+.+.+..         ....+.|+++.|+||++++ +   +|+++.+++.+
T Consensus       187 ~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~---gG~~~~~~~~~  249 (385)
T TIGR01825       187 ELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTLSKAIGV-V---GGYAAGHKELI  249 (385)
T ss_pred             HHHHHhCCEEEEECcccccCcCCCCCccHhhcCCCcCCcEEEEeccHHhhc-C---CCEEecCHHHH
Confidence            99999999999999998664431         1234678999999999953 3   48887665443

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>PRK09064 5-aminolevulinate synthase; Validated

Probab=99.91  E-value=2.3e-23  Score=184.82  Aligned_cols=200  Identities=19%  Similarity=0.145  Sum_probs=145.0

Q ss_pred             eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC--CC-hhHHHHHHHHHhHhCCCceEEecchHHHHH-HH
Q 024619           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS--GN-PTRDALESLLAKLDKADRALCFTSGMAALA-AV   86 (265)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~--g~-~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~   86 (265)
                      .++++|+ +|||+|..++|.+..+.......... ....++.  |. +...++++.+++++|.++.+++++|+++.. ++
T Consensus        46 ~~~~~~~-s~dylgl~~~p~v~~a~~~~~~~~~~-~~~~s~~~~g~~~~~~~l~~~la~~~g~~~~~~~~sG~~an~~ai  123 (407)
T PRK09064         46 REVTVWC-SNDYLGMGQHPKVIEAMIEALDRCGA-GAGGTRNISGTNHYHVELERELADLHGKEAALVFTSGYVSNDATL  123 (407)
T ss_pred             ceEEEEE-CCCCcCCCCCHHHHHHHHHHHHHcCC-CCCCcCcCccCHHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHH
Confidence            5689999 99999999988766654222111111 1112222  33 579999999999999888999999997764 55


Q ss_pred             HHhcC--CCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcC----CCceEEEEecCCCCccccccHHH
Q 024619           87 THLLG--TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG----PWTKLVWVESPTNPRQQICDIRK  160 (265)
Q Consensus        87 ~~~~~--~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~----~~~~~i~~~~~~np~G~~~~l~~  160 (265)
                      ..+..  +++.|+.+...|.+....+    +..+.++..++..|.+++++.+.    +++++|++++++||+|.+.|+++
T Consensus       124 ~~l~~~~~~~~i~~~~~~h~s~~~~~----~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~v~~~~v~s~~G~~~~l~~  199 (407)
T PRK09064        124 STLAKLIPDCVIFSDELNHASMIEGI----RRSRCEKHIFRHNDVAHLEELLAAADPDRPKLIAFESVYSMDGDIAPIAE  199 (407)
T ss_pred             HHHhCCCCCCEEEEeCcchHHHHHHH----HHcCCcEEEECCCCHHHHHHHHHhccCCCCeEEEEeCCCCCCccccCHHH
Confidence            54443  6776766766665554332    44566777777778887777764    46889999999999999999999


Q ss_pred             HHHHHHHcCCEEEEeCCcCCCCCcC---------CCCCCccEEEeccccccccCCCceeeEEEeechhH
Q 024619          161 IAEMAHAHGALLLVDNSIMSPVLSR---------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       161 i~~~a~~~~~~li~D~~~~~~~~~~---------~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                      |.++|+++|+++|+||+|+.|.++.         ....+.|++++||||.++ ..   +|+++++++.+
T Consensus       200 i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g-~~---GG~~~~~~~~~  264 (407)
T PRK09064        200 ICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAFG-VM---GGYIAGSAALV  264 (407)
T ss_pred             HHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEEecchhhh-cc---CceEecCHHHH
Confidence            9999999999999999998665431         111246899999999994 43   38887766443

>PTZ00377 alanine aminotransferase; Provisional

Probab=99.91  E-value=4.1e-23  Score=186.70  Aligned_cols=194  Identities=18%  Similarity=0.222  Sum_probs=141.6

Q ss_pred             CCccCCC-CCh-hHHHHHHHHHhHhCCC---ceEEecchH-HHHH-HHHHhc-CCCCEEEEcCCCCCChHHHHHhhcCCC
Q 024619           46 PYDYTRS-GNP-TRDALESLLAKLDKAD---RALCFTSGM-AALA-AVTHLL-GTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (265)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~~~g~-~al~-~~~~~~-~~g~~viv~~~~~~~~~~~~~~~~~~~  117 (265)
                      ...|++. |.+ +++++++++.+..|.+   +.|++++|+ +++. ++..++ ++||.|++++|+|+.+.    ..++..
T Consensus       108 ~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~~gD~Vlv~~P~y~~y~----~~~~~~  183 (481)
T PTZ00377        108 TGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGDPSDGVMIPIPQYPLYS----AAITLL  183 (481)
T ss_pred             ccCcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhccCCCCEEEECCCCchhHH----HHHHHc
Confidence            4568888 887 5999999998876543   466666665 8886 566777 79999999999999997    445667


Q ss_pred             CeEEEeecCC-------CHHHHHhhcCC------CceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCC
Q 024619          118 GVVVKRVNTC-------DLDEVASAIGP------WTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSP  181 (265)
Q Consensus       118 g~~~~~~~~~-------d~~~l~~~~~~------~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~  181 (265)
                      |.+++.++++       |++++++++.+      +++++++++|+||||.+++   +++|+++|+++|++||+||+|...
T Consensus       184 g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l  263 (481)
T PTZ00377        184 GGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQEN  263 (481)
T ss_pred             CCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhh
Confidence            8888887643       67889888753      7899999999999999987   789999999999999999999753


Q ss_pred             CCc------CC------CCC-----CccEEEeccccccccCCCceeeEEEee--chhHHHHHHHHHHhccCCCChhHHHH
Q 024619          182 VLS------RP------LEL-----GADIVMHSATKFIAGHSDVMAGVLAVK--GERLAKELYFLQNAEGSGLAPFDCWI  242 (265)
Q Consensus       182 ~~~------~~------~~~-----~~di~~~s~sK~~~g~~g~~~G~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (265)
                      .+.      ..      ...     ...+++.|+||.+.+.+|+|+||+++.  +..+.+.+...+.. ....+...+..
T Consensus       264 ~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~li~~l~~~~~~-~~~~~~~~Q~a  342 (481)
T PTZ00377        264 IYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPEVREQIYKLASI-NLCSNVVGQLM  342 (481)
T ss_pred             ccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHHHHHHHHHHhhe-ecCCChHHHHH
Confidence            331      10      111     135899999997657889999999872  33444444444432 22344444443


Q ss_pred             HH
Q 024619          243 CL  244 (265)
Q Consensus       243 ~~  244 (265)
                      +.
T Consensus       343 ~~  344 (481)
T PTZ00377        343 TG  344 (481)
T ss_pred             HH
Confidence            33

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=99.91  E-value=2.7e-23  Score=179.37  Aligned_cols=176  Identities=21%  Similarity=0.239  Sum_probs=127.2

Q ss_pred             HHHHHHHHhHhCCCceEEecchH-HHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhc
Q 024619           58 DALESLLAKLDKADRALCFTSGM-AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAI  136 (265)
Q Consensus        58 ~~l~~~l~~~~g~~~~i~~~~g~-~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~  136 (265)
                      ..+++.+++++|.++ |++++|+ +++..+. .+.+||+|++++|+|+.+.    ..++..|++++.++.++   +++.+
T Consensus        52 ~~Lr~~ia~~~~~~~-I~it~Gs~~al~~~~-~~~~gd~v~v~~P~y~~~~----~~~~~~g~~~~~v~~~~---~~~~~  122 (330)
T PRK05664         52 DGLEAAARAYYGAPQ-LLPVAGSQAAIQALP-RLRAPGRVGVLSPCYAEHA----HAWRRAGHQVRELDEAE---VEAAL  122 (330)
T ss_pred             HHHHHHHHHHhCCCC-EEECcCHHHHHHHHH-HccCCCEEEEcCCChHHHH----HHHHHcCCeEEEechhh---Hhhhh
Confidence            677888888888875 5555555 8887553 4689999999999999997    56678899999998654   44444


Q ss_pred             CCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCC-c---CCCCCCccEEEeccccccccCCCce
Q 024619          137 GPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVL-S---RPLELGADIVMHSATKFIAGHSDVM  209 (265)
Q Consensus       137 ~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~-~---~~~~~~~di~~~s~sK~~~g~~g~~  209 (265)
                       ++++++++++|+||||.+.+   +++|+++|+++|++||+||+|..... .   .....+..++++||||.+ |.+|+|
T Consensus       123 -~~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~~~~~~~~~vi~~~SfSK~~-gl~GlR  200 (330)
T PRK05664        123 -DSLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNTPQHSLAACAHRPGLIVLRSFGKFF-GLAGAR  200 (330)
T ss_pred             -cCCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCCCcccccccccCCCEEEEeeccccc-cCCCcc
Confidence             36788999999999999976   56777788999999999999964322 1   111224569999999999 778899


Q ss_pred             eeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhcc
Q 024619          210 AGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV  247 (265)
Q Consensus       210 ~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  247 (265)
                      +||++++++.+ +.......  ...++...+..+...|
T Consensus       201 iG~~v~~~~l~-~~~~~~~~--~~~~~~~~~~~~~~~L  235 (330)
T PRK05664        201 LGFVLAEPALL-RALAELLG--PWTVSGPTRWLAQAAL  235 (330)
T ss_pred             eEEEEeCHHHH-HHHHHhcC--CCCCCHHHHHHHHHHH
Confidence            99999876544 33332222  2344544444444444

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=99.91  E-value=5.6e-23  Score=182.03  Aligned_cols=200  Identities=20%  Similarity=0.220  Sum_probs=141.4

Q ss_pred             ceeEeeccCCCCCC---CCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHh---CCCceEEecchHH
Q 024619           10 STLLMNFSNEFDPY---GALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLD---KADRALCFTSGMA   81 (265)
Q Consensus        10 ~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~---g~~~~i~~~~g~~   81 (265)
                      +..+++|+ ..++.   ...+++.+.... .. .......+.|.+. |.+ +++++++++.+..   ..+.+++++++++
T Consensus        30 ~~~~i~l~-~g~p~~~~~~~~~~~~~~~~-~~-~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~~~~~~~~i~~t~G~~~  106 (401)
T TIGR01264        30 EKPMIKLS-IGDPTVFGNLPTDPEVMQAM-KD-SLDSGKYNGYAPTVGALSAREAIASYYHNPDGPIEADDVVLCSGCSH  106 (401)
T ss_pred             CCCeeecC-CCCCCCcCCCCCCHHHHHHH-HH-HHhccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHEEECcChHH
Confidence            34678888 54442   222333333322 11 1111223468666 776 4778888776532   2233444444458


Q ss_pred             HHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC-------CCHHHHHhhcCCCceEEEEecCCCCcc
Q 024619           82 ALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPRQ  153 (265)
Q Consensus        82 al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~~~~~~~~i~~~~~~np~G  153 (265)
                      ++. ++..++++||+|++++|+|..+.    ..++..|++++.++.       .|++++++.+.+++++|++++|+||||
T Consensus       107 al~~~~~~l~~~gd~v~i~~P~y~~~~----~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG  182 (401)
T TIGR01264       107 AIEMCIAALANAGQNILVPRPGFPLYE----TLAESMGIEVKLYNLLPDKSWEIDLKQLESLIDEKTAALIVNNPSNPCG  182 (401)
T ss_pred             HHHHHHHHhCCCCCEEEEeCCCChhHH----HHHHHcCCEEEEeecCCccCCCCCHHHHHHHhccCceEEEEcCCCCCCC
Confidence            886 67778899999999999998886    555778888888764       268899888888899999999999999


Q ss_pred             cccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc-----CC--C-CCCccEEEeccccccccCCCceeeEEEeec
Q 024619          154 QICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RP--L-ELGADIVMHSATKFIAGHSDVMAGVLAVKG  217 (265)
Q Consensus       154 ~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~--~-~~~~di~~~s~sK~~~g~~g~~~G~v~~~~  217 (265)
                      .+.+   +++|+++|+++|+++|+||+|....+.     ..  . .....+++.||||.+ +.+|+|+||+++++
T Consensus       183 ~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~-~~~GlRiG~iv~~~  256 (401)
T TIGR01264       183 SVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSSTVPILSCGGLAKRW-LVPGWRLGWIIIHD  256 (401)
T ss_pred             CCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHcCCCCcEEEEccCcccC-CCccceEEEEEecC
Confidence            9975   789999999999999999999743321     11  1 112368999999998 67899999999875

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>PRK05839 hypothetical protein; Provisional

Probab=99.91  E-value=4.9e-23  Score=180.74  Aligned_cols=205  Identities=17%  Similarity=0.162  Sum_probs=141.8

Q ss_pred             ceeEeeccCCCCC-CCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCC--C-ceEEecchH-HH
Q 024619           10 STLLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKA--D-RALCFTSGM-AA   82 (265)
Q Consensus        10 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~--~-~~i~~~~g~-~a   82 (265)
                      +..+++|+ .++. +++  ++.+.... ...   ......|++. |.+ +++++++++++.+|.  + +.|++++|+ ++
T Consensus        23 ~~~~i~l~-~~~p~~~~--~~~~~~a~-~~~---~~~~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~a   95 (374)
T PRK05839         23 EYKGLDLT-IGEPQFET--PKFIQDAL-KNN---AHLLNKYPKSAGEESLREAQRGFFKRRFKIELKENELIPTFGTREV   95 (374)
T ss_pred             CCCeEEcC-CCCCCCCC--CHHHHHHH-HHH---hhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHH
Confidence            45899998 4432 332  22222221 111   1134668877 775 599999999998773  2 567777775 88


Q ss_pred             HH-HHHHhc--CCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCC-----HHHHHhhcCCCceEEEEecCCCCccc
Q 024619           83 LA-AVTHLL--GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCD-----LDEVASAIGPWTKLVWVESPTNPRQQ  154 (265)
Q Consensus        83 l~-~~~~~~--~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d-----~~~l~~~~~~~~~~i~~~~~~np~G~  154 (265)
                      +. ++..++  ++||.|+++.|+|+.+.    ..++..|++++.++.+.     ++.....+ +++++|++++||||||.
T Consensus        96 l~~~~~~~~~~~~gd~vlv~~P~y~~~~----~~~~~~g~~v~~v~~~~~~~~~~d~~~~~~-~~~k~v~i~nP~NPTG~  170 (374)
T PRK05839         96 LFNFPQFVLFDKQNPTIAYPNPFYQIYE----GAAIASRAKVLLMPLTKENDFTPSLNEKEL-QEVDLVILNSPNNPTGR  170 (374)
T ss_pred             HHHHHHHHhcCCCCCEEEECCCCchhhH----HHHHhcCCEEEEeecccccCCcCCcchhhh-ccccEEEEeCCCCCcCc
Confidence            86 445543  57899999999999997    44577899999988641     11111222 46899999999999999


Q ss_pred             ccc---HHHHHHHHHHcCCEEEEeCCcCCCCC----cCC---------CCCCccEEEeccccccccCCCceeeEEEeech
Q 024619          155 ICD---IRKIAEMAHAHGALLLVDNSIMSPVL----SRP---------LELGADIVMHSATKFIAGHSDVMAGVLAVKGE  218 (265)
Q Consensus       155 ~~~---l~~i~~~a~~~~~~li~D~~~~~~~~----~~~---------~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~  218 (265)
                      +.+   +++|+++|+++|++||+||+|+.-..    ...         ...+..+++.||||.+ +.+|+|+||++.+++
T Consensus       171 ~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~-~~~GlRiG~ii~~~~  249 (374)
T PRK05839        171 TLSLEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSISKRS-SAPGLRSGFIAGDAS  249 (374)
T ss_pred             ccCHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEEEecccccc-CCccceeEEEecCHH
Confidence            975   68889999999999999999974221    111         1224679999999998 678999999998765


Q ss_pred             hHHHHHHHHH
Q 024619          219 RLAKELYFLQ  228 (265)
Q Consensus       219 ~~~~~~~~~~  228 (265)
                      .+ +.+....
T Consensus       250 ~~-~~~~~~~  258 (374)
T PRK05839        250 IL-KKYKAYR  258 (374)
T ss_pred             HH-HHHHHHH
Confidence            44 4343333

>PRK08363 alanine aminotransferase; Validated

Probab=99.91  E-value=1e-22  Score=180.17  Aligned_cols=165  Identities=21%  Similarity=0.218  Sum_probs=127.8

Q ss_pred             CCccCCC-CCh-hHHHHHHHHHhHhCC--C-ceEEecch-HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC
Q 024619           46 PYDYTRS-GNP-TRDALESLLAKLDKA--D-RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (265)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~--~-~~i~~~~g-~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g  118 (265)
                      ...|++. |.+ +++++++++.+.+|.  + +.+++++| ++++. ++..++++||.|++++|+|+.+.    ..++..|
T Consensus        63 ~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~----~~~~~~g  138 (398)
T PRK08363         63 HNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILIPGPSYPPYT----GLVKFYG  138 (398)
T ss_pred             CCCCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCCcchH----HHHHHcC
Confidence            3467655 765 588888888877653  2 34555555 58886 66778999999999999999996    4446677


Q ss_pred             eEEEee-cC------CCHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc----
Q 024619          119 VVVKRV-NT------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----  184 (265)
Q Consensus       119 ~~~~~~-~~------~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~----  184 (265)
                      .+++.+ +.      .|++++++.+.+++++|++++|+||||.+.+   +++|+++|+++|+++|+||+|+...+.    
T Consensus       139 ~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~  218 (398)
T PRK08363        139 GVPVEYRTIEEEGWQPDIDDIRKKITEKTKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHV  218 (398)
T ss_pred             CEEEEeccccccCCcCCHHHHHhhCCcceEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCccc
Confidence            777766 32      3688899888888999999999999999976   899999999999999999999743221    


Q ss_pred             ---CCCCCCccEEEeccccccccCCCceeeEEEe
Q 024619          185 ---RPLELGADIVMHSATKFIAGHSDVMAGVLAV  215 (265)
Q Consensus       185 ---~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~  215 (265)
                         ........+++.||||++ +.+|+|.||+++
T Consensus       219 ~~~~~~~~~~vi~~~SfSK~~-~~~GlRiG~~~~  251 (398)
T PRK08363        219 SPGSLTKDVPVIVMNGLSKVY-FATGWRLGYIYF  251 (398)
T ss_pred             CHHHcCcCCcEEEEecchhcc-CCccceEEEEEE
Confidence               111223578899999998 567899999997

>PTZ00376 aspartate aminotransferase; Provisional

Probab=99.91  E-value=5.9e-23  Score=181.97  Aligned_cols=165  Identities=17%  Similarity=0.139  Sum_probs=126.4

Q ss_pred             CCCccCCC-CCh-hHHHHHHHHHhHhC----CCceEE--ecchHHHHHH-H---HHhcCCCCEEEEcCCCCCChHHHHHh
Q 024619           45 GPYDYTRS-GNP-TRDALESLLAKLDK----ADRALC--FTSGMAALAA-V---THLLGTGEEIVAGDDLYGGTDRLLSR  112 (265)
Q Consensus        45 ~~~~y~~~-g~~-~~~~l~~~l~~~~g----~~~~i~--~~~g~~al~~-~---~~~~~~g~~viv~~~~~~~~~~~~~~  112 (265)
                      ....|++. |.+ +|+++.+++.+..+    .+++++  +.++++|+.. +   ..++++||+|++++|+|+.+.    .
T Consensus        64 ~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~----~  139 (404)
T PTZ00376         64 LDKEYLPIEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHV----N  139 (404)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHhcCCCccccccCeEEEeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHH----H
Confidence            34779888 887 59999998876543    233332  4444577643 2   366899999999999999997    5


Q ss_pred             hcCCCCeEEEeecC---C----CHHHHHhhcC---CCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcC
Q 024619          113 VTPKTGVVVKRVNT---C----DLDEVASAIG---PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIM  179 (265)
Q Consensus       113 ~~~~~g~~~~~~~~---~----d~~~l~~~~~---~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~  179 (265)
                      .++..|++++.+++   +    |++.+++++.   ++++++++++||||||.+.+   +++|+++|++||++||+||+|.
T Consensus       140 ~~~~~G~~~~~v~l~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~  219 (404)
T PTZ00376        140 IFKSAGLNVKEYRYYDPKTKGLDFDGMLEDLRTAPNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQ  219 (404)
T ss_pred             HHHHcCCceeeccccCcccCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhc
Confidence            66788999999987   2    6888888874   44678888999999999975   6888999999999999999997


Q ss_pred             CCCCcC-----------CCCCCccEEEeccccccccCCCceeeEEE
Q 024619          180 SPVLSR-----------PLELGADIVMHSATKFIAGHSDVMAGVLA  214 (265)
Q Consensus       180 ~~~~~~-----------~~~~~~di~~~s~sK~~~g~~g~~~G~v~  214 (265)
                      ...+..           ....+..++++||||.+ +.+|+|.||++
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~-~~~GlRvG~~~  264 (404)
T PTZ00376        220 GFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNM-GLYGERIGALH  264 (404)
T ss_pred             CccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcc-cccccccceEE
Confidence            444321           11123579999999999 77899999984

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=99.91  E-value=1.3e-22  Score=177.07  Aligned_cols=221  Identities=21%  Similarity=0.266  Sum_probs=150.4

Q ss_pred             ceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCCC----ceEEecchH-HH
Q 024619           10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKAD----RALCFTSGM-AA   82 (265)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~~----~~i~~~~g~-~a   82 (265)
                      ...+++|+ .++...+. +|.+.... ...  .  ....|++. |.+ +++++++++.+.+|.+    +.+++++|+ ++
T Consensus        20 ~~~~i~l~-~~~p~~~~-~~~~~~~~-~~~--~--~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~   92 (357)
T TIGR03539        20 PDGIVDLS-VGTPVDPV-PPLIRAAL-AAA--A--DAPGYPQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKEL   92 (357)
T ss_pred             CCCeEEcc-CCCCCCCC-CHHHHHHH-HHH--H--hhCCCCcccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHH
Confidence            45689999 55443222 23333321 111  1  23568776 776 5999999998876532    566677765 88


Q ss_pred             HHH-HHHh-cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCcccccc---
Q 024619           83 LAA-VTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD---  157 (265)
Q Consensus        83 l~~-~~~~-~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---  157 (265)
                      +.. +..+ +++||.|++++|+|+.+.    ..++..|.+++.++  +++++.   .+++++|++++|+||||.+.+   
T Consensus        93 i~~~~~~l~~~~gd~Vl~~~p~y~~~~----~~~~~~g~~~~~v~--~~~~l~---~~~~~~v~~~~p~NPtG~~~~~~~  163 (357)
T TIGR03539        93 VAWLPTLLGLGPGDTVVIPELAYPTYE----VGALLAGATPVAAD--DPTELD---PVGPDLIWLNSPGNPTGRVLSVDE  163 (357)
T ss_pred             HHHHHHHHcCCCCCEEEECCCCcHHHH----HHHHhcCCEEeccC--ChhhcC---ccCccEEEEeCCCCCcCccCCHHH
Confidence            864 4555 699999999999998886    33466788888775  444433   357899999999999999975   


Q ss_pred             HHHHHHHHHHcCCEEEEeCCcCCCCCc-------CC----CCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHH
Q 024619          158 IRKIAEMAHAHGALLLVDNSIMSPVLS-------RP----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF  226 (265)
Q Consensus       158 l~~i~~~a~~~~~~li~D~~~~~~~~~-------~~----~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~  226 (265)
                      +++|+++|+++|+++|+||+|+.-.+.       .+    ...+..++++||||.+ +.+|+|+|+++++++.+ +....
T Consensus       164 ~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-~~~G~R~G~~i~~~~~~-~~~~~  241 (357)
T TIGR03539       164 LRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRS-NLAGYRAGFVAGDPALV-AELLT  241 (357)
T ss_pred             HHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEecccccc-CCCceeEEEEecCHHHH-HHHHH
Confidence            678999999999999999999632211       01    1224579999999999 56789999998766544 44444


Q ss_pred             HHHhccCCCChhHHHHHHhccC
Q 024619          227 LQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      .+.......+...+..+...++
T Consensus       242 ~~~~~~~~~~~~~q~~~~~~l~  263 (357)
T TIGR03539       242 VRKHAGLMVPAPVQAAMVAALG  263 (357)
T ss_pred             HHhhcccCCCHHHHHHHHHHcC
Confidence            4444444455555444444443

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=99.91  E-value=4.6e-23  Score=182.83  Aligned_cols=226  Identities=20%  Similarity=0.166  Sum_probs=156.4

Q ss_pred             eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC--CC-hhHHHHHHHHHhHhCCCceEEecchHHHHH-HH
Q 024619           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS--GN-PTRDALESLLAKLDKADRALCFTSGMAALA-AV   86 (265)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~--g~-~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~   86 (265)
                      .++++|+ +|||+|+.++|.+..+..........+ ..-++.  |. +..+++++.+++++|.+..++++||++|+. ++
T Consensus        45 ~~~~~~~-sn~ylgl~~~p~v~~a~~~~~~~~~~~-~~~s~~~~~~~~~~~~le~~la~~~g~~~~~~~~SG~~An~~ai  122 (406)
T PRK13393         45 REVTVWC-SNDYLGMGQHPAVLAAMHEALDTCGAG-AGGTRNISGTNHYHVLLEAELADLHGKEAALLFTSGYVSNWAAL  122 (406)
T ss_pred             ccEEEee-cccccCCCCCHHHHHHHHHHHHHcCCC-CcccccccCChHHHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHH
Confidence            5799999 999999998886665542221111111 111222  44 468999999999999999999999998875 44


Q ss_pred             HHhcC--CCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcC----CCceEEEEecCCCCccccccHHH
Q 024619           87 THLLG--TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG----PWTKLVWVESPTNPRQQICDIRK  160 (265)
Q Consensus        87 ~~~~~--~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~----~~~~~i~~~~~~np~G~~~~l~~  160 (265)
                      ..+..  +|+.|+.+...|++....+    +..|.+++.++..|++++++.+.    +++++|++++++|++|.+.|+++
T Consensus       123 ~~l~~~~~g~~I~~~~~~H~s~~~~~----~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~~G~~~~l~~  198 (406)
T PRK13393        123 STLGSRLPGCVILSDELNHASMIEGI----RHSRAEKRIFRHNDPADLERKLSDLDPHRPKLVAFESVYSMDGDIAPIAE  198 (406)
T ss_pred             HHhhcCCCCCEEEEccchhHHHHHHH----HHcCCeEEEeCCCCHHHHHHHHHhccCCCCEEEEEcCCCCCCCchhCHHH
Confidence            44544  6887777777777666444    34567777787778777776653    36789999999999999999999


Q ss_pred             HHHHHHHcCCEEEEeCCcCCCCCcCC---------CCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHh-
Q 024619          161 IAEMAHAHGALLLVDNSIMSPVLSRP---------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA-  230 (265)
Q Consensus       161 i~~~a~~~~~~li~D~~~~~~~~~~~---------~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~-  230 (265)
                      |.++|+++|+++++||+|+.|.++..         ...+.|++++|++|.++.+    +|+++++++ +.+.+...... 
T Consensus       199 i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~~----GG~~~~~~~-~~~~l~~~~~~~  273 (406)
T PRK13393        199 ICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGVM----GGYITGSAA-LCDFIRSFASGF  273 (406)
T ss_pred             HHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhccc----CceeeCCHH-HHHHHHHhCcCc
Confidence            99999999999999999986665311         1123589999999999543    478876554 33433332221 


Q ss_pred             -ccCCCChhHHHHHHhcc
Q 024619          231 -EGSGLAPFDCWICLRGV  247 (265)
Q Consensus       231 -~~~~~~~~~~~~~~~~l  247 (265)
                       .....++..++.+...+
T Consensus       274 ~~t~~~~p~~~aa~~aaL  291 (406)
T PRK13393        274 IFTTSLPPAVAAGALASV  291 (406)
T ss_pred             eecCccCHHHHHHHHHHH
Confidence             23344554444433333

>PLN02822 serine palmitoyltransferase

Probab=99.91  E-value=3.3e-23  Score=186.55  Aligned_cols=200  Identities=15%  Similarity=0.176  Sum_probs=150.8

Q ss_pred             ceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccC--CC--CC-hhHHHHHHHHHhHhCCCceEEecchHHHH-
Q 024619           10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYT--RS--GN-PTRDALESLLAKLDKADRALCFTSGMAAL-   83 (265)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~--~~--g~-~~~~~l~~~l~~~~g~~~~i~~~~g~~al-   83 (265)
                      +..+++|+ +++|+|...+|.+..........   .+..|+  +.  |. +...++++.++++++.++.+++++|..++ 
T Consensus       108 G~~~id~~-s~~~lgl~~~~~i~ea~~~al~~---~G~g~~g~r~~yg~~~~~~~Lee~La~~~~~~~~i~~s~G~~a~~  183 (481)
T PLN02822        108 GKDVVNFA-SANYLGLIGNEKIKESCTSALEK---YGVGSCGPRGFYGTIDVHLDCETKIAKFLGTPDSILYSYGLSTIF  183 (481)
T ss_pred             CceEEEeE-CCCcCCCCCCHHHHHHHHHHHHH---hCCCCcccCccccCHHHHHHHHHHHHHHhCCCCEEEECCHHHHHH
Confidence            46799999 99999999888776654332211   122222  22  33 46999999999999998889999887665 


Q ss_pred             HHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcC---------CCc-eEEEEecCCCCcc
Q 024619           84 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG---------PWT-KLVWVESPTNPRQ  153 (265)
Q Consensus        84 ~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~---------~~~-~~i~~~~~~np~G  153 (265)
                      .++.+++++||.|+++...|.++.    ..++..+.+++.++..|.++++..+.         +++ ++|+++++++++|
T Consensus       184 sai~a~~~~gd~Ii~d~~~H~s~~----~~~~ls~~~~~~~~~nd~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G  259 (481)
T PLN02822        184 SVIPAFCKKGDIIVADEGVHWGIQ----NGLYLSRSTIVYFKHNDMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSG  259 (481)
T ss_pred             HHHHHhCCCCCEEEEeCCccHHHH----HHHHHcCCeEEEECCCCHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCC
Confidence            578889999999998877665554    23345577888998887766655442         234 7999999999999


Q ss_pred             ccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCC-------C---CCCccEEEeccccccccCCCceeeEEEeechhHH
Q 024619          154 QICDIRKIAEMAHAHGALLLVDNSIMSPVLSRP-------L---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA  221 (265)
Q Consensus       154 ~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~-------~---~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~  221 (265)
                      .+.|+++|+++|++||+++|+||+|+.+.++..       .   ..++|++++||+|.++ ..   +|+++++++.+.
T Consensus       260 ~i~~L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKalg-~~---GG~i~g~~~ii~  333 (481)
T PLN02822        260 QIAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALA-TE---GGFCTGSARVVD  333 (481)
T ss_pred             CccCHHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhhh-hC---CeEEEcCHHHHH
Confidence            999999999999999999999999997766421       1   1257899999999994 44   388887765443

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=99.90  E-value=1.9e-23  Score=183.10  Aligned_cols=195  Identities=16%  Similarity=0.167  Sum_probs=143.9

Q ss_pred             CCccCCCCCh-hHHHHHHHHHhHhCCC---ceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCe
Q 024619           46 PYDYTRSGNP-TRDALESLLAKLDKAD---RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV  119 (265)
Q Consensus        46 ~~~y~~~g~~-~~~~l~~~l~~~~g~~---~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~  119 (265)
                      ...|+..|.+ +++++++++.+.+|.+   +.+++++|+ +++. ++..++++||.|+++.|+|+.+.    ..++..|.
T Consensus        59 ~~~Y~~~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~~~~~~~~~gd~v~v~~P~y~~~~----~~~~~~g~  134 (368)
T PRK03317         59 LNRYPDRDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQLLQAFGGPGRTALGFVPSYSMHP----IIARGTHT  134 (368)
T ss_pred             hccCCCCchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHHHHHHhcCCCCEEEEeCCChHHHH----HHHHhcCC
Confidence            3567655765 5888888888776542   567777776 8886 66778899999999999999886    44567788


Q ss_pred             EEEeecCC-----CHHHHHhhcC-CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc---CCC---
Q 024619          120 VVKRVNTC-----DLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS---RPL---  187 (265)
Q Consensus       120 ~~~~~~~~-----d~~~l~~~~~-~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~---~~~---  187 (265)
                      +++.++..     |++++++++. +++++|++++|+||||.+.+.+++.++++..++++|+||+|+.....   ...   
T Consensus       135 ~~~~~~~~~~~~~d~~~l~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~  214 (368)
T PRK03317        135 EWVEGPRAADFTLDVDAAVAAIAEHRPDVVFLTSPNNPTGTALPLDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLL  214 (368)
T ss_pred             eeEEcccCCCCCCCHHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHH
Confidence            88877632     7899998886 57889999999999999999999999999999999999999743211   111   


Q ss_pred             -CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619          188 -ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       188 -~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                       ..+..+++.||||.+ |.+|+|+|+++++++.+ +.+....  .....++..+..+...++
T Consensus       215 ~~~~~~i~~~SfSK~~-g~~GlRiG~~~~~~~~~-~~l~~~~--~~~~~s~~~~~a~~~~l~  272 (368)
T PRK03317        215 PEYPRLVVSRTMSKAF-AFAGGRLGYLAAAPAVV-DALRLVR--LPYHLSAVTQAAARAALR  272 (368)
T ss_pred             HhCCCEEEEEechhhh-ccchhhhhhhhCCHHHH-HHHHhcC--CCCCCCHHHHHHHHHHhh
Confidence             123468999999999 55689999999876544 3333222  234455555555444444

>PRK07568 aspartate aminotransferase; Provisional

Probab=99.90  E-value=3.2e-22  Score=177.00  Aligned_cols=173  Identities=25%  Similarity=0.363  Sum_probs=130.2

Q ss_pred             CCccCCC-CCh-hHHHHHHHHHhHhC----CCceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC
Q 024619           46 PYDYTRS-GNP-TRDALESLLAKLDK----ADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (265)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g----~~~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g  118 (265)
                      ...|.+. |.+ +++++++++.. .|    .+++++++++++++. ++..++++||+|++++|+|+.+.    ..++..|
T Consensus        59 ~~~Y~~~~g~~~lr~~ia~~~~~-~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~----~~~~~~g  133 (397)
T PRK07568         59 VLAYSHSQGIPELREAFAKYYKK-WGIDVEPDEILITNGGSEAILFAMMAICDPGDEILVPEPFYANYN----GFATSAG  133 (397)
T ss_pred             CcCcCCCCCCHHHHHHHHHHHHH-hCCCCCcceEEEcCChHHHHHHHHHHhcCCCCEEEEecCCCccHH----HHHHHcC
Confidence            4567776 775 47888877763 32    234444445568886 66677899999999999998876    4456778


Q ss_pred             eEEEeecCC--------CHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc---
Q 024619          119 VVVKRVNTC--------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS---  184 (265)
Q Consensus       119 ~~~~~~~~~--------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~---  184 (265)
                      ++++.++.+        +++++++++.+++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|+...+.   
T Consensus       134 ~~~~~v~~~~~~g~~~~~~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~  213 (397)
T PRK07568        134 VKIVPVTTKIEEGFHLPSKEEIEKLITPKTKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLK  213 (397)
T ss_pred             CEEEEeecCcccCCCCCCHHHHHHhcCccceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCC
Confidence            888887752        468898888888999999999999999974   789999999999999999999743221   


Q ss_pred             --CCC---C-CCccEEEeccccccccCCCceeeEEEeechhHHHHH
Q 024619          185 --RPL---E-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL  224 (265)
Q Consensus       185 --~~~---~-~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~  224 (265)
                        ...   . .+..+++.|+||.+ +.+|+|+|++++++..+.+..
T Consensus       214 ~~s~~~~~~~~~~~i~~~S~SK~~-~~~G~R~G~~~~~~~~~~~~~  258 (397)
T PRK07568        214 YTSALSLEGLEDRVIIIDSVSKRY-SACGARIGCLISKNKELIAAA  258 (397)
T ss_pred             ccChhhcCCCcCCEEEEecchhhc-cCCCcceEEEecCCHHHHHHH
Confidence              111   1 24569999999999 667899999988654554433

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=99.90  E-value=2e-23  Score=182.31  Aligned_cols=184  Identities=19%  Similarity=0.279  Sum_probs=136.6

Q ss_pred             HHHHHHHHHhHhCCC-ceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC----CH
Q 024619           57 RDALESLLAKLDKAD-RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DL  129 (265)
Q Consensus        57 ~~~l~~~l~~~~g~~-~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----d~  129 (265)
                      ..++++.++++++.+ +.+++++|+ +++. ++..++++||.|++++|+|+.+.    ..++..|.+++.++.+    |+
T Consensus        66 ~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~v~~~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~d~  141 (359)
T PRK03158         66 APELRTKVAKHLGVDEEQLLFGAGLDEVIQMISRALLNPGTNTVMAEPTFSQYR----HNAIIEGAEVREVPLKDGGHDL  141 (359)
T ss_pred             HHHHHHHHHHHhCCCHHHEEECCCHHHHHHHHHHHHhCCCCEEEEcCCCHHHHH----HHHHHcCCeEEEEecCCCCcCH
Confidence            455666666677765 466666665 8886 56678899999999999999886    4446678888888754    78


Q ss_pred             HHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHH--cCCEEEEeCCcCCCCCc----CC----CCCCccEEEeccc
Q 024619          130 DEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA--HGALLLVDNSIMSPVLS----RP----LELGADIVMHSAT  199 (265)
Q Consensus       130 ~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~--~~~~li~D~~~~~~~~~----~~----~~~~~di~~~s~s  199 (265)
                      +++++.+.++++++++++|+||||.+.+.+++.++++.  +|+++|+||+|......    ..    ...+.++++.|||
T Consensus       142 ~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~S  221 (359)
T PRK03158        142 EAMLKAIDEQTKIVWICNPNNPTGTYVNHEELLSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFS  221 (359)
T ss_pred             HHHHHhcCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEech
Confidence            99998888889999999999999999999998888887  59999999999754332    11    1235679999999


Q ss_pred             cccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619          200 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       200 K~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      |.+ |.+|+|+||++++++.+ +.+.....  ....+...+..+...++
T Consensus       222 K~~-g~~GlRiG~~v~~~~~~-~~~~~~~~--~~~~~~~~q~~~~~~l~  266 (359)
T PRK03158        222 KAY-GLAALRVGYGIASEELI-EKLNIARP--PFNTTRIAQYAAIAALE  266 (359)
T ss_pred             Hhh-cCcchhhehhcCCHHHH-HHHHHhcC--CCCCCHHHHHHHHHHhc
Confidence            999 67889999999877554 33333222  23455555555444444

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=99.90  E-value=3.1e-22  Score=178.80  Aligned_cols=172  Identities=19%  Similarity=0.259  Sum_probs=132.4

Q ss_pred             cCCC-CCh-hHHHHHHHHHhHhCC----C-ceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCe
Q 024619           49 YTRS-GNP-TRDALESLLAKLDKA----D-RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV  119 (265)
Q Consensus        49 y~~~-g~~-~~~~l~~~l~~~~g~----~-~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~  119 (265)
                      |... |.+ +++++++++.+.+|.    + +.|++++|+ +++. ++..+++|||.|+++.|.|+.+...+   ....|+
T Consensus        91 y~~~~G~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~~l~~pGD~Vlv~~P~Y~~f~~~~---~~~~g~  167 (447)
T PLN02607         91 FQDYHGLKSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILADPGDALLVPTPYYPGFDRDL---RWRTGV  167 (447)
T ss_pred             cCCCcchHHHHHHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHH---HhcCCc
Confidence            5555 776 599999999987662    2 466677775 8886 66778999999999999999997433   224678


Q ss_pred             EEEeecCC-------CHHHHHhhcC------CCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCC
Q 024619          120 VVKRVNTC-------DLDEVASAIG------PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVL  183 (265)
Q Consensus       120 ~~~~~~~~-------d~~~l~~~~~------~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~  183 (265)
                      +++.++.+       |++++++++.      .++++|++++|+||||.+++   +++|+++|+++|+.+|+||+|+...+
T Consensus       168 ~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f  247 (447)
T PLN02607        168 KIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVF  247 (447)
T ss_pred             EEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEecccccccc
Confidence            88887643       6788887775      37899999999999999976   78999999999999999999985433


Q ss_pred             cC-----C------C---C-CCccEEEeccccccccCCCceeeEEEeechhHHHHH
Q 024619          184 SR-----P------L---E-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL  224 (265)
Q Consensus       184 ~~-----~------~---~-~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~  224 (265)
                      ..     .      .   . .+..+++.|+||.| |.+|+|+|+++..++.+....
T Consensus       248 ~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~f-g~~GlRvG~ivs~n~~l~~~~  302 (447)
T PLN02607        248 SASEFVSVAEIVEARGYKGVAERVHIVYSLSKDL-GLPGFRVGTIYSYNDKVVTTA  302 (447)
T ss_pred             CCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcC-CCCcceEEEEEEcCHHHHHHH
Confidence            21     0      0   1 24568999999999 668899999998655554433

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=99.90  E-value=2.9e-23  Score=182.49  Aligned_cols=182  Identities=16%  Similarity=0.185  Sum_probs=136.5

Q ss_pred             HHHHHHHHHhHhCCC-ceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-----C
Q 024619           57 RDALESLLAKLDKAD-RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----D  128 (265)
Q Consensus        57 ~~~l~~~l~~~~g~~-~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----d  128 (265)
                      ..++++.+++++|.+ +.+++++|+ +++. ++..++++||+|++++|+|+.+.    ..++..|++++.++.+     |
T Consensus        88 ~~~lr~~ia~~~~~~~~~I~~t~Ga~~~i~~~~~~~~~~gd~Vlv~~P~y~~y~----~~~~~~g~~~~~v~~~~~~~~d  163 (380)
T PLN03026         88 SRRLRAALAEDSGLESENILVGCGADELIDLLMRCVLDPGDKIIDCPPTFGMYV----FDAAVNGAEVIKVPRTPDFSLD  163 (380)
T ss_pred             HHHHHHHHHHHhCcChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHH----HHHHHcCCEEEEeecCCCCCcC
Confidence            567888888888866 567777776 8886 56677899999999999998775    4456689999888753     6


Q ss_pred             HHHHHhhc-CCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-----CCCCCCccEEEecccccc
Q 024619          129 LDEVASAI-GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLELGADIVMHSATKFI  202 (265)
Q Consensus       129 ~~~l~~~~-~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~~~~~~di~~~s~sK~~  202 (265)
                      ++++++++ .+++++|++++|+||||.+.+.+++.++++.. +++|+||+|......     .....+..+++.||||.+
T Consensus       164 ~~~l~~~~~~~~~~~v~l~~P~NPTG~~~~~~~l~~l~~~~-~~vi~DeaY~~~~~~~~~~~~~~~~~~viv~~SfSK~~  242 (380)
T PLN03026        164 VPRIVEAVETHKPKLLFLTSPNNPDGSIISDDDLLKILELP-ILVVLDEAYIEFSTQESRMKWVKKYDNLIVLRTFSKRA  242 (380)
T ss_pred             HHHHHHHHhccCCcEEEEeCCCCCCCCCCCHHHHHHHHhcC-CEEEEECcchhhcCCcchHHHHHhCCCEEEEecchHhh
Confidence            88999888 67899999999999999999999999999865 899999999633211     111235679999999999


Q ss_pred             ccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhcc
Q 024619          203 AGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV  247 (265)
Q Consensus       203 ~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  247 (265)
                       |.+|+|.||++++++.+ +.+...+.  ...++......+...|
T Consensus       243 -glaGlRiGy~~~~~~~i-~~l~~~~~--~~~~~~~~q~aa~~aL  283 (380)
T PLN03026        243 -GLAGLRVGYGAFPLSII-EYLWRAKQ--PYNVSVAAEVAACAAL  283 (380)
T ss_pred             -cCccccceeeecCHHHH-HHHHHhcC--CCCCCHHHHHHHHHHh
Confidence             78899999999877554 33332222  2344544444444444

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=99.90  E-value=2e-22  Score=178.51  Aligned_cols=169  Identities=18%  Similarity=0.294  Sum_probs=123.4

Q ss_pred             CCccCCC-CCh-hHHHHHHHHHhH-hCCCceEEecchH-HHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCe--
Q 024619           46 PYDYTRS-GNP-TRDALESLLAKL-DKADRALCFTSGM-AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV--  119 (265)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~-~g~~~~i~~~~g~-~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~--  119 (265)
                      ...|.+. |.+ +++++++++.+. ... +.|++++|+ +++..+..++.+||+|++++|+|+.+.    ..++..|+  
T Consensus        68 ~~~Y~p~~g~~~lr~aia~~~~~~~~~~-d~I~it~Ga~~al~~l~~l~~~gd~Vlv~~P~y~~~~----~~~~~~g~~~  142 (402)
T TIGR03542        68 FRGYGPEQGYPFLREAIAENDYRGRIDP-EEIFISDGAKCDVFRLQSLFGSDNTVAVQDPVYPAYV----DSNVMAGRAG  142 (402)
T ss_pred             ccCCCCCCCCHHHHHHHHHHHHhcCCCH-HHEEECCCcHHHHHHHHHhcCCCCEEEEeCCCCcchH----HHHHHcCCcc
Confidence            3568666 776 488888765332 233 456666665 888766777889999999999999997    44466677  


Q ss_pred             ---------EEEeecCCCHHHHHhhc--CCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc-
Q 024619          120 ---------VVKRVNTCDLDEVASAI--GPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-  184 (265)
Q Consensus       120 ---------~~~~~~~~d~~~l~~~~--~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~-  184 (265)
                               +++.++.+..+.+...+  .+++++|++++|+||||.+.+   +++|+++|+++|++||+||+|+..... 
T Consensus       143 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~  222 (402)
T TIGR03542       143 VLDDDGRYSKITYLPCTKENNFIPDLPEEPKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDP  222 (402)
T ss_pred             ccccccccceEEEeecchhhCCCCCccccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCC
Confidence                     88877754222222112  257899999999999999987   789999999999999999999743321 


Q ss_pred             ---CCC-----CCCccEEEeccccccccCCCceeeEEEeechhH
Q 024619          185 ---RPL-----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       185 ---~~~-----~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                         .+.     ..+..++++||||.+ |.+|+|.||++++++.+
T Consensus       223 ~~~~~~~~~~~~~~~vi~~~SfSK~~-g~pGlRiG~~i~~~~l~  265 (402)
T TIGR03542       223 SLPHSIFEIPGAKECAIEFRSFSKTA-GFTGVRLGWTVVPKELT  265 (402)
T ss_pred             CCCcchhhCCCCcccEEEEecCcccc-CCCCcceEEEEecHHHh
Confidence               111     123568899999999 67889999999987654

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=99.90  E-value=5.3e-23  Score=179.07  Aligned_cols=183  Identities=16%  Similarity=0.226  Sum_probs=136.8

Q ss_pred             HHHHHHHHHhHhCCC-ceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-----C
Q 024619           57 RDALESLLAKLDKAD-RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----D  128 (265)
Q Consensus        57 ~~~l~~~l~~~~g~~-~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----d  128 (265)
                      ..++++.++++++.+ +.+++++|+ +++. ++..++++||+|++++|+|+.+.    ..++..|.+++.++.+     |
T Consensus        61 ~~~lr~~ia~~~~~~~~~i~it~G~~~~l~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~d  136 (351)
T PRK14807         61 AEKLREELARYCSVVPTNIFVGNGSDEIIHLIMLAFINKGDVVIYPHPSFAMYS----VYSKIAGAVEIPVKLKEDYTYD  136 (351)
T ss_pred             HHHHHHHHHHHhCCCcccEEEecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHH----HHHHHcCCeEEEeecCCCCCCC
Confidence            467778888888875 566777776 7776 66778899999999999998775    4557788898888753     6


Q ss_pred             HHHHHhhcCC-CceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc---C-CCCCCccEEEeccccccc
Q 024619          129 LDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS---R-PLELGADIVMHSATKFIA  203 (265)
Q Consensus       129 ~~~l~~~~~~-~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~---~-~~~~~~di~~~s~sK~~~  203 (265)
                      ++++++++.+ ++++|++++|+||||.+.+.+++.+++++++.++|+||+|....-.   . ....+..++++||||.+ 
T Consensus       137 ~~~l~~~~~~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~ivDe~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~-  215 (351)
T PRK14807        137 VGSFIKVIEKYQPKLVFLCNPNNPTGSVIEREDIIKIIEKSRGIVVVDEAYFEFYGNTIVDVINEFENLIVLRTLSKAF-  215 (351)
T ss_pred             HHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEeCcchhhcccchHHHhhhCCCEEEEecchHhc-
Confidence            8899998874 8999999999999999999999999999988999999999632111   1 11235679999999999 


Q ss_pred             cCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhcc
Q 024619          204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV  247 (265)
Q Consensus       204 g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  247 (265)
                      |.+|+|.||++.+++.+ +.+...+.  ....+...+..+.+.+
T Consensus       216 ~~~GlRiG~~v~~~~~~-~~~~~~~~--~~~~~~~~q~~~~~~l  256 (351)
T PRK14807        216 GLAGLRVGYAVANENIL-KYLNLVKS--PYNINSLSQVIALKVL  256 (351)
T ss_pred             ccchhceeeeecCHHHH-HHHHHccC--CCCcCHHHHHHHHHHH
Confidence            77899999999866544 43333222  2334444444443333

>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]

Probab=99.90  E-value=8.3e-23  Score=170.30  Aligned_cols=201  Identities=20%  Similarity=0.211  Sum_probs=155.5

Q ss_pred             eEeeccCCCCC-CCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhC----CCceEEecchHHHHH
Q 024619           12 LLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDK----ADRALCFTSGMAALA   84 (265)
Q Consensus        12 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g----~~~~i~~~~g~~al~   84 (265)
                      ++|.++ ..|. ....-+....+.++-.+....+..++|+++ |.+ .|+++++++.+-..    +++++++++..+|+.
T Consensus        62 ~iipl~-~GDPsv~~~~~ts~~a~~Av~~al~Sgk~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe  140 (447)
T KOG0259|consen   62 PILPLG-HGDPSVYPCFRTSQEAEQAVVDALRSGKGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIE  140 (447)
T ss_pred             eeccCC-CCCCCccccccCCHHHHHHHHHHHhcCCCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHH
Confidence            777777 4443 222222333333333344456778899999 886 49999888765543    345555555569997


Q ss_pred             -HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-------CHHHHHhhcCCCceEEEEecCCCCccccc
Q 024619           85 -AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQIC  156 (265)
Q Consensus        85 -~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~~~~~~~~i~~~~~~np~G~~~  156 (265)
                       ++.++.+||..|+++.|+|+-|.    ..++..|+++++.++.       |++.++.+++++|.++++.+|+||+|.++
T Consensus       141 ~~i~~LA~p~aNILlPrPGfp~Y~----~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~AivviNP~NPcGnVy  216 (447)
T KOG0259|consen  141 LAISSLANPGANILLPRPGFPLYD----TRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVINPNNPCGNVY  216 (447)
T ss_pred             HHHHHhcCCCCceecCCCCCchHH----HhhhhcCceeEeecccCcccceechHHHHHhhccCeeEEEEeCCCCCCcccc
Confidence             78888999999999999999996    6778899999999853       89999999999999999999999999996


Q ss_pred             ---cHHHHHHHHHHcCCEEEEeCCcCCCCCcC----CC----CCCccEEEeccccccccCCCceeeEEEeech
Q 024619          157 ---DIRKIAEMAHAHGALLLVDNSIMSPVLSR----PL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGE  218 (265)
Q Consensus       157 ---~l~~i~~~a~~~~~~li~D~~~~~~~~~~----~~----~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~  218 (265)
                         .|++|++.|+++++++|.||+|+...+++    ++    ..-..+.++|.||-|. -||+|.||++..+.
T Consensus       217 s~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVitlggisKrW~-VPGWRlGWi~~hD~  288 (447)
T KOG0259|consen  217 SEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVITLGGISKRWI-VPGWRLGWIALHDP  288 (447)
T ss_pred             cHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCceEeecccccccc-cCCceeeeEEEecc
Confidence               48999999999999999999998666541    11    1235799999999774 46899999998874

>PRK09265 aminotransferase AlaT; Validated

Probab=99.90  E-value=3e-22  Score=177.50  Aligned_cols=166  Identities=19%  Similarity=0.263  Sum_probs=127.6

Q ss_pred             CCccCCC-CCh-hHHHHHHHHHhHh--CCC-ceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC
Q 024619           46 PYDYTRS-GNP-TRDALESLLAKLD--KAD-RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (265)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~--g~~-~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g  118 (265)
                      ...|++. |.+ +++++++++....  +.+ +.+++++|+ +++. ++..++++||+|++++|+|+.+.    ..++..|
T Consensus        65 ~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~p~y~~~~----~~~~~~g  140 (404)
T PRK09265         65 AQGYSDSKGLFSARKAIMQYYQQKGIPDVDVDDIYIGNGVSELIVMAMQALLNNGDEVLVPAPDYPLWT----AAVSLSG  140 (404)
T ss_pred             CCCCCCCCCcHHHHHHHHHHHhccCCCCCCcccEEEeCChHHHHHHHHHHhCCCCCEEEEeCCCCcChH----HHHHHcC
Confidence            3568777 765 5888888876543  333 456666665 7775 66778899999999999999887    3445567


Q ss_pred             eEEEeecC-------CCHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc----
Q 024619          119 VVVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----  184 (265)
Q Consensus       119 ~~~~~~~~-------~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~----  184 (265)
                      .+++.++.       .|++++++.+.+++++|++++|+||||.+.+   +++|+++|+++|+++|+||+|+...+.    
T Consensus       141 ~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~  220 (404)
T PRK09265        141 GKPVHYLCDEEAGWFPDLDDIRSKITPRTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVH  220 (404)
T ss_pred             CEEEEEecccccCCCCCHHHHHHhccccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCc
Confidence            77776643       2688899988888999999999999999988   899999999999999999998743221    


Q ss_pred             -CC---CCCCccEEEeccccccccCCCceeeEEEee
Q 024619          185 -RP---LELGADIVMHSATKFIAGHSDVMAGVLAVK  216 (265)
Q Consensus       185 -~~---~~~~~di~~~s~sK~~~g~~g~~~G~v~~~  216 (265)
                       ..   ......+++.||||.+ +.+|+|+||++.+
T Consensus       221 ~~~~~~~~~~~vi~~~S~SK~~-~~pGlRiG~~v~~  255 (404)
T PRK09265        221 ISIASLAPDLLCVTFNGLSKAY-RVAGFRVGWMVLS  255 (404)
T ss_pred             CCHHHcCCCceEEEEecchhhc-cCcccceEEEEEe
Confidence             11   1112468899999999 6788999999964

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=99.90  E-value=5.6e-22  Score=175.75  Aligned_cols=166  Identities=19%  Similarity=0.215  Sum_probs=127.5

Q ss_pred             CccCCC-CCh-hHHHHHHHHHhHhCC----CceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCe
Q 024619           47 YDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV  119 (265)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~  119 (265)
                      ..|.+. |.+ +++++++++....+.    +++++++++++++. ++..++++||+|++++|+|+.+.    ..++..|+
T Consensus        67 ~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t~al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~  142 (403)
T TIGR01265        67 NGYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIEICIEALANPGANILVPRPGFPLYD----TRAAFSGL  142 (403)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecChHHHHHHHHHHhCCCCCEEEEeCCCchhHH----HHHHHcCC
Confidence            467655 665 477777777654332    34555555569986 66777899999999999998875    44567788


Q ss_pred             EEEeecC-------CCHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc-----
Q 024619          120 VVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----  184 (265)
Q Consensus       120 ~~~~~~~-------~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~-----  184 (265)
                      +++.++.       .|++++++++.++++++++++|+||||.+.+   +++|+++|+++|+++|+|++|+...+.     
T Consensus       143 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~  222 (403)
T TIGR01265       143 EVRLYDLLPEKDWEIDLDGLEALADEKTVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFI  222 (403)
T ss_pred             EEEEecCCcccCCccCHHHHHHHhCcCccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCcc
Confidence            8887764       2689999988888999999999999999975   799999999999999999999754332     


Q ss_pred             CCC---CCCccEEEeccccccccCCCceeeEEEeec
Q 024619          185 RPL---ELGADIVMHSATKFIAGHSDVMAGVLAVKG  217 (265)
Q Consensus       185 ~~~---~~~~di~~~s~sK~~~g~~g~~~G~v~~~~  217 (265)
                      ...   .....++++||||.| +.+|+|.||+++++
T Consensus       223 ~~~~~~~~~~vi~~~S~SK~~-~~pGlRiG~~v~~~  257 (403)
T TIGR01265       223 PMASFASIVPVLSLGGISKRW-VVPGWRLGWIIIHD  257 (403)
T ss_pred             chhhhccCCcEEEEeeccccc-CCCcceEEEEEEeC
Confidence            111   112469999999998 56789999998853

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=99.90  E-value=2.7e-23  Score=181.60  Aligned_cols=221  Identities=17%  Similarity=0.240  Sum_probs=152.0

Q ss_pred             eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCC-ceEEe-cchH-HHHH-HH
Q 024619           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD-RALCF-TSGM-AALA-AV   86 (265)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~-~~i~~-~~g~-~al~-~~   86 (265)
                      ..+++|+...+++++  +|.+.... ... ..  ....|+..   ...++++.+++++|.+ +.+++ ++|+ +++. ++
T Consensus        34 ~~~i~l~~~~~~~~~--~~~~~~~~-~~~-~~--~~~~y~~~---~~~~lr~~ia~~~~~~~~~i~~~~~Ga~~~i~~~~  104 (361)
T PRK00950         34 ESIIKLGSNENPLGP--SPKAVEAI-EKE-LS--KIHRYPEP---DAPELREALSKYTGVPVENIIVGGDGMDEVIDTLM  104 (361)
T ss_pred             cceEEccCCCCCCCC--CHHHHHHH-HHH-HH--hhcCCCCC---CHHHHHHHHHHHhCCCHHHEEEeCCCHHHHHHHHH
Confidence            378999933355663  33332221 111 11  12234433   2377888888888875 34555 7786 6775 55


Q ss_pred             HHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC-----CCHHHHHhhcCCCceEEEEecCCCCccccccHHHH
Q 024619           87 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----CDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKI  161 (265)
Q Consensus        87 ~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i  161 (265)
                      ..++++||.|++++|+|+.+.    ..++..|++++.++.     .|++++++.+.++++++++++|+||||.+.+.+++
T Consensus       105 ~~~~~~gd~vlv~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l  180 (361)
T PRK00950        105 RTFIDPGDEVIIPTPTFSYYE----ISAKAHGAKPVYAKREEDFSLDVDSVLNAITEKTKVIFLCTPNNPTGNLIPEEDI  180 (361)
T ss_pred             HHhcCCCCEEEEcCCChHHHH----HHHHHcCCEEEEeecCCCCCcCHHHHHHHhccCCCEEEEeCCCCCCCCCcCHHHH
Confidence            667899999999999998775    445677888888863     36889998888889999999999999999999999


Q ss_pred             HHHHHHcCCEEEEeCCcCCCCCcC--C--CCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCCh
Q 024619          162 AEMAHAHGALLLVDNSIMSPVLSR--P--LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP  237 (265)
Q Consensus       162 ~~~a~~~~~~li~D~~~~~~~~~~--~--~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~  237 (265)
                      .++|+++|+++|+||+|.......  .  ...+..++++|+||.+ |.+|+|.|+++++++.+ +.+.....  ...++.
T Consensus       181 ~~l~~~~~~~li~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~-g~~GlRiG~~~~~~~~~-~~~~~~~~--~~~~~~  256 (361)
T PRK00950        181 RKILESTDALVFVDEAYVEFAEYDYTPLALEYDNLIIGRTFSKVF-GLAGLRIGYGFVPEWLI-DYYMRAKT--PFSLTR  256 (361)
T ss_pred             HHHHHHCCcEEEEECchhhhCccchHHHHHhcCCEEEEEeehHhh-cCchhhcchhcCCHHHH-HHHHHhcC--CCCCCH
Confidence            999999999999999996432110  1  1224568999999999 67889999999876544 32322222  223444


Q ss_pred             hHHHHHHhccC
Q 024619          238 FDCWICLRGVK  248 (265)
Q Consensus       238 ~~~~~~~~~l~  248 (265)
                      .....+...++
T Consensus       257 ~~~~~a~~~l~  267 (361)
T PRK00950        257 LSQAAAIAALS  267 (361)
T ss_pred             HHHHHHHHHhc
Confidence            44444444444

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=99.90  E-value=4.2e-23  Score=180.79  Aligned_cols=221  Identities=17%  Similarity=0.239  Sum_probs=153.2

Q ss_pred             eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCC-ceEEecchH-HHHH-HHH
Q 024619           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD-RALCFTSGM-AALA-AVT   87 (265)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~-~~i~~~~g~-~al~-~~~   87 (265)
                      ..+++|+...+++|+  +|.+.........    ....|+..+   ..++++.++++++.+ +.+++++|+ +++. ++.
T Consensus        32 ~~~i~l~~~~~~~~~--~~~~~~a~~~~~~----~~~~y~~~~---~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~  102 (367)
T PRK02731         32 ADIIKLASNENPLGP--SPKAIEAIRAAAD----ELHRYPDGS---GFELKAALAEKFGVDPERIILGNGSDEILELLAR  102 (367)
T ss_pred             CceEEecCCCCCCCC--CHHHHHHHHHHHH----hhcCCCCCc---HHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHH
Confidence            468999933356763  3433332211111    123455432   357888888888876 567777776 7776 556


Q ss_pred             HhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHH
Q 024619           88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAE  163 (265)
Q Consensus        88 ~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~  163 (265)
                      .++++||.|++++|+|..+.    ..++..|.+++.++.+    |++++++.+.+++++|++++|+||||.+.+.+++.+
T Consensus       103 ~l~~~gd~vl~~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~  178 (367)
T PRK02731        103 AYLGPGDEVIYSEHGFAVYP----IAAQAVGAKPVEVPAKDYGHDLDAMLAAVTPRTRLVFIANPNNPTGTYLPAEEVER  178 (367)
T ss_pred             HhcCCCCEEEEecCCHHHHH----HHHHHcCCeEEEecccCCCCCHHHHHHHhCCCCcEEEEeCCCCCCCcCCCHHHHHH
Confidence            77899999999999997765    3346688999888753    789999999888999999999999999999999999


Q ss_pred             HHHHc--CCEEEEeCCcCCCCCcC----C----CCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccC
Q 024619          164 MAHAH--GALLLVDNSIMSPVLSR----P----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS  233 (265)
Q Consensus       164 ~a~~~--~~~li~D~~~~~~~~~~----~----~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~  233 (265)
                      +++.+  |+++|+||+|.......    .    ...+..++++|+||.+ |.+|+|+||++++++.+ +.+.....  ..
T Consensus       179 l~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~RiG~l~~~~~~~-~~l~~~~~--~~  254 (367)
T PRK02731        179 FLAGVPPDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAY-GLAGLRVGYGIAPPEII-DALNRVRQ--PF  254 (367)
T ss_pred             HHHhCCCCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhh-cCcccceeeeeCCHHHH-HHHHHccC--CC
Confidence            88875  89999999986443211    1    1124578999999999 67889999999877544 32322221  22


Q ss_pred             CCChhHHHHHHhccC
Q 024619          234 GLAPFDCWICLRGVK  248 (265)
Q Consensus       234 ~~~~~~~~~~~~~l~  248 (265)
                      ..+...+..+.+.++
T Consensus       255 ~~~~~~~~~a~~~l~  269 (367)
T PRK02731        255 NVNSLALAAAVAALD  269 (367)
T ss_pred             CCCHHHHHHHHHHhC
Confidence            344455555444444

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.90  E-value=1.5e-22  Score=176.92  Aligned_cols=163  Identities=21%  Similarity=0.220  Sum_probs=134.7

Q ss_pred             CChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC----
Q 024619           53 GNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (265)
Q Consensus        53 g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----  127 (265)
                      +.|..+++++.+++++|.+++++++++++++. ++..++++||+|+++.++|.+..    ..++..|++++.++.+    
T Consensus        42 ~~~~~~~l~~~la~~~g~~~i~~~~g~t~al~~~l~~~~~~gd~Vl~~~~~~~~~~----~~~~~~g~~~~~v~~~~~~~  117 (361)
T cd06452          42 EKPPIKDFHHDLAEFLGMDEARVTPGAREGKFAVMHSLCEKGDWVVVDGLAHYTSY----VAAERAGLNVREVPNTGHPE  117 (361)
T ss_pred             cCchHHHHHHHHHHHcCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCcchHHH----HHHHhcCCEEEEEecCCCCC
Confidence            34679999999999999977777666778886 67778899999999999887765    3457788999888643    


Q ss_pred             ---CHHHHHhhcC-------CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEe
Q 024619          128 ---DLDEVASAIG-------PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMH  196 (265)
Q Consensus       128 ---d~~~l~~~~~-------~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~  196 (265)
                         |++++++++.       +++++|++++|+||+|.+.|+++|.++|+++|+++++|++|+.+... .....+.|++++
T Consensus       118 ~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~  197 (361)
T cd06452         118 YHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGRMPVSGKELGADFIVG  197 (361)
T ss_pred             cccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeeccHHHHHHHHHHcCCeEEEECCcccCCcCCCHHHcCCCEEEe
Confidence               6788888775       37899999999999999999999999999999999999999987653 344567899999


Q ss_pred             ccccccccCCCceeeEEEeechhHH
Q 024619          197 SATKFIAGHSDVMAGVLAVKGERLA  221 (265)
Q Consensus       197 s~sK~~~g~~g~~~G~v~~~~~~~~  221 (265)
                      |+||+++++.  ++|+++++++.+.
T Consensus       198 s~~K~l~~~~--~~G~l~~~~~~~~  220 (361)
T cd06452         198 SGHKSMAASA--PIGVLATTEEWAD  220 (361)
T ss_pred             cCCccccCCC--CeEEEEECHHHHH
Confidence            9999996543  5799988765543

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=99.90  E-value=5.4e-23  Score=179.77  Aligned_cols=190  Identities=20%  Similarity=0.259  Sum_probs=135.6

Q ss_pred             ccCCCCChhHHHHHHHHHhHhCCC-ceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEee
Q 024619           48 DYTRSGNPTRDALESLLAKLDKAD-RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV  124 (265)
Q Consensus        48 ~y~~~g~~~~~~l~~~l~~~~g~~-~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~  124 (265)
                      .|+..|.   .++++.+++++|.+ +.+++++|+ +++. ++..++++||.|++++|+|+.+.    ..++..|.+++.+
T Consensus        60 ~Yp~~g~---~~Lr~aia~~~~~~~~~I~vt~Gs~e~i~~~~~~l~~~gd~vlv~~P~y~~~~----~~~~~~g~~v~~v  132 (366)
T PRK01533         60 LYPDGGA---TTLRQTIANKLHVKMEQVLCGSGLDEVIQIISRAVLKAGDNIVTAGATFPQYR----HHAIIEGCEVKEV  132 (366)
T ss_pred             cCCCCCH---HHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHhcCCCCEEEEcCCcHHHHH----HHHHHcCCEEEEe
Confidence            3654454   34555556666766 567777776 8886 66778899999999999999886    4556789999988


Q ss_pred             cCC----CHHHHHhhcCCCceEEEEecCCCCccccccHHH---HHHHHHHcCCEEEEeCCcCCCCCc--------CCCCC
Q 024619          125 NTC----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRK---IAEMAHAHGALLLVDNSIMSPVLS--------RPLEL  189 (265)
Q Consensus       125 ~~~----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~---i~~~a~~~~~~li~D~~~~~~~~~--------~~~~~  189 (265)
                      +.+    |++++++++.++++++++++|+||||.+.+.++   |+++|++++ ++|+||+|......        .....
T Consensus       133 ~~~~~~~d~~~l~~~~~~~~~~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~  211 (366)
T PRK01533        133 ALNNGVYDLDEISSVVDNDTKIVWICNPNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKH  211 (366)
T ss_pred             ecCCCCcCHHHHHHHhCcCCcEEEEeCCCCCCCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccC
Confidence            764    789999988888999999999999999987655   555555554 67789998632211        11123


Q ss_pred             CccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccCc
Q 024619          190 GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT  249 (265)
Q Consensus       190 ~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  249 (265)
                      +..+++.||||.+ |.+|+|.||++++++.+ +.+....  .....+...+..+...|+.
T Consensus       212 ~~vi~~~SfSK~~-~l~GlRiG~~i~~~~~~-~~l~~~~--~~~~~~~~~q~aa~~~l~~  267 (366)
T PRK01533        212 KNILVLRTFSKAY-GLASFRVGYAVGHEELI-EKLNVVR--LPFNVSSLAQKAATIAFGD  267 (366)
T ss_pred             CCEEEEeCchHHh-cChHHHHhHHhCCHHHH-HHHHHhc--CCCCcCHHHHHHHHHHhCC
Confidence            5679999999999 77899999998876544 4333332  2355666666555555543

>PLN02231 alanine transaminase

Probab=99.90  E-value=2.5e-22  Score=182.57  Aligned_cols=179  Identities=19%  Similarity=0.216  Sum_probs=135.1

Q ss_pred             CCccCCC-CCh-hHHHHHHHHHhHhCCC---ceEEecchH-HHHH-HHHHhcC-CCCEEEEcCCCCCChHHHHHhhcCCC
Q 024619           46 PYDYTRS-GNP-TRDALESLLAKLDKAD---RALCFTSGM-AALA-AVTHLLG-TGEEIVAGDDLYGGTDRLLSRVTPKT  117 (265)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~~~g~-~al~-~~~~~~~-~g~~viv~~~~~~~~~~~~~~~~~~~  117 (265)
                      ...|++. |.+ +++.+.+++.+..|.+   +.|++++|+ +++. ++..++. +||.|+++.|.|+.+.    ..++..
T Consensus       161 ~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~~~~gd~Vli~~P~Y~~y~----~~~~~~  236 (534)
T PLN02231        161 TGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYS----ASIALH  236 (534)
T ss_pred             ccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhccCCCCEEEEeCCCChhHH----HHHHHc
Confidence            4669888 887 5999999998876642   456666665 8986 5566664 7999999999999997    445667


Q ss_pred             CeEEEeecCC-------CHHHHHhhcCC------CceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCC
Q 024619          118 GVVVKRVNTC-------DLDEVASAIGP------WTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSP  181 (265)
Q Consensus       118 g~~~~~~~~~-------d~~~l~~~~~~------~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~  181 (265)
                      |.+++.++++       |++++++++.+      ++++|++++|+||||.+.+   +++|+++|+++|++||+||+|..-
T Consensus       237 g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l  316 (534)
T PLN02231        237 GGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQEN  316 (534)
T ss_pred             CCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhc
Confidence            8888887643       68888887753      6899999999999999975   689999999999999999999754


Q ss_pred             CCc------CCC------C---C-CccEEEeccccccccCCCceeeEEEee--chhHHHHHHHHH
Q 024619          182 VLS------RPL------E---L-GADIVMHSATKFIAGHSDVMAGVLAVK--GERLAKELYFLQ  228 (265)
Q Consensus       182 ~~~------~~~------~---~-~~di~~~s~sK~~~g~~g~~~G~v~~~--~~~~~~~~~~~~  228 (265)
                      .+.      ...      .   . ...+++.|+||.+.+.+|+|+||+++.  +..+.+.+....
T Consensus       317 ~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~~~~~~~l~~~l~k~~  381 (534)
T PLN02231        317 VYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFTSDVREQIYKVA  381 (534)
T ss_pred             ccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEEEEEecCCHHHHHHHHHHH
Confidence            431      100      0   1 135889999997767789999999863  344444444333

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.90  E-value=1.6e-22  Score=177.27  Aligned_cols=160  Identities=20%  Similarity=0.184  Sum_probs=134.0

Q ss_pred             hhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC------
Q 024619           55 PTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------  127 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------  127 (265)
                      +...++++.+++++|.+..+++++|++++. ++.+++++||.|+++.+.|.+..    ..++..|++++.++..      
T Consensus        51 ~~~~~~~e~lA~~~g~~~~~i~~g~~~a~~~~~~~l~~~gd~Vl~~~~~h~s~~----~~~~~~g~~~~~~~~~~~~~~~  126 (370)
T TIGR02539        51 PPIHDFLEDLAEFLGMDEARVTHGAREGKFAVMHALCKEGDWVVLDGLAHYTSY----VAAERAGLNVKEVPHTGHPEYK  126 (370)
T ss_pred             hHHHHHHHHHHHHhCCCceEEECChHHHHHHHHHHhhCCCCEEEECCcccHHHH----HHHHHcCCEEEEEecCCcccCC
Confidence            467788888999999998888888888885 77888899999999988876654    3457789999988864      


Q ss_pred             -CHHHHHhhcC-------CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEecc
Q 024619          128 -DLDEVASAIG-------PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSA  198 (265)
Q Consensus       128 -d~~~l~~~~~-------~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~  198 (265)
                       |++++++.+.       +++++|++++|+||+|.+.|+++|.++|+++|+++++|++|+.|..+ .....+.|++++|+
T Consensus       127 ~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~~i~~la~~~~~~livDea~~~g~~~~~~~~~~~di~v~s~  206 (370)
T TIGR02539       127 VDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKVCREKGVPLLLNCAYTVGRMPVSAKEIGADFIVGSG  206 (370)
T ss_pred             cCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccCHHHHHHHHHHcCCeEEEECccccCCcCCCHHHcCCCEEEeeC
Confidence             8999998875       26789999999999999999999999999999999999999988654 33355789999999


Q ss_pred             ccccccCCCceeeEEEeechhH
Q 024619          199 TKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       199 sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                      ||+++++  .+.|+++++++.+
T Consensus       207 sK~~~~~--g~~G~l~~~~~~i  226 (370)
T TIGR02539       207 HKSMAAS--GPCGVLGMSEEWE  226 (370)
T ss_pred             cccccCC--CCEEEEEECHHHH
Confidence            9999543  3479998877544

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>PRK06225 aspartate aminotransferase; Provisional

Probab=99.90  E-value=4.3e-22  Score=175.21  Aligned_cols=204  Identities=18%  Similarity=0.169  Sum_probs=142.4

Q ss_pred             eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCC--ceEEecchHHHHH-HHH
Q 024619           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD--RALCFTSGMAALA-AVT   87 (265)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~--~~i~~~~g~~al~-~~~   87 (265)
                      ..+|+|+ .++..- .++|.+........  .......|.+.  ....++++.+++++|.+  ++++++++++++. ++.
T Consensus        28 ~~~i~l~-~~~~~~-~~~~~~~~a~~~~~--~~~~~~~y~~~--~g~~~lr~~ia~~l~~~~~~v~~~~g~t~al~~~~~  101 (380)
T PRK06225         28 KEMIWMG-QNTNHL-GPHEEVREAMIRCI--EEGEYCKYPPP--EGFPELRELILKDLGLDDDEALITAGATESLYLVMR  101 (380)
T ss_pred             CCeEEcc-CCCCCC-CCCHHHHHHHHHHH--hcCCCCCCCCC--cchHHHHHHHHHhcCCCCCcEEEeCCHHHHHHHHHH
Confidence            4678888 444422 23344433321111  11122345443  12556667777777765  4555555668886 666


Q ss_pred             HhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC--------CCHHHHHhhcCCCceEEEEecCCCCcccccc--
Q 024619           88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT--------CDLDEVASAIGPWTKLVWVESPTNPRQQICD--  157 (265)
Q Consensus        88 ~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~--  157 (265)
                      .++.+||+|++++|+|..+.    ..++..|.+++.+++        .|++++++.+.+++++|++++|+||||.+.+  
T Consensus       102 ~~~~~gd~vl~~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~~~~  177 (380)
T PRK06225        102 AFLSPGDNAVTPDPGYLIID----NFASRFGAEVIEVPIYSEECNYKLTPELVKENMDENTRLIYLIDPLNPLGSSYTEE  177 (380)
T ss_pred             HhcCCCCEEEEcCCCCcchH----HHHHHhCceEEeeccccccCCccCCHHHHHhhcCCCceEEEEeCCCCCCCcCCCHH
Confidence            77899999999999998775    445678888888764        2678999998888999999999999999864  


Q ss_pred             -HHHHHHHHHHcCCEEEEeCCcCCCCCc----CCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHH
Q 024619          158 -IRKIAEMAHAHGALLLVDNSIMSPVLS----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF  226 (265)
Q Consensus       158 -l~~i~~~a~~~~~~li~D~~~~~~~~~----~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~  226 (265)
                       +++|+++|+++|+++|+||+|......    .....+.++++.|+||++ |++|+|+|+++++++.+ +....
T Consensus       178 ~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~i~~~s~SK~~-g~~G~RiG~i~~~~~l~-~~~~~  249 (380)
T PRK06225        178 EIKEFAEIARDNDAFLLHDCTYRDFAREHTLAAEYAPEHTVTSYSFSKIF-GMAGLRIGAVVATPDLI-EVVKS  249 (380)
T ss_pred             HHHHHHHHHHHCCcEEEEehhHHHHhccCCchhhcCCCCEEEEeechhhc-CCccceeEEEecCHHHH-HHHHH
Confidence             899999999999999999998521111    111235678999999999 77899999999876544 43333

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=99.90  E-value=8.5e-23  Score=176.34  Aligned_cols=180  Identities=19%  Similarity=0.202  Sum_probs=135.0

Q ss_pred             HHHHHHHHHhHhCCC-ceEEecchH-HHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHh
Q 024619           57 RDALESLLAKLDKAD-RALCFTSGM-AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVAS  134 (265)
Q Consensus        57 ~~~l~~~l~~~~g~~-~~i~~~~g~-~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~  134 (265)
                      ..++++.+++++|.+ +.+++++|+ +++.++..++.+| .|++.+|+|..+.    ..++..|++++.++  |++++++
T Consensus        49 ~~~lr~~la~~~~~~~~~i~~t~G~~~~i~~~~~~l~~g-~vl~~~p~y~~~~----~~~~~~g~~~~~~~--d~~~l~~  121 (330)
T TIGR01140        49 YDELRAAAAAYYGLPAASVLPVNGAQEAIYLLPRLLAPG-RVLVLAPTYSEYA----RAWRAAGHEVVELP--DLDRLPA  121 (330)
T ss_pred             HHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHhCCC-eEEEeCCCcHHHH----HHHHHcCCEEEEeC--CHHHHHh
Confidence            477888888888875 677777776 7787666667788 6999999998886    44577899999988  9999999


Q ss_pred             hcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc-CCC----CCCccEEEeccccccccCC
Q 024619          135 AIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-RPL----ELGADIVMHSATKFIAGHS  206 (265)
Q Consensus       135 ~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~----~~~~di~~~s~sK~~~g~~  206 (265)
                      .+ +++++|++++|+||||.+.+   +++|+++|+++|+++|+||+|...... ...    ..+.+++++|+||++ |++
T Consensus       122 ~~-~~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~  199 (330)
T TIGR01140       122 AL-EELDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPDASLAPQAARFPGLVVLRSLTKFF-GLA  199 (330)
T ss_pred             hc-ccCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCccchhhHhccCCCEEEEEecchhh-cCc
Confidence            88 46789999999999999987   677889999999999999999744332 111    235679999999999 677


Q ss_pred             CceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619          207 DVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       207 g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      |+|+|+++++++.+ ..+....  .....+...+..+.+.++
T Consensus       200 G~R~G~i~~~~~~~-~~l~~~~--~~~~~s~~~q~~~~~~l~  238 (330)
T TIGR01140       200 GLRLGFVVAHPALL-ARLREAL--GPWTVNGPARAAGRAALA  238 (330)
T ss_pred             hhhhhheeCCHHHH-HHHHhcC--CCCCchHHHHHHHHHHHh
Confidence            89999999877644 3333222  223344444444444443

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=99.90  E-value=1.8e-22  Score=176.87  Aligned_cols=191  Identities=19%  Similarity=0.228  Sum_probs=136.3

Q ss_pred             CccCCCCChhHHHHHHHHHhHhCCC-ceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEe
Q 024619           47 YDYTRSGNPTRDALESLLAKLDKAD-RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKR  123 (265)
Q Consensus        47 ~~y~~~g~~~~~~l~~~l~~~~g~~-~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~  123 (265)
                      +.|++.+   ..++++.++++++.+ +.+++++|+ +++. ++..++++||.|++++|+|+.+...    ++..|.+++.
T Consensus        62 ~~Y~~~~---~~~Lr~~ia~~~~~~~~~I~it~G~~~~l~~~~~~~~~~gd~vlv~~p~y~~~~~~----~~~~g~~~~~  134 (369)
T PRK08153         62 WKYGDPE---NHDLRHALAAHHGVAPENIMVGEGIDGLLGLIVRLYVEPGDPVVTSLGAYPTFNYH----VAGFGGRLVT  134 (369)
T ss_pred             hcCCCCc---cHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEECCCcchHHHHH----HHHcCCeEEE
Confidence            4566553   456777777777765 577778776 8886 5566789999999999999988733    3456788887


Q ss_pred             ecCC----CHHHHHhhcC-CCceEEEEecCCCCccccccHHHHHHHHHHc--CCEEEEeCCcCCCCCc---CCC--CCCc
Q 024619          124 VNTC----DLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAH--GALLLVDNSIMSPVLS---RPL--ELGA  191 (265)
Q Consensus       124 ~~~~----d~~~l~~~~~-~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~--~~~li~D~~~~~~~~~---~~~--~~~~  191 (265)
                      ++.+    |++++++.+. +++++|++++|+||||.+.+.+++.++++..  +++||+||+|......   ...  ..+.
T Consensus       135 vp~~~~~~~~~~l~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~  214 (369)
T PRK08153        135 VPYRDDREDLDALLDAARRENAPLVYLANPDNPMGSWHPAADIVAFIEALPETTLLVLDEAYCETAPAGAAPPIDTDDPN  214 (369)
T ss_pred             eeCCCCCCCHHHHHHHhcccCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhhcCcccchhhhhcCCC
Confidence            7753    6788776654 6789999999999999999877666666543  8999999999743221   111  2235


Q ss_pred             cEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619          192 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       192 di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      .+++.||||.+ |.+|+|+||++++++.+ +.+...+.  ...+++..+..+...++
T Consensus       215 ~i~~~SfSK~~-g~~GlRiG~~v~~~~~~-~~l~~~~~--~~~~s~~~q~~~~~~l~  267 (369)
T PRK08153        215 VIRMRTFSKAY-GLAGARVGYAIGAPGTI-KAFDKVRN--HFGMNRIAQAAALAALK  267 (369)
T ss_pred             EEEEecchHhc-cCcchheeeeecCHHHH-HHHHHhhc--CCCCCHHHHHHHHHHhc
Confidence            69999999999 67789999999876544 33333332  24466666555555444

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=99.90  E-value=9e-23  Score=176.35  Aligned_cols=220  Identities=19%  Similarity=0.263  Sum_probs=157.7

Q ss_pred             eEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhC-CC-ceEEecchH-HHHH-HHH
Q 024619           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK-AD-RALCFTSGM-AALA-AVT   87 (265)
Q Consensus        12 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g-~~-~~i~~~~g~-~al~-~~~   87 (265)
                      .+++|++.-+.+|+.  |.+.........    ....|+.   +...++++.+++++| .+ +.++++.|+ +.+. +++
T Consensus        23 ~~i~LssNenP~gp~--~~~~~~~~~~~~----~~~rYPd---~~~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l~~   93 (356)
T COG0079          23 GIIKLSSNENPYGPP--PKVIEAIRAALD----KLNRYPD---PDYRELRAALAEYYGVVDPENVLVGNGSDELIELLVR   93 (356)
T ss_pred             cceeecCCCCCCCCC--HHHHHHHHHHHH----hhccCCC---CcHHHHHHHHHHHhCCCCcceEEEcCChHHHHHHHHH
Confidence            588898555566643  332222111110    1233443   367888888999988 55 677778887 7776 778


Q ss_pred             HhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC----CCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHH
Q 024619           88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT----CDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAE  163 (265)
Q Consensus        88 ~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~  163 (265)
                      .++.+||+|++..|+|..|.    ..++..|++++.++.    .|++.+.+.+.+++++|++|+||||||...+.++|.+
T Consensus        94 ~~~~~gd~vl~~~Ptf~~Y~----~~a~~~g~~~~~v~~~~~~~d~~~~~~~~~~~~~lv~i~nPNNPTG~~~~~~~l~~  169 (356)
T COG0079          94 AFVEPGDTVLIPEPTFSMYE----IAAQLAGAEVVKVPLKEFRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLPREELRA  169 (356)
T ss_pred             HhhcCCCEEEEcCCChHHHH----HHHHhcCCeEEEecccccccCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHHHHHH
Confidence            88999999999999999996    666889999999997    5889999998889999999999999999988777777


Q ss_pred             HHHHc--CCEEEEeCCcCCCCCcCCC----CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCCh
Q 024619          164 MAHAH--GALLLVDNSIMSPVLSRPL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP  237 (265)
Q Consensus       164 ~a~~~--~~~li~D~~~~~~~~~~~~----~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~  237 (265)
                      ++...  +.+||+||+|....-.+..    ..+..+++.||||.| |.+|+|.|+++++.+.+ +.+....  ....++.
T Consensus       170 l~~~~~~~~~vVvDEAY~eF~~~~~~~l~~~~~nlivlRTfSKa~-gLAGlRlGy~ia~~~~i-~~l~~vr--~p~~v~~  245 (356)
T COG0079         170 LLEALPEGGLVVIDEAYIEFSPESSLELLKYPPNLIVLRTFSKAF-GLAGLRVGYAIANPELI-AALNKVR--PPFNVSS  245 (356)
T ss_pred             HHHhCCCCcEEEEeCchhhcCCchhhhhccCCCCEEEEEecHHhh-hcchhceeeccCCHHHH-HHHHHhc--CCCCCCH
Confidence            76654  8899999999743332111    234479999999999 88999999987766544 4333332  2345555


Q ss_pred             hHHHHHHhccC
Q 024619          238 FDCWICLRGVK  248 (265)
Q Consensus       238 ~~~~~~~~~l~  248 (265)
                      .....+...++
T Consensus       246 ~a~~aa~aal~  256 (356)
T COG0079         246 PALAAAIAALR  256 (356)
T ss_pred             HHHHHHHHHcc
Confidence            55544444443

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=99.90  E-value=4.2e-23  Score=179.39  Aligned_cols=221  Identities=18%  Similarity=0.228  Sum_probs=150.8

Q ss_pred             eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCC-ceEEecchH-HHHH-HHH
Q 024619           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD-RALCFTSGM-AALA-AVT   87 (265)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~-~~i~~~~g~-~al~-~~~   87 (265)
                      ..+|+|+ .+++ +..+||.+..+. ... .  .....|+..   ..+++++.++++++.+ +.+++++|+ +++. ++.
T Consensus        19 ~~~i~l~-~~~~-~~~~~~~~~~a~-~~~-~--~~~~~y~~~---~~~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~~~~   89 (346)
T TIGR01141        19 KEVIKLN-SNEN-PFGPPPKAKEAL-RAE-A--DKLHRYPDP---DPAELKQALADYYGVDPEQILLGNGSDEIIELLIR   89 (346)
T ss_pred             CceEEcc-CCCC-CCCCCHHHHHHH-HHh-H--HHhhcCCCC---CHHHHHHHHHHHhCcChHHEEEcCCHHHHHHHHHH
Confidence            4799999 6555 222344333322 111 1  112345433   2367888888888865 456666665 8875 667


Q ss_pred             HhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC-----CCHHHHHhhcCCCceEEEEecCCCCccccccHHHHH
Q 024619           88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----CDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIA  162 (265)
Q Consensus        88 ~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~  162 (265)
                      .++++||+|++++|+|+.+.    ..++..|.+++.++.     .|++++++.+.+++++|++++|+||||.+.+++++.
T Consensus        90 ~l~~~gd~v~~~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~~~~~~~  165 (346)
T TIGR01141        90 AFLEPGDAVLVPPPTYSMYE----ISAKIHGAEVVKVPLDEDGQLDLEDILVAIDDKPKLVFLCSPNNPTGNLLSRSDIE  165 (346)
T ss_pred             HhcCCCCEEEEcCCCHHHHH----HHHHHcCCeEEEeccCCCCCCCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCHHHHH
Confidence            77899999999999997665    445668899988875     378999998888899999999999999999999999


Q ss_pred             HHHHHc--CCEEEEeCCcCCCCCc-CC----CCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCC
Q 024619          163 EMAHAH--GALLLVDNSIMSPVLS-RP----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL  235 (265)
Q Consensus       163 ~~a~~~--~~~li~D~~~~~~~~~-~~----~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~  235 (265)
                      ++++.+  |+++|+|++|+.-... .+    ...+.+++++|+||++ |++|+|+|+++.+++.+ +.+.....  ....
T Consensus       166 ~l~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~i~~~S~sK~~-g~~G~r~G~~~~~~~~~-~~~~~~~~--~~~~  241 (346)
T TIGR01141       166 AVLERTPEDALVVVDEAYGEFSGEPSTLPLLAEYPNLIVLRTLSKAF-GLAGLRIGYAIANAEII-DALNKVRA--PFNL  241 (346)
T ss_pred             HHHHhCCCCcEEEEECchhhhcCCccHHHHHhhCCCEEEEehhhHhh-hchhhhceeeecCHHHH-HHHHhccC--CCCC
Confidence            998887  9999999998732211 11    1123568899999999 56789999999876543 33333221  2334


Q ss_pred             ChhHHHHHHhccC
Q 024619          236 APFDCWICLRGVK  248 (265)
Q Consensus       236 ~~~~~~~~~~~l~  248 (265)
                      ++..+..+.+.++
T Consensus       242 ~~~~~~~~~~~l~  254 (346)
T TIGR01141       242 SRLAQAAAIAALR  254 (346)
T ss_pred             CHHHHHHHHHHhC
Confidence            4444444444443

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=99.90  E-value=8.8e-23  Score=180.63  Aligned_cols=162  Identities=21%  Similarity=0.259  Sum_probs=134.0

Q ss_pred             hHHHHHHHHHhHhCCC--ceEEecch-HHHHH-HHHHh----cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC
Q 024619           56 TRDALESLLAKLDKAD--RALCFTSG-MAALA-AVTHL----LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC  127 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~~i~~~~g-~~al~-~~~~~----~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  127 (265)
                      ..+++++.+++++|++  +.+++++| ++++. ++.++    +++||+|++++++|++....+...++..|++++.++.+
T Consensus        61 ~~~~~r~~la~~~g~~~~~~i~~t~g~t~~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~  140 (398)
T TIGR03392        61 RYELARQQVARFLNAPDAENIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIG  140 (398)
T ss_pred             HHHHHHHHHHHHhCCCCCCeEEEeCChHHHHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecC
Confidence            3678999999999974  45555555 58886 55555    47899999999999987666666778889999998753


Q ss_pred             -----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEeccccc
Q 024619          128 -----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKF  201 (265)
Q Consensus       128 -----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~  201 (265)
                           |++++++++.+++++|++++++||||.+.|+++|+++|+++|+++++|++|+.+... +....+.|++++|++|+
T Consensus       141 ~~~~~~~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~  220 (398)
T TIGR03392       141 ADLLPDIRQLPELLTPRTRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVVHGPPDVQALDIDFYAFSGHKL  220 (398)
T ss_pred             CCCCcCHHHHHHHhccCceEEEEECccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCCCCChhhcCCCEEEEecccc
Confidence                 789999999989999999999999999999999999999999999999999877664 23345789999999997


Q ss_pred             cccCCCceeeEEEeechhH
Q 024619          202 IAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       202 ~~g~~g~~~G~v~~~~~~~  220 (265)
                      + ||+|  .|+++.+++.+
T Consensus       221 ~-gp~G--~G~l~~~~~~~  236 (398)
T TIGR03392       221 Y-GPTG--IGVLYGKTELL  236 (398)
T ss_pred             c-CCCc--eEEEEEcHHHH
Confidence            6 7887  59998877544

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=99.90  E-value=3.7e-22  Score=176.48  Aligned_cols=165  Identities=19%  Similarity=0.162  Sum_probs=126.2

Q ss_pred             CCccCCC-CCh-hHHHHHHHHHhHhCC---CceE--EecchH-HHHH-HHHHh--cCCCCEEEEcCCCCCChHHHHHhhc
Q 024619           46 PYDYTRS-GNP-TRDALESLLAKLDKA---DRAL--CFTSGM-AALA-AVTHL--LGTGEEIVAGDDLYGGTDRLLSRVT  114 (265)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~---~~~i--~~~~g~-~al~-~~~~~--~~~g~~viv~~~~~~~~~~~~~~~~  114 (265)
                      ...|++. |.+ +++++.+++.+..+.   .+.+  ++|+|+ +|+. ++..+  +++||+|++++|+|+.+.    ..+
T Consensus        62 ~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~----~~~  137 (396)
T PRK09257         62 TKNYLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHR----AIF  137 (396)
T ss_pred             CCCcCCCCCCHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHH----HHH
Confidence            4578887 886 599999998776542   2333  667665 8886 44333  589999999999999997    555


Q ss_pred             CCCCeEEEeecC-------CCHHHHHhhcC---CCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCC
Q 024619          115 PKTGVVVKRVNT-------CDLDEVASAIG---PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSP  181 (265)
Q Consensus       115 ~~~g~~~~~~~~-------~d~~~l~~~~~---~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~  181 (265)
                      +..|++++.++.       .|++++++.+.   +++.++++++||||||.+.+   +++|+++|++||+++|+||+|..-
T Consensus       138 ~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l  217 (396)
T PRK09257        138 EAAGLEVKTYPYYDAATKGLDFDAMLADLSQAPAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGF  217 (396)
T ss_pred             HHcCCcEEEEeccccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccccc
Confidence            778889888874       26788888764   34567777999999999975   688999999999999999999753


Q ss_pred             CCc-C----C----C-CCCccEEEeccccccccCCCceeeEEEe
Q 024619          182 VLS-R----P----L-ELGADIVMHSATKFIAGHSDVMAGVLAV  215 (265)
Q Consensus       182 ~~~-~----~----~-~~~~di~~~s~sK~~~g~~g~~~G~v~~  215 (265)
                      ... .    +    . ..+..++++||||.+ +++|+|.||++.
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~-~~~GlRiG~~~~  260 (396)
T PRK09257        218 GDGLEEDAYGLRAFAAAGLELLVASSFSKNF-GLYGERVGALSV  260 (396)
T ss_pred             ccchHHHHHHHHHHHhcCCcEEEEEEcCCcC-ccccccceeEEE
Confidence            321 0    0    1 123579999999999 788999999974

>PRK06836 aspartate aminotransferase; Provisional

Probab=99.90  E-value=5.7e-22  Score=175.18  Aligned_cols=169  Identities=25%  Similarity=0.304  Sum_probs=131.9

Q ss_pred             CCccCCC-CCh-hHHHHHHHHHhHhCC---CceEEecch-HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC
Q 024619           46 PYDYTRS-GNP-TRDALESLLAKLDKA---DRALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (265)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~---~~~i~~~~g-~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g  118 (265)
                      ...|... |.+ +++.+++++.+.++.   .+.+++++| ++++. ++..++++||.|++++|+|+.+.    ..++..|
T Consensus        66 ~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vli~~p~~~~~~----~~~~~~g  141 (394)
T PRK06836         66 LHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGALNVALKAILNPGDEVIVFAPYFVEYR----FYVDNHG  141 (394)
T ss_pred             cccCCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCCccHH----HHHHHcC
Confidence            4567555 776 488888888776543   234445544 58886 66778999999999999999986    4456778


Q ss_pred             eEEEeecCC------CHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHH------cCCEEEEeCCcCCCCC
Q 024619          119 VVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHA------HGALLLVDNSIMSPVL  183 (265)
Q Consensus       119 ~~~~~~~~~------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~------~~~~li~D~~~~~~~~  183 (265)
                      ++++.++.+      |++++++++.+++++|++++|+||||.+.+   +++|+++|++      ||+++|+||+|.....
T Consensus       142 ~~v~~v~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~  221 (394)
T PRK06836        142 GKLVVVPTDTDTFQPDLDALEAAITPKTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVY  221 (394)
T ss_pred             CEEEEEecCCccCcCCHHHHHhhcCcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccc
Confidence            999888753      689999999889999999999999999976   6888888999      8999999999974322


Q ss_pred             c-----C-CCCCCccEEEeccccccccCCCceeeEEEeechh
Q 024619          184 S-----R-PLELGADIVMHSATKFIAGHSDVMAGVLAVKGER  219 (265)
Q Consensus       184 ~-----~-~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~  219 (265)
                      .     . ....+.+++++|+||.+ +.+|+|.||+++++..
T Consensus       222 ~~~~~~~~~~~~~~~i~~~S~SK~~-~~pGlRiG~~~~~~~~  262 (394)
T PRK06836        222 DGAEVPYIFKYYDNSIVVYSFSKSL-SLPGERIGYIAVNPEM  262 (394)
T ss_pred             CCCCCCChHHccCcEEEEecchhhc-cCcceeeEEEecCHHH
Confidence            1     1 11235689999999999 6678999999987643

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=99.90  E-value=3.1e-22  Score=176.19  Aligned_cols=202  Identities=26%  Similarity=0.275  Sum_probs=148.5

Q ss_pred             cceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CC-hhHHHHHHHHHhHhCCCceEEecchHHHH-HH
Q 024619            9 VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GN-PTRDALESLLAKLDKADRALCFTSGMAAL-AA   85 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~-~~~~~l~~~l~~~~g~~~~i~~~~g~~al-~~   85 (265)
                      .+..+|+|+ +++++|..++|.+.................|... |. +..+++++.++++++.++.+++++|++++ .+
T Consensus        37 ~g~~~id~~-~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~~i~~~~g~~~~~~~  115 (385)
T PRK05958         37 DGRRMLNFA-SNDYLGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWFGAERALLFSSGYAANLAV  115 (385)
T ss_pred             CCceEEEee-CCCcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHH
Confidence            567899999 7777887655544443221111111111122222 43 56899999999999988889999998665 46


Q ss_pred             HHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCC---CceEEEEecCCCCccccccHHHHH
Q 024619           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP---WTKLVWVESPTNPRQQICDIRKIA  162 (265)
Q Consensus        86 ~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~---~~~~i~~~~~~np~G~~~~l~~i~  162 (265)
                      +..++++||.|++++|.|+.+..    .++..|.+++.++..|++++++.+.+   ++.++++++++|++|.+.++++|+
T Consensus       116 l~~~~~~gd~V~~~~~~~~~~~~----~~~~~g~~~~~~~~~d~~~l~~~i~~~~~~~~lvi~~~~~~~~G~~~~l~~i~  191 (385)
T PRK05958        116 LTALAGKGDLIVSDKLNHASLID----GARLSRARVRRYPHNDVDALEALLAKWRAGRALIVTESVFSMDGDLAPLAELV  191 (385)
T ss_pred             HHHhCCCCCEEEEeCccCHHHHH----HHHhcCCceEEeCCCCHHHHHHHHHhccCCCeEEEEEecccCCCCcCCHHHHH
Confidence            67789999999999999988863    34567888888888899999988864   366778888999999999999999


Q ss_pred             HHHHHcCCEEEEeCCcCCCCCcC---------CC-CCCccEEEeccccccccCCCceeeEEEeechh
Q 024619          163 EMAHAHGALLLVDNSIMSPVLSR---------PL-ELGADIVMHSATKFIAGHSDVMAGVLAVKGER  219 (265)
Q Consensus       163 ~~a~~~~~~li~D~~~~~~~~~~---------~~-~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~  219 (265)
                      ++|++||+++|+||+|+.+.++.         .. ..+.++++.|+||++ +++|   |+++.+++.
T Consensus       192 ~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G---g~~~~~~~~  254 (385)
T PRK05958        192 ALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKAL-GSSG---AAVLGSETL  254 (385)
T ss_pred             HHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhc-ccCC---cEEEcCHHH
Confidence            99999999999999998664421         11 123568999999999 4443   777766543

>PRK09105 putative aminotransferase; Provisional

Probab=99.90  E-value=1.7e-22  Score=176.90  Aligned_cols=159  Identities=23%  Similarity=0.307  Sum_probs=122.9

Q ss_pred             HHHHHHHHHhHhCCC-ceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-----C
Q 024619           57 RDALESLLAKLDKAD-RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----D  128 (265)
Q Consensus        57 ~~~l~~~l~~~~g~~-~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----d  128 (265)
                      ..++++.+++++|.+ +.|++++|+ +++. ++..++++||+|++++|+|+.+.    ..++..|.+++.++.+     |
T Consensus        80 ~~~Lr~aia~~~~v~~e~I~it~Gs~~ai~~~~~~l~~~gd~Vli~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~d  155 (370)
T PRK09105         80 EDDLRTLFAAQEGLPADHVMAYAGSSEPLNYAVLAFTSPTAGLVTADPTYEAGW----RAADAQGAPVAKVPLRADGAHD  155 (370)
T ss_pred             HHHHHHHHHHHhCcChhhEEEcCChHHHHHHHHHHHcCCCCEEEEeCCChHHHH----HHHHHcCCeEEEecCCCCCCCC
Confidence            666777788888766 566666665 8886 66778899999999999999886    5567789999988753     6


Q ss_pred             HHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHH--cCCEEEEeCCcCCCCCc-CC----CCCCccEEEeccccc
Q 024619          129 LDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA--HGALLLVDNSIMSPVLS-RP----LELGADIVMHSATKF  201 (265)
Q Consensus       129 ~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~--~~~~li~D~~~~~~~~~-~~----~~~~~di~~~s~sK~  201 (265)
                      ++++++. .++++++++++|+||||.+.+.+++.++++.  +++++|+||+|...... ..    ...+..+++.||||.
T Consensus       156 ~~~l~~~-~~~~~~v~l~nP~NPTG~~~~~~~l~~l~~~~~~~~~lIvDEaY~~f~~~~s~~~~~~~~~~vi~~~SfSK~  234 (370)
T PRK09105        156 VKAMLAA-DPNAGLIYICNPNNPTGTVTPRADIEWLLANKPAGSVLLVDEAYIHFSDAPSVVDLVAQRKDLIVLRTFSKL  234 (370)
T ss_pred             HHHHHhc-CCCCCEEEEeCCCCCCCcCcCHHHHHHHHHhCCCCcEEEEECchHHhccCcchHHHHhhCCCEEEEecccHh
Confidence            7888776 4678999999999999999988777777654  48999999999522111 11    112456899999999


Q ss_pred             cccCCCceeeEEEeechhHH
Q 024619          202 IAGHSDVMAGVLAVKGERLA  221 (265)
Q Consensus       202 ~~g~~g~~~G~v~~~~~~~~  221 (265)
                      + |.+|+|+||++++++.+.
T Consensus       235 ~-g~~GlRiG~~v~~~~~i~  253 (370)
T PRK09105        235 Y-GMAGMRLGLAAARPDLLA  253 (370)
T ss_pred             h-cCCccceeeeecCHHHHH
Confidence            9 778999999998765543

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=99.89  E-value=1.5e-22  Score=176.40  Aligned_cols=189  Identities=14%  Similarity=0.113  Sum_probs=133.0

Q ss_pred             CccCCCCChhHHHHHHHHHhHhCCC-ceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEe
Q 024619           47 YDYTRSGNPTRDALESLLAKLDKAD-RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKR  123 (265)
Q Consensus        47 ~~y~~~g~~~~~~l~~~l~~~~g~~-~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~  123 (265)
                      ..|+..|   ..++++.++++++.+ +.+++++|+ +++. ++..++++||+|++++|+|+.+.    ..++..|++++.
T Consensus        55 ~~y~~~~---~~~lr~aia~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~----~~~~~~g~~~~~  127 (353)
T PRK05387         55 RLYPDPN---ADALRQAIAAYYGLDPEQVFVGNGSDEVLAHAFLAFFNHDRPLLFPDITYSFYP----VYAGLYGIPYEE  127 (353)
T ss_pred             hcCCCCc---HHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEeCCCHHHHH----HHHHHcCCEEEE
Confidence            4565443   256677777777765 456666665 8886 67778999999999999997775    445677889888


Q ss_pred             ecCC-----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHc-CCEEEEeCCcCCCCCc----CCCCCCccE
Q 024619          124 VNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH-GALLLVDNSIMSPVLS----RPLELGADI  193 (265)
Q Consensus       124 ~~~~-----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~-~~~li~D~~~~~~~~~----~~~~~~~di  193 (265)
                      ++.+     |++++++    ++++|++++|+||||.+.+.+++.++++.+ ++++|+||+|..-...    .....+.++
T Consensus       128 v~~~~~~~~d~~~l~~----~~~~v~~~~P~NPtG~~~~~~~~~~l~~~~~~~~livDe~y~~~~~~~~~~~~~~~~~~i  203 (353)
T PRK05387        128 IPLDDDFSIDVEDYLR----PNGGIIFPNPNAPTGIALPLAEIERILAANPDSVVVIDEAYVDFGGESAIPLIDRYPNLL  203 (353)
T ss_pred             eecCCCCCCCHHHHHh----cCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCcEEEEeCcccccCCcchHHHHhhCCCEE
Confidence            8754     5676653    467899999999999999999999998876 9999999998632111    111235679


Q ss_pred             EEeccccccccCCCceeeEEEeechhHHHHHHHHHHhc-cCCCChhHHHHHHhccC
Q 024619          194 VMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE-GSGLAPFDCWICLRGVK  248 (265)
Q Consensus       194 ~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~  248 (265)
                      +++|+||.+ +.+|+|.|+++.+++.+ +.+....... ....+...+..+.+.++
T Consensus       204 ~~~S~SK~~-~~~GlR~G~~~~~~~~~-~~l~~~~~~~~~~~~~~~~q~~~~~~l~  257 (353)
T PRK05387        204 VVQTFSKSR-SLAGLRVGFAIGHPELI-EALNRVKNSFNSYPLDRLAQAGAIAAIE  257 (353)
T ss_pred             EEEehhHhh-cchhhhceeeecCHHHH-HHHHHhhccCCCCCcCHHHHHHHHHHhc
Confidence            999999999 67889999998766544 4343333221 22344444444444443

>PRK03321 putative aminotransferase; Provisional

Probab=99.89  E-value=1.3e-22  Score=176.68  Aligned_cols=184  Identities=19%  Similarity=0.220  Sum_probs=137.4

Q ss_pred             hHHHHHHHHHhHhCCC-ceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-----
Q 024619           56 TRDALESLLAKLDKAD-RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~-~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----  127 (265)
                      ...++++.++++++.+ +.+++++|+ +++. ++..++++||+|+++.|+|..+.    ..++..|.+++.++.+     
T Consensus        58 g~~~lr~~ia~~~~~~~~~I~~~~G~~~~l~~~~~~~~~~gd~Vli~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~  133 (352)
T PRK03321         58 GAVELRAALAEHLGVPPEHVAVGCGSVALCQQLVQATAGPGDEVIFAWRSFEAYP----ILVQVAGATPVQVPLTPDHTH  133 (352)
T ss_pred             cHHHHHHHHHHHhCcCHHHEEECCCHHHHHHHHHHHhcCCCCEEEeCCCCHHHHH----HHHHHcCCEEEEccCCCCCCC
Confidence            3567777778888776 467778887 6665 55667899999999999997775    4456678899888864     


Q ss_pred             CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHH--cCCEEEEeCCcCCCCCc----CC----CCCCccEEEec
Q 024619          128 DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA--HGALLLVDNSIMSPVLS----RP----LELGADIVMHS  197 (265)
Q Consensus       128 d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~--~~~~li~D~~~~~~~~~----~~----~~~~~di~~~s  197 (265)
                      |++++++.+.+++++|++++|+||||.+.+.+++.++|++  +++++|+||+|......    .+    ...+..++++|
T Consensus       134 ~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S  213 (352)
T PRK03321        134 DLDAMAAAITDRTRLIFVCNPNNPTGTVVTPAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRT  213 (352)
T ss_pred             CHHHHHHhhccCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEec
Confidence            6899999888889999999999999999999999999987  58999999999743321    11    12246799999


Q ss_pred             cccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhcc
Q 024619          198 ATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV  247 (265)
Q Consensus       198 ~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  247 (265)
                      +||.+ |.+|+|+|+++++++.+ +.+...  ......+...+..+...+
T Consensus       214 ~SK~~-g~~GlRiG~~v~~~~~~-~~~~~~--~~~~~~s~~~q~~a~~~l  259 (352)
T PRK03321        214 FSKAY-GLAGLRVGYAVGHPEVI-AALRKV--AVPFSVNSLAQAAAIASL  259 (352)
T ss_pred             chHHh-hhHHHhhhhhcCCHHHH-HHHHHh--cCCCCCCHHHHHHHHHHh
Confidence            99999 67789999999876544 433332  223445555544443343

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=99.89  E-value=4.2e-22  Score=173.84  Aligned_cols=218  Identities=17%  Similarity=0.202  Sum_probs=140.2

Q ss_pred             eeEeeccCCC-CCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCC-ceEEecchH-HHHH-HH
Q 024619           11 TLLMNFSNEF-DPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD-RALCFTSGM-AALA-AV   86 (265)
Q Consensus        11 ~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~-~~i~~~~g~-~al~-~~   86 (265)
                      ..+++|+ .+ +.+++. +.+..+  +... ..  ....|+..|.   .++++.++++++.+ +.+++++|+ +++. ++
T Consensus        30 ~~~i~l~-~~~~~~~~~-~~~~~~--~~~~-~~--~~~~Y~~~~~---~~lr~~ia~~~~~~~~~I~it~G~~~al~~~~   99 (357)
T PRK14809         30 DDLVKLS-SNENPHGPS-PAAVEA--IREA-AE--RVHSYPKASH---ADLTAALADRWDVSPEQVWLANGGDGALDYLA   99 (357)
T ss_pred             cceeEec-CCCCCCCCC-HHHHHH--HHHH-Hh--hhhcCCCCCH---HHHHHHHHHHhCCCcceEEECCCHHHHHHHHH
Confidence            3689999 44 334432 222222  2111 11  1345654443   45556666666655 466677775 8886 66


Q ss_pred             HHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-------CHHHHHhhcCCCceEEEEecCCCCccccccHH
Q 024619           87 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICDIR  159 (265)
Q Consensus        87 ~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~  159 (265)
                      ..++++||.|++++|+|+.+.    ..++..|.+++.++++       +.+++.+.. +++++|++++|+||||.+.+.+
T Consensus       100 ~~~~~~gd~V~v~~P~y~~~~----~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~-~~~k~i~l~~p~NPTG~~~s~~  174 (357)
T PRK14809        100 RAMLDPGDTVLVPDPGFAYYG----MSARYHHGEVREYPVSKADDFEQTADTVLDAY-DGERIVYLTSPHNPTGSEIPLD  174 (357)
T ss_pred             HHhcCCCCEEEEeCCChHHHH----HHHHHcCCeEEEEecccCcCCCcCHHHHHHhh-cCCcEEEEeCCCCCCCcCCCHH
Confidence            778999999999999998775    3345566777766542       455665554 4689999999999999999877


Q ss_pred             HHHHHHHHc--CCEEEEeCCcCCCCCc-C----CCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhcc
Q 024619          160 KIAEMAHAH--GALLLVDNSIMSPVLS-R----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG  232 (265)
Q Consensus       160 ~i~~~a~~~--~~~li~D~~~~~~~~~-~----~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~  232 (265)
                      ++.++++..  +++||+||+|..-... .    ....+..+++.||||.+ +.+|+|+||++++++.+.. +...+  ..
T Consensus       175 ~~~~l~~~~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~-~~~GlRiG~~~~~~~~~~~-~~~~~--~~  250 (357)
T PRK14809        175 EVEALAERTDEETLVVVDEAYGEFAERPSAVALVEERDDVAVLRTFSKAY-GLAGLRLGYAVVPEEWADA-YARVN--TP  250 (357)
T ss_pred             HHHHHHHhCccCcEEEEechhhhccCCchhHHHHhhCCCEEEEecchhHh-cCcchhheeeecCHHHHHH-HHHhC--CC
Confidence            766666553  7899999999743321 1    11234679999999999 6788999999988765433 32222  22


Q ss_pred             CCCChhHHHHHHhcc
Q 024619          233 SGLAPFDCWICLRGV  247 (265)
Q Consensus       233 ~~~~~~~~~~~~~~l  247 (265)
                      ...+...+..+...+
T Consensus       251 ~~~~~~~~~~a~~~l  265 (357)
T PRK14809        251 FAASELACRAGLAAL  265 (357)
T ss_pred             CCCCHHHHHHHHHHh
Confidence            344555444444444

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=99.89  E-value=4e-22  Score=176.58  Aligned_cols=162  Identities=23%  Similarity=0.311  Sum_probs=134.9

Q ss_pred             hHHHHHHHHHhHhCC-C-ceEEecch-HHHHH-HHHHh----cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC
Q 024619           56 TRDALESLLAKLDKA-D-RALCFTSG-MAALA-AVTHL----LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC  127 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~-~-~~i~~~~g-~~al~-~~~~~----~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  127 (265)
                      ..+++++.+++++|+ + +.+++++| ++++. ++.++    +++||+|++++++|++....|...++..|++++.++.+
T Consensus        64 ~~~~~r~~la~~~g~~~~~~i~~~~~~t~~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~  143 (401)
T PRK10874         64 RYEAAREQVAQLLNAPDAKNIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLG  143 (401)
T ss_pred             HHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecC
Confidence            477899999999998 4 45655555 58886 45555    37899999999999987666767778889999988753


Q ss_pred             -----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEeccccc
Q 024619          128 -----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKF  201 (265)
Q Consensus       128 -----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~  201 (265)
                           |++++++.+.+++++|++++++||||.+.|+++|+++|+++|+++++|++|+.+... +....+.|++++|++|+
T Consensus       144 ~~~~~d~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~  223 (401)
T PRK10874        144 ADRLPDVDLLPELITPRTRILALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQGAVHFPADVQALDIDFYAFSGHKL  223 (401)
T ss_pred             CCCcCCHHHHHHhcCcCcEEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEECCcccccccCCchhcCCCEEEEecccc
Confidence                 789999999999999999999999999999999999999999999999999877664 23345799999999997


Q ss_pred             cccCCCceeeEEEeechhH
Q 024619          202 IAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       202 ~~g~~g~~~G~v~~~~~~~  220 (265)
                      + ||+|+  |+++.+++.+
T Consensus       224 ~-gp~G~--G~l~~~~~~~  239 (401)
T PRK10874        224 Y-GPTGI--GVLYGKSELL  239 (401)
T ss_pred             c-CCCcc--EEEEEchHHH
Confidence            6 78885  8988877544

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=99.89  E-value=3.8e-22  Score=174.03  Aligned_cols=160  Identities=18%  Similarity=0.227  Sum_probs=120.8

Q ss_pred             HHHHHHHHHhHhCCC-ceEEecchH-HHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-----CH
Q 024619           57 RDALESLLAKLDKAD-RALCFTSGM-AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DL  129 (265)
Q Consensus        57 ~~~l~~~l~~~~g~~-~~i~~~~g~-~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----d~  129 (265)
                      ..++++.++++++.+ +.+++++|+ +++..+...+.+|+ +++..|+|..+.    ..++..|.+++.++.+     ++
T Consensus        57 ~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~l~~g~-viv~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~  131 (356)
T PRK08056         57 YRHLHQALARHHQVPASWILAGNGETESIFAVVSGLKPRR-AMIVTPGFAEYR----RALQQVGCEIRRYSLREADGWQL  131 (356)
T ss_pred             HHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHhCCCC-EEEeCCCcHHHH----HHHHHcCCeEEEEecccccCCCc
Confidence            567777777777766 566777776 88864444457776 677789998876    4557789999988753     12


Q ss_pred             -HHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc------CCCCCCccEEEeccc
Q 024619          130 -DEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS------RPLELGADIVMHSAT  199 (265)
Q Consensus       130 -~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~------~~~~~~~di~~~s~s  199 (265)
                       +++++.+.+++++|++++|+||||.+.+   +++|+++|+++++++|+||+|......      .....+.++++.|+|
T Consensus       132 ~~~~~~~~~~~~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~S  211 (356)
T PRK08056        132 TDAILEALTPDLDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADNPHLWVLRSLT  211 (356)
T ss_pred             cHHHHHhccCCCCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccCCCEEEEEech
Confidence             3555666788999999999999999987   788999999999999999998643221      111335789999999


Q ss_pred             cccccCCCceeeEEEeechhHHH
Q 024619          200 KFIAGHSDVMAGVLAVKGERLAK  222 (265)
Q Consensus       200 K~~~g~~g~~~G~v~~~~~~~~~  222 (265)
                      |++ +.+|+|+||+++++..+.+
T Consensus       212 K~~-~~~G~RiG~~v~~~~~~~~  233 (356)
T PRK08056        212 KFY-AIPGLRLGYLVNSDDAAVA  233 (356)
T ss_pred             hhc-cCcchhheeeecCCHHHHH
Confidence            999 7789999999886544433

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=99.89  E-value=5.3e-22  Score=171.82  Aligned_cols=209  Identities=19%  Similarity=0.220  Sum_probs=150.8

Q ss_pred             CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCC-hhHHHHHHHHHhHhCC--CceEEecchHHHHH-HHHHhcCCCC
Q 024619           19 EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGN-PTRDALESLLAKLDKA--DRALCFTSGMAALA-AVTHLLGTGE   94 (265)
Q Consensus        19 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~-~~~~~l~~~l~~~~g~--~~~i~~~~g~~al~-~~~~~~~~g~   94 (265)
                      .|||+|+..+|.+..+......       .|+  |. +..+++++.+++++|.  ++++++++|.+|+. ++.+++++||
T Consensus        26 ~~~ylgl~~~~~~~~~~~~~~~-------~~~--g~~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~~~gd   96 (346)
T TIGR03576        26 LYDLTGLAGGFKIDEEDLELLE-------TYV--GPAIFEEKVQELGREHLGGPEEKILVFNRTSSAILATILALEPPGR   96 (346)
T ss_pred             ccccccCCCChhHHHHHHHHHH-------Hhc--CCHHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhCCCCC
Confidence            6899999999998876433211       232  44 5699999999999998  67888888889985 7788899999


Q ss_pred             EEEEc---CCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCcccc---ccHHHHHHHHHHc
Q 024619           95 EIVAG---DDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQI---CDIRKIAEMAHAH  168 (265)
Q Consensus        95 ~viv~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~---~~l~~i~~~a~~~  168 (265)
                      +|++.   .|.|.++.    ..++..|.++..  ..++++++.  .+++++|+++. +||+|.+   .++++|+++|+++
T Consensus        97 ~Vli~~~d~p~~~s~~----~~~~l~ga~~~~--~~~l~~l~~--~~~~~lIiitg-~s~~G~v~~~~~L~~i~~la~~~  167 (346)
T TIGR03576        97 KVVHYLPEKPAHPSIP----RSCKLAGAEYFE--SDELSELKK--IDGTSLVVITG-STMDLKVVSEEDLKRVIKQAKSK  167 (346)
T ss_pred             EEEECCCCCCCchhHH----HHHHHcCCEEec--cCCHHHHhh--CcCceEEEEEC-CCCCCcccCHHHHHHHHHHHHHc
Confidence            99875   46777765    445667777643  346666533  35678888875 5899998   6899999999999


Q ss_pred             CCEEEEeCCcCCCCCc---C--CCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHH
Q 024619          169 GALLLVDNSIMSPVLS---R--PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC  243 (265)
Q Consensus       169 ~~~li~D~~~~~~~~~---~--~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (265)
                      |+++++||+|+.+...   .  ....+.|+++.|+||++.   |+++|+++++++.+ +.+...........+++.++.+
T Consensus       168 ~~~livDEAy~~~~~~~~~~~~~~~~~~divv~s~SKala---G~r~G~v~~~~~li-~~l~~~~~~~~~s~~~~~~~aa  243 (346)
T TIGR03576       168 EAIVLVDDASGARVRRLYGQPPALDLGADLVVTSTDKLMD---GPRGGLLAGRKELV-DKIKSVGEQFGLEAQAPLLAAV  243 (346)
T ss_pred             CCEEEEECCccccccccCCCCCHHHcCCcEEEeccchhcc---ccceEEEEeCHHHH-HHHHHhhcCcccCccHHHHHHH
Confidence            9999999999976532   1  123356899999999653   45789999877544 4444444333333455565555


Q ss_pred             HhccCc
Q 024619          244 LRGVKT  249 (265)
Q Consensus       244 ~~~l~~  249 (265)
                      +..|+.
T Consensus       244 ~~aL~~  249 (346)
T TIGR03576       244 VRALEE  249 (346)
T ss_pred             HHHHhh
Confidence            555544

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>PLN02397 aspartate transaminase

Probab=99.89  E-value=9.2e-22  Score=175.15  Aligned_cols=164  Identities=16%  Similarity=0.155  Sum_probs=122.5

Q ss_pred             CCccCCC-CCh-hHHHHHHHHHhHhCCC---c-e----EEecchHHHH-HHHHHhcCCCCEEEEcCCCCCChHHHHHhhc
Q 024619           46 PYDYTRS-GNP-TRDALESLLAKLDKAD---R-A----LCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVT  114 (265)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~-~----i~~~~g~~al-~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~  114 (265)
                      ...|++. |.+ +|+++.+++.+..+..   + +    ++.++|+.++ ..++.++.|||+|++++|+|+.+.    ..+
T Consensus        84 ~~~Y~~~~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~l~~~~~~~~~pGd~Vlv~~P~y~~y~----~~~  159 (423)
T PLN02397         84 NKEYLPIEGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGSLRLGAEFLARFYPGSTIYIPNPTWGNHH----NIF  159 (423)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHcCCCCchhhcCeeEeeecccchHHHHHHHHHHHHhCCCCEEEEeCCCchhHH----HHH
Confidence            3469888 887 5899999886654321   2 2    2233344334 355666679999999999999997    555


Q ss_pred             CCCCeEEEeecC-------CCHHHHHhhcC---CCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCC
Q 024619          115 PKTGVVVKRVNT-------CDLDEVASAIG---PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSP  181 (265)
Q Consensus       115 ~~~g~~~~~~~~-------~d~~~l~~~~~---~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~  181 (265)
                      +..|.+++.++.       .|++.+++.+.   ++++++++++||||||.+.+   +++|+++|++||++||+||+|..-
T Consensus       160 ~~~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l  239 (423)
T PLN02397        160 RDAGVPVRTYRYYDPKTRGLDFDGLLEDLKAAPDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGF  239 (423)
T ss_pred             HHcCCeEEEeecccCcCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCc
Confidence            778889888864       26777766654   56788999999999999965   678999999999999999999754


Q ss_pred             CCcC------C---C--CCCccEEEeccccccccCCCceeeEEE
Q 024619          182 VLSR------P---L--ELGADIVMHSATKFIAGHSDVMAGVLA  214 (265)
Q Consensus       182 ~~~~------~---~--~~~~di~~~s~sK~~~g~~g~~~G~v~  214 (265)
                      .+..      +   .  ..+..++++||||.+ +++|+|+||++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~-~~~G~RvG~~v  282 (423)
T PLN02397        240 ASGDLDADAQSVRMFVEDGHEILVAQSYAKNM-GLYGERVGALS  282 (423)
T ss_pred             cCCchhhhhHHHHHHHhcCCcEEEEEECcccC-CCccccceEEE
Confidence            4321      0   1  112479999999999 78899999985

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=99.89  E-value=4.5e-22  Score=172.33  Aligned_cols=209  Identities=18%  Similarity=0.182  Sum_probs=143.0

Q ss_pred             eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCC--ceEEecchH-HHHHHHH
Q 024619           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD--RALCFTSGM-AALAAVT   87 (265)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~--~~i~~~~g~-~al~~~~   87 (265)
                      ..+++|++.-+.+|+.+++.. ..          ....|+.   +. .++++.+++++|..  +.+++++|+ +++.++.
T Consensus        24 ~~~i~ls~Nenp~~~~~~~~~-~~----------~~~~Yp~---~~-~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~~l~   88 (339)
T PRK06959         24 DAWLDLSTGINPHGYPVPPVP-AD----------AWRRLPE---DD-DGLAACAARYYGAPDAAHVLPVAGSQAAIRALP   88 (339)
T ss_pred             hhhceeccCCCCCCCCCCCCC-HH----------HHHhCCC---ch-HHHHHHHHHHhCCCCcccEEECcCHHHHHHHHH
Confidence            457999955555665533321 10          1122432   34 88999999999884  577778876 8887666


Q ss_pred             HhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHH---HHHHH
Q 024619           88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIR---KIAEM  164 (265)
Q Consensus        88 ~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~---~i~~~  164 (265)
                      .++++|+ |+++.|+|+.+.    ..++..|++++.++.++ +.    +.++++++++++||||||.+.+.+   +|++.
T Consensus        89 ~~~~~g~-v~v~~P~y~~y~----~~~~~~g~~~~~v~~~~-~~----~~~~~~~v~l~nPnNPTG~~~s~~~l~~l~~~  158 (339)
T PRK06959         89 ALLPRGR-VGIAPLAYSEYA----PAFARHGHRVVPLDEAA-DT----LPAALTHLIVVNPNNPTAERLPAARLLRWHAQ  158 (339)
T ss_pred             HhcCCCe-EEEcCCCcHHHH----HHHHHCCCEEEeecccc-hh----ccccCCEEEEeCCCCCCCCCCCHHHHHHHHHH
Confidence            6788877 888999999986    55577899999888755 32    334567899999999999997754   45555


Q ss_pred             HHHcCCEEEEeCCcCCCCCc-C---CCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHH
Q 024619          165 AHAHGALLLVDNSIMSPVLS-R---PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC  240 (265)
Q Consensus       165 a~~~~~~li~D~~~~~~~~~-~---~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (265)
                      |++++.++|+||+|...... .   ....+..+++.||||.+ |.+|+|.||++++++.+ +.+.....  ...++...+
T Consensus       159 ~~~~~~~vI~DEay~~~~~~~s~~~~~~~~~vi~l~SfSK~~-gl~GlRiGy~v~~~~li-~~l~~~~~--~~~vs~~~q  234 (339)
T PRK06959        159 LAARGGTLIVDEAFADTLPAASLAAHTDRPGLVVLRSVGKFF-GLAGVRAGFVLAAPALL-AALRDALG--AWTVSGPAR  234 (339)
T ss_pred             HHHcCCEEEEECCCccCCCcccchhccCCCCEEEEecChhhc-CCcchheEEEecCHHHH-HHHHHhcC--CCCCcHHHH
Confidence            67889999999999854321 1   11224469999999999 77899999999876544 43333322  233455554


Q ss_pred             HHHHhccC
Q 024619          241 WICLRGVK  248 (265)
Q Consensus       241 ~~~~~~l~  248 (265)
                      ..+...|+
T Consensus       235 ~a~~~~L~  242 (339)
T PRK06959        235 HAVRAAFA  242 (339)
T ss_pred             HHHHHHhC
Confidence            44444443

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=99.89  E-value=6.1e-22  Score=173.66  Aligned_cols=200  Identities=20%  Similarity=0.240  Sum_probs=140.7

Q ss_pred             eEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CChhHHHHHHHHHhHhCCC-ceEEecchH-HHHH-HHH
Q 024619           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLDKAD-RALCFTSGM-AALA-AVT   87 (265)
Q Consensus        12 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~g~~-~~i~~~~g~-~al~-~~~   87 (265)
                      .+++|+...+.++  +++.+.... ...  . .....|++. |    .++++.+++++|.+ +.+++++|+ +++. ++.
T Consensus        37 ~~i~l~~~~~~~~--~~~~~~~al-~~~--~-~~~~~Y~~~~g----~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~  106 (371)
T PRK05166         37 RIAKLGSNENPLG--PSPAVRRAF-ADI--A-ELLRLYPDPQG----RALREAIAARTGVPADRIILGNGSEDLIAVICR  106 (371)
T ss_pred             ceEEcCCCCCCCC--CCHHHHHHH-HHH--H-HHhhcCCCCcH----HHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHH
Confidence            6789983323344  333333322 111  1 123456655 3    25777777778766 567777776 8886 567


Q ss_pred             HhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHH
Q 024619           88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIA  162 (265)
Q Consensus        88 ~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~  162 (265)
                      .++++||.|+++.|+|+.+.    ..++..|++++.++.+     |++++++.+.+++++|++++|+||||.+.+.+++.
T Consensus       107 ~~~~~gd~vli~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~  182 (371)
T PRK05166        107 AVLRPGDRVVTLYPSFPLHE----DYPTMMGARVERVTVTPDLGFDLDALCAAVARAPRMLMFSNPSNPVGSWLTADQLA  182 (371)
T ss_pred             HhcCCCCEEEEcCCChHHHH----HHHHHcCCeEEEeecCCCCCCCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHHHHH
Confidence            77899999999999998775    5557789999888764     68999998888899999999999999999876666


Q ss_pred             HHHHH--cCCEEEEeCCcCCCCCc----CC---C--CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHH
Q 024619          163 EMAHA--HGALLLVDNSIMSPVLS----RP---L--ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF  226 (265)
Q Consensus       163 ~~a~~--~~~~li~D~~~~~~~~~----~~---~--~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~  226 (265)
                      ++++.  .++++|+||+|......    ..   .  ..+..++++||||.+ +.+|+|.||++.++..+.+.+..
T Consensus       183 ~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~-~l~GlRiG~~i~~~~~l~~~~~~  256 (371)
T PRK05166        183 RVLDATPPETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAY-GLAGLRVGYGLVSDPELVGLLDR  256 (371)
T ss_pred             HHHHhCCCCcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhh-hcchhheeeeecCCHHHHHHHHH
Confidence            65553  37899999998643321    11   1  113569999999999 67889999987766555554443

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=99.89  E-value=1.8e-22  Score=176.05  Aligned_cols=167  Identities=19%  Similarity=0.219  Sum_probs=128.5

Q ss_pred             CCccCCCCChhHHHHHHHHHhHhCCC--ceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEE
Q 024619           46 PYDYTRSGNPTRDALESLLAKLDKAD--RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVV  121 (265)
Q Consensus        46 ~~~y~~~g~~~~~~l~~~l~~~~g~~--~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~  121 (265)
                      ...|++.|   ..++++.+++++|.+  +.+++++|+ +++. ++..++++||+|++++|+|..+.    ..++..|+++
T Consensus        57 ~~~Y~~~~---~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~~~~~~~gd~vlv~~P~y~~~~----~~~~~~g~~~  129 (356)
T PRK04870         57 LNRYPDPR---AAALKAALRAAMGVPAGADVLLGNGSDELIQLLALACAKPGATVLAPEPGFVMYR----MSAKLAGLEF  129 (356)
T ss_pred             cccCCCCC---HHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHHHHHhcCCCCEEEECCCCHHHHH----HHHHHcCCEE
Confidence            34566543   356666777777754  367788887 7776 55667899999999999998875    5567889999


Q ss_pred             EeecCC-----CHHHHHhhcC-CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc----CCCCCCc
Q 024619          122 KRVNTC-----DLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS----RPLELGA  191 (265)
Q Consensus       122 ~~~~~~-----d~~~l~~~~~-~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~----~~~~~~~  191 (265)
                      +.++.+     |++++++.+. .++++|++++|+||||.+.+.+++.++++..++++|+||+|......    .....+.
T Consensus       130 ~~i~~~~~~~~d~~~l~~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~  209 (356)
T PRK04870        130 VGVPLTADFTLDLPAMLAAIAEHRPALVFLAYPNNPTGNLFDDADVERIIEAAPGLVVVDEAYQPFAGDSWLPRLARFPN  209 (356)
T ss_pred             EEecCCCCCCCCHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCchhhcCcchHHHHhhCCC
Confidence            998754     6899999886 58999999999999999999888877777768999999999642221    1112346


Q ss_pred             cEEEeccccccccCCCceeeEEEeechhHH
Q 024619          192 DIVMHSATKFIAGHSDVMAGVLAVKGERLA  221 (265)
Q Consensus       192 di~~~s~sK~~~g~~g~~~G~v~~~~~~~~  221 (265)
                      .+++.|+|| + +.+|+|+|+++++++.+.
T Consensus       210 vi~~~S~SK-~-~~~GlRiG~~i~~~~~i~  237 (356)
T PRK04870        210 LLVMRTVSK-L-GLAGLRLGYLAGHPAWIA  237 (356)
T ss_pred             EEEEecchh-h-hhHHHhhhhhhCCHHHHH
Confidence            799999999 6 678999999998765443

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=99.89  E-value=8.6e-22  Score=172.96  Aligned_cols=163  Identities=25%  Similarity=0.322  Sum_probs=136.0

Q ss_pred             hhHHHHHHHHHhHhCCC--ceEEe-cchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC---
Q 024619           55 PTRDALESLLAKLDKAD--RALCF-TSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~--~~i~~-~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---  127 (265)
                      +..+++++.+++++|.+  +.+++ +++++++. ++.+++++||+|++..++|+++...+...++..|.+++.++.+   
T Consensus        44 ~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~  123 (376)
T TIGR01977        44 REVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKGLLKEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCDNEG  123 (376)
T ss_pred             HHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHhccCCCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCC
Confidence            45888999999999975  24555 45568885 6677889999999999999988776666677779999888753   


Q ss_pred             --CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEecccccccc
Q 024619          128 --DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAG  204 (265)
Q Consensus       128 --d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~~~g  204 (265)
                        |++++++++.+++++|++++++||||.+.|+++|.++|+++|+++++|++|+.|... .....+.|++++|++||+++
T Consensus       124 ~~d~~~l~~~~~~~~~~v~~~~~~n~tG~~~~~~~i~~l~~~~~~~livD~a~~~g~~~~~~~~~~~D~~~~s~~K~l~~  203 (376)
T TIGR01977       124 LISPERIKRAIKTNTKLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQTAGVIPIDMTELAIDMLAFTGHKGLLG  203 (376)
T ss_pred             CcCHHHHHHhcCCCCeEEEEECCCCCccccCCHHHHHHHHHHcCCEEEEEhhhccCccCCCchhcCCCEEEecccccccC
Confidence              799999999889999999999999999999999999999999999999999988775 33456899999999999988


Q ss_pred             CCCceeeEEEeechh
Q 024619          205 HSDVMAGVLAVKGER  219 (265)
Q Consensus       205 ~~g~~~G~v~~~~~~  219 (265)
                      |.|.  |+++.+++.
T Consensus       204 p~g~--g~l~~~~~~  216 (376)
T TIGR01977       204 PQGT--GGLYIREGI  216 (376)
T ss_pred             CCCc--eEEEEcCCc
Confidence            8885  555555543

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=99.89  E-value=3e-22  Score=175.80  Aligned_cols=169  Identities=15%  Similarity=0.211  Sum_probs=124.9

Q ss_pred             CccCCCCCh-hHHHHHHHHHhHhC----CC-ceEEecchH-HHHH-HHHHhcCCCC-EEEEcCCCCCChHHHHHhhcCCC
Q 024619           47 YDYTRSGNP-TRDALESLLAKLDK----AD-RALCFTSGM-AALA-AVTHLLGTGE-EIVAGDDLYGGTDRLLSRVTPKT  117 (265)
Q Consensus        47 ~~y~~~g~~-~~~~l~~~l~~~~g----~~-~~i~~~~g~-~al~-~~~~~~~~g~-~viv~~~~~~~~~~~~~~~~~~~  117 (265)
                      ..|+..|.+ +++++++++.+.++    .+ +.|++++|+ +++. ++..++.+|| .|++++|+|+.+.    ..++..
T Consensus        61 ~~Y~~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~----~~~~~~  136 (374)
T PRK02610         61 NRYPDGGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELIRSLLIATCLGGEGSILVAEPTFSMYG----ILAQTL  136 (374)
T ss_pred             cCCCCCchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHHHHHHHHHHcCCCCCeEEEcCCChHHHH----HHHHHc
Confidence            457655775 58888888876542    33 456677776 8886 5667777886 8999999999886    556778


Q ss_pred             CeEEEeecCC------CHHHHHhhcC----CCceEEEEecCCCCccccccHHHHHHHHHH-cCCEEEEeCCcCCCCCc--
Q 024619          118 GVVVKRVNTC------DLDEVASAIG----PWTKLVWVESPTNPRQQICDIRKIAEMAHA-HGALLLVDNSIMSPVLS--  184 (265)
Q Consensus       118 g~~~~~~~~~------d~~~l~~~~~----~~~~~i~~~~~~np~G~~~~l~~i~~~a~~-~~~~li~D~~~~~~~~~--  184 (265)
                      |++++.++.+      |++++++++.    +++++|++++|+||||.+.+.+++.++++- ++++||+||+|......  
T Consensus       137 g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~l~~~~~~~~iI~De~Y~~~~~~~~  216 (374)
T PRK02610        137 GIPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVHPNSPTGNPLTAAELEWLRSLPEDILVVIDEAYFEFSQTTL  216 (374)
T ss_pred             CCEEEEecCCcccCCCCHHHHHHHHHhhcCCCceEEEEeCCCCCCCCCCCHHHHHHHHhccCCcEEEEeccccccCccch
Confidence            9999988753      6788888775    479999999999999999876555444321 48999999999743221  


Q ss_pred             --CCCCCCccEEEeccccccccCCCceeeEEEeechhH
Q 024619          185 --RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       185 --~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                        ........+++.||||.+ |.+|+|+||++++++.+
T Consensus       217 ~~~~~~~~~~ivi~SfSK~~-g~~GlRiG~~v~~~~l~  253 (374)
T PRK02610        217 VGELAQHPNWVILRTFSKAF-RLAAHRVGYAIGHPELI  253 (374)
T ss_pred             HHHHhcCCCEEEEEecchhc-cCcccceeeeecCHHHH
Confidence              111223468899999999 67899999999866544

>PRK04311 selenocysteine synthase; Provisional

Probab=99.88  E-value=7.4e-22  Score=175.83  Aligned_cols=205  Identities=23%  Similarity=0.275  Sum_probs=153.5

Q ss_pred             hhHHHHHHHHHhHhCCCceEEecchHHHHHHHHHhcCCCCEEEEcCCCCCC---hHHHHHhhcCCCCeEEEeecC---CC
Q 024619           55 PTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGG---TDRLLSRVTPKTGVVVKRVNT---CD  128 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~g~~al~~~~~~~~~g~~viv~~~~~~~---~~~~~~~~~~~~g~~~~~~~~---~d  128 (265)
                      +..+.+++.+++++|+++.+++++|++|+.+++..+.+||+|++++..+..   ... +....+..|+++++++.   .+
T Consensus       127 ~r~~~~e~~lA~l~Gae~a~vv~sgtaAl~l~l~~l~~GdeVIvs~~e~~~~ggs~~-i~~~~~~~G~~l~~v~~~~~t~  205 (464)
T PRK04311        127 SRDRALAALLCALTGAEDALVVNNNAAAVLLALNALAAGKEVIVSRGELVEIGGAFR-IPDVMRQAGARLVEVGTTNRTH  205 (464)
T ss_pred             hHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHhCCCCEEEEcchhhhhcCcchh-hHHHHHHCCcEEEEECCCCCCC
Confidence            447899999999999999999999999987655667899999999875542   222 23455778999999985   47


Q ss_pred             HHHHHhhcCCCceEEEEecCCCC--cc--ccccHHHHHHHHHHcCCEEEEeCCcCC------------CCCcCCCCCCcc
Q 024619          129 LDEVASAIGPWTKLVWVESPTNP--RQ--QICDIRKIAEMAHAHGALLLVDNSIMS------------PVLSRPLELGAD  192 (265)
Q Consensus       129 ~~~l~~~~~~~~~~i~~~~~~np--~G--~~~~l~~i~~~a~~~~~~li~D~~~~~------------~~~~~~~~~~~d  192 (265)
                      ++++++++++++++|++++++|+  +|  ...|+++|+++|++||+++++|.+.+.            +....+.+.++|
T Consensus       206 ~~dle~aI~~~TklV~~vh~sN~~i~G~~~~~dl~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~GaD  285 (464)
T PRK04311        206 LRDYEQAINENTALLLKVHTSNYRIEGFTKEVSLAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAGVD  285 (464)
T ss_pred             HHHHHHhcCccCeEEEEEcCCCccccccCCcCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhHHhcCCc
Confidence            89999999999999999999998  35  567999999999999999999995321            111234457899


Q ss_pred             EEEeccccccccCCCceeeEEEeechhHHHHHH------HH----------HHhccCCCChhHHHHHHhccCchHhhHHH
Q 024619          193 IVMHSATKFIAGHSDVMAGVLAVKGERLAKELY------FL----------QNAEGSGLAPFDCWICLRGVKTMALRVEK  256 (265)
Q Consensus       193 i~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~------~~----------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  256 (265)
                      ++++|.+|+++||.   +|+++++++.+.. +.      .+          .......+++..++..++.++.+..++++
T Consensus       286 iv~fSg~K~LgGp~---~G~i~g~~~li~~-l~~~~~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~  361 (464)
T PRK04311        286 LVTFSGDKLLGGPQ---AGIIVGKKELIAR-LKKHPLKRALRVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEE  361 (464)
T ss_pred             EEEecCcccccCCc---eEEEEEcHHHHHH-HhhchhHHHHhcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHH
Confidence            99999999997773   7999888765532 22      11          11222333444455566667777888888


Q ss_pred             Hhhchhcc
Q 024619          257 QQVCFFDL  264 (265)
Q Consensus       257 ~~~~~~~l  264 (265)
                      +++++.++
T Consensus       362 ~~~~A~~l  369 (464)
T PRK04311        362 LRARAERL  369 (464)
T ss_pred             HHHHHHHH
Confidence            88877654

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=99.88  E-value=1.1e-21  Score=174.10  Aligned_cols=162  Identities=19%  Similarity=0.244  Sum_probs=135.5

Q ss_pred             hHHHHHHHHHhHhCC-C-ceEEecch-HHHHH-HHHH----hcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC
Q 024619           56 TRDALESLLAKLDKA-D-RALCFTSG-MAALA-AVTH----LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC  127 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~-~-~~i~~~~g-~~al~-~~~~----~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  127 (265)
                      ..+++++.+++++|. + +.+++++| ++++. ++..    ++++||+|++++++|++....|...++..|++++.++.+
T Consensus        68 ~~~~~r~~la~~~~~~~~~~v~~t~g~t~~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~  147 (406)
T PRK09295         68 KMENVRKQAALFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLN  147 (406)
T ss_pred             HHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecC
Confidence            477899999999986 3 45666666 48886 4443    468999999999999988777767778889999988753


Q ss_pred             -----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcC-CCCCCccEEEeccccc
Q 024619          128 -----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR-PLELGADIVMHSATKF  201 (265)
Q Consensus       128 -----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~-~~~~~~di~~~s~sK~  201 (265)
                           |++++++++.+++++|++++++||||.+.|+++|+++|+++|+++++|++|+.+.... ....+.|++++|++|+
T Consensus       148 ~~~~~d~~~l~~~i~~~t~lv~l~~~~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K~  227 (406)
T PRK09295        148 PDGTLQLETLPALFDERTRLLAITHVSNVLGTENPLAEMIALAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKL  227 (406)
T ss_pred             CCCCCCHHHHHHhcCCCcEEEEEecchhcccccCCHHHHHHHHHHcCCEEEEEcccccCccccCchhcCCCEEEeehhhc
Confidence                 7899999998899999999999999999999999999999999999999999887653 3356899999999996


Q ss_pred             cccCCCceeeEEEeechhH
Q 024619          202 IAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       202 ~~g~~g~~~G~v~~~~~~~  220 (265)
                      + ||+|  .|+++.+++.+
T Consensus       228 ~-gp~G--~G~l~~~~~~~  243 (406)
T PRK09295        228 Y-GPTG--IGILYVKEALL  243 (406)
T ss_pred             c-CCCC--cEEEEEchHhH
Confidence            6 7888  48998887654

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=99.88  E-value=6.2e-22  Score=173.50  Aligned_cols=197  Identities=20%  Similarity=0.191  Sum_probs=142.6

Q ss_pred             ceeEeeccCCCCCCCCCCCCeeeccccccCCCC--C----CCCCccCCC--CC-hhHHHHHHHHHhHhCCCceEEecchH
Q 024619           10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSAT--E----NGPYDYTRS--GN-PTRDALESLLAKLDKADRALCFTSGM   80 (265)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~----~~~~~y~~~--g~-~~~~~l~~~l~~~~g~~~~i~~~~g~   80 (265)
                      +..+++|+ +|||+|...+|.+...........  .    ..+..-++.  |. +..+++++.+++++|.++.+++++|+
T Consensus         3 ~~~~~~~~-s~~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~~~l~~~sG~   81 (370)
T PRK05937          3 ESLSIDFV-TNDFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAPEAFIVPSGY   81 (370)
T ss_pred             CCceEEeE-CCCccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCCeEEEECChH
Confidence            45789999 999999999998877653321111  0    011111221  33 46999999999999999899999999


Q ss_pred             HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcC------CCceEEEEecCCCCcc
Q 024619           81 AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG------PWTKLVWVESPTNPRQ  153 (265)
Q Consensus        81 ~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~------~~~~~i~~~~~~np~G  153 (265)
                      .++. ++..+.++||.|+++...|.+....+.. .  .+.. +.++..|++++++.+.      +++.+|++++++|++|
T Consensus        82 ~a~~~~~~~~~~~~d~ii~d~~~H~sv~~~~~~-~--~~~~-~~~~~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G  157 (370)
T PRK05937         82 MANLGLCAHLSSVTDYVLWDEQVHISVVYSLSV-I--SGWH-QSFRHNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKG  157 (370)
T ss_pred             HHHHHHHHHhCCCCCEEEEEhhhhHHHHHHHHH-c--CCce-EEecCCCHHHHHHHHHhhhccCCCcEEEEEecCCCCCC
Confidence            7765 4444557788888888888777766532 2  2333 3456778888888775      2456778899999999


Q ss_pred             ccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCC-----CC---CccEEEeccccccccCCCceeeEEE
Q 024619          154 QICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPL-----EL---GADIVMHSATKFIAGHSDVMAGVLA  214 (265)
Q Consensus       154 ~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~-----~~---~~di~~~s~sK~~~g~~g~~~G~v~  214 (265)
                      .+.|+++|.++|+++|+++++||+|+.|.++...     .+   +.++.+.|++|.+ |+.|  +|++.
T Consensus       158 ~i~pl~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~-g~~G--~~vl~  223 (370)
T PRK05937        158 TLAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKAL-GSMG--AALLS  223 (370)
T ss_pred             CccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhh-hcCc--eEEEc
Confidence            9999999999999999999999999988765221     12   2346788999999 5655  34443

>PRK09275 aspartate aminotransferase; Provisional

Probab=99.88  E-value=8.9e-22  Score=177.14  Aligned_cols=168  Identities=18%  Similarity=0.246  Sum_probs=126.1

Q ss_pred             ccCCC-CCh-hHHHHHHHHHh-Hh-C---C--CceEEecch-HHHHH-HHHH-----hcCCCCEEEEcCCCCCChHHHHH
Q 024619           48 DYTRS-GNP-TRDALESLLAK-LD-K---A--DRALCFTSG-MAALA-AVTH-----LLGTGEEIVAGDDLYGGTDRLLS  111 (265)
Q Consensus        48 ~y~~~-g~~-~~~~l~~~l~~-~~-g---~--~~~i~~~~g-~~al~-~~~~-----~~~~g~~viv~~~~~~~~~~~~~  111 (265)
                      .|++. |.+ +++++.+++.+ .+ +   .  ++.|++++| ++|+. ++.+     +++|||+|++++|.|+.|.... 
T Consensus       129 ~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~-  207 (527)
T PRK09275        129 NYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIP-  207 (527)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHH-
Confidence            48888 876 59998885543 32 2   1  225666665 48885 5554     6899999999999999997442 


Q ss_pred             hhcCCCCeEEEeecC-------CCHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHH--cCCEEEEeCCcC
Q 024619          112 RVTPKTGVVVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHA--HGALLLVDNSIM  179 (265)
Q Consensus       112 ~~~~~~g~~~~~~~~-------~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~--~~~~li~D~~~~  179 (265)
                      . ....+.+++.++.       .|.+++++++.+++++|++++|+||||.+.+   +++|+++|++  ++++||+||+|+
T Consensus       208 ~-l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~  286 (527)
T PRK09275        208 E-LPRYDLEVVHINADEENEWQYPDSELEKLRDPSIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYG  286 (527)
T ss_pred             H-HcCCCeEEEEeecCcccCCCCCHHHHHhhcCCCCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCCh
Confidence            1 1334667676653       2678999988899999999999999999976   7889999965  499999999997


Q ss_pred             CCCCc--CCC--CCCccEEEeccccccccCCCceeeEEEeech
Q 024619          180 SPVLS--RPL--ELGADIVMHSATKFIAGHSDVMAGVLAVKGE  218 (265)
Q Consensus       180 ~~~~~--~~~--~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~  218 (265)
                      .-...  +..  ..+..+++.||||.+ +.+|+|.||++++++
T Consensus       287 ~f~~~~~s~~~~~~~~~I~v~SfSK~f-~mtG~RlG~i~~~~~  328 (527)
T PRK09275        287 TFVDDFRSLFAVLPYNTILVYSFSKYF-GATGWRLGVIALHED  328 (527)
T ss_pred             hhcccccCHHHhCCCCEEEEeehhhhc-cCcHhHHhhhhcCch
Confidence            43221  111  124679999999999 778999999998876

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=99.88  E-value=4.4e-21  Score=168.02  Aligned_cols=197  Identities=18%  Similarity=0.151  Sum_probs=149.6

Q ss_pred             hhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHh-cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-----
Q 024619           55 PTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~-~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----  127 (265)
                      +.++++++++++++|.+.++++++|++|+. ++..+ +++||+|++++++|+++...    +...|++++.++++     
T Consensus        31 ~~~~~~e~~la~~~g~~~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~----~~~~G~~~v~vd~d~~~~~  106 (376)
T TIGR02379        31 PFSRRCETWLENRTGTKKALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANA----FVLRGAKIVFVDIRPDTMN  106 (376)
T ss_pred             HHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHH----HHHcCCEEEEEecCCCcCC
Confidence            679999999999999998888888999986 55666 78999999999999888643    35679999998854     


Q ss_pred             -CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc--CCCCCCccEEEeccc--ccc
Q 024619          128 -DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS--RPLELGADIVMHSAT--KFI  202 (265)
Q Consensus       128 -d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~--~~~~~~~di~~~s~s--K~~  202 (265)
                       |++++++++.+++++|+   |+|++|...|+++|.++|+++|++||+|++|+.+...  .+...-.|+.++||+  |.+
T Consensus       107 ~d~~~le~~i~~~tk~Ii---p~~~~G~~~d~~~I~~la~~~~i~vIeDaa~~~g~~~~~~~~g~~~~~~~fSf~~~K~l  183 (376)
T TIGR02379       107 IDETLIESAITHRTKAIV---PVHYAGVACDMDTIMALANKHQLFVIEDAAQGVMSTYKGRALGSIGHLGTFSFHETKNY  183 (376)
T ss_pred             CCHHHHHHhcCcCceEEE---EeCCCCCccCHHHHHHHHHHCCCEEEEECccccCCccCCcccCCCCCEEEEeCCCCCcC
Confidence             78899999998999987   5567999999999999999999999999999987632  222222477777765  445


Q ss_pred             ccCCCceeeEEEeechhHHHHHHHHHHhcc---------------------CCCChhHHHHHHhccCchHhhHHHHhhc
Q 024619          203 AGHSDVMAGVLAVKGERLAKELYFLQNAEG---------------------SGLAPFDCWICLRGVKTMALRVEKQQVC  260 (265)
Q Consensus       203 ~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~  260 (265)
                      .  +|.++|+++.+++.+.+..+.++..+.                     ..++...++..+.+|+.+.....+.+++
T Consensus       184 ~--~g~~gG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aa~g~~qL~~l~~~~~~r~~~  260 (376)
T TIGR02379       184 T--SGGEGGALLINDQAFIERAEIIREKGTNRSQFFRGEVDKYTWRDIGSSYLPSELQAAYLWAQLEQADRINQDRLAT  260 (376)
T ss_pred             c--ccCCceEEEECCHHHHHHHHHHHHhCCCCccccccCCCcceeeeecccCCccHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            2  233479988887777776666554221                     1234556777778888775554444443

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=99.88  E-value=1.2e-21  Score=170.83  Aligned_cols=189  Identities=15%  Similarity=0.230  Sum_probs=131.3

Q ss_pred             CccCCCCChhHHHHHHHHHhHhCCC-ceEEecchH-HHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEee
Q 024619           47 YDYTRSGNPTRDALESLLAKLDKAD-RALCFTSGM-AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV  124 (265)
Q Consensus        47 ~~y~~~g~~~~~~l~~~l~~~~g~~-~~i~~~~g~-~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~  124 (265)
                      ..|+..+   ..++++.++++++.+ +.+++++|+ +++..+...+.+ +.|++++|+|+.+.    ..++..|.+++.+
T Consensus        49 ~~Y~~~~---~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~~~~-~~v~i~~P~y~~~~----~~~~~~g~~~~~~  120 (354)
T PRK06358         49 VEYPDPD---YLELRKRIASFEQLDLENVILGNGATELIFNIVKVTKP-KKVLILAPTFAEYE----RALKAFDAEIEYA  120 (354)
T ss_pred             hcCCCcc---HHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHhCC-CcEEEecCChHHHH----HHHHHcCCeeEEE
Confidence            3465433   356666677776666 566677776 888754444544 68999999999886    4456778888888


Q ss_pred             cCC-------CHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCcC--------C
Q 024619          125 NTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR--------P  186 (265)
Q Consensus       125 ~~~-------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~~--------~  186 (265)
                      +.+       | +++++.+.++++++++++|+||||.+.+   +++|+++|+++|+++|+||+|.......        .
T Consensus       121 ~~~~~~~~~~d-~~~~~~~~~~~~~v~~~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~  199 (354)
T PRK06358        121 ELTEETNFAAN-EIVLEEIKEEIDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYL  199 (354)
T ss_pred             eCccccCCCcc-HHHHHhhccCCCEEEEeCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhc
Confidence            753       3 4555566667999999999999999976   7889999999999999999996433211        1


Q ss_pred             CCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhcc
Q 024619          187 LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV  247 (265)
Q Consensus       187 ~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  247 (265)
                      ...+..+++.||||.+ |.+|+|+||+++++..+.+.+.....  ...++...+......+
T Consensus       200 ~~~~~vi~~~S~SK~~-gl~G~RiG~lv~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l  257 (354)
T PRK06358        200 ENFKNLIIIRAFTKFF-AIPGLRLGYGLTSNKNLAEKLLQMRE--PWSINTFADLAGQTLL  257 (354)
T ss_pred             cCCCCEEEEEechhhc-cCcchhheeeecCCHHHHHHHHHhCC--CCcchHHHHHHHHHHh
Confidence            1234679999999999 77889999998865554443333322  2344444444433333

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=99.88  E-value=7e-22  Score=171.01  Aligned_cols=221  Identities=21%  Similarity=0.204  Sum_probs=146.9

Q ss_pred             eccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHhcCCC
Q 024619           15 NFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTG   93 (265)
Q Consensus        15 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~~~~g   93 (265)
                      +|+ +++++|  ++|.+........  .  ....|.+  .+..+++++.+++++|.++.+++++|++++. ++..++++|
T Consensus         1 ~~~-~~~~~~--~~~~v~~a~~~~~--~--~~~~~~~--~~~~~~l~~~~a~~~g~~~~~~~~~gt~a~~~~~~~l~~~g   71 (338)
T cd06502           1 DFR-SDTVTG--PTPEMLEAMAAAN--V--GDDVYGE--DPTTAKLEARAAELFGKEAALFVPSGTAANQLALAAHTQPG   71 (338)
T ss_pred             Ccc-cccCCC--CCHHHHHHHHhcc--c--CCcccCC--CHHHHHHHHHHHHHhCCCeEEEecCchHHHHHHHHHhcCCC
Confidence            367 888888  4444444322111  1  1113322  3679999999999999667888888898885 667788999


Q ss_pred             CEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC----CCHHHHHhhcCC-------CceEEEEecCCCCccc--cccHHH
Q 024619           94 EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT----CDLDEVASAIGP-------WTKLVWVESPTNPRQQ--ICDIRK  160 (265)
Q Consensus        94 ~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~d~~~l~~~~~~-------~~~~i~~~~~~np~G~--~~~l~~  160 (265)
                      |.|++++|+|.+..... ..++..|++++.++.    .|++++++++.+       ++++|++++|+||+|.  ..++++
T Consensus        72 d~v~~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~g~~~~~~~l~~  150 (338)
T cd06502          72 GSVICHETAHIYTDEAG-APEFLSGVKLLPVPGENGKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEGGTVYPLDELKA  150 (338)
T ss_pred             CeEEEecCcceeeecCC-cHHHHcCceEEeecCCCCcCCHHHHHHHhhccCCCcCCcceEEEEEeecCCccccCHHHHHH
Confidence            99999999987653111 123447889888876    478999998864       6899999999998443  246789


Q ss_pred             HHHHHHHcCCEEEEeCCcCCCC---Cc---CCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhc--c
Q 024619          161 IAEMAHAHGALLLVDNSIMSPV---LS---RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE--G  232 (265)
Q Consensus       161 i~~~a~~~~~~li~D~~~~~~~---~~---~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~--~  232 (265)
                      |+++|+++|+++++||+|..+.   .+   .....+.|+++.|+||+++.++   +++++.+++ +.+.........  .
T Consensus       151 i~~~~~~~~~~livDea~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~---g~~~~~~~~-~~~~~~~~~~~~~~~  226 (338)
T cd06502         151 ISALAKENGLPLHLDGARLANAAAALGVALKTYKSGVDSVSFCLSKGGGAPV---GAVVVGNRD-FIARARRRRKQAGGG  226 (338)
T ss_pred             HHHHHHHcCCeEeechHHHHHHHHhcCCCHHHHHhcCCEEEEeccccCCCcc---ceEEECCHH-HHHHHHHHHHHhCCC
Confidence            9999999999999999874321   11   1112467899999999996543   345545544 444444333222  2


Q ss_pred             CCCChhHHHHHHhccCc
Q 024619          233 SGLAPFDCWICLRGVKT  249 (265)
Q Consensus       233 ~~~~~~~~~~~~~~l~~  249 (265)
                      ...++..++.....|+.
T Consensus       227 ~~~~~~~~~a~~~~L~~  243 (338)
T cd06502         227 MRQSGFLAAAGLAALEN  243 (338)
T ss_pred             hhhHHHHHHHHHHHhcC
Confidence            23344444555555543

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>PRK08354 putative aminotransferase; Provisional

Probab=99.88  E-value=2.7e-21  Score=165.67  Aligned_cols=150  Identities=19%  Similarity=0.275  Sum_probs=119.9

Q ss_pred             HHHHHHHHHhHhCCCceEEecchH-HHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhh
Q 024619           57 RDALESLLAKLDKADRALCFTSGM-AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASA  135 (265)
Q Consensus        57 ~~~l~~~l~~~~g~~~~i~~~~g~-~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~  135 (265)
                      ...+++.+++++|.  .+++++|+ +++..+..++.+||.|++++|+|+.+.    ..++..|.+++.++ .|++.+++.
T Consensus        42 ~~~l~~~ia~~~~~--~I~vt~G~~~al~~~~~~~~~gd~vlv~~P~y~~~~----~~~~~~g~~~~~~~-~d~~~l~~~  114 (311)
T PRK08354         42 YEWLEEEFSKLFGE--PIVITAGITEALYLIGILALRDRKVIIPRHTYGEYE----RVARFFAARIIKGP-NDPEKLEEL  114 (311)
T ss_pred             hHHHHHHHHHHHCC--CEEECCCHHHHHHHHHHhhCCCCeEEEeCCCcHHHH----HHHHHcCCEEeecC-CCHHHHHHh
Confidence            46678888888874  35566665 888755555568999999999999997    55677899998775 468888887


Q ss_pred             cCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEeccccccccCCCceee
Q 024619          136 IGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAG  211 (265)
Q Consensus       136 ~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~~~g~~g~~~G  211 (265)
                      +. +++++++++|+||||.+.+   +++|+++|+++|+++|+||+|...... .....+..+++.||||.+ +.+|+|.|
T Consensus       115 ~~-~~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~~~~~~vi~~~S~SK~~-~l~GlRiG  192 (311)
T PRK08354        115 VE-RNSVVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPESPEGENIIKLRTFTKSY-GLPGIRVG  192 (311)
T ss_pred             hc-CCCEEEEecCCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhccccccccCCCcEEEEeccHhhc-CCccceee
Confidence            76 5778999999999999975   678888999999999999999754432 122345789999999999 77899999


Q ss_pred             EEEe
Q 024619          212 VLAV  215 (265)
Q Consensus       212 ~v~~  215 (265)
                      |+++
T Consensus       193 ~~v~  196 (311)
T PRK08354        193 YVKG  196 (311)
T ss_pred             eeee
Confidence            9987

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=99.88  E-value=2.5e-21  Score=172.26  Aligned_cols=196  Identities=20%  Similarity=0.236  Sum_probs=134.6

Q ss_pred             CccCCC-CCh-hHHHHHHHHHhHhCCC---ceEEecchH-HHHH-HHHHhcC-----CCCEEEE-cCCCCCChHHHHHh-
Q 024619           47 YDYTRS-GNP-TRDALESLLAKLDKAD---RALCFTSGM-AALA-AVTHLLG-----TGEEIVA-GDDLYGGTDRLLSR-  112 (265)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~~~g~-~al~-~~~~~~~-----~g~~viv-~~~~~~~~~~~~~~-  112 (265)
                      ..|++. |.+ +++++++++.+.+|.+   +.|++++|+ +++. ++..+++     +||.|++ .+|+|+.+...... 
T Consensus        68 ~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~  147 (416)
T PRK09440         68 GNYDGPQGKDELIEALAALLNERYGWNISPQNIALTNGSQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEE  147 (416)
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccChHHHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhcc
Confidence            568877 875 6999999998887643   567777776 8886 5566664     5899999 79999998743211 


Q ss_pred             -hcCCCCeEEEeecC------CCHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCC
Q 024619          113 -VTPKTGVVVKRVNT------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPV  182 (265)
Q Consensus       113 -~~~~~g~~~~~~~~------~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~  182 (265)
                       .....+..+..++.      .|+++++  +.++++++++++|+||||.+++   +++|+++|+++|++||+||+|+...
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~  225 (416)
T PRK09440        148 DLFVSYRPNIELLPEGQFKYHVDFEHLH--IDEDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPF  225 (416)
T ss_pred             CceeecccccccccccccccCCCHHHcc--cCCCceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccC
Confidence             11222223322221      3677776  3567899999999999999976   6889999999999999999997422


Q ss_pred             Cc----C--CCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhcc
Q 024619          183 LS----R--PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV  247 (265)
Q Consensus       183 ~~----~--~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  247 (265)
                      ..    .  +...+..|+++||||+  +.+|+|+||++++++.+ +.+...........+...+..+.+.+
T Consensus       226 ~~~~~~~~~~~~~~~vI~~~SfSK~--~~pGlRiG~~i~~~~l~-~~~~~~~~~~~~~~s~~~q~~~~~~l  293 (416)
T PRK09440        226 PGIIFSEATPLWNPNIILCMSLSKL--GLPGVRCGIVIADEEII-EALSNMNGIISLAPGRLGPAIAAEMI  293 (416)
T ss_pred             CCcchhhcCccccCCeEEEeccccc--CCCcceEEEEeCCHHHH-HHHHHHHHHhccCCCcHHHHHHHHHh
Confidence            11    1  1113567999999994  67899999998876544 44444444433444544444443333

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=99.88  E-value=1.2e-21  Score=171.14  Aligned_cols=219  Identities=16%  Similarity=0.190  Sum_probs=143.6

Q ss_pred             eEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCC-ceEEecchH-HHHHHHHHh
Q 024619           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD-RALCFTSGM-AALAAVTHL   89 (265)
Q Consensus        12 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~-~~i~~~~g~-~al~~~~~~   89 (265)
                      .+++|+..-+.++  +++.+..+. ... ..  ....|++.+   ..++++.++++++.+ +.+++++|+ +++..+...
T Consensus        23 ~~i~l~~~~n~~~--~~~~~~~a~-~~~-~~--~~~~Y~~~~---~~~Lr~aia~~~~v~~~~I~it~G~~~~i~~~~~~   93 (360)
T PRK07392         23 AILDFSASINPLG--PPESVIAAI-QSA-LS--ALRHYPDPD---YRELRLALAQHHQLPPEWILPGNGAAELLTWAGRE   93 (360)
T ss_pred             cEEEeCCcCCCCC--CCHHHHHHH-HHH-HH--HhhcCCCcC---HHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHH
Confidence            5789983224444  333333322 111 11  134566543   235666666666665 567677776 888754444


Q ss_pred             cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC----------CHHHHHhhcCCCceEEEEecCCCCccccccHH
Q 024619           90 LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----------DLDEVASAIGPWTKLVWVESPTNPRQQICDIR  159 (265)
Q Consensus        90 ~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~  159 (265)
                      +.+||.|++++|+|+.+.    ..++..|.+++.++.+          +++++++.. ++++++++++||||||.+++.+
T Consensus        94 l~~g~~vlv~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~nP~NPTG~~~~~~  168 (360)
T PRK07392         94 LAQLRAVYLITPAFGDYR----RALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQL-TPNDGLLLNNPHNPTGKLWSRE  168 (360)
T ss_pred             hCCCCeEEEECCCcHHHH----HHHHHcCCeEEEEecccccCCcccccCHHHHHHhc-cCCCEEEEeCCCCCCCCCcCHH
Confidence            557899999999999987    5557789999888754          244454433 4688999999999999999999


Q ss_pred             HHHHHHHHcCCEEEEeCCcCCCCCc----C----CCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhc
Q 024619          160 KIAEMAHAHGALLLVDNSIMSPVLS----R----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE  231 (265)
Q Consensus       160 ~i~~~a~~~~~~li~D~~~~~~~~~----~----~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~  231 (265)
                      +|.++++++++ +|+||+|......    .    ....+..++++||||.+ +.+|+|+||++++.+.+.. +....  .
T Consensus       169 ~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~-~l~GlRiG~~v~~~~~~~~-~~~~~--~  243 (360)
T PRK07392        169 AILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFY-SLPGLRLGYAIAHPDRLQR-WQQWR--D  243 (360)
T ss_pred             HHHHHHHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhh-cCCchheeeeeCCHHHHHH-HHhhC--C
Confidence            99999999985 6669999743321    1    11224579999999999 7789999999987755433 22221  2


Q ss_pred             cCCCChhHHHHHHhccCc
Q 024619          232 GSGLAPFDCWICLRGVKT  249 (265)
Q Consensus       232 ~~~~~~~~~~~~~~~l~~  249 (265)
                      ....+...+..+...++.
T Consensus       244 ~~~~s~~~q~~~~~~l~~  261 (360)
T PRK07392        244 PWPVNGLAAAAAIAALAD  261 (360)
T ss_pred             CCCCCHHHHHHHHHHhcc
Confidence            244555555555444443

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=99.88  E-value=3.5e-22  Score=172.93  Aligned_cols=187  Identities=19%  Similarity=0.228  Sum_probs=130.0

Q ss_pred             CccCCCCChhHHHHHHHHHhHhCCC-ceEEecchH-HHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEee
Q 024619           47 YDYTRSGNPTRDALESLLAKLDKAD-RALCFTSGM-AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV  124 (265)
Q Consensus        47 ~~y~~~g~~~~~~l~~~l~~~~g~~-~~i~~~~g~-~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~  124 (265)
                      ..|+..|.   .++++.+++++|.+ +.+++++|+ +++..+...+ +||+|+++.|+|+.+.    ..++..|++++.+
T Consensus        50 ~~Y~~~g~---~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~-~gd~V~v~~P~y~~~~----~~~~~~g~~~~~v  121 (337)
T PRK03967         50 NRYPHITS---DPLREAIAEFYGLDAENIAVGNGSDELISYLVKLF-EGKHIVITPPTFGMYS----FYAKLNGIPVIDV  121 (337)
T ss_pred             ccCCCCCH---HHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHh-CCCeEEEeCCChHHHH----HHHHHcCCeEEEe
Confidence            45654344   44555555566655 566667765 8887554444 7999999999998765    4456788899888


Q ss_pred             cCC-----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcC----CCCCCccEEE
Q 024619          125 NTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR----PLELGADIVM  195 (265)
Q Consensus       125 ~~~-----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~----~~~~~~di~~  195 (265)
                      +.+     |++.+++.. ++++++++++|+||||.+.+.++|.++++ +++++|+||+|.......    ....+..+++
T Consensus       122 ~~~~~~~~d~~~l~~~~-~~~~~v~~~~P~NPtG~~~~~~~l~~i~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~l  199 (337)
T PRK03967        122 PLKEDFTIDGERIAEKA-KNASAVFICSPNNPTGNLQPEEEILKVLE-TGKPVVLDEAYAEFSGKSLIGLIDEYPNLILL  199 (337)
T ss_pred             ecCCCCCcCHHHHHHhc-cCCCEEEEeCCCCCCCCCCCHHHHHHHHh-cCCEEEEECchhhhcccchHHHHhhCCCEEEE
Confidence            753     567787754 57889999999999999999999999995 699999999997432111    1122457999


Q ss_pred             eccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhcc
Q 024619          196 HSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV  247 (265)
Q Consensus       196 ~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  247 (265)
                      .||||.+ +.+|+|+||++++++.+ +.+.....  ....+...+..+...+
T Consensus       200 ~S~SK~~-~l~GlRiG~iv~~~~~i-~~~~~~~~--~~~~~~~~q~~~~~~l  247 (337)
T PRK03967        200 RTFSKAF-GLAGIRAGYAIANEEII-DALYRIKP--PFSLNILTMKIVRLAL  247 (337)
T ss_pred             ecchHhh-cchhhhheeeecCHHHH-HHHHhhcC--CCCCCHHHHHHHHHHH
Confidence            9999999 67789999999876544 33333322  2344544444444333

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=99.88  E-value=9.6e-22  Score=174.26  Aligned_cols=162  Identities=27%  Similarity=0.337  Sum_probs=134.4

Q ss_pred             hHHHHHHHHHhHhCCC--ceEEecch-HHHHH-HHHHh----cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC
Q 024619           56 TRDALESLLAKLDKAD--RALCFTSG-MAALA-AVTHL----LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC  127 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~~i~~~~g-~~al~-~~~~~----~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  127 (265)
                      ..+++++.+++++|.+  +.+++++| ++++. ++..+    +++||+|+++++.|++....+...++..|++++.++.+
T Consensus        63 ~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~  142 (403)
T TIGR01979        63 AYEAVREKVAKFINAASDEEIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLD  142 (403)
T ss_pred             HHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecC
Confidence            4778889999999976  34555555 58876 44443    57899999999999987777767777889999988753


Q ss_pred             -----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEeccccc
Q 024619          128 -----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKF  201 (265)
Q Consensus       128 -----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~  201 (265)
                           |++++++++.+++++|++++++||||.+.|+++|+++|+++|+++++|++|+.+... +....+.|++++|++|+
T Consensus       143 ~~~~~~~~~l~~~i~~~~~lv~~~~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~  222 (403)
T TIGR01979       143 DDGTLDLDDLEKLLTEKTKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHMPVDVQALDCDFYVFSGHKM  222 (403)
T ss_pred             CCCCCCHHHHHHHhccCCeEEEEEcccccccccCCHHHHHHHHHHcCCEEEEEchhhcCccccCccccCCCEEEEecccc
Confidence                 789999999999999999999999999999999999999999999999999988764 33456799999999998


Q ss_pred             cccCCCceeeEEEeechhH
Q 024619          202 IAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       202 ~~g~~g~~~G~v~~~~~~~  220 (265)
                      + ||+|  .|+++.+++.+
T Consensus       223 ~-gp~G--~g~l~~~~~~~  238 (403)
T TIGR01979       223 Y-GPTG--IGVLYGKEELL  238 (403)
T ss_pred             c-CCCC--ceEEEEchHHH
Confidence            7 7887  58888876543

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=99.88  E-value=5.5e-21  Score=168.17  Aligned_cols=199  Identities=23%  Similarity=0.254  Sum_probs=151.8

Q ss_pred             hhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHh-cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-----
Q 024619           55 PTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~-~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----  127 (265)
                      +..+++++.+++++|.+..+++++|++|+. ++..+ +++||+|+++.++|.++.    ..++..|++++.++++     
T Consensus        29 ~~~~~le~~la~~~g~~~~v~~~sgt~al~~~l~al~~~~Gd~Viv~~~~~~~~~----~~~~~~G~~~~~~~~~~~~~~  104 (380)
T TIGR03588        29 PTVPAFEEALAEYVGAKYAVAFNSATSALHIACLALGVGPGDRVWTTPITFVATA----NCALYCGAKVDFVDIDPDTGN  104 (380)
T ss_pred             hhHHHHHHHHHHHHCCCeEEEEcCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHH----HHHHHcCCEEEEEecCCCcCC
Confidence            568899999999999998899999999986 56666 789999999999998886    4456789999998863     


Q ss_pred             -CHHHHHhhcC----CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCc----cEEEecc
Q 024619          128 -DLDEVASAIG----PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGA----DIVMHSA  198 (265)
Q Consensus       128 -d~~~l~~~~~----~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~----di~~~s~  198 (265)
                       |+++++++++    +++++|++.   |++|...|+++|.++|+++|++||+|++|+.|........+.    |+.++|+
T Consensus       105 ~d~~~l~~~i~~~~~~~t~~v~~~---~~~G~~~~~~~i~~l~~~~~~~lI~D~a~a~g~~~~~~~~g~~~~~d~~~~S~  181 (380)
T TIGR03588       105 IDEDALEKKLAAAKGKLPKAIVPV---DFAGKSVDMQAIAALAKKHGLKIIEDASHALGAEYGGKPVGNCRYADATVFSF  181 (380)
T ss_pred             cCHHHHHHHhhcccCCCceEEEEe---CCCCccCCHHHHHHHHHHcCCEEEEECCCcccCccCCEeCCCccccceEEEec
Confidence             7899999998    688988854   468999999999999999999999999999886432333334    9999998


Q ss_pred             c--cccccCCCceeeEEEeechhHHHHHHHHHHhc-------------------------cCCCChhHHHHHHhccCchH
Q 024619          199 T--KFIAGHSDVMAGVLAVKGERLAKELYFLQNAE-------------------------GSGLAPFDCWICLRGVKTMA  251 (265)
Q Consensus       199 s--K~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~l~~~~  251 (265)
                      +  |++..+.   +|+++..++.+.+..+..+...                         ...++...+++.+.+|+++.
T Consensus       182 ~~~K~~~~~~---GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~~l~  258 (380)
T TIGR03588       182 HPVKIITTAE---GGAVTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQLKKLD  258 (380)
T ss_pred             CCCCcccccC---ceEEEECCHHHHHHHHHHHHCCCCCCcccccccccCcceeeeeccccccCccHHHHHHHHHHHHHHH
Confidence            7  8886543   6888888777766555433211                         12334555666767777766


Q ss_pred             hhHHHHhhchhc
Q 024619          252 LRVEKQQVCFFD  263 (265)
Q Consensus       252 ~~~~~~~~~~~~  263 (265)
                      ...++.++++..
T Consensus       259 ~~~~~r~~~~~~  270 (380)
T TIGR03588       259 RFVAKRREIAAR  270 (380)
T ss_pred             HHHHHHHHHHHH
Confidence            665555555543

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=99.88  E-value=1.1e-21  Score=173.52  Aligned_cols=161  Identities=28%  Similarity=0.326  Sum_probs=131.8

Q ss_pred             hHHHHHHHHHhHhCCC-ceEEecch-HHHHH-HHHH---hcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC--
Q 024619           56 TRDALESLLAKLDKAD-RALCFTSG-MAALA-AVTH---LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--  127 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~-~~i~~~~g-~~al~-~~~~---~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--  127 (265)
                      ..+++++.+++++|.+ +.+++++| ++++. ++..   .+++||+|++.++.|++....+...++..|++++.++.+  
T Consensus        61 ~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~  140 (397)
T TIGR01976        61 VVDDAREAVADLLNADPPEVVFGANATSLTFLLSRAISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEA  140 (397)
T ss_pred             HHHHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHHHHHhcCCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEecccc
Confidence            4889999999999976 34555555 47764 3333   368999999999999888766666677889999888753  


Q ss_pred             ----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEecccccc
Q 024619          128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI  202 (265)
Q Consensus       128 ----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~~  202 (265)
                          |++++++++.+++++|++++|+||||.+.|+++|+++|+++|+++++|++|+.+... +..+.+.|++++|++||+
T Consensus       141 ~~~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~~  220 (397)
T TIGR01976       141 TGELHPDDLASLLSPRTRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVHYAPHGLIDVQATGADFLTCSAYKFF  220 (397)
T ss_pred             CCCcCHHHHHHhcCCCceEEEEeCCCCCCCccCCHHHHHHHHHHcCCEEEEehhhhccccCCCHHHcCCCEEEEechhhc
Confidence                689999999888999999999999999999999999999999999999999876543 333567899999999998


Q ss_pred             ccCCCceeeEEEeechhH
Q 024619          203 AGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       203 ~g~~g~~~G~v~~~~~~~  220 (265)
                       |++   .|+++++++.+
T Consensus       221 -g~~---~G~l~~~~~~~  234 (397)
T TIGR01976       221 -GPH---MGILWGRPELL  234 (397)
T ss_pred             -CCc---eEEEEEcHHHH
Confidence             553   69998877654

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=99.88  E-value=3.9e-22  Score=173.63  Aligned_cols=159  Identities=17%  Similarity=0.256  Sum_probs=125.1

Q ss_pred             hHHHHHHHHHhHhCCC-ceEEecchH-HHHH-HHHHhcCCC-CEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC----
Q 024619           56 TRDALESLLAKLDKAD-RALCFTSGM-AALA-AVTHLLGTG-EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~-~~i~~~~g~-~al~-~~~~~~~~g-~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----  127 (265)
                      ...++++.+++++|.+ +.+++++|+ +++. ++..++++| |.|+++.|+|+.+.    ..++..|++++.++.+    
T Consensus        58 ~~~~l~~~~a~~~g~~~~~I~~~~Gs~e~i~~~~~~~~~~g~~~vli~~P~y~~y~----~~~~~~G~~~~~v~~~~~~~  133 (351)
T PRK01688         58 QPKAVIENYAAYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYS----VSAETIGVEIRTVPTLDNWQ  133 (351)
T ss_pred             ChHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcCCCCCEEEEcCCCHHHHH----HHHHHcCCEEEEeecCCCCC
Confidence            4578889999999977 567777776 8886 667778887 89999999998885    5567789999888753    


Q ss_pred             -CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHc--CCEEEEeCCcCCCCCc-C----CCCCCccEEEeccc
Q 024619          128 -DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH--GALLLVDNSIMSPVLS-R----PLELGADIVMHSAT  199 (265)
Q Consensus       128 -d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~--~~~li~D~~~~~~~~~-~----~~~~~~di~~~s~s  199 (265)
                       |++++++++ +++++|++++|+||||.+.+.+++.++++..  ++++|+||+|...... .    ....+..+++.|||
T Consensus       134 ~d~~~l~~~~-~~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivDEay~~f~~~~s~~~~~~~~~n~iv~rSfS  212 (351)
T PRK01688        134 LDLPAIADNL-DGVKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLVILRTLS  212 (351)
T ss_pred             CCHHHHHHhc-cCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhcCCCCChHHHHhhCCCEEEEecch
Confidence             688898877 5899999999999999998766666655432  6899999999644321 1    11235679999999


Q ss_pred             cccccCCCceeeEEEeechhH
Q 024619          200 KFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       200 K~~~g~~g~~~G~v~~~~~~~  220 (265)
                      |++ |.+|+|.|+++++++.+
T Consensus       213 K~~-glaGlRiGy~i~~~~~i  232 (351)
T PRK01688        213 KAF-ALAGLRCGFTLANEEVI  232 (351)
T ss_pred             Hhh-cCHHHHHhHHhCCHHHH
Confidence            999 78899999998876554

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=99.87  E-value=1.1e-21  Score=169.61  Aligned_cols=158  Identities=16%  Similarity=0.267  Sum_probs=122.6

Q ss_pred             ChhHHHHHHHHHhHhCCC-ceEEecchH-HHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC----
Q 024619           54 NPTRDALESLLAKLDKAD-RALCFTSGM-AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (265)
Q Consensus        54 ~~~~~~l~~~l~~~~g~~-~~i~~~~g~-~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----  127 (265)
                      .+...++++.+++++|.+ +.+++++|+ +++..+..++++|+ |++.+|+|+.+.    ..++..|++++.++.+    
T Consensus        39 ~~~~~~lr~~ia~~~~~~~~~I~it~Gs~~~l~~~~~~~~~~~-vv~~~P~y~~y~----~~~~~~G~~v~~vp~~~~~~  113 (332)
T PRK06425         39 EISYTDIEDQIKIYTQGLKIKVLIGPGLTHFIYRLLSYINVGN-IIIVEPNFNEYK----GYAFTHGIRISALPFNLINN  113 (332)
T ss_pred             CcCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHhCCCc-EEEeCCChHHHH----HHHHHcCCeEEEEeCCcccC
Confidence            356888999999999877 567777776 88875545677765 666699999986    6667889999999875    


Q ss_pred             CHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc---C----CCCCCccEEEec
Q 024619          128 DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS---R----PLELGADIVMHS  197 (265)
Q Consensus       128 d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~---~----~~~~~~di~~~s  197 (265)
                      |.+.++   ..++++|++++|+||||.+.+   +++|+++|+++|++||+||+|......   .    ....+..++++|
T Consensus       114 ~~~~l~---~~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~~~vi~~~S  190 (332)
T PRK06425        114 NPEILN---NYNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRSYGNVIIGRS  190 (332)
T ss_pred             cHHHHh---hcCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccccccchhHHHHhccCCCEEEEee
Confidence            333333   247899999999999999976   678888999999999999999744321   1    112356899999


Q ss_pred             cccccccCCCceeeEEEeechhH
Q 024619          198 ATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       198 ~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                      |||.+ |.+|+|+||++++++.+
T Consensus       191 fSK~~-~l~GlRiGy~v~~~~li  212 (332)
T PRK06425        191 LTKIL-GIPSLRIGYIATDDYNM  212 (332)
T ss_pred             cHHhc-CCchhhheeeecCHHHH
Confidence            99999 77899999999877644

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=99.87  E-value=7.6e-22  Score=170.66  Aligned_cols=198  Identities=11%  Similarity=0.062  Sum_probs=128.4

Q ss_pred             cceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCCh-hHHHHHHHHHhHhCCCceEEecchH-HHHHHH
Q 024619            9 VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNP-TRDALESLLAKLDKADRALCFTSGM-AALAAV   86 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~-~~~~l~~~l~~~~g~~~~i~~~~g~-~al~~~   86 (265)
                      .+..+++|+ .++..-..++....+..  .. ........|.+.|.+ +++++++++.+..-.++.+++++|+ +++..+
T Consensus        17 ~~~~~i~l~-~~~~~~~~p~~~~~~~~--~~-~~~~~~~~Y~~~~~~~Lr~aia~~~~~~~~~~~~i~it~Ga~~~i~~~   92 (335)
T PRK14808         17 EKRDRTYLA-LNENPFPFPEDLVDEVF--RR-LNSDTLRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVM   92 (335)
T ss_pred             CCCceeEec-CCCCCCCCCHHHHHHHH--HH-hhhhhhhcCCCCChHHHHHHHHHHhCCCCCCcceEEEcCCHHHHHHHH
Confidence            335788998 44432222222333221  11 111112225544554 3555555554432123567677776 888754


Q ss_pred             HHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHH-HhhcCCCceEEEEecCCCCccccccHHHHHHHH
Q 024619           87 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEV-ASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA  165 (265)
Q Consensus        87 ~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l-~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a  165 (265)
                      ...+   |.|++++|+|+.+.    ..++..|.+++.++.++-..+ ...+ .+++++++++||||||.+.+.+++.+++
T Consensus        93 ~~~~---d~v~v~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~~~~-~~~~~i~i~nP~NPTG~~~s~~~l~~l~  164 (335)
T PRK14808         93 MLMF---DRSVFFPPTYSCYR----IFAKAVGAKFLEVPLTKDLRIPEVNV-GEGDVVFIPNPNNPTGHVFEREEIERIL  164 (335)
T ss_pred             HHHh---CcEEECCCCHHHHH----HHHHHcCCeEEEecCCCcCCCChhHc-cCCCEEEEeCCCCCCCCCcCHHHHHHHH
Confidence            4444   67999999999996    666788999999986521111 0112 3578999999999999999999999998


Q ss_pred             HHcCCEEEEeCCcCCCCCc---C-CCCCCccEEEeccccccccCCCceeeEEEeechhH
Q 024619          166 HAHGALLLVDNSIMSPVLS---R-PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       166 ~~~~~~li~D~~~~~~~~~---~-~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                       +++++||+||+|....-.   . ....+..+++.||||.+ +.+|+|+||++++++.+
T Consensus       165 -~~~~~ii~DE~Y~~f~~~~~~~~~~~~~~vi~~~S~SK~~-~l~GlRvG~~v~~~~~~  221 (335)
T PRK14808        165 -KTGAFVALDEAYYEFHGESYVDLLKKYENLAVIRTFSKAF-SLAAQRIGYVVSSEKFI  221 (335)
T ss_pred             -hcCCEEEEECchhhhcCCchHHHHHhCCCEEEEEechhhc-cCcccceEEEEeCHHHH
Confidence             579999999999743211   1 11234679999999999 67889999999877544

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=99.87  E-value=1e-21  Score=172.39  Aligned_cols=162  Identities=25%  Similarity=0.275  Sum_probs=134.0

Q ss_pred             hHHHHHHHHHhHhCCC---ceEEecchHHHHH-HHHHhcC---CCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-
Q 024619           56 TRDALESLLAKLDKAD---RALCFTSGMAALA-AVTHLLG---TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-  127 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~---~~i~~~~g~~al~-~~~~~~~---~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-  127 (265)
                      ..+++++.+++++|.+   ++++++++++++. ++.++..   +||+|++++++|++....+...++..|++++.++.+ 
T Consensus        44 ~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~  123 (373)
T cd06453          44 AYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLGRANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDD  123 (373)
T ss_pred             HHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhhhcCCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecCC
Confidence            3678889999999877   4555555568875 6667766   899999999999987655556667789999988754 


Q ss_pred             ----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcC-CCCCCccEEEecccccc
Q 024619          128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR-PLELGADIVMHSATKFI  202 (265)
Q Consensus       128 ----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~-~~~~~~di~~~s~sK~~  202 (265)
                          |++++++.+.+++++|++++++||||.+.|+++|.++|+++|+++++|++|+.+.... ....+.|++++|++|++
T Consensus       124 ~~~~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~  203 (373)
T cd06453         124 DGQLDLEALEKLLTERTKLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQSAGHMPVDVQDLGCDFLAFSGHKML  203 (373)
T ss_pred             CCCcCHHHHHHHhcCCceEEEEeCcccccCCcCCHHHHHHHHHHcCCEEEEEhhhhcCceeeeccccCCCEEEecccccc
Confidence                8999999998899999999999999999999999999999999999999998776642 33557899999999999


Q ss_pred             ccCCCceeeEEEeechhH
Q 024619          203 AGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       203 ~g~~g~~~G~v~~~~~~~  220 (265)
                      ++ +|  +|+++.+++.+
T Consensus       204 ~~-~g--~g~~~~~~~~~  218 (373)
T cd06453         204 GP-TG--IGVLYGKEELL  218 (373)
T ss_pred             CC-CC--cEEEEEchHHh
Confidence            65 55  58888877544

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=99.87  E-value=7.2e-21  Score=167.14  Aligned_cols=198  Identities=20%  Similarity=0.252  Sum_probs=148.2

Q ss_pred             ChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHh-cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC----
Q 024619           54 NPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (265)
Q Consensus        54 ~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~-~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----  127 (265)
                      .|...++++.+++++|.+.++++++|++|+. ++..+ +++||+|++++++|.++..    .+...|++++.++++    
T Consensus        32 g~~~~~le~~la~~~g~~~~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~~~----~~~~~G~~~v~vd~~~~~~  107 (379)
T PRK11658         32 GPKNQALEQAFCQLTGNQHAIAVSSATAGMHITLMALGIGPGDEVITPSLTWVSTLN----MIVLLGATPVMVDVDRDTL  107 (379)
T ss_pred             CHhHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHHHH----HHHHcCCEEEEEecCCCcC
Confidence            3679999999999999998999999999986 66677 7899999999999998863    345679999998753    


Q ss_pred             --CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcC---CCCCCccEEEecccccc
Q 024619          128 --DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR---PLELGADIVMHSATKFI  202 (265)
Q Consensus       128 --d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~---~~~~~~di~~~s~sK~~  202 (265)
                        |++++++++.+++++|+   |.|++|...|+++|.++|+++|+++|+|++|+.|....   ....+.+++.++.+|.+
T Consensus       108 ~~d~~~l~~~i~~~tkav~---~~~~~G~~~d~~~i~~~a~~~gi~vi~D~a~a~g~~~~~~~~g~~g~~~~Sf~~~K~l  184 (379)
T PRK11658        108 MVTPEAIEAAITPRTKAII---PVHYAGAPADLDAIRAIGERYGIPVIEDAAHAVGTYYKGRHIGARGTAIFSFHAIKNI  184 (379)
T ss_pred             CcCHHHHHHhcccCCeEEE---EeCCCCCcCCHHHHHHHHHHcCCeEEEECCCccCCeECCeecCCCCCEEEeCCCCCcC
Confidence              78999999998999988   55679999999999999999999999999999876532   22345566666666877


Q ss_pred             ccCCCceeeEEEeechhHHHHHHHHHHhc----------------------c--CCCChhHHHHHHhccCchHhhHHHHh
Q 024619          203 AGHSDVMAGVLAVKGERLAKELYFLQNAE----------------------G--SGLAPFDCWICLRGVKTMALRVEKQQ  258 (265)
Q Consensus       203 ~g~~g~~~G~v~~~~~~~~~~~~~~~~~~----------------------~--~~~~~~~~~~~~~~l~~~~~~~~~~~  258 (265)
                      .++   .+|+++.+++.+.+..+.....+                      +  ..++...+++.+.+++++....++.+
T Consensus       185 ~~g---~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~G~n~~~~~l~AAl~~~ql~~l~~~~~~r~  261 (379)
T PRK11658        185 TCA---EGGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQAEVLTPGYKYNLADINAAIALVQLAKLEALNARRR  261 (379)
T ss_pred             ccc---CceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCcceeeccccccCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            554   36888887666665554433211                      0  12344556666666766655444444


Q ss_pred             hch
Q 024619          259 VCF  261 (265)
Q Consensus       259 ~~~  261 (265)
                      +++
T Consensus       262 ~~a  264 (379)
T PRK11658        262 EIA  264 (379)
T ss_pred             HHH
Confidence            433

>PLN02409 serine--glyoxylate aminotransaminase

Probab=99.87  E-value=1.9e-21  Score=172.13  Aligned_cols=163  Identities=21%  Similarity=0.189  Sum_probs=135.9

Q ss_pred             hhHHHHHHHHHhHhCCC--c-eEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC---
Q 024619           55 PTRDALESLLAKLDKAD--R-ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~--~-~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---  127 (265)
                      ..++++++.+++++|.+  + +++.++|++++. ++..++++||+|++.++.|++..  |...++..|.+++.++.+   
T Consensus        42 ~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~~~~Gd~Vlv~~~~~~~~~--~~~~~~~~g~~v~~v~~~~~~  119 (401)
T PLN02409         42 ALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNTLSPGDKVVSFRIGQFSLL--WIDQMQRLNFDVDVVESPWGQ  119 (401)
T ss_pred             HHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhcCCCCCEEEEeCCCchhHH--HHHHHHHcCCceEEEECCCCC
Confidence            35899999999999876  3 455556678876 66778999999999998887653  446667789898888753   


Q ss_pred             --CHHHHHhhcCC----CceEEEEecCCCCccccccHHHHHHH--HHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEecc
Q 024619          128 --DLDEVASAIGP----WTKLVWVESPTNPRQQICDIRKIAEM--AHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSA  198 (265)
Q Consensus       128 --d~~~l~~~~~~----~~~~i~~~~~~np~G~~~~l~~i~~~--a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~  198 (265)
                        |++++++++++    ++++|++++++|+||.+.|+++|.++  |+++|+++++|++++.|... +..+++.|+++.|.
T Consensus       120 ~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g~~~id~~~~~~D~~~~s~  199 (401)
T PLN02409        120 GADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSIGALDFRMDEWGVDVALTGS  199 (401)
T ss_pred             CCCHHHHHHHHhhCcCCCccEEEEEeecccccccCCHHHHHHHHhhhccCcEEEEEcccccCCccccccccCccEEEEcC
Confidence              68999998875    78999999999999999999999999  99999999999999988765 33456899999999


Q ss_pred             ccccccCCCceeeEEEeechhHH
Q 024619          199 TKFIAGHSDVMAGVLAVKGERLA  221 (265)
Q Consensus       199 sK~~~g~~g~~~G~v~~~~~~~~  221 (265)
                      +||+++|+|  .|+++.+++.+.
T Consensus       200 ~K~l~~P~G--~G~l~~~~~~~~  220 (401)
T PLN02409        200 QKALSLPTG--LGIVCASPKALE  220 (401)
T ss_pred             ccccCcCCC--cceeEECHHHHH
Confidence            999999888  599988876543

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=99.87  E-value=4.2e-21  Score=171.24  Aligned_cols=162  Identities=27%  Similarity=0.306  Sum_probs=134.5

Q ss_pred             hHHHHHHHHHhHhCCC--ceEEecch-HHHHHH-HHH----hcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC
Q 024619           56 TRDALESLLAKLDKAD--RALCFTSG-MAALAA-VTH----LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC  127 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~~i~~~~g-~~al~~-~~~----~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  127 (265)
                      ..+++++.+++++|.+  +.+++++| ++++.. +..    .+++||+|++++++|++....|...++..|++++.++.+
T Consensus        77 ~~~~~r~~la~~~~~~~~~~v~~t~g~t~al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~  156 (424)
T PLN02855         77 AYELARKKVAAFINASTSREIVFTRNATEAINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLT  156 (424)
T ss_pred             HHHHHHHHHHHHcCCCCCCEEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecC
Confidence            4678899999999974  45555555 588864 433    368899999999999988777777778889999888753


Q ss_pred             -----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEeccccc
Q 024619          128 -----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKF  201 (265)
Q Consensus       128 -----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~  201 (265)
                           |++++++.+.+++++|++++++||||.+.|+++|+++|+++|+++++|++|+.|... +....+.|++++|++|+
T Consensus       157 ~~~~~~~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~  236 (424)
T PLN02855        157 PDEVLDVEQLKELLSEKTKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQSVPHMPVDVQTLGADFLVASSHKM  236 (424)
T ss_pred             CCCCcCHHHHHHHhccCceEEEEeCccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCcCCCchhcCCCEEEeecccc
Confidence                 789999999889999999999999999999999999999999999999999887664 33355789999999996


Q ss_pred             cccCCCceeeEEEeechhH
Q 024619          202 IAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       202 ~~g~~g~~~G~v~~~~~~~  220 (265)
                      + ||+|  .|+++.+++.+
T Consensus       237 ~-gp~G--~G~l~~~~~~~  252 (424)
T PLN02855        237 C-GPTG--IGFLWGKSDLL  252 (424)
T ss_pred             c-CCCc--cEEEEEchhhh
Confidence            5 7888  59998887554

>PRK02948 cysteine desulfurase; Provisional

Probab=99.87  E-value=1.7e-21  Score=171.41  Aligned_cols=160  Identities=19%  Similarity=0.215  Sum_probs=131.0

Q ss_pred             hHHHHHHHHHhHhCCC-ceEEecch-HHHHH-HHHHhc----CCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-
Q 024619           56 TRDALESLLAKLDKAD-RALCFTSG-MAALA-AVTHLL----GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-  127 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~-~~i~~~~g-~~al~-~~~~~~----~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-  127 (265)
                      ..+++++.+++++|.+ +.+++++| ++++. ++..++    ++|+.|+++...|+++...+. .++..|++++.++.+ 
T Consensus        44 ~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~~~~~~g~~vv~~~~~h~s~~~~~~-~~~~~g~~v~~v~~~~  122 (381)
T PRK02948         44 LLQVCRKTFAEMIGGEEQGIYFTSGGTESNYLAIQSLLNALPQNKKHIITTPMEHASIHSYFQ-SLESQGYTVTEIPVDK  122 (381)
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHhccCCCCEEEECCcccHHHHHHHH-HHHhCCCEEEEEeeCC
Confidence            4788999999999865 56666666 58875 455554    578999999999998877763 456789898888753 


Q ss_pred             ----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEecccccc
Q 024619          128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI  202 (265)
Q Consensus       128 ----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~~  202 (265)
                          |++++++.+.+++++|++++++||||.+.|+++|.++|+++|+++++|++++.|..+ +....+.|+++.|+||++
T Consensus       123 ~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~vivD~~~~~g~~~~~~~~~~~d~~~~s~~K~~  202 (381)
T PRK02948        123 SGLIRLVDLERAITPDTVLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQTFGKLPIDVFEMGIDSLSVSAHKIY  202 (381)
T ss_pred             CCCCCHHHHHHhcCCCCEEEEEECCcCCcEeehhHHHHHHHHHHcCCEEEEEChhhccccccCcccCCCCEEEecHHhcC
Confidence                789999999888999999999999999999999999999999999999999887654 234568999999999987


Q ss_pred             ccCCCceeeEEEeechh
Q 024619          203 AGHSDVMAGVLAVKGER  219 (265)
Q Consensus       203 ~g~~g~~~G~v~~~~~~  219 (265)
                       ||+|  .|+++.+++.
T Consensus       203 -gp~G--~G~l~~~~~~  216 (381)
T PRK02948        203 -GPKG--VGAVYINPQV  216 (381)
T ss_pred             -CCCc--EEEEEEcCCC
Confidence             6888  4887776653

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=99.87  E-value=2.7e-21  Score=168.82  Aligned_cols=199  Identities=20%  Similarity=0.254  Sum_probs=147.0

Q ss_pred             eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCC-hhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHH
Q 024619           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGN-PTRDALESLLAKLDKADRALCFTSGMAALA-AVTH   88 (265)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~-~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~   88 (265)
                      .++||-...-..+|.+.+|.-....+....    .  .|.  +. ..++++++++++++|.+++++++++++|+. ++.+
T Consensus         8 ~~~ina~g~~t~~g~s~~~~~v~~a~~~~~----~--~~~--~~~~~~~~~~~~~a~~~g~~~~~~~~g~t~al~~al~a   79 (363)
T TIGR01437         8 KKVINASGKMTILGVSTVSDEVADAQKRGA----Q--NYF--EIKELVNKTGEYIANLLGVEDAVIVSSASAGIAQSVAA   79 (363)
T ss_pred             ceEEECCcEeecCCCCCCCHHHHHHHHHHH----h--cCC--CHHHHHHHHHHHHHHhhCCCeEEEEcCHHHHHHHHHHH
Confidence            457776544455665544432222222111    0  122  22 459999999999999998888888889986 7788


Q ss_pred             hcCCCC---------------EEEEcCCCCCChHHHHHhhcCCCCeEEEeecC---CCHHHHHhhcCCCceEEE-EecCC
Q 024619           89 LLGTGE---------------EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT---CDLDEVASAIGPWTKLVW-VESPT  149 (265)
Q Consensus        89 ~~~~g~---------------~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~d~~~l~~~~~~~~~~i~-~~~~~  149 (265)
                      ++++||               +|+++.|.|..+...+...+...|+++++++.   .|++++++++++++++++ +++++
T Consensus        80 l~~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~~~~~d~~~le~ai~~~t~ai~~v~~~~  159 (363)
T TIGR01437        80 VITRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGYANECSAEQLEAAITEKTAAILYIKSHH  159 (363)
T ss_pred             HhcCCCcchhhcccccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcCCCCCCHHHHHHhcChhceEEEEEecCC
Confidence            898888               89998877765532223555778999998874   489999999999999766 68889


Q ss_pred             CCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHH
Q 024619          150 NPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA  221 (265)
Q Consensus       150 np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~  221 (265)
                      ||+|.+.|+++|.++|+++|+++++|++|+... ......+.|++++|+||++.||.   +|+++.+++.+.
T Consensus       160 ~~~g~~~~~~~i~~~a~~~gi~vivD~a~~~~~-~~~~~~g~D~~~~S~~K~l~gp~---~G~l~~~~~~i~  227 (363)
T TIGR01437       160 CVQKSMLSVEDAAQVAQEHNLPLIVDAAAEEDL-QKYYRLGADLVIYSGAKAIEGPT---SGLVLGKKKYIE  227 (363)
T ss_pred             CCcCCcCCHHHHHHHHHHcCCeEEEECCCCCch-HHHHHcCCCEEEEeCCcccCCCc---eEEEEEcHHHHH
Confidence            999999999999999999999999999998322 22234578999999999997764   688887665443

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]

Probab=99.87  E-value=1.6e-21  Score=166.94  Aligned_cols=194  Identities=21%  Similarity=0.203  Sum_probs=156.5

Q ss_pred             CCCCCCCCCCeeeccccccCCCCCCCCCc-cCCCCChhHHHHHHHHHhHhCCC-ceEEecch-HHHHH-HHHHh-cCCCC
Q 024619           20 FDPYGALSTPLYQTATFKQPSATENGPYD-YTRSGNPTRDALESLLAKLDKAD-RALCFTSG-MAALA-AVTHL-LGTGE   94 (265)
Q Consensus        20 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-y~~~g~~~~~~l~~~l~~~~g~~-~~i~~~~g-~~al~-~~~~~-~~~g~   94 (265)
                      +...++.++.++.+..-.......+++.. |...-.+..++.++.++++.|++ ..|+|++| +++++ ++..+ ...+|
T Consensus        49 ~~at~p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklInAd~~dIiFts~ATEs~Nlvl~~v~~~~~~  128 (428)
T KOG1549|consen   49 NQATGPMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLINADPSDIVFTSGATESNNLVLKGVARFFGD  128 (428)
T ss_pred             cCcCCCCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhCCCCCcEEEeCCchHHHHHHHHHhhccccc
Confidence            33567777777777653333345555555 55554456899999999999998 23666655 59887 45554 23345


Q ss_pred             ----EEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHH
Q 024619           95 ----EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA  165 (265)
Q Consensus        95 ----~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a  165 (265)
                          +|++...+|++....+ ...+..|.+++++|..     |.+.+++.++++|++|.+.+.+|.+|.+.|+++|+++|
T Consensus       129 ~~~k~iitl~~eH~~v~~s~-~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~Pv~EI~~ic  207 (428)
T KOG1549|consen  129 KTKKHIITLQTEHPCVLDSC-RALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQPVKEIVKIC  207 (428)
T ss_pred             cccceEEEecccCcchhHHH-HHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccCccccccHHHHHHHh
Confidence                8999999999998887 5567788999999865     79999999999999999999999999999999999999


Q ss_pred             HHcCCEEEEeCCcCCCCCc-CCCCCCccEEEeccccccccCCCceeeEEEeec
Q 024619          166 HAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKG  217 (265)
Q Consensus       166 ~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~  217 (265)
                      ++.++.+++|.+|+.|... +..+.++|++..|.|||+ ||+|  +|+++++.
T Consensus       208 r~~~v~v~~DaAQavG~i~vDV~eln~D~~s~s~HK~y-gp~~--iGaLYvr~  257 (428)
T KOG1549|consen  208 REEGVQVHVDAAQAVGKIPVDVQELNADFLSISAHKIY-GPPG--IGALYVRR  257 (428)
T ss_pred             CcCCcEEEeehhhhcCCccccHHHcCchheeeeccccc-CCCc--ceEEEEcc
Confidence            9999999999999999986 666889999999999999 6777  69998886

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=99.87  E-value=2.8e-21  Score=168.96  Aligned_cols=159  Identities=21%  Similarity=0.222  Sum_probs=121.7

Q ss_pred             HHHHHHHHHhHhCCC-ceEEecchH-HHHH-HHHHhcCCC-CEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-----
Q 024619           57 RDALESLLAKLDKAD-RALCFTSGM-AALA-AVTHLLGTG-EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (265)
Q Consensus        57 ~~~l~~~l~~~~g~~-~~i~~~~g~-~al~-~~~~~~~~g-~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----  127 (265)
                      ..++++.+++++|.+ +.+++++|+ +++. ++..++++| +.|++++|.|..+.    ..++..|.+++.+++.     
T Consensus        61 ~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~~~~g~~~vlv~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~  136 (364)
T PRK04781         61 PPGLRSALAALYGCAPEQLLIGRGSDEAIDLLVRALCVPGRDAVLVTPPVFGMYA----VCARLQNAPLVEVPLVDGADG  136 (364)
T ss_pred             HHHHHHHHHHHhCcChHHEEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHH----HHHHHcCCEEEEEecCCCccC
Confidence            467777788888876 467777775 8886 667778888 79999999987665    4456778999988752     


Q ss_pred             ---CHHHHHhhc-CCCceEEEEecCCCCccccccHHHHHHHHHH--cCCEEEEeCCcCCCCCc-C----CCCCCccEEEe
Q 024619          128 ---DLDEVASAI-GPWTKLVWVESPTNPRQQICDIRKIAEMAHA--HGALLLVDNSIMSPVLS-R----PLELGADIVMH  196 (265)
Q Consensus       128 ---d~~~l~~~~-~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~--~~~~li~D~~~~~~~~~-~----~~~~~~di~~~  196 (265)
                         |++++.+.+ .+++++|++++|+||||.+.+.+++.++++.  ++++||+||+|...... .    ....+..++++
T Consensus       137 ~~~d~~~l~~~~~~~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~f~~~~~~~~~~~~~~~vi~~~  216 (364)
T PRK04781        137 FHADVPAIVAAALASNAKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVDEAYGEFSDVPSAVGLLARYDNLAVLR  216 (364)
T ss_pred             CCcCHHHHHHHHhccCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcchhhcCCcchHHHHhhCCCEEEEe
Confidence               466765544 5789999999999999999998777777664  37899999999744321 1    12235679999


Q ss_pred             ccccccccCCCceeeEEEeechhH
Q 024619          197 SATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       197 s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                      ||||.+ |.+|+|.||++.+++.+
T Consensus       217 SfSK~~-gl~GlRvGy~v~~~~l~  239 (364)
T PRK04781        217 TLSKAH-ALAAARIGSLIANAELI  239 (364)
T ss_pred             cChhhc-ccccceeeeeeCCHHHH
Confidence            999999 77889999999876544

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=99.87  E-value=8.7e-22  Score=171.64  Aligned_cols=164  Identities=17%  Similarity=0.228  Sum_probs=125.8

Q ss_pred             CccCCCCChhHHHHHHHHHhHhCCC-ceEEecchH-HHHH-HHHHhcCCC-CEEEEcCCCCCChHHHHHhhcCCCCeEEE
Q 024619           47 YDYTRSGNPTRDALESLLAKLDKAD-RALCFTSGM-AALA-AVTHLLGTG-EEIVAGDDLYGGTDRLLSRVTPKTGVVVK  122 (265)
Q Consensus        47 ~~y~~~g~~~~~~l~~~l~~~~g~~-~~i~~~~g~-~al~-~~~~~~~~g-~~viv~~~~~~~~~~~~~~~~~~~g~~~~  122 (265)
                      ..|+..+   ..++++.+++++|.+ +.|++++|+ +++. ++..++++| |+|++++|+|+.+.    ..++..|++++
T Consensus        55 ~~Yp~~~---~~~Lr~aia~~~~~~~~~I~it~Gs~~~i~~~~~~~~~~g~d~vlv~~P~y~~y~----~~~~~~g~~v~  127 (354)
T PRK04635         55 NRYPECQ---PPELINAYSAYAGVAPEQILTSRGADEAIELLIRAFCEPGQDSIACFGPTYGMYA----ISAETFNVGVK  127 (354)
T ss_pred             ccCCCCC---HHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHH----HHHHHcCCEEE
Confidence            3455443   466777777888876 567777776 8886 666778888 89999999998875    44577899999


Q ss_pred             eecCC-----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHc-CCEEEEeCCcCCCCCc-C----CCCCCc
Q 024619          123 RVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH-GALLLVDNSIMSPVLS-R----PLELGA  191 (265)
Q Consensus       123 ~~~~~-----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~-~~~li~D~~~~~~~~~-~----~~~~~~  191 (265)
                      .++.+     |++.+++ + +++++|++++|+||||.+.+.+++.++++.. +++||+||+|...... .    ....+.
T Consensus       128 ~v~~~~~~~~~~~~l~~-~-~~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~~~~~~~s~~~~~~~~~~  205 (354)
T PRK04635        128 ALPLTADYQLPLDYIEQ-L-DGAKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIVVVDEAYIEFCPEYSVADLLASYPN  205 (354)
T ss_pred             EEecCCCCCCCHHHHHh-c-cCCCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEEEEeCchHhhccCcchHHHHhhCCC
Confidence            88764     5666753 3 6899999999999999999998888888764 6999999999643321 1    112245


Q ss_pred             cEEEeccccccccCCCceeeEEEeechhH
Q 024619          192 DIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       192 di~~~s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                      .+++.||||++ |.+|+|.|+++++++.+
T Consensus       206 ~iv~~S~SK~~-~l~GlRlG~~i~~~~~~  233 (354)
T PRK04635        206 LVVLRTLSKAF-ALAGARCGFTLANEELI  233 (354)
T ss_pred             EEEEechHHHh-hhhHHHHhhhhCCHHHH
Confidence            68999999999 77889999998876554

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=99.87  E-value=1e-20  Score=170.17  Aligned_cols=168  Identities=20%  Similarity=0.244  Sum_probs=123.5

Q ss_pred             ccCC-CCC-hhHHHHHH-HHHhHhC----CCc--eEEecchH-HHHH-HHHH-----hcCCCCEEEEcCCCCCChHHHHH
Q 024619           48 DYTR-SGN-PTRDALES-LLAKLDK----ADR--ALCFTSGM-AALA-AVTH-----LLGTGEEIVAGDDLYGGTDRLLS  111 (265)
Q Consensus        48 ~y~~-~g~-~~~~~l~~-~l~~~~g----~~~--~i~~~~g~-~al~-~~~~-----~~~~g~~viv~~~~~~~~~~~~~  111 (265)
                      .|+. .|. +.++++.. ++.+.++    .++  .+++++|+ +|+. ++.+     +++|||+|++.+|.|+.|.....
T Consensus       123 ~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~  202 (521)
T TIGR03801       123 NYPVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPE  202 (521)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHH
Confidence            4754 355 45777664 5555432    122  56666655 8885 5554     68999999999999999974431


Q ss_pred             hhcCCCCeEEEeecCC------------CHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHc--CCEEEE
Q 024619          112 RVTPKTGVVVKRVNTC------------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAH--GALLLV  174 (265)
Q Consensus       112 ~~~~~~g~~~~~~~~~------------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~--~~~li~  174 (265)
                        ....|.+++.++.+            |.+++++++.+++++|++++|+||||.+.+   +++|+++|++|  +++||+
T Consensus       203 --l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~~~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~  280 (521)
T TIGR03801       203 --LPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRDPSIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILT  280 (521)
T ss_pred             --HhcCCcEEEEeecccccccccccCCCCHHHHHHhcCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEE
Confidence              23346777766532            568898888889999999999999999976   78889999987  999999


Q ss_pred             eCCcCCCCCc--CCC--CCCccEEEeccccccccCCCceeeEEEeech
Q 024619          175 DNSIMSPVLS--RPL--ELGADIVMHSATKFIAGHSDVMAGVLAVKGE  218 (265)
Q Consensus       175 D~~~~~~~~~--~~~--~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~  218 (265)
                      ||+|+.-...  +..  ..+..+++.|+||.+ |.+|+|.|+++.+++
T Consensus       281 DEvY~~f~~~~~sl~~~~~~~vI~v~SfSK~f-g~~G~RlG~i~~~~~  327 (521)
T TIGR03801       281 DDVYGTFVDDFRSLFAELPYNTIGVYSFSKYF-GATGWRLGTIALHKD  327 (521)
T ss_pred             CCCchhhcccccchhhhCCCCEEEEEcchhhc-cCchhhhhhhhcCch
Confidence            9999743221  111  124679999999999 778999999998865

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>cd00609 AAT_like Aspartate aminotransferase family

Probab=99.87  E-value=2e-20  Score=162.06  Aligned_cols=192  Identities=25%  Similarity=0.329  Sum_probs=139.1

Q ss_pred             CCccCCC-CCh-hHHHHHHHHHhHhC----CCceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC
Q 024619           46 PYDYTRS-GNP-TRDALESLLAKLDK----ADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (265)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g----~~~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g  118 (265)
                      .+.|... |.. .++.+++.+...++    .++.+++++|++++. ++..+.++||+|++++++|+++..    .++..|
T Consensus        29 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~g~~vl~~~~~~~~~~~----~~~~~~  104 (350)
T cd00609          29 LLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALLNPGDEVLVPDPTYPGYEA----AARLAG  104 (350)
T ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhCCCCCEEEEcCCCchhHHH----HHHHCC
Confidence            3445555 554 47777888777765    445666666778886 667778889999999999999874    446677


Q ss_pred             eEEEeecCC-----CH--HHHHhhcCCCceEEEEecCCCCccccccH---HHHHHHHHHcCCEEEEeCCcCCCCCc----
Q 024619          119 VVVKRVNTC-----DL--DEVASAIGPWTKLVWVESPTNPRQQICDI---RKIAEMAHAHGALLLVDNSIMSPVLS----  184 (265)
Q Consensus       119 ~~~~~~~~~-----d~--~~l~~~~~~~~~~i~~~~~~np~G~~~~l---~~i~~~a~~~~~~li~D~~~~~~~~~----  184 (265)
                      .+++.++..     +.  +.++....+++++|++++++||+|.+.|+   ++|+++|+++|+++|+|++|+.+...    
T Consensus       105 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~  184 (350)
T cd00609         105 AEVVPVPLDEEGGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPP  184 (350)
T ss_pred             CEEEEEecccccCCccCHHHHHhhcCccceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCccc
Confidence            888888754     12  56666667889999999999999999875   45568999999999999999765432    


Q ss_pred             ----CCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHH
Q 024619          185 ----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI  242 (265)
Q Consensus       185 ----~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (265)
                          .....+.|++++|++|++ +.+|.+.|++++++..+.+.+...........+......
T Consensus       185 ~~~~~~~~~~~~~~~~s~~K~~-~~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (350)
T cd00609         185 PALALLDAYERVIVLRSFSKTF-GLPGLRIGYLIAPPEELLERLKKLLPYTTSGPSTLSQAA  245 (350)
T ss_pred             ccccCcCccCcEEEEeeccccc-CCcccceEEEecCHHHHHHHHHHHHHhcccCCChHHHHH
Confidence                123446789999999999 455678899998885555555555444434444444433

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>PLN02672 methionine S-methyltransferase

Probab=99.86  E-value=6.2e-21  Score=181.82  Aligned_cols=204  Identities=13%  Similarity=0.132  Sum_probs=146.7

Q ss_pred             ceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCCh-hHHHHHHHHHhHhCCC----ceEEecchH-HHH
Q 024619           10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNP-TRDALESLLAKLDKAD----RALCFTSGM-AAL   83 (265)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~-~~~~l~~~l~~~~g~~----~~i~~~~g~-~al   83 (265)
                      +..+|+++ .++..-+.++.+.++.. ....   ..  .+ ..|.+ .++++++++++.+|.+    +.+++++|+ +++
T Consensus       696 g~~vI~Ls-inE~d~ppPp~V~eAi~-eal~---~~--~~-s~g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL  767 (1082)
T PLN02672        696 ESSLIHMD-VDESFLPVPSAVKASIF-ESFV---RQ--NI-SESETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLALF  767 (1082)
T ss_pred             CCCEEEEe-CCCCCCCCCHHHHHHHH-HHHh---hc--CC-CCCChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHH
Confidence            35688888 55543333333333321 1110   11  11 12444 4899999999998765    368888887 667


Q ss_pred             H-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-------CHHHHHhhcCC-CceEEEEecCC-CCcc
Q 024619           84 A-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGP-WTKLVWVESPT-NPRQ  153 (265)
Q Consensus        84 ~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~~~~-~~~~i~~~~~~-np~G  153 (265)
                      . ++..++++||.|+++.|+|+.+.    ..++..|.+++.++++       |++++++++.+ +.+.|++++|+ ||||
T Consensus       768 ~lll~aLl~pGD~VLVp~PtY~~Y~----~~a~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~~~~~I~L~nPnhNPTG  843 (1082)
T PLN02672        768 NKLVLCCVQEGGTLCFPAGSNGTYV----SAAKFLKANFRRIPTKSSDGFKLTAKTLASTLETVKKPWVYISGPTINPTG  843 (1082)
T ss_pred             HHHHHHHcCCCCEEEEeCCChHHHH----HHHHHcCCEEEEEecccccCCCCCHHHHHHHhccCCCCEEEEECcCCCCcC
Confidence            5 67888999999999999999997    5567789999998863       57889988865 45689999997 9999


Q ss_pred             cccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc-CC---------C-C------CCccEEEeccccccccCCCceeeEE
Q 024619          154 QICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-RP---------L-E------LGADIVMHSATKFIAGHSDVMAGVL  213 (265)
Q Consensus       154 ~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~-~~---------~-~------~~~di~~~s~sK~~~g~~g~~~G~v  213 (265)
                      .+.+   +++|+++|++||++||+||+|+.-.+. ..         . .      ....++++||||.+ +.+|+|+||+
T Consensus       844 ~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf-~lpGLRIGyl  922 (1082)
T PLN02672        844 LLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTEL-LSGGHEFGFL  922 (1082)
T ss_pred             ccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhh-ccHHHHheeE
Confidence            9965   788999999999999999999733221 00         0 0      12468999999999 6789999999


Q ss_pred             EeechhHHHHHHH
Q 024619          214 AVKGERLAKELYF  226 (265)
Q Consensus       214 ~~~~~~~~~~~~~  226 (265)
                      ++++..+.+.+..
T Consensus       923 Iap~~eLi~~l~~  935 (1082)
T PLN02672        923 ALNDSVLIDAFHS  935 (1082)
T ss_pred             EeCCHHHHHHHHH
Confidence            9877645454443

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=99.86  E-value=5.8e-21  Score=166.89  Aligned_cols=200  Identities=23%  Similarity=0.256  Sum_probs=152.6

Q ss_pred             ChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHh-cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC----
Q 024619           54 NPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (265)
Q Consensus        54 ~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~-~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----  127 (265)
                      .+..+++++.+++++|.+.++.++||+.|+. ++.++ +++||+|+++..+++++.    ......|++++++|++    
T Consensus        24 g~~~~~fE~~~a~~~g~~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~----~ai~~~G~~pv~~Di~~~~~   99 (363)
T PF01041_consen   24 GPYVEEFEKEFAEYFGVKYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATA----SAILWAGAEPVFVDIDPETL   99 (363)
T ss_dssp             SHHHHHHHHHHHHHHTSSEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHH----HHHHHTT-EEEEE-BETTTS
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHH----HHHHHhccEEEEEeccCCcC
Confidence            4789999999999999999999999999997 45555 679999999999999887    4456789999999965    


Q ss_pred             --CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcC--CCCCCccEEEecc--ccc
Q 024619          128 --DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR--PLELGADIVMHSA--TKF  201 (265)
Q Consensus       128 --d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~--~~~~~~di~~~s~--sK~  201 (265)
                        |++++++++.+++++|++.+.   -|...|+++|.++|+++|++||+|.+|+.|....  ....-.|+.++||  +|.
T Consensus       100 ~id~~~~~~~i~~~t~ai~~~h~---~G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~~~~g~~~G~~gd~~~fSf~~~K~  176 (363)
T PF01041_consen  100 NIDPEALEKAITPKTKAILVVHL---FGNPADMDAIRAIARKHGIPLIEDAAQAFGARYKGRPVGSFGDIAIFSFHPTKI  176 (363)
T ss_dssp             SB-HHHHHHHHHTTEEEEEEE-G---GGB---HHHHHHHHHHTT-EEEEE-TTTTT-EETTEETTSSSSEEEEESSTTSS
T ss_pred             CcCHHHHHHHhccCccEEEEecC---CCCcccHHHHHHHHHHcCCcEEEccccccCceeCCEeccCCCCceEecCCCCCC
Confidence              899999999999999997655   7888899999999999999999999999987532  2333459999997  588


Q ss_pred             cccCCCceeeEEEeechhHHHHHHHHHHhc-----------------cCCCChhHHHHHHhccCchHhhHHHHhhchhc
Q 024619          202 IAGHSDVMAGVLAVKGERLAKELYFLQNAE-----------------GSGLAPFDCWICLRGVKTMALRVEKQQVCFFD  263 (265)
Q Consensus       202 ~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  263 (265)
                      +....   +|+++++++.+.+....+...+                 ...++...+++.+.+|+++....++.++++..
T Consensus       177 i~~ge---GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm~~~~AAigl~QL~~L~~~~~~R~~~a~~  252 (363)
T PF01041_consen  177 ITTGE---GGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGYNFRMSELQAAIGLAQLKRLDEIIARRRENAQR  252 (363)
T ss_dssp             S-SSS----EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B-B-BHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             CcCCC---CeeEEecHHHHHHHhhhhhccCcCccccccccccccCCcccccHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            85443   6999999988877776655322                 13466788889999999998877777776653

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=99.86  E-value=9.4e-21  Score=165.21  Aligned_cols=163  Identities=22%  Similarity=0.243  Sum_probs=132.6

Q ss_pred             hhHHHHHHHHHhHhCCC--c-eEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC---
Q 024619           55 PTRDALESLLAKLDKAD--R-ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~--~-~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---  127 (265)
                      ...+++++.+++++|.+  + .+++++|++++. ++..++++||+|++..++|.+..  +...++..|.+++.++.+   
T Consensus        32 ~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~~~~g~~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~  109 (356)
T cd06451          32 ALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLLEPGDKVLVGVNGVFGDR--WADMAERYGADVDVVEKPWGE  109 (356)
T ss_pred             HHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHhCCCCCEEEEecCCchhHH--HHHHHHHhCCCeEEeecCCCC
Confidence            45889999999999984  3 445556688886 66778899999999988776532  224556778888888643   


Q ss_pred             --CHHHHHhhcCC-CceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEeccccccc
Q 024619          128 --DLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIA  203 (265)
Q Consensus       128 --d~~~l~~~~~~-~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~~~  203 (265)
                        |++++++.+++ ++++|++++++||+|.+.|+++|.++|+++|+++++|++|+.|... +....+.|+++.|++||++
T Consensus       110 ~~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~~~~i~~~a~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~l~  189 (356)
T cd06451         110 AVSPEEIAEALEQHDIKAVTLTHNETSTGVLNPLEGIGALAKKHDALLIVDAVSSLGGEPFRMDEWGVDVAYTGSQKALG  189 (356)
T ss_pred             CCCHHHHHHHHhccCCCEEEEeccCCCcccccCHHHHHHHHHhcCCEEEEeeehhccCccccccccCccEEEecCchhcc
Confidence              78999999986 8999999999999999999999999999999999999999877643 3335578999999999998


Q ss_pred             cCCCceeeEEEeechhHH
Q 024619          204 GHSDVMAGVLAVKGERLA  221 (265)
Q Consensus       204 g~~g~~~G~v~~~~~~~~  221 (265)
                      +|+|  +|+++.+++.+.
T Consensus       190 ~p~g--~G~l~~~~~~~~  205 (356)
T cd06451         190 APPG--LGPIAFSERALE  205 (356)
T ss_pred             CCCC--cceeEECHHHHH
Confidence            8877  599988876543

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=99.86  E-value=5.8e-20  Score=161.31  Aligned_cols=196  Identities=16%  Similarity=0.120  Sum_probs=146.3

Q ss_pred             hhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHh-cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-----
Q 024619           55 PTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~-~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----  127 (265)
                      +.++++++++++++|.+.++++++|++|+. ++..+ +++||+|+++.++|+++.    ..+...|++++.++.+     
T Consensus        31 ~~~~~~e~~la~~~g~~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~----~~~~~~G~~~v~~d~d~~~~~  106 (375)
T PRK11706         31 GFTRRCQQWLEQRFGSAKVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTA----NAFVLRGAKIVFVDIRPDTMN  106 (375)
T ss_pred             HHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHH----HHHHHcCCEEEEEecCCCcCC
Confidence            568999999999999998999999999986 44544 789999999999999887    4446679999998753     


Q ss_pred             -CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc--CCCCCCccEEEeccc--ccc
Q 024619          128 -DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS--RPLELGADIVMHSAT--KFI  202 (265)
Q Consensus       128 -d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~--~~~~~~~di~~~s~s--K~~  202 (265)
                       |++++++++.+++++|+++   |++|...++++|.++|+++|++||+|++|+.+...  .+.....|+.++||+  |.+
T Consensus       107 ~d~~~le~~i~~~tk~i~~~---~~~G~~~~~~~i~~la~~~~i~vIeD~a~a~g~~~~~~~~g~~~~~~~~Sf~~~K~l  183 (375)
T PRK11706        107 IDETLIEAAITPKTRAIVPV---HYAGVACEMDTIMALAKKHNLFVVEDAAQGVMSTYKGRALGTIGHIGCFSFHETKNY  183 (375)
T ss_pred             cCHHHHHHhcCCCCeEEEEe---CCCCCccCHHHHHHHHHHcCCEEEEECccccccccCCeeeecCcCEEEEeCCCCccc
Confidence             7899999998899999876   46899999999999999999999999999988642  222333578888877  998


Q ss_pred             ccCCCceeeEEEeechhHHHHHHHHHHh---------------------ccCCCChhHHHHHHhccCchHhhHHHHhhc
Q 024619          203 AGHSDVMAGVLAVKGERLAKELYFLQNA---------------------EGSGLAPFDCWICLRGVKTMALRVEKQQVC  260 (265)
Q Consensus       203 ~g~~g~~~G~v~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  260 (265)
                      ..  |. +|+++..++.+.+....++..                     ....++...++..+.+++.+....++.+++
T Consensus       184 ~~--g~-gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~ql~~l~~~~~~R~~~  259 (375)
T PRK11706        184 TA--GE-GGALLINDPALIERAEIIREKGTNRSQFFRGQVDKYTWVDIGSSYLPSELQAAYLWAQLEAADRINQRRLAL  259 (375)
T ss_pred             cc--cC-CeEEEECCHHHHHHHHHHHHcCCCcchhhccCCCcceeeecccccCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43  33 465556666666555444421                     111234556677777777765444444443

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.86  E-value=4.3e-20  Score=158.58  Aligned_cols=197  Identities=24%  Similarity=0.241  Sum_probs=158.7

Q ss_pred             hhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHh-cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-----
Q 024619           55 PTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~-~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----  127 (265)
                      +..+++++.+++++|+..++.++||+.|+. +++++ +.|||+||++..+|..+.    ......|++++++|++     
T Consensus        34 ~~v~~FE~~~ae~~G~k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATa----n~i~~~Ga~PVFvDid~~T~n  109 (374)
T COG0399          34 PFVRRFEQAFAEYLGVKYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATA----NAVLLVGAKPVFVDIDPDTLN  109 (374)
T ss_pred             hHHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHH----HHHHHcCCeEEEEecCCcccC
Confidence            678999999999999999999999999997 45544 899999999999998886    4446689999999976     


Q ss_pred             -CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCC--CccEEEecc--cccc
Q 024619          128 -DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLEL--GADIVMHSA--TKFI  202 (265)
Q Consensus       128 -d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~--~~di~~~s~--sK~~  202 (265)
                       |++.+++++++++|+|+..+.   -|...|+++|.++|++||++||+|.+|+.|..-.....  --|+.++||  +|.+
T Consensus       110 id~~~ie~aIt~~tKAIipVhl---~G~~~dm~~i~~la~~~~l~vIEDaAqa~Ga~y~gk~vGt~Gd~~~fSF~~~K~i  186 (374)
T COG0399         110 IDPDLIEAAITPRTKAIIPVHL---AGQPCDMDAIMALAKRHGLPVIEDAAQAHGATYKGKKVGSFGDIGAFSFHATKNL  186 (374)
T ss_pred             CCHHHHHHHcccCCeEEEEehh---ccCCCCHHHHHHHHHHcCCeEEEEcchhccCeecCcccccccceEEEEecCCCCc
Confidence             899999999999999996554   78889999999999999999999999999886433322  247888885  6877


Q ss_pred             ccCCCceeeEEEeechhHHHHHHHHHHhcc----------------CCCChhHHHHHHhccCchHhhHHHHhhch
Q 024619          203 AGHSDVMAGVLAVKGERLAKELYFLQNAEG----------------SGLAPFDCWICLRGVKTMALRVEKQQVCF  261 (265)
Q Consensus       203 ~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  261 (265)
                      ...   -||+++.+++.+.+..+.+...+.                ..++..++++.+.+|+++.....+.++++
T Consensus       187 ttg---EGGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~~G~N~rm~~iqAAigl~QL~~l~~~~~~R~~~a  258 (374)
T COG0399         187 TTG---EGGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHEELGYNYRLTEIQAAIGLAQLERLDEINERRREIA  258 (374)
T ss_pred             ccc---CceEEEeCCHHHHHHHHHHHHhCcCCCccccceeeecccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            543   379999999998887776665333                23445677888888888765555555444

>PLN02651 cysteine desulfurase

Probab=99.86  E-value=2.2e-20  Score=163.45  Aligned_cols=161  Identities=22%  Similarity=0.240  Sum_probs=132.0

Q ss_pred             hHHHHHHHHHhHhCCC-ceEEe-cchHHHHH-HHHH----hcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-
Q 024619           56 TRDALESLLAKLDKAD-RALCF-TSGMAALA-AVTH----LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-  127 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~-~~i~~-~~g~~al~-~~~~----~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-  127 (265)
                      ..+++++.+++++|++ +.+++ +++++++. ++..    +.++||+|++.+..|+++...+... +..|++++.++.+ 
T Consensus        44 ~~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~~l~~~~~~~~~~g~~vl~~~~~h~s~~~~~~~~-~~~g~~v~~v~~~~  122 (364)
T PLN02651         44 AVEKARAQVAALIGADPKEIIFTSGATESNNLAIKGVMHFYKDKKKHVITTQTEHKCVLDSCRHL-QQEGFEVTYLPVKS  122 (364)
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhccCCCCEEEEcccccHHHHHHHHHH-HhcCCEEEEEccCC
Confidence            4778899999999986 44444 45568764 3333    3578999999999999887776444 4678888888753 


Q ss_pred             ----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEecccccc
Q 024619          128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI  202 (265)
Q Consensus       128 ----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~~  202 (265)
                          |+++++++++++++++++++++|+||.+.|+++|.++|+++|+++++|++|+.|..+ +....+.|+++.|.+|| 
T Consensus       123 ~~~~d~~~l~~~i~~~t~lv~v~~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~a~~~g~~~~~~~~~~~D~~~~s~hK~-  201 (364)
T PLN02651        123 DGLVDLDELAAAIRPDTALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQAVGKIPVDVDDLGVDLMSISGHKI-  201 (364)
T ss_pred             CCcCCHHHHHHhcCCCcEEEEEECCCCCceecccHHHHHHHHHHcCCEEEEEcchhhCCcccCcccCCCCEEEechhhh-
Confidence                789999999999999999999999999999999999999999999999999998765 45567899999999998 


Q ss_pred             ccCCCceeeEEEeechhH
Q 024619          203 AGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       203 ~g~~g~~~G~v~~~~~~~  220 (265)
                      +||+|  .|+++.+++..
T Consensus       202 ~gp~G--~g~l~v~~~~~  217 (364)
T PLN02651        202 YGPKG--VGALYVRRRPR  217 (364)
T ss_pred             CCCCc--eEEEEEcCCCC
Confidence            58888  48888887543

>PRK08637 hypothetical protein; Provisional

Probab=99.86  E-value=4.6e-20  Score=162.73  Aligned_cols=169  Identities=15%  Similarity=0.201  Sum_probs=123.3

Q ss_pred             CCCCccCCC-CCh-hHHHHHHHHHhHhC---CC--ceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhc
Q 024619           44 NGPYDYTRS-GNP-TRDALESLLAKLDK---AD--RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVT  114 (265)
Q Consensus        44 ~~~~~y~~~-g~~-~~~~l~~~l~~~~g---~~--~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~  114 (265)
                      ...+.|++. |.+ +++.+.+++.+..+   .+  +.+++++|+ +++. ++..++++||.|++++|+|+.+...+   .
T Consensus        35 ~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~---~  111 (388)
T PRK08637         35 DEIFPYAPPQGIPELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLFVDQGDTVLLPDHNWGNYKLTF---N  111 (388)
T ss_pred             ccccCCCCCCCCHHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHH---H
Confidence            355788887 876 58888888876532   22  346677775 8886 66777899999999999999997322   2


Q ss_pred             CCCCeEEEeecC--C----CHHHHHhhcC----CCceEEEEecCCCCcccccc---HHHHHHHHHH-----cCCEEEEeC
Q 024619          115 PKTGVVVKRVNT--C----DLDEVASAIG----PWTKLVWVESPTNPRQQICD---IRKIAEMAHA-----HGALLLVDN  176 (265)
Q Consensus       115 ~~~g~~~~~~~~--~----d~~~l~~~~~----~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~-----~~~~li~D~  176 (265)
                      ...|.+++.+++  +    |++++++.++    +...++++++||||||.+.+   +++|+++|++     ++++||+||
T Consensus       112 ~~~g~~vv~v~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De  191 (388)
T PRK08637        112 TRRGAEIVTYPIFDEDGGFDTDALKEALQAAYNKGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDD  191 (388)
T ss_pred             HhcCCEEEEecccCCCCcCCHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecc
Confidence            346888888876  2    6888888765    45567788999999999975   6778887775     899999999


Q ss_pred             CcCCCCCc-----C---C--CCCCcc--EEEeccccccccCCCceeeEEEee
Q 024619          177 SIMSPVLS-----R---P--LELGAD--IVMHSATKFIAGHSDVMAGVLAVK  216 (265)
Q Consensus       177 ~~~~~~~~-----~---~--~~~~~d--i~~~s~sK~~~g~~g~~~G~v~~~  216 (265)
                      +|....+.     .   .  ...+..  +.+.|+||.+ +.+|+|+||++.+
T Consensus       192 ~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~-~~pGlRlG~~~~~  242 (388)
T PRK08637        192 AYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEE-FVWGFRVGFITFG  242 (388)
T ss_pred             cchhcccCCccchhhHHHhhcccccceEEEeccccccC-CCcccceEEEEEc
Confidence            99743321     0   0  011232  4456999988 5678999999865

>PRK14012 cysteine desulfurase; Provisional

Probab=99.85  E-value=2.7e-20  Score=165.07  Aligned_cols=160  Identities=22%  Similarity=0.236  Sum_probs=130.7

Q ss_pred             hHHHHHHHHHhHhCCC-c-eEEecchHHHHH-HHHHh----cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-
Q 024619           56 TRDALESLLAKLDKAD-R-ALCFTSGMAALA-AVTHL----LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-  127 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~-~-~i~~~~g~~al~-~~~~~----~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-  127 (265)
                      ..+++++.+++++|.+ + ++++++|++++. ++..+    ..+||+|++++++|+++...+.. ++..|++++.++.+ 
T Consensus        50 ~~~~~r~~ia~~~g~~~~~v~~~~g~t~al~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~-~~~~g~~~~~v~~~~  128 (404)
T PRK14012         50 AVDIARNQIADLIGADPREIVFTSGATESDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQ-LEREGFEVTYLDPQS  128 (404)
T ss_pred             HHHHHHHHHHHHcCcCcCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHHH-HHhCCCEEEEEccCC
Confidence            4778899999999986 3 566666678875 44444    47899999999999988766643 34568898888753 


Q ss_pred             ----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEecccccc
Q 024619          128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI  202 (265)
Q Consensus       128 ----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~~  202 (265)
                          |++++++++.+++++|++++++||||.+.|+++|.++|+++|+++++|++++.|... +....+.|++++|++|.+
T Consensus       129 ~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~  208 (404)
T PRK14012        129 NGIIDLEKLEAAMRDDTILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQSVGKVPIDLSKLKVDLMSFSAHKIY  208 (404)
T ss_pred             CCcCCHHHHHHhcCCCCEEEEEECcCCCccchhhHHHHHHHHHHcCCEEEEEcchhcCCcccCcccCCCCEEEEehhhcc
Confidence                899999999999999999999999999999999999999999999999999988775 444567999999999976


Q ss_pred             ccCCCceeeEEEeechh
Q 024619          203 AGHSDVMAGVLAVKGER  219 (265)
Q Consensus       203 ~g~~g~~~G~v~~~~~~  219 (265)
                       ||+|  .|+++.+++.
T Consensus       209 -gp~g--~G~l~~~~~~  222 (404)
T PRK14012        209 -GPKG--IGALYVRRKP  222 (404)
T ss_pred             -CCCc--eEEEEEecCC
Confidence             6766  4666666543

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=99.85  E-value=3.1e-20  Score=161.86  Aligned_cols=160  Identities=26%  Similarity=0.282  Sum_probs=131.0

Q ss_pred             hHHHHHHHHHhHhCCC-ceEEecch-HHHHH-HHHHhc----CCC-CEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC
Q 024619           56 TRDALESLLAKLDKAD-RALCFTSG-MAALA-AVTHLL----GTG-EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC  127 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~-~~i~~~~g-~~al~-~~~~~~----~~g-~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  127 (265)
                      ..+++++.+++++|.+ +.+++++| ++++. ++..+.    .+| +.|+++...|+++...+.. ++..|++++.++.+
T Consensus        43 ~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~~vi~~~~~~~s~~~~~~~-~~~~G~~v~~v~~~  121 (353)
T TIGR03235        43 AVERARKQVAEALGADTEEVIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEHPAVLEPIRA-LERNGFTVTYLPVD  121 (353)
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhcccCCCCeeeEcccccHHHHHHHHH-HHhcCCEEEEEccC
Confidence            3678999999999986 45556655 58875 555554    356 7899999899988777643 35679999988753


Q ss_pred             -----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCC-CCCCccEEEeccccc
Q 024619          128 -----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRP-LELGADIVMHSATKF  201 (265)
Q Consensus       128 -----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~-~~~~~di~~~s~sK~  201 (265)
                           |++++++.+.+++++|++++++||||.+.|+++|.++|+++|+++++|++|+.|..... ...++|++++|++||
T Consensus       122 ~~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~  201 (353)
T TIGR03235       122 ESGRIDVDELADAIRPDTLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKITVDLSADRIDLISCSGHKI  201 (353)
T ss_pred             CCCcCCHHHHHHhCCCCCEEEEEEcccCCceeccCHHHHHHHHHHcCCEEEEEchhhcCCccccccccCCCEEEeehhhc
Confidence                 78999999988899999999999999999999999999999999999999998877533 345799999999998


Q ss_pred             cccCCCceeeEEEeechh
Q 024619          202 IAGHSDVMAGVLAVKGER  219 (265)
Q Consensus       202 ~~g~~g~~~G~v~~~~~~  219 (265)
                      + ||+|  .|+++.+++.
T Consensus       202 ~-gp~g--~g~l~~~~~~  216 (353)
T TIGR03235       202 Y-GPKG--IGALVIRKRG  216 (353)
T ss_pred             C-CCCc--eEEEEEccCc
Confidence            6 7888  4888888753

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=99.85  E-value=8.3e-21  Score=166.53  Aligned_cols=165  Identities=27%  Similarity=0.388  Sum_probs=140.9

Q ss_pred             hhHHHHHHHHHhHhCCCc---eEEecchHHHHH-HHHHh---cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC-
Q 024619           55 PTRDALESLLAKLDKADR---ALCFTSGMAALA-AVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-  126 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~---~i~~~~g~~al~-~~~~~---~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~-  126 (265)
                      ...+++++.+++++|++.   ++++.+++.++. ++.++   .++|++|++....|++....|..+.+..|+++..++. 
T Consensus        43 ~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~  122 (371)
T PF00266_consen   43 EILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASSLLNPLKPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPAD  122 (371)
T ss_dssp             HHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHHHHHHGTTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEG
T ss_pred             HHHHHHHHHHHHhcCCccccccccccccchhhhhhhhccccccccccccccccccccccccccccccccchhhhcccccc
Confidence            358899999999999875   445555568886 56666   6899999999999999998888888888999988874 


Q ss_pred             ----CCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEeccccc
Q 024619          127 ----CDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKF  201 (265)
Q Consensus       127 ----~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~  201 (265)
                          .|++++++.+.+++++|++++.+|.+|.+.|+++|.++||++|+++++|.+++.|... +..+.++|++++|.+| 
T Consensus       123 ~~~~~~~~~~~~~l~~~~~lv~~~~~~~~tG~~~pi~~I~~~~~~~~~~~~vD~~~~~g~~~id~~~~~~D~~~~s~~K-  201 (371)
T PF00266_consen  123 PGGSLDLEDLEEALNPDTRLVSISHVENSTGVRNPIEEIAKLAHEYGALLVVDAAQSAGCVPIDLDELGADFLVFSSHK-  201 (371)
T ss_dssp             TTSSCSHHHHHHHHHTTESEEEEESBETTTTBBSSHHHHHHHHHHTTSEEEEE-TTTTTTSS--TTTTTESEEEEESTS-
T ss_pred             ccchhhhhhhhhhhccccceEEeecccccccEEeeeceehhhhhccCCceeEechhccccccccccccccceeeecccc-
Confidence                3899999999999999999999999999999999999999999999999999999886 4456689999999999 


Q ss_pred             cccCCCceeeEEEeechhHHH
Q 024619          202 IAGHSDVMAGVLAVKGERLAK  222 (265)
Q Consensus       202 ~~g~~g~~~G~v~~~~~~~~~  222 (265)
                      ++||+|+  |+++.+++.+..
T Consensus       202 l~gp~G~--g~l~v~~~~~~~  220 (371)
T PF00266_consen  202 LGGPPGL--GFLYVRPEAIER  220 (371)
T ss_dssp             TTSSSTE--EEEEEEHHHHHH
T ss_pred             cCCCCch--hhheehhhhhhc
Confidence            8899995  999998865433

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=99.85  E-value=1.1e-20  Score=160.69  Aligned_cols=157  Identities=22%  Similarity=0.278  Sum_probs=125.5

Q ss_pred             hhHHHHHHHHHhHhCCCceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC------
Q 024619           55 PTRDALESLLAKLDKADRALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT------  126 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~------  126 (265)
                      ...+++++.+++++|++..+++++|+ +++. ++.+++++||+|++++++|.+....+    ...|+++++++.      
T Consensus        59 g~i~~~~~~~A~~~ga~~~~~~~~Gst~a~~~~l~al~~~gd~Vlv~~~~h~s~~~~~----~~~g~~~~~v~~~~~~~~  134 (294)
T cd00615          59 GPIKEAQELAARAFGAKHTFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGL----VLSGAVPVYLKPERNPYY  134 (294)
T ss_pred             hHHHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHHHHcCCCCCEEEEeCCchHHHHHHH----HHCCCEEEEecCccCccc
Confidence            35899999999999999877756664 7775 77888999999999999998887443    456888887753      


Q ss_pred             -----CCHHHHHhhcC--CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCC-----Cc-CCCCCCccE
Q 024619          127 -----CDLDEVASAIG--PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV-----LS-RPLELGADI  193 (265)
Q Consensus       127 -----~d~~~l~~~~~--~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~-----~~-~~~~~~~di  193 (265)
                           .|++++++++.  +++++|++++| |++|.+.|+++|+++|+++|+++++|++|+...     .. .....+.|+
T Consensus       135 ~~~~~i~~~~l~~~l~~~~~~k~v~l~~p-~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~~~~di  213 (294)
T cd00615         135 GIAGGIPPETFKKALIEHPDAKAAVITNP-TYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMAGADI  213 (294)
T ss_pred             CcCCCCCHHHHHHHHHhCCCceEEEEECC-CCCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhhcCCcE
Confidence                 37899999885  46899999998 789999999999999999999999999997532     11 233457999


Q ss_pred             EEeccccccccCCCceeeEEEeech
Q 024619          194 VMHSATKFIAGHSDVMAGVLAVKGE  218 (265)
Q Consensus       194 ~~~s~sK~~~g~~g~~~G~v~~~~~  218 (265)
                      ++.|+||+++|+.+  +|++..++.
T Consensus       214 v~~S~hK~l~g~~~--~~~l~~~~~  236 (294)
T cd00615         214 VVQSTHKTLPALTQ--GSMIHVKGD  236 (294)
T ss_pred             EEEchhcccchHhH--HHHHHhCCC
Confidence            99999999966542  466666554

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=99.85  E-value=1.1e-19  Score=158.21  Aligned_cols=164  Identities=23%  Similarity=0.241  Sum_probs=130.6

Q ss_pred             ChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHh-cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC----
Q 024619           54 NPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (265)
Q Consensus        54 ~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~-~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----  127 (265)
                      .+...++++.+++++|.+.++++++|++|+. ++..+ +++||+|+++.++|.++...    +...|.+++.++.+    
T Consensus        17 ~~~~~~~~~~la~~~~~~~~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~   92 (352)
T cd00616          17 GPKVREFEKAFAEYLGVKYAVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATANA----ILLLGATPVFVDIDPDTY   92 (352)
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHH----HHHcCCeEEEEecCCCcC
Confidence            3679999999999999988999999999986 56666 58999999999999888644    35578888888753    


Q ss_pred             --CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCC--CCCCccEEEeccc--cc
Q 024619          128 --DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRP--LELGADIVMHSAT--KF  201 (265)
Q Consensus       128 --d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~--~~~~~di~~~s~s--K~  201 (265)
                        |++++++.+.+++++|++++   ++|.+.|+++|.++|+++|+++|+|++|+.|.....  .....|+.+.|++  |+
T Consensus        93 ~~d~~~l~~~i~~~~~~v~~~~---~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~~~~~~~~~~~d~~~~S~~~~K~  169 (352)
T cd00616          93 NIDPELIEAAITPRTKAIIPVH---LYGNPADMDAIMAIAKRHGLPVIEDAAQALGATYKGRKVGTFGDAGAFSFHPTKN  169 (352)
T ss_pred             CcCHHHHHHhcCcCCeEEEEEC---CCCCcCCHHHHHHHHHHcCCeEEEECCCCCCCeECCEEcccCcceeEEcCCCCCC
Confidence              68999999988899998764   689999999999999999999999999998765422  2222588888876  99


Q ss_pred             cccCCCceeeEEEeechhHHHHHHHH
Q 024619          202 IAGHSDVMAGVLAVKGERLAKELYFL  227 (265)
Q Consensus       202 ~~g~~g~~~G~v~~~~~~~~~~~~~~  227 (265)
                      ++++.   +|+++.+++.+.+.....
T Consensus       170 ~~~~~---gg~~~~~~~~~~~~~~~~  192 (352)
T cd00616         170 LTTGE---GGAVVTNDEELAERARLL  192 (352)
T ss_pred             CcccC---ceEEEECCHHHHHHHHHH
Confidence            95433   688888765555544443

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=99.85  E-value=1.6e-20  Score=165.19  Aligned_cols=160  Identities=24%  Similarity=0.241  Sum_probs=130.5

Q ss_pred             hHHHHHHHHHhHhCCC-c-eEEecchHHHHH-HHHHhc---CCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC--
Q 024619           56 TRDALESLLAKLDKAD-R-ALCFTSGMAALA-AVTHLL---GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--  127 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~-~-~i~~~~g~~al~-~~~~~~---~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--  127 (265)
                      ..+++++.+++++|++ + ++++++|++++. ++..+.   .+|+.|+++..+|+++...+..+ +..|++++.++.+  
T Consensus        43 ~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~al~~~~~~~~~~~~vv~~~~~~~s~~~~~~~~-~~~G~~v~~v~~~~~  121 (379)
T TIGR03402        43 AVEEAREQVAKLLGAEPDEIIFTSGGTESDNTAIKSALAAQPEKRHIITTAVEHPAVLSLCQHL-EKQGYKVTYLPVDEE  121 (379)
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHhcCCCCeEEEcccccHHHHHHHHHH-HHcCCEEEEEccCCC
Confidence            4778889999999976 3 445555668875 455443   45789999999998887776444 4578999988753  


Q ss_pred             ---CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEeccccccc
Q 024619          128 ---DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIA  203 (265)
Q Consensus       128 ---d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~~~  203 (265)
                         |++++++.+.++++++++++++|+||.+.|+++|.++|+++|+++++|++|+.|... +....+.|+++.|.+|+ .
T Consensus       122 g~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~~~~~g~~~~~~~~~~~D~~~~s~~K~-~  200 (379)
T TIGR03402       122 GRLDLEELRAAITDDTALVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQAVGKIPIDLKEMNIDMLSLSGHKL-H  200 (379)
T ss_pred             CcCCHHHHHHhcCCCcEEEEEEcccCCeeecccHHHHHHHHHHcCCEEEEECcccccccccCcccCCCCEEEEcHHHc-C
Confidence               789999999989999999999999999999999999999999999999999988765 34456899999999995 5


Q ss_pred             cCCCceeeEEEeechh
Q 024619          204 GHSDVMAGVLAVKGER  219 (265)
Q Consensus       204 g~~g~~~G~v~~~~~~  219 (265)
                      ||+|  .|+++.++..
T Consensus       201 gp~G--~g~l~v~~~~  214 (379)
T TIGR03402       201 GPKG--VGALYIRKGT  214 (379)
T ss_pred             CCCc--eEEEEECCCC
Confidence            8988  4888777643

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=99.85  E-value=8.5e-20  Score=161.54  Aligned_cols=166  Identities=25%  Similarity=0.273  Sum_probs=131.9

Q ss_pred             CCh-hHHHHHHHHHhHhCCC--ceEEecchH-HHHHH-HHHhcCC--CCEEEEcCCCCCChHHHHHhhcCCCCeEEEeec
Q 024619           53 GNP-TRDALESLLAKLDKAD--RALCFTSGM-AALAA-VTHLLGT--GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN  125 (265)
Q Consensus        53 g~~-~~~~l~~~l~~~~g~~--~~i~~~~g~-~al~~-~~~~~~~--g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~  125 (265)
                      |.+ .++++++++++++|.+  +++++++|+ ++..+ ......+  ||+|+++++.|+++...+....+..|.+++.++
T Consensus        61 g~~~~~~~~~~~la~~~g~~~~~v~~~~~g~~~~~~~~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~  140 (398)
T cd00613          61 GRLQALFELQTMLCELTGMDVANASLQDEATAAAEAAGLAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVP  140 (398)
T ss_pred             hHHHHHHHHHHHHHHHHCCCccceeccCchHHHHHHHHHHHHhcccCCCEEEEcCccCcchHHHHHHhcccCCcEEEEec
Confidence            665 5999999999999987  566666666 45443 3444665  999999999999998777655556678888887


Q ss_pred             CC-----CHHHHHhhcCCCceEEEEecCCCCccccccH-HHHHHHHHHcCCEEEEeCCcCCCCC-cCCCCCCccEEEecc
Q 024619          126 TC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDI-RKIAEMAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSA  198 (265)
Q Consensus       126 ~~-----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l-~~i~~~a~~~~~~li~D~~~~~~~~-~~~~~~~~di~~~s~  198 (265)
                      .+     |++++++++.+++++|++++++ ++|.+.|+ ++|.++|+++|+++|+|++|+.+.. ..+...++|++++|+
T Consensus       141 ~~~~~~~d~~~l~~~i~~~t~~viv~~~~-~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~~~~~~~~~~~d~~~~s~  219 (398)
T cd00613         141 SDEGGTVDLEALKEEVSEEVAALMVQYPN-TLGVFEDLIKEIADIAHSAGALVYVDGDNLNLTGLKPPGEYGADIVVGNL  219 (398)
T ss_pred             cCCCCCcCHHHHHHhcCCCeEEEEEECCC-CCceecchHHHHHHHHHhcCCEEEEEeccccccCCCChHHcCCCEEEeec
Confidence            54     6899999998899999999985 89999885 9999999999999999999875543 334566899999999


Q ss_pred             ccccccC---CCceeeEEEeechhH
Q 024619          199 TKFIAGH---SDVMAGVLAVKGERL  220 (265)
Q Consensus       199 sK~~~g~---~g~~~G~v~~~~~~~  220 (265)
                      |||+ +|   +|.++|+++.+++.+
T Consensus       220 ~K~~-~p~g~Ggp~~g~l~~~~~~~  243 (398)
T cd00613         220 QKTG-VPHGGGGPGAGFFAVKKELV  243 (398)
T ss_pred             cccC-CCCCCCCCceeEEEEhhhhH
Confidence            9998 54   245579998876543

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>TIGR02006 IscS cysteine desulfurase IscS

Probab=99.85  E-value=5e-20  Score=163.25  Aligned_cols=160  Identities=23%  Similarity=0.247  Sum_probs=130.3

Q ss_pred             hHHHHHHHHHhHhCCC-ceEEec-chHHHHH-HHHHh----cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-
Q 024619           56 TRDALESLLAKLDKAD-RALCFT-SGMAALA-AVTHL----LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-  127 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~-~~i~~~-~g~~al~-~~~~~----~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-  127 (265)
                      ..+++++.+++++|.+ +.++++ ++++++. ++..+    .++||+|+++.++|+++...+.. ++..|++++.++.+ 
T Consensus        48 ~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~-~~~~g~~v~~v~~~~  126 (402)
T TIGR02006        48 AVENARNQVAELIGADSREIVFTSGATESNNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRY-LEREGFEVTYLPPKS  126 (402)
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEECCCccHHHHHHHHH-HHhcCCEEEEEccCC
Confidence            4778899999999976 344444 5558875 44443    36899999999999988776643 35578999988753 


Q ss_pred             ----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEecccccc
Q 024619          128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI  202 (265)
Q Consensus       128 ----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~~  202 (265)
                          |++++++++.+++++|++++++||||.+.|+++|.++|+++|+++++|++++.|..+ +..+.+.|++++|++|++
T Consensus       127 ~~~~d~~~l~~~l~~~~~lv~v~~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~a~g~~~~~~~~~~~D~~~~s~~K~~  206 (402)
T TIGR02006       127 NGLIDLEELKAAIRDDTILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVGKIPINVNELKVDLMSISGHKIY  206 (402)
T ss_pred             CCcCCHHHHHHhcCCCCEEEEEECCCcCceecccHHHHHHHHHHcCCEEEEEcchhcCCcccCccccCCCEEEEehhhhc
Confidence                799999999888999999999999999999999999999999999999999988775 344568999999999976


Q ss_pred             ccCCCceeeEEEeechh
Q 024619          203 AGHSDVMAGVLAVKGER  219 (265)
Q Consensus       203 ~g~~g~~~G~v~~~~~~  219 (265)
                       ||+|  .|+++.+++.
T Consensus       207 -gp~G--~G~l~~~~~~  220 (402)
T TIGR02006       207 -GPKG--IGALYVRRKP  220 (402)
T ss_pred             -CCCc--eEEEEEccCC
Confidence             7878  4777777543

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>PRK07908 hypothetical protein; Provisional

Probab=99.84  E-value=1.7e-20  Score=163.26  Aligned_cols=160  Identities=19%  Similarity=0.231  Sum_probs=115.8

Q ss_pred             CccCCC-CChhHHHHHHHHHhHhCCC-ceEEecchH-HHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEe
Q 024619           47 YDYTRS-GNPTRDALESLLAKLDKAD-RALCFTSGM-AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKR  123 (265)
Q Consensus        47 ~~y~~~-g~~~~~~l~~~l~~~~g~~-~~i~~~~g~-~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~  123 (265)
                      ..|++. |.   .++++.+++++|.+ +.|++++|+ +++.++.. +++| .+++..|+|..+.    ..++..|++++.
T Consensus        52 ~~Y~~~~g~---~~lr~aia~~~~~~~~~I~it~Ga~~al~~~~~-l~~~-~viv~~P~y~~~~----~~~~~~G~~i~~  122 (349)
T PRK07908         52 AAYPSTEDE---RRARAAVAARHGRTPDEVLLLAGAAEGFALLAR-LRPR-RAAVVHPSFTEPE----AALRAAGIPVHR  122 (349)
T ss_pred             hcCCCccch---HHHHHHHHHHhCcChhhEEECCCHHHHHHHHHh-cCCC-eEEEeCCCChHHH----HHHHHcCCEEEe
Confidence            356654 44   34555555566655 567777765 88875545 6775 5677889998775    455778999998


Q ss_pred             ecCC-----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc---CC--CCCCccE
Q 024619          124 VNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS---RP--LELGADI  193 (265)
Q Consensus       124 ~~~~-----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~---~~--~~~~~di  193 (265)
                      ++.+     |++    .+.++++++++++|+||||.+.+.++|.++|++ +.++|+||+|+.....   ..  ...+..+
T Consensus       123 v~~~~~~~~d~~----~l~~~~~~i~l~np~NPTG~~~~~~~l~~l~~~-~~~iIvDe~y~~~~~~~~~~l~~~~~~~~i  197 (349)
T PRK07908        123 VVLDPPFRLDPA----AVPDDADLVVIGNPTNPTSVLHPAEQLLALRRP-GRILVVDEAFADAVPGEPESLAGDDLPGVL  197 (349)
T ss_pred             eccCcccCcChh----HhccCCCEEEEcCCCCCCCCCcCHHHHHHHHhc-CCEEEEECcchhhccCCccccccccCCCEE
Confidence            8865     333    235678999999999999999999999999975 7889999998642111   11  1234568


Q ss_pred             EEeccccccccCCCceeeEEEeechhHH
Q 024619          194 VMHSATKFIAGHSDVMAGVLAVKGERLA  221 (265)
Q Consensus       194 ~~~s~sK~~~g~~g~~~G~v~~~~~~~~  221 (265)
                      ++.|+||.+ +.+|+|+||++.+++.+.
T Consensus       198 ~i~S~SK~~-~l~GlRiG~~~~~~~~~~  224 (349)
T PRK07908        198 VLRSLTKTW-SLAGLRVGYALGAPDVLA  224 (349)
T ss_pred             EEeeccccc-CCccceeeeeecCHHHHH
Confidence            899999999 778999999998765443

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=99.84  E-value=2.5e-20  Score=164.10  Aligned_cols=162  Identities=22%  Similarity=0.189  Sum_probs=125.0

Q ss_pred             CChhHHHHHHHHHhHhCC--CceEEecch-HHHHH-HHHHh-----cCC-CCEEEEcCCCCCChHHHHHhhcCCCCeEEE
Q 024619           53 GNPTRDALESLLAKLDKA--DRALCFTSG-MAALA-AVTHL-----LGT-GEEIVAGDDLYGGTDRLLSRVTPKTGVVVK  122 (265)
Q Consensus        53 g~~~~~~l~~~l~~~~g~--~~~i~~~~g-~~al~-~~~~~-----~~~-g~~viv~~~~~~~~~~~~~~~~~~~g~~~~  122 (265)
                      +.+..++..+.+.+.+|+  .+.+++++| ++++. ++..+     +++ +++|+++...|+++...+. .++..|++++
T Consensus        40 ~~~~l~~a~~~~~~~~~~~~~~~i~~t~g~teal~~~~~~~~~~~~~~~~~~~vi~~~~e~ps~~~~~~-~~~~~G~~v~  118 (382)
T TIGR03403        40 THPAIAEALDKLYKGINARDLDDIIITSCATESNNWVLKGVYFDEILKGGKNHIITTEVEHPAVRATCA-FLESLGVEVT  118 (382)
T ss_pred             HHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHHHHhhcccCCCCEEEEcCCccHHHHHHHH-HHHHCCCEEE
Confidence            333444444455555664  245555555 58886 44443     255 4789999999998887763 4567899999


Q ss_pred             eecCC-----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEe
Q 024619          123 RVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMH  196 (265)
Q Consensus       123 ~~~~~-----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~  196 (265)
                      .++.+     |++++++++.++++++++++++||||.+.|+++|.++|+++|+++++|++++.|... +....+.|+++.
T Consensus       119 ~v~~~~~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~~ivD~a~~~g~~~~~~~~~~~D~~~~  198 (382)
T TIGR03403       119 YLPINEQGTITAEQVREAITEKTALVSVMWANNETGMIFPIKEIGEICKERGVLFHTDAVQAIGKIPVDVQKAGVDFLSF  198 (382)
T ss_pred             EEecCCCCCCCHHHHHHhcccCCeEEEEEcccCCCccccCHHHHHHHHHHcCCEEEEechhhcCCCccCccccCCCEEEE
Confidence            98864     789999999888999999999999999999999999999999999999999988664 344568999999


Q ss_pred             ccccccccCCCceeeEEEeech
Q 024619          197 SATKFIAGHSDVMAGVLAVKGE  218 (265)
Q Consensus       197 s~sK~~~g~~g~~~G~v~~~~~  218 (265)
                      |++||+ ||+|+  |+++.++.
T Consensus       199 s~~K~~-gp~G~--g~l~vr~~  217 (382)
T TIGR03403       199 SAHKFH-GPKGV--GGLYIRKG  217 (382)
T ss_pred             cchhhC-CCCce--EEEEECCC
Confidence            999986 78885  77766654

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>PLN02721 threonine aldolase

Probab=99.84  E-value=5.5e-20  Score=160.12  Aligned_cols=170  Identities=25%  Similarity=0.255  Sum_probs=125.7

Q ss_pred             hhHHHHHHHHHhHhCCCceEEecchHHHH-HHHHHhcC-CCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC-----C
Q 024619           55 PTRDALESLLAKLDKADRALCFTSGMAAL-AAVTHLLG-TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----C  127 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~g~~al-~~~~~~~~-~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----~  127 (265)
                      |...++++.+++++|.+..+++++|++++ .++..+++ +||+|++++|+|.+..... ..+...|.+++.++.     .
T Consensus        40 ~~~~~l~~~la~~~~~~~~~~~~~Gs~a~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~~  118 (353)
T PLN02721         40 PTALRLEEEMAKIFGKEAALFVPSGTMGNLISVLVHCDVRGSEVILGDNSHIHLYENG-GISTLGGVHPRTVKNNEDGTM  118 (353)
T ss_pred             HHHHHHHHHHHHHhCCceeEEecCccHHHHHHHHHHccCCCCeEEEcCccceehhccc-chhhhcCceeEecCCCcCCCc
Confidence            55789999999999998888999998665 45666676 9999999999986554210 145677899988874     3


Q ss_pred             CHHHHHhhcC-------CCceEEEEec-CCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCC---c-CC--CCCC
Q 024619          128 DLDEVASAIG-------PWTKLVWVES-PTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVL---S-RP--LELG  190 (265)
Q Consensus       128 d~~~l~~~~~-------~~~~~i~~~~-~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~---~-~~--~~~~  190 (265)
                      |++++++.+.       +++++|++++ ++||+|.+.|   +++|.++|+++|+++++|++|..+..   . .+  ...+
T Consensus       119 d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~  198 (353)
T PLN02721        119 DLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPVHRLVKA  198 (353)
T ss_pred             CHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHHHHhhh
Confidence            7899999887       5889999977 4678998866   78999999999999999999865431   1 11  1236


Q ss_pred             ccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHH
Q 024619          191 ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN  229 (265)
Q Consensus       191 ~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~  229 (265)
                      .|.++.|+||+++++.   +++++.+++ +.+.......
T Consensus       199 ~d~~~~s~sK~l~~~~---G~~~~~~~~-~~~~~~~~~~  233 (353)
T PLN02721        199 ADSVSVCLSKGLGAPV---GSVIVGSKS-FIRKAKRLRK  233 (353)
T ss_pred             CCEEEEecccccCCce---eeEEecCHH-HHHhHHHHHH
Confidence            7888999999996542   344555554 4343334443

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=99.84  E-value=4.9e-20  Score=161.19  Aligned_cols=162  Identities=20%  Similarity=0.234  Sum_probs=128.3

Q ss_pred             hHHHHHHHHHhHhCCCc---eE-EecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC---
Q 024619           56 TRDALESLLAKLDKADR---AL-CFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~~---~i-~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---  127 (265)
                      ..+++++.+++++|++.   .+ ++++|++++. ++.+++.+||.+++..+.+.+..  +...++..|.+++.++.+   
T Consensus        36 ~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~~~~~~vlv~~~~~~~~~--~~~~a~~~g~~~~~v~~~~~~  113 (363)
T TIGR02326        36 VVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAVPKDGKLLVVINGAYGAR--IVQIAEYLGIPHHVVDTGEVE  113 (363)
T ss_pred             HHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcCCCCCeEEEEeCChhhHH--HHHHHHHcCCceEEEeCCCCC
Confidence            47889999999999862   34 5556679986 66778888888776555443331  235567788888888754   


Q ss_pred             --CHHHHHhhcCC--CceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEecccccc
Q 024619          128 --DLDEVASAIGP--WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI  202 (265)
Q Consensus       128 --d~~~l~~~~~~--~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~~  202 (265)
                        |++++++++.+  +++++.+++++||||.+.|+++|+++|+++|+++++|++++.|..+ +....+.|++++|++||+
T Consensus       114 ~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~i~~I~~l~~~~g~~livD~~~~~g~~~~~~~~~~~D~~~~s~~K~l  193 (363)
T TIGR02326       114 PPDVVEVEAILAADPAITHIALVHCETTTGILNPIEAVAKLAHRHGKVTIVDAMSSFGGIPIDIAELHIDYLISSANKCI  193 (363)
T ss_pred             CCCHHHHHHHHhhCCCccEEEEEeecCCccccCcHHHHHHHHHHcCCEEEEEccccccCcccchhhcCccEEEecCcccc
Confidence              78999998863  4678889999999999999999999999999999999999988764 334568999999999999


Q ss_pred             ccCCCceeeEEEeechhHH
Q 024619          203 AGHSDVMAGVLAVKGERLA  221 (265)
Q Consensus       203 ~g~~g~~~G~v~~~~~~~~  221 (265)
                      +||+|+  |+++++++.+.
T Consensus       194 ~~p~G~--G~l~~~~~~~~  210 (363)
T TIGR02326       194 QGVPGF--GFVIARQAELA  210 (363)
T ss_pred             ccCCcc--eEEEECHHHHH
Confidence            899884  99988876553

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=99.84  E-value=1.7e-19  Score=160.68  Aligned_cols=199  Identities=20%  Similarity=0.174  Sum_probs=154.7

Q ss_pred             hhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHh---------cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEee
Q 024619           55 PTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL---------LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV  124 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~---------~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~  124 (265)
                      +..+++++.+++++|.+.+++++||++|+. ++..+         +++||+|+++.++|+.+...+    ...|.+++.+
T Consensus        63 ~~~~~fe~~lA~~~g~~~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v----~~~G~~pv~v  138 (438)
T PRK15407         63 RFNDAFEKKLAEFLGVRYALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPI----IQNGLVPVFV  138 (438)
T ss_pred             hhHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHH----HHcCCEEEEE
Confidence            568899999999999998999999998875 44443         588999999999999887443    4578888888


Q ss_pred             cCC------CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCC--CCCCccEEEe
Q 024619          125 NTC------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRP--LELGADIVMH  196 (265)
Q Consensus       125 ~~~------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~--~~~~~di~~~  196 (265)
                      +++      |++++++++.+++++|+++++   .|...++++|.++|+++|++||+|++|+.|.....  ...-.|+.++
T Consensus       139 dvd~~~~~id~~~le~~i~~~tkaVi~~~~---~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~~~G~~gd~~~f  215 (438)
T PRK15407        139 DVELPTYNIDASLLEAAVSPKTKAIMIAHT---LGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTYDGRMTGTFGDIATL  215 (438)
T ss_pred             ecCCCcCCcCHHHHHHHcCcCCeEEEEeCC---CCChhhHHHHHHHHHHCCCEEEEECccchhhhcCCeeeeccCceEEE
Confidence            753      789999999889999998864   67778999999999999999999999998876432  2222388888


Q ss_pred             ccc--cccccCCCceeeEEEeechhHHHHHHHHHHhc---------------------------------------cCCC
Q 024619          197 SAT--KFIAGHSDVMAGVLAVKGERLAKELYFLQNAE---------------------------------------GSGL  235 (265)
Q Consensus       197 s~s--K~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~---------------------------------------~~~~  235 (265)
                      ||+  |.+....   +|+++.+++.+.+........+                                       ...+
T Consensus       216 Sf~~~k~~~~ge---GG~l~t~d~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~rm  292 (438)
T PRK15407        216 SFYPAHHITMGE---GGAVFTNDPLLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSHLGYNLKI  292 (438)
T ss_pred             eCCCCCCccccC---ceEEEECCHHHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccccccCc
Confidence            875  5554333   6999999988877555443311                                       1235


Q ss_pred             ChhHHHHHHhccCchHhhHHHHhhchhc
Q 024619          236 APFDCWICLRGVKTMALRVEKQQVCFFD  263 (265)
Q Consensus       236 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~  263 (265)
                      +...+++.+.+|+++....++.++++..
T Consensus       293 sel~AAig~~qL~~l~~~~~~R~~~a~~  320 (438)
T PRK15407        293 TDMQAAIGLAQLEKLPGFIEARKANFAY  320 (438)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677888999999988777777776654

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=99.84  E-value=9.6e-20  Score=162.98  Aligned_cols=173  Identities=20%  Similarity=0.198  Sum_probs=132.3

Q ss_pred             CCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEe
Q 024619           45 GPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKR  123 (265)
Q Consensus        45 ~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~  123 (265)
                      +...|+..  +...++++.++++++.+.++++++|++|+. ++..+++||| |++++|.|..+.    ...+..|.+++.
T Consensus        70 g~~~Y~~~--~g~~~Lreaia~~~~~~~vv~t~ggt~A~~~~~~all~pGD-Vii~~p~~~~~~----~~i~~~G~~~v~  142 (460)
T PRK13238         70 GDEAYAGS--RSYYRLEDAVKDIFGYPYTIPTHQGRAAEQILFPVLIKKGD-VVPSNYHFDTTR----AHIELNGATAVD  142 (460)
T ss_pred             CCcccCCC--CCHHHHHHHHHHHhCCCcEEECCCHHHHHHHHHHHhCCCCC-EEccCCcccchH----HHHHHcCCEEEE
Confidence            44567666  446667778888889888888888889986 6778899999 999999999886    444678889888


Q ss_pred             ecC---------------CCHHHHHhhcC----CCceEEEEecCCCCcc-cccc---HHHHHHHHHHcCCEEEEeCCcCC
Q 024619          124 VNT---------------CDLDEVASAIG----PWTKLVWVESPTNPRQ-QICD---IRKIAEMAHAHGALLLVDNSIMS  180 (265)
Q Consensus       124 ~~~---------------~d~~~l~~~~~----~~~~~i~~~~~~np~G-~~~~---l~~i~~~a~~~~~~li~D~~~~~  180 (265)
                      ++.               .|++++++.+.    +++++|++++|+||+| .+.+   +++|.++|++||++||+|+++..
T Consensus       143 v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~  222 (460)
T PRK13238        143 LVIDEALDTGSRHPFKGNFDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFA  222 (460)
T ss_pred             EeccccccccccccccCCcCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchh
Confidence            865               47899999987    3699999999999998 6654   68999999999999999998743


Q ss_pred             C-C----------CcCCC-------CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHH
Q 024619          181 P-V----------LSRPL-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL  227 (265)
Q Consensus       181 ~-~----------~~~~~-------~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~  227 (265)
                      . .          .....       ....|+++.|.+|...+|.   +|+++.++..+.+..+..
T Consensus       223 e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~~---GG~i~~~d~~l~~~~~~~  284 (460)
T PRK13238        223 ENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMVNI---GGLLCFRDEDLFTECRTL  284 (460)
T ss_pred             hhhhhhhhccccccCCCHHHHhhhhcccCcEEEEecccCCCCcc---eeEEEcChHHHHHHhhhc
Confidence            1 1          11110       1237899999999876654   589988865555544333

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=99.84  E-value=1.5e-19  Score=140.60  Aligned_cols=154  Identities=28%  Similarity=0.338  Sum_probs=125.5

Q ss_pred             HHHHHHHHHhHh--CCCceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCC-----
Q 024619           57 RDALESLLAKLD--KADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCD-----  128 (265)
Q Consensus        57 ~~~l~~~l~~~~--g~~~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d-----  128 (265)
                      .+++++.+++++  +.+..+++++|++|+. ++..+.+++++|++.++.|++...   ..++..|.+++.++.++     
T Consensus         2 ~~~~~~~l~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~~   78 (170)
T cd01494           2 LEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYW---VAAELAGAKPVPVPVDDAGYGG   78 (170)
T ss_pred             HHHHHHHHHHHcCCCCCcEEEeCCcHHHHHHHHHHhCCCCCEEEEeecccceehh---hHHHhcCCEEEEeccCCCCccc
Confidence            467899999999  7778888888889986 667777889999999999988862   34577888998887541     


Q ss_pred             --HHHHHhhc-CCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcC----CCCCCccEEEeccccc
Q 024619          129 --LDEVASAI-GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR----PLELGADIVMHSATKF  201 (265)
Q Consensus       129 --~~~l~~~~-~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~----~~~~~~di~~~s~sK~  201 (265)
                        .+++++.. .++++++++++++|++|...|+++|.++|+++|+++++|++|+.+....    ....+.|+++.|++|+
T Consensus        79 ~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~d~~~~s~~K~  158 (170)
T cd01494          79 LDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVTFSLHKN  158 (170)
T ss_pred             hhhhhhhhccccCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEecccccccccccccccccccCCEEEEEcccc
Confidence              12444433 4678999999999999999999999999999999999999998777653    5556799999999999


Q ss_pred             cccCCCceeeEEEee
Q 024619          202 IAGHSDVMAGVLAVK  216 (265)
Q Consensus       202 ~~g~~g~~~G~v~~~  216 (265)
                      +++ ++  +|+++++
T Consensus       159 ~~~-~~--~G~l~~~  170 (170)
T cd01494         159 LGG-EG--GGVVIVK  170 (170)
T ss_pred             cCC-Cc--eEEEEeC
Confidence            976 43  6888764

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=99.84  E-value=2.4e-19  Score=159.14  Aligned_cols=200  Identities=22%  Similarity=0.185  Sum_probs=138.8

Q ss_pred             eEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC--CChhHHHHHH----HHHhHhCCCceEE-ecchHHHHH
Q 024619           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS--GNPTRDALES----LLAKLDKADRALC-FTSGMAALA   84 (265)
Q Consensus        12 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~--g~~~~~~l~~----~l~~~~g~~~~i~-~~~g~~al~   84 (265)
                      +.+++-.++||+    +|.+..+...........++.+++.  |++..+++++    .+++++|.+.+++ ++||+.|+.
T Consensus        29 ~~~~l~~sen~~----~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g~~~alv~~~SG~~A~~  104 (416)
T PRK13034         29 DHLELIASENFT----SPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLFGCDYANVQPHSGSQANG  104 (416)
T ss_pred             cCeeecccccCC----CHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCceEEecCCcHHHHH
Confidence            345554488887    3444333211111112234556666  7788999998    9999999998865 589998875


Q ss_pred             -HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCC--CCeEE--EeecC------CCHHHHHhhcC-CCceEEEEecCCCCc
Q 024619           85 -AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPK--TGVVV--KRVNT------CDLDEVASAIG-PWTKLVWVESPTNPR  152 (265)
Q Consensus        85 -~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~--~g~~~--~~~~~------~d~~~l~~~~~-~~~~~i~~~~~~np~  152 (265)
                       ++.+++++||+|+++...|.+...   .-++.  .+...  ..+++      .|++++++.+. .++++|+++.+.  .
T Consensus       105 ~~l~al~~~GD~Vl~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~klVi~~~~~--~  179 (416)
T PRK13034        105 AVYLALLKPGDTILGMSLSHGGHLT---HGAKVSLSGKWYNAVQYGVDRLTGLIDYDEVEELAKEHKPKLIIAGFSA--Y  179 (416)
T ss_pred             HHHHHhcCCCCEEEEcCccceeeee---cCCcceeccceeeeEEcccccccCCcCHHHHHHHHhhcCCeEEEECCCc--c
Confidence             788889999999999998876321   11111  11111  23333      58888888774 467888876543  4


Q ss_pred             cccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCC----CCccEEEeccccccccCCCceeeEEEeechhHHHH
Q 024619          153 QQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLE----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE  223 (265)
Q Consensus       153 G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~----~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~  223 (265)
                      |...|+++|.++|+++|+++++|++|+.|.......    .+.|++++|++|+++||.   +|+++++++.+...
T Consensus       180 g~~~dl~~l~~la~~~g~~livD~Aha~G~~~~g~~~~~~~~~Di~~~s~~K~l~g~~---GG~v~~~~~~~~~~  251 (416)
T PRK13034        180 PRELDFARFREIADEVGALLMVDMAHIAGLVAAGEHPNPFPHAHVVTTTTHKTLRGPR---GGMILTNDEEIAKK  251 (416)
T ss_pred             ccccCHHHHHHHHHHcCCEEEEeCcccccCcccCCCCCCCCCceEEEEeCcccCCCCC---CeEEEECcHHHHHH
Confidence            778899999999999999999999999887642221    248999999999997776   48887777665443

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=99.83  E-value=1.9e-19  Score=157.70  Aligned_cols=161  Identities=21%  Similarity=0.283  Sum_probs=130.5

Q ss_pred             hHHHHHHHHHhHhCCC---c-eEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC---
Q 024619           56 TRDALESLLAKLDKAD---R-ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~---~-~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---  127 (265)
                      ..+++++.+++++|.+   + ++++++|++++. ++..+..+||.|++..+.|.+..  +...++..|++++.++.+   
T Consensus        38 ~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~~~~~~vlv~~~~~~~~~--~~~~~~~~g~~~~~i~~~~~~  115 (368)
T PRK13479         38 LTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLVPRDGKVLVPDNGAYGAR--IAQIAEYLGIAHVVLDTGEDE  115 (368)
T ss_pred             HHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCCchHHH--HHHHHHHcCCcEEEEECCCCC
Confidence            5899999999999885   3 335567788886 77888889999998877765542  235567788888888753   


Q ss_pred             --CHHHHHhhcC--CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEecccccc
Q 024619          128 --DLDEVASAIG--PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI  202 (265)
Q Consensus       128 --d~~~l~~~~~--~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~~  202 (265)
                        |++++++++.  +++++|++++++||||.+.|+++|.++|+++|+++++|++++.+... +....+.|++++|++||+
T Consensus       116 ~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~~~~i~~l~~~~~~~livDa~~~~g~~~~~~~~~~~d~~v~s~~K~l  195 (368)
T PRK13479        116 PPDAAEVEAALAADPRITHVALVHCETTTGILNPLDEIAAVAKRHGKRLIVDAMSSFGAIPIDIAELGIDALISSANKCI  195 (368)
T ss_pred             CCCHHHHHHHHHhCCCCcEEEEEcccCccccccCHHHHHHHHHHcCCEEEEEcccccCCccccccccCceEEEecCcccc
Confidence              6899998875  35678999999999999999999999999999999999998877654 233457899999999999


Q ss_pred             ccCCCceeeEEEeechhH
Q 024619          203 AGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       203 ~g~~g~~~G~v~~~~~~~  220 (265)
                      .||+|+  |+++.+++.+
T Consensus       196 ~g~~G~--G~l~~~~~~~  211 (368)
T PRK13479        196 EGVPGF--GFVIARRSEL  211 (368)
T ss_pred             ccCCCc--eEEEECHHHH
Confidence            899885  9998887654

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=99.83  E-value=8e-20  Score=155.82  Aligned_cols=161  Identities=27%  Similarity=0.308  Sum_probs=137.1

Q ss_pred             hhHHHHHHHHHhHhCCC-ceEEecch-HHHHH-HHHH--h-c---CCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeec
Q 024619           55 PTRDALESLLAKLDKAD-RALCFTSG-MAALA-AVTH--L-L---GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN  125 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~-~~i~~~~g-~~al~-~~~~--~-~---~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~  125 (265)
                      ...++.++.+++++|++ +.|++||| +++.+ ++..  . .   +.|.+|+++.-.|++..+.++.+ +..|.++.+++
T Consensus        44 ~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNlaI~g~~~a~~~~~~~~HIIts~iEH~aVl~~~~~L-e~~g~~Vtyl~  122 (386)
T COG1104          44 KAVEEAREQIAKLLGADPEEIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIEHPAVLNTCRYL-ERQGFEVTYLP  122 (386)
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEecCCcHHHHHHHHhhHHhhhcccCCCeEEEcccccHHHHHHHHHH-HhcCCeEEEeC
Confidence            45889999999999987 45666655 68875 5554  2 1   25789999999999999888666 78899999998


Q ss_pred             CC-----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcC-CCCCCccEEEeccc
Q 024619          126 TC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR-PLELGADIVMHSAT  199 (265)
Q Consensus       126 ~~-----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~-~~~~~~di~~~s~s  199 (265)
                      ++     |+++++++++++|.+|.+-+.||.+|.+.|+++|.++|+++++++++|.+++.|-++. ....+.|++..|.|
T Consensus       123 V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAvQa~Gkipi~~~~~~vD~ls~SaH  202 (386)
T COG1104         123 VDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQAVGKIPIDLEELGVDLLSFSAH  202 (386)
T ss_pred             CCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHHHcCCeEEEehhhhcCceeccccccCcceEEeehh
Confidence            76     8999999999999999999999999999999999999999999999999999998874 44558999999999


Q ss_pred             cccccCCCceeeEEEeechh
Q 024619          200 KFIAGHSDVMAGVLAVKGER  219 (265)
Q Consensus       200 K~~~g~~g~~~G~v~~~~~~  219 (265)
                      |+. ||.|+  |+++.++..
T Consensus       203 K~~-GpkGi--GaLyv~~~~  219 (386)
T COG1104         203 KFG-GPKGI--GALYVRPGV  219 (386)
T ss_pred             hcc-CCCce--EEEEECCCC
Confidence            977 89994  888776543

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=99.83  E-value=5.7e-19  Score=157.20  Aligned_cols=160  Identities=26%  Similarity=0.247  Sum_probs=119.2

Q ss_pred             HHHHHhHhCCCce-EEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHH-hhcCCCCeEEEeecC------CCHHH
Q 024619           61 ESLLAKLDKADRA-LCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLS-RVTPKTGVVVKRVNT------CDLDE  131 (265)
Q Consensus        61 ~~~l~~~~g~~~~-i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~-~~~~~~g~~~~~~~~------~d~~~  131 (265)
                      ++.+++++|.+.. +++++|++++. ++..++++||+|+++.|+|+++...+. ......|.+++.++.      .|+++
T Consensus        77 ~~~la~~~g~~~~~i~~~sgt~al~~~l~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~  156 (416)
T PRK00011         77 IDRAKELFGAEYANVQPHSGSQANAAVYFALLKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDYDE  156 (416)
T ss_pred             HHHHHHHhCCCceeeecCCchHHHHHHHHHhcCCCCEEEEeccccCCccccccccccccceeeEeecCcCcccCCcCHHH
Confidence            4488999998854 66678998885 677789999999999999986532211 112345677777764      37899


Q ss_pred             HHhhcCC-CceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCC-----cCCCCCCccEEEeccccccccC
Q 024619          132 VASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL-----SRPLELGADIVMHSATKFIAGH  205 (265)
Q Consensus       132 l~~~~~~-~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~-----~~~~~~~~di~~~s~sK~~~g~  205 (265)
                      +++.+.+ ++++|+++++.  +|...|+++|.++|+++|+++|+|++|+.|..     ..... +.|++++|+||++.|+
T Consensus       157 l~~~i~~~~~k~v~~~~~~--~~~~~~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~-~~di~~~S~~K~l~g~  233 (416)
T PRK00011        157 VEKLALEHKPKLIIAGASA--YSRPIDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVP-HADVVTTTTHKTLRGP  233 (416)
T ss_pred             HHHHHHhcCCCEEEECCCc--CCCccCHHHHHHHHHHcCCEEEEECcchhcccccCccCCCCC-CCcEEEecCCcCCCCC
Confidence            9998864 78998887554  45678999999999999999999999976654     22334 6799999999998655


Q ss_pred             CCceeeEEEeechhHHHHHHH
Q 024619          206 SDVMAGVLAVKGERLAKELYF  226 (265)
Q Consensus       206 ~g~~~G~v~~~~~~~~~~~~~  226 (265)
                      .   +|+++.+++.+.+.+..
T Consensus       234 ~---gg~i~~~~~~~~~~l~~  251 (416)
T PRK00011        234 R---GGLILTNDEELAKKINS  251 (416)
T ss_pred             C---ceEEEeCCHHHHHHHHH
Confidence            4   68888875555554433

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=99.82  E-value=8.4e-19  Score=155.41  Aligned_cols=159  Identities=26%  Similarity=0.297  Sum_probs=118.9

Q ss_pred             HHHHHHhHhCCCc-eEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHH-hhcCCCCeEEEeec--CC------C
Q 024619           60 LESLLAKLDKADR-ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLS-RVTPKTGVVVKRVN--TC------D  128 (265)
Q Consensus        60 l~~~l~~~~g~~~-~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~-~~~~~~g~~~~~~~--~~------d  128 (265)
                      .++.+++++|.+. .+++++|++|+. ++..++++||+|++++|.|+++...+. ..++..|.++..++  .+      |
T Consensus        70 ~~~~~~~~~g~~~~~v~~~sgt~a~~~~l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id  149 (402)
T cd00378          70 AIERAKKLFGAEYANVQPHSGSQANLAVYFALLEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLID  149 (402)
T ss_pred             HHHHHHHHhCCCceeeecCCcHHHHHHHHHHhcCCCCEEEEecCccCccccccccccccccceeEEEecCCcCcccCCcC
Confidence            5667889999875 456678888885 778889999999999999987753221 11456676655443  22      8


Q ss_pred             HHHHHhhcC-CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCC-----cCCCCCCccEEEecccccc
Q 024619          129 LDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL-----SRPLELGADIVMHSATKFI  202 (265)
Q Consensus       129 ~~~l~~~~~-~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~-----~~~~~~~~di~~~s~sK~~  202 (265)
                      ++++++.+. +++++|++++++||  ...|+++|+++|+++|+++++|++|..+..     ..+.. +.|++++|+||++
T Consensus       150 ~~~l~~~i~~~~~~~v~~~~~~~~--~~~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~-~~dv~~~s~sK~l  226 (402)
T cd00378         150 YDALEKMALEFKPKLIVAGASAYP--RPIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP-GADVVTTTTHKTL  226 (402)
T ss_pred             HHHHHHHHHhCCCCEEEecCcccC--CCcCHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc-CCcEEEeccccCC
Confidence            999999885 68999999888764  567999999999999999999999865543     22233 6799999999998


Q ss_pred             ccCCCceeeEEEeechhHHHHH
Q 024619          203 AGHSDVMAGVLAVKGERLAKEL  224 (265)
Q Consensus       203 ~g~~g~~~G~v~~~~~~~~~~~  224 (265)
                      .|+   ++|+++.+++.+.+.+
T Consensus       227 ~G~---~gg~i~~~~~~~~~~l  245 (402)
T cd00378         227 RGP---RGGLILTRKGELAKKI  245 (402)
T ss_pred             CCC---CceEEEeccHHHHHHH
Confidence            555   4688888774444433

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=99.82  E-value=4.3e-19  Score=154.48  Aligned_cols=164  Identities=22%  Similarity=0.276  Sum_probs=127.9

Q ss_pred             hhHHHHHHHHHhHhCCCc----eEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC--
Q 024619           55 PTRDALESLLAKLDKADR----ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--  127 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~----~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--  127 (265)
                      ...+++++.+++++|.+.    ++++++|++++. ++..++.+||++++..+.+.+..  +...++..|.+++.++.+  
T Consensus        31 ~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~~~~~~vi~~~~~~~~~~--~~~~a~~~g~~~~~i~~~~~  108 (355)
T TIGR03301        31 DVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLVPRDGKLLVLINGAYGER--LAKICEYLGIPHTDLNFSEY  108 (355)
T ss_pred             HHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhccCCCCeEEEECCCchhhH--HHHHHHHcCCceEEEecCCC
Confidence            458999999999999862    335677788886 67777888888775555443321  135556788888887753  


Q ss_pred             ---CHHHHHhhcC--CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEeccccc
Q 024619          128 ---DLDEVASAIG--PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKF  201 (265)
Q Consensus       128 ---d~~~l~~~~~--~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~  201 (265)
                         |++++++.+.  ++++.+++++++|++|.+.|+++|+++|+++|+++++|++++.+..+ +....+.|++++|++|+
T Consensus       109 ~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~livD~~~s~g~~~~~~~~~~~d~~~~s~~K~  188 (355)
T TIGR03301       109 EPPDLNRIEEALAADPDITHVATVHHETTTGILNPLEAIAKVARSHGAVLIVDAMSSFGAIPIDIEELDVDALIASANKC  188 (355)
T ss_pred             CCCCHHHHHHHHHhCCCceEEEEEecCCcccchhHHHHHHHHHHHcCCEEEEEeccccCCcccchhhcCccEEEecCCcc
Confidence               7899999886  35667888999999999999999999999999999999999887654 23355799999999999


Q ss_pred             cccCCCceeeEEEeechhHHH
Q 024619          202 IAGHSDVMAGVLAVKGERLAK  222 (265)
Q Consensus       202 ~~g~~g~~~G~v~~~~~~~~~  222 (265)
                      ++|++|+  |+++++++.+..
T Consensus       189 l~~~~G~--g~~~~~~~~~~~  207 (355)
T TIGR03301       189 LEGVPGF--GFVIARRDLLEA  207 (355)
T ss_pred             cccCCce--eEEEECHHHHHH
Confidence            9888884  899888865533

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>PRK07505 hypothetical protein; Provisional

Probab=99.82  E-value=7.2e-19  Score=155.85  Aligned_cols=210  Identities=18%  Similarity=0.180  Sum_probs=140.5

Q ss_pred             cceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCC--CCChhHHHHHHHHHhHhCCCceEEecchHHHHH-H
Q 024619            9 VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTR--SGNPTRDALESLLAKLDKADRALCFTSGMAALA-A   85 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~--~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~   85 (265)
                      .+..+++|+ +++|+|...+|.+..+...............++  ...+..+++++.++++++. +.+++++|++|.. +
T Consensus        44 ~g~~~ld~~-s~~~lgl~~~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~la~~~~~-~~~~~~sG~~a~~~a  121 (402)
T PRK07505         44 DGHTFVNFV-SCSYLGLDTHPAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEEALSELFGA-SVLTFTSCSAAHLGI  121 (402)
T ss_pred             CCceEEEee-cCCccCCCCCHHHHHHHHHHHHHhCCCCCCccchhhhhHHHHHHHHHHHHHhCC-CEEEECChHHHHHHH
Confidence            356799999 789999666665555432222111101111121  1345689999999999988 7888999987775 3


Q ss_pred             HHHh----cCCCC-EEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHH
Q 024619           86 VTHL----LGTGE-EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRK  160 (265)
Q Consensus        86 ~~~~----~~~g~-~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~  160 (265)
                      +..+    ..+|+ .|++.+..|++.........+ .+.+++.++..|++++++++.++++++++++|+||+|.+.++++
T Consensus       122 i~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~-~~~~v~~~~~~d~~~l~~~~~~~~~~~vl~~p~~~~G~~~~~~~  200 (402)
T PRK07505        122 LPLLASGHLTGGVPPHMVFDKNAHASLNILKGICA-DETEVETIDHNDLDALEDICKTNKTVAYVADGVYSMGGIAPVKE  200 (402)
T ss_pred             HHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhh-cCCeEEEeCCCCHHHHHHHHhcCCCEEEEEecccccCCcCCHHH
Confidence            3222    12232 355666555544322122222 35688889999999999998777889999999999999999999


Q ss_pred             HHHHHHHcCCEEEEeCCcCCCCCc--------CCC---CCCccEEEeccccccccCCCceeeEEEeechhHHHHHH
Q 024619          161 IAEMAHAHGALLLVDNSIMSPVLS--------RPL---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY  225 (265)
Q Consensus       161 i~~~a~~~~~~li~D~~~~~~~~~--------~~~---~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~  225 (265)
                      |.++|+++|+++|+||+|+.+.++        ...   ..+.++++.|++|.++++    +|+++..+..+.+.+.
T Consensus       201 i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~----Gg~~~~~~~~~~~~~~  272 (402)
T PRK07505        201 LLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGAS----GGVIMLGDAEQIELIL  272 (402)
T ss_pred             HHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhcc----CeEEEeCCHHHHHHHH
Confidence            999999999999999998643221        111   123468889999999543    3777655545545443

>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]

Probab=99.81  E-value=3.8e-20  Score=149.79  Aligned_cols=200  Identities=21%  Similarity=0.240  Sum_probs=154.8

Q ss_pred             eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC--CCh-hHHHHHHHHHhHhCCCceEEecchHHHHH-HH
Q 024619           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS--GNP-TRDALESLLAKLDKADRALCFTSGMAALA-AV   86 (265)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~--g~~-~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~   86 (265)
                      -.+++|+ .|||+|++.+|.+......... ....+..-.+.  |.. ..+.++..++++.+.++.+++.++..|.. ++
T Consensus        67 k~ilnFc-aNnYLGLsshPeii~a~~~ale-eyGaGlssvrfIcGtq~iHk~LE~kiAqfh~rED~ilypscfdANag~f  144 (417)
T KOG1359|consen   67 KKILNFC-ANNYLGLSSHPEIINAGQKALE-EYGAGLSSVRFICGTQDIHKLLESKIAQFHGREDTILYPSCFDANAGAF  144 (417)
T ss_pred             cceeeec-ccccccccCChHHHHHHHHHHH-HhCCCccceeEEecchHHHHHHHHHHHHHhCCCceEEeccccccchHHH
Confidence            4689999 9999999999988876533322 11222333333  664 59999999999999999999999997775 77


Q ss_pred             HHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHH-HHhhcCCCceEEEEecCCCCccccccHHHHHHHH
Q 024619           87 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDE-VASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA  165 (265)
Q Consensus        87 ~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~-l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a  165 (265)
                      -+++.|.|.|.-++..|.+..... .++++.    ..+++-|++. +.++.+.+.++|...+..++.|.+.|+++|++++
T Consensus       145 eail~pedAvfSDeLNhASIIdGi-rLckry----~h~dv~~l~~~l~~a~k~r~klv~TDg~FSMDGdiaPl~ei~~La  219 (417)
T KOG1359|consen  145 EAILTPEDAVFSDELNHASIIDGI-RLCKRY----RHVDVFDLEHCLISACKMRLKLVVTDGVFSMDGDIAPLEEISQLA  219 (417)
T ss_pred             HHhcChhhhhhccccccchhhhhh-HHHhhh----ccchhHHHHHHHHHhhhheEEEEEecceeccCCCcccHHHHHHHH
Confidence            788999999999988888887665 445533    3444444443 4445556788999999999999999999999999


Q ss_pred             HHcCCEEEEeCCcCCCCCcCC---------CCCCccEEEeccccccccCCCceeeEEEeechhH
Q 024619          166 HAHGALLLVDNSIMSPVLSRP---------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       166 ~~~~~~li~D~~~~~~~~~~~---------~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                      ++||.++++||+|+.|.++..         ..-++|++..+++|.++|..   +|+..++++.+
T Consensus       220 ~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlGga~---GGyttgp~~li  280 (417)
T KOG1359|consen  220 KKYGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGGAS---GGYTTGPKPLI  280 (417)
T ss_pred             HhcCcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhhcCCC---CCCccCChhHH
Confidence            999999999999998887521         12358999999999997655   69998887654

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=99.81  E-value=2e-18  Score=153.01  Aligned_cols=233  Identities=18%  Similarity=0.148  Sum_probs=151.8

Q ss_pred             cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-H
Q 024619            9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-A   85 (265)
Q Consensus         9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~   85 (265)
                      .+.++++|.++  +..+|...|.+.++..-....    ..+.......+...++++.++++.+.+.+++++||++|+. +
T Consensus        39 ~g~~~lD~~~~~~~~~~Gh~~~~i~~a~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~SGs~A~e~a  114 (401)
T PRK00854         39 DGNRYLDCLSAYSAVNQGHCHPKILAAMVEQAGR----LTLTSRAFRNDQLAPLYEELAALTGSHKVLPMNSGAEAVETA  114 (401)
T ss_pred             CCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhh----ccccccccCCHHHHHHHHHHHhhCCCCEEEEeCCcHHHHHHH
Confidence            34678887632  122566666666555432222    1111111134678899999999999888999999999986 4


Q ss_pred             HHHhcC---------CC-CEEEEcCCCCCChHHHHHhh---------cCCCCeEEEeecCCCHHHHHhhcCCCceEEEEe
Q 024619           86 VTHLLG---------TG-EEIVAGDDLYGGTDRLLSRV---------TPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVE  146 (265)
Q Consensus        86 ~~~~~~---------~g-~~viv~~~~~~~~~~~~~~~---------~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~  146 (265)
                      +..+..         +| ++|++....|++........         .......+..++..|++++++.+.+++++|+++
T Consensus       115 l~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~aii~e  194 (401)
T PRK00854        115 IKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVPFGDAEALEAAITPNTVAFLVE  194 (401)
T ss_pred             HHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEeCCCCHHHHHHHhCCCeEEEEEc
Confidence            444321         23 67888777777754322111         011123456677789999999998899999999


Q ss_pred             cCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CCCCCccEEEeccccccccCCCceeeEEEee
Q 024619          147 SPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVK  216 (265)
Q Consensus       147 ~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~  216 (265)
                      +++||+|.+.+    +++|.++|++||+++|+||+|. .+..+.     ......|+++.  +|++++ +.+++|+++.+
T Consensus       195 ~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~~~~~~g~~~D~~~~--~K~l~g-g~~~ig~v~~~  271 (401)
T PRK00854        195 PIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGIEADVTLI--GKALSG-GFYPVSAVLSN  271 (401)
T ss_pred             cccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHhHHhhcCCCCCEEEe--cccccC-CccCeEEEEEc
Confidence            99999999976    9999999999999999999997 333221     12234687765  699954 44678999887


Q ss_pred             chhHHHHHHHHHHhccCCCChhHHHHHHhccCc
Q 024619          217 GERLAKELYFLQNAEGSGLAPFDCWICLRGVKT  249 (265)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  249 (265)
                      ++.+.. +...........++..++..+..|+.
T Consensus       272 ~~~~~~-l~~~~~~~t~~~~~~~~aa~~a~L~~  303 (401)
T PRK00854        272 SEVLGV-LKPGQHGSTFGGNPLACAVARAALKV  303 (401)
T ss_pred             HHHHhc-ccCCCCCCCCCcCHHHHHHHHHHHHH
Confidence            764432 22222222233466666665555544

>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]

Probab=99.81  E-value=1.8e-19  Score=151.35  Aligned_cols=218  Identities=19%  Similarity=0.207  Sum_probs=156.2

Q ss_pred             eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC--CChh-HHHHHHHHHhHhCCCceEEecchHHHH-HHH
Q 024619           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS--GNPT-RDALESLLAKLDKADRALCFTSGMAAL-AAV   86 (265)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~--g~~~-~~~l~~~l~~~~g~~~~i~~~~g~~al-~~~   86 (265)
                      ..+--+. ||||+|++.+|.+..+.. ........+-+-+|.  |+.. ..+|++.++++++.+..++++|+.-|. +++
T Consensus       171 k~VtVWC-SNDYLgms~Hp~V~~A~~-~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~LHqK~aALlFsSCfVANDstL  248 (570)
T KOG1360|consen  171 KKVTVWC-SNDYLGMSRHPEVLDAMH-DTLDRHGAGAGGTRNISGHSKHHVRLEAELADLHQKEAALLFSSCFVANDSTL  248 (570)
T ss_pred             CceEEEe-cCccccccCChHHHHHHH-HHHHHcCCCcCCccccCCCCchhhhHHHHHHHHhcCcceeeeeeeeeccchHH
Confidence            3455566 899999999998877642 211112233444555  6654 899999999999999999999998666 455


Q ss_pred             HHh--cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcC----CCceEEEEecCCCCccccccHHH
Q 024619           87 THL--LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG----PWTKLVWVESPTNPRQQICDIRK  160 (265)
Q Consensus        87 ~~~--~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~----~~~~~i~~~~~~np~G~~~~l~~  160 (265)
                      ..+  .-||.+|.-++..|.+.+..+    +..+++-..+...|++.+++.+.    .-+|+|-++..++++|.++|+++
T Consensus       249 ftLak~lpgcei~SD~gNHASMI~GI----rns~v~K~IFrHND~~hL~~lL~~~~~svPKivAFEtVhSM~Gavcplee  324 (570)
T KOG1360|consen  249 FTLAKKLPGCEIFSDEGNHASMIQGI----RNSRVPKHIFRHNDLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVCPLEE  324 (570)
T ss_pred             HHHHHHCCCcEEeccccchHHHHHHh----hhcCCcceeeccCCHHHHHHHHHhCCCCCCceEEEeeeeccCCCcCCHHH
Confidence            554  457887777777776665333    45555555566667777776664    34789999999999999999999


Q ss_pred             HHHHHHHcCCEEEEeCCcCCCCCcCC---------CCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHH--
Q 024619          161 IAEMAHAHGALLLVDNSIMSPVLSRP---------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--  229 (265)
Q Consensus       161 i~~~a~~~~~~li~D~~~~~~~~~~~---------~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~--  229 (265)
                      |++++++||++.++||+|+.|.++.-         .-...||+.+++.|.|+.    ++|+|...... .++.+-+..  
T Consensus       325 lcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGc----VGGYIAat~~L-vDmiRSyAaGF  399 (570)
T KOG1360|consen  325 LCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGC----VGGYIAATRKL-VDMIRSYAAGF  399 (570)
T ss_pred             HHHHHHHhCceeeeehhhhhccccCCCCCccccCCcchhhhhcccchhhhccc----ccceehhhhhH-HHHHHHhcCce
Confidence            99999999999999999998888621         122479999999999943    36999766644 454444433  


Q ss_pred             hccCCCChhH
Q 024619          230 AEGSGLAPFD  239 (265)
Q Consensus       230 ~~~~~~~~~~  239 (265)
                      .....++|..
T Consensus       400 IFTTSLPP~v  409 (570)
T KOG1360|consen  400 IFTTSLPPMV  409 (570)
T ss_pred             EEecCCChHH
Confidence            2234455543

>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]

Probab=99.80  E-value=6.9e-18  Score=142.29  Aligned_cols=180  Identities=18%  Similarity=0.273  Sum_probs=140.1

Q ss_pred             CccCCC-CChh-HHHHHHHHHhHhC------CCceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCC
Q 024619           47 YDYTRS-GNPT-RDALESLLAKLDK------ADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (265)
Q Consensus        47 ~~y~~~-g~~~-~~~l~~~l~~~~g------~~~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~  117 (265)
                      ..|.+. |.+. ++++++.+.+..|      ++.++++++++.|.. +...+.+|||.-+++.|-|+++.+   .+.-+.
T Consensus       115 a~fqdy~Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLadpgdafLvPtPyY~gfdr---dl~~rT  191 (471)
T KOG0256|consen  115 AMFQDYHGLPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLADPGDAFLVPTPYYPGFDR---DLRWRT  191 (471)
T ss_pred             hhcccccCchHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhcCCCceeeecCCCCCcccc---cceecc
Confidence            456777 8875 8888888887754      335555555568886 667789999999999999999974   444567


Q ss_pred             CeEEEeecCC-------CHHHHHhhcC------CCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCC
Q 024619          118 GVVVKRVNTC-------DLDEVASAIG------PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSP  181 (265)
Q Consensus       118 g~~~~~~~~~-------d~~~l~~~~~------~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~  181 (265)
                      |++++++...       +++++++++.      .+++.|++.+|+||.|.+.+   +..++.+|.++|+-+|+||+|+..
T Consensus       192 gveivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~s  271 (471)
T KOG0256|consen  192 GVEIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGS  271 (471)
T ss_pred             CceEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhccc
Confidence            8888888643       5788877764      47899999999999999965   678888899999999999999865


Q ss_pred             CCcC------------CC-CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHh
Q 024619          182 VLSR------------PL-ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA  230 (265)
Q Consensus       182 ~~~~------------~~-~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~  230 (265)
                      .+..            +. ..+..-++.|+||-+ |.||+|.|+++..++.+......++..
T Consensus       272 VF~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~-GlpGfRvGviYS~ne~VvsaA~kmssf  332 (471)
T KOG0256|consen  272 VFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDF-GLPGFRVGVIYSNNEDVVSAATKMSSF  332 (471)
T ss_pred             ccCccCceEHHHHhhccccCCCcEEEEEEecccc-CCCceEEEEEEecChHHHHHHHHHhhc
Confidence            5431            11 234557889999999 789999999999998887766555543

>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=1.6e-19  Score=153.59  Aligned_cols=236  Identities=18%  Similarity=0.179  Sum_probs=174.5

Q ss_pred             CCCcceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC--CCh-hHHHHHHHHHhHhCCCceEEecchHHH
Q 024619            6 EPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS--GNP-TRDALESLLAKLDKADRALCFTSGMAA   82 (265)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~--g~~-~~~~l~~~l~~~~g~~~~i~~~~g~~a   82 (265)
                      ..+...+++|++ |++|+|.....-..+......-....-...-++.  |.. ..+++++..+++.|.++.++++.|...
T Consensus       131 ~tG~~~~~lNlg-SYNYLGFa~~~g~ca~~~~~~~~kygl~~css~~e~G~~~~hkelE~l~A~f~g~e~a~vF~mGf~T  209 (519)
T KOG1357|consen  131 YTGTRSRCLNLG-SYNYLGFAQSVGPCAEASLKSFDKYGLSRCSSRHEAGTTEEHKELEELVARFLGVEDAIVFSMGFAT  209 (519)
T ss_pred             eccceeeeeeec-ccccccccccCCcCChHHHHHHHHhcccccccchhcccHHHHHHHHHHHHHhcCCcceEEEeccccc
Confidence            345667899999 9999998876555554322111011112223333  664 599999999999999999999999877


Q ss_pred             HH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcC-------CCc------eEEEEecC
Q 024619           83 LA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG-------PWT------KLVWVESP  148 (265)
Q Consensus        83 l~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~-------~~~------~~i~~~~~  148 (265)
                      .+ .+.+++.||..|+-++..|.+..    .-++..|+.++...++|.+++++.++       +++      -+|+++..
T Consensus       210 Ns~~~p~l~~~gsLIiSDelNHaSi~----~GaRLSgAtiRVfkHNdm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegi  285 (519)
T KOG1357|consen  210 NSMNIPSLLGKGSLIISDELNHASLI----TGARLSGATTRVFRHNDMQGLERLLRDAIVYGQPKTHRPWKKILICVEGI  285 (519)
T ss_pred             cccCcceeecCCcceeeccccchhee----ccccccCceEEEEecCCHHHHHHHHHHHHhcCCCCcCCcchheeeeeccc
Confidence            75 67888999999999998888775    66788999999999888877777764       222      26778999


Q ss_pred             CCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcC----------CCCCCccEEEeccccccccCCCceeeEEEeech
Q 024619          149 TNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR----------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGE  218 (265)
Q Consensus       149 ~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~----------~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~  218 (265)
                      .++-|.+.++.++++++|++.++++.||+|+.|+.+.          +...+.||+++++.|++++.    +|++.++++
T Consensus       286 ysmEg~iv~Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~dvDImMGtftKSfga~----GGyiagsk~  361 (519)
T KOG1357|consen  286 YSMEGTIVDLPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPEDVDIMMGTFTKSFGAA----GGYIAGSKE  361 (519)
T ss_pred             eeccCeecccHHHHHhhccccEEEEeeccccccccCCCCcceeeccCCCchhheeecceehhhcccc----cceecCcHH
Confidence            9999999999999999999999999999999888742          22346799999999999654    588877776


Q ss_pred             hHHHHHHHHH-HhccCCCChhHHHHHHhccCch
Q 024619          219 RLAKELYFLQ-NAEGSGLAPFDCWICLRGVKTM  250 (265)
Q Consensus       219 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~  250 (265)
                      .+........ ......++++.+...+..++.+
T Consensus       362 lid~lrt~s~~~~yat~~sppvaqq~~ssl~~i  394 (519)
T KOG1357|consen  362 LIDYLRTPSPSALYATSLSPPVAQQILTSVKHI  394 (519)
T ss_pred             HHhhhccCCCceeecccCChHHHHHHHHHHHhh
Confidence            5533222222 2344567777777766666543

>TIGR01814 kynureninase kynureninase

Probab=99.79  E-value=1.1e-18  Score=154.93  Aligned_cols=157  Identities=17%  Similarity=0.225  Sum_probs=118.5

Q ss_pred             HHHHHHHHHhHhCCC-c-eEEecchHHHHH-HHHHhcCCC---CEEEEcCCCCCChHHHHHhhcCCCCeEE----EeecC
Q 024619           57 RDALESLLAKLDKAD-R-ALCFTSGMAALA-AVTHLLGTG---EEIVAGDDLYGGTDRLLSRVTPKTGVVV----KRVNT  126 (265)
Q Consensus        57 ~~~l~~~l~~~~g~~-~-~i~~~~g~~al~-~~~~~~~~g---~~viv~~~~~~~~~~~~~~~~~~~g~~~----~~~~~  126 (265)
                      .+++++ + +++|++ + ++++++++++++ ++.++.+++   +.|++++.+|++....|...++..|+++    +.++.
T Consensus        73 ~~~~~~-~-~l~g~~~~~v~~~~~~t~~l~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~  150 (406)
T TIGR01814        73 DESLLK-L-RLVGAKEDEVVVMNTLTINLHLLLASFYKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEP  150 (406)
T ss_pred             hhhhcc-c-cccCCCCCcEEEeCCchHHHHHHHHHhcCCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEecc
Confidence            344444 4 788876 3 444444568886 456666664   3688888999997776655566778776    34443


Q ss_pred             C-----CHHHHHhhc---CCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcC-CCCCCccEEEec
Q 024619          127 C-----DLDEVASAI---GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR-PLELGADIVMHS  197 (265)
Q Consensus       127 ~-----d~~~l~~~~---~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~-~~~~~~di~~~s  197 (265)
                      .     +++++++.+   .+++++|++++++|.||.+.|+++|+++|+++|+++++|++|+.|..+. ....++|++++|
T Consensus       151 ~~~g~~~~~~l~~~~~~~~~~t~lv~~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~~id~~~~gvD~~~~s  230 (406)
T TIGR01814       151 REEETLRLEDILDTIEKNGDDIAVILLSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNVPLDLHDWGVDFACWC  230 (406)
T ss_pred             CCCCccCHHHHHHHHHhcCCCeEEEEEeccccccceecCHHHHHHHHHHcCCEEEEEcccccCCcccccccCCCCEEEEc
Confidence            2     677777766   4789999999999999999999999999999999999999999998763 346789999999


Q ss_pred             cccccccCCCceeeEEEeec
Q 024619          198 ATKFIAGHSDVMAGVLAVKG  217 (265)
Q Consensus       198 ~sK~~~g~~g~~~G~v~~~~  217 (265)
                      .+||++||+|  +|+.+.++
T Consensus       231 ~hK~l~g~pG--~~l~v~~~  248 (406)
T TIGR01814       231 TYKYLNAGPG--AGAFVHEK  248 (406)
T ss_pred             CccccCCCCC--eEEEEehh
Confidence            9999987776  45444443

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=99.79  E-value=3.3e-18  Score=150.44  Aligned_cols=203  Identities=19%  Similarity=0.175  Sum_probs=135.4

Q ss_pred             cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-H
Q 024619            9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-A   85 (265)
Q Consensus         9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~   85 (265)
                      .+.++|+|.++  ++++|..+|.+.++....... .......|   ..+...++++++++++|.+.++++++|++++. +
T Consensus        25 ~g~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~-~~~~~~~~---~~~~~~~l~~~la~~~g~~~~~~~~sg~~a~~~a  100 (379)
T TIGR00707        25 NGKEYLDFVAGIAVNSLGHAHPKLVEALKEQLEK-LVHVSNLY---YTEPQEELAEKLVEHSGADRVFFCNSGAEANEAA  100 (379)
T ss_pred             CCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhh-cccccccc---CCHHHHHHHHHHHhhCCCCEEEEeCCcHHHHHHH
Confidence            35678999843  789998544444443211111 11111112   34679999999999999998888999998875 4


Q ss_pred             HHHh---cC----CCCEEEEcCCCCCChHHHHHhhcCC---------CCeEEEeecCCCHHHHHhhcCCCceEEEEecCC
Q 024619           86 VTHL---LG----TGEEIVAGDDLYGGTDRLLSRVTPK---------TGVVVKRVNTCDLDEVASAIGPWTKLVWVESPT  149 (265)
Q Consensus        86 ~~~~---~~----~g~~viv~~~~~~~~~~~~~~~~~~---------~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~  149 (265)
                      +..+   ..    +|++|++.+|+|+.+..........         ...++..++..|++++++.+.+++++|++++++
T Consensus       101 ~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~p~~  180 (379)
T TIGR00707       101 LKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYAPYNDIESLKKAIDDETAAVIVEPIQ  180 (379)
T ss_pred             HHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChhhhccCCCCCCCceeeCCCCHHHHHHHhhhCeeEEEEEccc
Confidence            4322   22    3799999999998765332111110         011223344458999999998889999998887


Q ss_pred             CCcccc-c---cHHHHHHHHHHcCCEEEEeCCcCC-CCCcC-----CCCCCccEEEeccccccccCCCceeeEEEeechh
Q 024619          150 NPRQQI-C---DIRKIAEMAHAHGALLLVDNSIMS-PVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGER  219 (265)
Q Consensus       150 np~G~~-~---~l~~i~~~a~~~~~~li~D~~~~~-~~~~~-----~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~  219 (265)
                      |++|.. .   ++++|.++|+++|+++|+||+|.. +..+.     ......|++  ++||.+ + +|+|+|+++.+++.
T Consensus       181 ~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~~~~~~~~~~~d~~--t~sK~~-~-~G~riG~~~~~~~~  256 (379)
T TIGR00707       181 GEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFAYEHYGIEPDII--TLAKGL-G-GGVPIGATLAKEEV  256 (379)
T ss_pred             cCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhhHHhcCCCCCEE--EEcccc-c-CCcccEEEEEcHHH
Confidence            777764 2   389999999999999999999962 22111     112234554  689999 4 57899999887643

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>PRK10534 L-threonine aldolase; Provisional

Probab=99.79  E-value=3e-18  Score=148.21  Aligned_cols=202  Identities=18%  Similarity=0.199  Sum_probs=130.7

Q ss_pred             EeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHhcC
Q 024619           13 LMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLG   91 (265)
Q Consensus        13 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~~~   91 (265)
                      +|.|+ +|...+  ++|..........    .....|+  ..+...++++.+++++|.+..+++++|++++. .+..++.
T Consensus         1 ~~~~~-~~~~~~--p~~~~~~a~~~~~----~~~~~Y~--~~~~~~~L~~~la~~~g~~~~~v~~~g~~a~~~~l~~~~~   71 (333)
T PRK10534          1 MIDLR-SDTVTR--PSRAMLEAMMAAP----VGDDVYG--DDPTVNALQDYAAELSGKEAALFLPTGTQANLVALLSHCE   71 (333)
T ss_pred             Ccccc-cccCCC--CCHHHHHHHHhcc----CCCcccC--CCHHHHHHHHHHHHHhCCCeEEEeCchHHHHHHHHHHhcC
Confidence            36777 665555  4444444321111    1233454  34789999999999999998888889987764 6667789


Q ss_pred             CCCEEEEcCCCCCChHHHHHhhcCCC-CeEEEeecCC-----CHHHHHhhcCC------CceEEEEecCCCCccccccH-
Q 024619           92 TGEEIVAGDDLYGGTDRLLSRVTPKT-GVVVKRVNTC-----DLDEVASAIGP------WTKLVWVESPTNPRQQICDI-  158 (265)
Q Consensus        92 ~g~~viv~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~-----d~~~l~~~~~~------~~~~i~~~~~~np~G~~~~l-  158 (265)
                      +||+|+++.|.|......  ...... +++++.++.+     |++++++++.+      ++++|++++|+  +|.+.+. 
T Consensus        72 ~gd~vi~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~--~G~v~~~~  147 (333)
T PRK10534         72 RGEEYIVGQAAHNYLYEA--GGAAVLGSIQPQPIDAAADGTLPLDKVAAKIKPDDIHFARTRLLSLENTH--NGKVLPRE  147 (333)
T ss_pred             CCCeeEEechhhhhHhcC--CchHHhcCceEEeecCCCCCCCCHHHHHHhhcccCcCcccceEEEEecCC--CCeecCHH
Confidence            999999988877532210  001222 3566666532     69999998865      68999999765  5999765 


Q ss_pred             --HHHHHHHHHcCCEEEEeCCcCCCCC---cCCC---CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHh
Q 024619          159 --RKIAEMAHAHGALLLVDNSIMSPVL---SRPL---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA  230 (265)
Q Consensus       159 --~~i~~~a~~~~~~li~D~~~~~~~~---~~~~---~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~  230 (265)
                        ++|+++|+++++++++||+|.....   ....   ....|.++.||||.++.+   .+|+++++++ +.+....+...
T Consensus       148 ~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~---~G~~~~~~~~-~i~~~~~~~~~  223 (333)
T PRK10534        148 YLKQAWEFTRERNLALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTP---VGSLLVGNRD-YIKRARRWRKM  223 (333)
T ss_pred             HHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHHHHhcCCEEEEEeEcCCCCc---ccceEEcCHH-HHHHHHHHHHH
Confidence              5667889999999999999764321   1110   112365566899988543   2446766554 44545444443


Q ss_pred             c
Q 024619          231 E  231 (265)
Q Consensus       231 ~  231 (265)
                      .
T Consensus       224 ~  224 (333)
T PRK10534        224 T  224 (333)
T ss_pred             h
Confidence            3

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=99.79  E-value=3.7e-18  Score=150.72  Aligned_cols=229  Identities=16%  Similarity=0.171  Sum_probs=150.0

Q ss_pred             cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CChhHHHHHHHHHhHhCCCceEEecchHHHHH-
Q 024619            9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLDKADRALCFTSGMAALA-   84 (265)
Q Consensus         9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-   84 (265)
                      .+.++++|.+  ++.++|...|.+.++..-+....    . ..+.. .++...+++++++++.+.+.+++++||++|+. 
T Consensus        29 dG~~~lD~~~g~~~~~lGh~~p~v~~a~~~~~~~~----~-~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sGseA~~~  103 (389)
T PRK01278         29 DGERYLDFASGIAVNSLGHAHPHLVEALKEQAEKL----W-HVSNLYRIPEQERLAERLVENSFADKVFFTNSGAEAVEC  103 (389)
T ss_pred             CCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhc----C-ccccccCChHHHHHHHHHHhhCCCCEEEEcCCcHHHHHH
Confidence            4568999974  26789996665555543222211    1 11112 35678899999999887778899999999985 


Q ss_pred             HHHHh----cCCCC----EEEEcCCCCCChHHHHHhhcCCC----C-----eEEEeecCCCHHHHHhhcCCCceEEEEec
Q 024619           85 AVTHL----LGTGE----EIVAGDDLYGGTDRLLSRVTPKT----G-----VVVKRVNTCDLDEVASAIGPWTKLVWVES  147 (265)
Q Consensus        85 ~~~~~----~~~g~----~viv~~~~~~~~~~~~~~~~~~~----g-----~~~~~~~~~d~~~l~~~~~~~~~~i~~~~  147 (265)
                      ++..+    .++||    +|++.++.|+++...+.......    +     ..+..++..|++++++.+.+++++|++++
T Consensus       104 al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~avivep  183 (389)
T PRK01278        104 AIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGDIEALKAAITPNTAAILIEP  183 (389)
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCCCHHHHHHhhCCCeEEEEEec
Confidence            44433    35565    89999999998865432211110    0     01223455689999999988899999999


Q ss_pred             CCCCccccc----cHHHHHHHHHHcCCEEEEeCCcCC-CCCcC-----CCCCCccEEEeccccccccCCCceeeEEEeec
Q 024619          148 PTNPRQQIC----DIRKIAEMAHAHGALLLVDNSIMS-PVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKG  217 (265)
Q Consensus       148 ~~np~G~~~----~l~~i~~~a~~~~~~li~D~~~~~-~~~~~-----~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~  217 (265)
                      ++|++|...    .+++|.++|++||+++|+||+|.. +..+.     ......|+  .+++|.++  +|++.|++++++
T Consensus       184 ~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi--~t~sK~l~--~G~~ig~~~~~~  259 (389)
T PRK01278        184 IQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPDI--MAVAKGIG--GGFPLGACLATE  259 (389)
T ss_pred             ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcceeecccCCCCCE--EEEehhcc--CCcceEEEEEcH
Confidence            999988442    589999999999999999999972 22121     11233565  47899995  468999998877


Q ss_pred             hhHHHHHHHHHHhccCCCChhHHHHHHhcc
Q 024619          218 ERLAKELYFLQNAEGSGLAPFDCWICLRGV  247 (265)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  247 (265)
                      +.. +.+...........++..++.++..|
T Consensus       260 ~~~-~~~~~~~~~~t~~~~~~~~aaa~a~l  288 (389)
T PRK01278        260 EAA-KGMTPGTHGSTYGGNPLAMAVGNAVL  288 (389)
T ss_pred             HHH-hccCCCCCCCCCCccHHHHHHHHHHH
Confidence            543 32222222233345565555544433

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=99.79  E-value=3.2e-19  Score=154.87  Aligned_cols=164  Identities=18%  Similarity=0.137  Sum_probs=124.8

Q ss_pred             CccCCC-CCh-hHHHHHHHHHhHhCCC----ceEEecchHHHHH-HHHHhcC------------C--CCEEEEcCCCCCC
Q 024619           47 YDYTRS-GNP-TRDALESLLAKLDKAD----RALCFTSGMAALA-AVTHLLG------------T--GEEIVAGDDLYGG  105 (265)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~~l~~~~g~~----~~i~~~~g~~al~-~~~~~~~------------~--g~~viv~~~~~~~  105 (265)
                      ..|... +.. ..+++.+++++++|.+    ..+++++|++++. ++..+..            +  ++.|++++++|.+
T Consensus        28 ~~y~~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~  107 (345)
T cd06450          28 FTWDESPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVS  107 (345)
T ss_pred             cccccCchhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhH
Confidence            346665 444 4788899999999875    5777777788875 4544431            2  3478888889988


Q ss_pred             hHHHHHhhcCCCCeEEEeecC-----CCHHHHHhhcCC------CceEEEEecCCCCccccccHHHHHHHHHHcCCEEEE
Q 024619          106 TDRLLSRVTPKTGVVVKRVNT-----CDLDEVASAIGP------WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV  174 (265)
Q Consensus       106 ~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~~~~------~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~  174 (265)
                      +...+    +..|.+++.++.     .|++++++++.+      ++++|++++++||+|.+.|+++|+++|+++|+++++
T Consensus       108 ~~~~~----~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~l~v  183 (345)
T cd06450         108 VEKAA----AYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHV  183 (345)
T ss_pred             HHHHH----HHHhcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCCeEEE
Confidence            76433    445778887764     379999998876      788899999999999999999999999999999999


Q ss_pred             eCCcCCCCCcCCC-------CCCccEEEeccccccccCCCceeeEEEee
Q 024619          175 DNSIMSPVLSRPL-------ELGADIVMHSATKFIAGHSDVMAGVLAVK  216 (265)
Q Consensus       175 D~~~~~~~~~~~~-------~~~~di~~~s~sK~~~g~~g~~~G~v~~~  216 (265)
                      |++|+.+......       ..+.|++..|+||++++|.|  +|+++.+
T Consensus       184 D~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g--~g~~~~~  230 (345)
T cd06450         184 DAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLG--CSAVLVR  230 (345)
T ss_pred             echhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCcc--hHHHHHH
Confidence            9999877653111       12589999999999877765  5777655

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=99.78  E-value=3.2e-18  Score=151.52  Aligned_cols=230  Identities=20%  Similarity=0.180  Sum_probs=146.6

Q ss_pred             cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCC---ceEEecchHHHH
Q 024619            9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD---RALCFTSGMAAL   83 (265)
Q Consensus         9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~---~~i~~~~g~~al   83 (265)
                      .+.++++|.++  +.++|...|.+.++.. ............|   ..+...+++++++++++.+   .++++++|++|+
T Consensus        41 dg~~~lD~~s~~~~~~lG~~~p~v~~ai~-~~~~~~~~~~~~~---~~~~~~~la~~l~~~~~~~~~~~v~~~~sgsea~  116 (398)
T PRK03244         41 DGKEYLDLLGGIAVNALGHAHPAVVEAVT-RQLATLGHVSNLF---ATEPQIALAERLVELLGAPEGGRVFFCNSGAEAN  116 (398)
T ss_pred             CCCEEEECCcCHhhccCCCCCHHHHHHHH-HHHHhccCccCcc---CCHHHHHHHHHHHHhCCCCCCCEEEEeCchHHHH
Confidence            35678999742  7789985444443322 2111111111122   3455679999999998753   577778888998


Q ss_pred             H-HHHHhcCCC-CEEEEcCCCCCChHHHHHhhc---------CCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCc
Q 024619           84 A-AVTHLLGTG-EEIVAGDDLYGGTDRLLSRVT---------PKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPR  152 (265)
Q Consensus        84 ~-~~~~~~~~g-~~viv~~~~~~~~~~~~~~~~---------~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~  152 (265)
                      . ++..+..+| +.|+..+++|+.+........         ...+.++..++..|++++++.+.+++++|++++++||+
T Consensus       117 ~~al~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~aviiep~~~~~  196 (398)
T PRK03244        117 EAAFKLARLTGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPYGDVDALAAAVDDDTAAVFLEPIQGEA  196 (398)
T ss_pred             HHHHHHHHHHCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCCCCHHHHHHhhcCCeEEEEEecccCCC
Confidence            6 555444455 567777788987753321111         11123455666678999999887789999999999999


Q ss_pred             ccccc----HHHHHHHHHHcCCEEEEeCCcCC-CCCc-----CCCCCCccEEEeccccccccCCCceeeEEEeechhHHH
Q 024619          153 QQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK  222 (265)
Q Consensus       153 G~~~~----l~~i~~~a~~~~~~li~D~~~~~-~~~~-----~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~  222 (265)
                      |.+.|    +++|.++|++||+++|+||+|.. |..+     .......|++  +++|+++  +|++.|+++.+++ +.+
T Consensus       197 G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pDi~--t~sK~l~--~G~~ig~~~~~~~-~~~  271 (398)
T PRK03244        197 GVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVTPDVV--TLAKGLG--GGLPIGACLAFGP-AAD  271 (398)
T ss_pred             CCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHHhhhhhCCCCCEE--EEchhhh--CCcccEEEEEcHH-HHh
Confidence            99976    89999999999999999999852 2111     1123346765  7799995  4688999988876 333


Q ss_pred             HHHHHHHhccCCCChhHHHHHHhcc
Q 024619          223 ELYFLQNAEGSGLAPFDCWICLRGV  247 (265)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~l  247 (265)
                      .+...........++..+....+.|
T Consensus       272 ~~~~~~~~~t~~~~~~~~aaa~a~l  296 (398)
T PRK03244        272 LLTPGLHGSTFGGNPVACAAALAVL  296 (398)
T ss_pred             hccCCCCcCCCCCCHHHHHHHHHHH
Confidence            3322112223344555555544443

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=99.78  E-value=6.4e-18  Score=145.14  Aligned_cols=162  Identities=23%  Similarity=0.272  Sum_probs=138.0

Q ss_pred             hhHHHHHHHHHhHhCCC--ceEEe-cchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC---
Q 024619           55 PTRDALESLLAKLDKAD--RALCF-TSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~--~~i~~-~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---  127 (265)
                      ....++.+.+...++++  +++++ ++|+.++. ++.++++|||+|++......+  ..|.+.++++|.+++.+...   
T Consensus        38 ~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~~pgdkVLv~~nG~FG--~R~~~ia~~~g~~v~~~~~~wg~  115 (383)
T COG0075          38 GIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLVEPGDKVLVVVNGKFG--ERFAEIAERYGAEVVVLEVEWGE  115 (383)
T ss_pred             HHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCChHH--HHHHHHHHHhCCceEEEeCCCCC
Confidence            45888889999999987  44444 56778885 888999999999986665433  34678999999999988754   


Q ss_pred             --CHHHHHhhcC--CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEecccccc
Q 024619          128 --DLDEVASAIG--PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI  202 (265)
Q Consensus       128 --d~~~l~~~~~--~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~~  202 (265)
                        |+++++++++  ++.++|.+.|...+||.+.|+++|+++|++||.++|+|.+-+.|... ...++++|+++.+..|++
T Consensus       116 ~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~~I~~~~k~~g~l~iVDaVsS~Gg~~~~vd~wgiDv~itgSQK~l  195 (383)
T COG0075         116 AVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDAVSSLGGEPLKVDEWGIDVAITGSQKAL  195 (383)
T ss_pred             CCCHHHHHHHHhcCCCccEEEEEeccCcccccCcHHHHHHHHHHcCCEEEEEecccCCCcccchhhcCccEEEecCchhc
Confidence              8999999998  46889999999999999999999999999999999999999988775 667889999999999999


Q ss_pred             ccCCCceeeEEEeechhH
Q 024619          203 AGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       203 ~g~~g~~~G~v~~~~~~~  220 (265)
                      ++|||+  |++..+++.+
T Consensus       196 ~~PPGl--a~v~~S~~a~  211 (383)
T COG0075         196 GAPPGL--AFVAVSERAL  211 (383)
T ss_pred             cCCCcc--ceeEECHHHH
Confidence            999996  8888887554

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=99.78  E-value=6.6e-18  Score=152.47  Aligned_cols=163  Identities=23%  Similarity=0.336  Sum_probs=126.6

Q ss_pred             CCh-hHHHHHHHHHhHhCCCceEEe-cchHHH-HHH---HH-HhcCCCC----EEEEcCCCCCChHHHHHhhcCCCCeEE
Q 024619           53 GNP-TRDALESLLAKLDKADRALCF-TSGMAA-LAA---VT-HLLGTGE----EIVAGDDLYGGTDRLLSRVTPKTGVVV  121 (265)
Q Consensus        53 g~~-~~~~l~~~l~~~~g~~~~i~~-~~g~~a-l~~---~~-~~~~~g~----~viv~~~~~~~~~~~~~~~~~~~g~~~  121 (265)
                      |.. .+.++++++++++|.++..+. ++|+.+ +..   +. .+.++||    +|+++++.|+++..    .++..|+++
T Consensus       110 G~lel~~~~~~~la~l~G~~~~~l~~~~GA~a~~~~l~~~r~~~~~~Gd~~~~~Vlv~~~~hp~~~~----~~~~~G~~v  185 (481)
T PRK04366        110 GALELMYELQEWLKEITGMDAVTLQPAAGAHGELTGLLMIRAYHEARGDTKRTEVIVPDSAHGTNPA----SAAMAGFKV  185 (481)
T ss_pred             HHHHHHHHHHHHHHHHhCCCceEEEeCcHHHHHHHHHHHHHHHhhccCcCCCCEEEEcCCccHhHHH----HHHHcCCEE
Confidence            555 489999999999999864444 556543 322   22 2356666    99999999999974    456689999


Q ss_pred             EeecC-----CCHHHHHhhcCCCceEEEEecCCCCcccc-ccHHHHHHHHHHcCCEEEEeCCcCCCCC--cCCCCCCccE
Q 024619          122 KRVNT-----CDLDEVASAIGPWTKLVWVESPTNPRQQI-CDIRKIAEMAHAHGALLLVDNSIMSPVL--SRPLELGADI  193 (265)
Q Consensus       122 ~~~~~-----~d~~~l~~~~~~~~~~i~~~~~~np~G~~-~~l~~i~~~a~~~~~~li~D~~~~~~~~--~~~~~~~~di  193 (265)
                      +.++.     .|++++++++.+++++|++++|+ ++|.+ .|+++|+++|+++|+++++|+++..+..  ..+.+.++|+
T Consensus       186 v~v~~~~~~~~D~e~L~~~i~~~t~~V~v~~Pn-~tG~~~~dl~eI~~~a~~~gal~iVD~a~~~~~~g~~~~~~~GaD~  264 (481)
T PRK04366        186 VEIPSNEDGLVDLEALKAAVGEDTAALMLTNPN-TLGLFERNILEIAEIVHEAGGLLYYDGANLNAILGKARPGDMGFDV  264 (481)
T ss_pred             EEeecCCCCCcCHHHHHhhcccCCeEEEEeCCC-CccccchHHHHHHHHHHHcCCEEEEEecChhhhcccCCccccCCCE
Confidence            98875     37899999998899999999986 89987 5899999999999999999999975432  2567889999


Q ss_pred             EEeccccccccCCCc---eeeEEEeechhH
Q 024619          194 VMHSATKFIAGHSDV---MAGVLAVKGERL  220 (265)
Q Consensus       194 ~~~s~sK~~~g~~g~---~~G~v~~~~~~~  220 (265)
                      +++|.+||+++|.|.   -.|+++++++..
T Consensus       265 ~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~  294 (481)
T PRK04366        265 VHLNLHKTFSTPHGGGGPGSGPVGVKEELA  294 (481)
T ss_pred             EEEechhhcCCCCCCCCCCeeeeeehhhhH
Confidence            999999999755332   147887776543

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=99.78  E-value=9e-18  Score=148.58  Aligned_cols=170  Identities=19%  Similarity=0.178  Sum_probs=131.0

Q ss_pred             CCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEee
Q 024619           46 PYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV  124 (265)
Q Consensus        46 ~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~  124 (265)
                      ...|+..  +...++++.+++++|.+.++++++|++|+. +++.+++|||.| +++|.|..+.    ......|.+++.+
T Consensus        46 d~~Y~~~--~g~~~Leeaia~~~g~~~vv~t~~Gt~Al~la~~al~~pGD~V-~~~~~f~~~~----~~i~~~Ga~pv~v  118 (431)
T cd00617          46 DEAYAGS--KSFYDLEDAVQDLFGFKHIIPTHQGRGAENILFSILLKPGRTV-PSNMHFDTTR----GHIEANGAVPVDL  118 (431)
T ss_pred             CCccCCC--CCHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHHHhCCCCCEE-ccCCcccchH----HHHHhCCCEeEEE
Confidence            3446555  446788888999999999999999999986 777889999987 6889998886    4557788888887


Q ss_pred             cC---------------CCHHHHHhhcCCC----ceEEEEecCCCCc-ccccc---HHHHHHHHHHcCCEEEEeCCcCCC
Q 024619          125 NT---------------CDLDEVASAIGPW----TKLVWVESPTNPR-QQICD---IRKIAEMAHAHGALLLVDNSIMSP  181 (265)
Q Consensus       125 ~~---------------~d~~~l~~~~~~~----~~~i~~~~~~np~-G~~~~---l~~i~~~a~~~~~~li~D~~~~~~  181 (265)
                      ++               .|++++++++.++    +++|+++.|+||+ |...+   +++|.++|++||++||+|+++...
T Consensus       119 ~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~  198 (431)
T cd00617         119 VIDEAHDAQELIPFKGNIDVAKLEKLIDEVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAE  198 (431)
T ss_pred             ecccccccccccCCCCCcCHHHHHHHhCcccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHh
Confidence            65               3789999999754    7899999999998 88865   578899999999999999996532


Q ss_pred             -----------CCcCCC-------CCCccEEEeccccccccCCCceeeEEEeechhHHHHHH
Q 024619          182 -----------VLSRPL-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY  225 (265)
Q Consensus       182 -----------~~~~~~-------~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~  225 (265)
                                 ......       ....|.+..|++|...++.   +|+++++++.+.+..+
T Consensus       199 na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~~~---GG~i~~~d~~l~~~~~  257 (431)
T cd00617         199 NAYFIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLVNI---GGFLALRDDELYEEAR  257 (431)
T ss_pred             hhhhhhcccccccCCCHHHHHHHhhccCCEEEEEeecCCCCcc---ceEEEeCcHHHHHHHH
Confidence                       111111       1136788888888776553   6899998865655444

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=99.77  E-value=4.6e-18  Score=151.13  Aligned_cols=203  Identities=18%  Similarity=0.185  Sum_probs=138.9

Q ss_pred             cceeEeeccCCCCC--CCCCCCCeeeccccccCCCCCCCCCccCCC--CChhHHHHHHHHHhHhC--CCceEEecchHHH
Q 024619            9 VSTLLMNFSNEFDP--YGALSTPLYQTATFKQPSATENGPYDYTRS--GNPTRDALESLLAKLDK--ADRALCFTSGMAA   82 (265)
Q Consensus         9 ~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~--g~~~~~~l~~~l~~~~g--~~~~i~~~~g~~a   82 (265)
                      .+.++|+|.+++++  +|..+|.+.++..-...     ....|...  ..+...++++.++++++  .+.++++++|++|
T Consensus        34 dG~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgsea  108 (413)
T cd00610          34 DGNRYLDFLSGIGVLNLGHNHPEVVEALKEQLA-----KLTHFSLGFFYNEPAVELAELLLALTPEGLDKVFFVNSGTEA  108 (413)
T ss_pred             CCCEEEEcCccHHhhccCCCCHHHHHHHHHHHH-----hCcCccCcccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHH
Confidence            35689999855554  77655544444332221     12233332  24679999999999998  6678888889999


Q ss_pred             HH-HHHHh--cCCCCEEEEcCCCCCChHHHHHhhcCC---------CCeEEEeecCC-----------CHHHHHhhcCC-
Q 024619           83 LA-AVTHL--LGTGEEIVAGDDLYGGTDRLLSRVTPK---------TGVVVKRVNTC-----------DLDEVASAIGP-  138 (265)
Q Consensus        83 l~-~~~~~--~~~g~~viv~~~~~~~~~~~~~~~~~~---------~g~~~~~~~~~-----------d~~~l~~~~~~-  138 (265)
                      +. ++..+  ..+++.|++.++.|++...........         ...+++.++.+           |++++++.+.+ 
T Consensus       109 ~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~  188 (413)
T cd00610         109 VEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEH  188 (413)
T ss_pred             HHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcC
Confidence            86 44444  367899999999999876443222211         12345666665           78889888865 


Q ss_pred             --CceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCC-CCcC-----CCCCCccEEEeccccccccCC
Q 024619          139 --WTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSP-VLSR-----PLELGADIVMHSATKFIAGHS  206 (265)
Q Consensus       139 --~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~~~-~~~~-----~~~~~~di~~~s~sK~~~g~~  206 (265)
                        ++++|++++.++++|.+.+    +++|.++|++||+++|+||+|+.. ..+.     ......|+  .|++|++++  
T Consensus       189 ~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~~~~~~~~~~d~--~t~sK~l~~--  264 (413)
T cd00610         189 PEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHFGVEPDI--VTLGKGLGG--  264 (413)
T ss_pred             CCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhhHhhcCCCCCe--EEEcccccC--
Confidence              5778888888888899876    999999999999999999999732 1211     11223455  478899954  


Q ss_pred             CceeeEEEeechhH
Q 024619          207 DVMAGVLAVKGERL  220 (265)
Q Consensus       207 g~~~G~v~~~~~~~  220 (265)
                      |+++|+++.+++.+
T Consensus       265 g~~~g~~~~~~~~~  278 (413)
T cd00610         265 GLPLGAVLGREEIM  278 (413)
T ss_pred             ccccEEEEEcHHHH
Confidence            58899998765433

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=99.76  E-value=2.8e-17  Score=145.39  Aligned_cols=231  Identities=16%  Similarity=0.148  Sum_probs=150.1

Q ss_pred             cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CChhHHHHHHHHHhHhCCCceEEecchHHHHH-
Q 024619            9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLDKADRALCFTSGMAALA-   84 (265)
Q Consensus         9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-   84 (265)
                      .+.++++|.++  +..+|...|.+.++..-+...    ..+ +++. .++...+++++++++.+.+.+++++||++|+. 
T Consensus        38 ~G~~~lD~~~g~~~~~lGh~~p~v~~ai~~~~~~----~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~SGseA~e~  112 (396)
T PRK04073         38 EGNRYMDMLSAYSAVNQGHRHPKIIQALKDQADK----VTL-TSRAFHSDQLGPWYEKVAKLTGKDMVLPMNTGAEAVET  112 (396)
T ss_pred             CCCEEEEcCCCHHhccCCCCCHHHHHHHHHHHhh----ccc-cccccCCHHHHHHHHHHHhcCCCCeEEEcCChHHHHHH
Confidence            34678888532  334888887777775433222    111 1222 44668889999999988888999999999986 


Q ss_pred             HHHHhc---------CCC-CEEEEcCCCCCChHHHHHhhcCCCC---------eEEEeecCCCHHHHHhhcCCCceEEEE
Q 024619           85 AVTHLL---------GTG-EEIVAGDDLYGGTDRLLSRVTPKTG---------VVVKRVNTCDLDEVASAIGPWTKLVWV  145 (265)
Q Consensus        85 ~~~~~~---------~~g-~~viv~~~~~~~~~~~~~~~~~~~g---------~~~~~~~~~d~~~l~~~~~~~~~~i~~  145 (265)
                      ++....         .+| ++|+..+.+|++............+         ..+..++..|++++++.+.+++++|++
T Consensus       113 Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~vii  192 (396)
T PRK04073        113 AIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPYGDLEALKAAITPNTAAFLV  192 (396)
T ss_pred             HHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeCCCCHHHHHHhcccCeEEEEE
Confidence            433321         134 6788887777766432212111100         113456667899999999888999999


Q ss_pred             ecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCc-----CCCCCCccEEEeccccccccCCCceeeEEEe
Q 024619          146 ESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVLAV  215 (265)
Q Consensus       146 ~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~-----~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~  215 (265)
                      ++++||+|.+.+    +++|.++|+++|+++|+||+|. .+..+     .......|++  +++|.+ |.+|+++|++++
T Consensus       193 ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~pdi~--~~sK~l-g~gg~~ig~~~~  269 (396)
T PRK04073        193 EPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDNVTPDMY--ILGKAL-GGGVFPISCVAA  269 (396)
T ss_pred             cCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHHHhhhcCCCCCEE--Eecccc-cCCCCcceEEEE
Confidence            999999999865    8999999999999999999997 22211     1123346766  468999 456788999988


Q ss_pred             echhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619          216 KGERLAKELYFLQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      +++.+ +.+...........++..++..+..|+
T Consensus       270 ~~~i~-~~~~~~~~~~t~~~~~~~~aaa~aaL~  301 (396)
T PRK04073        270 NRDIL-GVFTPGSHGSTFGGNPLACAVSIAALE  301 (396)
T ss_pred             cHHHH-hhhcCCCCCCCCCCCHHHHHHHHHHHH
Confidence            76543 333222222233445555555444444

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=99.76  E-value=1.1e-17  Score=147.89  Aligned_cols=231  Identities=17%  Similarity=0.169  Sum_probs=147.1

Q ss_pred             cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-H
Q 024619            9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-A   85 (265)
Q Consensus         9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~   85 (265)
                      .+.++++|.++  +.++|+..|.+.++..-....    ..........+.+.+++++++++.|.+.++++++|++|+. +
T Consensus        37 dg~~~iD~~~g~~~~~lG~~~p~v~~a~~~~~~~----~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~gg~eA~~~a  112 (396)
T PRK02627         37 DGKEYLDFLAGIAVNNLGHCHPKLVEAIQEQAAK----LIHTSNLYYIEPQEELAEKLVELSGMDKVFFCNSGAEANEAA  112 (396)
T ss_pred             CCCEEEECCccHHhccCCCCCHHHHHHHHHHHhh----ccccccccCCHHHHHHHHHHHhhcCCCEEEECCCcHHHHHHH
Confidence            34678888742  667888555554443322211    1111111135779999999999999888888888999986 4


Q ss_pred             HHHhcCCC-------CEEEEcCCCCCChHHHHHhhcCCC---------CeEEEeecCCCHHHHHhhcCCCceEEEEecCC
Q 024619           86 VTHLLGTG-------EEIVAGDDLYGGTDRLLSRVTPKT---------GVVVKRVNTCDLDEVASAIGPWTKLVWVESPT  149 (265)
Q Consensus        86 ~~~~~~~g-------~~viv~~~~~~~~~~~~~~~~~~~---------g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~  149 (265)
                      +..+...+       ++|++.++.|+.+...........         ...+..++..|++++++.+.+++++|++++++
T Consensus       113 l~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~vii~p~~  192 (396)
T PRK02627        113 IKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEGFEPLVEGFIYVPFNDIEALKAAITDKTAAVMLEPIQ  192 (396)
T ss_pred             HHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccccCCCCCCCceEeCCCCHHHHHHhcCCCeEEEEEeccc
Confidence            54443222       679999999987753321111100         01123445558999999998889999999999


Q ss_pred             CCccc-cc---cHHHHHHHHHHcCCEEEEeCCcCC-CCCcC-----CCCCCccEEEeccccccccCCCceeeEEEeechh
Q 024619          150 NPRQQ-IC---DIRKIAEMAHAHGALLLVDNSIMS-PVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGER  219 (265)
Q Consensus       150 np~G~-~~---~l~~i~~~a~~~~~~li~D~~~~~-~~~~~-----~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~  219 (265)
                      ||+|. ..   .+++|.++|++||+++|+||+|.. +..+.     ......|++  ++||.++  +|++.|+++++++ 
T Consensus       193 ~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~~~~~~~~~~pdi~--t~sK~~~--~G~rig~~~~~~~-  267 (396)
T PRK02627        193 GEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQHYGIEPDIM--TLAKGLG--GGVPIGAVLAKEK-  267 (396)
T ss_pred             CCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCceeeehhcCCCCCEE--EEcchhh--CCcccEEEEEcHH-
Confidence            99994 43   389999999999999999999872 22111     112235654  6899994  5799999998765 


Q ss_pred             HHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619          220 LAKELYFLQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      +.+.+...........++..+..+.+.++
T Consensus       268 ~~~~~~~~~~~~t~~~~~~~~~aa~~~l~  296 (396)
T PRK02627        268 VADVFTPGDHGSTFGGNPLACAAALAVIE  296 (396)
T ss_pred             HHhccCCCCCCCCCCCCHHHHHHHHHHHH
Confidence            33333222222334455555555444443

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=99.75  E-value=2.3e-17  Score=148.26  Aligned_cols=160  Identities=25%  Similarity=0.329  Sum_probs=126.1

Q ss_pred             HHHHHHHHHhHhCCC-ceE-EecchHHHHH-HHHHh-cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC----C
Q 024619           57 RDALESLLAKLDKAD-RAL-CFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----D  128 (265)
Q Consensus        57 ~~~l~~~l~~~~g~~-~~i-~~~~g~~al~-~~~~~-~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----d  128 (265)
                      ..++.+.+++++|.+ +.+ ++++|++++. +++++ .++||+|+++++.|+++...+...++..|++++.++.+    |
T Consensus       114 ~~e~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~d  193 (447)
T PRK00451        114 IFEYQTMICELTGMDVANASMYDGATALAEAALMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYEDGVTD  193 (447)
T ss_pred             HHHHHHHHHHHhCCCcceEEecCcHHHHHHHHHHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCCCCCCC
Confidence            444557779999987 344 5555567775 55565 47899999999999999877766667789999998875    8


Q ss_pred             HHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEE--eCCcCCCCCcCCCCCCccEEEeccccc-----
Q 024619          129 LDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV--DNSIMSPVLSRPLELGADIVMHSATKF-----  201 (265)
Q Consensus       129 ~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~--D~~~~~~~~~~~~~~~~di~~~s~sK~-----  201 (265)
                      ++++++++.+++++|++++| |+||.+.|+++|.++|+++|+++++  |. .+.+....+...++|++++|.+||     
T Consensus       194 ~~~l~~~i~~~t~~v~l~~p-n~tG~v~~l~~I~~~a~~~~~~~iv~~d~-~~~g~~~~~~~~~~D~~~~s~~k~~~~~~  271 (447)
T PRK00451        194 LEALEAAVDDDTAAVVVQYP-NFFGVIEDLEEIAEIAHAGGALFIVGVDP-VSLGLLKPPGEYGADIVVGEGQPLGIPLS  271 (447)
T ss_pred             HHHHHHhcCCCeEEEEEECC-CCCCeeCCHHHHHHHHHHCCCEEEEEcCh-HHhccCCCcccCCCCEEEECCCcCCCCCC
Confidence            99999999989999999999 8999999999999999999999988  43 355655556778999999987775     


Q ss_pred             cccCCCceeeEEEeechhHH
Q 024619          202 IAGHSDVMAGVLAVKGERLA  221 (265)
Q Consensus       202 ~~g~~g~~~G~v~~~~~~~~  221 (265)
                      ++|| |  .|+++.+++.+.
T Consensus       272 ~~Gp-g--~G~l~~~~~~~~  288 (447)
T PRK00451        272 FGGP-Y--LGFFATRKKLVR  288 (447)
T ss_pred             CCCC-C--chHHHhhHHHHh
Confidence            4343 3  688887775543

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=99.75  E-value=1.1e-16  Score=141.60  Aligned_cols=165  Identities=15%  Similarity=0.129  Sum_probs=125.6

Q ss_pred             hHHHHHHHHHhHhCCC---ceEEecchH-HHHHHHHHhcC----CCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC-
Q 024619           56 TRDALESLLAKLDKAD---RALCFTSGM-AALAAVTHLLG----TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-  126 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~---~~i~~~~g~-~al~~~~~~~~----~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~-  126 (265)
                      +.+++++.+++++|.+   ..+++++|+ .++.+.+..++    +||+|+++...|.+..    ..+...|++++.++. 
T Consensus       106 l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~----kAi~~~G~~pv~Vd~~  181 (444)
T TIGR03531       106 LTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCI----KAISTAGFEPRVIETV  181 (444)
T ss_pred             HHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHH----HHHHHcCCeEEEeeee
Confidence            4778899999999988   688999998 67764444443    5899999998877775    666888999999984 


Q ss_pred             -------CCHHHHHhhcCC---CceEEEEecCC-CCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc------CCCCC
Q 024619          127 -------CDLDEVASAIGP---WTKLVWVESPT-NPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS------RPLEL  189 (265)
Q Consensus       127 -------~d~~~l~~~~~~---~~~~i~~~~~~-np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~------~~~~~  189 (265)
                             .|++++++++.+   +..++++..++ ...|...|+++|.++|++||+++|+|++|+.+...      .....
T Consensus       182 ~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~~~~~~~~g~~~  261 (444)
T TIGR03531       182 LDGDELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSNKYMELINKAIKV  261 (444)
T ss_pred             ecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcChhhhhhhhccccc
Confidence                   189999999975   45566666554 44567889999999999999999999999965432      12223


Q ss_pred             C-ccEEEeccccccccCCCceeeEEEeechhHHHHHHH
Q 024619          190 G-ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF  226 (265)
Q Consensus       190 ~-~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~  226 (265)
                      + .|++++|++|++..|.+  +|+++.+++.+.+....
T Consensus       262 Grad~vv~s~hK~l~~pg~--Gg~I~~~d~el~~~i~~  297 (444)
T TIGR03531       262 GRVDAVVSSTDKNFMVPVG--GAIIYSFDENFIQEISK  297 (444)
T ss_pred             cCCCeEEEeCccCCCCCCC--EEEEEECCHHHHHHHHH
Confidence            3 59999999999976654  68887877666554443

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=99.74  E-value=5.2e-17  Score=142.80  Aligned_cols=229  Identities=16%  Similarity=0.122  Sum_probs=146.6

Q ss_pred             cceeEeeccCCCC---CCCCCCCCeeeccccccCCCCCCCCCccCCC-CChhHHHHHHHHHhHhCCCceEEecchHHHHH
Q 024619            9 VSTLLMNFSNEFD---PYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLDKADRALCFTSGMAALA   84 (265)
Q Consensus         9 ~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~   84 (265)
                      .+.++++|. +++   ++|..+|.+..+..-....    ... .++. ..+..+++++.+.+..+.+.++++++|++|+.
T Consensus        27 ~G~~~lD~~-s~~~~~~lG~~~p~v~~a~~~~~~~----~~~-~~~~~~~~~~~~la~~l~~~~~~~~~~~~~sG~~a~~  100 (377)
T PRK02936         27 NGKTYLDFT-SGIAVCNLGHCHPTVTKAVQEQLDD----IWH-VSNLFTNSLQEEVASLLAENSAGDLVFFCNSGAEANE  100 (377)
T ss_pred             CCCEEEECC-cchhhccCCCCCHHHHHHHHHHHHh----ccc-cccccCCHHHHHHHHHHHhcCCCCEEEEeCCcHHHHH
Confidence            356899998 666   8998666655554322221    111 1222 34668888999988877777889999999886


Q ss_pred             -HHHHh--cCCCCEEEEcCCCCCChHHHHHhhcCCCC---------eEEEeecCCCHHHHHhhcCCCceEEEEecCCCCc
Q 024619           85 -AVTHL--LGTGEEIVAGDDLYGGTDRLLSRVTPKTG---------VVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPR  152 (265)
Q Consensus        85 -~~~~~--~~~g~~viv~~~~~~~~~~~~~~~~~~~g---------~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~  152 (265)
                       ++...  ...+++|++.++.|++.............         ..+..++.+|++++++.+.+++++|+++++++++
T Consensus       101 ~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ii~e~i~~~~  180 (377)
T PRK02936        101 AALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFNDIKALKEVMNEEVAAVMLEVVQGEG  180 (377)
T ss_pred             HHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCCCCHHHHHHhccCCeEEEEEecccCCC
Confidence             44322  23346788888888865433212111100         1234556678999999998889999999999988


Q ss_pred             cccc----cHHHHHHHHHHcCCEEEEeCCcCC-CCCcCC-----CCCCccEEEeccccccccCCCceeeEEEeechhHHH
Q 024619          153 QQIC----DIRKIAEMAHAHGALLLVDNSIMS-PVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK  222 (265)
Q Consensus       153 G~~~----~l~~i~~~a~~~~~~li~D~~~~~-~~~~~~-----~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~  222 (265)
                      |.+.    .+++|.++|++||+++|+||+|.. +..+.+     .....|++  ++||.++  +|+++|+++.+++ +.+
T Consensus       181 G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l~--~G~~ig~v~~~~~-~~~  255 (377)
T PRK02936        181 GVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLDPDIV--TVAKGLG--NGIPVGAMIGKKE-LGT  255 (377)
T ss_pred             CCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhhCCCCcEE--EEccccc--CCCccEEEEEcHH-HHh
Confidence            8773    389999999999999999999852 211111     12235654  7899994  4688999987764 434


Q ss_pred             HHHHHHHhccCCCChhHHHHHHhccC
Q 024619          223 ELYFLQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      .+...........++..+..+...++
T Consensus       256 ~~~~~~~~~t~~~~~~~~aaa~a~l~  281 (377)
T PRK02936        256 AFGPGSHGSTFGGNPLAMAAAKEVLQ  281 (377)
T ss_pred             hccCCCCCCCCCCCHHHHHHHHHHHH
Confidence            33222222223445555555444443

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=99.74  E-value=6.8e-17  Score=141.76  Aligned_cols=159  Identities=18%  Similarity=0.150  Sum_probs=117.3

Q ss_pred             hhHHHHHHHHHhHhCCC--ceEEecchHHHHH-HHHHhc------CCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeec
Q 024619           55 PTRDALESLLAKLDKAD--RALCFTSGMAALA-AVTHLL------GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN  125 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~--~~i~~~~g~~al~-~~~~~~------~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~  125 (265)
                      ...+++++.+++++|.+  ..+++++|++++. ++..+.      ++||+|++++++|.++.    ..++..|++++.++
T Consensus        59 ~~~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~~~h~~~~----~~~~~~G~~~~~v~  134 (373)
T TIGR03812        59 KIEEEVVGSLGNLLHLPDAYGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHFSFE----KAAEMLGLELRYAP  134 (373)
T ss_pred             HHHHHHHHHHHHHhCCCCCCeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEECCcchHHHH----HHHHHcCCeEEEEe
Confidence            34789999999999986  3567777777764 444332      46789999999998765    45577899999887


Q ss_pred             CC-----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc--------CCC---CC
Q 024619          126 TC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS--------RPL---EL  189 (265)
Q Consensus       126 ~~-----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~--------~~~---~~  189 (265)
                      .+     |++++++++.+++..+++..++||||.+.|+++|.++|+++|+++++|++|+.+...        ...   ..
T Consensus       135 ~~~~~~~d~~~l~~~l~~~~~~vv~~~~~~~tG~~~~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~  214 (373)
T TIGR03812       135 LDEDYTVDVKDVEDLIDDNTIGIVGIAGTTELGQIDDIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLP  214 (373)
T ss_pred             eCCCCCcCHHHHHHHHhhCcEEEEEECCCCCCCccCCHHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCC
Confidence            53     899999998877754444447899999999999999999999999999999754321        011   13


Q ss_pred             CccEEEeccccccccCCCceeeEEEeech
Q 024619          190 GADIVMHSATKFIAGHSDVMAGVLAVKGE  218 (265)
Q Consensus       190 ~~di~~~s~sK~~~g~~g~~~G~v~~~~~  218 (265)
                      +.|.+..|.+||..+|.+. +++++.+++
T Consensus       215 ~~d~~~~s~~K~~~~~~~~-G~~~~~~~~  242 (373)
T TIGR03812       215 GVQSITIDPHKMGLSPIPA-GGILFRSKS  242 (373)
T ss_pred             CCCEEEECccccCCCcCCc-eEEEEeCHH
Confidence            6788899999976544332 344444443

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=99.74  E-value=8.3e-17  Score=142.71  Aligned_cols=227  Identities=18%  Similarity=0.180  Sum_probs=143.5

Q ss_pred             CcceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CChhHHHHHHHHHhHhCCCceEEecchHHHHH
Q 024619            8 GVSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLDKADRALCFTSGMAALA   84 (265)
Q Consensus         8 ~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~   84 (265)
                      ..+.++++|.++  ++++|..+|.+.++..-...+    . ..++.. ..+...++++.++++.+.+.+++++||++|+.
T Consensus        37 ~dG~~~iD~~~~~~~~~lGh~~p~v~~a~~~~~~~----~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~sGseA~e  111 (403)
T PRK05093         37 QQGKEYIDFAGGIAVTALGHCHPALVKALKEQGEK----L-WHISNVFTNEPALRLAKKLIDATFAERVFFANSGAEANE  111 (403)
T ss_pred             CCCCEEEEcCcCHHhccCCCCCHHHHHHHHHHHHh----c-CcccCccCCHHHHHHHHHHHhhCCCCEEEEeCchHHHHH
Confidence            345689999733  689999555555543322211    0 111122 34567799999999988788999999998875


Q ss_pred             HHHHhc---------CCCCEEEEcCCCCCChHHHHHhh---------cCCCCeEEEeecCCCHHHHHhhcCCCceEEEEe
Q 024619           85 AVTHLL---------GTGEEIVAGDDLYGGTDRLLSRV---------TPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVE  146 (265)
Q Consensus        85 ~~~~~~---------~~g~~viv~~~~~~~~~~~~~~~---------~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~  146 (265)
                      .+..+.         ...+.|+..+.+|++........         ......++..++..|++++++.+.+++++|+++
T Consensus       112 ~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~aaiiie  191 (403)
T PRK05093        112 AAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPFNDLAAVKAVIDDHTCAVVVE  191 (403)
T ss_pred             HHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCCCCHHHHHHHhcCCeEEEEEe
Confidence            333322         12456787787777764321111         111123456677789999999998889999999


Q ss_pred             cCCCCcccc-cc----HHHHHHHHHHcCCEEEEeCCcCC-CCCcCC-----CCCCccEEEeccccccccCCCceeeEEEe
Q 024619          147 SPTNPRQQI-CD----IRKIAEMAHAHGALLLVDNSIMS-PVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAV  215 (265)
Q Consensus       147 ~~~np~G~~-~~----l~~i~~~a~~~~~~li~D~~~~~-~~~~~~-----~~~~~di~~~s~sK~~~g~~g~~~G~v~~  215 (265)
                      . .|++|.+ .+    +++|+++|++||+++|+||+|.. +..+..     .....|  +.|+||.++  +|+++|+++.
T Consensus       192 p-~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pd--i~s~sK~l~--~G~rig~vv~  266 (403)
T PRK05093        192 P-IQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVTPD--ILTSAKALG--GGFPIGAMLT  266 (403)
T ss_pred             c-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCC--EEEeccccc--CCcceEEEEE
Confidence            5 5556544 22    89999999999999999999872 111211     122356  458899995  5799999998


Q ss_pred             echhHHHHHHHHHHhccCCCChhHHHHHHh
Q 024619          216 KGERLAKELYFLQNAEGSGLAPFDCWICLR  245 (265)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (265)
                      +++.. +.+...........++..++....
T Consensus       267 ~~~i~-~~l~~~~~~~t~~~~~~~~~aa~a  295 (403)
T PRK05093        267 TAEIA-SHFKVGTHGSTYGGNPLACAVAEA  295 (403)
T ss_pred             cHHHH-hhcCCCCCCCCCCCCHHHHHHHHH
Confidence            77543 323221222233445555544444

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.73  E-value=5.8e-17  Score=154.46  Aligned_cols=171  Identities=17%  Similarity=0.146  Sum_probs=136.4

Q ss_pred             CCccCCC----CCh-hHHHHHHHHHhHhCCCceEEecchH----HHHH-HHHHhcCC-CC----EEEEcCCCCCChHHHH
Q 024619           46 PYDYTRS----GNP-TRDALESLLAKLDKADRALCFTSGM----AALA-AVTHLLGT-GE----EIVAGDDLYGGTDRLL  110 (265)
Q Consensus        46 ~~~y~~~----g~~-~~~~l~~~l~~~~g~~~~i~~~~g~----~al~-~~~~~~~~-g~----~viv~~~~~~~~~~~~  110 (265)
                      -+.|.+.    |.. ..+++++++++++|.+.+.+..+++    .++. ++..+.++ ||    +|+++..+|+++...|
T Consensus       554 ~hp~~p~~~~~g~~~~~~~~r~~la~i~g~~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a  633 (993)
T PLN02414        554 IHPFAPVDQAQGYQEMFEDLGDLLCEITGFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASA  633 (993)
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHHHH
Confidence            3445555    554 4889999999999997666665554    3543 66777766 88    8999999999998555


Q ss_pred             HhhcCCCCeEEEeecCC-----CHHHHHhhcCC---CceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCC
Q 024619          111 SRVTPKTGVVVKRVNTC-----DLDEVASAIGP---WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV  182 (265)
Q Consensus       111 ~~~~~~~g~~~~~~~~~-----d~~~l~~~~~~---~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~  182 (265)
                          ...|++++.++.+     |++++++++.+   ++++|++++|+|.+|...|+++|+++|+++|+++++|.++..+.
T Consensus       634 ----~~~G~~vv~v~~d~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~  709 (993)
T PLN02414        634 ----AMCGMKIVVVGTDAKGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQ  709 (993)
T ss_pred             ----HHCCCEEEEeccCCCCCcCHHHHHHHHhccCCCeEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhc
Confidence                3479999999864     89999999984   78999999999999999999999999999999999999997665


Q ss_pred             C--cCCCCCCccEEEeccccccccCCCc---eeeEEEeechhH
Q 024619          183 L--SRPLELGADIVMHSATKFIAGHSDV---MAGVLAVKGERL  220 (265)
Q Consensus       183 ~--~~~~~~~~di~~~s~sK~~~g~~g~---~~G~v~~~~~~~  220 (265)
                      .  ..+.+.+.|++++|.+|+|++|.|.   -.|++.++++..
T Consensus       710 ~~l~~p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~  752 (993)
T PLN02414        710 VGLTSPGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLA  752 (993)
T ss_pred             cCcCCccccCCCEEEecCCccCCcCcccCCCCeeeEEEchhhc
Confidence            3  4577899999999999988755430   048888877544

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=99.73  E-value=8.8e-17  Score=140.92  Aligned_cols=159  Identities=19%  Similarity=0.139  Sum_probs=122.3

Q ss_pred             hHHHHHHHHHhHhCCC--ceEEecchHHHHH-HHHHhcC----CCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-
Q 024619           56 TRDALESLLAKLDKAD--RALCFTSGMAALA-AVTHLLG----TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-  127 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~~i~~~~g~~al~-~~~~~~~----~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-  127 (265)
                      ..+++++++++++|.+  ..+++++|++++. ++..+.+    ++++|+++++.|.++.    ..++..|++++.++.+ 
T Consensus        60 ~~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~~~~h~s~~----~~~~~~g~~~~~v~~~~  135 (371)
T PRK13520         60 LEEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAARNLAKAEKPNIVVPESAHFSFD----KAADMLGVELRRAPLDD  135 (371)
T ss_pred             HHHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHHhhccCCCceEEecCcchHHHH----HHHHHcCceEEEecCCC
Confidence            3689999999999976  3567777778875 4444433    5789999999987764    5556778898888753 


Q ss_pred             ----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc---C-----CCCCCccEEE
Q 024619          128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS---R-----PLELGADIVM  195 (265)
Q Consensus       128 ----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~---~-----~~~~~~di~~  195 (265)
                          |++++++++.+++++|++.+++|++|.+.|+++|.++|+++|+++++|++|+.+..+   .     ....+.|.+.
T Consensus       136 ~~~~d~~~l~~~i~~~~~~vi~~~~~~~tG~~~~l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~  215 (371)
T PRK13520        136 DYRVDVKAVEDLIDDNTIGIVGIAGTTELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSIT  215 (371)
T ss_pred             CCcCCHHHHHHHHhhCCEEEEEEcCCcCCcccCCHHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCCCCceEE
Confidence                899999999888888888888899999999999999999999999999999855421   1     1124678999


Q ss_pred             eccccccccCCCceeeEEEeechhH
Q 024619          196 HSATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       196 ~s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                      .|.+||..+|.  ++|+++..++..
T Consensus       216 ~s~~K~~~a~~--~~G~~~~~~~~~  238 (371)
T PRK13520        216 IDPHKMGLAPI--PAGGILFRDESY  238 (371)
T ss_pred             ECCccccCccC--CceEEEEcCHHH
Confidence            99999875543  356666555443

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=99.73  E-value=1.4e-16  Score=140.98  Aligned_cols=203  Identities=19%  Similarity=0.143  Sum_probs=137.2

Q ss_pred             cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHHHH
Q 024619            9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAV   86 (265)
Q Consensus         9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~~~   86 (265)
                      .+.++++|.++  ++++|...|.+..+..-+....    ........++...+++++++++.+.+.+++++||++|+...
T Consensus        33 dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~~~~~~----~~~~~~~~~~~~~~la~~L~~~~~~~~~~f~~SGseA~e~A  108 (397)
T TIGR03246        33 QGKEYIDFAGGIAVNALGHAHPELVKALIEQADKL----WHIGNGYTNEPVLRLAKKLVDATFADKVFFCNSGAEANEAA  108 (397)
T ss_pred             CCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhc----ccccCccCCHHHHHHHHHHHhhCCCCEEEEeCCcHHHHHHH
Confidence            45789999743  8999997666655543222211    11111113466889999999999888899999999988633


Q ss_pred             HHhc---------CCCCEEEEcCCCCCChHHHHHhhcCC---------CCeEEEeecCCCHHHHHhhcCCCceEEEEecC
Q 024619           87 THLL---------GTGEEIVAGDDLYGGTDRLLSRVTPK---------TGVVVKRVNTCDLDEVASAIGPWTKLVWVESP  148 (265)
Q Consensus        87 ~~~~---------~~g~~viv~~~~~~~~~~~~~~~~~~---------~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~  148 (265)
                      +.+.         ...+.|+..+.+|++...........         ....+..++.+|++++++.+.+++++|+++++
T Consensus       109 lk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~aavi~Epi  188 (397)
T TIGR03246       109 LKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPYNDLAAAKALISDKTCAVIVEPI  188 (397)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCCCCHHHHHHHhccCeEEEEEecc
Confidence            3332         12456777777777764322121110         01234566777999999999888999999988


Q ss_pred             CCCccccc----cHHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CCCCCccEEEeccccccccCCCceeeEEEeech
Q 024619          149 TNPRQQIC----DIRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGE  218 (265)
Q Consensus       149 ~np~G~~~----~l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~  218 (265)
                      +++.|.+.    .+++|.++|++||+++|+||+|. .|..+.     .....+|++  +++|.++  +|++.|+++.+++
T Consensus       189 ~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~a~~~~gv~pDi~--t~~K~lg--gG~pigav~~~~~  264 (397)
T TIGR03246       189 QGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDIL--TSAKALG--GGFPIGAMLTTTE  264 (397)
T ss_pred             cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccchhhhhcCCCCCEE--Eeehhhh--CCcceeEEEEcHH
Confidence            88777653    38999999999999999999983 222211     112346766  7899994  4688999988765


Q ss_pred             h
Q 024619          219 R  219 (265)
Q Consensus       219 ~  219 (265)
                      .
T Consensus       265 i  265 (397)
T TIGR03246       265 I  265 (397)
T ss_pred             H
Confidence            3

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=99.73  E-value=1.3e-17  Score=145.27  Aligned_cols=158  Identities=28%  Similarity=0.369  Sum_probs=122.7

Q ss_pred             hhHHHHHHHHHhHhCCCceEEecchH-HHH-HHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-----
Q 024619           55 PTRDALESLLAKLDKADRALCFTSGM-AAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~g~-~al-~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----  127 (265)
                      ....+.++..++.+|++...++++|+ .++ .++++++++||+|++++.+|-+..    ..+...|+++++++..     
T Consensus        66 G~I~eAe~~aA~~fGAd~t~flvnGsT~g~~a~i~a~~~~gd~VLv~RN~HkSv~----~alil~ga~Pvyi~p~~~~~g  141 (417)
T PF01276_consen   66 GIIKEAEELAARAFGADKTFFLVNGSTSGNQAMIMALCRPGDKVLVDRNCHKSVY----NALILSGAIPVYIPPEDNEYG  141 (417)
T ss_dssp             THHHHHHHHHHHHHTESEEEEESSHHHHHHHHHHHHHTTTTCEEEEETT--HHHH----HHHHHHTEEEEEEEEEE-TTS
T ss_pred             cHHHHHHHHHHHhcCCCeEEEEecCchHHHHHHHHHhcCCCCEEEEcCCcHHHHH----HHHHHcCCeEEEecCCccccC
Confidence            35899999999999999999888887 777 488999999999999999998887    4456789999988642     


Q ss_pred             -----CH-----HHHHhhcC--CCce---EEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCC-----cCCC
Q 024619          128 -----DL-----DEVASAIG--PWTK---LVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL-----SRPL  187 (265)
Q Consensus       128 -----d~-----~~l~~~~~--~~~~---~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~-----~~~~  187 (265)
                           ++     +.+++++.  +..+   ++++++|+. .|.+.|+++|+++|++++++|++||||+.-..     ....
T Consensus       142 i~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY-~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~lp~~a~  220 (417)
T PF01276_consen  142 IIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTY-YGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGFHPLPRSAL  220 (417)
T ss_dssp             -BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-T-TSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGCSGGGTTCS
T ss_pred             CccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCC-CeEEECHHHHHHHhcccCCEEEEEccccccccCCCCccchh
Confidence                 34     88888885  3444   499999955 89999999999999999999999999973221     2345


Q ss_pred             CCCcc-------EEEeccccccccCCCceeeEEEeechh
Q 024619          188 ELGAD-------IVMHSATKFIAGHSDVMAGVLAVKGER  219 (265)
Q Consensus       188 ~~~~d-------i~~~s~sK~~~g~~g~~~G~v~~~~~~  219 (265)
                      ..+.|       +++.|.||.+.+..  +++++..++..
T Consensus       221 ~~gad~~~~~~~~vvqS~HKtL~alt--Qts~lh~~~~~  257 (417)
T PF01276_consen  221 ALGADRPNDPGIIVVQSTHKTLPALT--QTSMLHVKGDR  257 (417)
T ss_dssp             STTSS-CTSBEEEEEEEHHHHSSS-T--T-EEEEEETCC
T ss_pred             hccCccccccceeeeechhhcccccc--cceEEEecCCC
Confidence            66788       99999999997765  57899888875

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>PRK02769 histidine decarboxylase; Provisional

Probab=99.72  E-value=2.2e-16  Score=138.17  Aligned_cols=160  Identities=16%  Similarity=0.193  Sum_probs=122.6

Q ss_pred             hHHHHHHHHHhHhCCC--c--eEEecchHHHHH-HHHHh--cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC--
Q 024619           56 TRDALESLLAKLDKAD--R--ALCFTSGMAALA-AVTHL--LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT--  126 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~--~i~~~~g~~al~-~~~~~--~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~--  126 (265)
                      ..+++.+++++++|.+  +  .+++++|++++. ++...  ..++++|++++-+|++....+    +..|++...++.  
T Consensus        66 ~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~Sv~ka~----~~lg~~~~~V~~~~  141 (380)
T PRK02769         66 FERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSKIA----RLLRIKSRVITSLP  141 (380)
T ss_pred             HHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCceehHHHHH----HHcCCCCceeccCC
Confidence            4668888999999975  3  356666778763 33322  356889999999999987554    333444444442  


Q ss_pred             ---CCHHHHHhhcCCC---ceEEEEecCCCCccccccHHHHHHHHHHcC---CEEEEeCCcCCCCCc-------CCCCCC
Q 024619          127 ---CDLDEVASAIGPW---TKLVWVESPTNPRQQICDIRKIAEMAHAHG---ALLLVDNSIMSPVLS-------RPLELG  190 (265)
Q Consensus       127 ---~d~~~l~~~~~~~---~~~i~~~~~~np~G~~~~l~~i~~~a~~~~---~~li~D~~~~~~~~~-------~~~~~~  190 (265)
                         .|++++++++.++   +.+|+++..+|++|.+.|+++|.++|+++|   +++++|.+|+.+.++       .....+
T Consensus       142 ~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idpi~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~~  221 (380)
T PRK02769        142 NGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFSFADG  221 (380)
T ss_pred             CCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCCceEEEEEecccceeecccCccccCCccCC
Confidence               3889999988765   899999999999999999999999999998   699999999987663       111227


Q ss_pred             ccEEEeccccccccCCCceeeEEEeechhHH
Q 024619          191 ADIVMHSATKFIAGHSDVMAGVLAVKGERLA  221 (265)
Q Consensus       191 ~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~  221 (265)
                      +|.++.|.|||+++|.|  +|+++.+++.+.
T Consensus       222 vDsis~s~HK~~~~P~g--~G~l~~r~~~~~  250 (380)
T PRK02769        222 IDSIAISGHKFIGSPMP--CGIVLAKKKYVE  250 (380)
T ss_pred             CCEEEECCcccCCCCCC--cEEEEEehhhhh
Confidence            89999999999977988  588888876543

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=99.72  E-value=2.6e-16  Score=131.79  Aligned_cols=210  Identities=21%  Similarity=0.207  Sum_probs=149.5

Q ss_pred             CCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEe
Q 024619           45 GPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKR  123 (265)
Q Consensus        45 ~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~  123 (265)
                      +.-.|+..  +..+++++++++++|..++++++||++|.. ++.+.++||+.|++..-+|....+......-..+.++..
T Consensus        27 ~~~~YG~D--~~~~~~e~~~ae~~g~~a~~Fv~sGT~aN~lal~~~~~~~~~vi~~~~aHi~~~E~Ga~~~~~~~~~~~~  104 (342)
T COG2008          27 GDDVYGED--PTTNALEQRIAELFGKEAALFVPSGTQANQLALAAHCQPGESVICHETAHIYTDECGAPEFFGGGQKLPI  104 (342)
T ss_pred             CCCCCCCC--HHHHHHHHHHHHHhCCceEEEecCccHHHHHHHHHhcCCCCeEEEeccccceecccCcHHHHcCCceecc
Confidence            33445444  789999999999999999999999999986 788889999999999888866654321111223345555


Q ss_pred             ec----CCCHHHHHhhcCC------CceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCC---CCCc---
Q 024619          124 VN----TCDLDEVASAIGP------WTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMS---PVLS---  184 (265)
Q Consensus       124 ~~----~~d~~~l~~~~~~------~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~---~~~~---  184 (265)
                      ++    ..++|+++..+.+      .+.++++.+.++-.|.+++   +++|.++||++|+.|+.|++.-.   -.++   
T Consensus       105 ~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg~~~  184 (342)
T COG2008         105 VPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALGVAL  184 (342)
T ss_pred             CCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcCCCH
Confidence            55    2389999997762      3556666666667899976   57889999999999999998521   1112   


Q ss_pred             CCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCC--hhHHHHHHhccCchHhhHHHHhhc
Q 024619          185 RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA--PFDCWICLRGVKTMALRVEKQQVC  260 (265)
Q Consensus       185 ~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~  260 (265)
                      .....++|.+..++||..+.|    +|.|++-+....+.....++..+..++  .+.++..+..|+.-.++....++|
T Consensus       185 ~~~~~~~D~v~~~~tK~g~~~----~gAiv~gn~~~~~~a~~~rK~~Ggl~~k~r~laA~~~~~l~~~~~~~~~~Han  258 (342)
T COG2008         185 KTIKSYVDSVSFCLTKGGGAP----VGAIVFGNRDFAKRARRWRKRAGGLMRKARFLAAQGLYALEDDVWRLAADHAN  258 (342)
T ss_pred             HHHHhhCCEEEEecccCCcce----eeeEEEcCHHHHHHHHHHHHHhcccHhhhhHHHHHHHHHHhccHHHHHHHHHH
Confidence            122347899999999988655    466666666777778888888887766  344555666666544555544444

>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]

Probab=99.70  E-value=4e-16  Score=132.64  Aligned_cols=174  Identities=18%  Similarity=0.221  Sum_probs=129.2

Q ss_pred             CCccCCC-CChh-HHHHHHHHHhHhC----CCceEEecch-HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCC
Q 024619           46 PYDYTRS-GNPT-RDALESLLAKLDK----ADRALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (265)
Q Consensus        46 ~~~y~~~-g~~~-~~~l~~~l~~~~g----~~~~i~~~~g-~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~  117 (265)
                      .++|+.+ |.|+ +..+.+.....+.    .+-.+++++| +.++. +++.+++.||.|+++.++|++..    +..+..
T Consensus        93 alQYg~s~G~peLl~fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~~N~gd~vlie~~ty~~AL----~s~~a~  168 (472)
T KOG0634|consen   93 ALQYGQSSGIPELLLFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTLINRGDHVLIEEYTYPSAL----QSMEAL  168 (472)
T ss_pred             hhccccccCcHHHHHHHHHhccccccCCCCCCceEEEecCCchHHHHHHHHhhcCCCceEEecccchHHH----Hhcccc
Confidence            4788888 8875 6666665552222    2224555555 58886 88999999999999999998887    666888


Q ss_pred             CeEEEeecCC----CHHHHHhhcC---------CCceEE-EEecCCCCccccccH---HHHHHHHHHcCCEEEEeCCcCC
Q 024619          118 GVVVKRVNTC----DLDEVASAIG---------PWTKLV-WVESPTNPRQQICDI---RKIAEMAHAHGALLLVDNSIMS  180 (265)
Q Consensus       118 g~~~~~~~~~----d~~~l~~~~~---------~~~~~i-~~~~~~np~G~~~~l---~~i~~~a~~~~~~li~D~~~~~  180 (265)
                      |++++.++++    ++|.+++.+.         ++++++ .++.-+||||....+   ++|.++||+|+++||+||.|..
T Consensus       169 gv~~ipv~md~~Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdpYy~  248 (472)
T KOG0634|consen  169 GVKIIPVKMDQDGIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDPYYF  248 (472)
T ss_pred             CceEEeccccCCCCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCccce
Confidence            9999999876    6777777653         235555 446778999999765   7899999999999999999863


Q ss_pred             CCCc------------------------CCC---CCCccEEEeccccccccCCCceeeEEEeechhHHHHHH
Q 024619          181 PVLS------------------------RPL---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY  225 (265)
Q Consensus       181 ~~~~------------------------~~~---~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~  225 (265)
                      ..+.                        ..+   ..|++|...||||.+ + ||+|.||+.+++..+...+.
T Consensus       249 Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKii-a-PGlRlG~it~~~~~l~ril~  318 (472)
T KOG0634|consen  249 LQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKII-A-PGLRLGWITGNSLFLKRILD  318 (472)
T ss_pred             eeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhh-c-CcceeEEeecCHHHHHHHhh
Confidence            2221                        111   225779999999988 5 57999999988866655443

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=99.70  E-value=3.5e-16  Score=138.58  Aligned_cols=205  Identities=14%  Similarity=0.097  Sum_probs=134.7

Q ss_pred             cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-H
Q 024619            9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-A   85 (265)
Q Consensus         9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~   85 (265)
                      .+.++++|.+.  +-.+|..+|.+.++.......    ..+.......+..+.+++.++++.+.+.+++++||++|+. +
T Consensus        29 dg~~~lD~~~~~~~~~~Gh~~p~v~~a~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SGs~A~e~a  104 (400)
T PTZ00125         29 EGKKYYDFLSAYSAVNQGHCHPKILAALINQAQK----LTLTSRAFYNDVLGLAEKYITDLFGYDKVLPMNSGAEAGETA  104 (400)
T ss_pred             CCCEEEEcccCHhhccCCcCCHHHHHHHHHHHHh----cccccccccCHHHHHHHHHHHhCCCCCEEEEeCCcHHHHHHH
Confidence            34678888732  112555666666554322221    1111111124578899999999998888999999998885 4


Q ss_pred             HHHhc----------CCCCEEEEcCCCCCChHHHHHhhcCCC---------CeEEEeecCCCHHHHHhhcC-CCceEEEE
Q 024619           86 VTHLL----------GTGEEIVAGDDLYGGTDRLLSRVTPKT---------GVVVKRVNTCDLDEVASAIG-PWTKLVWV  145 (265)
Q Consensus        86 ~~~~~----------~~g~~viv~~~~~~~~~~~~~~~~~~~---------g~~~~~~~~~d~~~l~~~~~-~~~~~i~~  145 (265)
                      +..+.          ..++.|++.+.+|+.............         ...+..++..|++++++.+. +++++|++
T Consensus       105 l~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~v~~  184 (400)
T PTZ00125        105 LKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDYNDVEALEKLLQDPNVAAFIV  184 (400)
T ss_pred             HHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCCCCHHHHHHHhCCCCeEEEEE
Confidence            44332          134678888888877643321111110         00234455668999999986 67999999


Q ss_pred             ecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CCCCCccEEEeccccccccCCCceeeEEEe
Q 024619          146 ESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAV  215 (265)
Q Consensus       146 ~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~~~~~di~~~s~sK~~~g~~g~~~G~v~~  215 (265)
                      ++++||+|.+.+    +++|.++|++||+++|+||+|. .+..+.     ......|+++  ++|+++ .++.+.|++++
T Consensus       185 ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~~pd~~~--~sK~l~-~g~~~ig~v~~  261 (400)
T PTZ00125        185 EPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGVKPDIVL--LGKALS-GGLYPISAVLA  261 (400)
T ss_pred             cCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhHHHhcCCCCCEEE--Eccccc-CCCcCcEEEEE
Confidence            999999999987    9999999999999999999985 332211     1223457665  679995 34447899988


Q ss_pred             echhH
Q 024619          216 KGERL  220 (265)
Q Consensus       216 ~~~~~  220 (265)
                      +++.+
T Consensus       262 ~~~~~  266 (400)
T PTZ00125        262 NDDVM  266 (400)
T ss_pred             cHHHH
Confidence            77543

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=99.67  E-value=1.9e-15  Score=134.16  Aligned_cols=156  Identities=21%  Similarity=0.208  Sum_probs=112.8

Q ss_pred             HHHHHHhHhCCC-ceEEecchHHHH-HHHHHhcCC-------------------------------CCEEEEcCCCCCCh
Q 024619           60 LESLLAKLDKAD-RALCFTSGMAAL-AAVTHLLGT-------------------------------GEEIVAGDDLYGGT  106 (265)
Q Consensus        60 l~~~l~~~~g~~-~~i~~~~g~~al-~~~~~~~~~-------------------------------g~~viv~~~~~~~~  106 (265)
                      ..++.+++||++ ..+-..||+.|. .++.++++|                               ||+|+..+..++..
T Consensus       100 ~~~ra~~lf~a~~anvqp~Sg~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGH  179 (493)
T PRK13580        100 AAEHAKELFGAEHAYVQPHSGADANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGH  179 (493)
T ss_pred             HHHHHHHHhCCCcccccCCCcHHHHHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCe
Confidence            345667889998 466677888776 577888876                               79999776655444


Q ss_pred             HHHHHhhcCCCC--eEEEeecC------CCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCc
Q 024619          107 DRLLSRVTPKTG--VVVKRVNT------CDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSI  178 (265)
Q Consensus       107 ~~~~~~~~~~~g--~~~~~~~~------~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~  178 (265)
                      .... ......+  .+....++      .|.+++++.+.++++.|++++.+|. |...|+++|.++|+++|+++++|++|
T Consensus       180 lthg-~~~n~~~~~~~~~~y~vd~~~g~iD~d~l~~~~~~~~plvii~g~S~~-~~~~dl~~i~eia~~~gA~L~VD~AH  257 (493)
T PRK13580        180 LTHG-FRPNISGKMFHQRSYGVDPDTGLLDYDEIAALAREFKPLILVAGYSAY-PRRVNFAKLREIADEVGAVLMVDMAH  257 (493)
T ss_pred             eecC-cccchhhheeeeEecccCcccCccCHHHHHHHHhhcCCEEEEeCcccc-CCCcCHHHHHHHHHHcCCEEEEECch
Confidence            2110 0001111  22222222      3889999999988999999999887 55779999999999999999999999


Q ss_pred             CCCCCcCCC-------CCCccEEEeccccccccCCCceeeEEEeechhH
Q 024619          179 MSPVLSRPL-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       179 ~~~~~~~~~-------~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                      +.|.++-..       ..++|++++|+||++.||.   +|+++++++..
T Consensus       258 ~~Gligg~~~~~~~~~~~~~D~vtgT~hKaL~GP~---GG~I~~~~~l~  303 (493)
T PRK13580        258 FAGLVAGKVFTGDEDPVPHADIVTTTTHKTLRGPR---GGLVLAKKEYA  303 (493)
T ss_pred             hhceeccccchhhcCCCCCCcEEEeCChhhccCCC---eEEEEecHHHH
Confidence            988875111       1368999999999997775   58998876543

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=99.67  E-value=2.6e-15  Score=134.85  Aligned_cols=153  Identities=19%  Similarity=0.163  Sum_probs=111.9

Q ss_pred             HHHHHHhHhCCC-ceEEe----cchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcC------CCCeEEEeecCC
Q 024619           60 LESLLAKLDKAD-RALCF----TSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTP------KTGVVVKRVNTC  127 (265)
Q Consensus        60 l~~~l~~~~g~~-~~i~~----~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~  127 (265)
                      .++.+++++|++ +.+.+    ++|++++. ++.+++++||+|++++..|++....+....+      ..+.++..++++
T Consensus        85 ar~~~a~lf~a~~~~~~~~~~~~sgt~an~~v~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~  164 (452)
T PTZ00094         85 CQKRALEAFGLDPEEWGVNVQPYSGSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVN  164 (452)
T ss_pred             HHHHHHHHhCCCcccceeecCCCchHHHHHHHHHHhcCCCCEEEecccccCCcccccccccccccccceeeeeeeecccC
Confidence            456889999987 33322    46787875 6888899999999998888887643321111      111333343333


Q ss_pred             -----CHHHHHhhcCC-CceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-----CCCCCCccEEEe
Q 024619          128 -----DLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLELGADIVMH  196 (265)
Q Consensus       128 -----d~~~l~~~~~~-~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~~~~~~di~~~  196 (265)
                           |.+++++.+.+ ++++|++.  ++.+|...|+++|.++|+++|+++++|++|+.|.++     .+. .+.|++++
T Consensus       165 ~~g~id~~~L~~~l~~~~~~lvi~~--~s~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~-~~~D~l~~  241 (452)
T PTZ00094        165 EKGLIDYDKLEELAKAFRPKLIIAG--ASAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPF-PYADVVTT  241 (452)
T ss_pred             CCCCcCHHHHHHHHHHhCCCEEEEe--CCCCCCccCHHHHHHHHHHcCCEEEEeccchhccccCCCCCCCC-CCCcEEEc
Confidence                 89999998853 56777654  344899999999999999999999999999998874     232 26899999


Q ss_pred             ccccccccCCCceeeEEEeech
Q 024619          197 SATKFIAGHSDVMAGVLAVKGE  218 (265)
Q Consensus       197 s~sK~~~g~~g~~~G~v~~~~~  218 (265)
                      |+|||+.||.|   |+++.++.
T Consensus       242 S~hK~l~GP~G---g~l~~~~~  260 (452)
T PTZ00094        242 TTHKSLRGPRS---GLIFYRKK  260 (452)
T ss_pred             CCccCCCCCCc---eEEEEecc
Confidence            99999988874   77766654

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=99.66  E-value=9.2e-17  Score=135.26  Aligned_cols=176  Identities=26%  Similarity=0.288  Sum_probs=128.7

Q ss_pred             ccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC
Q 024619           48 DYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT  126 (265)
Q Consensus        48 ~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~  126 (265)
                      .|+..  +..+++++.+++++|.+..+++.+|++|.. ++..+++|++.|+..+++|....+.- ......|.+++.++.
T Consensus        24 ~Yg~D--~~~~~l~~~i~~l~g~e~a~f~~sGT~An~~al~~~~~~~~~vi~~~~aHi~~~E~g-a~~~~~G~~~~~l~~  100 (290)
T PF01212_consen   24 AYGED--PTTARLEERIAELFGKEAALFVPSGTMANQLALRAHLRPGESVICADTAHIHFDETG-AIEELSGAKLIPLPS  100 (290)
T ss_dssp             CTTSS--HHHHHHHHHHHHHHTSSEEEEESSHHHHHHHHHHHHHHTTEEEEEETTEHHHHSSTT-HHHHHTTCEEEEEBE
T ss_pred             ccCCC--hhHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHhcCCceeccccceeeeeccc-hhhHhcCcEEEECCC
Confidence            44443  889999999999999999999999998875 77778899999999998775443221 222447888888874


Q ss_pred             C-----CHHHHHhhcC------CCceEEEEecCCCCc-cccc---cHHHHHHHHHHcCCEEEEeCCcC---C---CCCcC
Q 024619          127 C-----DLDEVASAIG------PWTKLVWVESPTNPR-QQIC---DIRKIAEMAHAHGALLLVDNSIM---S---PVLSR  185 (265)
Q Consensus       127 ~-----d~~~l~~~~~------~~~~~i~~~~~~np~-G~~~---~l~~i~~~a~~~~~~li~D~~~~---~---~~~~~  185 (265)
                      .     +++++++.+.      .++++|++++++|.. |.++   ++++|.++|++||+.++.|++.-   .   +....
T Consensus       101 ~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~~~~  180 (290)
T PF01212_consen  101 DDDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALGVSLA  180 (290)
T ss_dssp             CTGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHHHHH
T ss_pred             cccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhcccccHH
Confidence            3     6888888875      358899999999964 6665   47899999999999999999942   1   11112


Q ss_pred             CCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHH
Q 024619          186 PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN  229 (265)
Q Consensus       186 ~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~  229 (265)
                      .....+|.+..|++|.++.|.   +++++++++.+.+.....+.
T Consensus       181 e~~~~~D~v~~~~tK~~g~~~---Gavl~~~~~~i~~~~~~~k~  221 (290)
T PF01212_consen  181 EIAAGADSVSFGGTKNGGAPG---GAVLAGNKEFIAKARRQRKR  221 (290)
T ss_dssp             HHHTTSSEEEEETTSTT-SSS---EEEEEESHHHHHHHHHHHHH
T ss_pred             HHhhhCCEEEEEEEccccccc---ceEEEechHHHHHHHHHHHH
Confidence            223579999999999986664   58888887766554444333

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=99.65  E-value=3e-15  Score=132.84  Aligned_cols=228  Identities=16%  Similarity=0.148  Sum_probs=145.3

Q ss_pred             CcceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHHH
Q 024619            8 GVSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAA   85 (265)
Q Consensus         8 ~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~~   85 (265)
                      ..+.++++|.+  ++.++|...|.+..+..-+....    ........++...++++.++++.+.+.+++++||++|+..
T Consensus        36 ~dG~~~lD~~~g~~~~~lGh~~p~v~~A~~~~~~~~----~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sGseA~e~  111 (406)
T PRK12381         36 QQGKEYIDFAGGIAVNALGHAHPALREALNEQASKF----WHTGNGYTNEPVLRLAKKLIDATFADRVFFCNSGAEANEA  111 (406)
T ss_pred             CCCCEEEEcCcCHhhccCCCCCHHHHHHHHHHHhhc----ccccCccCCHHHHHHHHHHHhhCCCCeEEEcCCcHHHHHH
Confidence            34568999973  36899999766666554222211    1111111345678899999998888889999999999853


Q ss_pred             HHHhc---------CCCCEEEEcCCCCCChHHHHHhhcCCCC---------eEEEeecCCCHHHHHhhcCCCceEEEEec
Q 024619           86 VTHLL---------GTGEEIVAGDDLYGGTDRLLSRVTPKTG---------VVVKRVNTCDLDEVASAIGPWTKLVWVES  147 (265)
Q Consensus        86 ~~~~~---------~~g~~viv~~~~~~~~~~~~~~~~~~~g---------~~~~~~~~~d~~~l~~~~~~~~~~i~~~~  147 (265)
                      .+.+.         .++..|+..+.+|++.............         ..+..++.+|++++++.+.+++++|+++ 
T Consensus       112 Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~aaviiE-  190 (406)
T PRK12381        112 ALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLNSASALIDDQTCAVIVE-  190 (406)
T ss_pred             HHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCCCHHHHHHhccCCeeEEEEe-
Confidence            33321         2356788888999888643212111100         1234556678999999998889999997 


Q ss_pred             CCCCcccc-----ccHHHHHHHHHHcCCEEEEeCCcC-CCCCcCC-----CCCCccEEEeccccccccCCCceeeEEEee
Q 024619          148 PTNPRQQI-----CDIRKIAEMAHAHGALLLVDNSIM-SPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVK  216 (265)
Q Consensus       148 ~~np~G~~-----~~l~~i~~~a~~~~~~li~D~~~~-~~~~~~~-----~~~~~di~~~s~sK~~~g~~g~~~G~v~~~  216 (265)
                      |.+++|.+     ..+++|.++|++||+++|+||+|. .+..+..     .....|+  .|++|.++  +|++.|+++.+
T Consensus       191 Pv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~~~~~~~v~pDi--~t~sK~l~--gG~~ig~~~~~  266 (406)
T PRK12381        191 PIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDV--LTTAKALG--GGFPIGAMLTT  266 (406)
T ss_pred             CCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchhhhHhhCCCCCE--EEehhhhh--CCCceEEEEEc
Confidence            56777654     348999999999999999999983 2222211     1224565  48899995  46899999887


Q ss_pred             chhHHHHHHHHHHhccCCCChhHHHHHHh
Q 024619          217 GERLAKELYFLQNAEGSGLAPFDCWICLR  245 (265)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (265)
                      ++.+ +.+...........++..+.....
T Consensus       267 ~~~~-~~~~~~~~~~t~~~~pl~~aaa~a  294 (406)
T PRK12381        267 EKCA-SVMTVGTHGTTYGGNPLASAVAGK  294 (406)
T ss_pred             HHHH-hhcCCCCCCCCCCCCHHHHHHHHH
Confidence            6543 333221122223445555444333

>PLN02724 Molybdenum cofactor sulfurase

Probab=99.65  E-value=2.7e-15  Score=143.07  Aligned_cols=162  Identities=16%  Similarity=0.086  Sum_probs=123.8

Q ss_pred             hHHHHHHHHHhHhCCC--c-eEEecch-HHHHH-HHHHh-cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC--
Q 024619           56 TRDALESLLAKLDKAD--R-ALCFTSG-MAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--  127 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~-~i~~~~g-~~al~-~~~~~-~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--  127 (265)
                      ..++.++.+++++|++  + .+++++| ++++. ++..+ .++||+|+++.-.|++.. .|...++..|+++..++.+  
T Consensus        79 ~~e~aR~~ia~~lga~~~~~~VvFtsnaT~alnlva~~l~~~~gd~Iv~t~~eH~svl-~~~~~a~~~G~~v~~v~~~~~  157 (805)
T PLN02724         79 TIESARQQVLEYFNAPPSDYACVFTSGATAALKLVGETFPWSSESHFCYTLENHNSVL-GIREYALEKGAAAIAVDIEEA  157 (805)
T ss_pred             HHHHHHHHHHHHhCCCccceEEEEeCChHHHHHHHHHHCCCCCCCeEEEeeccccchH-HHHHHHHHcCCeEEeccchhc
Confidence            5889999999999985  3 4667765 58887 44555 688999999888888876 4446667789999888754  


Q ss_pred             -------------CHHHHHhhc----------CCCceEEEEecCCCCccccccHHHHHHHHHHc--------CCEEEEeC
Q 024619          128 -------------DLDEVASAI----------GPWTKLVWVESPTNPRQQICDIRKIAEMAHAH--------GALLLVDN  176 (265)
Q Consensus       128 -------------d~~~l~~~~----------~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~--------~~~li~D~  176 (265)
                                   +.+++++.+          .+++++|.+++.+|.+|.+.|++.|..+++..        ++++++|.
T Consensus       158 ~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDa  237 (805)
T PLN02724        158 ANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDA  237 (805)
T ss_pred             cccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeeh
Confidence                         114455442          14568999999999999999999765444432        35799999


Q ss_pred             CcCCCCCc-CCCCCCccEEEeccccccccCCCceeeEEEeechhH
Q 024619          177 SIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       177 ~~~~~~~~-~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                      +++.|..+ +....++|++++|++||+++|.|+  |+++.+++.+
T Consensus       238 aQ~~g~~piDv~~~~~Dfl~~S~HK~~GgP~G~--G~L~vr~~~~  280 (805)
T PLN02724        238 AKGCGTSPPDLSRYPADFVVVSFYKIFGYPTGL--GALLVRRDAA  280 (805)
T ss_pred             hhhcCCCCCChhhcCCCEEEEecceeccCCCCc--eEEEEehhhh
Confidence            99999886 344668999999999999779885  8888887544

>PLN03032 serine decarboxylase; Provisional

Probab=99.65  E-value=3.4e-15  Score=129.93  Aligned_cols=160  Identities=14%  Similarity=0.111  Sum_probs=121.4

Q ss_pred             hhHHHHHHHHHhHhCCC--ce--EEecchHHHHH-HHHHhc--CCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC
Q 024619           55 PTRDALESLLAKLDKAD--RA--LCFTSGMAALA-AVTHLL--GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC  127 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~--~~--i~~~~g~~al~-~~~~~~--~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  127 (265)
                      ...+++.+++++++|.+  +.  +++++|++|+. ++....  .++..|+++.-+|.+....    ++..|++++.++.+
T Consensus        66 ~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~~~~~~~vi~s~~~H~Sv~ka----a~~lg~~~~~V~~d  141 (374)
T PLN03032         66 QFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGREVFPDGILYASRESHYSVFKA----ARMYRMEAVKVPTL  141 (374)
T ss_pred             HHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHHhCCCcEEEeCCCceeHHHHH----HHHcCCCCeEeeeC
Confidence            35778889999999975  23  77777788864 443332  3456888999999888744    44455555555533


Q ss_pred             -----CHHHHHhhcCC---CceEEEEecCCCCccccccHHHHHHHHHHcC-----CEEEEeCCcCCCCCcC-------CC
Q 024619          128 -----DLDEVASAIGP---WTKLVWVESPTNPRQQICDIRKIAEMAHAHG-----ALLLVDNSIMSPVLSR-------PL  187 (265)
Q Consensus       128 -----d~~~l~~~~~~---~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~-----~~li~D~~~~~~~~~~-------~~  187 (265)
                           |++++++++.+   ++.+|+++..+|++|.+.|+++|.++|+++|     +++++|.+++.+..+.       ..
T Consensus       142 ~~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idpi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~  221 (374)
T PLN03032        142 PSGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDDLDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTF  221 (374)
T ss_pred             CCCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCCHHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCC
Confidence                 89999999875   4778888999999999999999999999996     5899999998765431       11


Q ss_pred             CCCccEEEeccccccccCCCceeeEEEeechhH
Q 024619          188 ELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       188 ~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                      ..++|.++.|.||+.+.|.|  +|+++.++..+
T Consensus       222 ~~~vDSis~s~HK~~g~P~g--~G~ll~r~~~~  252 (374)
T PLN03032        222 RKPIGSVSVSGHKFLGCPMP--CGVALTRKKHV  252 (374)
T ss_pred             CcCCcEEEECcccccCCCcC--eEEEEEEchhh
Confidence            23689999999999966887  58888887554

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=99.65  E-value=9.7e-15  Score=127.94  Aligned_cols=171  Identities=17%  Similarity=0.144  Sum_probs=130.5

Q ss_pred             CChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC----
Q 024619           53 GNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (265)
Q Consensus        53 g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----  127 (265)
                      |.+...++++.+++++|.+.++.+++|++|+. +....++|||.|  +.+.|....   .......|..++.++.+    
T Consensus        69 g~~s~~~lE~~va~~~G~~~av~v~sGT~Al~ll~~l~l~pGDeV--psn~~f~Tt---~ahIe~~Gav~vDi~~dea~~  143 (450)
T TIGR02618        69 GSRNFYHLERTVRELYGFKYVVPTHQGRGAENLLSQIAIKPGDYV--PGNMYFTTT---RYHQEKNGATFVDIIIDEAHD  143 (450)
T ss_pred             CCCcHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHHhCCCCcCEE--CCceeHHHH---HHHHHhCCeEEEeeecccccc
Confidence            55889999999999999999999999999986 444568999977  556664443   23346677777666321    


Q ss_pred             -----------CHHHHHhhcCC----CceEEEEecCCCCc-ccc---ccHHHHHHHHHHcCCEEEEeCCcCCCC--C---
Q 024619          128 -----------DLDEVASAIGP----WTKLVWVESPTNPR-QQI---CDIRKIAEMAHAHGALLLVDNSIMSPV--L---  183 (265)
Q Consensus       128 -----------d~~~l~~~~~~----~~~~i~~~~~~np~-G~~---~~l~~i~~~a~~~~~~li~D~~~~~~~--~---  183 (265)
                                 |++++++++++    ++++|.++.++|.. |..   .+++++.++|++||+.|++|.++..+.  +   
T Consensus       144 ~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~  223 (450)
T TIGR02618       144 AQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRCVENAYFIKE  223 (450)
T ss_pred             cccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccchhhChhhhhc
Confidence                       79999999874    45578888888865 677   458999999999999999999987642  1   


Q ss_pred             ------cCCC-------CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhc
Q 024619          184 ------SRPL-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE  231 (265)
Q Consensus       184 ------~~~~-------~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~  231 (265)
                            ..+.       ....|.+++|+.|..++|.   +|+++.+++.+.+..+......
T Consensus       224 re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~~~---GG~l~~~d~~l~~k~r~~~~~~  281 (450)
T TIGR02618       224 REQGYEDKSIAEILKEMMSYADGCTMSGKKDCLVNI---GGFLCMNDDEMFQSAKELVVVF  281 (450)
T ss_pred             ccccccCCCHHHHHHHHhccCcEEEEeeccCCCCCC---ceEEEeCCHHHHHHHHHHhhhc
Confidence                  1111       1247899999999998875   6999888888888777665443

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]

Probab=99.65  E-value=2.3e-15  Score=122.38  Aligned_cols=209  Identities=22%  Similarity=0.247  Sum_probs=146.4

Q ss_pred             CCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHH-HHHHHhc-CCCCEEEEcCCCCCChHHHHHhhcCCCCeEEE
Q 024619           45 GPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL-AAVTHLL-GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVK  122 (265)
Q Consensus        45 ~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al-~~~~~~~-~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~  122 (265)
                      ++-.|+..  |...+|+++.++++|.+..++++||+++. .+++.-+ ++|.+|++.+.+|....+.. ......|+.+.
T Consensus        48 gDdVyGeD--~tt~rLE~~vA~l~GKEAgLFv~SGTmgNllaIm~Hc~~rg~eii~gd~~HI~~~E~g-g~s~l~gv~~~  124 (384)
T KOG1368|consen   48 GDDVYGED--PTTNRLEQRVAELFGKEAGLFVPSGTMGNLLAIMVHCHQRGSEIIVGDRAHIHRYEQG-GISQLAGVHVR  124 (384)
T ss_pred             CcccccCC--ccHHHHHHHHHHHhCccceeeecccccccHHHHHHHhcCCCceEEeccchheeehhcc-ChhhhccceeE
Confidence            34445444  67899999999999999999999999664 5777765 48999999998886554432 44566777777


Q ss_pred             eecCC-----CHHHHHhhcC--------CCceEEEEecCCCCcc-ccccH---HHHHHHHHHcCCEEEEeCCcCCC---C
Q 024619          123 RVNTC-----DLDEVASAIG--------PWTKLVWVESPTNPRQ-QICDI---RKIAEMAHAHGALLLVDNSIMSP---V  182 (265)
Q Consensus       123 ~~~~~-----d~~~l~~~~~--------~~~~~i~~~~~~np~G-~~~~l---~~i~~~a~~~~~~li~D~~~~~~---~  182 (265)
                      .+...     +++++++++.        +.+++|++++.+|-+| .+.|+   .++.++|++||+.+..|++.-+-   .
T Consensus       125 tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi~NAava  204 (384)
T KOG1368|consen  125 TVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARIFNAAVA  204 (384)
T ss_pred             eeeeCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHHHHHhccCCeeecchhhhhhHHHH
Confidence            77532     7999999986        2488999999998887 77775   67888999999999999985221   1


Q ss_pred             CcCCC---CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCC--hhHHHHHHhccCchHhhHHHH
Q 024619          183 LSRPL---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA--PFDCWICLRGVKTMALRVEKQ  257 (265)
Q Consensus       183 ~~~~~---~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~  257 (265)
                      .+.+.   -..+|-+.-.+||.+++|-   +.+++++++.+ .+...+++..+.++.  ...++..+-.|..-...+...
T Consensus       205 sgV~vk~i~~~fDSVsiCLSKglgAPV---GSViVG~k~FI-~kA~~~RKalGGGmRQsGvLaaaaLval~~~~~~L~~d  280 (384)
T KOG1368|consen  205 SGVPVKKICSAFDSVSICLSKGLGAPV---GSVIVGSKDFI-DKARHFRKALGGGMRQSGVLAAAALVALDENVPLLRAD  280 (384)
T ss_pred             cCCCHHHHHHhhhhhhhhhhccCCCCc---ccEEEccHHHH-HHHHHHHHHhcCchhHHHHHHHHHHHHhhcchHHHHHH
Confidence            12122   1135666677999998874   46666666555 556677776666655  344555555555433333333


Q ss_pred             hhc
Q 024619          258 QVC  260 (265)
Q Consensus       258 ~~~  260 (265)
                      .+.
T Consensus       281 Hk~  283 (384)
T KOG1368|consen  281 HKR  283 (384)
T ss_pred             HHH
Confidence            333

>PRK15029 arginine decarboxylase; Provisional

Probab=99.65  E-value=2.1e-15  Score=140.31  Aligned_cols=156  Identities=15%  Similarity=0.164  Sum_probs=125.9

Q ss_pred             hHHHHHHHHHhHhCCCceEEecchH-HHH-HHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC------
Q 024619           56 TRDALESLLAKLDKADRALCFTSGM-AAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------  127 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~~~i~~~~g~-~al-~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------  127 (265)
                      ...+.++..+++||++...++++|+ .++ .++++++++||+|++++++|-+..    ..+...|+++++++..      
T Consensus       206 ~I~eAq~~aA~~fgA~~t~FlvNGST~gn~a~i~a~~~~gd~Vlv~RN~HKSv~----~al~L~ga~Pvyl~P~~~~~Gi  281 (755)
T PRK15029        206 AFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIE----QGLILTGAKPVYMVPSRNRYGI  281 (755)
T ss_pred             HHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHH----HHHHHcCCeEEEecccccccCC
Confidence            4889999999999999888888886 676 588889999999999999998887    4557789999998622      


Q ss_pred             ----C-----HHHHHhhcC--CCce--------EEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCC-----CC
Q 024619          128 ----D-----LDEVASAIG--PWTK--------LVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSP-----VL  183 (265)
Q Consensus       128 ----d-----~~~l~~~~~--~~~~--------~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~-----~~  183 (265)
                          +     ++.+++++.  +..+        ++++++|+. .|.+.|+++|+++|++++++|++||||+.-     .+
T Consensus       282 ~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY-~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~~~  360 (755)
T PRK15029        282 IGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY-DGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIY  360 (755)
T ss_pred             ccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCC-cceeeCHHHHHHHHHhcCCeEEEECccccccccCccc
Confidence                3     788888874  2334        899999955 899999999999999999999999999731     12


Q ss_pred             c--CCC-----C-CCcc-EEEeccccccccCCCceeeEEEeech
Q 024619          184 S--RPL-----E-LGAD-IVMHSATKFIAGHSDVMAGVLAVKGE  218 (265)
Q Consensus       184 ~--~~~-----~-~~~d-i~~~s~sK~~~g~~g~~~G~v~~~~~  218 (265)
                      +  .+.     . .+.| +++.|.||.+.+..  +++++..++.
T Consensus       361 p~~sa~~~~~~~~~Gad~~vvqStHKtL~alT--QaS~LHv~~~  402 (755)
T PRK15029        361 ADHYAMRGEPGDHNGPTVFATHSTHKLLNALS--QASYIHVREG  402 (755)
T ss_pred             cccccccccccccCCCceEEEEchhhcccchh--hhhhheeCCC
Confidence            2  222     2 5788 99999999997764  5788887654

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=99.63  E-value=2.5e-14  Score=128.53  Aligned_cols=160  Identities=22%  Similarity=0.220  Sum_probs=108.2

Q ss_pred             CChhHHHHHH----HHHhHhCCC-ceEEe----cchHHHH-HHHHHhcCCCCEEEEcCCCCCChHHHH--HhhcCCCCeE
Q 024619           53 GNPTRDALES----LLAKLDKAD-RALCF----TSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLL--SRVTPKTGVV  120 (265)
Q Consensus        53 g~~~~~~l~~----~l~~~~g~~-~~i~~----~~g~~al-~~~~~~~~~g~~viv~~~~~~~~~~~~--~~~~~~~g~~  120 (265)
                      |....+++++    +..++++.+ +.+.+    .||+.|+ .++.++++|||+|+..+....++....  ....+..+..
T Consensus        74 G~~~~d~lE~~~~~~~~~~f~~~~~~~~~nv~~~SG~~AN~av~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~  153 (475)
T PLN03226         74 GNEYIDQIETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFAVYTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATS  153 (475)
T ss_pred             CChhHHHHHHHHHHHHHHHhCCCcceeEEecCcCchHHHHHHHHHHhCCCCCEEEECCCCcCcchhhhhhhcccccccce
Confidence            5555566554    455666766 44544    7898776 588999999999998553222222110  0111212222


Q ss_pred             ----EEeecCC------CHHHHHhhcC-CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcC----
Q 024619          121 ----VKRVNTC------DLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR----  185 (265)
Q Consensus       121 ----~~~~~~~------d~~~l~~~~~-~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~----  185 (265)
                          ...+.++      |.+++++.+. .++++|++. .++ +|...|+++|.++|+++|+++++|++|+.|.+..    
T Consensus       154 ~~~~~~~y~~~~~~g~iD~d~Le~~l~~~~pklIv~~-~S~-~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~  231 (475)
T PLN03226        154 IYFESMPYRLDESTGLIDYDKLEKKAMLFRPKLIIAG-ASA-YPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAA  231 (475)
T ss_pred             EEEEeeeeeecCCCCCcCHHHHHHHHhhcCCeEEEEe-cCc-CCCccCHHHHHHHHHHcCCEEEEEchhhhCcccCCCCC
Confidence                1122233      8999999886 467766553 333 6778899999999999999999999999888752    


Q ss_pred             -CCCCCccEEEeccccccccCCCceeeEEEeech
Q 024619          186 -PLELGADIVMHSATKFIAGHSDVMAGVLAVKGE  218 (265)
Q Consensus       186 -~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~  218 (265)
                       +.. ++|++++|++||+.||.|   |++++++.
T Consensus       232 ~p~~-~~Div~~t~hK~L~GP~G---g~I~~~~~  261 (475)
T PLN03226        232 SPFE-YCDVVTTTTHKSLRGPRG---GMIFFRKG  261 (475)
T ss_pred             CCCC-CCeEEEecCcccccCCCc---eEEEEchh
Confidence             222 689999999999988874   88877664

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=99.62  E-value=8.1e-15  Score=130.08  Aligned_cols=158  Identities=16%  Similarity=0.085  Sum_probs=121.1

Q ss_pred             hhHHHHHHHHHhHhCCC----ceEE--ecchHHHHH-HHHHhc--------CCC-----CEEEEcCCCCCChHHHHHhhc
Q 024619           55 PTRDALESLLAKLDKAD----RALC--FTSGMAALA-AVTHLL--------GTG-----EEIVAGDDLYGGTDRLLSRVT  114 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~----~~i~--~~~g~~al~-~~~~~~--------~~g-----~~viv~~~~~~~~~~~~~~~~  114 (265)
                      ...+++.+++++++|.+    +...  +++|++|+. ++....        +.|     ..|++++-+|.++.    +.+
T Consensus        80 ~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~----ka~  155 (431)
T TIGR01788        80 EIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWE----KFA  155 (431)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcchHHHH----HHH
Confidence            34788889999999876    2333  456678864 443321        112     36888998998886    445


Q ss_pred             CCCCeEEEeecCC------CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHc------CCEEEEeCCcCCCC
Q 024619          115 PKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH------GALLLVDNSIMSPV  182 (265)
Q Consensus       115 ~~~g~~~~~~~~~------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~------~~~li~D~~~~~~~  182 (265)
                      +..|++++.++.+      |++++++++.+++.+|.+...+|.+|.+.|+++|+++|+++      |+++++|.+|+.+.
T Consensus       156 ~~lg~~v~~i~~d~~~~~vd~~~L~~~i~~~t~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~  235 (431)
T TIGR01788       156 RYFDVELREVPMDPGRYVIDPEQVVEAVDENTIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFI  235 (431)
T ss_pred             HHcCceeEEEecCCCceeeCHHHHHHHHhhCCeEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHH
Confidence            5567777776643      78999999999999999999999999999999999999999      99999999998433


Q ss_pred             -------Cc-CCCCCCccEEEeccccccccCCCceeeEEEeech
Q 024619          183 -------LS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE  218 (265)
Q Consensus       183 -------~~-~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~  218 (265)
                             .. +....++|.+..|.|||+.+|.|  +|+++.++.
T Consensus       236 ~p~~~~~~~~~~~~~~~DSis~s~HK~~~~P~g--~G~l~~r~~  277 (431)
T TIGR01788       236 APFVYPDLEWDFRLPRVKSINVSGHKYGLVYPG--VGWVIWRDE  277 (431)
T ss_pred             HHHhCCCchhhcCCCCceEEEECchhccCCCCC--cEEEEEeCh
Confidence                   21 11234678899999999878988  588888875

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=99.61  E-value=3.5e-15  Score=131.19  Aligned_cols=153  Identities=14%  Similarity=0.096  Sum_probs=115.8

Q ss_pred             hHHHHHHHHHhHhCCC---ceEEec-chHHHHH-HHHHhcCC-CCEEEEcCCCCCChHHHHHh-hcCCCCe-EEEeecCC
Q 024619           56 TRDALESLLAKLDKAD---RALCFT-SGMAALA-AVTHLLGT-GEEIVAGDDLYGGTDRLLSR-VTPKTGV-VVKRVNTC  127 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~---~~i~~~-~g~~al~-~~~~~~~~-g~~viv~~~~~~~~~~~~~~-~~~~~g~-~~~~~~~~  127 (265)
                      ..++.++.+++++|+.   ++++++ +|+.++. ++..++++ ++.|+. ...|+..   |.. +.+..|+ +++.++.+
T Consensus        49 ~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~~l~~~~~~~vi~-~g~f~~~---~~~~~~~~~g~~~v~~~~~~  124 (378)
T PRK03080         49 LLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWSLLGARRVDHLA-WESFGSK---WATDVVKQLKLEDPRVLEAD  124 (378)
T ss_pred             HHHHHHHHHHHHhCCCCCceEEEECCchHHHHHHHHHhcCCCCcceEEE-eCHHHHH---HHHHHHhhcCCCCceEeccC
Confidence            4888999999999963   355565 6779986 66777775 444444 4565543   333 3466777 77776643


Q ss_pred             -----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEecccccc
Q 024619          128 -----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFI  202 (265)
Q Consensus       128 -----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~  202 (265)
                           |++++.    . ++.|.+++.+|.||.+.|+++|++  +++|+++++|.+++.|..+..... .|++++|.+||+
T Consensus       125 ~g~~~d~~~i~----~-~~~V~~~h~~t~tG~~~pi~~I~~--~~~g~~~vVDa~qs~G~~pidv~~-iD~~~~s~~K~l  196 (378)
T PRK03080        125 YGSLPDLSAVD----F-DRDVVFTWNGTTTGVRVPVARWIG--ADREGLTICDATSAAFALPLDWSK-LDVYTFSWQKVL  196 (378)
T ss_pred             CCCCCCHhhcC----C-CCCEEEEecCCccceeccchhhcc--ccCCCeEEEecccccccCCCCHHH-CcEEEEehhhhC
Confidence                 455432    2 567899999999999999999999  889999999999999998754443 799999999999


Q ss_pred             ccCCCceeeEEEeechhHHH
Q 024619          203 AGHSDVMAGVLAVKGERLAK  222 (265)
Q Consensus       203 ~g~~g~~~G~v~~~~~~~~~  222 (265)
                      ++|+|+  |+++.+++.+..
T Consensus       197 ~~P~G~--g~l~v~~~~~~~  214 (378)
T PRK03080        197 GGEGGH--GMAILSPRAVER  214 (378)
T ss_pred             CCCCce--EEEEECHHHHHh
Confidence            999995  999998866543

>PLN02624 ornithine-delta-aminotransferase

Probab=99.61  E-value=2.1e-14  Score=129.50  Aligned_cols=204  Identities=13%  Similarity=0.117  Sum_probs=133.8

Q ss_pred             cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-H
Q 024619            9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-A   85 (265)
Q Consensus         9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~   85 (265)
                      .+.++++|.++  +-.+|...|.+.++..-+....    .+......++...++++.++++++.+.+++++||++|+. +
T Consensus        73 dG~~ylD~~sg~~~~~~Gh~~p~v~~ai~~ql~~~----~~~~~~~~~~~~~~la~~L~~~~~~~~~~f~~SGseA~e~A  148 (474)
T PLN02624         73 EGKKYLDFLSAYSAVNQGHCHPKIIKALTEQAEKL----TLSSRAFYNDKFPEFAEYLTSMFGYDMVLPMNTGAEGVETA  148 (474)
T ss_pred             CCCEEEEcccchhcccCCCCCHHHHHHHHHHHHhc----CCcccccCCHHHHHHHHHHHhhcCCCeEEEeCChHHHHHHH
Confidence            45678898632  1236777777777765333321    111111244667889999999998888999999999885 4


Q ss_pred             HHHhcC---------CCC-EEEEcCCCCCChHHHHHhhcCCC------C---eEEEeecCCCHHHHHhhcC---CCceEE
Q 024619           86 VTHLLG---------TGE-EIVAGDDLYGGTDRLLSRVTPKT------G---VVVKRVNTCDLDEVASAIG---PWTKLV  143 (265)
Q Consensus        86 ~~~~~~---------~g~-~viv~~~~~~~~~~~~~~~~~~~------g---~~~~~~~~~d~~~l~~~~~---~~~~~i  143 (265)
                      +.....         +++ .|+....+|++............      +   ..+..++..|++.+++.+.   +++++|
T Consensus       149 lklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~iaai  228 (474)
T PLN02624        149 IKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDFGDLDALEKIFEEDGDRIAAF  228 (474)
T ss_pred             HHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCCCCHHHHHHHHHhCCCCEEEE
Confidence            432211         133 56777777777642211111000      0   1134456668888888775   568899


Q ss_pred             EEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CCCCCccEEEeccccccccCCCceeeEE
Q 024619          144 WVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVL  213 (265)
Q Consensus       144 ~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~~~~~di~~~s~sK~~~g~~g~~~G~v  213 (265)
                      ++++++|++|.+.+    +++|.++|++||+++|+||+|. .|..+.     ......|+++  ++|.++ .+++++|++
T Consensus       229 iiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~a~~~~~i~pDiv~--lsK~lg-gG~~pigav  305 (474)
T PLN02624        229 LFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWEEVRPDVVI--LGKALG-GGVIPVSAV  305 (474)
T ss_pred             EECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchhhHHhcCCCCCEEE--eccccc-CCCCcceee
Confidence            99999999999876    9999999999999999999996 222221     1223467665  589995 455778888


Q ss_pred             Eeechh
Q 024619          214 AVKGER  219 (265)
Q Consensus       214 ~~~~~~  219 (265)
                      +.+++.
T Consensus       306 ~~~~~i  311 (474)
T PLN02624        306 LADKDV  311 (474)
T ss_pred             eecHHH
Confidence            876643

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=99.61  E-value=5.2e-14  Score=113.26  Aligned_cols=160  Identities=21%  Similarity=0.212  Sum_probs=130.6

Q ss_pred             hhHHHHHHHHHhHhCCCceEEecchHHHH-HHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC------
Q 024619           55 PTRDALESLLAKLDKADRALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------  127 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~g~~al-~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------  127 (265)
                      |-...+.+.+++|+|.|.+-++.+..++= .++.+++++||.|+++..+|....    -++++.|+++..+|..      
T Consensus        61 PpI~~F~~dlaeFlg~D~~R~t~GARe~KfavMhal~~~gd~vV~D~~aHYtty----vAAEragl~v~eVp~tg~Pey~  136 (382)
T COG1103          61 PPIKDFLEDLAEFLGMDEVRVTAGAREAKFAVMHALCKEGDWVVVDSLAHYTTY----VAAERAGLNVAEVPNTGYPEYK  136 (382)
T ss_pred             CcHHHHHHHHHHHhCCceeeecccchhhHHHHHHHhccCCCEEEEcCcchHHHH----HHHHhcCCeEEecCCCCCCceE
Confidence            55667777799999999777766666885 577788999999999999886665    5668899999999843      


Q ss_pred             -CHHHHHhhcC-------CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEecc
Q 024619          128 -DLDEVASAIG-------PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSA  198 (265)
Q Consensus       128 -d~~~l~~~~~-------~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~  198 (265)
                       ++|.+.+.+.       ..+.+.+++++...-|.+.|.+.++++|+++|++++...+|..|.++ +..+.+.|++++|.
T Consensus       137 i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmpvs~ke~g~DFiVgSG  216 (382)
T COG1103         137 ITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMPVSGKEIGADFIVGSG  216 (382)
T ss_pred             ecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchhhHHHHHHHHHcCCceEeecceeeccccccccccCCCEEEecC
Confidence             4555555542       34788899999988999999999999999999999999999999986 56677999999999


Q ss_pred             ccccccCCCceeeEEEeechhH
Q 024619          199 TKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       199 sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                      ||.+.+.+  .+|++..+.+.-
T Consensus       217 HKsmAAs~--PiGvl~~~eE~a  236 (382)
T COG1103         217 HKSMAASA--PIGVLAMSEEWA  236 (382)
T ss_pred             ccchhccC--CeeEEeehhHHH
Confidence            99986543  479998876543

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=99.61  E-value=1.7e-14  Score=127.37  Aligned_cols=203  Identities=20%  Similarity=0.179  Sum_probs=134.2

Q ss_pred             cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-H
Q 024619            9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-A   85 (265)
Q Consensus         9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~   85 (265)
                      .+.++++|.+  +++++|...|.+.++..-+...    ..+.+....++...++.+++.+..+.+.+++++||++|+. +
T Consensus        34 dG~~~lD~~sg~~~~~lGh~~p~v~~a~~~q~~~----~~~~~~~~~~~~~~~la~~l~~~~~~~~v~f~~SGseA~e~A  109 (395)
T PRK03715         34 NGKRYLDFIQGWAVNCLGHCNPGMVEALAAQAEK----LINPSPAFYNEPMAKLAGLLTQHSCFDKVFFANSGAEANEGA  109 (395)
T ss_pred             CCCEEEECCcChhhccCCCCCHHHHHHHHHHHHh----cccccccccCHHHHHHHHHHhhccCCCEEEEeCCcHHHHHHH
Confidence            4578999974  5889999987766665432221    1111111233456677777877666678999999999885 4


Q ss_pred             HHHhc------CCC-CEEEEcCCCCCChHHHHHhhcCCCCe---------EEEeecCCCHHHHHhhcCCCceEEEEecCC
Q 024619           86 VTHLL------GTG-EEIVAGDDLYGGTDRLLSRVTPKTGV---------VVKRVNTCDLDEVASAIGPWTKLVWVESPT  149 (265)
Q Consensus        86 ~~~~~------~~g-~~viv~~~~~~~~~~~~~~~~~~~g~---------~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~  149 (265)
                      +..+.      ++| .+|+..+..|++..............         .+...+..|++++++.+.+++++|++++.+
T Consensus       110 ik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~aavi~Epv~  189 (395)
T PRK03715        110 IKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAELNDIASVEKLITDKTVAVMLEPVQ  189 (395)
T ss_pred             HHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCceeeCCchHHHHHHHcCCCceEEEEeCCc
Confidence            43332      123 56888888887765332122211111         112233468899999888889999999999


Q ss_pred             CCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CCCCCccEEEeccccccccCCCceeeEEEeechh
Q 024619          150 NPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGER  219 (265)
Q Consensus       150 np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~  219 (265)
                      +..|.+.+    +++|.++|++||+++|+||+|. .|..+.     .....+|++  +++|.+++  |+.+|.++.+++.
T Consensus       190 ~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv~PDi~--t~gK~lg~--G~p~~av~~~~~i  265 (395)
T PRK03715        190 GEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIEPDIM--TLGKGIGG--GVPLAALLAKAEV  265 (395)
T ss_pred             CCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhhHhhcCCCCcee--eehhhhhC--CcceEEEEEcccc
Confidence            88888866    9999999999999999999986 222221     223357875  56899964  3557877776654

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.61  E-value=1.1e-14  Score=137.68  Aligned_cols=156  Identities=21%  Similarity=0.234  Sum_probs=124.2

Q ss_pred             hHHHHHHHHHhHhCCCceEEe-cchHHHHH-HHHHhc--------CCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeec
Q 024619           56 TRDALESLLAKLDKADRALCF-TSGMAALA-AVTHLL--------GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN  125 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~~~i~~-~~g~~al~-~~~~~~--------~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~  125 (265)
                      ...++++++++++|.++.-+. ++|+++-. .++.+-        ...+.|+++.-.|+...    ..++..|++++.++
T Consensus       531 ~i~elq~~l~eltGmd~~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnP----asa~~~G~~Vv~V~  606 (939)
T TIGR00461       531 LIAQLEKWLCSITGFDAISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNP----ASAAMAGMQVVPVN  606 (939)
T ss_pred             HHHHHHHHHHHHHCCCCcccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCH----HHHHHCCCEEEEec
Confidence            488999999999999964444 44556543 333321        23467889999998886    55677899999998


Q ss_pred             CC-----CHHHHHhhcC---CCceEEEEecCCCCcccccc-HHHHHHHHHHcCCEEEEeCCcCCCC--CcCCCCCCccEE
Q 024619          126 TC-----DLDEVASAIG---PWTKLVWVESPTNPRQQICD-IRKIAEMAHAHGALLLVDNSIMSPV--LSRPLELGADIV  194 (265)
Q Consensus       126 ~~-----d~~~l~~~~~---~~~~~i~~~~~~np~G~~~~-l~~i~~~a~~~~~~li~D~~~~~~~--~~~~~~~~~di~  194 (265)
                      .+     |+++|++++.   +++++|++++|+| +|.+.+ +++|+++|+++|.++++|.++..+.  +..+.+.+.|++
T Consensus       607 ~d~~G~iDle~L~~~i~~~~~~taaV~iT~pst-~G~~e~~I~eI~~iah~~G~~v~VDgAq~~al~~l~~Pg~~GaDi~  685 (939)
T TIGR00461       607 CDQDGNIDLVDLKNKAEQHGDELAAVMVTYPST-HGVFEPTIQHACDIVHSFGGQVYLDGANMNAQVGLTSPGDLGADVC  685 (939)
T ss_pred             cCCCCCcCHHHHHHHHhhcCCceEEEEEEeCCc-CceecccHHHHHHHHHHcCCEEEEEecChhhCCCCCCccccCCCEE
Confidence            64     8999999997   4899999999999 799877 9999999999999999999996533  346778899999


Q ss_pred             Eeccccccc-----cCCCceeeEEEeech
Q 024619          195 MHSATKFIA-----GHSDVMAGVLAVKGE  218 (265)
Q Consensus       195 ~~s~sK~~~-----g~~g~~~G~v~~~~~  218 (265)
                      ++|.+|+|+     |+||  .|++.++++
T Consensus       686 ~~s~HKtf~~P~G~GGPg--~G~i~vr~~  712 (939)
T TIGR00461       686 HLNLHKTFCIPHGGGGPG--MGPIGVKSH  712 (939)
T ss_pred             EecCCccCCCCCCCCCCC--eEEEEEhhh
Confidence            999999888     6666  499988864

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=99.60  E-value=2.7e-14  Score=126.59  Aligned_cols=202  Identities=16%  Similarity=0.192  Sum_probs=132.2

Q ss_pred             cceeEeeccCCCCCC----CCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH
Q 024619            9 VSTLLMNFSNEFDPY----GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA   84 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~   84 (265)
                      .+.++++|. + +|+    |...|.+.++..-.... .   .+.......+...++++.+++++|.+.+++++||++|+.
T Consensus        35 ~g~~~lD~~-s-~~~~~~~Gh~~p~v~~a~~~~~~~-~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~SGs~A~e  108 (401)
T TIGR01885        35 EGKRYLDFL-S-AYSAVNQGHCHPKIVKALTEQAQK-L---TLSSRAFYNDVFGEFAEYVTKLFGYDKVLPMNTGAEAVE  108 (401)
T ss_pred             CCCEEEEcc-c-CHhhccCCCCCHHHHHHHHHHHHh-c---cccccccCCHHHHHHHHHHHhhcCCCEEEEeCccHHHHH
Confidence            346789998 4 354    44455555554322221 1   111111144678999999999999888999999998885


Q ss_pred             -HHHHh---------cCC-CCEEEEcCCCCCCh-HHHHHhhcC------CCC---eEEEeecCCCHHHHHhhcC---CCc
Q 024619           85 -AVTHL---------LGT-GEEIVAGDDLYGGT-DRLLSRVTP------KTG---VVVKRVNTCDLDEVASAIG---PWT  140 (265)
Q Consensus        85 -~~~~~---------~~~-g~~viv~~~~~~~~-~~~~~~~~~------~~g---~~~~~~~~~d~~~l~~~~~---~~~  140 (265)
                       ++..+         +.+ .+.|+....+|++. ...+ ....      ..+   ..+..++..|++++++.+.   +++
T Consensus       109 ~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~  187 (401)
T TIGR01885       109 TAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAI-SMSTDPDSRTNFGPYVPGFKKIPYNNLEALEEALEDHGPNV  187 (401)
T ss_pred             HHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHH-hCcCCcccccccCCCCCCceEeCCCCHHHHHHHHHhcCCCE
Confidence             44432         123 45677788888764 2222 1111      112   2345566678888888774   567


Q ss_pred             eEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CCCCCccEEEeccccccccCCCcee
Q 024619          141 KLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATKFIAGHSDVMA  210 (265)
Q Consensus       141 ~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~~~~~di~~~s~sK~~~g~~g~~~  210 (265)
                      .+|+++++++++|.+.+    +++|.++|++||+++|+||+|. .|..+.     ......|+++  ++|.+++ ++++.
T Consensus       188 ~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~~~~~~~~~~di~~--~gK~l~~-g~~~i  264 (401)
T TIGR01885       188 CAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCVDHENVKPDIVL--LGKALSG-GVYPV  264 (401)
T ss_pred             EEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHHhhcCCCCCEEE--eeccccC-CCCCc
Confidence            88999999999999976    9999999999999999999984 221121     1223567765  5799953 55678


Q ss_pred             eEEEeechhH
Q 024619          211 GVLAVKGERL  220 (265)
Q Consensus       211 G~v~~~~~~~  220 (265)
                      |+++.+++.+
T Consensus       265 g~v~~~~~i~  274 (401)
T TIGR01885       265 SAVLADDDVM  274 (401)
T ss_pred             EEEEEcHHHH
Confidence            9888775433

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=99.60  E-value=2.4e-14  Score=127.77  Aligned_cols=227  Identities=14%  Similarity=0.107  Sum_probs=141.5

Q ss_pred             cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCC-CceEEecchHHHHH-
Q 024619            9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA-DRALCFTSGMAALA-   84 (265)
Q Consensus         9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~-~~~i~~~~g~~al~-   84 (265)
                      .+.++++|.++  +..+|..+|.+.++..-+...   ..  .|. ..++...++++.+++.+.. +.++++++|++|+. 
T Consensus        46 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~---~~--~~~-~~~~~~~~lae~l~~~~~~~~~v~~~~sGseA~e~  119 (423)
T TIGR00713        46 DGNEYIDYVLSWGPLILGHAHPRVVEAVKEALER---GT--SYG-APTEAEILLAKEIISRVPSVEMVRFVNSGTEATMS  119 (423)
T ss_pred             CCCEEEEccccccccccCCCCHHHHHHHHHHHHh---CC--cCC-CCCHHHHHHHHHHHHhCCcccEEEEeCCHHHHHHH
Confidence            35678888643  334788887777775433222   11  232 1234577788888887643 46888888999985 


Q ss_pred             HHHHh--cCCCCEEEEcCCCCCChHHHHHhhc----------------CCCCeEEEeecCCCHHHHHhhcC---CCceEE
Q 024619           85 AVTHL--LGTGEEIVAGDDLYGGTDRLLSRVT----------------PKTGVVVKRVNTCDLDEVASAIG---PWTKLV  143 (265)
Q Consensus        85 ~~~~~--~~~g~~viv~~~~~~~~~~~~~~~~----------------~~~g~~~~~~~~~d~~~l~~~~~---~~~~~i  143 (265)
                      ++...  ...+++|+..+++|+++........                +..+..+..++..|++++++.+.   +++++|
T Consensus       120 Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aav  199 (423)
T TIGR00713       120 AVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYNDLEALEEVFEEYGEEIAGV  199 (423)
T ss_pred             HHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCCCCHHHHHHHHHHcCCcEEEE
Confidence            44322  3356899999999999753221100                00111234445568899988886   568899


Q ss_pred             EEe-cCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCCCCc-----CCCCCCccEEEeccccccccCCCceeeEE
Q 024619          144 WVE-SPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVL  213 (265)
Q Consensus       144 ~~~-~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~~~~~~di~~~s~sK~~~g~~g~~~G~v  213 (265)
                      +++ .++| +|.+.+    +++|.++|++||+++|+||+|.....+     .......|++  +++|.++  +|+++|++
T Consensus       200 i~ep~~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g~~~~~~~~~~~pDi~--t~sK~l~--~G~pig~v  274 (423)
T TIGR00713       200 IVEPVAGN-MGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVALGGAQEYFGVEPDLT--TLGKIIG--GGLPVGAF  274 (423)
T ss_pred             EEeCCCCC-CCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccCcchhHHHhCCCcchh--hhhhhhc--CCCceeee
Confidence            887 4555 898865    799999999999999999999532211     1122345754  7999994  56889999


Q ss_pred             EeechhHHHHHHH---HHHhccCCCChhHHHHHHhcc
Q 024619          214 AVKGERLAKELYF---LQNAEGSGLAPFDCWICLRGV  247 (265)
Q Consensus       214 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l  247 (265)
                      +++++.+ +.+..   .........++..++..+..|
T Consensus       275 ~~~~~i~-~~~~~~~~~~~~~T~~~~~~~~aaa~a~l  310 (423)
T TIGR00713       275 GGRREIM-ERLAPEGPVYQAGTLSGNPLAMAAGLATL  310 (423)
T ss_pred             eEHHHHH-HhhCcCCCeeeccCCCCCHHHHHHHHHHH
Confidence            8877543 32321   112223345565555544433

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>PLN02271 serine hydroxymethyltransferase

Probab=99.60  E-value=7.1e-14  Score=124.94  Aligned_cols=150  Identities=21%  Similarity=0.256  Sum_probs=113.8

Q ss_pred             HHHHhHhCCCc-----eEEecchHHHH-HHHHHhcCCCCEEEEcCCCCCChHHHHH-----hhcCCCCeEEEeec--C--
Q 024619           62 SLLAKLDKADR-----ALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLS-----RVTPKTGVVVKRVN--T--  126 (265)
Q Consensus        62 ~~l~~~~g~~~-----~i~~~~g~~al-~~~~~~~~~g~~viv~~~~~~~~~~~~~-----~~~~~~g~~~~~~~--~--  126 (265)
                      ++..++||.+.     .+-.-||+.|. .++.++++|||+|+..+..|+++.....     ..+...|..+..++  .  
T Consensus       201 era~~lF~~~~~~~gaNVQp~SGs~AN~aV~~ALl~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~  280 (586)
T PLN02271        201 ERALAAFGLDSEKWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNP  280 (586)
T ss_pred             HHHHHHhCCcccccccceeeccHHHHHHHHHHHhcCCCCEEEEecCCCCCchhcccccccccccccccceEEEEEccccc
Confidence            55567788552     45556898776 5788899999999998888877753321     11233454444433  3  


Q ss_pred             ----CCHHHHHh-hcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-----CCCCCCccEEEe
Q 024619          127 ----CDLDEVAS-AIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLELGADIVMH  196 (265)
Q Consensus       127 ----~d~~~l~~-~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~~~~~~di~~~  196 (265)
                          .|.+++++ +...++++|++.+..+|  ...|++++.++|+++|+++++|.+|..|.+.     +|.. ++|++++
T Consensus       281 ~~g~IDyd~lek~a~~~rPKLII~g~Sayp--r~~D~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~sP~~-~aDvvt~  357 (586)
T PLN02271        281 QTGYIDYDKLEEKALDFRPKILICGGSSYP--REWDYARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFD-YCDIVTS  357 (586)
T ss_pred             ccCccCHHHHHHHhhhcCCeEEEECchhcc--CcCCHHHHHHHHHHcCCEEEEECcccccccccCcCCCCCc-CCcEEEe
Confidence                28899998 55688999999887787  6789999999999999999999999988773     3444 4899999


Q ss_pred             ccccccccCCCceeeEEEeec
Q 024619          197 SATKFIAGHSDVMAGVLAVKG  217 (265)
Q Consensus       197 s~sK~~~g~~g~~~G~v~~~~  217 (265)
                      |.|||+.||.|   |+++.++
T Consensus       358 TTHKtLrGPrG---G~I~~r~  375 (586)
T PLN02271        358 TTHKSLRGPRG---GIIFYRK  375 (586)
T ss_pred             CCcccCCCCCc---eEEEecc
Confidence            99999999975   7777765

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.59  E-value=1.8e-14  Score=123.19  Aligned_cols=232  Identities=20%  Similarity=0.237  Sum_probs=155.0

Q ss_pred             CcceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhC-CCceEEecchHHHHH
Q 024619            8 GVSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK-ADRALCFTSGMAALA   84 (265)
Q Consensus         8 ~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g-~~~~i~~~~g~~al~   84 (265)
                      ..+.++|+|.+  .-..+|.+.|.++.+..-+....+......    -++...++.+.+.+..+ .+.+++.+||++|+.
T Consensus        39 ~~G~~YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h~sn~~----~~~~~~~la~~L~~~s~~~d~vff~NSGaEA~E  114 (404)
T COG4992          39 QQGREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWHVSNLF----YNEPQAELAEKLVELSPFADRVFFCNSGAEANE  114 (404)
T ss_pred             CCCCEeeeeccceeeeccCCCCHHHHHHHHHHHHHhhhccccc----CChHHHHHHHHHHhhCccccEEEEcCCcHHHHH
Confidence            44578888854  344599998888887654333322221112    23568899999999996 778999999999997


Q ss_pred             HHHHhc----C-C-CCEEEEcCCCCCChHHHHHh------hcCCCC---eEEEeecCCCHHHHHhhcCCCceEEEEecCC
Q 024619           85 AVTHLL----G-T-GEEIVAGDDLYGGTDRLLSR------VTPKTG---VVVKRVNTCDLDEVASAIGPWTKLVWVESPT  149 (265)
Q Consensus        85 ~~~~~~----~-~-g~~viv~~~~~~~~~~~~~~------~~~~~g---~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~  149 (265)
                      +.+.+.    . + ..+|+....+|++.......      ..+.++   -.+.++|..|++++++++.+++.+|+++..+
T Consensus       115 aAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfnDi~al~~ai~~~taAvivEPIQ  194 (404)
T COG4992         115 AALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFNDIEALEAAIDEDTAAVIVEPIQ  194 (404)
T ss_pred             HHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCCCCHHHHHHHhccCeEEEEEeccc
Confidence            544432    2 2 34677777777655311100      111111   1234556679999999999999999999999


Q ss_pred             CCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CCCCCccEEEeccccccccCCCceeeEEEeechh
Q 024619          150 NPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGER  219 (265)
Q Consensus       150 np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~  219 (265)
                      --.|.+.+    ++++.++|++||+++|.||+|. .|..+.     -....+||+  ++.|.++|  |+.+|.++.+ +.
T Consensus       195 GEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~e~~gV~PDI~--tlaK~LgG--G~PigA~la~-~~  269 (404)
T COG4992         195 GEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVEPDIL--TLAKALGG--GFPIGAMLAT-EE  269 (404)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHHHHHHhCCCCCEE--EeeccccC--CccceeeEEc-hh
Confidence            98888853    7999999999999999999984 333332     224457888  46999964  4888998887 44


Q ss_pred             HHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619          220 LAKELYFLQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      ...........++.+-+|..++.....++
T Consensus       270 ~~~~~~~G~HgSTfGGNpLacAv~~a~l~  298 (404)
T COG4992         270 IASAFTPGDHGSTFGGNPLACAVALAVLE  298 (404)
T ss_pred             hhhcCCCCcccCCCCcCHHHHHHHHHHHH
Confidence            44444444444555666766666444444

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.58  E-value=3e-14  Score=136.56  Aligned_cols=189  Identities=23%  Similarity=0.281  Sum_probs=140.7

Q ss_pred             CCCCCCCCCCCeeeccccccCCCCCCCCCccCCC------CChh-HHHHHHHHHhHhCCC--ceEEecchHHHHH-HHHH
Q 024619           19 EFDPYGALSTPLYQTATFKQPSATENGPYDYTRS------GNPT-RDALESLLAKLDKAD--RALCFTSGMAALA-AVTH   88 (265)
Q Consensus        19 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~------g~~~-~~~l~~~l~~~~g~~--~~i~~~~g~~al~-~~~~   88 (265)
                      +..|++...|++++...+... .   +...|+|.      |..+ ..++++.++++.|.+  +.-++.+++++.. ++++
T Consensus        82 g~G~y~~~~P~vi~~~i~~~~-~---~~t~ytPyQ~EisQG~Leal~~~Qt~la~LtG~~~anaSl~d~aTAa~ea~~~a  157 (954)
T PRK05367         82 GQGYYGTHTPPVILRNILENP-A---WYTAYTPYQPEISQGRLEALLNFQTMVADLTGLEIANASLLDEATAAAEAMALA  157 (954)
T ss_pred             CCCCCCCcCcHHHHHHHHhCc-c---hhhccCCCChHHHHHHHHHHHHHHHHHHHHHCCChhhccccccHHHHHHHHHHh
Confidence            455677777776644432222 1   23345554      4433 778889999999998  4556666666654 4444


Q ss_pred             h-cCC--CCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHH
Q 024619           89 L-LGT--GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA  165 (265)
Q Consensus        89 ~-~~~--g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a  165 (265)
                      + .++  +++|++++..|+++...|...++..|++++.++.++  ++.   .+++.++++..| |.+|.+.|+++|+++|
T Consensus       158 ~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev~~~~~~~--d~~---~~~~~~vlvq~p-~~~G~i~d~~~i~~~a  231 (954)
T PRK05367        158 KRVSKSKSNRFFVDDDVHPQTLDVLRTRAEPLGIEVVVGDAAK--ALD---HDDVFGVLLQYP-GTSGEVRDYTALIAAA  231 (954)
T ss_pred             hhhccCCCCEEEEcCccCHHHHHHHHHHHHhCCCEEEEecCcc--CCC---cccEEEEEEecC-CCCeeeccHHHHHHHH
Confidence            4 344  489999999999999998888899999999999754  111   345667777777 5699999999999999


Q ss_pred             HHcCCEEEEeCCc-CCCCCcCCCCCCccEEEeccccc-----cccCCCceeeEEEeechhH
Q 024619          166 HAHGALLLVDNSI-MSPVLSRPLELGADIVMHSATKF-----IAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       166 ~~~~~~li~D~~~-~~~~~~~~~~~~~di~~~s~sK~-----~~g~~g~~~G~v~~~~~~~  220 (265)
                      |++|+++++|..+ +.+....+.+.|+||++++.+||     ++|| +  .|+++++++..
T Consensus       232 h~~Gal~~vda~~~Al~~l~~pge~GaDi~vgs~qkfg~P~g~GGP-~--aGflavr~~~~  289 (954)
T PRK05367        232 HARGALVAVAADLLALTLLTPPGEMGADIAVGSAQRFGVPMGFGGP-H--AAYFAVRDAYK  289 (954)
T ss_pred             HHcCCEEEEEehhhhccCCCChhhcCCCEEEeeCcccCCCCCCCCC-C--EEEEEECHHHH
Confidence            9999999999877 55566678899999999999999     7666 4  69999987644

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=99.57  E-value=1.9e-13  Score=120.23  Aligned_cols=168  Identities=18%  Similarity=0.163  Sum_probs=125.1

Q ss_pred             CChhHHHHHHHHHhHhCCCceEEecchHHHHHHH-HHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeec------
Q 024619           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN------  125 (265)
Q Consensus        53 g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~~~-~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~------  125 (265)
                      |.|...++++.+++++|.+..+.+++|++|+.++ ...+++||.|  +...|....   .......|...+.++      
T Consensus        76 gd~s~~~LE~~vAe~lG~e~aV~v~sGTaAl~ll~~l~v~pGd~V--p~n~~f~Tt---~ahI~~~Ga~fvDi~~d~a~~  150 (460)
T PRK13237         76 GSRNFYHLEETVQEYYGFKHVVPTHQGRGAENLLSRIAIKPGQYV--PGNMYFTTT---RYHQELNGGIFVDIIIDEAHD  150 (460)
T ss_pred             CCCcHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhCCCCcCEE--CCccchHhh---HHHHHhCCcEEEeeecccccc
Confidence            4478999999999999999999999999998744 3458999965  444444333   232455676655442      


Q ss_pred             ---------CCCHHHHHhhcCC----CceEEEEecCCCCc-cccc---cHHHHHHHHHHcCCEEEEeCCcCCCCC-----
Q 024619          126 ---------TCDLDEVASAIGP----WTKLVWVESPTNPR-QQIC---DIRKIAEMAHAHGALLLVDNSIMSPVL-----  183 (265)
Q Consensus       126 ---------~~d~~~l~~~~~~----~~~~i~~~~~~np~-G~~~---~l~~i~~~a~~~~~~li~D~~~~~~~~-----  183 (265)
                               ..|++++++++++    ++++|.+..++|.. |...   ++++|.++|++||+.|++|.++..+..     
T Consensus       151 ~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~  230 (460)
T PRK13237        151 AQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCVENAYFIKE  230 (460)
T ss_pred             cccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcchhcChhhhcc
Confidence                     1289999999874    34567777788887 5554   689999999999999999999987621     


Q ss_pred             ------cCCC-------CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHH
Q 024619          184 ------SRPL-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ  228 (265)
Q Consensus       184 ------~~~~-------~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~  228 (265)
                            ....       ....|.+++|++|.+.++.   +|+++.+++.+.+..+...
T Consensus       231 re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~~---GG~i~t~D~eL~~~~r~~~  285 (460)
T PRK13237        231 REEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVNI---GGFLAMNDEELFDEAKELV  285 (460)
T ss_pred             cccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCCC---ceEEEECCHHHHHHHHHhc
Confidence                  1111       1237999999999997764   6999999998888776664

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=99.56  E-value=9.7e-14  Score=122.01  Aligned_cols=143  Identities=20%  Similarity=0.192  Sum_probs=97.8

Q ss_pred             eEEecchHHHHH-HHHHh--cCCCCEEEEcCCCCCChHHHHHhhcC------CCCe---EEEeecCCCHHHHHhhcCCCc
Q 024619           73 ALCFTSGMAALA-AVTHL--LGTGEEIVAGDDLYGGTDRLLSRVTP------KTGV---VVKRVNTCDLDEVASAIGPWT  140 (265)
Q Consensus        73 ~i~~~~g~~al~-~~~~~--~~~g~~viv~~~~~~~~~~~~~~~~~------~~g~---~~~~~~~~d~~~l~~~~~~~~  140 (265)
                      .++++||++|+. ++...  ..++++|++.+..|++..........      ..+.   .+...+..|++.+++.+.+++
T Consensus        87 ~~~~~SGseA~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~l~~~l~~~~  166 (375)
T PRK04260         87 AFFCNSGAEANEAAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAIFNDLNSVKALVNKNT  166 (375)
T ss_pred             EEEcCccHHHHHHHHHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEeCCCCHHHHHHhcCCCe
Confidence            467788888875 43332  34567888888888764322111111      1111   122234568999999888888


Q ss_pred             eEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCC-CCCcCC-----CCCCccEEEeccccccccCCCcee
Q 024619          141 KLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLSRP-----LELGADIVMHSATKFIAGHSDVMA  210 (265)
Q Consensus       141 ~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~~-~~~~~~-----~~~~~di~~~s~sK~~~g~~g~~~  210 (265)
                      ++|++++++|++|.+.+    ++++.++|+++|+++|+||+|.. +..+..     .....|++  ||||.++ + |+++
T Consensus       167 a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~~pdi~--t~sK~l~-~-G~~i  242 (375)
T PRK04260        167 AAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIEPDIF--TLAKGLA-N-GVPV  242 (375)
T ss_pred             EEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCCCCCEE--Eeccccc-C-Ccce
Confidence            99999999999998854    89999999999999999999852 211111     12346754  8999994 3 5889


Q ss_pred             eEEEeechh
Q 024619          211 GVLAVKGER  219 (265)
Q Consensus       211 G~v~~~~~~  219 (265)
                      |+++.+++.
T Consensus       243 g~~~~~~~~  251 (375)
T PRK04260        243 GAMLAKSSL  251 (375)
T ss_pred             EEEEEcHHH
Confidence            999988754

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.54  E-value=1.4e-13  Score=131.96  Aligned_cols=158  Identities=23%  Similarity=0.267  Sum_probs=119.9

Q ss_pred             hHHHHHHHHHhHhCCCceEEecchH-HHH-HHHHHh----cCCCC----EEEEcCCCCCChHHHHHhhcCCCCeEEEeec
Q 024619           56 TRDALESLLAKLDKADRALCFTSGM-AAL-AAVTHL----LGTGE----EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN  125 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~~~i~~~~g~-~al-~~~~~~----~~~g~----~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~  125 (265)
                      ...++++++++++|.++.-+..+|+ ++. ..++.+    .++|+    +|++++..|++..    ..++..|++++.++
T Consensus       543 ~i~e~q~~l~eltG~d~~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp----~sa~~~G~~vv~v~  618 (954)
T PRK05367        543 LIDQLEAWLAEITGYDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNP----ASAVMAGMKVVVVA  618 (954)
T ss_pred             HHHHHHHHHHHHHCCCCEEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhH----HHHHHCCCEEEEEC
Confidence            4888999999999999766666554 554 333222    24555    5999999998886    34467799999988


Q ss_pred             CC-----CHHHHHhhcCC---CceEEEEecCCCCcccc-ccHHHHHHHHHHcCCEEEEeCCcCCCC--CcCCCCCCccEE
Q 024619          126 TC-----DLDEVASAIGP---WTKLVWVESPTNPRQQI-CDIRKIAEMAHAHGALLLVDNSIMSPV--LSRPLELGADIV  194 (265)
Q Consensus       126 ~~-----d~~~l~~~~~~---~~~~i~~~~~~np~G~~-~~l~~i~~~a~~~~~~li~D~~~~~~~--~~~~~~~~~di~  194 (265)
                      .+     |++++++++.+   ++.+|++.+|++. |.+ .|+++|+++|+++|+++++|.++..+.  +..+.+.|.|++
T Consensus       619 ~d~~G~iD~~~L~~~i~~~~~~la~V~it~pst~-G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~~l~~pg~~GADi~  697 (954)
T PRK05367        619 CDENGNIDLDDLRAKAEEHADNLAAIMITYPSTH-GVFEETIREICEIVHEHGGQVYLDGANMNAQVGLARPGDIGADVS  697 (954)
T ss_pred             CCCCCCcCHHHHHHHHhccCCCeEEEEEEcCCCC-eeecCCHHHHHHHHHHcCCEEEEECcChhhccCCCChhhcCCCEE
Confidence            64     78999988854   5778888998875 554 789999999999999999999997553  345678899999


Q ss_pred             EeccccccccCCCce---eeEEEeech
Q 024619          195 MHSATKFIAGHSDVM---AGVLAVKGE  218 (265)
Q Consensus       195 ~~s~sK~~~g~~g~~---~G~v~~~~~  218 (265)
                      ++|+||||+.|.|.=   .|++.+++.
T Consensus       698 ~~s~HK~f~~P~G~GGPg~G~l~vr~~  724 (954)
T PRK05367        698 HLNLHKTFCIPHGGGGPGVGPIGVKAH  724 (954)
T ss_pred             EecCcccCCCCcCCCCCceEEEeeccc
Confidence            999999986444320   368877753

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=99.54  E-value=1.4e-13  Score=113.48  Aligned_cols=207  Identities=16%  Similarity=0.184  Sum_probs=140.6

Q ss_pred             cceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCC-CCccCCCCC---hhHHHHHHHHHhHhCCC-ceEEecchH-HH
Q 024619            9 VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENG-PYDYTRSGN---PTRDALESLLAKLDKAD-RALCFTSGM-AA   82 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~y~~~g~---~~~~~l~~~l~~~~g~~-~~i~~~~g~-~a   82 (265)
                      ..-.+|-+.  .+.+|..++....+.+-.....+... .-.+.+..-   ..-+.+-.+++.+.|+. ..++++.++ -.
T Consensus        28 lp~~viyLd--gnSLGa~p~~~~a~~~q~a~deW~~~lirsw~~a~~~W~~lp~~lgdklApLiGA~~~Evvv~dtts~n  105 (407)
T COG3844          28 LPGGVIYLD--GNSLGARPRAVTARLQQVATDEWGEGLIRSWNKAKADWFDLPERLGDKLAPLIGARAGEVVVTDTTSIN  105 (407)
T ss_pred             CCCCeEEee--ccccccCchHHHHHHHHHHHHHHHhhhhhhhcccCCchhhchhHHHHHhhhhhcCCCCceEEeCCcchH
Confidence            333445554  45688777555444332222222211 122222111   24667888899999987 455555555 44


Q ss_pred             HH-HHHHhc--CCCCEEEEcCC-CCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccH
Q 024619           83 LA-AVTHLL--GTGEEIVAGDD-LYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI  158 (265)
Q Consensus        83 l~-~~~~~~--~~g~~viv~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l  158 (265)
                      +. .+.+.+  ++|+.||+++. .++.-.+.....++..++....--.+.++++++++..++.+|++++.+..||+..|+
T Consensus       106 l~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~~~~~~~~~P~~~~~~~~dd~AvV~L~~V~y~TGql~dm  185 (407)
T COG3844         106 LFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLGIGYDLEGVIAPRALEEAITDDVAVVLLSHVNYKTGQLLDM  185 (407)
T ss_pred             HHHHHHHHhccCCCceEEeecCCCCCcchhhhcchhhhhcccccceeeeChHHHHHhhccceEEEEeccccccccceeeH
Confidence            54 555543  45888888766 444444444455555554322222347889999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEeccccccccCCCceeeEEEeec
Q 024619          159 RKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKG  217 (265)
Q Consensus       159 ~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~  217 (265)
                      .+|.+++++||++++.|-+|+.|.++ .....+.|+.+++.+|+++|.||...|+-+.++
T Consensus       186 ~aiT~~AH~~galv~wDLAHsaGavp~~Lh~~gaDfaigcsyKYLNgGPGapa~l~v~~~  245 (407)
T COG3844         186 RAITALAHQHGALVGWDLAHSAGAVPVDLHAAGADFAIGCSYKYLNGGPGAPAGLFVAPR  245 (407)
T ss_pred             HHHHHHHHhcCceEEeehhcccCCcceeecccCCCeeeeeeceeccCCCCCceeEEeccc
Confidence            99999999999999999999999987 444668999999999999999998666555443

>PRK13578 ornithine decarboxylase; Provisional

Probab=99.54  E-value=4.8e-14  Score=130.27  Aligned_cols=157  Identities=19%  Similarity=0.204  Sum_probs=122.3

Q ss_pred             hHHHHHHHHHhHhCCCceEEecchH-HHH-HHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC------
Q 024619           56 TRDALESLLAKLDKADRALCFTSGM-AAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------  127 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~~~i~~~~g~-~al-~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------  127 (265)
                      ...+.++..++.||++...++++|+ .++ .++++++.+||.|++++++|-+....   .+...|++++++...      
T Consensus       175 ~i~eAq~~AA~~fgAd~tyFlvNGTS~gn~a~i~a~~~~Gd~VLvdRN~HKSv~hg---aLiLsGa~PVYl~P~~n~~Gi  251 (720)
T PRK13578        175 AAKDAQKHAAKVFNADKTYFVLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNHHG---ALIQAGATPVYLETARNPFGF  251 (720)
T ss_pred             HHHHHHHHHHHHhCCCceEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHH---HHHHcCCeEEEeeccccccCC
Confidence            4889999999999999888888886 777 47888999999999999999887631   246789999998521      


Q ss_pred             ----C-----HHHHHhhcCCC----------ceEEEEecCCCCccccccHHHHHHH-HHHcCCEEEEeCCcCCCCC----
Q 024619          128 ----D-----LDEVASAIGPW----------TKLVWVESPTNPRQQICDIRKIAEM-AHAHGALLLVDNSIMSPVL----  183 (265)
Q Consensus       128 ----d-----~~~l~~~~~~~----------~~~i~~~~~~np~G~~~~l~~i~~~-a~~~~~~li~D~~~~~~~~----  183 (265)
                          +     .+.+++++.+.          .+++++++|+. .|.+.|+++|+++ ++.++ +|++||||+.=..    
T Consensus       252 ~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTY-dG~~ydi~~I~~~~~h~~~-~llvDEAhgah~~F~p~  329 (720)
T PRK13578        252 IGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTY-DGTIYNARQVVDKIGHLCD-YILFDSAWVGYEQFIPM  329 (720)
T ss_pred             cCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCC-cceeecHHHHHHHhhccCC-cEEEeCcchhhhccCcc
Confidence                3     45577777532          58899999955 8999999999999 67778 9999999862211    


Q ss_pred             -----cCCCCCCcc----EEEeccccccccCCCceeeEEEeechh
Q 024619          184 -----SRPLELGAD----IVMHSATKFIAGHSDVMAGVLAVKGER  219 (265)
Q Consensus       184 -----~~~~~~~~d----i~~~s~sK~~~g~~g~~~G~v~~~~~~  219 (265)
                           ....+.+.|    +++.|.||.+.+..  +++++..++..
T Consensus       330 ~~~~p~~al~~GaD~p~i~v~QStHKtL~alT--QaS~LHvk~~~  372 (720)
T PRK13578        330 MADCSPLLLELNENDPGIFVTQSVHKQQAGFS--QTSQIHKKDNH  372 (720)
T ss_pred             cccCChhhhhcCCCCCCeEEEEChhhcchhhh--hHhhhhcCCcc
Confidence                 123456788    99999999997764  46788776643

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=99.53  E-value=5.1e-13  Score=113.10  Aligned_cols=162  Identities=27%  Similarity=0.290  Sum_probs=119.6

Q ss_pred             hHHHH-HHHHHhHhCCC-ceEEecchHHHH-HHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeE--EEeecCC---
Q 024619           56 TRDAL-ESLLAKLDKAD-RALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV--VKRVNTC---  127 (265)
Q Consensus        56 ~~~~l-~~~l~~~~g~~-~~i~~~~g~~al-~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~---  127 (265)
                      ..|.+ .++.+++||++ ..+-..||++|. .+++++++|||+|+-.+-.+.++.... .-....|.-  .+..+++   
T Consensus        72 ~vE~laierak~LFga~~anVQPhSGs~AN~av~~All~pGDtimgm~l~~GGHltHg-~~v~~sG~~~~~v~Y~vd~et  150 (413)
T COG0112          72 EVEELAIERAKKLFGAEYANVQPHSGSQANQAVYLALLQPGDTIMGLDLSHGGHLTHG-SPVNFSGKLFNVVSYGVDPET  150 (413)
T ss_pred             HHHHHHHHHHHHHhCCCccccCCCCchHHHHHHHHHHcCCCCeEecccCCCCCcccCC-CCCCccceeEEeEeccccccc
Confidence            34433 35667889999 577888999776 588999999999998777776665322 112223333  3333322   


Q ss_pred             ---CHHHHHhhcC-CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcC-----CCCCcCCCCCCccEEEecc
Q 024619          128 ---DLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIM-----SPVLSRPLELGADIVMHSA  198 (265)
Q Consensus       128 ---d~~~l~~~~~-~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~-----~~~~~~~~~~~~di~~~s~  198 (265)
                         |.|++++... .++++|+.-....|  ...|.+++.++|++.|+++++|.+|-     .|.+++|... .|++++|.
T Consensus       151 ~~IDyD~~~k~a~e~kPK~ii~G~SaY~--r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~~-AdvVTtTT  227 (413)
T COG0112         151 GLIDYDEVEKLAKEVKPKLIIAGGSAYS--RPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLPH-ADVVTTTT  227 (413)
T ss_pred             CccCHHHHHHHHHHhCCCEEEECccccc--cccCHHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCCCc-cceEeCCc
Confidence               8889888875 67888876443332  46799999999999999999999994     5566788887 99999999


Q ss_pred             ccccccCCCceeeEEEeechhHHHHH
Q 024619          199 TKFIAGHSDVMAGVLAVKGERLAKEL  224 (265)
Q Consensus       199 sK~~~g~~g~~~G~v~~~~~~~~~~~  224 (265)
                      ||+|.||.   +|+|.++++++.+..
T Consensus       228 HKTlrGPr---GG~Il~~~eel~kki  250 (413)
T COG0112         228 HKTLRGPR---GGIILTNDEELAKKI  250 (413)
T ss_pred             ccCCCCCC---ceEEEeccHHHHHHh
Confidence            99999986   699999886665543

>PLN00144 acetylornithine transaminase

Probab=99.53  E-value=3.2e-13  Score=118.79  Aligned_cols=227  Identities=16%  Similarity=0.123  Sum_probs=144.6

Q ss_pred             CcceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CChhHHHHHHHHHhHhCCCceEEecchHHHHH
Q 024619            8 GVSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLDKADRALCFTSGMAALA   84 (265)
Q Consensus         8 ~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~   84 (265)
                      ..+.++++|.++  +..+|...|.+..+..-+....    .+ ++.. .++...++.+.+.+..+.+.+.+.+||++|+.
T Consensus        12 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~----~~-~~~~~~~~~~~~la~~l~~~~~~~~v~f~~sGseA~e   86 (382)
T PLN00144         12 VEGKEYLDMAAGIAVNALGHGDPDWVKAVAEQAGTL----AH-VSNVYHTIPQVELAKRLVASSFADRVFFCNSGTEANE   86 (382)
T ss_pred             CCCCEEEECCcCHHhccCCCCCHHHHHHHHHHHHhc----CC-ccccccCHHHHHHHHHHHhcCCCCeEEEeCCcHHHHH
Confidence            345789999643  4469998888777765333221    11 1111 34567788888888776677889999999885


Q ss_pred             -HHHHh---cC------C------CCEEEEcCCCCCChHHHHHhhcCCC------C---eEEEeecCCCHHHHHhhcC-C
Q 024619           85 -AVTHL---LG------T------GEEIVAGDDLYGGTDRLLSRVTPKT------G---VVVKRVNTCDLDEVASAIG-P  138 (265)
Q Consensus        85 -~~~~~---~~------~------g~~viv~~~~~~~~~~~~~~~~~~~------g---~~~~~~~~~d~~~l~~~~~-~  138 (265)
                       ++...   ..      +      ..+|+....+|++............      +   ..+..++..|++.+++.+. .
T Consensus        87 ~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~  166 (382)
T PLN00144         87 AAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEYGNLEAARKLIQKG  166 (382)
T ss_pred             HHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCCCCHHHHHHhcCCC
Confidence             33322   11      0      2568888888888754322211110      0   1134556668999998885 5


Q ss_pred             CceEEEEecCCCCccccc--c--HHHHHHHHHHcCCEEEEeCCcCC-CCCcC-----CCCCCccEEEeccccccccCCCc
Q 024619          139 WTKLVWVESPTNPRQQIC--D--IRKIAEMAHAHGALLLVDNSIMS-PVLSR-----PLELGADIVMHSATKFIAGHSDV  208 (265)
Q Consensus       139 ~~~~i~~~~~~np~G~~~--~--l~~i~~~a~~~~~~li~D~~~~~-~~~~~-----~~~~~~di~~~s~sK~~~g~~g~  208 (265)
                      ++++|+++..+||.|...  .  +++|.++|++||+++|+||+|.. +..+.     ......|  +.+++|.++ + |+
T Consensus       167 ~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~PD--i~t~sK~l~-~-G~  242 (382)
T PLN00144        167 KTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVEPD--IMTLAKPLA-G-GL  242 (382)
T ss_pred             CeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCCCCC--EEEeccccc-C-Cc
Confidence            688999998899955543  3  79999999999999999999862 22221     2334567  557899994 3 58


Q ss_pred             eeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHH
Q 024619          209 MAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL  244 (265)
Q Consensus       209 ~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (265)
                      ++|+++.+++.. +.+...........++..+....
T Consensus       243 pig~v~~~~~~~-~~~~~~~~~~T~~~~pl~~aaa~  277 (382)
T PLN00144        243 PIGAVLVTEKVA-SAINPGDHGSTFAGGPLVCNAAL  277 (382)
T ss_pred             ceEEEEEcHHHH-hccCCCCCCCCCCCCHHHHHHHH
Confidence            999999876543 32222122333444555555544

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.52  E-value=1.5e-13  Score=129.39  Aligned_cols=158  Identities=20%  Similarity=0.253  Sum_probs=122.9

Q ss_pred             CccCC---C-CCh-hHHHHHHHHHhHhCCCceEEec-chHHHH-HHHHHhc----C---C-CCEEEEcCCCCCChHHHHH
Q 024619           47 YDYTR---S-GNP-TRDALESLLAKLDKADRALCFT-SGMAAL-AAVTHLL----G---T-GEEIVAGDDLYGGTDRLLS  111 (265)
Q Consensus        47 ~~y~~---~-g~~-~~~~l~~~l~~~~g~~~~i~~~-~g~~al-~~~~~~~----~---~-g~~viv~~~~~~~~~~~~~  111 (265)
                      ..|.+   . |.. ...++++.+++++|.+.+-+.. +|+++- ..++++-    .   + .++|+++.-.|+++.    
T Consensus       530 hPyqp~e~sQG~lq~i~elq~~l~eLtGmd~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNp----  605 (954)
T PRK12566        530 HPFAPREQAEGYRAMIDELEAWLCAITGFDAICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNP----  605 (954)
T ss_pred             CCCCchhhhcCHHHHHHHHHHHHHHHHCCCeEeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCH----
Confidence            45665   2 664 5999999999999999766655 566665 3444431    1   2 467889998887775    


Q ss_pred             hhcCCCCeEEEeecCC-----CHHHHHhhcC---CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCC
Q 024619          112 RVTPKTGVVVKRVNTC-----DLDEVASAIG---PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL  183 (265)
Q Consensus       112 ~~~~~~g~~~~~~~~~-----d~~~l~~~~~---~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~  183 (265)
                      ..+...|++++.++.+     |++++++.+.   +++++|++.+|++-.+...++++|+++|+++|+++++|.++..+..
T Consensus       606 asa~~~GieVv~Vp~D~~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~~  685 (954)
T PRK12566        606 ASAQMAGMRVVIVECDPDGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNAQV  685 (954)
T ss_pred             HHHHHCCCEEEEeccCCCCCcCHHHHHHHhhccCCCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhhcc
Confidence            3356679999999874     8999999986   6788999999987655556799999999999999999999975444


Q ss_pred             --cCCCCCCccEEEeccccccccCCCc
Q 024619          184 --SRPLELGADIVMHSATKFIAGHSDV  208 (265)
Q Consensus       184 --~~~~~~~~di~~~s~sK~~~g~~g~  208 (265)
                        ..+.+.|.|+++++++|||++|.|.
T Consensus       686 ~l~~Pg~~GADi~~~s~HKtf~~P~G~  712 (954)
T PRK12566        686 GLARPADIGADVSHMNLHKTFCIPHGG  712 (954)
T ss_pred             CCCChhhcCCCEEEecCCcccCcCccC
Confidence              4568899999999999999877764

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.52  E-value=2.4e-13  Score=121.38  Aligned_cols=229  Identities=17%  Similarity=0.146  Sum_probs=142.3

Q ss_pred             cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHh-CCCceEEecchHHHHH-
Q 024619            9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD-KADRALCFTSGMAALA-   84 (265)
Q Consensus         9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~-g~~~~i~~~~g~~al~-   84 (265)
                      .+.++++|.++  +.++|..+|.+..+..-....    ....|.  ..+...++++++.+.+ +.+.+.++++|++|+. 
T Consensus        48 dG~~~lD~~~g~~~~~lGh~~p~i~~a~~~~~~~----~~~~~~--~~~~~~~la~~L~~~~~~~~~v~~~~sGseA~e~  121 (426)
T PRK00062         48 DGNEYIDYVGSWGPMILGHAHPEVVEAVIEAAEK----GLSFGA--PTELEVELAELVIELVPSIEMVRMVNSGTEATMS  121 (426)
T ss_pred             CCCEEEEcccchhhhhcCCCCHHHHHHHHHHHHh----CCcCCC--CCHHHHHHHHHHHHhCCCCCEEEEecCHHHHHHH
Confidence            45688999743  367899766666554322221    111111  3356778888888875 4567888899999986 


Q ss_pred             HHHHh--cCCCCEEEEcCCCCCChHHHHHhhcC---------C-CCe------EEEeecCCCHHHHHhhcC---CCceEE
Q 024619           85 AVTHL--LGTGEEIVAGDDLYGGTDRLLSRVTP---------K-TGV------VVKRVNTCDLDEVASAIG---PWTKLV  143 (265)
Q Consensus        85 ~~~~~--~~~g~~viv~~~~~~~~~~~~~~~~~---------~-~g~------~~~~~~~~d~~~l~~~~~---~~~~~i  143 (265)
                      ++...  ...+++|+..+++|+++.........         . .+.      ....++..|++++++.+.   +++++|
T Consensus       122 Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aai  201 (426)
T PRK00062        122 AIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAPYNDLEAVEELFEEYGDEIAAV  201 (426)
T ss_pred             HHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcCCCCHHHHHHHHHhCCCcEEEE
Confidence            44432  23367899999999997532211100         0 011      123344567888887774   468899


Q ss_pred             EEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCCCCc-----CCCCCCccEEEeccccccccCCCceeeEEE
Q 024619          144 WVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVLA  214 (265)
Q Consensus       144 ~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~~~~~~di~~~s~sK~~~g~~g~~~G~v~  214 (265)
                      +++...+.+|.+.+    +++|.++|++||+++|+||+|.....+     .......|+  .+++|.++  .|+++|+++
T Consensus       202 ivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~g~~~~~~~~~~~pDi--~~~gK~l~--~G~p~ga~~  277 (426)
T PRK00062        202 IVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRVALGGAQGYYGVTPDL--TTLGKIIG--GGLPVGAFG  277 (426)
T ss_pred             EEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhccccCCccHHHHhCCCcch--HhhhhHhh--CCCcceeee
Confidence            99988888999977    899999999999999999999622111     111223565  57899995  356678887


Q ss_pred             eechhHHHHHHH---HHHhccCCCChhHHHHHHhccC
Q 024619          215 VKGERLAKELYF---LQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       215 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      .+++ +.+.+..   .........++..+...+..|+
T Consensus       278 ~~~~-i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~  313 (426)
T PRK00062        278 GRRE-IMEQLAPLGPVYQAGTLSGNPLAMAAGLATLK  313 (426)
T ss_pred             EHHH-HHHhhccCCCceecccCcCCHHHHHHHHHHHH
Confidence            7654 4343321   1122233455555555444443

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=99.51  E-value=2.8e-13  Score=117.07  Aligned_cols=202  Identities=17%  Similarity=0.203  Sum_probs=138.2

Q ss_pred             ceeEeeccCCCCC--CCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCC-CceEEecchHHHHH-H
Q 024619           10 STLLMNFSNEFDP--YGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA-DRALCFTSGMAALA-A   85 (265)
Q Consensus        10 ~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~-~~~i~~~~g~~al~-~   85 (265)
                      ++++|+|..++..  +|..+|++..+..-+..     .+..|+... ..--++.+.+.+++.. +.+-+++||++|.. +
T Consensus        52 Gn~YIDy~~~~Gp~ilGH~~p~V~~Av~~~l~-----~G~~fg~Pt-e~Ei~~Aell~~~~p~~e~vrfvnSGTEAtmsA  125 (432)
T COG0001          52 GNEYIDYVLGWGPLILGHAHPAVVEAVQEQLE-----RGLSFGAPT-ELEVELAELLIERVPSIEKVRFVNSGTEATMSA  125 (432)
T ss_pred             CCEeeehhccCcccccCCCCHHHHHHHHHHHH-----hcCCCCCCC-HHHHHHHHHHHHhcCcccEEEEecchhHHHHHH
Confidence            4678888644444  88888887777653332     234444331 2244566777777766 78999999998864 4


Q ss_pred             HHHh--cCCCCEEEEcCCCCCChHHHHHhhcC----------CCC------eEEEeecCCCHHHHHhhcC---CCceEEE
Q 024619           86 VTHL--LGTGEEIVAGDDLYGGTDRLLSRVTP----------KTG------VVVKRVNTCDLDEVASAIG---PWTKLVW  144 (265)
Q Consensus        86 ~~~~--~~~g~~viv~~~~~~~~~~~~~~~~~----------~~g------~~~~~~~~~d~~~l~~~~~---~~~~~i~  144 (265)
                      ++..  +...|+|+..+.+|+.....+.--+.          ..|      ..++.++.+|++.+++++.   ++.++|+
T Consensus       126 iRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yND~~al~~~~~~~g~~IAaVI  205 (432)
T COG0001         126 IRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYNDLEALEEAFEEYGDDIAAVI  205 (432)
T ss_pred             HHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecCCCHHHHHHHHHHcCCcEEEEE
Confidence            4332  55578999999999888755421111          011      1244455668999988886   4789999


Q ss_pred             EecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCC-----CCcCCCCCCccEEEeccccccccCCCceeeEEEe
Q 024619          145 VESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSP-----VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAV  215 (265)
Q Consensus       145 ~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~~~-----~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~  215 (265)
                      ++....-.|.+.|    +++|.++|+++|+++|+||+.-..     -........+|+.  ++.|.++|  |+.+|++.+
T Consensus       206 vEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~gGaq~~~gi~PDlt--tlGKiIGG--GlP~ga~gG  281 (432)
T COG0001         206 VEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGAQGYYGVEPDLT--TLGKIIGG--GLPIGAFGG  281 (432)
T ss_pred             eccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCcccccccCcCcchh--hhhhhhcC--Ccceeeecc
Confidence            9887666788865    799999999999999999997422     2223344567887  57999854  688999987


Q ss_pred             echhHH
Q 024619          216 KGERLA  221 (265)
Q Consensus       216 ~~~~~~  221 (265)
                      +.+.+.
T Consensus       282 r~eiM~  287 (432)
T COG0001         282 RAEIME  287 (432)
T ss_pred             HHHHHh
Confidence            775543

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=99.51  E-value=1.2e-12  Score=110.15  Aligned_cols=172  Identities=27%  Similarity=0.402  Sum_probs=116.8

Q ss_pred             hHHHHHHHHHhHhCCCceEE---ecchHHHHH-HHHHhcCCCCEEE-EcCCCCCChHHHH------HhhcCCCCeEEEee
Q 024619           56 TRDALESLLAKLDKADRALC---FTSGMAALA-AVTHLLGTGEEIV-AGDDLYGGTDRLL------SRVTPKTGVVVKRV  124 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~~~i~---~~~g~~al~-~~~~~~~~g~~vi-v~~~~~~~~~~~~------~~~~~~~g~~~~~~  124 (265)
                      -|+.+++-+++.||+++.++   +.||+.|++ ++..+++|||+++ +...-|.......      ...++.+|++...+
T Consensus        55 GRd~le~iyA~vfgaE~ALVRpq~vSGTHAi~~~Lfg~LrpGD~ll~~tG~PYDTL~~VIG~~g~~~GSL~e~Gi~Y~~v  134 (403)
T PF06838_consen   55 GRDKLERIYADVFGAEDALVRPQFVSGTHAIALALFGVLRPGDELLSITGKPYDTLEEVIGIRGNGPGSLKEFGIKYREV  134 (403)
T ss_dssp             HHHHHHHHHHHHCT-SEEEEETTS-SHHHHHHHHHHHH--TT-EEEESSSS--CCHHHHHTSSSSSSSSTGGGT-EEEE-
T ss_pred             cHHHHHHHHHHHhCchhhhhcccccchHHHHHHHHHhcCCCCCeEEEcCCCchhhHHHHhCCCCCCCCChHHhCceeEEE
Confidence            49999999999999998877   558999997 8899999999988 4555666555443      12345688999999


Q ss_pred             cCC-----CHHHHHhhcCCCceEEEEecCC----CCccccccHHHHHHHHHHc--CCEEEEeCCcCCCCC-cCCCCCCcc
Q 024619          125 NTC-----DLDEVASAIGPWTKLVWVESPT----NPRQQICDIRKIAEMAHAH--GALLLVDNSIMSPVL-SRPLELGAD  192 (265)
Q Consensus       125 ~~~-----d~~~l~~~~~~~~~~i~~~~~~----np~G~~~~l~~i~~~a~~~--~~~li~D~~~~~~~~-~~~~~~~~d  192 (265)
                      ++.     |.+.+++++++++++|++--..    -|+=.+.+++++++++|+.  ++++++|.+|+...- ..|.+.|.|
T Consensus       135 ~L~~dg~~D~~~i~~~~~~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~~EP~~vGAD  214 (403)
T PF06838_consen  135 PLTEDGTIDWEAIKKALKPNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVETQEPTEVGAD  214 (403)
T ss_dssp             -B-TTSSB-HHHHHHHHHTTEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSSS-GGGGT-S
T ss_pred             eecCCCCcCHHHHHHhhccCceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceeccccCccccchh
Confidence            854     8999999999999999984331    1222335678888888875  789999999997654 578899999


Q ss_pred             EEEeccccccccCCCceeeEEEeechhHHHHHHHH
Q 024619          193 IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL  227 (265)
Q Consensus       193 i~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~  227 (265)
                      ++.+|+=|..+|.----+|+++++++.+.....++
T Consensus       215 l~aGSLIKNpGGgiAptGGYIaGr~~lVe~~a~RL  249 (403)
T PF06838_consen  215 LMAGSLIKNPGGGIAPTGGYIAGRKDLVERAAYRL  249 (403)
T ss_dssp             EEEEETTSGGGTTT-SS-EEEEESHHHHHHHHHHH
T ss_pred             heeccceeCCCCCccCcCCEEechHHHHHHHHhhh
Confidence            99999999876543334799999987765544333

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=99.51  E-value=1.3e-13  Score=124.88  Aligned_cols=160  Identities=20%  Similarity=0.179  Sum_probs=113.6

Q ss_pred             hhHHHHHHHHHhHhCC-------------C--ceEEecchHHHH-HHHHH----hcC----------------------C
Q 024619           55 PTRDALESLLAKLDKA-------------D--RALCFTSGMAAL-AAVTH----LLG----------------------T   92 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~-------------~--~~i~~~~g~~al-~~~~~----~~~----------------------~   92 (265)
                      ..-+.+.++++++++.             +  ..+++++|++|+ .++..    .+.                      +
T Consensus       129 ~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~~~  208 (522)
T TIGR03799       129 PLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYGYD  208 (522)
T ss_pred             HHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhhhhccCC
Confidence            4466677888888641             1  257777888664 33322    121                      1


Q ss_pred             CCEEEEcCCCCCChHHHHHhhcCCCCe---EEEeecCC-----CHHHHHhhcC----CCceEEEEe--cCCCCccccccH
Q 024619           93 GEEIVAGDDLYGGTDRLLSRVTPKTGV---VVKRVNTC-----DLDEVASAIG----PWTKLVWVE--SPTNPRQQICDI  158 (265)
Q Consensus        93 g~~viv~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~-----d~~~l~~~~~----~~~~~i~~~--~~~np~G~~~~l  158 (265)
                      +..|++++-+|.+..    +.++..|+   +++.++.+     |++++++++.    ++++.+.+.  ..++.+|.+.|+
T Consensus       209 ~~~v~~S~~~H~S~~----kaa~~lglg~~~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDpl  284 (522)
T TIGR03799       209 GLAILVSERGHYSLG----KAADVLGIGRDNLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDPL  284 (522)
T ss_pred             ceEEEECCCchHHHH----HHHHHcCCCcccEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCCH
Confidence            346888888988876    44444555   56666654     7899988875    455544444  556789999999


Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCCCCcCC------CC-CCccEEEeccccccccCCCceeeEEEeechhH
Q 024619          159 RKIAEMAHAHGALLLVDNSIMSPVLSRP------LE-LGADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       159 ~~i~~~a~~~~~~li~D~~~~~~~~~~~------~~-~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                      ++|.++|+++|+++++|.+|+.+....+      .. .++|.++.|.|||+.+|.|  +|+++.++...
T Consensus       285 ~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~g--~G~llvr~~~~  351 (522)
T TIGR03799       285 DEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMG--AGMVLFKDPAL  351 (522)
T ss_pred             HHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCcc--cEEEEEeCHHH
Confidence            9999999999999999999986654322      22 2689999999999999988  58888887554

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=99.51  E-value=8.1e-13  Score=107.89  Aligned_cols=179  Identities=21%  Similarity=0.321  Sum_probs=121.1

Q ss_pred             CCccCCC-CCh-hHHHHHHHHHhHhCCC---ceEEecchH-HHHHHHHHhc----CCCC--EEE-EcCCCCCChHHHH--
Q 024619           46 PYDYTRS-GNP-TRDALESLLAKLDKAD---RALCFTSGM-AALAAVTHLL----GTGE--EIV-AGDDLYGGTDRLL--  110 (265)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~~~g~-~al~~~~~~~----~~g~--~vi-v~~~~~~~~~~~~--  110 (265)
                      -..|... |.. +.+++...+.+.+|-+   ..+.+|+|+ .+...+..++    ..|+  .|+ --.|.|.+|....  
T Consensus        67 ~cnY~~pQG~~~li~ala~~l~~~ygwnit~~NIalTnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l~  146 (417)
T COG3977          67 LCNYDGPQGKAVLIDALAKMLRREYGWNITAQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGLE  146 (417)
T ss_pred             HhcCCCCcchhHHHHHHHHHHHHHhCCCCccceeeecCCccchHHHHHHHhcCccCCCcceeEeeccChhhccccccccC
Confidence            3456555 774 6999999999998754   588888887 5555444443    2343  344 4678888774221  


Q ss_pred             HhhcCCCCeEEEeec------CCCHHHHHhhcCCCceEEEEecCCCCccccc---cHHHHHHHHHHcCCEEEEeCCcCCC
Q 024619          111 SRVTPKTGVVVKRVN------TCDLDEVASAIGPWTKLVWVESPTNPRQQIC---DIRKIAEMAHAHGALLLVDNSIMSP  181 (265)
Q Consensus       111 ~~~~~~~g~~~~~~~------~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~---~l~~i~~~a~~~~~~li~D~~~~~~  181 (265)
                      .+.+-...-++..++      ..|++++.  +.+++.+|+++.|.||||.+.   .+.+|-++|++||+++++|.+|+.+
T Consensus       147 ~d~fVs~kP~iel~~~g~FKY~vDF~~l~--i~e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~P  224 (417)
T COG3977         147 EDLFVSAKPNIELLPAGQFKYHVDFEHLH--IGESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVP  224 (417)
T ss_pred             ccceeeccCCcccccccceeeccCHHHcc--cccccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCC
Confidence            011111111111111      23677764  457899999999999999883   5889999999999999999999976


Q ss_pred             CCc------CCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHH
Q 024619          182 VLS------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN  229 (265)
Q Consensus       182 ~~~------~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~  229 (265)
                      ...      .+.-.+.-+.|.|+||.  |.||.|+|.++...+ +.+.+..++.
T Consensus       225 FP~iifsd~~~~w~~NiilC~SLSK~--GLPG~R~GIiIane~-viqaitnmn~  275 (417)
T COG3977         225 FPGIIFSDATPLWNENIILCMSLSKL--GLPGSRCGIIIANEK-VIQAITNMNG  275 (417)
T ss_pred             CCceecccccccCCCCEEEEeehhhc--CCCCcceeEEEccHH-HHHHHHhccc
Confidence            543      23344567999999994  788999999987664 4454555443

>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.50  E-value=4.2e-14  Score=118.97  Aligned_cols=200  Identities=16%  Similarity=0.184  Sum_probs=147.4

Q ss_pred             CcceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC--CC-hhHHHHHHHHHhHhCCCceEEecchHHHHH
Q 024619            8 GVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS--GN-PTRDALESLLAKLDKADRALCFTSGMAALA   84 (265)
Q Consensus         8 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~--g~-~~~~~l~~~l~~~~g~~~~i~~~~g~~al~   84 (265)
                      ..+..++||. +++|+|....+.+-............ +.+-+|.  |+ ..+-.+++.+++++|+++.++++.|.+++.
T Consensus        91 i~G~~~~N~a-S~NfL~l~~~~~ike~a~~~lrkyGv-GsCGPrGFYGt~DvHldlE~~iakF~G~E~aivYs~gF~ti~  168 (467)
T KOG1358|consen   91 IDGKDVLNFA-SANFLGLIENEEIKEEASFTLRKYGV-GSCGPRGFYGTIDVHLDLEKRIAKFMGTEDAIVYSYGFSTIE  168 (467)
T ss_pred             ecCceeeccc-chhhhhhcccHHHHHHHHHHHHHhCC-CCcCCCcccccceeecccHHHHHHhhCCcceeeeccccchhh
Confidence            3456799999 99999998776655443221111111 1222222  44 468899999999999999999999998885


Q ss_pred             -HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCC-------------ceEEEEecCCC
Q 024619           85 -AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW-------------TKLVWVESPTN  150 (265)
Q Consensus        85 -~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~-------------~~~i~~~~~~n  150 (265)
                       ++.++.+.||.|.+++.......    .-.+...-++.++...|.++++..+.+.             .+.|+++...-
T Consensus       169 S~ipafsKrGDIi~~de~~nfaIq----~GlqlSRS~i~~Fkhndm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~  244 (467)
T KOG1358|consen  169 SAIPAFSKRGDIIFVDEAVNFAIQ----KGLQLSRSTISYFKHNDMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYA  244 (467)
T ss_pred             hcchhhhccCcEEEEehhhhHHHH----HHHhhhhheeEEecCCCHHHHHHhccCcchhhhhccccccceEEEEEEeecc
Confidence             89999999999988877665444    3334455577788888888887665422             24678899988


Q ss_pred             CccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCC----------CCCccEEEeccccccccCCCceeeEEEeec
Q 024619          151 PRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPL----------ELGADIVMHSATKFIAGHSDVMAGVLAVKG  217 (265)
Q Consensus       151 p~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~----------~~~~di~~~s~sK~~~g~~g~~~G~v~~~~  217 (265)
                      ++|.+.|+++|+++..++...+|.||.++.|..+...          ..+.|++++|+.-.+++.    +|+.+++.
T Consensus       245 N~g~i~pl~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~~alas~----GgFc~G~~  317 (467)
T KOG1358|consen  245 NTGDICPLPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETALASG----GGFCAGKS  317 (467)
T ss_pred             CCCcccccHHHHHHHhhheEEEEEecccccccccccCccccccCCCCccceeeeeeccccccccc----Cceeecce
Confidence            8999999999999999999999999999988775211          135799999999988543    46666544

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=99.50  E-value=4.5e-13  Score=114.32  Aligned_cols=202  Identities=27%  Similarity=0.313  Sum_probs=155.6

Q ss_pred             eEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC------CChh-HHHHHHHHHhHhCCC--ceEEecchHHH
Q 024619           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS------GNPT-RDALESLLAKLDKAD--RALCFTSGMAA   82 (265)
Q Consensus        12 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~------g~~~-~~~l~~~l~~~~g~~--~~i~~~~g~~a   82 (265)
                      .+.+|- +..|++..-||++.+.....+ .   +...|+|+      |... .-+.+..++++.|.+  +.-.+..++++
T Consensus        75 ~~~sfi-G~GyY~~~~P~vI~rnile~p-e---wyTaYTPYQpEISQGrLqaLfefQtlv~dLTGm~VANASm~DeaTAa  149 (450)
T COG0403          75 VFTSFI-GAGYYDTYTPPVILRNILENP-E---WYTAYTPYQPEISQGRLEALFEFQTLVADLTGLDVANASMLDEATAA  149 (450)
T ss_pred             hhhhhc-cCcccCCcCcHHHHHHhhcCc-c---ccccCCCCchhhhhHHHHHHHHHHHHHHHHhCCCcccchhhhhHHHH
Confidence            455666 778999999998886543322 2   44456655      3333 677888999999988  56666666533


Q ss_pred             H-HHHH--Hhc-CCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCcc-cccc
Q 024619           83 L-AAVT--HLL-GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQ-QICD  157 (265)
Q Consensus        83 l-~~~~--~~~-~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G-~~~~  157 (265)
                      - ++++  ..- ++.++++++...|+.+...++..++-.|++++.++.+|.+++++....++.++++..|+ ..| ...|
T Consensus       150 AEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~d~~~l~~~~~~~~~gv~vQyP~-~~G~~~~d  228 (450)
T COG0403         150 AEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDADDLDDLESADDGDVFGVLVQYPN-TFGIVEED  228 (450)
T ss_pred             HHHHHHHHHhhcCcCceEEecCCCCHHHHHHHHhhcccCceEEEEeccchhhhhhhccccCeEEEEEecCC-CCCccchh
Confidence            3 2333  332 33689999999999999999999999999999999999999999833578999999996 477 6678


Q ss_pred             HHHHHHHHHHcCCEEEEe-CCcCCCCCcCCCCCCccEEEecccc-----ccccCCCceeeEEEeechhHHH
Q 024619          158 IRKIAEMAHAHGALLLVD-NSIMSPVLSRPLELGADIVMHSATK-----FIAGHSDVMAGVLAVKGERLAK  222 (265)
Q Consensus       158 l~~i~~~a~~~~~~li~D-~~~~~~~~~~~~~~~~di~~~s~sK-----~~~g~~g~~~G~v~~~~~~~~~  222 (265)
                      +++|.+.+|++|.++++= |.-+.+.+..|.++|.||++++.+.     .|+||.   .|+..++++..++
T Consensus       229 ~~~l~~~~h~~~al~~v~aDplaL~LL~pPGe~GADIvvG~~QrfGvPmgfGGPh---ag~fA~~~~~~R~  296 (450)
T COG0403         229 LRALIEAAHSAGALVIVAADPLALGLLKPPGEFGADIVVGSAQRFGVPMGFGGPH---AGYFAVKDEFKRQ  296 (450)
T ss_pred             HHHHHHHHhhcCCEEEEEechhHhhccCCccccCCceEEecCcccCCCcCCCCcc---eeeeeEhHhHhhc
Confidence            999999999999876654 6677888889999999999999887     676665   6899888866543

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=99.50  E-value=7.8e-13  Score=117.17  Aligned_cols=233  Identities=14%  Similarity=0.108  Sum_probs=139.3

Q ss_pred             CcceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhC-CCceEEecchHHHHH
Q 024619            8 GVSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK-ADRALCFTSGMAALA   84 (265)
Q Consensus         8 ~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g-~~~~i~~~~g~~al~   84 (265)
                      ..+.++++|.++  +..+|...|.+..+..-+...    ..+......++...++.+.+.+... .+.+.+.+||++|+.
T Consensus        37 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~----~~~~~~~~~~~~~~~la~~L~~~~~~~~~v~f~~sGseA~e  112 (408)
T PRK04612         37 DQGREYLDLAAGIAVCGLGHNDPDLVAALTEQAGK----LWHTSNVFYSAPPLKLAEELVTASRFAEKVFLCNSGTEANE  112 (408)
T ss_pred             CCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHh----ccccccccCCHHHHHHHHHHHhhCCCCCEEEEcCchHHHHH
Confidence            345688998643  455898888887775433222    1111111234556778888887763 356888889999985


Q ss_pred             -HHHHh--c----C--C-CCEEEEcCCCCCChHHHHHhhcC----CCC-----eEEEeecCCCHHHHHhhcCC-CceEEE
Q 024619           85 -AVTHL--L----G--T-GEEIVAGDDLYGGTDRLLSRVTP----KTG-----VVVKRVNTCDLDEVASAIGP-WTKLVW  144 (265)
Q Consensus        85 -~~~~~--~----~--~-g~~viv~~~~~~~~~~~~~~~~~----~~g-----~~~~~~~~~d~~~l~~~~~~-~~~~i~  144 (265)
                       ++...  .    .  + ..+|+....+|++..........    ..+     ..+..++.+|.+.+++.+.+ ++.+|+
T Consensus       113 ~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~aavi  192 (408)
T PRK04612        113 AAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDFNDVEALEAAMAGGDVAAVM  192 (408)
T ss_pred             HHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCCCCHHHHHHhhCCCCEEEEE
Confidence             43322  1    1  1 24688888888887543211111    011     12345566789999988863 566666


Q ss_pred             EecCCCCcccccc-----HHHHHHHHHHcCCEEEEeCCcC-CCCCcCC---CCCCccEEEeccccccccCCCceeeEEEe
Q 024619          145 VESPTNPRQQICD-----IRKIAEMAHAHGALLLVDNSIM-SPVLSRP---LELGADIVMHSATKFIAGHSDVMAGVLAV  215 (265)
Q Consensus       145 ~~~~~np~G~~~~-----l~~i~~~a~~~~~~li~D~~~~-~~~~~~~---~~~~~di~~~s~sK~~~g~~g~~~G~v~~  215 (265)
                      ++.. +++|.+.+     +++|.++|++||+++|+||+|. .+..+..   ...+.+..+.+++|.++  +|++.|+++.
T Consensus       193 ~eP~-~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pdi~t~~K~l~--~G~piga~~~  269 (408)
T PRK04612        193 LEPI-QGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQVTPDIVTLAKALG--GGFPIGAMLA  269 (408)
T ss_pred             ECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCchhhhhhcCCCCCEEEEcchhc--CCCceEEEEE
Confidence            6654 55555522     8999999999999999999986 2222211   12244555668899994  3588999987


Q ss_pred             echhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619          216 KGERLAKELYFLQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      +++. .+.+...........++..+....+.|+
T Consensus       270 ~~~~-~~~~~~~~~~~t~~~~p~~~aaa~a~L~  301 (408)
T PRK04612        270 GPKV-AETMQFGAHGTTFGGNPLAAAVARVALR  301 (408)
T ss_pred             CHHH-HhhhcCCCcCCCCCCCHHHHHHHHHHHH
Confidence            7643 3333222222233345666555444443

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=99.49  E-value=4.3e-14  Score=119.87  Aligned_cols=162  Identities=28%  Similarity=0.392  Sum_probs=41.6

Q ss_pred             HHHHHHHHHhHhCCCceEEecchHHHHHHHHHhcCCCCEEEEcCCCC---CChHHHHHhhcCCCCeEEEeecC---CCHH
Q 024619           57 RDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLY---GGTDRLLSRVTPKTGVVVKRVNT---CDLD  130 (265)
Q Consensus        57 ~~~l~~~l~~~~g~~~~i~~~~g~~al~~~~~~~~~g~~viv~~~~~---~~~~~~~~~~~~~~g~~~~~~~~---~d~~  130 (265)
                      ...+++.++++.|+++.+++++.++|+.+++.-+.+|.+|+++...-   +..++ +.+..+..|.++++|-.   ..++
T Consensus        49 ~~~v~~ll~~ltgAeaA~VvNnnaAAv~L~l~~la~~~EvIvsRGelVeiGgsFR-ip~vm~~sGa~lvEVGttN~t~~~  127 (367)
T PF03841_consen   49 YAHVEELLCELTGAEAALVVNNNAAAVLLALNTLAKGKEVIVSRGELVEIGGSFR-IPDVMRQSGARLVEVGTTNRTHLS  127 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccc
Confidence            56678888999999999999999999876666556788899887643   33322 23677889999998853   4689


Q ss_pred             HHHhhcCCCceEEEEecCCCCc--ccc--ccHHHHHHHHHHcCCEEEEeCCcC---------C---CCCcCCCCCCccEE
Q 024619          131 EVASAIGPWTKLVWVESPTNPR--QQI--CDIRKIAEMAHAHGALLLVDNSIM---------S---PVLSRPLELGADIV  194 (265)
Q Consensus       131 ~l~~~~~~~~~~i~~~~~~np~--G~~--~~l~~i~~~a~~~~~~li~D~~~~---------~---~~~~~~~~~~~di~  194 (265)
                      ++++++.++|.+++-.+++|..  |..  .+++++++++++||+++++|..-+         .   +........|.|++
T Consensus       128 Dye~AI~e~Ta~ll~Vh~Sn~~i~GFt~~~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV  207 (367)
T PF03841_consen  128 DYEKAITENTAALLKVHTSNFRIQGFTGEVSLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLV  207 (367)
T ss_dssp             ---------------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCCT-SEE
T ss_pred             cccccccccccccccccccccccccccccccHHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEE
Confidence            9999999999999888887764  434  478999999999999999997642         1   22234556799999


Q ss_pred             EeccccccccCCCceeeEEEeechhHHH
Q 024619          195 MHSATKFIAGHSDVMAGVLAVKGERLAK  222 (265)
Q Consensus       195 ~~s~sK~~~g~~g~~~G~v~~~~~~~~~  222 (265)
                      ++|..|.++||.   .|+++++++.+..
T Consensus       208 ~fSGdKlLGGPQ---aGiI~Gkk~lI~~  232 (367)
T PF03841_consen  208 TFSGDKLLGGPQ---AGIIVGKKELIEK  232 (367)
T ss_dssp             EEETTSSSSS-S----EEEEEEHHHHHH
T ss_pred             EEECCCcCCCCC---eEEEEeCHHHHHH
Confidence            999999998875   7999999877654

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]

Probab=99.49  E-value=8.7e-13  Score=108.14  Aligned_cols=161  Identities=19%  Similarity=0.254  Sum_probs=129.6

Q ss_pred             hHHHHHHHHHhHhCCC---ceEEecchHHHHH-HHHHhcCCCCEEEEc-CCCCCChHHHHHhhcCCCCeEEEeecCC---
Q 024619           56 TRDALESLLAKLDKAD---RALCFTSGMAALA-AVTHLLGTGEEIVAG-DDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~---~~i~~~~g~~al~-~~~~~~~~g~~viv~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~---  127 (265)
                      ..+++.+-++..|...   ..++-++|..++. ++..++.|||.|++. ...|   -+.+.+.+++.|++|..++.+   
T Consensus        51 Im~~v~egikyVFkT~n~~tf~isgsGh~g~E~al~N~lePgd~vLv~~~G~w---g~ra~D~~~r~ga~V~~v~~~~G~  127 (385)
T KOG2862|consen   51 IMDEVLEGIKYVFKTANAQTFVISGSGHSGWEAALVNLLEPGDNVLVVSTGTW---GQRAADCARRYGAEVDVVEADIGQ  127 (385)
T ss_pred             HHHHHHHHHHHHhccCCCceEEEecCCcchHHHHHHhhcCCCCeEEEEEechH---HHHHHHHHHhhCceeeEEecCccc
Confidence            3667777777777554   3555667778886 677899999998864 3344   333468889999999998754   


Q ss_pred             --CHHHHHhhcC-CCceEEEEecCCCCcccccc-HHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEecccccc
Q 024619          128 --DLDEVASAIG-PWTKLVWVESPTNPRQQICD-IRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI  202 (265)
Q Consensus       128 --d~~~l~~~~~-~~~~~i~~~~~~np~G~~~~-l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~~  202 (265)
                        .+|.+.+.+. .++++|++++..+.||.+.| ++.+-++|++|++++++|.+-+.|... .-.++++|+......|.+
T Consensus       128 ~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~~~~~g~lc~k~~~lllVD~VaSlggt~F~mDewgVDvaytgSQKaL  207 (385)
T KOG2862|consen  128 AVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDLLAISGELCHKHEALLLVDTVASLGGTEFEMDEWGVDVAYTGSQKAL  207 (385)
T ss_pred             CccHHHHHHHHHhcCCceEEEEecCccccccchHHHHHHHHhhcCCeEEEEechhhcCCccceehhhcccEEEecchhhc
Confidence              7899999887 57899999999999999999 688899999999999999998887764 455789999999999999


Q ss_pred             ccCCCceeeEEEeechhHH
Q 024619          203 AGHSDVMAGVLAVKGERLA  221 (265)
Q Consensus       203 ~g~~g~~~G~v~~~~~~~~  221 (265)
                      ++|+|+  +.+.++++.+.
T Consensus       208 ~aP~GL--siisfS~ka~~  224 (385)
T KOG2862|consen  208 GAPAGL--SIISFSDKALE  224 (385)
T ss_pred             CCCCCc--ceeecCHHHHH
Confidence            999997  77877765543

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=99.48  E-value=1.1e-12  Score=114.29  Aligned_cols=229  Identities=16%  Similarity=0.138  Sum_probs=150.3

Q ss_pred             cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHHHH
Q 024619            9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAV   86 (265)
Q Consensus         9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~~~   86 (265)
                      .+.++++|.++  ...+|...|++..+..-+....    .+......++...++++.++++.+.+.+++++||++|+.+.
T Consensus        22 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~----~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~SGseA~e~A   97 (364)
T PRK04013         22 QGRRYLDLIAGIGVNVLGHNHPEWVEEMSEQLEKL----VVAGPMFEHEEKEEMLEELSKWVNYEYVYMGNSGTEAVEAA   97 (364)
T ss_pred             CCCEEEEcccChhhccCCCCCHHHHHHHHHHHHhc----CCccCCcCCHHHHHHHHHHHhhcCCCEEEEeCchHHHHHHH
Confidence            45788998642  4569998888887654333221    11111124567888999999998878899999999998633


Q ss_pred             HHh--cCCC-CEEEEcCCCCCChHHHHHhhcC----CCC-----eEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccc
Q 024619           87 THL--LGTG-EEIVAGDDLYGGTDRLLSRVTP----KTG-----VVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQ  154 (265)
Q Consensus        87 ~~~--~~~g-~~viv~~~~~~~~~~~~~~~~~----~~g-----~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~  154 (265)
                      +.+  ..+| ++|+..+.+|++..........    ..+     ..+..++.+|.+.+++.+.+++++|++++.....|.
T Consensus        98 lklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i~~~~aAvivEpi~g~gG~  177 (364)
T PRK04013         98 LKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPFNDVEAAKEAITKETAAVIFEPIQGEGGI  177 (364)
T ss_pred             HHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEecCCCHHHHHHHhcCCcEEEEEcCCcCCCCC
Confidence            332  2234 8899999888887533211100    011     123455667899999999888999999998877776


Q ss_pred             cc-c---HHHHHHHHHHcCCEEEEeCCcCC---CCCc--CCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHH
Q 024619          155 IC-D---IRKIAEMAHAHGALLLVDNSIMS---PVLS--RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY  225 (265)
Q Consensus       155 ~~-~---l~~i~~~a~~~~~~li~D~~~~~---~~~~--~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~  225 (265)
                      .. |   ++++.++|++||+++|+||++..   |...  ......+|+++  ++|.+++  |+..+.++.+.+. ..   
T Consensus       178 ~~~~~~yl~~lr~lc~~~gillI~DEv~tG~RtG~~~a~~~~gv~PDiv~--~gK~lgg--G~P~~a~~~~~~~-~~---  249 (364)
T PRK04013        178 VPAKEEFVKTLRDLTEDVGALLIADEVQSGLRTGKFLAIEHYKVEPDIVT--MGKGIGN--GVPVSLTLTNFDV-ER---  249 (364)
T ss_pred             cCCCHHHHHHHHHHHHHcCCEEEEechhhcCCCCchhHHHhcCCCCCEEE--ecccccC--CceeEEEEecccc-cC---
Confidence            64 4   89999999999999999999862   2221  12244578875  5999964  4677877776543 11   


Q ss_pred             HHHHhccCCCChhHHHHHHhccCch
Q 024619          226 FLQNAEGSGLAPFDCWICLRGVKTM  250 (265)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~l~~~  250 (265)
                       .....+..-+|..++..+..|+.+
T Consensus       250 -~~~~~T~~gnp~~~aaa~a~l~~i  273 (364)
T PRK04013        250 -GKHGSTFGGNPLACKAVAVTLRIL  273 (364)
T ss_pred             -CCcCCCCCcCHHHHHHHHHHHHHH
Confidence             112334455566666655555543

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.48  E-value=5.1e-13  Score=127.84  Aligned_cols=194  Identities=20%  Similarity=0.214  Sum_probs=135.6

Q ss_pred             EeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC------CCh-hHHHHHHHHHhHhCCC--ceEEecchHHHH
Q 024619           13 LMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS------GNP-TRDALESLLAKLDKAD--RALCFTSGMAAL   83 (265)
Q Consensus        13 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~------g~~-~~~~l~~~l~~~~g~~--~~i~~~~g~~al   83 (265)
                      ..+|. +..+++...|+.+....... ..   ....|++.      |.. ...++++.++++.|.+  ++-++.+++++.
T Consensus       104 ~~~fi-G~G~y~~~~P~~v~~~i~~~-~~---~~TaytPYqaEisQG~lqal~~~Qt~ia~LtG~~~anaSL~d~aTAaa  178 (993)
T PLN02414        104 FKSYI-GMGYYNTHVPPVILRNILEN-PG---WYTQYTPYQAEIAQGRLESLLNYQTMITDLTGLPMSNASLLDEGTAAA  178 (993)
T ss_pred             ccccc-CCCCCCccCCHHHHHHHHhC-hH---HHhhcCCCchHHHHHHHHHHHHHHHHHHHHhCCChhhEeecCChHHHH
Confidence            33444 45555555555553332221 11   22334444      333 3778899999999998  455666666666


Q ss_pred             H-HHHHh-cCC--CCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHH
Q 024619           84 A-AVTHL-LGT--GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIR  159 (265)
Q Consensus        84 ~-~~~~~-~~~--g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~  159 (265)
                      . ++++. .++  +++|++++..|+++...|...++..|++++.++.++.+    ...+.+..+++..| |.+|.+.|++
T Consensus       179 ea~~~a~~~~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~~~----~~~~~v~~vlvq~P-~~~G~v~dv~  253 (993)
T PLN02414        179 EAMAMCNNILKGKKKKFLIASNCHPQTIDVCQTRADGLGLEVVVADEKDFD----YSSGDVCGVLVQYP-ATDGEVLDYA  253 (993)
T ss_pred             HHHHHHHhcccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecchhhc----cccCceEEEEEecC-CCCeEEcCHH
Confidence            5 44444 454  47899999999999999988899999999999975422    12334556665566 4599999999


Q ss_pred             HHHHHHHHcCCEEEEeCCcCCCC--CcCCCCCCccEEEecccccc-----ccCCCceeeEEEeechhH
Q 024619          160 KIAEMAHAHGALLLVDNSIMSPV--LSRPLELGADIVMHSATKFI-----AGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       160 ~i~~~a~~~~~~li~D~~~~~~~--~~~~~~~~~di~~~s~sK~~-----~g~~g~~~G~v~~~~~~~  220 (265)
                      +|+++||++|+++++ .++..+.  +..+.+.|+||++++.+||.     +||.   .|+++++++..
T Consensus       254 ~I~~~ah~~GaL~iV-aad~lal~~l~~pge~GADi~vgsgqKwg~P~G~GGP~---aGflavr~~~~  317 (993)
T PLN02414        254 EFVKNAHANGVKVVM-ATDLLALTMLKPPGEWGADIVVGSAQRFGVPMGYGGPH---AAFLATSQEYK  317 (993)
T ss_pred             HHHHHHHHcCCEEEE-EECHHHhcCCCCHhhccCcEEEECCCccccCCCCCCCC---eeEEEECHHHH
Confidence            999999999999999 6665443  33578899999999999997     4443   69999888654

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=99.48  E-value=2.4e-13  Score=118.71  Aligned_cols=158  Identities=12%  Similarity=0.042  Sum_probs=113.2

Q ss_pred             hhHHHHHHHHHhHhCCC--c-eEEecc-hHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCH
Q 024619           55 PTRDALESLLAKLDKAD--R-ALCFTS-GMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDL  129 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~--~-~i~~~~-g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~  129 (265)
                      ...+++++.++++++++  . ++++++ |+.++. ++..++.+ +.+++....|..............+ ++..++.+..
T Consensus        41 ~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l~~~-~~l~i~~G~~~~~~~~~a~~~~~~~-~~~~~~~~~~  118 (361)
T TIGR01366        41 NLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGLIEK-KSLHLSFGEFSSKFAKAVKLAPWLG-EPIIVTADPG  118 (361)
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhcccc-cccEEecCHHHHHHHHHHHhhhccC-CceEEecCCC
Confidence            45889999999999973  2 444444 678886 66677643 4445556666555443323221223 4555554444


Q ss_pred             HHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCce
Q 024619          130 DEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVM  209 (265)
Q Consensus       130 ~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~  209 (265)
                      +.+...+.+++++|.+++..|.||.+.|+++|   ++++|+++++|.+++.|......+. .|++++|.+|++++|+|  
T Consensus       119 ~~~~~~~~~~~~lV~~~h~et~tG~~~pi~~I---~~~~g~~~iVDavqs~g~~~idv~~-~D~~~~s~~K~lg~~~G--  192 (361)
T TIGR01366       119 SAPEPQADPGVDVIAWAHNETSTGVAVPVRRP---EGSDDALVVIDATSGAGGLPVDIAE-TDVYYFAPQKNFASDGG--  192 (361)
T ss_pred             CCCCCccCCCCCEEEEcccCCccceecccccc---cccCCCeEEEEcCccccCCCCCHHH-CCEEEEEchhhcCCCCc--
Confidence            45555566789999999999999999999888   5889999999999999998755553 89999999999987776  


Q ss_pred             eeEEEeechhH
Q 024619          210 AGVLAVKGERL  220 (265)
Q Consensus       210 ~G~v~~~~~~~  220 (265)
                      .++++.+++.+
T Consensus       193 l~~~~~s~~~~  203 (361)
T TIGR01366       193 LWLAIMSPAAL  203 (361)
T ss_pred             eEEEEECHHHH
Confidence            36666676554

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=99.47  E-value=1.1e-12  Score=117.19  Aligned_cols=233  Identities=13%  Similarity=0.110  Sum_probs=138.4

Q ss_pred             cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCC-CCChhHHHHHHHHHhHhCC---CceEEecchHHH
Q 024619            9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTR-SGNPTRDALESLLAKLDKA---DRALCFTSGMAA   82 (265)
Q Consensus         9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~-~g~~~~~~l~~~l~~~~g~---~~~i~~~~g~~a   82 (265)
                      .+.++++|.+  ++..+|..+|.+.++...+...    ..+.+.. .+++...++.+++.+..+.   +.+++++||++|
T Consensus        39 dG~~~lD~~~g~~~~~lGh~~~~i~~a~~~~~~~----~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~f~~sGsea  114 (425)
T PRK08088         39 EGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKK----LSHTCFQVLAYEPYLELCEKMNQKVPGDFAKKTLLVTTGSEA  114 (425)
T ss_pred             CCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHhh----CCCccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHH
Confidence            3467888853  2344788877777665432221    1222222 2456677899999887753   368899999987


Q ss_pred             HH-HHHHh--cCCCCEEEEcCCCCCChHHHHHhhcCC-----CC-------eEEEeecCC--------CHHHHHhhcC--
Q 024619           83 LA-AVTHL--LGTGEEIVAGDDLYGGTDRLLSRVTPK-----TG-------VVVKRVNTC--------DLDEVASAIG--  137 (265)
Q Consensus        83 l~-~~~~~--~~~g~~viv~~~~~~~~~~~~~~~~~~-----~g-------~~~~~~~~~--------d~~~l~~~~~--  137 (265)
                      +. ++...  ...+..|+..+++|++...........     .+       .....++.+        +++.+++.+.  
T Consensus       115 ~e~Alklar~~~~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~  194 (425)
T PRK08088        115 VENAVKIARAATKRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGVSEDDAIASIERIFKND  194 (425)
T ss_pred             HHHHHHHHHHHhCCCeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCccccCccHHHHHHHHHHHHHhc
Confidence            74 33221  223455666699998886543222110     01       111112211        1445766663  


Q ss_pred             ---CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCC-CCCcCCC---CCCccEEEeccccccccCC
Q 024619          138 ---PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLSRPL---ELGADIVMHSATKFIAGHS  206 (265)
Q Consensus       138 ---~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~~-~~~~~~~---~~~~di~~~s~sK~~~g~~  206 (265)
                         +++++|+++......|.+.+    +++|.++|+++|+++|+||+|.. +..+...   ..+.+.-+.||||.++  +
T Consensus       195 ~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~~~~~~~~~~~pdi~s~sK~l~--~  272 (425)
T PRK08088        195 AAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLFAMEQMGVAADLTTFAKSIA--G  272 (425)
T ss_pred             cCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhHHhhcCCCCCEEEEecccc--C
Confidence               46788999887766676644    89999999999999999999873 2222111   2233344689999994  4


Q ss_pred             CceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619          207 DVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       207 g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      |+++|+++.+.+.+ +.+...........++..+..+...|+
T Consensus       273 G~rig~v~~~~~~~-~~~~~~~~~~t~~~~~~~~~a~~~~l~  313 (425)
T PRK08088        273 GFPLAGVTGRAEVM-DAIAPGGLGGTYAGNPIACAAALAVLK  313 (425)
T ss_pred             CCcceeeEecHHHH-hhcCCCCCCCCCCcCHHHHHHHHHHHH
Confidence            69999999876544 333222233334455555555444433

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=99.47  E-value=8.2e-13  Score=118.23  Aligned_cols=232  Identities=17%  Similarity=0.111  Sum_probs=137.4

Q ss_pred             cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHh-C-CCceEEecchHHHHH
Q 024619            9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD-K-ADRALCFTSGMAALA   84 (265)
Q Consensus         9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~-g-~~~~i~~~~g~~al~   84 (265)
                      .+.++++|.++  +..+|...|.+..+..-+....   .........++...+++++++++. + .+.+.+.+||++|+.
T Consensus        41 dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~q~~~~---~~~~~~~~~~~~~~~la~~L~~~~~~~~~~v~f~~SGseA~e  117 (433)
T PRK08117         41 DGKEYLDFTSGIAVANVGHRHPKVVQAIKEQADKL---MHGPSGVIYYESILKLAEELAEITPGGLDCFFFSNSGAEAIE  117 (433)
T ss_pred             CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhc---cCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHH
Confidence            35678998654  5679977777776654322211   111111124467889999999988 3 234566689999985


Q ss_pred             HHHHh---cCCCCEEEEcCCCCCChHHHHHhhcCC-----CCe-----EEEeecCC-----------------CHHHHHh
Q 024619           85 AVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTPK-----TGV-----VVKRVNTC-----------------DLDEVAS  134 (265)
Q Consensus        85 ~~~~~---~~~g~~viv~~~~~~~~~~~~~~~~~~-----~g~-----~~~~~~~~-----------------d~~~l~~  134 (265)
                      ..+.+   ......|+..+.+|++.......+...     .+.     .+..++.+                 +++++++
T Consensus       118 ~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  197 (433)
T PRK08117        118 GALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLES  197 (433)
T ss_pred             HHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchhHHHHHHHHHHHH
Confidence            33333   233467887788887765332111100     000     01122211                 3444554


Q ss_pred             hcC-----CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCC-CCCcCC-----CCCCccEEEeccc
Q 024619          135 AIG-----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLSRP-----LELGADIVMHSAT  199 (265)
Q Consensus       135 ~~~-----~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~~-~~~~~~-----~~~~~di~~~s~s  199 (265)
                      .+.     .++.+|+++......|.+.+    ++++.++|++||+++|+||+|.. +..+..     .....|+  .+++
T Consensus       198 ~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~~~~~gv~pDi--~t~s  275 (433)
T PRK08117        198 LFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAAQTFGVVPDI--MTIA  275 (433)
T ss_pred             HHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchhHhhcCCCCCE--eehh
Confidence            432     46889999999998999877    99999999999999999999972 121211     1223565  5899


Q ss_pred             cccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619          200 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       200 K~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      |.++  +|+++|+++.+++.. +.+...........++..+...+..|+
T Consensus       276 K~lg--~G~pigav~~~~~i~-~~~~~~~~~~T~~~np~~~aaa~a~L~  321 (433)
T PRK08117        276 KGIA--SGLPLSAVVASKELM-EQWPLGSHGTTFGGNPVACAAALATLE  321 (433)
T ss_pred             hhcc--CCCcceeEEEcHHHH-hhccCCCCCCCCCcCHHHHHHHHHHHH
Confidence            9995  468889988876543 322221122223345555555444444

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=99.47  E-value=2.8e-12  Score=114.75  Aligned_cols=232  Identities=14%  Similarity=0.098  Sum_probs=139.1

Q ss_pred             cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCC--CceEEecchHHHHH
Q 024619            9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA--DRALCFTSGMAALA   84 (265)
Q Consensus         9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~--~~~i~~~~g~~al~   84 (265)
                      .+.++++|.++  +..+|...|.+..+..-+....   .........++...++.+.+.+....  +.+.+++||++|+.
T Consensus        39 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~---~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGsEAve  115 (443)
T PRK08360         39 EGNEYIDFLSDAAVQNVGHNNPRVVKAIKEQTDKL---IHYTPIYGFPVEPLLLAEKLIEIAPGDNPKVSFGLSGSDAND  115 (443)
T ss_pred             CCCEEEEccccHhhcccCCCCHHHHHHHHHHHHhc---cCccccccCcHHHHHHHHHHHHhCCCCCCEEEEcCCHHHHHH
Confidence            45678888643  5669998888877755333221   11111111245677888889888754  35778889999986


Q ss_pred             HHHHh---cCCCCEEEEcCCCCCChHHHHHhhcC-----C--CC--eEEEeecCC-----------------CHHHHHhh
Q 024619           85 AVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTP-----K--TG--VVVKRVNTC-----------------DLDEVASA  135 (265)
Q Consensus        85 ~~~~~---~~~g~~viv~~~~~~~~~~~~~~~~~-----~--~g--~~~~~~~~~-----------------d~~~l~~~  135 (265)
                      +.+.+   ......|+....+|++..........     .  .+  ..+.+++.+                 +.+.+++.
T Consensus       116 ~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (443)
T PRK08360        116 GAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEK  195 (443)
T ss_pred             HHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHHHHHHHHH
Confidence            33333   23346788777788776422111111     0  01  112222211                 12334444


Q ss_pred             cC-----CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCC-CCCcC-----CCCCCccEEEecccc
Q 024619          136 IG-----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLSR-----PLELGADIVMHSATK  200 (265)
Q Consensus       136 ~~-----~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~~-~~~~~-----~~~~~~di~~~s~sK  200 (265)
                      +.     +++++|+++..+|++|.+.+    +++|.++|++||+++|+||+|.. +..+.     ......|++  +++|
T Consensus       196 l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~a~~~~~~~pDii--tlsK  273 (443)
T PRK08360        196 FEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHFGVEPDII--TLGK  273 (443)
T ss_pred             HHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccchhhhhcCCCCCEE--Eecc
Confidence            42     56899999988899998854    89999999999999999999862 22221     123356766  6799


Q ss_pred             ccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619          201 FIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       201 ~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      .++  +|+++|+++++++.. +.+...........++..+...+..++
T Consensus       274 ~l~--~G~pigav~~~~~i~-~~~~~~~~~~T~~~~p~~~aaa~a~l~  318 (443)
T PRK08360        274 PLG--GGLPISATIGRAEIM-DSLPPLAHAFTLSGNPVASAAALAVIE  318 (443)
T ss_pred             ccc--CCceeEEEEEcHHHH-hhhcCCCCCCCCCcCHHHHHHHHHHHH
Confidence            995  468899998876543 333222222334445555554444443

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=99.45  E-value=5.5e-12  Score=109.84  Aligned_cols=150  Identities=23%  Similarity=0.216  Sum_probs=94.7

Q ss_pred             HHHHHHhHhCCC----c-eEEecchHHHH-HHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCC-------CCeEEEeecC
Q 024619           60 LESLLAKLDKAD----R-ALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPK-------TGVVVKRVNT  126 (265)
Q Consensus        60 l~~~l~~~~g~~----~-~i~~~~g~~al-~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~-------~g~~~~~~~~  126 (265)
                      ..++++++||++    . .+=.-||+.|. .++.++++|||+|+..+..+.+....- .....       ...+.+..++
T Consensus        71 a~~ra~~lF~~~~~~w~anvqp~SGs~An~av~~aLl~pGD~Im~l~l~~GGHlshg-~~~~~~~~~~~~~~~~~~~y~~  149 (399)
T PF00464_consen   71 AIERAKELFGAEPKEWYANVQPHSGSQANLAVYMALLKPGDTIMGLSLPHGGHLSHG-SSVNFKKISASGLYFESVPYPV  149 (399)
T ss_dssp             HHHHHHHHHT-STTTEEEE---SSHHHHHHHHHHHHT-TT-EEEEEEGGGT--GGGT--TTSHSBSSHHHHHSEEEEEEB
T ss_pred             HHHHHHHHhCCCcccceEEeecCCchHHHHHHHHHHHhhcCcEEecChhhccccccc-ccccccccccccceEEEEeeee
Confidence            345667889988    4 55566888776 588999999999998777665443110 10011       1123444332


Q ss_pred             C------CHHHHHhhcC-CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcC-----CCCCcCCCCCCccEE
Q 024619          127 C------DLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIM-----SPVLSRPLELGADIV  194 (265)
Q Consensus       127 ~------d~~~l~~~~~-~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~-----~~~~~~~~~~~~di~  194 (265)
                      +      |.+++++.+. .++++|++.....|  ...|.+++.++|++.|++|+.|.+|-     .|.+++|... .|++
T Consensus       150 d~~~~~ID~d~l~~~a~~~kPklIi~G~S~y~--~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~~-ADvv  226 (399)
T PF00464_consen  150 DPDTGLIDYDELEKLAKEHKPKLIICGASSYP--RPIDFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPFPY-ADVV  226 (399)
T ss_dssp             -TTTSSB-HHHHHHHHHHH--SEEEEE-SSTS--S---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCCT-SSEE
T ss_pred             ecCCCeECHHHHHHHHhhcCCCEEEECchhcc--CccCHHHHHHHHHhcCcEEEecccccccceehheecCcccc-ceEE
Confidence            2      8889888876 57999988766554  45789999999999999999999995     5566788877 9999


Q ss_pred             EeccccccccCCCceeeEEEee
Q 024619          195 MHSATKFIAGHSDVMAGVLAVK  216 (265)
Q Consensus       195 ~~s~sK~~~g~~g~~~G~v~~~  216 (265)
                      ++|.+|+|.||.   +|+|.++
T Consensus       227 t~sThKtl~GPr---ggiI~~~  245 (399)
T PF00464_consen  227 TGSTHKTLRGPR---GGIILTN  245 (399)
T ss_dssp             EEESSGGG-SSS----EEEEES
T ss_pred             EeeccccccccC---ceEEEEc
Confidence            999999999986   6999998

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]

Probab=99.44  E-value=7.9e-13  Score=105.98  Aligned_cols=143  Identities=18%  Similarity=0.236  Sum_probs=112.6

Q ss_pred             ceEEecchH-HHHH-HHHHhcCCC-CEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-----CHHHHHhhcC--CCce
Q 024619           72 RALCFTSGM-AALA-AVTHLLGTG-EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIG--PWTK  141 (265)
Q Consensus        72 ~~i~~~~g~-~al~-~~~~~~~~g-~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~~~--~~~~  141 (265)
                      +.+++..|+ +.+. .++..+.|| ++|+.-.|+|.-|.    -.+...+++++-++..     +.|++.+.+.  .+++
T Consensus        87 dnic~GvGsDE~ID~iiR~~c~PGkeKIl~cPPtysMY~----v~A~iNd~eVvkvpl~pdF~lnvdai~evl~~ds~iK  162 (375)
T KOG0633|consen   87 DNICVGVGSDELIDLIIRCVCDPGKEKILDCPPTYSMYV----VDAAINDAEVVKVPLNPDFSLNVDAIAEVLELDSKIK  162 (375)
T ss_pred             cceEEecCcHHHHHHHHhheecCCccceeecCCcceeEE----EEeecCCceEEEecCCCCccccHHHHHHHHhccccce
Confidence            688888888 7775 677789999 78999999998774    5567889999999854     7888888876  4689


Q ss_pred             EEEEecCCCCccccccHHHHHHHHHHc-CCEEEEeCCcCCCC-C----cCCCCCCccEEEeccccccccCCCceeeEEEe
Q 024619          142 LVWVESPTNPRQQICDIRKIAEMAHAH-GALLLVDNSIMSPV-L----SRPLELGADIVMHSATKFIAGHSDVMAGVLAV  215 (265)
Q Consensus       142 ~i~~~~~~np~G~~~~l~~i~~~a~~~-~~~li~D~~~~~~~-~----~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~  215 (265)
                      ++++++|.||||.+...+.|.++..-- |.++++||+|-... .    .-...+..-+++.++||.| |..|+|.|+-..
T Consensus       163 ~~F~tSPgNPtg~~ik~~di~KiLe~p~nglVVvDEAYidFsg~~S~~~lV~kYpNLivlqTlSKsf-GLAGiRvG~~~~  241 (375)
T KOG0633|consen  163 CIFLTSPGNPTGSIIKEDDILKILEMPDNGLVVVDEAYIDFSGVESRMKLVKKYPNLIVLQTLSKSF-GLAGIRVGYGAF  241 (375)
T ss_pred             EEEEcCCCCCCcccccHHHHHHHHhCCCCcEEEEeeeeEeeccccccchHhHhCCceeehhhhhhhc-CcceeEeecccc
Confidence            999999999999997666666665543 79999999984211 1    2233456679999999999 889999999987


Q ss_pred             echh
Q 024619          216 KGER  219 (265)
Q Consensus       216 ~~~~  219 (265)
                      +...
T Consensus       242 ~~~i  245 (375)
T KOG0633|consen  242 PLSI  245 (375)
T ss_pred             cHHH
Confidence            7643

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=99.43  E-value=4.6e-12  Score=113.70  Aligned_cols=204  Identities=16%  Similarity=0.167  Sum_probs=132.0

Q ss_pred             cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CChhHHHHHHHHHhHhCC--CceEEecchHHHH
Q 024619            9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLDKA--DRALCFTSGMAAL   83 (265)
Q Consensus         9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~g~--~~~i~~~~g~~al   83 (265)
                      .+.++++|.++  ...+|...|.+..+..-+....    . .+++. .++...++.+.+.++...  +.+.+.+||++|+
T Consensus        80 dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~l----~-~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEAv  154 (459)
T PRK11522         80 QGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQ----P-LHSQELLDPLRAMLAKTLAALTPGKLKYSFFCNSGTESV  154 (459)
T ss_pred             CCCEEEECCcCHHhhhcCCCCHHHHHHHHHHHhhC----c-ccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCchHHH
Confidence            45688898644  5669998888887765333221    1 11222 356788889999888643  4578888999998


Q ss_pred             HHHHHhc---C--C-CCEEEEcCCCCCChHHHHHhhcCCCC---------eEEEeecCCCHHHHHhhcC------CCceE
Q 024619           84 AAVTHLL---G--T-GEEIVAGDDLYGGTDRLLSRVTPKTG---------VVVKRVNTCDLDEVASAIG------PWTKL  142 (265)
Q Consensus        84 ~~~~~~~---~--~-g~~viv~~~~~~~~~~~~~~~~~~~g---------~~~~~~~~~d~~~l~~~~~------~~~~~  142 (265)
                      .+.+.+.   .  + ...|+....+|++.............         ..+..++.+|.+++++.+.      +++.+
T Consensus       155 e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~iAa  234 (459)
T PRK11522        155 EAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALSECKKTGDDVAA  234 (459)
T ss_pred             HHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCCCCHHHHHHHHHHhhccCCcEEE
Confidence            6333331   1  2 34688888888887533212111110         1133455567777777664      35789


Q ss_pred             EEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CCCCCccEEEeccccccccCCCceeeE
Q 024619          143 VWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATKFIAGHSDVMAGV  212 (265)
Q Consensus       143 i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~~~~~di~~~s~sK~~~g~~g~~~G~  212 (265)
                      |+++......|.+.+    ++++.++|++||+++|+||++. .|..+.     .....+|++  +++|.+++. -+..|.
T Consensus       235 vIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDiv--t~gK~lggG-~~Piga  311 (459)
T PRK11522        235 VILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQPDIL--CLAKALGGG-VMPIGA  311 (459)
T ss_pred             EEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhhhhhccCCCCCEE--EechhhhCC-Ccccee
Confidence            999999988898876    8999999999999999999984 332321     123357877  679999641 123566


Q ss_pred             EEeechhH
Q 024619          213 LAVKGERL  220 (265)
Q Consensus       213 v~~~~~~~  220 (265)
                      ++.+++..
T Consensus       312 v~~~~~i~  319 (459)
T PRK11522        312 TIATEEVF  319 (459)
T ss_pred             EEEcHHHH
Confidence            66665443

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=99.42  E-value=1.1e-12  Score=114.41  Aligned_cols=152  Identities=22%  Similarity=0.182  Sum_probs=107.4

Q ss_pred             hHHHHHHHHHhHhCCC--c-eEEecc-hHHHHH-HHHHhcC---CCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC
Q 024619           56 TRDALESLLAKLDKAD--R-ALCFTS-GMAALA-AVTHLLG---TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC  127 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~-~i~~~~-g~~al~-~~~~~~~---~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  127 (265)
                      ..+++++.+++++|++  + ++++++ |++++. ++..++.   +|+.|++     ..+...+...++..|++++.++.+
T Consensus        45 ~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~l~~~~~~~~~i~~-----g~~~~~~~~~a~~~g~~~~~~~~~  119 (355)
T cd00611          45 IVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLNLLGDKGTADYVVT-----GAWSAKAAKEAKRYGGVVVIVAAK  119 (355)
T ss_pred             HHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCCCCCeEEEEEC-----CHHHHHHHHHHHhcCCCcEEEecc
Confidence            4788999999999963  3 455545 679986 6677776   4555544     222222235667888888877643


Q ss_pred             ------C-HHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEecccc
Q 024619          128 ------D-LDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATK  200 (265)
Q Consensus       128 ------d-~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK  200 (265)
                            + ++..+..+.+++++|.+++..|.||...+     ++++.+|+++++|.+++.|..+...+. .++.+.|.+|
T Consensus       120 ~~g~~~~~~~~~~~~~~~~~~lV~~~h~~t~tG~~~~-----~i~~~~g~~~~VDa~qs~g~~~idv~~-~~~~~ss~~K  193 (355)
T cd00611         120 EEGKYTKIPDVETWDLAPDAAYVHYCSNETIHGVEFD-----EVPDTGGVPLVADMSSNILSRPIDVSK-FGVIYAGAQK  193 (355)
T ss_pred             cccCCCCCCCHhhcCCCCCCCEEEEeCCcccccEEcc-----eecccCCCeEEEEccccccCCCCCHHH-hCEEEeeccc
Confidence                  3 33333456688999999999999999832     445569999999999999998743322 3466677999


Q ss_pred             ccccCCCceeeEEEeechhHH
Q 024619          201 FIAGHSDVMAGVLAVKGERLA  221 (265)
Q Consensus       201 ~~~g~~g~~~G~v~~~~~~~~  221 (265)
                      ++ ||+|+  |+++.+++.+.
T Consensus       194 ~l-GP~G~--g~l~~~~~~~~  211 (355)
T cd00611         194 NL-GPAGV--TVVIVRKDLLG  211 (355)
T ss_pred             cc-CCCce--EEEEECHHHHh
Confidence            88 79995  88888886653

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=99.42  E-value=8.6e-12  Score=111.29  Aligned_cols=231  Identities=16%  Similarity=0.162  Sum_probs=143.9

Q ss_pred             CcceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CChhHHHHHHHHHhHhCC--CceEEecchHHH
Q 024619            8 GVSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLDKA--DRALCFTSGMAA   82 (265)
Q Consensus         8 ~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~g~--~~~i~~~~g~~a   82 (265)
                      ..+.++++|.++  ...+|...|.+..+..-+....    . ..++. .++...++.+++.++...  +.+.+++||++|
T Consensus        72 ~dG~~ylD~~~g~~~~~lGh~hp~v~~Av~~ql~~l----~-~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~SGsEA  146 (442)
T TIGR03372        72 TQGNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAKQ----P-LHSQELLDPLRALLAKTLAALTPGKLKYSFFCNSGTES  146 (442)
T ss_pred             CCCCEEEECCccHHhhhcCCCCHHHHHHHHHHHHhC----C-CcccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCchHH
Confidence            345788998644  5569998888887765333221    1 11222 456788899999988743  347788899999


Q ss_pred             HHHHHHh---c---CCCCEEEEcCCCCCChHHHHHhhcCC------C---CeEEEeecCCCHHHHHhhcC------CCce
Q 024619           83 LAAVTHL---L---GTGEEIVAGDDLYGGTDRLLSRVTPK------T---GVVVKRVNTCDLDEVASAIG------PWTK  141 (265)
Q Consensus        83 l~~~~~~---~---~~g~~viv~~~~~~~~~~~~~~~~~~------~---g~~~~~~~~~d~~~l~~~~~------~~~~  141 (265)
                      +.+.+.+   .   ..+..|+....+|++...........      +   ...+..+|.+|.+.+++.+.      .++.
T Consensus       147 ~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~d~~~~~~~l~~~~~~~~~vA  226 (442)
T TIGR03372       147 VEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFGDIEAMLKALNECKKTGDDVA  226 (442)
T ss_pred             HHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCCCCHHHHHHHHHHHhcCCCcEE
Confidence            8633332   1   12357888888888875332121111      1   11235566678877766653      4588


Q ss_pred             EEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CCCCCccEEEeccccccccCCC-cee
Q 024619          142 LVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATKFIAGHSD-VMA  210 (265)
Q Consensus       142 ~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~~~~~di~~~s~sK~~~g~~g-~~~  210 (265)
                      +|+++......|.+.+    ++++.++|++||+++|+||++. .|..+.     .....+|+++  ++|.+++  | +.+
T Consensus       227 avIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt--~gK~lg~--G~~Pi  302 (442)
T TIGR03372       227 AIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQPDILC--LAKALGG--GVMPI  302 (442)
T ss_pred             EEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccchhhhhcCCCCCeee--ehhhhcC--Ccccc
Confidence            9999999988888877    8999999999999999999983 333332     1233578875  7999954  3 235


Q ss_pred             eEEEeechhHHHHHHHH--HHhccCCCChhHHHHHHhccC
Q 024619          211 GVLAVKGERLAKELYFL--QNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       211 G~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      |.++.+++ +.+.+...  ....+..-+|..++..+..|+
T Consensus       303 gavv~~~~-i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~  341 (442)
T TIGR03372       303 GATIATEA-VFSVLFDNPFLHTTTFGGNPLACAAALATIN  341 (442)
T ss_pred             eEEEecHH-HHHhhhccCccccCCCCCCHHHHHHHHHHHH
Confidence            77766654 43333111  112222335655555444444

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PLN02263 serine decarboxylase

Probab=99.42  E-value=5.7e-12  Score=111.78  Aligned_cols=159  Identities=13%  Similarity=0.099  Sum_probs=120.4

Q ss_pred             hHHHHHHHHHhHhCCC----ceEEecchHHHH-HHHHHhc--CCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-
Q 024619           56 TRDALESLLAKLDKAD----RALCFTSGMAAL-AAVTHLL--GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-  127 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~----~~i~~~~g~~al-~~~~~~~--~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-  127 (265)
                      .-.++-+++++++|.+    ...++++|++++ .++...-  .+...+++++-+|.+..    ++++..|++++.++.+ 
T Consensus       134 ~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~Sv~----KAa~llgi~~~~Vp~d~  209 (470)
T PLN02263        134 FEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVF----KAARMYRMECVKVDTLV  209 (470)
T ss_pred             HHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHHHH----HHHHhcCCcceEeccCC
Confidence            3667788999999864    267888888776 3443331  23346778888888886    6677888888888864 


Q ss_pred             ----CHHHHHhhcCCC---ceEEEEecCCCCccccccHHHHHHHHHHcCC-----EEEEeCCcCCCCCc---C----CCC
Q 024619          128 ----DLDEVASAIGPW---TKLVWVESPTNPRQQICDIRKIAEMAHAHGA-----LLLVDNSIMSPVLS---R----PLE  188 (265)
Q Consensus       128 ----d~~~l~~~~~~~---~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~-----~li~D~~~~~~~~~---~----~~~  188 (265)
                          |+++|++++.++   +.+|+.+..+.++|.+.|+++|.++|+++|+     ++++|.+|+...++   .    ...
T Consensus       210 ~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~~~df~  289 (470)
T PLN02263        210 SGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAPKVTFK  289 (470)
T ss_pred             CCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhcccccccCCC
Confidence                899999888643   4566778888999999999999999999997     99999999754442   1    111


Q ss_pred             CCccEEEeccccccccCCCceeeEEEeechhH
Q 024619          189 LGADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       189 ~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                      ..+|=+..++|||++.|-+  +|+++.++..+
T Consensus       290 ~~vDSIsvD~HK~l~~P~~--cgvll~R~~~~  319 (470)
T PLN02263        290 KPIGSVSVSGHKFVGCPMP--CGVQITRMEHI  319 (470)
T ss_pred             cCccEEEECCccccCCCcC--EEEEEEehhhH
Confidence            2378899999999988876  79998887543

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=99.42  E-value=8.2e-13  Score=122.08  Aligned_cols=154  Identities=14%  Similarity=0.154  Sum_probs=118.8

Q ss_pred             hHHHHHHHHHhHhCCCceEEecchH-HHH-HHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC------
Q 024619           56 TRDALESLLAKLDKADRALCFTSGM-AAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------  127 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~~~i~~~~g~-~al-~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------  127 (265)
                      ...+.++..++.||++...++++|+ .++ .++++++.+||.|++++.+|-+..    ..+...|+++++++..      
T Consensus       196 ~i~eAe~~AA~~fgAd~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~----haLilsga~PVYl~P~rn~~Gi  271 (714)
T PRK15400        196 PHKEAEEYIARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTVLIDRNCHKSLT----HLMMMSDVTPIYFRPTRNAYGI  271 (714)
T ss_pred             HHHHHHHHHHHHhCCCcEEEEeCchHHHHHHHHHHhcCCCCEEEeecccHHHHH----HHHHHcCCeEEEecccccccCC
Confidence            4889999999999999888888886 666 478889999999999999998876    4557789999998632      


Q ss_pred             ---------CHHHHHhhcCC--Cce---EEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCC-----CCc--CC
Q 024619          128 ---------DLDEVASAIGP--WTK---LVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSP-----VLS--RP  186 (265)
Q Consensus       128 ---------d~~~l~~~~~~--~~~---~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~-----~~~--~~  186 (265)
                               +.+.+++++.+  +.+   .+++++| +-.|.+.++++|++.|+.++  |++||||+.=     .+.  ++
T Consensus       272 ~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~p-TYdG~~yd~~~I~~~~~~~~--ilvDEAwgah~~F~p~~~~~sa  348 (714)
T PRK15400        272 LGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCG  348 (714)
T ss_pred             ccCCCccccCHHHHHHHHHhCccccCccEEEEECC-CCccEecCHHHHHHHhCCCC--EEEEccchhhhccCcccCCcCh
Confidence                     37888888852  333   6888888 44899999999999999887  7999998632     121  22


Q ss_pred             CCCCc---c--EEEeccccccccCCCceeeEEEeech
Q 024619          187 LELGA---D--IVMHSATKFIAGHSDVMAGVLAVKGE  218 (265)
Q Consensus       187 ~~~~~---d--i~~~s~sK~~~g~~g~~~G~v~~~~~  218 (265)
                      ...+.   |  +++.|.||.+.+..  +++++..+..
T Consensus       349 m~~ga~~~~~i~vtQStHKtL~alT--QaS~LHvkg~  383 (714)
T PRK15400        349 MSGGRVEGKVIYETQSTHKLLAAFS--QASMIHVKGD  383 (714)
T ss_pred             hhcCCCCCCceEEEEchhhcccchh--HHhHHHHcCC
Confidence            33333   4  99999999987654  4566666543

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=99.40  E-value=2.5e-12  Score=111.71  Aligned_cols=152  Identities=20%  Similarity=0.118  Sum_probs=114.6

Q ss_pred             hHHHHHHHHHhHhCC-C--ceEEecc-hHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeec-----
Q 024619           56 TRDALESLLAKLDKA-D--RALCFTS-GMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN-----  125 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~-~--~~i~~~~-g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~-----  125 (265)
                      ..+++++.++++++. +  +++++++ |+.|+. ++..++.+|+++++......  -..|...++..|+ +..+.     
T Consensus        38 ~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~~~~~~~l~i~~G~f--g~r~~~~a~~~g~-~~~~~~~~~~  114 (349)
T TIGR01364        38 VANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLLAEGKVADYIVTGAW--SKKAAKEAKKYGV-VNVVASGKEG  114 (349)
T ss_pred             HHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHH--HHHHHHHHHHhCC-cEEEeccccC
Confidence            488899999999995 2  3666655 679996 77888889998876544432  3334678888888 55444     


Q ss_pred             ----CCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccc
Q 024619          126 ----TCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKF  201 (265)
Q Consensus       126 ----~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~  201 (265)
                          ..++++++  +++++++|.+++..+.||...+     ++++.+++++++|.+++.|..+...+ +.|++++|.+|+
T Consensus       115 ~~~~~~~~~~~~--~~~~~~~v~~th~ETstGv~~~-----~l~~~~~~l~iVDavss~g~~~id~~-~~d~~~~ssqK~  186 (349)
T TIGR01364       115 NYTKIPDPSTWE--ISEDAAYVHYCANETIHGVEFR-----ELPDVKNAPLVADMSSNILSRPIDVS-KFGLIYAGAQKN  186 (349)
T ss_pred             CCCCCCCHHhcC--CCCCCCEEEEcCCCCcccEecc-----eecccCCCeEEEEccccccCccCCHH-HccEEEEecccc
Confidence                22455444  3468999999999999999876     66777899999999999998874333 256999999999


Q ss_pred             cccCCCceeeEEEeechhHH
Q 024619          202 IAGHSDVMAGVLAVKGERLA  221 (265)
Q Consensus       202 ~~g~~g~~~G~v~~~~~~~~  221 (265)
                      + ||+|+  |+++.+++.+.
T Consensus       187 l-gP~Gl--g~l~~s~~~~~  203 (349)
T TIGR01364       187 I-GPAGL--TVVIVRKDLLG  203 (349)
T ss_pred             c-CCCce--EEEEECHHHHh
Confidence            9 69995  99988887654

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=99.40  E-value=5.3e-12  Score=108.05  Aligned_cols=156  Identities=26%  Similarity=0.291  Sum_probs=121.4

Q ss_pred             hHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHhcCCCCEEEEcC-----CCCCChHHHHHhhcCCCCeEEEeec---C
Q 024619           56 TRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGD-----DLYGGTDRLLSRVTPKTGVVVKRVN---T  126 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~~~~g~~viv~~-----~~~~~~~~~~~~~~~~~g~~~~~~~---~  126 (265)
                      ....+.+..+...|++++.++++.+.|+. ++.++.+ +.+|+++.     +.+++..    +.++..|.+++++.   .
T Consensus        69 R~~~~~~~~~~~~~aea~~ivnnn~aAVll~~~al~~-~~EvVis~g~lV~gg~~~v~----d~~~~aG~~l~EvG~tn~  143 (395)
T COG1921          69 RLTELAELLCGLTGAEAAAIVNNNAAAVLLTLNALAE-GKEVVVSRGELVEGGAFRVP----DIIRLAGAKLVEVGTTNR  143 (395)
T ss_pred             HHHHHHHHHhcccchhheeeECCcHHHHHHHHhhhcc-CCeEEEEccccccCCCCChh----HHHHHcCCEEEEecccCc
Confidence            35577788888888999999999998876 5555555 55554432     3444454    77788999999986   4


Q ss_pred             CCHHHHHhhcCCCceEEEEecCCCCcccc--ccHHHHHHHHHHcCCEEEEeCCcCCC-----CCcCCCCCCccEEEeccc
Q 024619          127 CDLDEVASAIGPWTKLVWVESPTNPRQQI--CDIRKIAEMAHAHGALLLVDNSIMSP-----VLSRPLELGADIVMHSAT  199 (265)
Q Consensus       127 ~d~~~l~~~~~~~~~~i~~~~~~np~G~~--~~l~~i~~~a~~~~~~li~D~~~~~~-----~~~~~~~~~~di~~~s~s  199 (265)
                      .+..+++.++.+++++++-.+.+|. |..  .+.++++++|+++|+++++|.+.+..     ........|+|++++|..
T Consensus       144 t~~~d~~~AIne~ta~llkV~s~~~-~f~~~l~~~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la~GaDLV~~Sgd  222 (395)
T COG1921         144 THLKDYELAINENTALLLKVHSSNY-GFTGMLSEEELVEIAHEKGLPVIVDLASGALVDKEPDLREALALGADLVSFSGD  222 (395)
T ss_pred             CCHHHHHHHhccCCeeEEEEeeccc-cccccccHHHHHHHHHHcCCCEEEecCCccccccccchhHHHhcCCCEEEEecc
Confidence            4799999999999999887777664 555  46789999999999999999986543     223445679999999999


Q ss_pred             cccccCCCceeeEEEeechhH
Q 024619          200 KFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       200 K~~~g~~g~~~G~v~~~~~~~  220 (265)
                      |.|+||.   .|+++++++.+
T Consensus       223 KllgGPq---aGii~GkKelI  240 (395)
T COG1921         223 KLLGGPQ---AGIIVGKKELI  240 (395)
T ss_pred             hhcCCCc---cceEechHHHH
Confidence            9998885   79999988766

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=99.39  E-value=5.2e-12  Score=116.84  Aligned_cols=153  Identities=13%  Similarity=0.105  Sum_probs=117.6

Q ss_pred             hHHHHHHHHHhHhCCCceEEecchH-HHH-HHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC------
Q 024619           56 TRDALESLLAKLDKADRALCFTSGM-AAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------  127 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~~~i~~~~g~-~al-~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------  127 (265)
                      ...+.++..++.||++...++++|+ .++ .++++++.+||.|++++.+|-+..    ..+...|+++++++..      
T Consensus       196 ~i~eAe~~aA~~fgAd~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~----~aLilsga~PVYl~P~~n~~Gi  271 (713)
T PRK15399        196 PHLEAEEYIARTFGAEQSYIVTNGTSTSNKIVGMYAAPAGSTLLIDRNCHKSLA----HLLMMSDVVPIWLKPTRNALGI  271 (713)
T ss_pred             HHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHhcCCCCEEEeecccHHHHH----HHHHHcCCeeEEecccccccCC
Confidence            4888999999999999888888886 666 478889999999999999998876    4557789999998632      


Q ss_pred             ----C-----HHHHHhhcCC--C---ceEEEEecCCCCccccccHHHHHHHHHHcCCEE-EEeCCcCCCC-----Cc--C
Q 024619          128 ----D-----LDEVASAIGP--W---TKLVWVESPTNPRQQICDIRKIAEMAHAHGALL-LVDNSIMSPV-----LS--R  185 (265)
Q Consensus       128 ----d-----~~~l~~~~~~--~---~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~l-i~D~~~~~~~-----~~--~  185 (265)
                          +     .+.+++++.+  +   ++++++++| +..|.+.|+++|++.|   |+.+ ++||||+.=.     +.  .
T Consensus       272 ~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~p-TYdGi~yd~~~I~~~~---g~~~ilvDEAhgah~~F~p~~~~~s  347 (713)
T PRK15399        272 LGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNS-TYDGLLYNTDWIKQTL---DVPSIHFDSAWVPYTHFHPIYQGKS  347 (713)
T ss_pred             cCCCChhhccHHHHHHHHHhCCCcCCceEEEEECC-CCCceeeCHHHHHHHh---CCCEEEEeccchhhhhcCcccCCcC
Confidence                2     3888888752  2   368888988 4489999999999999   6766 6999986211     21  2


Q ss_pred             CCCC--CccEE---EeccccccccCCCceeeEEEeech
Q 024619          186 PLEL--GADIV---MHSATKFIAGHSDVMAGVLAVKGE  218 (265)
Q Consensus       186 ~~~~--~~di~---~~s~sK~~~g~~g~~~G~v~~~~~  218 (265)
                      +...  +.|.+   +.|.||.+.+..  +++++..+..
T Consensus       348 am~~~~~aD~~i~~tQStHKtL~alT--QaS~iHvk~~  383 (713)
T PRK15399        348 GMSGERVPGKVIFETQSTHKMLAAFS--QASLIHIKGE  383 (713)
T ss_pred             hhhCCCCCCeeeeeeeehhccccccc--hheeeeecCC
Confidence            2222  35665   999999997764  5788888664

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=99.39  E-value=1.2e-11  Score=110.20  Aligned_cols=205  Identities=13%  Similarity=0.128  Sum_probs=129.9

Q ss_pred             cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhC-C--CceEEecchHHHH
Q 024619            9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK-A--DRALCFTSGMAAL   83 (265)
Q Consensus         9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g-~--~~~i~~~~g~~al   83 (265)
                      .+.++++|.+  ++..+|...|.+.++...+...   .....+....++...++.+.+.+... .  +.+.+++||++|+
T Consensus        38 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~---~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~  114 (421)
T PRK09792         38 EGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQ---FTHTAYQIVPYESYVTLAEKINALAPVSGQAKTAFFTTGAEAV  114 (421)
T ss_pred             CCCEEEEccCchhhhcCCCCCHHHHHHHHHHHHh---ccCcccCccCCHHHHHHHHHHHHhCCCCCCceEEEeCChHHHH
Confidence            4567888853  3345898887777775533322   11122222244667788888888763 2  4688889999998


Q ss_pred             HHHHHh---cCCCCEEEEcCCCCCChHHHHHhhcC-----CCCe-----EEEeecCC----------CHHHHHhhcC---
Q 024619           84 AAVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTP-----KTGV-----VVKRVNTC----------DLDEVASAIG---  137 (265)
Q Consensus        84 ~~~~~~---~~~g~~viv~~~~~~~~~~~~~~~~~-----~~g~-----~~~~~~~~----------d~~~l~~~~~---  137 (265)
                      ...+.+   .....+|+....+|++..........     ..+.     .+..++.+          +.+.+++.+.   
T Consensus       115 e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~l~~~~~~~~  194 (421)
T PRK09792        115 ENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDI  194 (421)
T ss_pred             HHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcc
Confidence            633332   22345788888888887533212111     1110     12233322          2366766653   


Q ss_pred             --CCceEEEEecCCCCccccc-c---HHHHHHHHHHcCCEEEEeCCcCC-CCCcC-----CCCCCccEEEeccccccccC
Q 024619          138 --PWTKLVWVESPTNPRQQIC-D---IRKIAEMAHAHGALLLVDNSIMS-PVLSR-----PLELGADIVMHSATKFIAGH  205 (265)
Q Consensus       138 --~~~~~i~~~~~~np~G~~~-~---l~~i~~~a~~~~~~li~D~~~~~-~~~~~-----~~~~~~di~~~s~sK~~~g~  205 (265)
                        +++++|+++..++++|... |   +++|.++|++||+++|+||++.. +..+.     ......|+  .+++|.++  
T Consensus       195 ~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pDi--~t~gK~l~--  270 (421)
T PRK09792        195 EAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADKPDL--MTMAKSLA--  270 (421)
T ss_pred             CCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHhcCCCCcE--EEeehhhc--
Confidence              4688999999999999764 5   89999999999999999999762 22221     11234675  57899994  


Q ss_pred             CCceeeEEEeechhH
Q 024619          206 SDVMAGVLAVKGERL  220 (265)
Q Consensus       206 ~g~~~G~v~~~~~~~  220 (265)
                      +|++.|+++.+++..
T Consensus       271 ~G~pigav~~~~~i~  285 (421)
T PRK09792        271 GGMPLSGVVGNANIM  285 (421)
T ss_pred             CCCceEEEEEcHHHH
Confidence            358899998876543

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=99.39  E-value=4.4e-12  Score=108.42  Aligned_cols=160  Identities=22%  Similarity=0.267  Sum_probs=125.4

Q ss_pred             CCh-hHHHHHHHHHhHhCCCce-EEecchHHH----HHHHHHhc-C----CCCEEEEcCCCCCChHHHHHhhcCCCCeEE
Q 024619           53 GNP-TRDALESLLAKLDKADRA-LCFTSGMAA----LAAVTHLL-G----TGEEIVAGDDLYGGTDRLLSRVTPKTGVVV  121 (265)
Q Consensus        53 g~~-~~~~l~~~l~~~~g~~~~-i~~~~g~~a----l~~~~~~~-~----~g~~viv~~~~~~~~~~~~~~~~~~~g~~~  121 (265)
                      |.. ...+|+++|+++.|.|++ +-.++|+++    +.++.... .    ..+.++|++-+|....    ..+...|.+|
T Consensus       106 G~l~li~~Lq~~L~~ITG~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNP----ASAam~G~~V  181 (496)
T COG1003         106 GYLELIYELQEWLKEITGMDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNP----ASAAMAGFKV  181 (496)
T ss_pred             HHHHHHHHHHHHHHHhcCCceeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCCh----hhHhhcCceE
Confidence            554 488999999999999964 445566554    33444432 2    2457999999999887    6778899999


Q ss_pred             EeecCC-----CHHHHHhhcCCCceEEEEecCCCCcccc-ccHHHHHHHHHHcCCEEEEeCCcCCCCC--cCCCCCCccE
Q 024619          122 KRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQI-CDIRKIAEMAHAHGALLLVDNSIMSPVL--SRPLELGADI  193 (265)
Q Consensus       122 ~~~~~~-----d~~~l~~~~~~~~~~i~~~~~~np~G~~-~~l~~i~~~a~~~~~~li~D~~~~~~~~--~~~~~~~~di  193 (265)
                      +.|+.+     |+++|++.+.+++.++++++|+. .|.. .++.+|+++.+++|..|..|++.--..+  ..|.+.|+|+
T Consensus       182 V~V~~~~~G~VDlddLk~k~~~~~AalMiTnPsT-~GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~rPGd~G~DV  260 (496)
T COG1003         182 VVVKCDENGNVDLDDLRAKAEDNLAALMITNPST-LGVFEEDIREICEIVHEAGGQVYYDGANLNAIVGLARPGDMGFDV  260 (496)
T ss_pred             EEEecCCCCCccHHHHHHHhccceeEEEeccCcc-cccchhhHHHHHHHHHHcCCEEEecCcchhhhhccccccccccce
Confidence            999865     89999999999999999999955 7777 4799999999999999999999765544  3688999999


Q ss_pred             EEeccccccccCCCc---eeeEEEeec
Q 024619          194 VMHSATKFIAGHSDV---MAGVLAVKG  217 (265)
Q Consensus       194 ~~~s~sK~~~g~~g~---~~G~v~~~~  217 (265)
                      +-..+||+|+.|.|-   -.|-|..++
T Consensus       261 ~HlNLHKTF~iPHGGGGPG~GPvgVk~  287 (496)
T COG1003         261 VHLNLHKTFCIPHGGGGPGAGPVGVKA  287 (496)
T ss_pred             EEeecccccccCCCCCCCCCCceehHh
Confidence            999999999755442   024555554

>PLN02880 tyrosine decarboxylase

Probab=99.38  E-value=2.7e-12  Score=116.00  Aligned_cols=159  Identities=16%  Similarity=0.159  Sum_probs=113.9

Q ss_pred             hhHHHHHHHHHhHhCCCc---------eEEecchHHHH-HHHHHh----cCC------CC-EEEEcCCCCCChHHHHHhh
Q 024619           55 PTRDALESLLAKLDKADR---------ALCFTSGMAAL-AAVTHL----LGT------GE-EIVAGDDLYGGTDRLLSRV  113 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~---------~i~~~~g~~al-~~~~~~----~~~------g~-~viv~~~~~~~~~~~~~~~  113 (265)
                      ..-+++-+++++++|.++         .+++++|++++ .++...    ++.      .. .|++++-+|.+..    ++
T Consensus       122 ~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv~----Ka  197 (490)
T PLN02880        122 ELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSALQ----KA  197 (490)
T ss_pred             HHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHHH----HH
Confidence            346678899999998653         56777778765 333221    111      22 3556777877775    55


Q ss_pred             cCCCCeE---EEeecC-------CCHHHHHhhcCC------CceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCC
Q 024619          114 TPKTGVV---VKRVNT-------CDLDEVASAIGP------WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS  177 (265)
Q Consensus       114 ~~~~g~~---~~~~~~-------~d~~~l~~~~~~------~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~  177 (265)
                      +...|+.   ++.++.       -|+++|++++.+      .+-+|+.+.....+|.+.|+++|.++|+++|+++++|.+
T Consensus       198 a~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwlHVDaA  277 (490)
T PLN02880        198 CQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAA  277 (490)
T ss_pred             HHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEEEEehh
Confidence            5666663   444443       278888888852      245677777888999999999999999999999999999


Q ss_pred             cCCCCCcCC------CC-CCccEEEeccccccccCCCceeeEEEeechh
Q 024619          178 IMSPVLSRP------LE-LGADIVMHSATKFIAGHSDVMAGVLAVKGER  219 (265)
Q Consensus       178 ~~~~~~~~~------~~-~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~  219 (265)
                      |+.+....+      .. .++|.++.++|||+..|-+  +|+++.++..
T Consensus       278 ~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~--~g~llvr~~~  324 (490)
T PLN02880        278 YAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFD--CSLLWVKDRN  324 (490)
T ss_pred             hHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCcc--EEEEEEeCHH
Confidence            997755321      12 3579999999999998877  6988888643

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=99.38  E-value=1.4e-11  Score=111.65  Aligned_cols=233  Identities=16%  Similarity=0.151  Sum_probs=138.3

Q ss_pred             cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCC-C-CChhHHHHHHHHHhHhC-C--CceEEecchHH
Q 024619            9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTR-S-GNPTRDALESLLAKLDK-A--DRALCFTSGMA   81 (265)
Q Consensus         9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~-~-g~~~~~~l~~~l~~~~g-~--~~~i~~~~g~~   81 (265)
                      .+.++|+|.+  ++.++|...|.+..+...+...    ..+.... . .++...++++.|.+.+. .  +.+.+++||++
T Consensus        87 dG~~ylD~~sg~~~~~lGh~hp~v~~Av~~ql~~----~~~~~~~~~~~~~~~~~lae~L~~~~~~~~~~~v~f~~SGsE  162 (504)
T PLN02760         87 NGKKYLDALAGLWCTALGGSEPRLVAAATEQLNK----LPFYHSFWNRTTKPSLDLAKELLEMFTARKMGKVFFTNSGSE  162 (504)
T ss_pred             CCCEEEEcCcCHHhcccCCCCHHHHHHHHHHHhh----ccceecccccCcHHHHHHHHHHHhhcCCCCCCEEEEeCChHH
Confidence            3578999974  4789997777766665433222    1111111 1 33567888899888753 3  24778899999


Q ss_pred             HHHHHHHhc--------CC-CCEEEEcCCCCCChHHHHHhhcC------CCCeE---EEeecCCC---------------
Q 024619           82 ALAAVTHLL--------GT-GEEIVAGDDLYGGTDRLLSRVTP------KTGVV---VKRVNTCD---------------  128 (265)
Q Consensus        82 al~~~~~~~--------~~-g~~viv~~~~~~~~~~~~~~~~~------~~g~~---~~~~~~~d---------------  128 (265)
                      |+.+.+.+.        .+ .++|+..+.+|++.......+..      .++..   +..++.++               
T Consensus       163 A~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  242 (504)
T PLN02760        163 ANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPGETEEEFS  242 (504)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCCcccccCCCCCcHHHHH
Confidence            986333322        12 35788888888877532111111      11100   22222111               


Q ss_pred             ---HHHHHhhcC----CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCc-CCCCCcC-----CCCCCc
Q 024619          129 ---LDEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSI-MSPVLSR-----PLELGA  191 (265)
Q Consensus       129 ---~~~l~~~~~----~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~-~~~~~~~-----~~~~~~  191 (265)
                         .+++++.+.    .++++|+++......|.+.+    +++|.++|++||+++|+||++ +.|..+.     .....+
T Consensus       243 ~~~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv~P  322 (504)
T PLN02760        243 TRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKYNIKP  322 (504)
T ss_pred             HHHHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhHHHhcCCCC
Confidence               133555442    45889999999888888877    999999999999999999998 5655542     223357


Q ss_pred             cEEEeccccccccCCCceeeEEEeechhHHHHHHH-------HHHhccCCCChhHHHHHHhccCc
Q 024619          192 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-------LQNAEGSGLAPFDCWICLRGVKT  249 (265)
Q Consensus       192 di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~  249 (265)
                      |++  +++|.+++ +.+..|.++++++ +.+.+..       +....+..-+|..++..++.|+.
T Consensus       323 Div--tlgK~lgg-G~~PigAv~~~~~-i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~  383 (504)
T PLN02760        323 DLV--SLAKALSS-AYMPIGAVLVSPE-ISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKI  383 (504)
T ss_pred             cEE--EecccccC-CccccceEeecHH-HHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHH
Confidence            875  57999954 2223566767654 3343321       11122333456666665555543

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=99.38  E-value=3e-12  Score=114.22  Aligned_cols=154  Identities=25%  Similarity=0.322  Sum_probs=124.1

Q ss_pred             HHHHHHHHHhHhCCCceEEecchH-HHH-HHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-------
Q 024619           57 RDALESLLAKLDKADRALCFTSGM-AAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------  127 (265)
Q Consensus        57 ~~~l~~~l~~~~g~~~~i~~~~g~-~al-~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------  127 (265)
                      ..+.++..++.+|++...++.+|+ .++ .++++++.+||.|++++++|-+....    .-..|+.++++...       
T Consensus        72 i~eAqe~aA~~fgAd~tyFvvNGTS~ank~vi~a~~~~GD~VLvdRN~HKSi~~g----lilaGa~Pvyl~p~~np~~gi  147 (557)
T COG1982          72 IKEAQELAARVFGADHTYFVVNGTSTANKAVINAVLTPGDKVLVDRNCHKSIHHG----LILAGATPVYLEPSRNPLYGI  147 (557)
T ss_pred             HHHHHHHHHHHhCCCceEEEECCccHHHHHHHHhhcCCCCEEEecCCccHHHHHH----HHHcCCceEEecCCCCccccc
Confidence            889999999999999888888886 777 58899999999999999999888743    46688898887632       


Q ss_pred             ----CHHHHHhhcC--CCc-eEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCC-----Cc-CCCCCCccEE
Q 024619          128 ----DLDEVASAIG--PWT-KLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV-----LS-RPLELGADIV  194 (265)
Q Consensus       128 ----d~~~l~~~~~--~~~-~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~-----~~-~~~~~~~di~  194 (265)
                          +.+.+.+++.  +.. +++++.+|.. .|.++++++|++.+++.++++.+|++|..-.     .+ +..+.+.|++
T Consensus       148 ~ggI~~~~~~~~l~~~~~~~k~~vitnpTY-dGv~~n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~~~~~~~~~~~  226 (557)
T COG1982         148 IGGIPLETFKEALLAHPDAEKLAVITNPTY-DGVCYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESALNGGADFV  226 (557)
T ss_pred             cCCCCHHHHHHHHHhChhhheeEEEecCcc-ceEeecHHHHHHHHhhcCceEEhhhcCcccccccccCcchhhhcCceEE
Confidence                6788888764  345 7888888855 7999999999999999999999999986322     22 2334678999


Q ss_pred             EeccccccccCCCceeeEEEeec
Q 024619          195 MHSATKFIAGHSDVMAGVLAVKG  217 (265)
Q Consensus       195 ~~s~sK~~~g~~g~~~G~v~~~~  217 (265)
                      +.|.||.+++..  ++.++..++
T Consensus       227 tqS~HK~l~alS--QaS~iHv~~  247 (557)
T COG1982         227 TQSTHKLLAALS--QASMIHVKD  247 (557)
T ss_pred             Eechhhhhhhhh--hhHHHhhCC
Confidence            999999986653  567887775

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=99.38  E-value=2.8e-11  Score=108.51  Aligned_cols=232  Identities=14%  Similarity=0.114  Sum_probs=137.9

Q ss_pred             cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCC---CceEEecchHHHH
Q 024619            9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA---DRALCFTSGMAAL   83 (265)
Q Consensus         9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~---~~~i~~~~g~~al   83 (265)
                      .+.++++|.++  +..+|...|.+..+..-+...   ..........++...++.+.+.+....   +.+.+++||++|+
T Consensus        40 dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~---~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~SGseA~  116 (445)
T PRK08593         40 DGKTYIDLLASASSQNVGHAPPRVVEAIKAQADK---FIHYTPAYMYHEPLVRLAKKLCELAPGDFEKRVTFGLSGSDAN  116 (445)
T ss_pred             CCCEEEECCccHHhhcCCCCCHHHHHHHHHHHHh---ccCccccccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHH
Confidence            45678998543  445899877777665432221   111111112456788899999998743   3566778999998


Q ss_pred             HHHHHh---cCCCCEEEEcCCCCCChHHHHHhhcCC-------CC---eEEEeecCCC-----------------HHHHH
Q 024619           84 AAVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTPK-------TG---VVVKRVNTCD-----------------LDEVA  133 (265)
Q Consensus        84 ~~~~~~---~~~g~~viv~~~~~~~~~~~~~~~~~~-------~g---~~~~~~~~~d-----------------~~~l~  133 (265)
                      ...+.+   .....+|+..+.+|++.......+...       .+   ..+..++.++                 +++++
T Consensus       117 e~AiklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  196 (445)
T PRK08593        117 DGIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLK  196 (445)
T ss_pred             HHHHHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHHHHHHH
Confidence            633332   223456888888888875332111110       00   1122233221                 13344


Q ss_pred             hhc-----CCCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCc-CCCCCcC-----CCCCCccEEEecc
Q 024619          134 SAI-----GPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSI-MSPVLSR-----PLELGADIVMHSA  198 (265)
Q Consensus       134 ~~~-----~~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~-~~~~~~~-----~~~~~~di~~~s~  198 (265)
                      +.+     .+++++|+++...+..|.+.+    +++|.++|++||+++|+||++ +.|..+.     .....+|++  ++
T Consensus       197 ~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~a~~~~gv~pDi~--t~  274 (445)
T PRK08593        197 EMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNITPDLM--SF  274 (445)
T ss_pred             HHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHHHHHhcCCCCCEe--ee
Confidence            333     256899999999988888765    899999999999999999998 3443321     123346766  67


Q ss_pred             ccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619          199 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       199 sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      +|.+++  |+.+|+++++++.+ +.+.......+...++..++..+..|+
T Consensus       275 gK~l~~--G~p~gav~~~~~i~-~~~~~~~~~~T~~~~pl~~aaa~a~l~  321 (445)
T PRK08593        275 GKSLAG--GMPMSAIVGRKEIM-ESLEAPAHLFTTGANPVSCAAALATID  321 (445)
T ss_pred             cccccC--CcccEEEEEcHHHH-hhhccCCCCCCCCCCHHHHHHHHHHHH
Confidence            999953  46789988876543 333211222344455655554444443

>PRK07046 aminotransferase; Validated

Probab=99.38  E-value=2.6e-11  Score=108.80  Aligned_cols=201  Identities=17%  Similarity=0.109  Sum_probs=134.8

Q ss_pred             ceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-HH
Q 024619           10 STLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AV   86 (265)
Q Consensus        10 ~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~   86 (265)
                      +.++|+|.++  ...+|...|.+..+..-+...    .. .+ ...++...++.+.+.+..+.+.+.+.+||++|.. ++
T Consensus        74 G~~yiD~~~g~g~~~lGh~~p~i~~Av~~q~~~----~~-~~-~~~~~~~~~lAe~l~~~~~~~~v~F~nSGtEA~e~Al  147 (453)
T PRK07046         74 GHRYDDFCLGDTGAMFGHSPAPVARALAEQARR----GL-TT-MLPSEDAAWVGEELARRFGLPYWQVATTATDANRFVL  147 (453)
T ss_pred             CCEEEEecccccccccCCCCHHHHHHHHHHHHh----CC-CC-CCCCHHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHH
Confidence            4678888532  344888888877776533221    11 11 1134567778888888888778999999998875 43


Q ss_pred             HHh--cCCCCEEEEcCCCCCChHHHHHhhc---------CCCCe------EEEeecCCCHHHHHhhcC-CCceEEEEecC
Q 024619           87 THL--LGTGEEIVAGDDLYGGTDRLLSRVT---------PKTGV------VVKRVNTCDLDEVASAIG-PWTKLVWVESP  148 (265)
Q Consensus        87 ~~~--~~~g~~viv~~~~~~~~~~~~~~~~---------~~~g~------~~~~~~~~d~~~l~~~~~-~~~~~i~~~~~  148 (265)
                      ...  ....++|+....+|++.........         ...|.      .+..++..|++.+++.+. .++.+|+++..
T Consensus       148 rlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~nd~~~l~~~l~~~~vAavi~EPi  227 (453)
T PRK07046        148 RWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVEFNDLAALEAALADGDVAAVLAEPA  227 (453)
T ss_pred             HHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeCCCCHHHHHHHhCCCCeEEEEECCC
Confidence            322  3345778888888988742211110         00111      234455668999998885 56889999998


Q ss_pred             CCCcccccc----HHHHHHHHHHcCCEEEEeCCcC----CCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhH
Q 024619          149 TNPRQQICD----IRKIAEMAHAHGALLLVDNSIM----SPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       149 ~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~----~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                      ....|.+.+    ++++.++|++||+++|+||++.    .|-........+|+++  ++|.++|  |+.+|.++++++.+
T Consensus       228 ~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~tfr~g~Gg~~~~~gv~PDi~t--~gK~lgg--G~Pi~av~g~~~i~  303 (453)
T PRK07046        228 MTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHTISSGPGGYTRAHGLEPDFLV--VGKPIAG--GVPCAVYGFSAELA  303 (453)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccCccCCcchhHHhCCCcccee--ehhhhcC--CCcceeeeehHHHH
Confidence            877787754    7999999999999999999984    3322222344678885  7999964  47788888877544

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.37  E-value=2.7e-11  Score=108.10  Aligned_cols=205  Identities=14%  Similarity=0.090  Sum_probs=128.2

Q ss_pred             cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhC--CCceEEecchHHHHH
Q 024619            9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK--ADRALCFTSGMAALA   84 (265)
Q Consensus         9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g--~~~~i~~~~g~~al~   84 (265)
                      .+.++++|.++  +..+|...|.+..+..-+...   .....+....++...++.+.+.+...  .+.+.+.+||++|+.
T Consensus        40 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~---~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e  116 (423)
T PRK05964         40 DGRELIDAISSWWVATHGHNHPYIDQAIREQLDR---LDHVIFAGFTHEPAERLAQRLVALTPGGLDHVFFSDSGSVAVE  116 (423)
T ss_pred             CCCEEEEcchhHHhccCCCCCHHHHHHHHHHHhh---CCCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHH
Confidence            45678888643  556898887777665422221   11111111234567788899988874  456888899999986


Q ss_pred             HHHHhc---------CCCCEEEEcCCCCCChHHHHHhhcCC-----------CCeEEEeecCCC-----HHHHHhhcC--
Q 024619           85 AVTHLL---------GTGEEIVAGDDLYGGTDRLLSRVTPK-----------TGVVVKRVNTCD-----LDEVASAIG--  137 (265)
Q Consensus        85 ~~~~~~---------~~g~~viv~~~~~~~~~~~~~~~~~~-----------~g~~~~~~~~~d-----~~~l~~~~~--  137 (265)
                      ....+.         ....+|+....+|++....+..+...           .+...+..+..|     .+++++.+.  
T Consensus       117 ~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~~  196 (423)
T PRK05964        117 VALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATLDALEALLEKH  196 (423)
T ss_pred             HHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchhHHHHHHHHHHHHHhC
Confidence            333321         12367888888898875443222111           112222233334     677777773  


Q ss_pred             -CCceEEEEec-CCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CCCCCccEEEeccccccccC
Q 024619          138 -PWTKLVWVES-PTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATKFIAGH  205 (265)
Q Consensus       138 -~~~~~i~~~~-~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~~~~~di~~~s~sK~~~g~  205 (265)
                       +++++|+++. .+...|...+    +++|.++|++||+++|+||+|. .|..+.     .....+|++  +++|++++ 
T Consensus       197 ~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~v~pDi~--~~~K~l~g-  273 (423)
T PRK05964        197 AGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLFACEQAGVSPDIM--CLSKGLTG-  273 (423)
T ss_pred             CCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhHHHhcCCCCCee--eeehhhhc-
Confidence             4678899987 5777777653    8999999999999999999984 332221     123356775  56899953 


Q ss_pred             CCceeeEEEeechh
Q 024619          206 SDVMAGVLAVKGER  219 (265)
Q Consensus       206 ~g~~~G~v~~~~~~  219 (265)
                      +.+..|+++.+++.
T Consensus       274 G~~p~~av~~~~~i  287 (423)
T PRK05964        274 GYLPLAATLCTAEI  287 (423)
T ss_pred             CcccceEEEEcHHH
Confidence            33567887776543

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=99.37  E-value=6.5e-12  Score=112.06  Aligned_cols=158  Identities=23%  Similarity=0.254  Sum_probs=121.6

Q ss_pred             hHHHHHHHHHhHhCCC---ceEEecchHHHHH-HHHHh---cC------CC----C-EEEEcCCCCCChHHHHHhhcCCC
Q 024619           56 TRDALESLLAKLDKAD---RALCFTSGMAALA-AVTHL---LG------TG----E-EIVAGDDLYGGTDRLLSRVTPKT  117 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~---~~i~~~~g~~al~-~~~~~---~~------~g----~-~viv~~~~~~~~~~~~~~~~~~~  117 (265)
                      .-+++..+++++++.+   ...++++|++|+. ++++.   ..      .+    . .|+++.-.|.++.    +.+...
T Consensus       102 ~E~~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~~~~P~ii~s~~aH~s~~----Kaa~~l  177 (460)
T COG0076         102 LEERVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFE----KAARYL  177 (460)
T ss_pred             HHHHHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccccCCCCeEEecCcchhHHH----HHHHHh
Confidence            3667778888888874   4778888887753 44332   10      11    1 5888888888886    666777


Q ss_pred             CeEEEeecCC------CHHHHHhhcCCCceE--EEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc--CC-
Q 024619          118 GVVVKRVNTC------DLDEVASAIGPWTKL--VWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS--RP-  186 (265)
Q Consensus       118 g~~~~~~~~~------d~~~l~~~~~~~~~~--i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~--~~-  186 (265)
                      |+++..++..      |++++++++.+++..  |+......++|.+.|+++|.++|+++++++++|.+++....+  .+ 
T Consensus       178 G~~~~~v~~~~~~~~id~~~l~~~i~~~t~~g~vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~  257 (460)
T COG0076         178 GLGLRRVPTVPTDYRIDVDALEEAIDENTIGGVVVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPD  257 (460)
T ss_pred             CCCceeEEeccCccccCHHHHHHHHHhhccCceEEEEecCCCCCccCCHHHHHHHHHHcCCcEEEEccccceeecccCcc
Confidence            8777777643      799999999877766  888888899999999999999999999999999999865542  11 


Q ss_pred             -----CCCCccEEEeccccccccCCCceeeEEEeechh
Q 024619          187 -----LELGADIVMHSATKFIAGHSDVMAGVLAVKGER  219 (265)
Q Consensus       187 -----~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~  219 (265)
                           ...++|-++.++|||+..|.|  +|+++.++++
T Consensus       258 ~~~~f~l~~vdSIt~d~HK~g~aP~~--~G~il~rd~e  293 (460)
T COG0076         258 GRWDFGLEGVDSITVDGHKYGLAPIG--CGVVLFRDEE  293 (460)
T ss_pred             chhhcCCCCceEEEECcccccCCCCC--ceEEEEECHH
Confidence                 122578899999999999988  6999899884

>PRK06541 hypothetical protein; Provisional

Probab=99.37  E-value=2.1e-11  Score=109.64  Aligned_cols=232  Identities=18%  Similarity=0.126  Sum_probs=139.3

Q ss_pred             cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccC-CCCChhHHHHHHHHHhHhCC--CceEEecchHHHH
Q 024619            9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYT-RSGNPTRDALESLLAKLDKA--DRALCFTSGMAAL   83 (265)
Q Consensus         9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~-~~g~~~~~~l~~~l~~~~g~--~~~i~~~~g~~al   83 (265)
                      .+.++|+|.+  ++..+|...|.+.++..-+...    ..+... ...++...++.+++.+....  +.+.+++||++|+
T Consensus        50 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~q~~~----~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseAv  125 (460)
T PRK06541         50 RGKRYLDGLAGLFVVQVGHGRAELAEAAAKQAGT----LAFFPLWSYAHPPAIELAERLAALAPGDLNRVFFTTGGSEAV  125 (460)
T ss_pred             CCCEEEECCccHHhccCCCCCHHHHHHHHHHHhh----CcCccccccCCHHHHHHHHHHHHhCCCCcCEEEEcCCcHHHH
Confidence            4567888863  2456999888888776533322    111111 12446677888888887643  4688888999998


Q ss_pred             HHHHHh---c---C---CCCEEEEcCCCCCChHHHHHhhcCCC------C---eEEEeecCC----------C-------
Q 024619           84 AAVTHL---L---G---TGEEIVAGDDLYGGTDRLLSRVTPKT------G---VVVKRVNTC----------D-------  128 (265)
Q Consensus        84 ~~~~~~---~---~---~g~~viv~~~~~~~~~~~~~~~~~~~------g---~~~~~~~~~----------d-------  128 (265)
                      ...+.+   .   .   ...+|+....+|++............      +   ..+..++.+          +       
T Consensus       126 e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  205 (460)
T PRK06541        126 ESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRW  205 (460)
T ss_pred             HHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCccccccccCCCHHHHHHH
Confidence            533322   1   1   24678888888887754321111100      0   011222211          1       


Q ss_pred             -HHHHHhhcC----CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCc-CCCCCcCC-----CCCCccE
Q 024619          129 -LDEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSI-MSPVLSRP-----LELGADI  193 (265)
Q Consensus       129 -~~~l~~~~~----~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~-~~~~~~~~-----~~~~~di  193 (265)
                       ++.+++.+.    .++.+|+++..+++.|.+.+    +++|.++|++||+++|+||+| +.|..+..     .....|+
T Consensus       206 ~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~~a~~~~gv~PDi  285 (460)
T PRK06541        206 AADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMFGCERFGYVPDI  285 (460)
T ss_pred             HHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchhhhhhhcCCCCCE
Confidence             245666553    45778899988999999877    999999999999999999999 55544422     2335787


Q ss_pred             EEeccccccccCCCc-eeeEEEeechhHHHHHHHH---HHhccCCCChhHHHHHHhccC
Q 024619          194 VMHSATKFIAGHSDV-MAGVLAVKGERLAKELYFL---QNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       194 ~~~s~sK~~~g~~g~-~~G~v~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      +  +++|.+++  |+ ..|.++.+++.........   ........+|..++..++.++
T Consensus       286 v--t~gK~l~~--G~~pigav~~~~~i~~~~~~~~~~~~~~~T~~gnp~~~aaala~l~  340 (460)
T PRK06541        286 I--TCAKGITS--GYSPLGAMIASDRLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLD  340 (460)
T ss_pred             E--EecccccC--CccceeEEEEcHHHHHHhhcCCCccccCCCCCCCHHHHHHHHHHHH
Confidence            7  48999953  33 5777777775543322110   111233445566555544444

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=99.37  E-value=1e-11  Score=110.67  Aligned_cols=229  Identities=14%  Similarity=0.150  Sum_probs=138.8

Q ss_pred             cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhC-C--CceEEecchHHHH
Q 024619            9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK-A--DRALCFTSGMAAL   83 (265)
Q Consensus         9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g-~--~~~i~~~~g~~al   83 (265)
                      .+.++++|.++  +..+|...|.+..+..-+..+   .....+....++...++.+.+.+... .  +.+.+.+||++|+
T Consensus        31 dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~ql~~---~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~  107 (420)
T TIGR00700        31 DGNRLIDFASGIAVLNIGHSHPRVVDAVRTQVAE---FTHTCFMVTPYEGYVALAEKLNRIAPGSGPKKSVFFNSGAEAV  107 (420)
T ss_pred             CCCEEEECccCHHhccCCCCCHHHHHHHHHHHHh---ccCccccccCChHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHH
Confidence            35678888543  455888888877775433222   11222222344567788888888763 2  4688889999998


Q ss_pred             HHHHHh---cCCCCEEEEcCCCCCChHHHHHhhcC-----CCCe-----EEEeecCC----------------CHHHHHh
Q 024619           84 AAVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTP-----KTGV-----VVKRVNTC----------------DLDEVAS  134 (265)
Q Consensus        84 ~~~~~~---~~~g~~viv~~~~~~~~~~~~~~~~~-----~~g~-----~~~~~~~~----------------d~~~l~~  134 (265)
                      .+.+.+   .....+|+....+|++.......+..     ..+.     .+..++.+                +++.+++
T Consensus       108 e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (420)
T TIGR00700       108 ENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARA  187 (420)
T ss_pred             HHHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhHHHHHHHHHH
Confidence            633332   23346688888888887543222111     1111     11222221                1345555


Q ss_pred             hc-----CCCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCC-CCCc-----CCCCCCccEEEeccc
Q 024619          135 AI-----GPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLS-----RPLELGADIVMHSAT  199 (265)
Q Consensus       135 ~~-----~~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~~-~~~~-----~~~~~~~di~~~s~s  199 (265)
                      .+     .+++.+|+++.....+|.+.+    +++|.++|++||+++|+||+|.. +..+     .......|++  +++
T Consensus       188 ~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~~a~~~~~~~pDi~--~ls  265 (420)
T TIGR00700       188 IFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFACEHEGPEPDLI--TTA  265 (420)
T ss_pred             HHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchhHHHhhcCCCCCEE--Eee
Confidence            44     256889999998888888765    89999999999999999999863 2222     1223346765  589


Q ss_pred             cccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHh
Q 024619          200 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR  245 (265)
Q Consensus       200 K~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (265)
                      |.++  +|+++|+++.+++.+ +.............++..++..+.
T Consensus       266 K~l~--~G~pig~v~~~~~i~-~~~~~~~~~~T~~~~pl~~aaa~a  308 (420)
T TIGR00700       266 KSLA--DGLPLSGVTGRAEIM-DAPAPGGLGGTYAGNPLACAAALA  308 (420)
T ss_pred             cccc--CCcceEEEEecHHHH-hhcCCCCcCCCCCcCHHHHHHHHH
Confidence            9994  469999999876543 322211222333445555555433

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=99.37  E-value=2.1e-11  Score=109.17  Aligned_cols=205  Identities=15%  Similarity=0.180  Sum_probs=127.0

Q ss_pred             cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhC--CCceEEecchHHHHH
Q 024619            9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK--ADRALCFTSGMAALA   84 (265)
Q Consensus         9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g--~~~~i~~~~g~~al~   84 (265)
                      .+.++++|.+  ++..+|...|.+.++...+.........  + ...++...++.+++.++..  .+.+.+.+||++|+.
T Consensus        44 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~--~-~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e  120 (442)
T PRK13360         44 DGRRVLDGTAGLWCVNAGHGRPEIVEAVRAQAGELDYAPA--F-QMGHPKAFELANRIAEIAPGGLNHVFFTNSGSESVD  120 (442)
T ss_pred             CCCEEEECchhHHHhccCCCCHHHHHHHHHHHHhCCCccc--C-CcCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHH
Confidence            3467888853  2345888888888776533322110011  1 1135667788888988863  456888899999986


Q ss_pred             HHHHh---c-----CC-CCEEEEcCCCCCChHHHHHhhcCC------CC---eEEEeecCC------------------C
Q 024619           85 AVTHL---L-----GT-GEEIVAGDDLYGGTDRLLSRVTPK------TG---VVVKRVNTC------------------D  128 (265)
Q Consensus        85 ~~~~~---~-----~~-g~~viv~~~~~~~~~~~~~~~~~~------~g---~~~~~~~~~------------------d  128 (265)
                      ..+.+   .     .+ ..+|+....+|++.......+...      ++   ..+..++..                  .
T Consensus       121 ~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  200 (442)
T PRK13360        121 TALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEHGAEL  200 (442)
T ss_pred             HHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhccccCCChHHHHHHH
Confidence            33322   1     12 357888888888864321111100      01   112222221                  1


Q ss_pred             HHHHHhhcC----CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCc-CCCCCcCC-----CCCCccEE
Q 024619          129 LDEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSI-MSPVLSRP-----LELGADIV  194 (265)
Q Consensus       129 ~~~l~~~~~----~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~-~~~~~~~~-----~~~~~di~  194 (265)
                      .+++++.+.    +++.+|+++..+...|.+.+    +++|.++|++||+++|+||++ +.|..+..     ....+|++
T Consensus       201 ~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv  280 (442)
T PRK13360        201 ADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQYFGVTPDLL  280 (442)
T ss_pred             HHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCcee
Confidence            345666653    46889999999988899877    999999999999999999998 55544322     23356876


Q ss_pred             EeccccccccCCCceeeEEEeechh
Q 024619          195 MHSATKFIAGHSDVMAGVLAVKGER  219 (265)
Q Consensus       195 ~~s~sK~~~g~~g~~~G~v~~~~~~  219 (265)
                        +++|.+++ +.+..|.++++++.
T Consensus       281 --t~gK~l~g-G~~P~gav~~~~~i  302 (442)
T PRK13360        281 --TCAKGLTN-GAIPMGAVFVSSEI  302 (442)
T ss_pred             --eeeecccc-CccceEEEEEcHHH
Confidence              67999954 22345667666643

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=99.37  E-value=2.7e-11  Score=107.66  Aligned_cols=204  Identities=15%  Similarity=0.138  Sum_probs=129.6

Q ss_pred             CcceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CChhHHHHHHHHHhHh--C--CC-ceEEe-cc
Q 024619            8 GVSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLD--K--AD-RALCF-TS   78 (265)
Q Consensus         8 ~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~--g--~~-~~i~~-~~   78 (265)
                      ..+.++|+|.+  ++..+|..+|.+..+..-+...    ..+..+.. .++...++.+++.+..  +  .. .+.++ +|
T Consensus        32 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~----~~~~~~~~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~s  107 (412)
T TIGR02407        32 EDGKEYIDFFAGAGALNYGHNNPKLKQALIDYLAD----DGIIHSLDMATEAKREFLETFNEIILKPRGLDYKVQFPGPT  107 (412)
T ss_pred             CCCCEEEEcccchhhccCCCCCHHHHHHHHHHHhh----ccceeccccCcHHHHHHHHHHHHhccCccCCCceEEEeCCC
Confidence            34578899854  3445899988888775432221    11111111 3456778888888763  2  22 34454 79


Q ss_pred             hHHHHHHHHHh---cCCCCEEEEcCCCCCChHHHHHhhcC------CCC---eEEEeecCC--------CHHHHHhhcC-
Q 024619           79 GMAALAAVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTP------KTG---VVVKRVNTC--------DLDEVASAIG-  137 (265)
Q Consensus        79 g~~al~~~~~~---~~~g~~viv~~~~~~~~~~~~~~~~~------~~g---~~~~~~~~~--------d~~~l~~~~~-  137 (265)
                      |++|+...+.+   ...+.+|+....+|++..........      ..+   ..+..+|.+        +++.+++.+. 
T Consensus       108 GseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~  187 (412)
T TIGR02407       108 GTNAVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLED  187 (412)
T ss_pred             chHHHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHHHh
Confidence            99998643333   23346788888888887644322211      111   122334432        3566776664 


Q ss_pred             -----CCceEEEEecCCCCccccc-c---HHHHHHHHHHcCCEEEEeCCcC-CCCCc-----CCCCCCccEEEecccccc
Q 024619          138 -----PWTKLVWVESPTNPRQQIC-D---IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADIVMHSATKFI  202 (265)
Q Consensus       138 -----~~~~~i~~~~~~np~G~~~-~---l~~i~~~a~~~~~~li~D~~~~-~~~~~-----~~~~~~~di~~~s~sK~~  202 (265)
                           +++++|+++...+..|.+. |   +++|.++|++||+++|+||++. .|..+     ......+|+++  ++|++
T Consensus       188 ~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v~PDi~~--~~K~l  265 (412)
T TIGR02407       188 SSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIEPDIVC--LSKSI  265 (412)
T ss_pred             ccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCCCCCEEE--echhc
Confidence                 3578999999999888863 2   7999999999999999999985 33222     22344678774  68998


Q ss_pred             ccCCCceeeEEEeech
Q 024619          203 AGHSDVMAGVLAVKGE  218 (265)
Q Consensus       203 ~g~~g~~~G~v~~~~~  218 (265)
                       ++.|++.|+++.+++
T Consensus       266 -g~~G~pigav~~~~~  280 (412)
T TIGR02407       266 -SGYGLPLALTLIKPE  280 (412)
T ss_pred             -cCCccceeEEEEchh
Confidence             554688999998765

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=99.36  E-value=2.1e-11  Score=108.71  Aligned_cols=232  Identities=12%  Similarity=0.109  Sum_probs=139.9

Q ss_pred             cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhC---CCceEEecchHHHH
Q 024619            9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK---ADRALCFTSGMAAL   83 (265)
Q Consensus         9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g---~~~~i~~~~g~~al   83 (265)
                      .+.++++|.++  +..+|...|.+..+..-+..+   .....+....++...++.+.+.++..   .+.+.+++||++|+
T Consensus        38 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~---~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~  114 (421)
T PRK06777         38 EGREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQ---FTHTAYQIVPYASYVTLAERINALAPIDGPAKTAFFTTGAEAV  114 (421)
T ss_pred             CCCEEEEcccCHHhhccCCCCHHHHHHHHHHHhh---cccccccccCChHHHHHHHHHHHhCCCCCCceEEEeCCcHHHH
Confidence            45678888632  345888888777665433222   11122222244667788888888764   35688899999998


Q ss_pred             HHHHHh---cCCCCEEEEcCCCCCChHHHHHhhcCC-----CCe-----EEEeecCC----------CHHHHHhhcC---
Q 024619           84 AAVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTPK-----TGV-----VVKRVNTC----------DLDEVASAIG---  137 (265)
Q Consensus        84 ~~~~~~---~~~g~~viv~~~~~~~~~~~~~~~~~~-----~g~-----~~~~~~~~----------d~~~l~~~~~---  137 (265)
                      ...+.+   .....+|+....+|++.......+...     .+.     .+..++.+          +++.+++.+.   
T Consensus       115 e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~  194 (421)
T PRK06777        115 ENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVEEALSSVERLFKADI  194 (421)
T ss_pred             HHHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccCcCHHHHHHHHHHHHHhcc
Confidence            633332   233467888888888876443221110     000     01122211          2455666553   


Q ss_pred             --CCceEEEEecCCCCcccc-cc---HHHHHHHHHHcCCEEEEeCCcCC-CCCcC-----CCCCCccEEEeccccccccC
Q 024619          138 --PWTKLVWVESPTNPRQQI-CD---IRKIAEMAHAHGALLLVDNSIMS-PVLSR-----PLELGADIVMHSATKFIAGH  205 (265)
Q Consensus       138 --~~~~~i~~~~~~np~G~~-~~---l~~i~~~a~~~~~~li~D~~~~~-~~~~~-----~~~~~~di~~~s~sK~~~g~  205 (265)
                        +++++|+++...+..|.. .+   +++|.++|++||+++|+||+|.. +..+.     ......|++  +++|.++  
T Consensus       195 ~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~pDiv--~~sK~l~--  270 (421)
T PRK06777        195 APDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDVKPDLI--TMAKSLG--  270 (421)
T ss_pred             CCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCchhhhhhcCCCCCEE--eeehhhc--
Confidence              468899999998888864 44   89999999999999999999862 22221     112246765  6899994  


Q ss_pred             CCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619          206 SDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       206 ~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      +|+++|+++.+++.+ +.+...........++..+...+..|+
T Consensus       271 ~G~pigav~~~~~i~-~~~~~~~~~~T~~~~p~~~aaa~a~L~  312 (421)
T PRK06777        271 GGMPISAVVGRAEVM-DAPAPGGLGGTYAGNPLAVAAALAVLD  312 (421)
T ss_pred             CCCceEEEEEcHHHH-hccCCCCCCCCCCcCHHHHHHHHHHHH
Confidence            568999998876433 322222222333445665555444443

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=99.35  E-value=6.2e-12  Score=109.74  Aligned_cols=155  Identities=16%  Similarity=0.137  Sum_probs=113.6

Q ss_pred             hhHHHHHHHHHhHhCC-C--ceEEec-chHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC--
Q 024619           55 PTRDALESLLAKLDKA-D--RALCFT-SGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--  127 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~-~--~~i~~~-~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--  127 (265)
                      ...+++++.++++++. +  ++++++ +|+.++. ++..++.+|+++++.....  +-..|...+++.|.. ..+..+  
T Consensus        48 ~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~nl~~~g~~~l~i~~G~--fg~r~~~~a~~~g~~-~~~~~~~~  124 (360)
T PRK05355         48 AVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPMNLLGGGKKADYVDTGS--WSKKAIKEAKKYGEV-NVAASSED  124 (360)
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCH--HHHHHHHHHHHhCCc-eEEecccc
Confidence            3588999999999996 3  355554 4457886 7788999998877654433  233345777888865 333221  


Q ss_pred             ----CHHHHHh-hcCCCceEEEEecCCCCccccc-cHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccc
Q 024619          128 ----DLDEVAS-AIGPWTKLVWVESPTNPRQQIC-DIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKF  201 (265)
Q Consensus       128 ----d~~~l~~-~~~~~~~~i~~~~~~np~G~~~-~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~  201 (265)
                          +..++++ ++++++++|.+++..+.||.+. |+++|      +|+++++|.+++.|..+...+ +.|++++|.+|+
T Consensus       125 ~g~~~~~~~~~~~l~~~~~~V~~th~eTstGv~~~~i~~i------~g~l~vVDavss~g~~~idv~-~~d~~~~ssqK~  197 (360)
T PRK05355        125 DGFTYIPPLDEWQLSDDAAYVHYTSNETIDGTEFHELPDT------GDVPLVADMSSDILSRPIDVS-KFGLIYAGAQKN  197 (360)
T ss_pred             cCCCCCCChhhccCCCCCCEEEEccCCCcceEecCccccc------CCCcEEEEcCccccCccCCHH-HccEEEEecccc
Confidence                2233434 6777899999999999999998 77766      899999999999998864433 246999999999


Q ss_pred             cccCCCceeeEEEeechhHHH
Q 024619          202 IAGHSDVMAGVLAVKGERLAK  222 (265)
Q Consensus       202 ~~g~~g~~~G~v~~~~~~~~~  222 (265)
                      + ||+|+  |+++.+++.+..
T Consensus       198 l-gP~Gl--g~l~~s~~~l~~  215 (360)
T PRK05355        198 I-GPAGL--TIVIVREDLLGR  215 (360)
T ss_pred             c-cCCce--EEEEECHHHHhh
Confidence            9 69995  999888876533

>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]

Probab=99.33  E-value=5e-12  Score=106.57  Aligned_cols=165  Identities=21%  Similarity=0.276  Sum_probs=119.5

Q ss_pred             ccCCC-CChh-HHHHHHHHHhHhCCC---ceEEecchH-HHHHHHHHh-c-CCCCEEEEcCCCCCChHHHHHhhcCCCCe
Q 024619           48 DYTRS-GNPT-RDALESLLAKLDKAD---RALCFTSGM-AALAAVTHL-L-GTGEEIVAGDDLYGGTDRLLSRVTPKTGV  119 (265)
Q Consensus        48 ~y~~~-g~~~-~~~l~~~l~~~~g~~---~~i~~~~g~-~al~~~~~~-~-~~g~~viv~~~~~~~~~~~~~~~~~~~g~  119 (265)
                      .|+.+ |-+. |+.+++.+.++-|..   +.|++|+|+ .|+..++.+ + .+++-|+++-|-||-|...    ....|.
T Consensus       108 aYS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~~~~~GvliPiPQYPLYsAt----i~l~~~  183 (475)
T KOG0258|consen  108 AYSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIAGKKTGVLIPIPQYPLYSAT----ISLLGG  183 (475)
T ss_pred             ccccccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhcCCCCceEeecCCCchhHHH----HHHhCC
Confidence            47777 8875 999999999998842   567777775 888755554 3 4568899999999988633    233444


Q ss_pred             EEEeecC-------CCHHHHHhhcC-----CCceEEEEecCCCCccccc---cHHHHHHHHHHcCCEEEEeCCcCCCCCc
Q 024619          120 VVKRVNT-------CDLDEVASAIG-----PWTKLVWVESPTNPRQQIC---DIRKIAEMAHAHGALLLVDNSIMSPVLS  184 (265)
Q Consensus       120 ~~~~~~~-------~d~~~l~~~~~-----~~~~~i~~~~~~np~G~~~---~l~~i~~~a~~~~~~li~D~~~~~~~~~  184 (265)
                      ..+..-+       .|.+++++.+.     -+++++++-+|.||||.+.   .+++|+..|++++++++-||+|-.-.+.
T Consensus       184 ~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~  263 (475)
T KOG0258|consen  184 TQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEGIICFAAEEGLVLLADEVYQDNVYT  263 (475)
T ss_pred             cccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHcCeEEechHHHHhhccC
Confidence            4433322       27777777664     2578999999999999994   5899999999999999999998533322


Q ss_pred             ----------------CCCCCC-ccEEEeccccccccCCCceeeEEEee
Q 024619          185 ----------------RPLELG-ADIVMHSATKFIAGHSDVMAGVLAVK  216 (265)
Q Consensus       185 ----------------~~~~~~-~di~~~s~sK~~~g~~g~~~G~v~~~  216 (265)
                                      .+.... .-+.+.|.||.+.|-.|-|+|++=.-
T Consensus       264 ~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~  312 (475)
T KOG0258|consen  264 TGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESL  312 (475)
T ss_pred             CCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeecc
Confidence                            111111 23677889999889999999987543

>PLN02590 probable tyrosine decarboxylase

Probab=99.33  E-value=1.4e-11  Score=111.88  Aligned_cols=158  Identities=17%  Similarity=0.134  Sum_probs=113.4

Q ss_pred             hHHHHHHHHHhHhCCCc---------eEEecchHHHH-HHHHHh----cC-------CCCEEEEcCCCCCChHHHHHhhc
Q 024619           56 TRDALESLLAKLDKADR---------ALCFTSGMAAL-AAVTHL----LG-------TGEEIVAGDDLYGGTDRLLSRVT  114 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~~---------~i~~~~g~~al-~~~~~~----~~-------~g~~viv~~~~~~~~~~~~~~~~  114 (265)
                      .-+++-+++++++|.++         .+++++|++|. .++...    .+       +.-.|.+++.+|.+..    +.+
T Consensus       171 lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~Sv~----KAa  246 (539)
T PLN02590        171 LEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSSFR----KAC  246 (539)
T ss_pred             HHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHHHH----HHH
Confidence            46677889999998653         57777888765 333321    11       1123456777887765    555


Q ss_pred             CCCCe---EEEeecCC-------CHHHHHhhcCC------CceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCc
Q 024619          115 PKTGV---VVKRVNTC-------DLDEVASAIGP------WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSI  178 (265)
Q Consensus       115 ~~~g~---~~~~~~~~-------d~~~l~~~~~~------~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~  178 (265)
                      +..|+   .++.++.+       |+++|++++.+      .+-+|+.+.....+|.+.|+++|.++|++||+++++|.+|
T Consensus       247 ~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g~WlHVDaA~  326 (539)
T PLN02590        247 LIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAAY  326 (539)
T ss_pred             HHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCeEEEecch
Confidence            66665   35555543       78999988853      2556777878888999999999999999999999999999


Q ss_pred             CCCCCcCCC-------CCCccEEEeccccccccCCCceeeEEEeechh
Q 024619          179 MSPVLSRPL-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGER  219 (265)
Q Consensus       179 ~~~~~~~~~-------~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~  219 (265)
                      +......+.       -..+|-+..++|||+..|-+  +|++++++..
T Consensus       327 GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~--cg~llvr~~~  372 (539)
T PLN02590        327 AGNACICPEYRKFIDGIENADSFNMNAHKWLFANQT--CSPLWVKDRY  372 (539)
T ss_pred             hhhhhcChhhHHHhcCCccCCEEEECchhhcCcCcC--EEEEEecCHH
Confidence            876543221       12368999999999988866  7988888753

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=99.33  E-value=4.8e-11  Score=107.34  Aligned_cols=200  Identities=16%  Similarity=0.172  Sum_probs=130.4

Q ss_pred             cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHh-CCCceEEecchHHHHHH
Q 024619            9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD-KADRALCFTSGMAALAA   85 (265)
Q Consensus         9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~-g~~~~i~~~~g~~al~~   85 (265)
                      .+.++|+|.++  ...+|...|++.++..-+...   ..  .+. ..++...++.+.+.+.. +.+.+.+.+||++|...
T Consensus        97 dG~~yiD~~~g~g~~~lGh~~p~v~~av~~ql~~---~~--~~~-~~~~~~~~lAe~l~~~~p~~~~v~f~~SGsEA~e~  170 (474)
T PLN02482         97 DGNEYIDYVGSWGPAIIGHADDEVLAALAETMKK---GT--SFG-APCLLENVLAEMVIDAVPSVEMVRFVNSGTEACMG  170 (474)
T ss_pred             CCCEEEEecccccccccCCCCHHHHHHHHHHHhh---CC--CCC-CCCHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHH
Confidence            35678888543  345898888888776533322   11  121 13355677888888776 45678889999999863


Q ss_pred             HHHh---cCCCCEEEEcCCCCCChHHHHHhh----------cCCCCe------EEEeecCCCHHHHHhhcC---CCceEE
Q 024619           86 VTHL---LGTGEEIVAGDDLYGGTDRLLSRV----------TPKTGV------VVKRVNTCDLDEVASAIG---PWTKLV  143 (265)
Q Consensus        86 ~~~~---~~~g~~viv~~~~~~~~~~~~~~~----------~~~~g~------~~~~~~~~d~~~l~~~~~---~~~~~i  143 (265)
                      .+.+   ....++|+....+|++....+...          ....|.      .+..++..|++++++.+.   .++++|
T Consensus       171 AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~nd~~~l~~~l~~~~~~iAav  250 (474)
T PLN02482        171 VLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPYNDLEAVKKLFEANKGEIAAV  250 (474)
T ss_pred             HHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecCCChHHHHHHHHhCCCceEEE
Confidence            3333   333467888888898864221000          001111      234455568888887774   468899


Q ss_pred             EEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCCCCc------CCCCCCccEEEeccccccccCCCceeeEE
Q 024619          144 WVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPVLS------RPLELGADIVMHSATKFIAGHSDVMAGVL  213 (265)
Q Consensus       144 ~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~~~~~~------~~~~~~~di~~~s~sK~~~g~~g~~~G~v  213 (265)
                      +++......|.+.|    +++|.++|++||+++|+||++. |...      ......+|++  +++|.+++  |+..|.+
T Consensus       251 I~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~t-GfR~g~~ga~~~~gv~PDi~--t~gK~lgg--G~Pigav  325 (474)
T PLN02482        251 ILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMT-GFRIAYGGAQEYFGITPDLT--TLGKVIGG--GLPVGAY  325 (474)
T ss_pred             EECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CeecCcchHhHHhCCCCCEE--EecchhhC--CCceEEE
Confidence            99999888898865    6799999999999999999984 3321      1123357875  67999953  4667877


Q ss_pred             Eeechh
Q 024619          214 AVKGER  219 (265)
Q Consensus       214 ~~~~~~  219 (265)
                      .++++.
T Consensus       326 ~g~~ei  331 (474)
T PLN02482        326 GGRREI  331 (474)
T ss_pred             EEcHHH
Confidence            776543

>PRK12403 putative aminotransferase; Provisional

Probab=99.32  E-value=7.8e-11  Score=106.00  Aligned_cols=235  Identities=14%  Similarity=0.074  Sum_probs=133.8

Q ss_pred             cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhC--CCceEEecchHHHHH
Q 024619            9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK--ADRALCFTSGMAALA   84 (265)
Q Consensus         9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g--~~~~i~~~~g~~al~   84 (265)
                      .+.++|+|.+  ++..+|...|.+..+..-+.... .... .+....++...+++++++++++  .+.+++++||++|+.
T Consensus        52 dG~~ylD~~~g~~~~~lGh~hp~v~~A~~~q~~~~-~~~~-~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e  129 (460)
T PRK12403         52 DGKRYLDGMSGLWCTNLGYGRKDLAAAAARQMEQL-PYYN-MFFHTTHPAVIELSELLFSLLPGHYSHAIYTNSGSEANE  129 (460)
T ss_pred             CCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhC-CCee-cccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHH
Confidence            3467888753  23459997766666654332221 1000 0101134668899999999986  357889999999986


Q ss_pred             -HHHHhc-------CCCCE-EEEcCCCCCChHHHHHhhcCCC-----C---eEEEeecCC-------C----------HH
Q 024619           85 -AVTHLL-------GTGEE-IVAGDDLYGGTDRLLSRVTPKT-----G---VVVKRVNTC-------D----------LD  130 (265)
Q Consensus        85 -~~~~~~-------~~g~~-viv~~~~~~~~~~~~~~~~~~~-----g---~~~~~~~~~-------d----------~~  130 (265)
                       ++....       ++++. |+....+|++.....-......     +   -.+..++.+       +          .+
T Consensus       130 ~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  209 (460)
T PRK12403        130 VLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGRRAAL  209 (460)
T ss_pred             HHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHH
Confidence             443321       23333 4455557776643211111100     0   012222211       0          23


Q ss_pred             HHHhhc----CCCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCc-----CCCCCCccEEEe
Q 024619          131 EVASAI----GPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADIVMH  196 (265)
Q Consensus       131 ~l~~~~----~~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~-----~~~~~~~di~~~  196 (265)
                      ++++.+    .+++++|+++......|.+.+    +++|.++|++||+++|+||++. .|..+     ......+||++ 
T Consensus       210 ~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~e~~gv~PDiv~-  288 (460)
T PRK12403        210 QLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWFAHEHFGFEPDTLS-  288 (460)
T ss_pred             HHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhhhhhcCCCCCeEE-
Confidence            444444    246789999999888888876    9999999999999999999984 33333     12234578886 


Q ss_pred             ccccccccCCCceeeEEEeechhHHHHHHH----HHHhccCCCChhHHHHHHhccCc
Q 024619          197 SATKFIAGHSDVMAGVLAVKGERLAKELYF----LQNAEGSGLAPFDCWICLRGVKT  249 (265)
Q Consensus       197 s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~  249 (265)
                       ++|.+++. -+..|.++++++ +.+.+..    +....+...+|..++..++.|+.
T Consensus       289 -~gK~lggG-~~Piga~v~~~~-i~~~~~~~~~~~~~~~T~~gnPl~~Aaala~L~~  342 (460)
T PRK12403        289 -IAKGLTSG-YVPMGGLVLSKR-IAEALVEQGGVFAHGLTYSGHPVAAAVAIANLKA  342 (460)
T ss_pred             -Eccccccc-ccceEEEEECHH-HHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHH
Confidence             79999642 123566666654 4343321    11122334556666665555543

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=99.31  E-value=5e-11  Score=106.42  Aligned_cols=203  Identities=18%  Similarity=0.135  Sum_probs=127.5

Q ss_pred             cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CChhHHHHHHHHHhHh----CCC-ceEEe-cch
Q 024619            9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLD----KAD-RALCF-TSG   79 (265)
Q Consensus         9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~----g~~-~~i~~-~~g   79 (265)
                      .+.++++|.++  +..+|...|.+..+..-+....    .+..... .++...++.+++.+..    +.+ .+.++ +||
T Consensus        37 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~----~~~~~~~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sG  112 (425)
T PRK09264         37 DGKEYIDFFAGAGALNYGHNNPVLKQALIDYLQRD----GITHGLDMHTTAKREFLETFEETILKPRGLDYKVQFTGPTG  112 (425)
T ss_pred             CCCEeeecccchhhccCCCCCHHHHHHHHHHHHhc----ccccccccCcHHHHHHHHHHHHhhcCCcCCCceEEEeCCCH
Confidence            45788998543  3458998888877764322211    1111111 3456778888888764    223 24454 699


Q ss_pred             HHHHHHHHHh---cCCCCEEEEcCCCCCChHHHHHhhcC------CCCe---EEEeecC--------CCHHHHHhhcC--
Q 024619           80 MAALAAVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTP------KTGV---VVKRVNT--------CDLDEVASAIG--  137 (265)
Q Consensus        80 ~~al~~~~~~---~~~g~~viv~~~~~~~~~~~~~~~~~------~~g~---~~~~~~~--------~d~~~l~~~~~--  137 (265)
                      ++|+...+.+   .....+|+....+|++..........      ..+.   .+..+|.        .|++++++.+.  
T Consensus       113 seA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~  192 (425)
T PRK09264        113 TNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLEDS  192 (425)
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHHHHhc
Confidence            9998633333   23346788888888887533212111      1111   2333443        25667777663  


Q ss_pred             ----CCceEEEEecCCCCccccc----cHHHHHHHHHHcCCEEEEeCCcC-CCCCc-----CCCCCCccEEEeccccccc
Q 024619          138 ----PWTKLVWVESPTNPRQQIC----DIRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADIVMHSATKFIA  203 (265)
Q Consensus       138 ----~~~~~i~~~~~~np~G~~~----~l~~i~~~a~~~~~~li~D~~~~-~~~~~-----~~~~~~~di~~~s~sK~~~  203 (265)
                          +++.+|+++......|.+.    .+++|.++|++||+++|+||+|. .|..+     .......|++  +++|.+ 
T Consensus       193 ~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~~~~~v~PDi~--t~~K~l-  269 (425)
T PRK09264        193 SSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGITPDIV--TLSKSI-  269 (425)
T ss_pred             cCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHHHhhcCCCCCEE--Eecccc-
Confidence                2578999999988778653    48999999999999999999985 22221     1223457876  568999 


Q ss_pred             cCCCceeeEEEeech
Q 024619          204 GHSDVMAGVLAVKGE  218 (265)
Q Consensus       204 g~~g~~~G~v~~~~~  218 (265)
                      ++.|+++|+++.+++
T Consensus       270 ~~~G~pigav~~~~~  284 (425)
T PRK09264        270 SGYGLPMALVLIKPE  284 (425)
T ss_pred             CCCccceEEEEEchh
Confidence            555788999988765

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=99.31  E-value=4.6e-11  Score=105.07  Aligned_cols=232  Identities=15%  Similarity=0.109  Sum_probs=143.1

Q ss_pred             CcceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCC---CceEEecchHHH
Q 024619            8 GVSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA---DRALCFTSGMAA   82 (265)
Q Consensus         8 ~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~---~~~i~~~~g~~a   82 (265)
                      -.+.++|+|.+  ..-.+|...|.++.+..-+... .....+.|..+  +...++.++|.+....   +.+.+.+||++|
T Consensus        53 vdG~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q~~~-~~h~~~~~~~~--e~~v~~ae~L~~~~p~~~~~~~~f~~sGaeA  129 (447)
T COG0160          53 VDGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAK-LNHTHTRDLYY--EPYVELAEKLTALAPGSGLKKVFFGNSGAEA  129 (447)
T ss_pred             CCCCEEEEcccCcchhccCCCCHHHHHHHHHHHHH-hhcccCCcccc--hhHHHHHHHHHHhCCcccCCeEEecCCcHHH
Confidence            34578899974  2334888887777776533322 11112222222  4567777777776543   468899999999


Q ss_pred             HHHHHHh---cCCCCEEEEcCCCCCChHHHHHhhcCCC----------CeEEEeecCC-----------------CHHHH
Q 024619           83 LAAVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTPKT----------GVVVKRVNTC-----------------DLDEV  132 (265)
Q Consensus        83 l~~~~~~---~~~g~~viv~~~~~~~~~~~~~~~~~~~----------g~~~~~~~~~-----------------d~~~l  132 (265)
                      +.....+   ...+..|+....+|++.....-.+....          ...+..+|.+                 ..+.+
T Consensus       130 ~E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~  209 (447)
T COG0160         130 VEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYI  209 (447)
T ss_pred             HHHHHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHHHHHH
Confidence            9644333   3345678888888877654421221111          1113344422                 12233


Q ss_pred             HhhcC------CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCc-----CCCCCCccEEEe
Q 024619          133 ASAIG------PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADIVMH  196 (265)
Q Consensus       133 ~~~~~------~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~-----~~~~~~~di~~~  196 (265)
                      +..+.      .++++++++..+.-.|.+.+    ++++.++|++||+++|.||++. .|..+     ......+||++ 
T Consensus       210 e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~~fa~E~~gv~PDivt-  288 (447)
T COG0160         210 ERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVT-  288 (447)
T ss_pred             HHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccccchhhhhcCCCCCEEE-
Confidence            33221      36889999999998998854    7999999999999999999985 23332     22233589985 


Q ss_pred             ccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619          197 SATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       197 s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                       ++|.+++  |+..|.++.+.+...  +..........-+|..++..+..|+
T Consensus       289 -~aK~ig~--G~Pl~avv~r~ei~~--~~~g~~~~Tf~GNpva~Aaa~AvL~  335 (447)
T COG0160         289 -LAKSLGG--GLPLSAVVGRAEIMD--WPPGGHGGTFGGNPVACAAALAVLD  335 (447)
T ss_pred             -ecccccC--CCceeEEeccHHhcc--cCCcccCCCCCcCHHHHHHHHHHHH
Confidence             6999965  788999988876543  3343344445555666655544444

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=99.31  E-value=5.8e-11  Score=106.77  Aligned_cols=226  Identities=14%  Similarity=0.125  Sum_probs=131.9

Q ss_pred             cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCC---CceEEecchHHHH
Q 024619            9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA---DRALCFTSGMAAL   83 (265)
Q Consensus         9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~---~~~i~~~~g~~al   83 (265)
                      .+.++|+|.++  +-.+|...|.+..+..-+....   .........++...++.+.+.++...   +.+.+++||++|.
T Consensus        52 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~---~~~~~~~~~~~~~~~la~~L~~~~p~~~~~~v~f~~sGseA~  128 (451)
T PRK06918         52 DGNQYIDFAGAIGTINVGHSHPKVKEALHKQVDQY---IHTGFNVMMYEPYIELAEKLAALAPGSFDKKVLFLNSGAEAV  128 (451)
T ss_pred             CCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHHhc---cCccccccccHHHHHHHHHHHHhCCCCCCCEEEEcCCcHHHH
Confidence            45678888543  3458888877777654332221   11111111346678888999888742   3578888999998


Q ss_pred             HHHHHh---cCCCCEEEEcCCCCCChHHHHHhhcCC-------CC---eEEEeecCCC-----------------HHHHH
Q 024619           84 AAVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTPK-------TG---VVVKRVNTCD-----------------LDEVA  133 (265)
Q Consensus        84 ~~~~~~---~~~g~~viv~~~~~~~~~~~~~~~~~~-------~g---~~~~~~~~~d-----------------~~~l~  133 (265)
                      .+.+.+   .....+|+....+|++...........       ++   ..+..++.++                 .+.++
T Consensus       129 e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (451)
T PRK06918        129 ENAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFK  208 (451)
T ss_pred             HHHHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCccccccccCchHHHHHHHHHHHH
Confidence            633332   233467888888888876432221110       00   0122222110                 11233


Q ss_pred             hhc----C-CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCC-CCCcCC---C--CCCccEEEecc
Q 024619          134 SAI----G-PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLSRP---L--ELGADIVMHSA  198 (265)
Q Consensus       134 ~~~----~-~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~~-~~~~~~---~--~~~~di~~~s~  198 (265)
                      +.+    . +++.+|+++..+.-.|.+.+    +++|.++|++||+++|+||+|.. +..+..   .  ....|++  |+
T Consensus       209 ~~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~~a~~~~~v~pDi~--t~  286 (451)
T PRK06918        209 NFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIEHFDVVPDLI--TV  286 (451)
T ss_pred             HHHHhhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCceehhHhcCCCCCEE--ee
Confidence            222    2 46888999887665576542    89999999999999999999852 222211   1  2236744  79


Q ss_pred             ccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHH
Q 024619          199 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI  242 (265)
Q Consensus       199 sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (265)
                      +|.++  +|++.|+++.+++.+ +.+...........++..+..
T Consensus       287 sK~l~--~G~pig~v~~~~~i~-~~~~~~~~~~T~~g~~l~~aa  327 (451)
T PRK06918        287 SKSLG--AGVPISGVIGRKEIM-DESAPGELGGTYAGSPLGCAA  327 (451)
T ss_pred             ehhhc--CCCccEEEEEcHHHH-hccCCCCcCcCCCcCHHHHHH
Confidence            99994  469999999876543 322222222334445555444

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.31  E-value=9.8e-11  Score=104.60  Aligned_cols=229  Identities=16%  Similarity=0.167  Sum_probs=144.0

Q ss_pred             cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHh-CCCceEEecchHHHHHH
Q 024619            9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD-KADRALCFTSGMAALAA   85 (265)
Q Consensus         9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~-g~~~~i~~~~g~~al~~   85 (265)
                      .+.++|+|.+  ++..+|...|.+..+..-+...    ... + ...++...++.+.+.+.. +.+.+.+++||++|+..
T Consensus        51 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~----~~~-~-~~~~~~~~~la~~l~~~~p~~~~v~f~~sGseA~e~  124 (428)
T PRK12389         51 DGNKYIDYLAAYGPIITGHAHPHITKAITEAAEN----GVL-Y-GTPTELEIEFAKMLKEAIPSLEKVRFVNSGTEAVMT  124 (428)
T ss_pred             CCCEEEEccccccccccCCCCHHHHHHHHHHHHh----CCc-c-CCCCHHHHHHHHHHHHhCCCCcEEEEeCCHHHHHHH
Confidence            3567888853  3445888888887776433221    111 1 124466778888888776 34568888999999864


Q ss_pred             HHHh---cCCCCEEEEcCCCCCChHHHHHhhcCC----------CC------eEEEeecCCCHHHHHhhcC---CCceEE
Q 024619           86 VTHL---LGTGEEIVAGDDLYGGTDRLLSRVTPK----------TG------VVVKRVNTCDLDEVASAIG---PWTKLV  143 (265)
Q Consensus        86 ~~~~---~~~g~~viv~~~~~~~~~~~~~~~~~~----------~g------~~~~~~~~~d~~~l~~~~~---~~~~~i  143 (265)
                      .+.+   .....+|+....+|++...........          .+      ..+..++..|++.+++.+.   .++.+|
T Consensus       125 AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~vaav  204 (428)
T PRK12389        125 TIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFNDIEALKEALDKWGDEVAAV  204 (428)
T ss_pred             HHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCCCCHHHHHHHHHhcCCcEEEE
Confidence            3333   233467888888888865332111110          01      1334455668888887774   468899


Q ss_pred             EEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCCCCc-----CCCCCCccEEEeccccccccCCCceeeEEE
Q 024619          144 WVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVLA  214 (265)
Q Consensus       144 ~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~~~~~~di~~~s~sK~~~g~~g~~~G~v~  214 (265)
                      +++...+..|.+.+    +++|.++|+++|+++|+||++...-..     ......+|++  +++|.+++  |+..|.++
T Consensus       205 i~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~Rt~~~~a~~~~gv~PDiv--t~gK~lgg--G~Pi~av~  280 (428)
T PRK12389        205 LVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAFRFMYGGAQDLLGVEPDLT--ALGKIIGG--GLPIGAYG  280 (428)
T ss_pred             EEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccccccccCcchhhHHhCCCCCee--eechhhcC--CCceeEEe
Confidence            99999888898876    899999999999999999998632111     1123457876  67999954  46678777


Q ss_pred             eechhHHHHHHH---HHHhccCCCChhHHHHHHhccC
Q 024619          215 VKGERLAKELYF---LQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       215 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      ++++ +.+.+..   .....+...+|..++..+..|+
T Consensus       281 ~~~~-i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~  316 (428)
T PRK12389        281 GRKD-IMEQVAPLGPAYQAGTMAGNPASMAAGIACLE  316 (428)
T ss_pred             EHHH-HHhhhccCCCcccccCCccCHHHHHHHHHHHH
Confidence            7664 4343321   1122233455666655444444

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=99.30  E-value=1.6e-11  Score=106.41  Aligned_cols=232  Identities=19%  Similarity=0.130  Sum_probs=142.0

Q ss_pred             CcceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CChhHHHHHHHHHhHh--CCCceEEecchHHH
Q 024619            8 GVSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLD--KADRALCFTSGMAA   82 (265)
Q Consensus         8 ~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~--g~~~~i~~~~g~~a   82 (265)
                      ..+.++++|.+  ++..+|...|++..+.......    ..+..... ..+...++.+++.+..  +.+.+.+.+||++|
T Consensus        13 ~dG~~~lD~~~~~~~~~lGh~~p~i~~ai~~~~~~----~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGseA   88 (339)
T PF00202_consen   13 VDGREYLDFMSGYGSVNLGHNHPEIAEAIAEQANK----LNYVSFSGFTHPEAAELAEKLAELFPGGLDRVFFANSGSEA   88 (339)
T ss_dssp             TTSEEEEESSHHHHTTTT-BT-HHHHHHHHHHHHH----CSSCSTTTSEEHHHHHHHHHHHHHSSTTEEEEEEESSHHHH
T ss_pred             CCCCEEEECCCCccceecCCCccccchhHHHHhhh----cccccccceeccchhhhhhhhhhccccccceeeeccCchHH
Confidence            34578999953  4667999888877776533221    12222122 3467899999999998  44578888999999


Q ss_pred             HHHHHHh-c--------CCCCEEEEcCCCCCChHHHHHhh---------cCCCCeEEEeecCCCHHH----------HH-
Q 024619           83 LAAVTHL-L--------GTGEEIVAGDDLYGGTDRLLSRV---------TPKTGVVVKRVNTCDLDE----------VA-  133 (265)
Q Consensus        83 l~~~~~~-~--------~~g~~viv~~~~~~~~~~~~~~~---------~~~~g~~~~~~~~~d~~~----------l~-  133 (265)
                      +...+.+ .        ....+|+....+|++.......+         .......+..+|.++...          ++ 
T Consensus        89 ve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  168 (339)
T PF00202_consen   89 VEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPAADEEEQACLNALEE  168 (339)
T ss_dssp             HHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCCccchhhhHHHHHHHHHH
Confidence            8633332 2        13468888888888654321111         112222346667666555          22 


Q ss_pred             ---hhcCCCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CCCCCccEEEecccc
Q 024619          134 ---SAIGPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATK  200 (265)
Q Consensus       134 ---~~~~~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~~~~~di~~~s~sK  200 (265)
                         +.-.+++.+|+++......|.+.+    +++|.++|++||+++|.||++. .|-.+.     .....+|+++.  +|
T Consensus       169 ~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv~PDiv~~--gK  246 (339)
T PF00202_consen  169 LIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFASEHYGVDPDIVTF--GK  246 (339)
T ss_dssp             HHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTSSSSEEEE--EG
T ss_pred             HHHhhcCCcEEEEEEeccccccCccccccchhhehcccccccccceecccccccccccCCccceecccccCccccc--cc
Confidence               222467889999998877776642    7999999999999999999985 333332     23446899876  69


Q ss_pred             ccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619          201 FIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       201 ~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      .+++  |+..+.++.+++.. +.........+..-++..+...++.|+
T Consensus       247 ~l~g--G~p~sav~~~~~i~-~~~~~~~~~~T~~g~p~~~aaa~~~l~  291 (339)
T PF00202_consen  247 GLGG--GLPISAVLGSEEIM-EAFQPGSHGSTFGGNPLSCAAALATLE  291 (339)
T ss_dssp             GGGT--TSSEEEEEEEHHHH-TTSCTTSSTCTTTT-HHHHHHHHHHHH
T ss_pred             chhh--hhhcccccccchhh-ccccccccccccccchHhhhhhhhHHH
Confidence            9965  37788888877543 322222222333444565555444444

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=99.30  E-value=8.2e-11  Score=105.44  Aligned_cols=204  Identities=17%  Similarity=0.199  Sum_probs=124.6

Q ss_pred             cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccC-CCCChhHHHHHHHHHhHhC--CCceEEecchHHHH
Q 024619            9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYT-RSGNPTRDALESLLAKLDK--ADRALCFTSGMAAL   83 (265)
Q Consensus         9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~-~~g~~~~~~l~~~l~~~~g--~~~~i~~~~g~~al   83 (265)
                      .+.++++|.++  +..+|...|.+..+..-+....    .+... ...++...++.+++.++..  .+.+.+.+||++|+
T Consensus        47 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l----~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGseAv  122 (445)
T PRK09221         47 DGRKILDGTAGLWCCNAGHGRPEIVEAVARQAATL----DYAPAFQMGHPLAFELAERLAELAPGGLDHVFFTNSGSESV  122 (445)
T ss_pred             CCCEEEEccccHhhccCCCCCHHHHHHHHHHHHhc----cCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHH
Confidence            35678888532  3558888888777654332221    11111 1245667788899988873  35688889999998


Q ss_pred             HHHHHh---c----C-C-CCEEEEcCCCCCChHHHHHhhcCC------CC---eEEEeecCCC-----------------
Q 024619           84 AAVTHL---L----G-T-GEEIVAGDDLYGGTDRLLSRVTPK------TG---VVVKRVNTCD-----------------  128 (265)
Q Consensus        84 ~~~~~~---~----~-~-g~~viv~~~~~~~~~~~~~~~~~~------~g---~~~~~~~~~d-----------------  128 (265)
                      ...+.+   .    . + ..+|+....+|++...........      ++   ..+..++.+.                 
T Consensus       123 e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (445)
T PRK09221        123 DTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQPEHGAE  202 (445)
T ss_pred             HHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCccccccccCCChHHHHHH
Confidence            633322   1    1 1 357888888888764321111100      00   0112222110                 


Q ss_pred             -HHHHHhhcC----CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCc-CCCCCcC-----CCCCCccE
Q 024619          129 -LDEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSI-MSPVLSR-----PLELGADI  193 (265)
Q Consensus       129 -~~~l~~~~~----~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~-~~~~~~~-----~~~~~~di  193 (265)
                       .+++++.+.    +++.+|+++......|.+.+    +++|.++|++||+++|+||++ +.|..+.     .....+|+
T Consensus       203 ~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~~~~~~gv~PDi  282 (445)
T PRK09221        203 LADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAFAAERFGVTPDI  282 (445)
T ss_pred             HHHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCchhhHHHhcCCCCCE
Confidence             245555553    46889999999988899877    999999999999999999998 4443332     12334687


Q ss_pred             EEeccccccccCCCceeeEEEeechh
Q 024619          194 VMHSATKFIAGHSDVMAGVLAVKGER  219 (265)
Q Consensus       194 ~~~s~sK~~~g~~g~~~G~v~~~~~~  219 (265)
                      +  +++|.+++ +.+..|.++.+++.
T Consensus       283 ~--~~gK~l~g-G~~Pi~av~~~~~i  305 (445)
T PRK09221        283 I--TFAKGLTN-GAIPMGAVIASDEI  305 (445)
T ss_pred             E--Eecccccc-CcccceeeEEcHHH
Confidence            6  57998853 22335777666543

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=99.30  E-value=6.6e-11  Score=105.46  Aligned_cols=228  Identities=12%  Similarity=0.046  Sum_probs=133.6

Q ss_pred             cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCC---CceEEecchHHHH
Q 024619            9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA---DRALCFTSGMAAL   83 (265)
Q Consensus         9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~---~~~i~~~~g~~al   83 (265)
                      .+.++++|.++  +-.+|...|.+..+..-+....   .........++...++.+++.+....   +.+.+.+||++|+
T Consensus        38 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l---~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~SGseA~  114 (425)
T PRK07495         38 EGRRYIDFAAGIAVVNTGHRHPRVIAAVKAQLDRF---THTCHQVVPYENYVRLAERLNALVPGDFAKKTIFVTTGAEAV  114 (425)
T ss_pred             CCCEEEEccccHHhhccCCCCHHHHHHHHHHHhhc---cCcccCccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHH
Confidence            45678888632  3458998888877754332221   11111122345677888889888743   3578888999998


Q ss_pred             HHHHHh---cCCCCEEEEcCCCCCChHHHHHhhc-----CCCC-----eEEEeecCCC----------HHHHHhhcC---
Q 024619           84 AAVTHL---LGTGEEIVAGDDLYGGTDRLLSRVT-----PKTG-----VVVKRVNTCD----------LDEVASAIG---  137 (265)
Q Consensus        84 ~~~~~~---~~~g~~viv~~~~~~~~~~~~~~~~-----~~~g-----~~~~~~~~~d----------~~~l~~~~~---  137 (265)
                      ...+.+   .....+|+....+|++.......+.     ...+     ..+..++.++          .+++++.+.   
T Consensus       115 e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~  194 (425)
T PRK07495        115 ENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVELHGVSVEQSLAALDKLFKADV  194 (425)
T ss_pred             HHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCcccccccHHHHHHHHHHHHHhcc
Confidence            633332   2335678888888888753321111     0111     1223333322          344455542   


Q ss_pred             --CCceEEEEecCCCCccccc-c---HHHHHHHHHHcCCEEEEeCCcC-CCCCcCC---CCCCccEEEeccccccccCCC
Q 024619          138 --PWTKLVWVESPTNPRQQIC-D---IRKIAEMAHAHGALLLVDNSIM-SPVLSRP---LELGADIVMHSATKFIAGHSD  207 (265)
Q Consensus       138 --~~~~~i~~~~~~np~G~~~-~---l~~i~~~a~~~~~~li~D~~~~-~~~~~~~---~~~~~di~~~s~sK~~~g~~g  207 (265)
                        .++++|+++....-+|.+. |   +++|.++|++||+++|+||+|. .+..+..   ...+...-+.+++|.++  +|
T Consensus       195 ~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~a~~~~gv~pDi~tlsK~l~--~G  272 (425)
T PRK07495        195 DPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEHHEVAADLTTMAKGLA--GG  272 (425)
T ss_pred             CCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCceeecccCCCCCEEeehhhhc--CC
Confidence              4688999988776677553 2   7999999999999999999985 2222211   11222223457899994  35


Q ss_pred             ceeeEEEeechhHHHHHHHHHHhccCCCChhHHHH
Q 024619          208 VMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI  242 (265)
Q Consensus       208 ~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (265)
                      +++|+++.+++.. +.+...........++..++.
T Consensus       273 ~pigav~~~~~i~-~~~~~~~~~~T~~~~pl~~aa  306 (425)
T PRK07495        273 FPLAAVTGRAEIM-DAPGPGGLGGTYGGNPLGIAA  306 (425)
T ss_pred             ccceEEEEcHHHH-hccCCCCcCCCCCCCHHHHHH
Confidence            8899998876543 322221222334445555553

>PRK06105 aminotransferase; Provisional

Probab=99.29  E-value=1.1e-10  Score=104.96  Aligned_cols=233  Identities=14%  Similarity=0.100  Sum_probs=139.8

Q ss_pred             cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCC--ccCCCCChhHHHHHHHHHhHhCC--CceEEecchHHH
Q 024619            9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPY--DYTRSGNPTRDALESLLAKLDKA--DRALCFTSGMAA   82 (265)
Q Consensus         9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~y~~~g~~~~~~l~~~l~~~~g~--~~~i~~~~g~~a   82 (265)
                      .+.++++|.+  ++..+|...|.+.++..-+...    ..+  .++...++...+++++|.+++..  +.+.+.+||++|
T Consensus        46 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~----~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA  121 (460)
T PRK06105         46 AGKRYIEGMAGLWSVALGFSEQRLVEAAARQMKK----LPFYHTFSHKSHGPVIDLAEKLVAMAPVPMSKVFFTNSGSEA  121 (460)
T ss_pred             CCCEEEEcchhHHhccCCCCCHHHHHHHHHHHHh----CCCeecccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHH
Confidence            4578999864  3466999988877776533221    111  11122345678899999988743  457788899999


Q ss_pred             HHHHHHhc-------C-C-CCEEEEcCCCCCChHHHHHhhcCC------CCe---EEEeecCCC----------------
Q 024619           83 LAAVTHLL-------G-T-GEEIVAGDDLYGGTDRLLSRVTPK------TGV---VVKRVNTCD----------------  128 (265)
Q Consensus        83 l~~~~~~~-------~-~-g~~viv~~~~~~~~~~~~~~~~~~------~g~---~~~~~~~~d----------------  128 (265)
                      +.+.+.+.       . + ..+|+....+|++.......+...      ++.   .+..++.++                
T Consensus       122 ve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  201 (460)
T PRK06105        122 NDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFAT  201 (460)
T ss_pred             HHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCcccccccCCCChHHHHH
Confidence            86433331       1 2 357888788887775321111110      110   112222211                


Q ss_pred             --HHHHHhhcC----CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCc-CCCCCcC-----CCCCCcc
Q 024619          129 --LDEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSI-MSPVLSR-----PLELGAD  192 (265)
Q Consensus       129 --~~~l~~~~~----~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~-~~~~~~~-----~~~~~~d  192 (265)
                        .+++++.+.    .++.+|+++..+...|.+.+    ++++.++|++||+++|+||++ +.|..+.     .....+|
T Consensus       202 ~~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v~PD  281 (460)
T PRK06105        202 RLANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNMFGCETFGIKPD  281 (460)
T ss_pred             HHHHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCchhhhHHhcCCCCC
Confidence              244555552    46889999998887888765    899999999999999999998 5555431     2234578


Q ss_pred             EEEeccccccccCCCceeeEEEeechhHHHHHHHH-------HHhccCCCChhHHHHHHhccCc
Q 024619          193 IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-------QNAEGSGLAPFDCWICLRGVKT  249 (265)
Q Consensus       193 i~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~  249 (265)
                      ++  +++|.+++ +.+.+|.++.+++ +.+.+...       ....+...+|..+...+..|+.
T Consensus       282 i~--~~gK~lgg-G~~P~~av~~~~~-i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~  341 (460)
T PRK06105        282 IL--VMSKQLSS-SYQPLSAVLMNEK-VYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAI  341 (460)
T ss_pred             ee--eeeccccc-CcccceEEEEcHH-HHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHH
Confidence            77  56999964 2234688877764 33333211       1123344556666554444443

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=99.29  E-value=9.5e-11  Score=105.37  Aligned_cols=231  Identities=17%  Similarity=0.168  Sum_probs=134.6

Q ss_pred             cceeEeeccCCCCC--CCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCC--CceEEecchHHHHH
Q 024619            9 VSTLLMNFSNEFDP--YGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA--DRALCFTSGMAALA   84 (265)
Q Consensus         9 ~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~--~~~i~~~~g~~al~   84 (265)
                      .+.++|+|. ++.+  +|...|.+..+..-+...    ..+......++...+++++++++.+.  +.+.+.+||++|+.
T Consensus        70 dG~~ylD~~-g~~~~~lGh~~p~v~~Ai~~ql~~----~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve  144 (459)
T PRK06082         70 DGKKYMDFH-GNNVHQLGYGHPHVIEKVKEQMAK----LPFSPRRFTNETAIECAEKLTEIAGGELNRVLFAPGGTSAIG  144 (459)
T ss_pred             CCCEEEEcc-cHhhcccCCCCHHHHHHHHHHHHh----CCCccCccCCHHHHHHHHHHHHhCCCCCCEEEECCCcHHHHH
Confidence            456889997 4444  888777666665422221    11111222456788999999998853  45777788899986


Q ss_pred             HHHHhc---CCCCEEEEcCCCCCChHHHHHhhcCC------CC---eEEEeec--------CCC--------HHHHHhhc
Q 024619           85 AVTHLL---GTGEEIVAGDDLYGGTDRLLSRVTPK------TG---VVVKRVN--------TCD--------LDEVASAI  136 (265)
Q Consensus        85 ~~~~~~---~~g~~viv~~~~~~~~~~~~~~~~~~------~g---~~~~~~~--------~~d--------~~~l~~~~  136 (265)
                      +...+.   ....+|+....+|++.......+...      .+   ..+..++        ..+        ++.+++.+
T Consensus       145 ~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i  224 (459)
T PRK06082        145 MALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVI  224 (459)
T ss_pred             HHHHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHH
Confidence            444432   33467887778887764221111110      00   0111222        111        24466655


Q ss_pred             C--CCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcC-CCCCc-----CCCCCCccEEEeccccccccC
Q 024619          137 G--PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADIVMHSATKFIAGH  205 (265)
Q Consensus       137 ~--~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~-~~~~~-----~~~~~~~di~~~s~sK~~~g~  205 (265)
                      .  .++.+|+++...+..+.+.|   ++++.++|++||+++|.||++. .|..+     ......+|+++  ++|.+++ 
T Consensus       225 ~~~~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~gv~PDiv~--~gKgl~g-  301 (459)
T PRK06082        225 EKEGGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGIEPDILC--IGKGLGG-  301 (459)
T ss_pred             hcCCCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHhHhhCCCCCEEE--ecccccC-
Confidence            4  46889999998876433445   8999999999999999999975 23332     12234578886  7999964 


Q ss_pred             CCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619          206 SDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       206 ~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      +.+..|.++.+++ +...............+|..++..+..|+
T Consensus       302 G~~P~~av~~~~~-i~~~~~~~~~~~T~~gnpl~~aaa~a~L~  343 (459)
T PRK06082        302 GLVPIAAMITKDK-YNTAAQISLGHYTHEKSPLGCAAALATIE  343 (459)
T ss_pred             CCCcceEEEEcHH-HHhhccCCCCCCCCCcCHHHHHHHHHHHH
Confidence            2235677777664 32221100001233445665555444444

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.29  E-value=7.5e-11  Score=112.00  Aligned_cols=190  Identities=23%  Similarity=0.318  Sum_probs=137.7

Q ss_pred             CCCCCCCCCCCeeeccccccCCCCCCCCCccCCC------CChh-HHHHHHHHHhHhCCC--ceEEecchHHHHH-HHHH
Q 024619           19 EFDPYGALSTPLYQTATFKQPSATENGPYDYTRS------GNPT-RDALESLLAKLDKAD--RALCFTSGMAALA-AVTH   88 (265)
Q Consensus        19 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~------g~~~-~~~l~~~l~~~~g~~--~~i~~~~g~~al~-~~~~   88 (265)
                      ...|++..-||.+.+..+..+ .   +...|+|.      |..+ .-++++.++++.|.+  +.-+...++++-. ++++
T Consensus        70 g~G~y~~~~p~~i~r~v~~~p-~---~~TaytPyQ~EisQG~Le~l~e~Qt~i~eLtGm~~aNaSl~d~atA~aEa~~~a  145 (939)
T TIGR00461        70 GMGYYGTILPPVIQRNLLENP-G---WYTAYTPYQPEISQGRLEALLNFQTVVSDLTGLPVANASLLDEGTAAAEAMALS  145 (939)
T ss_pred             CCCcCCCcCChHHHHHHHhCc-h---hhhcCCCCChhhhhHHHHHHHHHHHHHHHHHCCChhhhhccchhhHHHHHHHHH
Confidence            455666666677765433222 1   23345444      4433 778899999999998  4466666654443 3333


Q ss_pred             h-c--CCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHH
Q 024619           89 L-L--GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA  165 (265)
Q Consensus        89 ~-~--~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a  165 (265)
                      . .  +++++|++++-.||.+...++..++..|++++.++   .+++++.+  ++.++++.+|+ ..|.+.|+++|++++
T Consensus       146 ~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~~---~~~l~~~~--~~~~v~~q~Pn-~~G~ied~~~i~~~~  219 (939)
T TIGR00461       146 FNVSKKKANKFFVAKDLHPQTKSVLHTRAKPFGIEVIVVD---CSDIKKAV--DVFGCLLQYPA-TDGSILDYKQLIDAL  219 (939)
T ss_pred             HHhhcCCCCEEEECCCCCcchHHHHHHHHHhcCcEEEEEc---HHHHhhcC--CEEEEEEECCC-CCeEEecHHHHHHHH
Confidence            2 2  23488999999999999898888899999999986   45566555  57888889894 589999999999999


Q ss_pred             HHcCCEEEEeCC-cCCCCCcCCCCCCccEEEeccccc-----cccCCCceeeEEEeechhHH
Q 024619          166 HAHGALLLVDNS-IMSPVLSRPLELGADIVMHSATKF-----IAGHSDVMAGVLAVKGERLA  221 (265)
Q Consensus       166 ~~~~~~li~D~~-~~~~~~~~~~~~~~di~~~s~sK~-----~~g~~g~~~G~v~~~~~~~~  221 (265)
                      +++|.+++++.- .+.+.+..|.++|.||++++..+|     ++||.   .|++.++++...
T Consensus       220 h~~gal~~~~ad~~al~ll~~Pge~GaDi~vg~~q~fg~p~g~GGP~---aG~~a~~~~l~r  278 (939)
T TIGR00461       220 HSHKSLVSVAADLMALTLLTPPGHYGADIVLGSSQRFGVPMGYGGPH---AAFFAVKDEYNR  278 (939)
T ss_pred             HHcCCEEEEEechHHhCCcCCHHHcCCcEEeeCCCccCCCCCCCCCc---eeeeeecHhhHh
Confidence            999999999743 355666789999999999887774     33554   689988876543

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=99.28  E-value=3.4e-11  Score=105.03  Aligned_cols=154  Identities=15%  Similarity=0.074  Sum_probs=114.5

Q ss_pred             hhHHHHHHHHHhHhCCC--c-eEE-ecchHHHHH-HHHHhc-CCCCEEEEcCCCCCChHHHHH-hhcCCCCe-EEEeecC
Q 024619           55 PTRDALESLLAKLDKAD--R-ALC-FTSGMAALA-AVTHLL-GTGEEIVAGDDLYGGTDRLLS-RVTPKTGV-VVKRVNT  126 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~--~-~i~-~~~g~~al~-~~~~~~-~~g~~viv~~~~~~~~~~~~~-~~~~~~g~-~~~~~~~  126 (265)
                      ...+++.+.++++++.+  . +++ .+||+.++. ++..++ ++|++|++.. .   +-..|. +.++..|+ ++..++.
T Consensus        39 ~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~~~g~~vLv~g-~---FG~r~~~eia~~~g~~~v~~l~~  114 (374)
T TIGR01365        39 EKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLGCRGVDVLAWE-S---FGKGWVTDVTKQLKLPDVRVLEA  114 (374)
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCCCCCCeEEEEC-H---HHHHHHHHHHHhcCCCCcEEEcC
Confidence            34788899999999864  2 444 455678886 778888 5888888753 3   333444 77788888 4555543


Q ss_pred             -----CCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccc
Q 024619          127 -----CDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKF  201 (265)
Q Consensus       127 -----~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~  201 (265)
                           .++++++.  .   +.|++++....||...|+++++...  +++++++|.+.+.|..+...+ ++|+++.|.+|+
T Consensus       115 ~~g~~~~~~~ve~--~---~~v~~vhnETSTGv~npv~~i~~~~--~~~lliVDavSs~g~~~l~~d-~iDv~~tgsQK~  186 (374)
T TIGR01365       115 EYGKLPDLKKVDF--K---NDVVFTWNGTTSGVRVPNGDFIPAD--REGLTICDATSAAFAQDLDYH-KLDVVTFSWQKV  186 (374)
T ss_pred             CCCCCCCHHHcCC--C---CCEEEecCCCchheecccccccccc--CCCcEEEEccchhcCCCCChh-HCcEEEEechhc
Confidence                 37777763  1   2267888888999999998766433  489999999999888775555 499999999999


Q ss_pred             cccCCCceeeEEEeechhHHH
Q 024619          202 IAGHSDVMAGVLAVKGERLAK  222 (265)
Q Consensus       202 ~~g~~g~~~G~v~~~~~~~~~  222 (265)
                      +++|||+  ++++.+++.+..
T Consensus       187 L~~ppGl--s~v~vs~~Al~~  205 (374)
T TIGR01365       187 LGGEGAH--GMLILSPRAVAR  205 (374)
T ss_pred             cCCCCce--EEEEECHHHHHH
Confidence            9999996  888888876644

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=99.27  E-value=1.7e-10  Score=103.48  Aligned_cols=230  Identities=15%  Similarity=0.068  Sum_probs=136.3

Q ss_pred             cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCC-CCChhHHHHHHHHHhHhCC----CceEEe-cchH
Q 024619            9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTR-SGNPTRDALESLLAKLDKA----DRALCF-TSGM   80 (265)
Q Consensus         9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~-~g~~~~~~l~~~l~~~~g~----~~~i~~-~~g~   80 (265)
                      .+.++|+|.++  +..+|...|.+..+..-+...    ..+.++. ..++...++.+.+.++...    ...+++ +||+
T Consensus        37 dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~----~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~~~~f~~~sGs  112 (442)
T TIGR00709        37 EGKEYLDFLAGAGTLALGHNHPNMKQKILDYLQS----GLPLHTLDLTTPLKDAFIEALLNIIPKRKMDYKLQFPGPSGA  112 (442)
T ss_pred             CCCEEEEccccHhhhcCCCCCHHHHHHHHHHHHh----ccCccccccCcHHHHHHHHHHHHhCCCcCCCccEEEeCCCHH
Confidence            45688998643  455899888877776432221    1112121 2446788899999988743    234454 7999


Q ss_pred             HHHHHHHHh---cCCCCEEEEcCCCCCChHHHHHhhcCC----CC-----eEEEeecCCC-------------H----HH
Q 024619           81 AALAAVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTPK----TG-----VVVKRVNTCD-------------L----DE  131 (265)
Q Consensus        81 ~al~~~~~~---~~~g~~viv~~~~~~~~~~~~~~~~~~----~g-----~~~~~~~~~d-------------~----~~  131 (265)
                      +|....+.+   .....+|+....+|++...........    .+     ..+..++.++             .    +.
T Consensus       113 EA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (442)
T TIGR00709       113 DAVEAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEY  192 (442)
T ss_pred             HHHHHHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCccccccccCCchhHHHHHHHH
Confidence            998633333   233467888888888886443222211    00     1122222221             1    11


Q ss_pred             HHhhcC------CCceEEEEecCCCCccccc-c---HHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CCCCCccEEE
Q 024619          132 VASAIG------PWTKLVWVESPTNPRQQIC-D---IRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVM  195 (265)
Q Consensus       132 l~~~~~------~~~~~i~~~~~~np~G~~~-~---l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~~~~~di~~  195 (265)
                      +++.+.      .++++|+++...+..|.+. |   ++++.++|++||+++|.||++. .|..+.     .....+|+++
T Consensus       193 ~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~  272 (442)
T TIGR00709       193 FENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGIEPDFVV  272 (442)
T ss_pred             HHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHHcCCCCcEEE
Confidence            222221      4688999988887777763 2   7999999999999999999985 333321     1234578887


Q ss_pred             eccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619          196 HSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       196 ~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                        ++|.+++  |++.|+++.+++ . .............-++..+...+..|+
T Consensus       273 --~gK~l~~--G~Pigav~~~~~-~-~~~~~~~~~~T~~gnpla~aaa~a~L~  319 (442)
T TIGR00709       273 --MSKAVGG--GLPLAVLLIAPE-F-DAWQPAGHTGTFRGNQLAMVTGTEALN  319 (442)
T ss_pred             --EcccccC--CcccEEEEEchH-H-hccCCCcCCCCCCcCHHHHHHHHHHHH
Confidence              7999954  588999988765 3 211111112233444555555444443

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PRK06149 hypothetical protein; Provisional

Probab=99.27  E-value=1.6e-10  Score=112.62  Aligned_cols=231  Identities=16%  Similarity=0.121  Sum_probs=140.2

Q ss_pred             cceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHh--CCCceEEecchHHHHHHH
Q 024619            9 VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD--KADRALCFTSGMAALAAV   86 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~--g~~~~i~~~~g~~al~~~   86 (265)
                      .+.++++|.++...+|...|.+..+..-+...    .. ..++..++...++++++++++  +.+.+.+++||++|+.+.
T Consensus       583 dG~~ylD~~~~~~~lGh~hp~v~~Ai~~q~~~----l~-~~~~~~~~~~~elae~L~~~~p~~~~~v~f~~SGsEA~e~A  657 (972)
T PRK06149        583 AGRSYLDMVNNVTVLGHGHPRLAAAAARQWSL----LN-TNSRFHYAAVAEFSERLAALAPDGLDTVFLVNSGSEANDLA  657 (972)
T ss_pred             CCCEEEECCCCccccCCCCHHHHHHHHHHHHh----cc-ccccccCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHH
Confidence            35788999744445787777776665422221    11 112234567888999999987  456788999999998633


Q ss_pred             HHh---cCCCCEEEEcCCCCCChHHHHHhhcC----C--------CCeEEEeec------C--CC-----HHHHHhhc--
Q 024619           87 THL---LGTGEEIVAGDDLYGGTDRLLSRVTP----K--------TGVVVKRVN------T--CD-----LDEVASAI--  136 (265)
Q Consensus        87 ~~~---~~~g~~viv~~~~~~~~~~~~~~~~~----~--------~g~~~~~~~------~--~d-----~~~l~~~~--  136 (265)
                      +.+   ......|+..+.+|++.......+..    .        .+...+..+      .  .+     .+++++.+  
T Consensus       658 lklAr~~tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~  737 (972)
T PRK06149        658 IRLAWAASGRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEE  737 (972)
T ss_pred             HHHHHHhcCCCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHH
Confidence            332   23346688888888865422111100    0        011111111      1  11     12332222  


Q ss_pred             ----CCCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCc-CCCCCcCC------CCCCccEEEeccccc
Q 024619          137 ----GPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSI-MSPVLSRP------LELGADIVMHSATKF  201 (265)
Q Consensus       137 ----~~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~-~~~~~~~~------~~~~~di~~~s~sK~  201 (265)
                          ..++.+|+++......|.+.+    ++++.++|++||+++|.||++ +.|..+..      ....+||+  +++|.
T Consensus       738 ~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PDiv--t~gK~  815 (972)
T PRK06149        738 LDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPDII--TMAKG  815 (972)
T ss_pred             HhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCCCCCEE--Eeccc
Confidence                246889999998888888876    899999999999999999998 56655531      23457888  67999


Q ss_pred             cccCCCceeeEEEeechhHHHHHHH-HHHhccCCCChhHHHHHHhccCc
Q 024619          202 IAGHSDVMAGVLAVKGERLAKELYF-LQNAEGSGLAPFDCWICLRGVKT  249 (265)
Q Consensus       202 ~~g~~g~~~G~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~  249 (265)
                      +++  |+..|+++++++. .+.+.. .....+...+|..+...+..|+.
T Consensus       816 lg~--G~Pl~av~~~~~i-~~~~~~~~~~~sT~~gnP~~~aaala~L~~  861 (972)
T PRK06149        816 MGN--GHPLGAVITRREI-AEALEAEGYFFSSTGGSPVSCRIGMAVLDV  861 (972)
T ss_pred             ccC--CeeeEEEEEcHHH-HhhhccCCcccCCCCCCHHHHHHHHHHHHH
Confidence            954  3667888887644 333321 11123345567666665555543

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=99.27  E-value=2.8e-10  Score=101.97  Aligned_cols=204  Identities=15%  Similarity=0.101  Sum_probs=127.8

Q ss_pred             cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccC-CCCChhHHHHHHHHHhHhC---CCceEEecchHHH
Q 024619            9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYT-RSGNPTRDALESLLAKLDK---ADRALCFTSGMAA   82 (265)
Q Consensus         9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~-~~g~~~~~~l~~~l~~~~g---~~~~i~~~~g~~a   82 (265)
                      .+.++++|.++  +..+|...|.+..+..-+...    ..+... ...++...++.+.+.+...   .+.+.+.+||++|
T Consensus        52 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~----~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~~v~f~~SGsEA  127 (441)
T PRK05769         52 DGNVYLDFNAGIAVTNVGHAHPKVVKAVKEQAEK----FLHYSLTDFYYEPAVELAERLVEIAPGGFEKKVFFTNSGTES  127 (441)
T ss_pred             CCCEEEECCCchhhcccCCCCHHHHHHHHHHHHh----ccCccCcccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHH
Confidence            35678888643  445888888877775533222    111111 1234667888999988874   3567788899999


Q ss_pred             HH-HHHHh--cCCCCEEEEcCCCCCChHHHHHhhcCC-----C-----CeEEEeecCC----------C--------HHH
Q 024619           83 LA-AVTHL--LGTGEEIVAGDDLYGGTDRLLSRVTPK-----T-----GVVVKRVNTC----------D--------LDE  131 (265)
Q Consensus        83 l~-~~~~~--~~~g~~viv~~~~~~~~~~~~~~~~~~-----~-----g~~~~~~~~~----------d--------~~~  131 (265)
                      +. ++...  ....++|+....+|++.......+...     .     ...+..++.+          +        .+.
T Consensus       128 ~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (441)
T PRK05769        128 NEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDF  207 (441)
T ss_pred             HHHHHHHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCccccccccCCchHHHHHHHHHH
Confidence            85 33321  233467888888888876432222110     0     0012222221          1        123


Q ss_pred             HHh-hc-----CCCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CCCCCccEEE
Q 024619          132 VAS-AI-----GPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVM  195 (265)
Q Consensus       132 l~~-~~-----~~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~~~~~di~~  195 (265)
                      +++ .+     .+++.+|+++......|.+.+    +++|.++|++||+++|+||++. .|..+.     ......|+++
T Consensus       208 le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~a~~~~gv~pDivt  287 (441)
T PRK05769        208 IEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGVEPDIIT  287 (441)
T ss_pred             HHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccceehhhccCCCCCEEE
Confidence            444 11     246889999999888898877    9999999999999999999986 222221     1123468874


Q ss_pred             eccccccccCCCceeeEEEeechhH
Q 024619          196 HSATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       196 ~s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                        ++|.+++  |+.+|+++.+++..
T Consensus       288 --~~K~l~~--G~p~gav~~~~~i~  308 (441)
T PRK05769        288 --LAKAIAG--GLPLGAVIGRAELM  308 (441)
T ss_pred             --EcccccC--CcccEEEEEehhhh
Confidence              7899953  47788888776543

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.27  E-value=8.4e-11  Score=102.93  Aligned_cols=159  Identities=20%  Similarity=0.201  Sum_probs=108.5

Q ss_pred             HHHHHHHHHhHhCCC---------ceEEecchHHHH-HHHHHh----c----CCC-----C-EEEEcCCCCCChHHHHHh
Q 024619           57 RDALESLLAKLDKAD---------RALCFTSGMAAL-AAVTHL----L----GTG-----E-EIVAGDDLYGGTDRLLSR  112 (265)
Q Consensus        57 ~~~l~~~l~~~~g~~---------~~i~~~~g~~al-~~~~~~----~----~~g-----~-~viv~~~~~~~~~~~~~~  112 (265)
                      -.++.+++++++|.+         ..+++++|++++ .++...    .    ..|     + .|++++-+|.+..    +
T Consensus        81 E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S~~----K  156 (373)
T PF00282_consen   81 EREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYSIE----K  156 (373)
T ss_dssp             HHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-THHH----H
T ss_pred             hHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccccHHH----H
Confidence            556667888888876         367888888775 333322    1    112     2 4566777887775    6


Q ss_pred             hcCCCCeEEEeecCC-----CHHHHHhhcCC---C---ceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCC
Q 024619          113 VTPKTGVVVKRVNTC-----DLDEVASAIGP---W---TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSP  181 (265)
Q Consensus       113 ~~~~~g~~~~~~~~~-----d~~~l~~~~~~---~---~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~  181 (265)
                      .+...|+.++.++.+     |++++++++.+   +   +-+|+.+.....+|.+.|+++|.++|+++++++++|.+|+..
T Consensus       157 aa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~wlHVDaA~gg~  236 (373)
T PF00282_consen  157 AARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICEKYNIWLHVDAAYGGS  236 (373)
T ss_dssp             HHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-EEEEEETTGGG
T ss_pred             hcceeeeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhccccceeeeeccccccc
Confidence            667788888888755     67888877642   2   335666778889999999999999999999999999999864


Q ss_pred             CCcCC----C---CCCccEEEeccccccccCCCceeeEEEeechhHH
Q 024619          182 VLSRP----L---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA  221 (265)
Q Consensus       182 ~~~~~----~---~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~  221 (265)
                      .+..+    .   -..+|=+..++|||++.|-+  +|+++.+++...
T Consensus       237 ~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~--~~~~l~r~~~~l  281 (373)
T PF00282_consen  237 ALLSPEYRHLLFGIERADSITIDPHKWLGVPYG--CGVLLVRDKSDL  281 (373)
T ss_dssp             GGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS---EEEEESSGGGH
T ss_pred             ccccccccccccccccccccccchhhhhcCCcc--ceeEEeecccch
Confidence            43211    1   12468899999999988865  699988887543

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=99.27  E-value=2.8e-10  Score=102.13  Aligned_cols=232  Identities=16%  Similarity=0.180  Sum_probs=139.6

Q ss_pred             cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCC---CceEEecchHHHH
Q 024619            9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA---DRALCFTSGMAAL   83 (265)
Q Consensus         9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~---~~~i~~~~g~~al   83 (265)
                      .+.++|+|.+  ++..+|...|.+.++..-+...   ...+.+....++...++.+++.+.+..   +.+.+++||++|+
T Consensus        54 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~---~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~  130 (443)
T PRK06058         54 DGNRLIDLGSGIAVTSVGNSAPRVVEAVREQVAR---FTHTCFMVTPYEGYVAVAEQLNRLTPGDHEKRSALFNSGAEAV  130 (443)
T ss_pred             CCCEEEEcCcchhhhccCCCCHHHHHHHHHHHHh---ccCccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHH
Confidence            4567889864  2456999888888776533322   111222222346678899999888742   3578889999998


Q ss_pred             HHHHHh---cCCCCEEEEcCCCCCChHHHHHhhcC-----CCCe-----EEEeecC----CC---------------HHH
Q 024619           84 AAVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTP-----KTGV-----VVKRVNT----CD---------------LDE  131 (265)
Q Consensus        84 ~~~~~~---~~~g~~viv~~~~~~~~~~~~~~~~~-----~~g~-----~~~~~~~----~d---------------~~~  131 (265)
                      ...+.+   ....++|+...++|++..........     ..+.     .+..++.    .+               .+.
T Consensus       131 e~AlklAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (443)
T PRK06058        131 ENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAITV  210 (443)
T ss_pred             HHHHHHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCcccccccccccchHHHHHHHHHH
Confidence            633332   33457899889999888644222111     0010     1112221    11               222


Q ss_pred             HHhhcC-CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCc-----CCCCCCccEEEecccc
Q 024619          132 VASAIG-PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADIVMHSATK  200 (265)
Q Consensus       132 l~~~~~-~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~-----~~~~~~~di~~~s~sK  200 (265)
                      +++.+. +++++|+++..+...|.+.+    +++|.++|++||+++|.||++. .+..+     .......|+++.  +|
T Consensus       211 l~~~~~~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa~~~~gv~PDiv~~--gK  288 (443)
T PRK06058        211 IEKQVGADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGIVPDLITT--AK  288 (443)
T ss_pred             HHHhhCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhhHHHhcCCCCCEEEE--cc
Confidence            334443 57889999877665666643    8999999999999999999985 33222     122345688755  79


Q ss_pred             ccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619          201 FIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       201 ~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      .++  +|++.|+++.+++.. +.+.......+..-++..++..++.|+
T Consensus       289 ~l~--~G~Pi~av~~~~~i~-~~~~~~~~~~T~~gnpl~~aaa~a~L~  333 (443)
T PRK06058        289 GIA--GGLPLSAVTGRAEIM-DAPHPGGLGGTYGGNPVACAAALAAIE  333 (443)
T ss_pred             ccc--CCCccEEEEEcHHHH-hhccCCCCCCCCCCCHHHHHHHHHHHH
Confidence            995  368899998876543 323222222334455666555555444

>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=99.26  E-value=2.7e-11  Score=101.36  Aligned_cols=183  Identities=20%  Similarity=0.216  Sum_probs=105.8

Q ss_pred             hhHHHHHHHHHhHh---C---CC-ceEEecchH-HHHH-HHHHhc----CC--CCEEEEcCCCCCChHHHHHhhcCCCCe
Q 024619           55 PTRDALESLLAKLD---K---AD-RALCFTSGM-AALA-AVTHLL----GT--GEEIVAGDDLYGGTDRLLSRVTPKTGV  119 (265)
Q Consensus        55 ~~~~~l~~~l~~~~---g---~~-~~i~~~~g~-~al~-~~~~~~----~~--g~~viv~~~~~~~~~~~~~~~~~~~g~  119 (265)
                      ....+|++.+.+++   |   ++ .-|++++|+ |-+. ++-++-    .+  --.|+...|-|+.|.... ..++....
T Consensus        43 f~s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt-~~f~s~~y  121 (363)
T PF04864_consen   43 FISPELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQT-DFFDSRLY  121 (363)
T ss_dssp             TS-HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHC-CCT-BTTE
T ss_pred             eccHHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHHH-HhccccCc
Confidence            34667777776665   3   23 578888886 6665 444442    11  236899999999997553 44444444


Q ss_pred             EEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEecc
Q 024619          120 VVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSA  198 (265)
Q Consensus       120 ~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~  198 (265)
                      ++.-    |...+...-.+.+-+=++++||||.|.+.     -.+.+.-+..+|.|-+|..+.+. .+...+.||+++|+
T Consensus       122 ~w~G----da~~~~~~~~~~~~IElVTSPNNPDG~lr-----~~V~~g~~~k~I~D~AYYWPhyTpI~~~aD~DiMLFT~  192 (363)
T PF04864_consen  122 KWAG----DASNFKNSDNPSPYIELVTSPNNPDGQLR-----EAVLNGSSGKVIHDLAYYWPHYTPITAPADHDIMLFTL  192 (363)
T ss_dssp             EEEE----ECCCGTT-S-CCGEEEEEESS-TTT-----------SSTTTEEEEEEE-TT-STTTS---S-B--SEEEEEH
T ss_pred             cccc----cHHhhccCCCCCCeEEEEeCCCCCccccc-----chhcCCCCcceeeeeeeecccccccCCCCCCceEEEEE
Confidence            4432    22222211112233448999999999984     12234456678999999999885 45566789999999


Q ss_pred             ccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619          199 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       199 sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      ||.- |+.|.|.||.+.+++.+.++...+......+++...+..+++-|+
T Consensus       193 SK~T-GHAGSR~GWAlVKD~~Va~kM~~y~~lnTiGvS~dsQLRa~kiLk  241 (363)
T PF04864_consen  193 SKLT-GHAGSRFGWALVKDEEVAKKMTKYMELNTIGVSRDSQLRALKILK  241 (363)
T ss_dssp             HHHC-S-GGG-EEEEEES-HHHHHHHHHHHHHHCSS--HHHHHHHHHHHH
T ss_pred             eccc-CccccccceeeecCHHHHHHHHHHHHHhcccCcHHHHHHHHHHHH
Confidence            9987 899999999999999999888888888888888776655444443

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.26  E-value=2.7e-10  Score=101.66  Aligned_cols=228  Identities=12%  Similarity=0.090  Sum_probs=139.5

Q ss_pred             cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCC--CceEEecchHHHHH
Q 024619            9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA--DRALCFTSGMAALA   84 (265)
Q Consensus         9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~--~~~i~~~~g~~al~   84 (265)
                      .+.++|+|.++  ...+|...|.+.++..-+....   .  .+ ...++...++.+.+.+..+.  +.+.+.+||++|..
T Consensus        51 dG~~yiD~~~g~~~~~lGh~~p~v~~ai~~q~~~~---~--~~-~~~~~~~~~la~~L~~~~~~~~~~v~f~~SGsEA~e  124 (433)
T PRK00615         51 LGKTFIDFCGSWGSLIHGHSHPKICDAIQQGAERG---T--SY-GLTSEQEILFAEELFSYLGLEDHKIRFVSSGTEATM  124 (433)
T ss_pred             CCCEEEEcccchhccccCCCCHHHHHHHHHHHHhC---C--CC-CCCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHH
Confidence            35678888643  3458988888887764333221   1  11 11345677888888888754  36888899999986


Q ss_pred             HHHHh---cCCCCEEEEcCCCCCChHHH-HHh--hcC--------CC-----CeEEEeecCCCHHHHHhhcC---CCceE
Q 024619           85 AVTHL---LGTGEEIVAGDDLYGGTDRL-LSR--VTP--------KT-----GVVVKRVNTCDLDEVASAIG---PWTKL  142 (265)
Q Consensus        85 ~~~~~---~~~g~~viv~~~~~~~~~~~-~~~--~~~--------~~-----g~~~~~~~~~d~~~l~~~~~---~~~~~  142 (265)
                      ..+.+   .....+|+....+|++.... +..  ...        ..     ......++..|.+++++.+.   +++++
T Consensus       125 ~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~aa  204 (433)
T PRK00615        125 TAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPYNDFQIFQTVMNSLGHRVAG  204 (433)
T ss_pred             HHHHHHHHhhCCCEEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhcCCceEE
Confidence            33333   22346788888888885311 000  000        00     00112234457788877763   46789


Q ss_pred             EEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCCC-Cc-----CCCCCCccEEEeccccccccCCCceeeE
Q 024619          143 VWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPV-LS-----RPLELGADIVMHSATKFIAGHSDVMAGV  212 (265)
Q Consensus       143 i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~~~~-~~-----~~~~~~~di~~~s~sK~~~g~~g~~~G~  212 (265)
                      |+++......|.+.|    +++|.++|++||+++|+||++. |. .+     .......|+++  ++|.+++  |+.+|+
T Consensus       205 vI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~t-G~R~G~~ga~~~~gv~PDi~~--~gK~lgg--G~p~~a  279 (433)
T PRK00615        205 VIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVT-GFRVAQGGAAAIYHVKPDITV--YGKILGG--GLPAAA  279 (433)
T ss_pred             EEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccc-cccccHhHHHHhcCCCCCeEE--EcccccC--Ccceee
Confidence            999999888898866    5799999999999999999983 33 21     11233578864  7999953  355788


Q ss_pred             EEeechhHHHHHHHH---HHhccCCCChhHHHHHHhccC
Q 024619          213 LAVKGERLAKELYFL---QNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       213 v~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      ++++++.+ +.+...   ....+...+|..++..+..|+
T Consensus       280 v~~~~~i~-~~~~~~~~~~~~~T~~g~p~~~aa~la~L~  317 (433)
T PRK00615        280 VVAHKSIM-DHLAPEGTIFQAGTLSGNPLAMAAGKASIN  317 (433)
T ss_pred             eeecHHHH-hhhcCCCCcccCCCCcccHHHHHHHHHHHH
Confidence            88876543 322211   112233345666655544444

>PRK07678 aminotransferase; Validated

Probab=99.23  E-value=6.6e-10  Score=99.85  Aligned_cols=233  Identities=16%  Similarity=0.105  Sum_probs=137.9

Q ss_pred             cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCC-ceEEecchHHHHH-
Q 024619            9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD-RALCFTSGMAALA-   84 (265)
Q Consensus         9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~-~~i~~~~g~~al~-   84 (265)
                      .+.++|+|.+  ++..+|...|.+..+..-+....    .+......++...++.+.+.+..+.. .+.+.+||++|+. 
T Consensus        45 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~----~~~~~~~~~~~~~~lae~l~~~~~~~~~v~f~~sGseA~e~  120 (451)
T PRK07678         45 QGNRYLDGMSGLWCVNVGYGRKELAEAAYEQLKTL----SYFPLTQSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANET  120 (451)
T ss_pred             CCCEEEEccccHHhhcCCCCCHHHHHHHHHHHHhc----CccccccCCHHHHHHHHHHHHhCCCCCEEEEeCCcHHHHHH
Confidence            3567888853  23458988888877654332221    11111124566778889998887554 5677789999885 


Q ss_pred             HHHHh---c----CCC-CEEEEcCCCCCChHHHHHhhcCCC------C---eEEEeecCCC-----------------HH
Q 024619           85 AVTHL---L----GTG-EEIVAGDDLYGGTDRLLSRVTPKT------G---VVVKRVNTCD-----------------LD  130 (265)
Q Consensus        85 ~~~~~---~----~~g-~~viv~~~~~~~~~~~~~~~~~~~------g---~~~~~~~~~d-----------------~~  130 (265)
                      ++...   .    ++| .+|+....+|++............      +   ..+..++.++                 .+
T Consensus       121 AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (451)
T PRK07678        121 AFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVK  200 (451)
T ss_pred             HHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCCccccccccCChHHHHHHHHH
Confidence            33322   1    123 578888888888753321111100      0   0112222111                 12


Q ss_pred             HHHhhc----CCCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCc-CCCCCc-----CCCCCCccEEEe
Q 024619          131 EVASAI----GPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSI-MSPVLS-----RPLELGADIVMH  196 (265)
Q Consensus       131 ~l~~~~----~~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~-~~~~~~-----~~~~~~~di~~~  196 (265)
                      .+++.+    .+++.+|+++....-.|.+.+    ++++.++|++||+++|+||++ +.|..+     ......+|+++ 
T Consensus       201 ~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~gv~PDivt-  279 (451)
T PRK07678        201 EIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAFGFMNYGVKPDIIT-  279 (451)
T ss_pred             HHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCchhHHHHhcCCCCCEEE-
Confidence            244444    256899999998877777754    899999999999999999998 444433     12344689884 


Q ss_pred             ccccccccCCCceeeEEEeechhHHHHHHH------HHHhccCCCChhHHHHHHhccCc
Q 024619          197 SATKFIAGHSDVMAGVLAVKGERLAKELYF------LQNAEGSGLAPFDCWICLRGVKT  249 (265)
Q Consensus       197 s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~  249 (265)
                       ++|.+++ +.+..|.++.+++.. +.+..      +....+...+|..++..+..|+.
T Consensus       280 -~gK~lgg-G~~Pi~av~~~~~i~-~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~  335 (451)
T PRK07678        280 -MAKGITS-AYLPLSATAVKKEIY-EAFKGKGEYEHFRHVNTFGGNPAACALALKNLEI  335 (451)
T ss_pred             -eeccccc-CCcceeEEEEcHHHH-HHHhccCcccccccCCCCCcCHHHHHHHHHHHHH
Confidence             5999964 235678887877543 32321      11233344556666655554443

>PRK06062 hypothetical protein; Provisional

Probab=99.22  E-value=6.2e-10  Score=99.96  Aligned_cols=232  Identities=13%  Similarity=0.131  Sum_probs=139.8

Q ss_pred             cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhC--CCceEEecchHHHHH
Q 024619            9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK--ADRALCFTSGMAALA   84 (265)
Q Consensus         9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g--~~~~i~~~~g~~al~   84 (265)
                      .+.++|+|.+  ++..+|...|.+..+..-+...    ..+......++...++.+++.++..  .+.+.+.+||++|..
T Consensus        51 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~----~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve  126 (451)
T PRK06062         51 EGRRYLDFSSQLVNTNIGHQHPKVVAAIQEQAAR----LCTVAPAHANDARSEAARLIAERAPGDLSKVFFTNGGADANE  126 (451)
T ss_pred             CCCEEEEcccCHHhhcCCCCCHHHHHHHHHHHHh----cCCcCCccCCHHHHHHHHHHHHhCCCCCCEEEEcCChHHHHH
Confidence            4567888864  2455899888888775533222    1111122245678889999988874  356888889999986


Q ss_pred             HHHHh---cCCCCEEEEcCCCCCChHHHHHhhcCC----------CCeEEEeecC---------CC-------HHHHHhh
Q 024619           85 AVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTPK----------TGVVVKRVNT---------CD-------LDEVASA  135 (265)
Q Consensus        85 ~~~~~---~~~g~~viv~~~~~~~~~~~~~~~~~~----------~g~~~~~~~~---------~d-------~~~l~~~  135 (265)
                      ..+.+   ...+.+|+....+|++...........          .|+.....+.         .+       ++.+++.
T Consensus       127 ~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~  206 (451)
T PRK06062        127 HAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERALAHLERV  206 (451)
T ss_pred             HHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCChHHHHHHHHHHHHHH
Confidence            33332   233467888888888875332121110          1111111110         12       4556666


Q ss_pred             cC----CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCc-----CCCCCCccEEEeccccc
Q 024619          136 IG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADIVMHSATKF  201 (265)
Q Consensus       136 ~~----~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~-----~~~~~~~di~~~s~sK~  201 (265)
                      +.    +++.+|+++......|.+.+    +++|.++|++||+++|+||++. .|..+     ......+|++  +++|.
T Consensus       207 l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~~~~gv~PDi~--t~gK~  284 (451)
T PRK06062        207 IELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFGVVPDLI--TFAKG  284 (451)
T ss_pred             HHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHHHHHhcCCCCCee--eechh
Confidence            63    45789999999888888876    9999999999999999999986 33332     1223457876  57999


Q ss_pred             cccCCCc-eeeEEEeechhHHHHHHHH--HHhccCCCChhHHHHHHhccCc
Q 024619          202 IAGHSDV-MAGVLAVKGERLAKELYFL--QNAEGSGLAPFDCWICLRGVKT  249 (265)
Q Consensus       202 ~~g~~g~-~~G~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~  249 (265)
                      +++  |+ ..|.++.+++ +.+.+...  .......-+|..++..+..|+.
T Consensus       285 lgg--G~~Pigav~~~~~-i~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~  332 (451)
T PRK06062        285 VNS--GYVPLGGVAISEA-IAATFADRPYPGGLTYSGHPLACAAAVATINA  332 (451)
T ss_pred             hhc--CCcCcEEEEEcHH-HHHHhccCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence            964  32 3566666664 44433211  1111223345566555554443

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.19  E-value=4.6e-10  Score=99.97  Aligned_cols=232  Identities=12%  Similarity=0.060  Sum_probs=135.0

Q ss_pred             cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhC--CCceEEecchHHHHH
Q 024619            9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK--ADRALCFTSGMAALA   84 (265)
Q Consensus         9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g--~~~~i~~~~g~~al~   84 (265)
                      .+.++++|.+  ++..+|...|.+.++..-+....   ....+....++...++.+.+.+...  .+.+.+.+||++|+.
T Consensus        38 dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~---~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e  114 (422)
T PRK05630         38 DGSTVIDAMSSWWSAAHGHGHPRLKAAAHKQIDTM---SHVMFGGLTHEPAIKLTRKLLNLTDNGLDHVFYSDSGSVSVE  114 (422)
T ss_pred             CCCEEEEcchhHHHhcCCCCCHHHHHHHHHHHHhC---CCcccCCcCCHHHHHHHHHHHhhCCCCcCEEEEeCCcHHHHH
Confidence            4567888864  35558998888887765333221   1111111234567888888988864  456888899999986


Q ss_pred             HHHHhcC--------C-CCEEEEcCCCCCChHHHHHhhcCC-------CC---eEEEeecCC-----C-------HHHHH
Q 024619           85 AVTHLLG--------T-GEEIVAGDDLYGGTDRLLSRVTPK-------TG---VVVKRVNTC-----D-------LDEVA  133 (265)
Q Consensus        85 ~~~~~~~--------~-g~~viv~~~~~~~~~~~~~~~~~~-------~g---~~~~~~~~~-----d-------~~~l~  133 (265)
                      ..+.+..        + +.+|+....+|++...........       .+   ..+..++.+     +       .+.++
T Consensus       115 ~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  194 (422)
T PRK05630        115 VAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPPVRGSSPQEISEYLRSLE  194 (422)
T ss_pred             HHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCcccCCChHHHHHHHHHHH
Confidence            3333211        2 357888888888764322111110       00   011222211     1       23444


Q ss_pred             hhcCCCceEEEEecC-CCCccccc----cHHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CCCCCccEEEecccccc
Q 024619          134 SAIGPWTKLVWVESP-TNPRQQIC----DIRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATKFI  202 (265)
Q Consensus       134 ~~~~~~~~~i~~~~~-~np~G~~~----~l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~~~~~di~~~s~sK~~  202 (265)
                      +.+.+++.+|+++.. ..-.|.+.    .++++.++|++||+++|+||++. .|..+.     .....+||+  +++|.+
T Consensus       195 ~~~~~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDi~--t~gK~l  272 (422)
T PRK05630        195 LLIDETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFATLAAGVTPDIM--CVGKAL  272 (422)
T ss_pred             HHHhhceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCchhhHHHhcCCCCCee--eeechh
Confidence            445568999999984 76667663    37999999999999999999983 222221     123357888  679998


Q ss_pred             ccCCC-ceeeEEEeechhHHHHHHH------HHHhccCCCChhHHHHHHhccC
Q 024619          203 AGHSD-VMAGVLAVKGERLAKELYF------LQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       203 ~g~~g-~~~G~v~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      +|  | ..+|+++++++. .+.+..      +....+...+|..+...+..|+
T Consensus       273 ~g--G~~p~~av~~~~~i-~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~  322 (422)
T PRK05630        273 TG--GFMSFAATLCTDKV-AQLISTPNGGGALMHGPTFMANPLACAVAHASLE  322 (422)
T ss_pred             hc--CccccceeeccHHH-HHHHhccCCCCccccCCCCcCCHHHHHHHHHHHH
Confidence            54  2 236777776643 332221      0112333455666555444444

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=99.18  E-value=1e-09  Score=98.66  Aligned_cols=231  Identities=14%  Similarity=0.095  Sum_probs=137.2

Q ss_pred             cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCC--CceEEecchHHHHH
Q 024619            9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA--DRALCFTSGMAALA   84 (265)
Q Consensus         9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~--~~~i~~~~g~~al~   84 (265)
                      .+.++++|.++  +..+|...|.+..+..-+.... ......|.  .++...++.+.+.+....  +.+.+.+||++|+.
T Consensus        51 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~ql~~~-~~~~~~~~--~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEA~e  127 (457)
T PRK05639         51 DGNVFIDFLAGAAAASTGYSHPKLVKAVQEQVALI-QHSMIGYT--HSERAIRVAEKLAEISPIENPKVLFGLSGSDAVD  127 (457)
T ss_pred             CCCEEEECCcCHHhhccCCCCHHHHHHHHHHHHhc-cccccCcc--CCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHH
Confidence            45788899643  4569998888877765332221 01111111  235677888999888753  46888889999986


Q ss_pred             HHHHh---cCCCCEEEEcCCCCCChHHHHHhhcC-----CCCe-----EEEeecCC-------------CHH--------
Q 024619           85 AVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTP-----KTGV-----VVKRVNTC-------------DLD--------  130 (265)
Q Consensus        85 ~~~~~---~~~g~~viv~~~~~~~~~~~~~~~~~-----~~g~-----~~~~~~~~-------------d~~--------  130 (265)
                      ..+.+   ...+.+|+....+|++..........     ..+.     .+..++.+             +.+        
T Consensus       128 ~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (457)
T PRK05639        128 MAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDELINRFLD  207 (457)
T ss_pred             HHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCccccccccccccCCHHHHHHHHHH
Confidence            33332   23346788888888886543222111     1111     12233322             122        


Q ss_pred             HHHhhc------CCCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCc-----CCCCCCccEE
Q 024619          131 EVASAI------GPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADIV  194 (265)
Q Consensus       131 ~l~~~~------~~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~-----~~~~~~~di~  194 (265)
                      .+++.+      ..++.+|+++......|.+.+    +++|.++|++||+++|+||++. .|..+     ......+|++
T Consensus       208 ~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv  287 (457)
T PRK05639        208 YLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFEVKPDLI  287 (457)
T ss_pred             HHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCchHHHHHhcCCCCCEE
Confidence            233332      357899999998887777643    7999999999999999999986 22222     1223468988


Q ss_pred             EeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619          195 MHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       195 ~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      +  ++|.+++  |+..|+++.+++.. +... .........+|..+...+..|+
T Consensus       288 ~--~gK~l~g--G~pi~av~~~~~i~-~~~~-~~~~~T~~g~p~~~aaa~a~l~  335 (457)
T PRK05639        288 I--FGKGVAS--GMGLSGVIGRKELM-DLTS-GSALLTPAANPVISAAAEATLE  335 (457)
T ss_pred             E--echhhcC--CCcceeEEehHHHH-hhcC-CCcccCCCcCHHHHHHHHHHHH
Confidence            7  7999964  35568887776544 3211 1112233455655555444443

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=99.17  E-value=5.2e-10  Score=99.69  Aligned_cols=232  Identities=12%  Similarity=0.060  Sum_probs=133.2

Q ss_pred             ceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCC--CceEEecchHHHHHH
Q 024619           10 STLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA--DRALCFTSGMAALAA   85 (265)
Q Consensus        10 ~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~--~~~i~~~~g~~al~~   85 (265)
                      +.++++|.+  ++..+|...|.+.++...+....   ....+....++...++.+++.++...  +.+.+.+||++|+..
T Consensus        42 G~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~---~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~f~~SGsEAve~  118 (428)
T PRK07986         42 GRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAM---SHVMFGGITHPPAIELCRKLVAMTPQPLECVFLADSGSVAVEV  118 (428)
T ss_pred             CCEEEEcchhHHhhcCCCCCHHHHHHHHHHHhhc---CCccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCCcHHHHHH
Confidence            467888853  34568888877777764332221   11111112446688888999888743  467888899999863


Q ss_pred             HHHh---c-----CCCCEEEEcCCCCCChHHHHHhhcCC-------CC---eEEEeecC-----------CCHHHHHhhc
Q 024619           86 VTHL---L-----GTGEEIVAGDDLYGGTDRLLSRVTPK-------TG---VVVKRVNT-----------CDLDEVASAI  136 (265)
Q Consensus        86 ~~~~---~-----~~g~~viv~~~~~~~~~~~~~~~~~~-------~g---~~~~~~~~-----------~d~~~l~~~~  136 (265)
                      .+.+   .     .+..+|+....+|++.......+...       ++   ..+..++.           .|.+++++.+
T Consensus       119 AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l  198 (428)
T PRK07986        119 AMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARLM  198 (428)
T ss_pred             HHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccchhhHHHHHHHHHHHH
Confidence            3322   1     23467888888888754321111110       00   01112221           2445666666


Q ss_pred             C---CCceEEEEecC-CCCccccc----cHHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CCCCCccEEEecccccc
Q 024619          137 G---PWTKLVWVESP-TNPRQQIC----DIRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATKFI  202 (265)
Q Consensus       137 ~---~~~~~i~~~~~-~np~G~~~----~l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~~~~~di~~~s~sK~~  202 (265)
                      .   +++.+|+++.. +.-.|.+.    .+++|.++|++||+++|+||++. .|..+.     .....+|+++  ++|.+
T Consensus       199 ~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~fa~~~~gv~PDi~t--~gK~l  276 (428)
T PRK07986        199 AAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFACEHAGIAPDILC--LGKAL  276 (428)
T ss_pred             HhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCeeeecccCCCCCEEE--echhh
Confidence            4   46788999885 55445442    28999999999999999999983 222221     2233578874  79998


Q ss_pred             ccCCC-ceeeEEEeechhHHHHHHHH-----HHhccCCCChhHHHHHHhccCc
Q 024619          203 AGHSD-VMAGVLAVKGERLAKELYFL-----QNAEGSGLAPFDCWICLRGVKT  249 (265)
Q Consensus       203 ~g~~g-~~~G~v~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~  249 (265)
                      +|  | +..|.++++++ +.+.+...     ........+|..++..+..|+.
T Consensus       277 ~g--G~~p~~av~~~~~-i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~  326 (428)
T PRK07986        277 TG--GTMTLSATLTTRE-VAETISNGEAGCFMHGPTFMGNPLACAVANASLSL  326 (428)
T ss_pred             hC--CcccCcchhchHH-HHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHHH
Confidence            53  4 34666666654 43433221     1122233446666555554443

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=99.16  E-value=5.7e-10  Score=97.76  Aligned_cols=164  Identities=24%  Similarity=0.277  Sum_probs=107.8

Q ss_pred             CCh-hHHHHHHHHHhHhCCC--ceEEecchHHHH-HHHHH--h-cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeec
Q 024619           53 GNP-TRDALESLLAKLDKAD--RALCFTSGMAAL-AAVTH--L-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN  125 (265)
Q Consensus        53 g~~-~~~~l~~~l~~~~g~~--~~i~~~~g~~al-~~~~~--~-~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~  125 (265)
                      |.. ...+++..++++.|.+  +.-+...++++- .++++  . -+++++|+++...||.+...++..+...|++++.++
T Consensus       107 G~Lq~lfe~Qs~i~eLTGmdvaNaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~  186 (429)
T PF02347_consen  107 GRLQALFEYQSMICELTGMDVANASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAPLGIEIVEVP  186 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSEE-SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-
T ss_pred             HHHHHHHHHHHHHHHhhCCCccCCCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhhCCeEEEEec
Confidence            443 3778999999999999  234455544222 22222  2 333469999999999999888888999999999998


Q ss_pred             CCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCC--cCCCCCcCCCCCCccEEEeccccccc
Q 024619          126 TCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS--IMSPVLSRPLELGADIVMHSATKFIA  203 (265)
Q Consensus       126 ~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~--~~~~~~~~~~~~~~di~~~s~sK~~~  203 (265)
                      ..+.....   .+++.+|++.+|+. .|.+.++++|+++++++|.++++ .+  .+.+.+..|.++|.||++++ +|.|+
T Consensus       187 ~~~~~~~d---~~~~a~v~vq~Pn~-~G~~ed~~~i~~~~h~~gal~~~-~ad~~aL~~l~~Pge~GADI~vg~-~Q~fg  260 (429)
T PF02347_consen  187 LDEDGTTD---DDDTAAVMVQNPNT-FGVFEDIKEIADIAHAAGALVIV-GADPNALGGLKSPGEYGADIVVGE-HQTFG  260 (429)
T ss_dssp             BBTTCSB----STTEEEEEEESS-T-TSB--THHHHHHHHHHTT-EEEE-CGGCCGCCTC--GGGGT-SEEEEC-CTTTT
T ss_pred             ccccCCcc---ccCeEEEEeecCCC-CceEeeHHHHHHHHHHcCCEEEE-ecCHHHHhCcCChhhcCccEEeeC-CCCCc
Confidence            65321111   67899999999954 89999999999999999999877 44  35666778999999999877 67443


Q ss_pred             cCCCc---eeeEEEeechhHHH
Q 024619          204 GHSDV---MAGVLAVKGERLAK  222 (265)
Q Consensus       204 g~~g~---~~G~v~~~~~~~~~  222 (265)
                      -|.|.   -.|++.++++....
T Consensus       261 ~p~~~GGP~~G~~a~~~~l~r~  282 (429)
T PF02347_consen  261 IPMGFGGPGAGFFAVREDLVRQ  282 (429)
T ss_dssp             ---CCC-S--EEEEE-GGGGGG
T ss_pred             ccCCCCCCCeeeEEEhhhhhhh
Confidence            22111   15899888875543

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>PRK07480 putative aminotransferase; Validated

Probab=99.15  E-value=1e-09  Score=98.65  Aligned_cols=232  Identities=14%  Similarity=0.139  Sum_probs=135.3

Q ss_pred             cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccC--CCCChhHHHHHHHHHhHhCC--CceEEecchHHH
Q 024619            9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYT--RSGNPTRDALESLLAKLDKA--DRALCFTSGMAA   82 (265)
Q Consensus         9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~--~~g~~~~~~l~~~l~~~~g~--~~~i~~~~g~~a   82 (265)
                      .+.++|+|.+  ++..+|...|.+.++..-+...    ..+...  ...++...++.+++.+....  +.+.+.+||++|
T Consensus        48 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~----~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA  123 (456)
T PRK07480         48 EGNKILDGMAGLWCVNVGYGRKELADAAARQMRE----LPYYNTFFKTTHPPAIELAAKLAEVAPPGFNHVFFTNSGSEA  123 (456)
T ss_pred             CCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHh----cCCcccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHH
Confidence            3467888853  2345888888877775433222    111111  12346788899999988743  468888999998


Q ss_pred             HH-HHHHh--c----C-C-CCEEEEcCCCCCChHHHHHhhc------CCCCe---EEEeecCC---------C-------
Q 024619           83 LA-AVTHL--L----G-T-GEEIVAGDDLYGGTDRLLSRVT------PKTGV---VVKRVNTC---------D-------  128 (265)
Q Consensus        83 l~-~~~~~--~----~-~-g~~viv~~~~~~~~~~~~~~~~------~~~g~---~~~~~~~~---------d-------  128 (265)
                      .. ++...  .    . + ..+|+....+|++.........      +..+.   .+..++.+         +       
T Consensus       124 ~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  203 (456)
T PRK07480        124 NDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLA  203 (456)
T ss_pred             HHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCcccccccCCChHHHHHH
Confidence            85 33322  1    1 3 3468888888887642211110      00110   11122211         1       


Q ss_pred             -HHHHHhhc----CCCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CCCCCccE
Q 024619          129 -LDEVASAI----GPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADI  193 (265)
Q Consensus       129 -~~~l~~~~----~~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~~~~~di  193 (265)
                       .+.+++.+    .+++.+|+++..+...|.+.+    +++|.++|++||+++|+||++. .|..+.     .....+|+
T Consensus       204 ~~~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDi  283 (456)
T PRK07480        204 AARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEWFGSQHFGIKPDL  283 (456)
T ss_pred             HHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhhhhhcCCCCCe
Confidence             24554444    256889999998887787754    8999999999999999999983 444331     22345788


Q ss_pred             EEeccccccccCCCc-eeeEEEeechhHHHHHH----HHHHhccCCCChhHHHHHHhccCc
Q 024619          194 VMHSATKFIAGHSDV-MAGVLAVKGERLAKELY----FLQNAEGSGLAPFDCWICLRGVKT  249 (265)
Q Consensus       194 ~~~s~sK~~~g~~g~-~~G~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~  249 (265)
                      +  +++|.+++  |+ ..|.++.+++ +.+.+.    .+....+..-+|..++..++.|+.
T Consensus       284 v--~~gK~l~g--G~~Pi~av~~~~~-i~~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~  339 (456)
T PRK07480        284 M--TIAKGLTS--GYIPMGAVGVGDR-VAEVLIEEGGEFNHGFTYSGHPVAAAVALANLRI  339 (456)
T ss_pred             e--eeehhhcc--CCccceEEEEcHH-HHHHHhcCCCCcccCCCCCcCHHHHHHHHHHHHH
Confidence            7  56999864  32 3566666654 434331    012223344556666665555543

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.14  E-value=3e-10  Score=107.51  Aligned_cols=195  Identities=18%  Similarity=0.195  Sum_probs=138.8

Q ss_pred             EeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC------CChh-HHHHHHHHHhHhCCC--ceEEecchHH--
Q 024619           13 LMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS------GNPT-RDALESLLAKLDKAD--RALCFTSGMA--   81 (265)
Q Consensus        13 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~------g~~~-~~~l~~~l~~~~g~~--~~i~~~~g~~--   81 (265)
                      ..+|- +..|++..-|++++...+.. ..   +...|+|+      |... .-+++..++++.|.+  +.-+...+++  
T Consensus        80 ~~~fi-G~G~y~~~~P~vi~~~i~~~-~~---~yTaYTPYQpEisQG~Lqal~e~Qtmi~~LtGm~vaNASl~D~atA~a  154 (954)
T PRK12566         80 WTSLI-GMGYHGTVTPTVILRNVLEN-PG---WYTAYTPYQPEIAQGRLEALLNFQQMTIDLTGLDLANASLLDEATAAA  154 (954)
T ss_pred             ccccc-cccccCCcCcHHHHHHHHhC-ch---hhhcCCCCCchhhhHHHHHHHHHHHHHHHHhCchhhhhhhccchhHHH
Confidence            33454 56677777777774443222 22   33445555      4433 778889999999998  5566666653  


Q ss_pred             -HHHHHHHhcC-CCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHH
Q 024619           82 -ALAAVTHLLG-TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIR  159 (265)
Q Consensus        82 -al~~~~~~~~-~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~  159 (265)
                       |+.+.....+ +..+|+|++..||.+...++..++..|++++.      +++++.+..++.+|++.+|+ ..|.+.|++
T Consensus       155 EA~~ma~~~~~~k~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~------~~~~~~~~~~~~~v~vq~P~-~~G~i~d~~  227 (954)
T PRK12566        155 EAMALAKRVAKSKSNRFFVDEHCHPQTLSVLRTRAEGFGFELVV------DAVDNLAAHAVFGALLQYPD-THGEIRDLR  227 (954)
T ss_pred             HHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHhhhcCCcEEEE------cchhhcCCCCEEEEEEECCC-CceEEccHH
Confidence             3332222222 25689999999999999999999999999886      33444555679999999995 589999999


Q ss_pred             HHHHHHHHcCCEEEEe-CCcCCCCCcCCCCCCccEEEecccc-----ccccCCCceeeEEEeechhHHH
Q 024619          160 KIAEMAHAHGALLLVD-NSIMSPVLSRPLELGADIVMHSATK-----FIAGHSDVMAGVLAVKGERLAK  222 (265)
Q Consensus       160 ~i~~~a~~~~~~li~D-~~~~~~~~~~~~~~~~di~~~s~sK-----~~~g~~g~~~G~v~~~~~~~~~  222 (265)
                      +|.++++++|.++++- +..+.+.+..|.++|.||++++...     .|+||.   .|++.++++...+
T Consensus       228 ~i~~~~h~~gal~~~~~d~laL~ll~~Pge~GADI~vG~~Q~fGvp~~~GGP~---ag~~a~~~~~~R~  293 (954)
T PRK12566        228 PLIDQLHGQQALACVAADLLSLLVLTPPGELGADVVLGSTQRFGVPMGYGGPH---AAYFACRDDYKRA  293 (954)
T ss_pred             HHHHHHHHcCCEEEEEeCHHHHhCCCChhhcCCcEEeeCCCcCCCCCCCCCCC---eeeeeehHHHHhh
Confidence            9999999999885533 4456777888999999999987554     676664   5999888765443

>PRK05965 hypothetical protein; Provisional

Probab=99.13  E-value=3e-09  Score=95.78  Aligned_cols=231  Identities=13%  Similarity=0.147  Sum_probs=136.7

Q ss_pred             cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccC--CCCChhHHHHHHHHHhHhC--CCceEEecchHHH
Q 024619            9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYT--RSGNPTRDALESLLAKLDK--ADRALCFTSGMAA   82 (265)
Q Consensus         9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~--~~g~~~~~~l~~~l~~~~g--~~~~i~~~~g~~a   82 (265)
                      .+.++|+|.+  ++..+|...|.+..+..-+...    ..+...  ...++...++.+++.+...  .+.+.+.+||++|
T Consensus        44 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~----~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGSEA  119 (459)
T PRK05965         44 SGHQLLDAFAGLWCVNVGYGQESIVEAAAEQMRE----LPYATGYFHFGSEPAIRLAAKLAERAPGSLNHVYFTLGGSDA  119 (459)
T ss_pred             CCCEEEECcccHHhccCCCCCHHHHHHHHHHHHh----cCCcccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCChhHH
Confidence            3467888853  3556888887777776533322    111111  1134567788889988873  3457777889999


Q ss_pred             HH-HHHHh--c----C-C-CCEEEEcCCCCCChHHHHHhhcC------CCCe---EEEeecC---------CC-------
Q 024619           83 LA-AVTHL--L----G-T-GEEIVAGDDLYGGTDRLLSRVTP------KTGV---VVKRVNT---------CD-------  128 (265)
Q Consensus        83 l~-~~~~~--~----~-~-g~~viv~~~~~~~~~~~~~~~~~------~~g~---~~~~~~~---------~d-------  128 (265)
                      +. ++...  .    . + ..+|+....+|++..........      ..+.   .+..++.         .|       
T Consensus       120 ve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (459)
T PRK05965        120 VDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAA  199 (459)
T ss_pred             HHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCcccccccCCChHHHHHH
Confidence            86 43322  1    1 2 35788888888887532111111      1110   0112221         12       


Q ss_pred             -HHHHHhhcC----CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCc-----CCCCCCccE
Q 024619          129 -LDEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADI  193 (265)
Q Consensus       129 -~~~l~~~~~----~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~-----~~~~~~~di  193 (265)
                       ++++++.+.    +++.+|+++..+...|.+.+    ++++.++|++||+++|.||++. .|-.+     ......+||
T Consensus       200 ~~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDi  279 (459)
T PRK05965        200 SVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLFACEAEGVVPDL  279 (459)
T ss_pred             HHHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchhhhHhhcCCCCCe
Confidence             245666553    46899999998887787643    7999999999999999999974 33332     223446899


Q ss_pred             EEeccccccccCCC-ceeeEEEeechhHHHHHHH-------HHHhccCCCChhHHHHHHhccC
Q 024619          194 VMHSATKFIAGHSD-VMAGVLAVKGERLAKELYF-------LQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       194 ~~~s~sK~~~g~~g-~~~G~v~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      ++  ++|.++|  | +..|.++.+++.. +.+..       +....+..-+|..++..++.|+
T Consensus       280 v~--~gKgl~g--G~~Pi~av~~~~~i~-~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~  337 (459)
T PRK05965        280 MT--VAKGLTS--GYVPMGAVLMSDHVY-QGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLR  337 (459)
T ss_pred             EE--echhhcc--CCcceeEEEEcHHHH-HHHhccccccccccccCCCCCCHHHHHHHHHHHH
Confidence            96  5999854  4 3578887776543 32221       1122233445666655444444

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=99.13  E-value=3.8e-10  Score=98.61  Aligned_cols=164  Identities=15%  Similarity=0.112  Sum_probs=114.2

Q ss_pred             CChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHhcC-CCCEEEEcCC----CCCChHHHHHhhcCCCCeEEEeec-
Q 024619           53 GNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLG-TGEEIVAGDD----LYGGTDRLLSRVTPKTGVVVKRVN-  125 (265)
Q Consensus        53 g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~~~-~g~~viv~~~----~~~~~~~~~~~~~~~~g~~~~~~~-  125 (265)
                      |.|...+|++.+++++|.+..+.+.+|..+-. ++..+++ +|+++++..+    .+..+.......+...|+.++.++ 
T Consensus        72 gdpSv~~Lee~vael~G~E~alpthqGRgaE~Il~~~~~~~~g~e~g~~~~~~~v~hn~~fett~g~a~l~G~~~~~l~~  151 (467)
T TIGR02617        72 GSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTARNVYT  151 (467)
T ss_pred             cCchHHHHHHHHHHHhCCceEEECCCCchHHHHHHHhhcccccccccccccccccceEEEEecchHHHHHcCceeecccc
Confidence            44889999999999999999999999987764 6677777 6887775553    222222211234566777766642 


Q ss_pred             --------------CCCHHHHHhhcCC----CceEEEEecCCCCc-ccccc---HHHHHHHHHHcCCEEEEeCCcCC---
Q 024619          126 --------------TCDLDEVASAIGP----WTKLVWVESPTNPR-QQICD---IRKIAEMAHAHGALLLVDNSIMS---  180 (265)
Q Consensus       126 --------------~~d~~~l~~~~~~----~~~~i~~~~~~np~-G~~~~---l~~i~~~a~~~~~~li~D~~~~~---  180 (265)
                                    ..|++++++++++    +...+...-.+|.. |+..+   ++++.++|++||+.++.|.+--.   
T Consensus       152 ~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA  231 (467)
T TIGR02617       152 KEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENA  231 (467)
T ss_pred             hhhcccccCCCCCCCcCHHHHHHHHhhcCCCCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHh
Confidence                          1289999999873    34455444445544 45544   68999999999999999987421   


Q ss_pred             --------CCCcCCC-------CCCccEEEeccccccccCCCceeeEEEeechh
Q 024619          181 --------PVLSRPL-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGER  219 (265)
Q Consensus       181 --------~~~~~~~-------~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~  219 (265)
                              +....+.       ....|.+..|++|.+++|-   +|+++++++.
T Consensus       232 ~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKglgApv---Gg~Lag~d~~  282 (467)
T TIGR02617       232 YFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDAMVPM---GGLLCFKDDS  282 (467)
T ss_pred             hhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCCCCcc---cceEEecchh
Confidence                    1111111       1358999999999998774   6899999883

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.12  E-value=2.6e-09  Score=95.96  Aligned_cols=205  Identities=13%  Similarity=0.092  Sum_probs=126.6

Q ss_pred             cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCC--ceEEecchHHHHH
Q 024619            9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD--RALCFTSGMAALA   84 (265)
Q Consensus         9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~--~~i~~~~g~~al~   84 (265)
                      .+.++|+|.++  +..+|...|.+..+..-+....   .........++...++.+++.+..+..  .+.+++||++|+.
T Consensus        52 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~---~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGseAve  128 (453)
T PRK06943         52 DGRRYLDAISSWWVNLFGHANPRINAALKDQLDTL---EHAMLAGCTHEPAIELAERLAALTGGTLGHAFFASDGASAVE  128 (453)
T ss_pred             CCCEEEEcchHHHHhcCCCCCHHHHHHHHHHHHhc---CCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCCHHHHH
Confidence            35678888643  5568988888887764332221   111111123466778889998887643  5788889999986


Q ss_pred             HHHHhc--------CC-CCEEEEcCCCCCChHHHHHhhcCCC------C---eEEEeecCC-----------------CH
Q 024619           85 AVTHLL--------GT-GEEIVAGDDLYGGTDRLLSRVTPKT------G---VVVKRVNTC-----------------DL  129 (265)
Q Consensus        85 ~~~~~~--------~~-g~~viv~~~~~~~~~~~~~~~~~~~------g---~~~~~~~~~-----------------d~  129 (265)
                      ..+.+.        .+ ..+|+....+|++.......+....      +   ..+..++.+                 ++
T Consensus       129 ~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  208 (453)
T PRK06943        129 IALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAADVAARAL  208 (453)
T ss_pred             HHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCccccccCCCHHHHHHHHH
Confidence            333332        12 3678888888888642211111100      0   011112211                 23


Q ss_pred             HHHHhhcC---CCceEEEEec-CCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCc-----CCCCCCccEEE
Q 024619          130 DEVASAIG---PWTKLVWVES-PTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADIVM  195 (265)
Q Consensus       130 ~~l~~~~~---~~~~~i~~~~-~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~-----~~~~~~~di~~  195 (265)
                      +++++.+.   +++.+|+++. .+...|.+.+    ++++.++|++||+++|.||++. .|..+     ......+|+++
T Consensus       209 ~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~fa~~~~gv~PDivt  288 (453)
T PRK06943        209 ADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFFACEQAGVWPDFLC  288 (453)
T ss_pred             HHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcchhHHHhCCCCCCeEe
Confidence            56666663   5789999998 4776777643    7999999999999999999974 44433     22344689986


Q ss_pred             eccccccccCCC-ceeeEEEeechhH
Q 024619          196 HSATKFIAGHSD-VMAGVLAVKGERL  220 (265)
Q Consensus       196 ~s~sK~~~g~~g-~~~G~v~~~~~~~  220 (265)
                      .  +|.++|  | +..|.++.+++..
T Consensus       289 ~--gKgl~g--G~~Pi~av~~~~ei~  310 (453)
T PRK06943        289 L--SKGISG--GYLPLSLVLSRDAIF  310 (453)
T ss_pred             e--ehhhcc--CcccceEEEEcHHHH
Confidence            4  999854  4 3578777776543

>PRK07482 hypothetical protein; Provisional

Probab=99.12  E-value=2.1e-09  Score=96.78  Aligned_cols=205  Identities=14%  Similarity=0.062  Sum_probs=126.0

Q ss_pred             cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCC-ccCCCCChhHHHHHHHHHhHhC--CCceEEecchHHHH
Q 024619            9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPY-DYTRSGNPTRDALESLLAKLDK--ADRALCFTSGMAAL   83 (265)
Q Consensus         9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~y~~~g~~~~~~l~~~l~~~~g--~~~~i~~~~g~~al   83 (265)
                      .+.++|+|.+  ++..+|...|.+.++..-+....   ..+ .+....++...++.+.+.+...  .+.+.+.+||++|+
T Consensus        48 dG~~ylD~~sg~~~~~lGh~~p~v~~Av~~q~~~~---~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGSEAv  124 (461)
T PRK07482         48 QGRRYIDAFAGLYCVNVGYGRTEVAEAIAEQAKEL---AYYHTYVGHGTEASITLSKRIIDRAPAGMSKVYYGLSGSDAN  124 (461)
T ss_pred             CCCEEEEcccchhhhcCCCCCHHHHHHHHHHHHhc---CccccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHH
Confidence            4567888864  34568988888887765433221   111 1111234668888999988874  34677889999998


Q ss_pred             HHHHHhc-------C-C-CCEEEEcCCCCCChHHHHHhhcC------CCC---eEEEeecCC------------------
Q 024619           84 AAVTHLL-------G-T-GEEIVAGDDLYGGTDRLLSRVTP------KTG---VVVKRVNTC------------------  127 (265)
Q Consensus        84 ~~~~~~~-------~-~-g~~viv~~~~~~~~~~~~~~~~~------~~g---~~~~~~~~~------------------  127 (265)
                      .+.+.+.       . + ..+|+....+|++.......+..      ..+   ..+..++.+                  
T Consensus       125 e~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  204 (461)
T PRK07482        125 ETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSAY  204 (461)
T ss_pred             HHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCccccccccCCCHHHHHHH
Confidence            6333322       1 2 35788888888886432111110      001   011111111                  


Q ss_pred             CHHHHHhhcC----CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCc-----CCCCCCccE
Q 024619          128 DLDEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADI  193 (265)
Q Consensus       128 d~~~l~~~~~----~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~-----~~~~~~~di  193 (265)
                      +++.+++.+.    +++.+|+++......|.+.+    +++|.++|++||+++|.||++. .|-.+     ......+|+
T Consensus       205 ~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~~~~gv~PDi  284 (461)
T PRK07482        205 CADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHYGIEPDL  284 (461)
T ss_pred             HHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcchhhHHhcCCCCCE
Confidence            2456666652    46899999998877777743    7999999999999999999974 33332     223446899


Q ss_pred             EEeccccccccCCCceeeEEEeechh
Q 024619          194 VMHSATKFIAGHSDVMAGVLAVKGER  219 (265)
Q Consensus       194 ~~~s~sK~~~g~~g~~~G~v~~~~~~  219 (265)
                      ++  ++|.++|. -+..|.++.+++.
T Consensus       285 v~--~gKgl~gG-~~Pi~av~~~~~i  307 (461)
T PRK07482        285 IT--VAKGLTSA-YAPLSGSIVGEKV  307 (461)
T ss_pred             EE--EccccccC-ccccceeeecHHH
Confidence            96  59998542 1235666666643

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.12  E-value=2.1e-09  Score=95.96  Aligned_cols=232  Identities=13%  Similarity=0.085  Sum_probs=133.6

Q ss_pred             cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhC--CCceEEecchHHHHH
Q 024619            9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK--ADRALCFTSGMAALA   84 (265)
Q Consensus         9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g--~~~~i~~~~g~~al~   84 (265)
                      .+.++++|.+  ++..+|...|.+..+..-+....   .........++...++.+.+.+...  .+.+.+.+||++|+.
T Consensus        42 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~---~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve  118 (429)
T PRK06173         42 DGRRLIDGMSSWWAALHGYNHPRLNAAATNQLAKM---SHIMFGGFTHEPAVELAQKLLEILPPSLNKIFFADSGSVAVE  118 (429)
T ss_pred             CCCEEEEccchHHhccCCCCCHHHHHHHHHHHHhc---CCccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCCchHHHH
Confidence            3567888853  35568888877777654332211   1111111134567788888888763  356888899999986


Q ss_pred             HHHHh---c-----CC-CCEEEEcCCCCCChHHHHHhhcCC-------CC---eEEEeecCC-----------CHHHHHh
Q 024619           85 AVTHL---L-----GT-GEEIVAGDDLYGGTDRLLSRVTPK-------TG---VVVKRVNTC-----------DLDEVAS  134 (265)
Q Consensus        85 ~~~~~---~-----~~-g~~viv~~~~~~~~~~~~~~~~~~-------~g---~~~~~~~~~-----------d~~~l~~  134 (265)
                      +.+.+   .     ++ ..+|+....+|++...........       ++   ..+..++.+           +++.+++
T Consensus       119 ~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~l~~  198 (429)
T PRK06173        119 VAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSIKFGEEWNDEAIEPLQD  198 (429)
T ss_pred             HHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCCcccchhHHHHHHHHHHH
Confidence            33332   1     13 357888888888853211111000       00   011222211           2455566


Q ss_pred             hcC---CCceEEEEecC-CCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCCC--CcC-----CCCCCccEEEeccc
Q 024619          135 AIG---PWTKLVWVESP-TNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPV--LSR-----PLELGADIVMHSAT  199 (265)
Q Consensus       135 ~~~---~~~~~i~~~~~-~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~~~~--~~~-----~~~~~~di~~~s~s  199 (265)
                      .+.   +++.+|+++.. +.-.|.+.+    ++++.++|++||+++|+||++ .|.  .+.     .....+||++  ++
T Consensus       199 ~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~-tG~GrtG~~~a~~~~gv~PDiv~--~g  275 (429)
T PRK06173        199 LLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIA-TGFGRTGKLFALEHAGVVPDIMC--IG  275 (429)
T ss_pred             HHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchh-cCCCcCCcchHHHhcCCCCCEEE--ee
Confidence            653   56899999985 776676632    799999999999999999998 442  221     1233578886  79


Q ss_pred             cccccCCCc-eeeEEEeechhHHHHHHH-----HHHhccCCCChhHHHHHHhccCc
Q 024619          200 KFIAGHSDV-MAGVLAVKGERLAKELYF-----LQNAEGSGLAPFDCWICLRGVKT  249 (265)
Q Consensus       200 K~~~g~~g~-~~G~v~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~  249 (265)
                      |.++|  |+ .++.++.+++ +.+.+..     +....+...+|..++..++.|+.
T Consensus       276 K~l~g--G~~p~~a~~~~~~-i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~  328 (429)
T PRK06173        276 KALTG--GYLTLSATITTEA-IAQTICSGEAKCFMHGPTFMANPLACAIAAESIRL  328 (429)
T ss_pred             hhhhC--CccccceEEecHH-HHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHH
Confidence            99853  43 4666766664 3333221     11222334556666655555443

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.11  E-value=3.1e-09  Score=95.74  Aligned_cols=231  Identities=13%  Similarity=0.054  Sum_probs=135.3

Q ss_pred             cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCC-----ceEEe-cchH
Q 024619            9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD-----RALCF-TSGM   80 (265)
Q Consensus         9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~-----~~i~~-~~g~   80 (265)
                      .+.++++|.++  +..+|...|.+..+..-+...   ...+......++...++.+.+.+....+     ...++ +||+
T Consensus        61 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~---~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~~~~v~f~~~SGS  137 (464)
T PRK06938         61 EGRQFIDCLAGAGTLALGHNHPVVIEAIQQVLAD---ELPLHTLDLTTPVKDQFVQDLFASLPEAFAREAKIQFCGPTGT  137 (464)
T ss_pred             CCCEEEEccCCccccccCCCCHHHHHHHHHHHHh---hhcccccccCCHHHHHHHHHHHHhCcccccccceEEEeCCCcH
Confidence            45688888533  455898888877775533221   1111111124466777888888775322     34455 6999


Q ss_pred             HHHHHHHHh---cCCCCEEEEcCCCCCChHHHHHhhcCC------CC---eEEEeecCC-----------------CHHH
Q 024619           81 AALAAVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTPK------TG---VVVKRVNTC-----------------DLDE  131 (265)
Q Consensus        81 ~al~~~~~~---~~~g~~viv~~~~~~~~~~~~~~~~~~------~g---~~~~~~~~~-----------------d~~~  131 (265)
                      +|....+.+   .....+|+....+|++...........      ++   ..+..++.+                 +.+.
T Consensus       138 EAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  217 (464)
T PRK06938        138 DAVEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHY  217 (464)
T ss_pred             HHHHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCccccccccCchhhHHHHHHHH
Confidence            998643333   223467888888888875432221110      00   012233321                 1455


Q ss_pred             HHhhcC------CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCc-----CCCCCCccEEE
Q 024619          132 VASAIG------PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADIVM  195 (265)
Q Consensus       132 l~~~~~------~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~-----~~~~~~~di~~  195 (265)
                      +++.+.      +++.+|+++....-.|.+.+    ++++.++|++||+++|.||++. .|..+     ......+|+++
T Consensus       218 l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~e~~gv~PDiv~  297 (464)
T PRK06938        218 LENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPDVVV  297 (464)
T ss_pred             HHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHHHHHhcCCCCCEEE
Confidence            666654      25889999988776677643    7999999999999999999974 33332     22344689986


Q ss_pred             eccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619          196 HSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       196 ~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      .  +|.++|  |+..|.++.+++ + +.+.......+..-++..++..++.|+
T Consensus       298 ~--gKglgg--G~PlsAv~~~~~-~-~~~~~~~~~~T~~gnpla~Aaa~a~L~  344 (464)
T PRK06938        298 L--SKAIGG--SLPLAVVVYREW-L-DTWQPGAHAGTFRGNQMAMAAGSATLR  344 (464)
T ss_pred             e--eccccC--CCceEEEeehhH-h-hccCCCCCCCCCCcCHHHHHHHHHHHH
Confidence            4  999853  477888887764 3 222111112233344555555555444

>PRK07481 hypothetical protein; Provisional

Probab=99.11  E-value=4.7e-09  Score=94.30  Aligned_cols=205  Identities=16%  Similarity=0.104  Sum_probs=124.1

Q ss_pred             cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccC-CCCChhHHHHHHHHHhHhC---CCceEEecchHHH
Q 024619            9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYT-RSGNPTRDALESLLAKLDK---ADRALCFTSGMAA   82 (265)
Q Consensus         9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~-~~g~~~~~~l~~~l~~~~g---~~~~i~~~~g~~a   82 (265)
                      .+.++++|.+  ++..+|...|.+..+..-+....   ...... ...++...++.+++.++++   .+.+.+.+||++|
T Consensus        40 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~---~~~~~~~~~~~~~~~~lae~L~~~~~~~~~~~v~f~~sGsEA  116 (449)
T PRK07481         40 DGKKLLDGVGGLWNVNVGHNREEVKEAIVRQLDEL---EYYSTFDGTTHPRAIELSYELIDMFAPEGMRRVFFSSGGSDS  116 (449)
T ss_pred             CCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhc---cceecccccCCHHHHHHHHHHHHhcCCCCCCEEEEcCchHHH
Confidence            3567888853  34569998888877654332221   111111 1134678889999998873   3457788889999


Q ss_pred             HHHHHHh---c-----CC-CCEEEEcCCCCCChHHHHHhhcCC-----------CCeEEEeec------CC--CHHHH--
Q 024619           83 LAAVTHL---L-----GT-GEEIVAGDDLYGGTDRLLSRVTPK-----------TGVVVKRVN------TC--DLDEV--  132 (265)
Q Consensus        83 l~~~~~~---~-----~~-g~~viv~~~~~~~~~~~~~~~~~~-----------~g~~~~~~~------~~--d~~~l--  132 (265)
                      +.+.+.+   .     ++ ..+|+....+|++.......+...           .|......+      ..  |.+.+  
T Consensus       117 ve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~  196 (449)
T PRK07481        117 VETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPEELAR  196 (449)
T ss_pred             HHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCcccccccCCCCHHHHHH
Confidence            8633332   1     12 357888888888865321111110           111111111      11  33333  


Q ss_pred             ------Hhhc----CCCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCc-----CCCCCCcc
Q 024619          133 ------ASAI----GPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGAD  192 (265)
Q Consensus       133 ------~~~~----~~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~-----~~~~~~~d  192 (265)
                            ++.+    .+++.+|+++..+...|.+.+    ++++.++|++||+++|.||++. .|..+     ......+|
T Consensus       197 ~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PD  276 (449)
T PRK07481        197 ICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWFGSRGWGVKPD  276 (449)
T ss_pred             HHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCchhhHhhhcCCCCC
Confidence                  3323    256899999998887787754    8999999999999999999974 33332     22344588


Q ss_pred             EEEeccccccccCCCceeeEEEeechh
Q 024619          193 IVMHSATKFIAGHSDVMAGVLAVKGER  219 (265)
Q Consensus       193 i~~~s~sK~~~g~~g~~~G~v~~~~~~  219 (265)
                      +++  ++|.+++ +-+..|.++.+++.
T Consensus       277 iv~--~gKgl~g-G~~Pi~av~~~~~i  300 (449)
T PRK07481        277 IMC--LAKGITS-GYVPLGATMVNARI  300 (449)
T ss_pred             EEE--EeecccC-CCcCceEEEEcHHH
Confidence            875  5999854 21346777777653

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.10  E-value=5.4e-09  Score=94.24  Aligned_cols=203  Identities=12%  Similarity=0.090  Sum_probs=124.1

Q ss_pred             ceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccC-CCCChhHHHHHHHHHhHhC--CCceEEecchHHHHH
Q 024619           10 STLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYT-RSGNPTRDALESLLAKLDK--ADRALCFTSGMAALA   84 (265)
Q Consensus        10 ~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~-~~g~~~~~~l~~~l~~~~g--~~~~i~~~~g~~al~   84 (265)
                      +.++++|.++  +..+|...|.+..+..-+...    ..+... ...++...++.+.+.++..  .+.+.+.+||++|..
T Consensus        46 G~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~----l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve  121 (466)
T PRK07030         46 GKRYLDAVSSWWVNVFGHANPRINQRIKDQVDQ----LEHVILAGFSHEPVIELSERLVKITPPGLSRCFYADNGSSAIE  121 (466)
T ss_pred             CCEEEEcchhHHhhcCCCCCHHHHHHHHHHHHh----cCCccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHH
Confidence            4678888543  445888888777765432222    111111 1134567888888888763  346788889999986


Q ss_pred             HHHHhc-------C-C-CCEEEEcCCCCCChHHHHHhhcCC------CC---eEEEeecCC-----------------CH
Q 024619           85 AVTHLL-------G-T-GEEIVAGDDLYGGTDRLLSRVTPK------TG---VVVKRVNTC-----------------DL  129 (265)
Q Consensus        85 ~~~~~~-------~-~-g~~viv~~~~~~~~~~~~~~~~~~------~g---~~~~~~~~~-----------------d~  129 (265)
                      ..+.+.       . + +.+|+....+|++.......+...      ++   ..+..+|.+                 ++
T Consensus       122 ~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l  201 (466)
T PRK07030        122 VALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMF  201 (466)
T ss_pred             HHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCccccccCCCHHHHHHHHH
Confidence            333321       1 2 357888888888765332111111      00   011222211                 13


Q ss_pred             HHHHhhcC---CCceEEEEec-CCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCc-----CCCCCCccEEE
Q 024619          130 DEVASAIG---PWTKLVWVES-PTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADIVM  195 (265)
Q Consensus       130 ~~l~~~~~---~~~~~i~~~~-~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~-----~~~~~~~di~~  195 (265)
                      +.+++.+.   +++.+|+++. .+.-.|.+.+    ++++.++|++||+++|.||++. .|..+     ......+|+++
T Consensus       202 ~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~a~~~~gv~PDiv~  281 (466)
T PRK07030        202 AHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMFACEQAGIRPDFLC  281 (466)
T ss_pred             HHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccchHHHhcCCCCCEEe
Confidence            44555553   5788999998 5666677643    7999999999999999999974 33332     23344689986


Q ss_pred             eccccccccCCC-ceeeEEEeechhH
Q 024619          196 HSATKFIAGHSD-VMAGVLAVKGERL  220 (265)
Q Consensus       196 ~s~sK~~~g~~g-~~~G~v~~~~~~~  220 (265)
                      .  +|.++|  | +..|.++.+++..
T Consensus       282 ~--gKgl~g--G~~Pi~av~~~~ei~  303 (466)
T PRK07030        282 L--SKALTG--GYLPLAAVLTTDTVY  303 (466)
T ss_pred             e--ehhccC--CcccceEEEecHHHH
Confidence            5  999854  4 3578787776543

>PRK06148 hypothetical protein; Provisional

Probab=99.09  E-value=2.3e-09  Score=104.74  Aligned_cols=230  Identities=20%  Similarity=0.139  Sum_probs=138.1

Q ss_pred             cceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCC--CceEEecchHHHHHHH
Q 024619            9 VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA--DRALCFTSGMAALAAV   86 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~--~~~i~~~~g~~al~~~   86 (265)
                      .+.++++|.++...+|...|.+..+..-+....  +   ..+...++...++.+++.+.+..  +.+.+++||++|..+.
T Consensus       622 dG~~ylD~~~g~~~lGH~hp~v~~Ai~~q~~~l--~---~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~nSGsEA~e~A  696 (1013)
T PRK06148        622 RGRAYLDCFNNVCHVGHAHPRVVAAAARQAARL--N---TNTRYLHDAIVAYAERLTATLPDGLTVAFFVNSGSEANSLA  696 (1013)
T ss_pred             CCCEEEEcccChhhcCCCCHHHHHHHHHHHhhc--C---CcCCcCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHH
Confidence            457888987555568988877777765333221  0   11122456788889999888743  4578889999998643


Q ss_pred             HHh---cCCCCEEEEcCCCCCChHHHHHhhc-----CCCC----eEEEee--------cCC--C-------HHHHHhhcC
Q 024619           87 THL---LGTGEEIVAGDDLYGGTDRLLSRVT-----PKTG----VVVKRV--------NTC--D-------LDEVASAIG  137 (265)
Q Consensus        87 ~~~---~~~g~~viv~~~~~~~~~~~~~~~~-----~~~g----~~~~~~--------~~~--d-------~~~l~~~~~  137 (265)
                      +.+   ...+.+|+....+|++.........     +..+    ..+..+        +..  +       .+.+++.+.
T Consensus       697 lklAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~  776 (1013)
T PRK06148        697 LRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIA  776 (1013)
T ss_pred             HHHHHHhcCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHH
Confidence            333   2334678888888887753211110     0001    011111        111  1       123433332


Q ss_pred             ------CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCc-CCCCCcC------CCCCCccEEEecccc
Q 024619          138 ------PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSI-MSPVLSR------PLELGADIVMHSATK  200 (265)
Q Consensus       138 ------~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~-~~~~~~~------~~~~~~di~~~s~sK  200 (265)
                            .++++|+++......|.+.+    ++++.++|++||+++|.||++ +.|..+.      .....+||++  ++|
T Consensus       777 ~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PDivt--~gK  854 (1013)
T PRK06148        777 AMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVT--MGK  854 (1013)
T ss_pred             hhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCCcceee--ecc
Confidence                  46889999998887787765    899999999999999999998 3444432      1234678875  599


Q ss_pred             ccccCCCceeeEEEeechhHHHHHHHH-HHhccCCCChhHHHHHHhccC
Q 024619          201 FIAGHSDVMAGVLAVKGERLAKELYFL-QNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       201 ~~~g~~g~~~G~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      .+++  |+..|.++++++. .+.+... ....+..-++..+...++.|+
T Consensus       855 ~lgg--G~Plgav~~~~ei-~~~~~~g~~~~~Tf~gnpla~aaa~a~L~  900 (1013)
T PRK06148        855 PIGN--GHPMGAVVTTREI-ADSFDNGMEYFNTFGGNPVSCAIGLAVLD  900 (1013)
T ss_pred             cccC--CcceEEEEEcHHH-HhhccCCCccccCCCCCHHHHHHHHHHHH
Confidence            9954  4678888887644 3322211 112333445666665544444

>PRK07036 hypothetical protein; Provisional

Probab=99.06  E-value=1.2e-08  Score=92.02  Aligned_cols=206  Identities=16%  Similarity=0.162  Sum_probs=123.1

Q ss_pred             cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhC--CCceEEecchHHHHH
Q 024619            9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK--ADRALCFTSGMAALA   84 (265)
Q Consensus         9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g--~~~~i~~~~g~~al~   84 (265)
                      .+.++++|.++  +..+|...|.+..+..-+......  ...+....++...++.+++.+...  .+.+.+.+||++|+.
T Consensus        49 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~--~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve  126 (466)
T PRK07036         49 DGRRYLDGIGGMWCVNVGYGREEMADAIADQARRLPY--YTPFGDMTNAPAAELAAKLAELAPGDLNHVFLTTGGSTAVD  126 (466)
T ss_pred             CCCEEEECcccHHhhcCCCCCHHHHHHHHHHHHhCcc--cccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHH
Confidence            34678888532  345888887777665432221100  011111234567888888888764  346778888999986


Q ss_pred             HHHHhc-------C-C-CCEEEEcCCCCCChHHHHHhhcCCCC---------eEEEeecCCC-----------------H
Q 024619           85 AVTHLL-------G-T-GEEIVAGDDLYGGTDRLLSRVTPKTG---------VVVKRVNTCD-----------------L  129 (265)
Q Consensus        85 ~~~~~~-------~-~-g~~viv~~~~~~~~~~~~~~~~~~~g---------~~~~~~~~~d-----------------~  129 (265)
                      ..+.+.       . + ..+|+....+|++.............         ..+..++.++                 .
T Consensus       127 ~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  206 (466)
T PRK07036        127 SALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMSEAAFCDFLV  206 (466)
T ss_pred             HHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCcccccccCCChHHHHHHHH
Confidence            333321       1 2 35788888888886533211111100         0122222111                 1


Q ss_pred             HHHHhhc----CCCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCc-CCCCCcC------CCCCCccEE
Q 024619          130 DEVASAI----GPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSI-MSPVLSR------PLELGADIV  194 (265)
Q Consensus       130 ~~l~~~~----~~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~-~~~~~~~------~~~~~~di~  194 (265)
                      +.+++.+    .+++.+|+++......|.+.+    ++++.++|++||+++|+||++ +.|..+.      .....+||+
T Consensus       207 ~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~~gv~PDiv  286 (466)
T PRK07036        207 DEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFFASEAVFGIQPDII  286 (466)
T ss_pred             HHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCchhhhhhhhcCCCCCEE
Confidence            2333333    256889999999887888765    899999999999999999998 3444331      224467887


Q ss_pred             EeccccccccCCC-ceeeEEEeechhH
Q 024619          195 MHSATKFIAGHSD-VMAGVLAVKGERL  220 (265)
Q Consensus       195 ~~s~sK~~~g~~g-~~~G~v~~~~~~~  220 (265)
                      +  ++|.+++  | +..|.++.+++..
T Consensus       287 t--~gK~l~g--G~~Pi~av~~~~~i~  309 (466)
T PRK07036        287 T--FAKGLTS--GYQPLGAVIISERLL  309 (466)
T ss_pred             E--Ecccccc--CccccEEEEEcHHHH
Confidence            4  6999854  3 2467777766443

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.06  E-value=4.2e-09  Score=94.88  Aligned_cols=205  Identities=12%  Similarity=0.083  Sum_probs=124.8

Q ss_pred             cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccC-CCCChhHHHHHHHHHhHhCC--CceEEecchHHHH
Q 024619            9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYT-RSGNPTRDALESLLAKLDKA--DRALCFTSGMAAL   83 (265)
Q Consensus         9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~-~~g~~~~~~l~~~l~~~~g~--~~~i~~~~g~~al   83 (265)
                      .+.++|+|.++  +..+|...|.+..+...+....    .+... ...++...++.+.|.++...  +.+.+.+||++|+
T Consensus        54 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l----~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseAv  129 (460)
T PRK06916         54 NGNEYYDGVSSIWLNVHGHQVPELDEAIREQLNKI----AHSTLLGLANVPSILLAEKLIEVVPEGLKKVFYSDSGATAV  129 (460)
T ss_pred             CCCEEEEcchhHHHhhcCCCCHHHHHHHHHHHHhC----CCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHH
Confidence            35678888532  4458888888877765333221    11111 11346678888999888743  4688888999998


Q ss_pred             HHHHHh-c-------CC-CCEEEEcCCCCCChHHHHHhhcCCC------C---eEEEeecCC-----------------C
Q 024619           84 AAVTHL-L-------GT-GEEIVAGDDLYGGTDRLLSRVTPKT------G---VVVKRVNTC-----------------D  128 (265)
Q Consensus        84 ~~~~~~-~-------~~-g~~viv~~~~~~~~~~~~~~~~~~~------g---~~~~~~~~~-----------------d  128 (265)
                      .+.+.+ .       .+ ..+|+....+|++.......+....      +   ..+..++.+                 +
T Consensus       130 e~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~  209 (460)
T PRK06916        130 EIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKH  209 (460)
T ss_pred             HHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCcccccccCCChHHHHHHH
Confidence            633332 1       23 3678888888888653321111100      0   011122111                 2


Q ss_pred             HHHHHhhcC---CCceEEEEec-CCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCc-----CCCCCCccEE
Q 024619          129 LDEVASAIG---PWTKLVWVES-PTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADIV  194 (265)
Q Consensus       129 ~~~l~~~~~---~~~~~i~~~~-~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~-----~~~~~~~di~  194 (265)
                      ++.+++.+.   +++.+|+++. +..-.|.+.+    ++++.++|+++|+++|.||++. .|..+     ......+|++
T Consensus       210 ~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~~a~~~~gv~PDiv  289 (460)
T PRK06916        210 LEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMFACEHENVTPDIM  289 (460)
T ss_pred             HHHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCchhhHHHhcCCCCCee
Confidence            344555553   5789999998 5776777642    7999999999999999999973 33332     1223457887


Q ss_pred             EeccccccccCCCceeeEEEeechhH
Q 024619          195 MHSATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       195 ~~s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                      +  ++|.++| +-+..|.++.+++..
T Consensus       290 ~--~gK~l~g-G~~Pi~av~~~~ei~  312 (460)
T PRK06916        290 T--AGKGLTG-GYLPIAITVTTDEIY  312 (460)
T ss_pred             e--eehhhhc-CccccceeeecHHHH
Confidence            4  6998853 213578787776543

>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]

Probab=99.06  E-value=3.4e-09  Score=86.93  Aligned_cols=165  Identities=27%  Similarity=0.367  Sum_probs=122.5

Q ss_pred             HHHHHHHHHhHhCCCceE---EecchHHHHH-HHHHhcCCCCEEEE-cCCCCCChHHHH------HhhcCCCCeEEEeec
Q 024619           57 RDALESLLAKLDKADRAL---CFTSGMAALA-AVTHLLGTGEEIVA-GDDLYGGTDRLL------SRVTPKTGVVVKRVN  125 (265)
Q Consensus        57 ~~~l~~~l~~~~g~~~~i---~~~~g~~al~-~~~~~~~~g~~viv-~~~~~~~~~~~~------~~~~~~~g~~~~~~~  125 (265)
                      |+.|++-.++.+|++..+   -+-||+.|+. ++..+++|||+++. ..--|....+..      ...++.+|++..-++
T Consensus        67 RdtLe~vyA~vf~aE~a~VRpq~isGTHAI~~aLfg~LRpgDell~i~G~PYDTLeevIG~rg~~~gSL~dfgi~Y~~v~  146 (416)
T COG4100          67 RDTLERVYAQVFGAEAALVRPQIISGTHAIACALFGILRPGDELLYITGSPYDTLEEVIGLRGEGQGSLKDFGIKYKAVP  146 (416)
T ss_pred             hhHHHHHHHHHhccccceeeeeeecchhHHHHHHHhccCCCCeEEEecCCcchhHHHHhccCCCCcccHHHhCcceeecc
Confidence            888889999999999644   4668999996 78899999999874 333343333221      122345677777777


Q ss_pred             CC-----CHHHHHhhcCCCceEEEEecC----CCCccccccHHHHHHHHHHc--CCEEEEeCCcCCCCC-cCCCCCCccE
Q 024619          126 TC-----DLDEVASAIGPWTKLVWVESP----TNPRQQICDIRKIAEMAHAH--GALLLVDNSIMSPVL-SRPLELGADI  193 (265)
Q Consensus       126 ~~-----d~~~l~~~~~~~~~~i~~~~~----~np~G~~~~l~~i~~~a~~~--~~~li~D~~~~~~~~-~~~~~~~~di  193 (265)
                      +.     |.+.++.++++++++|.+-..    .-|+=.+.++++++...|+.  |+++++|.+|+...- ..|...+.|+
T Consensus       147 Lt~~gkiD~~~v~~~i~~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGEFvE~~EPt~vGaDl  226 (416)
T COG4100         147 LTADGKIDIQAVKTAISDRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGEFVEEKEPTHVGADL  226 (416)
T ss_pred             cccCCcccHHHHHHhcCccceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccchhhhhccCccccchhh
Confidence            54     889999999999999987432    12444456788888888885  789999999987654 4688889999


Q ss_pred             EEeccccccccCCCceeeEEEeechhHH
Q 024619          194 VMHSATKFIAGHSDVMAGVLAVKGERLA  221 (265)
Q Consensus       194 ~~~s~sK~~~g~~g~~~G~v~~~~~~~~  221 (265)
                      +-+|+-|.-+|.---.+|++.++.+.+.
T Consensus       227 iAGSLIKNpGGgiaktGGYiaGk~~~ve  254 (416)
T COG4100         227 IAGSLIKNPGGGIAKTGGYIAGKAELVE  254 (416)
T ss_pred             hccceeeCCCCceeeccceeechHHHHH
Confidence            9999999775543334789988876554

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=99.06  E-value=1.3e-09  Score=97.57  Aligned_cols=200  Identities=16%  Similarity=0.155  Sum_probs=119.0

Q ss_pred             cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhC-CCceEEecchHHHHHH
Q 024619            9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK-ADRALCFTSGMAALAA   85 (265)
Q Consensus         9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g-~~~~i~~~~g~~al~~   85 (265)
                      .+.++|+|.+  ++..+|...|.+.++..-+....    . .++ .......++.+.+.++.. .+.+.+.+||++|...
T Consensus        46 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~----~-~~~-~~~~~~~~la~~l~~~~p~~~~v~f~~sGseA~e~  119 (431)
T PRK06209         46 DGNEYIEYGMGLRAVGLGHAYPPVVEAVREALQDG----C-NFT-RPSAIELDAAESFLELIDGADMVKFCKNGSDATSA  119 (431)
T ss_pred             CCCEEEEccccccchhcCCCCHHHHHHHHHHHHhC----c-CCC-CCCHHHHHHHHHHHHhCCccceEEEecCHHHHHHH
Confidence            4567888853  33559999888887765333321    1 122 112334567888888763 4568888999999863


Q ss_pred             HHHh---cCCCCEEEEc-CCCCCChHHHHH-hhcCCCCe------EEEeecCCCHHHHHhhcC---CCceEEEEecCCCC
Q 024619           86 VTHL---LGTGEEIVAG-DDLYGGTDRLLS-RVTPKTGV------VVKRVNTCDLDEVASAIG---PWTKLVWVESPTNP  151 (265)
Q Consensus        86 ~~~~---~~~g~~viv~-~~~~~~~~~~~~-~~~~~~g~------~~~~~~~~d~~~l~~~~~---~~~~~i~~~~~~np  151 (265)
                      .+.+   ......|+.. ...|++...... ......+.      .+..++..|++++++.+.   .++++|+++.....
T Consensus       120 AlklAr~~tgr~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~aavi~Epv~g~  199 (431)
T PRK06209        120 AVRLARAYTGRDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSALTVTFRYNDIASLEALFEDHPGRIACVILEPATAD  199 (431)
T ss_pred             HHHHHHHHhCCCeEEEeccCccccccccccccCCCCCCCChhHhccccccCCCCHHHHHHHHHhCCCCEEEEEEccccCC
Confidence            3332   2223445543 233332110000 00001111      133445568888888774   35778898877654


Q ss_pred             ccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcC------CCCCCccEEEeccccccccCCCceeeEEEeechh
Q 024619          152 RQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGER  219 (265)
Q Consensus       152 ~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~------~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~  219 (265)
                      .+....+++|.++|++||+++|+||++ .|....      .....+|+  .+++|.+++  |+.+|+++.+++.
T Consensus       200 ~~~~~~l~~l~~lc~~~g~lLI~DEv~-tG~~~~~~g~~~~~gv~PDi--~t~gK~lgg--G~p~~av~~~~~i  268 (431)
T PRK06209        200 EPQDGFLHEVRRLCHENGALFILDEMI-TGFRWHMRGAQKLYGIVPDL--SCFGKALGN--GFAVSALAGKREY  268 (431)
T ss_pred             CCCHHHHHHHHHHHHHcCCEEEEEccc-ccCCcCcchhhHHhCCCcce--eeehhhhcC--CcccEEEEEHHHH
Confidence            333445999999999999999999998 333211      12335677  467999964  3557888776643

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.06  E-value=6e-09  Score=88.41  Aligned_cols=194  Identities=16%  Similarity=0.143  Sum_probs=123.3

Q ss_pred             eeEeeccCCCCC-CCCCCCCeeeccccccCCCC-CCCCCccCCC-CChh-HHHHHHHHHhHhCCC---------ceEEec
Q 024619           11 TLLMNFSNEFDP-YGALSTPLYQTATFKQPSAT-ENGPYDYTRS-GNPT-RDALESLLAKLDKAD---------RALCFT   77 (265)
Q Consensus        11 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~-~~~~~~y~~~-g~~~-~~~l~~~l~~~~g~~---------~~i~~~   77 (265)
                      ..-||++ ..-| ...-..|++++...+..... ....-.|-+. |.+. .+++.+.+   ||.+         ..+-..
T Consensus        26 ~~KVNLg-IGvY~de~Gk~pvl~aV~~Ae~~l~~~~~~k~Yl~i~G~~~f~~~~~~ll---FG~d~~~l~~~Rv~t~Qt~  101 (396)
T COG1448          26 PNKVNLG-IGVYKDEDGKTPVLRAVKKAEKRLLEQEKTKNYLPIEGLPEFLEAVQKLL---FGADSPALAEDRVATVQTL  101 (396)
T ss_pred             cCeeeee-eeeeeCCCCCcchhHHHHHHHHHhhccccccccCCcCCcHHHHHHHHHHh---cCCCcHHHHhhhHhheecC
Confidence            4466776 4444 22335677777654433322 2244556666 7764 54444433   3432         356667


Q ss_pred             chHHHHHHHHH---hcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC-------CCHHHHHhhcC--CCceEEEE
Q 024619           78 SGMAALAAVTH---LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-------CDLDEVASAIG--PWTKLVWV  145 (265)
Q Consensus        78 ~g~~al~~~~~---~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~~~--~~~~~i~~  145 (265)
                      +|+.|+.....   -..+...|.+++|+|+.+.    ...+..|.++...+.       .|.+.+.+.+.  ++..+|++
T Consensus       102 GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~----~If~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a~~~~vvLL  177 (396)
T COG1448         102 GGTGALRVAADFLARFFPDATVWISDPTWPNHK----AIFEAAGLEVETYPYYDAETKGLDFDGMLADLKTAPEGSVVLL  177 (396)
T ss_pred             CcchHHHHHHHHHHHhCCCceEEeCCCCcHhHH----HHHHhcCCceeeeeccccccccccHHHHHHHHHhCCCCCEEEE
Confidence            88899864333   3456677999999999997    445678888887763       26777777765  34445555


Q ss_pred             -ecCCCCccccccH---HHHHHHHHHcCCEEEEeCCcC---CCCCcC------CCCC-CccEEEeccccccccCCCceee
Q 024619          146 -ESPTNPRQQICDI---RKIAEMAHAHGALLLVDNSIM---SPVLSR------PLEL-GADIVMHSATKFIAGHSDVMAG  211 (265)
Q Consensus       146 -~~~~np~G~~~~l---~~i~~~a~~~~~~li~D~~~~---~~~~~~------~~~~-~~di~~~s~sK~~~g~~g~~~G  211 (265)
                       .-+|||||.-...   ++|+++.++.+.+-++|-+|-   .|.-.+      .... ..-+++.|+||.|+ .=|=|+|
T Consensus       178 H~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~~~~~~lva~S~SKnfg-LYgERVG  256 (396)
T COG1448         178 HGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLFAEVGPELLVASSFSKNFG-LYGERVG  256 (396)
T ss_pred             ecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHHHHHHhCCcEEEEehhhhhhh-hhhhccc
Confidence             5588999988654   778999999999999999974   221111      1111 12689999999994 4445666


Q ss_pred             EE
Q 024619          212 VL  213 (265)
Q Consensus       212 ~v  213 (265)
                      ..
T Consensus       257 a~  258 (396)
T COG1448         257 AL  258 (396)
T ss_pred             ee
Confidence            43

>PRK06917 hypothetical protein; Provisional

Probab=99.05  E-value=9.9e-09  Score=92.16  Aligned_cols=231  Identities=11%  Similarity=0.068  Sum_probs=135.0

Q ss_pred             cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCC-CCChhHHHHHHHHHhHhCC--CceEEecchHHHH
Q 024619            9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTR-SGNPTRDALESLLAKLDKA--DRALCFTSGMAAL   83 (265)
Q Consensus         9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~-~g~~~~~~l~~~l~~~~g~--~~~i~~~~g~~al   83 (265)
                      .+.++|+|.++  +..+|...|.+..+..-+...    ..+.+.. ..++...++.+.+.+.+..  +.+.+++||++|+
T Consensus        29 dG~~ylD~~~g~~~~~lGh~hp~v~~Ai~~ql~~----~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAv  104 (447)
T PRK06917         29 NGNKYFDGSSGAVTAGIGHGVKEIADAIKEQAEE----VSFVYRSQFTSEPAEKLAKKLSDLSPGDLNWSFFVNSGSEAN  104 (447)
T ss_pred             CCCEEEECchhHHhccCCCCCHHHHHHHHHHHhh----CcCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCChHHHH
Confidence            35678898643  455899988888776533322    1222221 2456678899999988743  3577788999998


Q ss_pred             HHHHHhc--------CC-CCEEEEcCCCCCChHHHHHhhcCCC-----------CeEEEeecC------C---------C
Q 024619           84 AAVTHLL--------GT-GEEIVAGDDLYGGTDRLLSRVTPKT-----------GVVVKRVNT------C---------D  128 (265)
Q Consensus        84 ~~~~~~~--------~~-g~~viv~~~~~~~~~~~~~~~~~~~-----------g~~~~~~~~------~---------d  128 (265)
                      .+.+.+.        .+ ..+|+....+|++............           +......|.      .         +
T Consensus       105 e~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  184 (447)
T PRK06917        105 ETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLAC  184 (447)
T ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCcccccccCCChHHHHHHH
Confidence            6433332        12 3678888888888754321211110           111111110      0         2


Q ss_pred             HHHHHhhcC----CCceEEEEecCCCC-cccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCc-----CCCCCCccE
Q 024619          129 LDEVASAIG----PWTKLVWVESPTNP-RQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADI  193 (265)
Q Consensus       129 ~~~l~~~~~----~~~~~i~~~~~~np-~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~-----~~~~~~~di  193 (265)
                      .+.+++.+.    +++.+|+++....- .|.+.+    ++++.++|++||+++|.||++. .|..+     ......+|+
T Consensus       185 ~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~~~a~~~~gv~PDi  264 (447)
T PRK06917        185 ATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHWGVEPDI  264 (447)
T ss_pred             HHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccchhhHHhcCCCCCE
Confidence            345555553    46899999987653 345533    7999999999999999999975 22222     122335788


Q ss_pred             EEeccccccccCCCc-eeeEEEeechhHHHHHHH----HHHhccCCCChhHHHHHHhccC
Q 024619          194 VMHSATKFIAGHSDV-MAGVLAVKGERLAKELYF----LQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       194 ~~~s~sK~~~g~~g~-~~G~v~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      +  +++|.+++  |+ ..|.++.+++. .+.+..    +....+...++..++..++.|+
T Consensus       265 ~--~~gK~l~~--G~~Pi~a~~~~~~i-~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~  319 (447)
T PRK06917        265 M--TLGKGLGA--GYTPIAATVVSDRV-MEPILRGSRSIMSGHTLSANPLSAATALAVLE  319 (447)
T ss_pred             E--Eeeehhcc--CCcceEEEEEcHHH-HHHHhccCcccccccCCCCCHHHHHHHHHHHH
Confidence            6  56999954  33 46777776644 333321    1112233445665555444444

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.03  E-value=9.6e-09  Score=91.78  Aligned_cols=202  Identities=13%  Similarity=0.037  Sum_probs=116.3

Q ss_pred             ceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCC--CceEEecchHHHHH-
Q 024619           10 STLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA--DRALCFTSGMAALA-   84 (265)
Q Consensus        10 ~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~--~~~i~~~~g~~al~-   84 (265)
                      +.++++|.+  ++.++|...|.+..+...+...   .........-++...++.+.+.++.+.  +.+.++++|++|+. 
T Consensus        44 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~~~~~---~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~  120 (427)
T TIGR00508        44 GRRLIDGMSSWWAAIHGYNHPRLNAAAQKQIDK---MSHVMFGGFTHKPAIELCQKLVKMTPNALDCVFLADSGSVAVEV  120 (427)
T ss_pred             CCEEEEccchHHHhcCCCCCHHHHHHHHHHHHh---cCCccccccCCHHHHHHHHHHHhhCCCCCCEEEEeCCcHHHHHH
Confidence            467888863  2347887766666554322211   011111111235567788888887643  46888889998875 


Q ss_pred             HHHHhc-------CC-CCEEEEcCCCCCChHHHHHhhcCCC-------C---eEEEeecC-----------CCHHHHHhh
Q 024619           85 AVTHLL-------GT-GEEIVAGDDLYGGTDRLLSRVTPKT-------G---VVVKRVNT-----------CDLDEVASA  135 (265)
Q Consensus        85 ~~~~~~-------~~-g~~viv~~~~~~~~~~~~~~~~~~~-------g---~~~~~~~~-----------~d~~~l~~~  135 (265)
                      ++....       .+ ..+|+....+|++............       +   ..+..++.           .|.+++++.
T Consensus       121 AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~  200 (427)
T TIGR00508       121 ALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAPQNRFDEEWNEEAITPLAKL  200 (427)
T ss_pred             HHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCCCccccchhHHHHHHHHHHH
Confidence            333221       12 3678888888887643221111100       0   00111110           134555555


Q ss_pred             cC---CCceEEEEecC-CCCcccc----ccHHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CCCCCccEEEeccccc
Q 024619          136 IG---PWTKLVWVESP-TNPRQQI----CDIRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATKF  201 (265)
Q Consensus       136 ~~---~~~~~i~~~~~-~np~G~~----~~l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~~~~~di~~~s~sK~  201 (265)
                      +.   +++++|++++. +.-.|.+    ..+++|.++|++||+++|+||+|. .|..+.     ......|+++  ++|.
T Consensus       201 l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~~~~~~~v~pDi~~--~gK~  278 (427)
T TIGR00508       201 MELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKLFACEHAGVVPDILC--VGKA  278 (427)
T ss_pred             HHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccchhhhcCCCCCEEE--echh
Confidence            53   46789999986 5544443    358999999999999999999983 222221     1233578775  7999


Q ss_pred             cccCCCc-eeeEEEeech
Q 024619          202 IAGHSDV-MAGVLAVKGE  218 (265)
Q Consensus       202 ~~g~~g~-~~G~v~~~~~  218 (265)
                      ++|  |+ .++.++.+++
T Consensus       279 l~g--G~~p~~a~~~~~~  294 (427)
T TIGR00508       279 LTG--GYMTLSATVTTDK  294 (427)
T ss_pred             hhc--CcccceEEEEcHH
Confidence            843  43 3566666554

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=99.02  E-value=1e-08  Score=87.36  Aligned_cols=186  Identities=19%  Similarity=0.180  Sum_probs=101.3

Q ss_pred             hHHHHHHHHHhHhCCC-c-eEEecchH-HHHH-HH-HHh----cC---C-----CCEEEEcCCCCCChHHHHHhhcCCCC
Q 024619           56 TRDALESLLAKLDKAD-R-ALCFTSGM-AALA-AV-THL----LG---T-----GEEIVAGDDLYGGTDRLLSRVTPKTG  118 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~-~-~i~~~~g~-~al~-~~-~~~----~~---~-----g~~viv~~~~~~~~~~~~~~~~~~~g  118 (265)
                      -.-++++.+++++|.+ + +++..+++ .-+. ++ .++    ..   |     .=+.+.+.|.|.-.+    ..++.+|
T Consensus        70 Gipe~r~l~a~llgv~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDRHF----ai~E~~G  145 (425)
T PF12897_consen   70 GIPEARELFAELLGVPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYDRHF----AITEHFG  145 (425)
T ss_dssp             --HHHHHHHHHHHTS-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--HHHH----HHHHHCT
T ss_pred             ChHHHHHHHHHHhCCCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCchHHH----HHHHhhC
Confidence            3667788889999987 3 44544555 3333 33 222    11   1     125788999985554    7778999


Q ss_pred             eEEEeecCC----CHHHHHhhcC--CCceEEE-EecCCCCcccccc---HHHHHHH-HHHcCCEEEEeCCcCCCCC-cC-
Q 024619          119 VVVKRVNTC----DLDEVASAIG--PWTKLVW-VESPTNPRQQICD---IRKIAEM-AHAHGALLLVDNSIMSPVL-SR-  185 (265)
Q Consensus       119 ~~~~~~~~~----d~~~l~~~~~--~~~~~i~-~~~~~np~G~~~~---l~~i~~~-a~~~~~~li~D~~~~~~~~-~~-  185 (265)
                      ++.+.||+.    |.+.+++.+.  +.+|.|+ ++--+||||.++.   +++++++ +...+..|++|++|+.-.+ .. 
T Consensus       146 iemi~VpM~~dGPDmD~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNAY~vHhL~~~~  225 (425)
T PF12897_consen  146 IEMIPVPMTEDGPDMDMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNAYAVHHLYDEE  225 (425)
T ss_dssp             -EEEEEEEETTEE-HHHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-TTTT-BSSSSS
T ss_pred             cEEEecCCCCCCCCHHHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecCceEeeccccc
Confidence            999999853    8999999874  5678875 4667799999976   4555555 2456999999999986554 11 


Q ss_pred             C--------------CCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619          186 P--------------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       186 ~--------------~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      +              ...+..+.+.|+||......|  ++++..+...+......+.. ...+..-..+....+-++
T Consensus       226 ~~~~~~nil~~~~~AGnpdrv~~F~STSKITf~GaG--va~~aaS~~Nl~~~~~~~~~-~tIgpdKvNQLRHvrff~  299 (425)
T PF12897_consen  226 PRDALLNILDACAKAGNPDRVYVFASTSKITFPGAG--VAFFAASEANLAWIKKHLSV-QTIGPDKVNQLRHVRFFK  299 (425)
T ss_dssp             S------HHHHHHHTT-TTSEEEEEESTTTS-TTSS---EEEEE-HHHHHHHHHHHHH-H-S---HHHHHHHHHHHH
T ss_pred             cchhhhHHHHHHHHcCCCCeEEEEecccccccCCcc--eeeeecCHHHHHHHHHHhcC-ceeCccHHHHHHHHHHhc
Confidence            1              122467999999995544445  58888887766554443333 223333333444433333

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=99.02  E-value=4.3e-09  Score=96.80  Aligned_cols=122  Identities=17%  Similarity=0.072  Sum_probs=87.7

Q ss_pred             EEEEcCCCCCChHHHHHhhcCCCCe---EEEeecCC-----CHHHHHhhcC----CC--ceEEEEecCCCCccccccHHH
Q 024619           95 EIVAGDDLYGGTDRLLSRVTPKTGV---VVKRVNTC-----DLDEVASAIG----PW--TKLVWVESPTNPRQQICDIRK  160 (265)
Q Consensus        95 ~viv~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~-----d~~~l~~~~~----~~--~~~i~~~~~~np~G~~~~l~~  160 (265)
                      .++++.-.|.+..    +.+...|+   .++.+|.+     |+++|++.+.    ++  +-+|+.+.....+|.+.|+++
T Consensus       224 ~vl~s~~aHyS~~----KAa~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~e  299 (608)
T TIGR03811       224 KWLVPQTKHYSWL----KAADIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDK  299 (608)
T ss_pred             EEEECCCccHHHH----HHHHHcCCCcccEEEeecCCCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHH
Confidence            4667777777775    55566666   46777654     7888887774    22  445666777788999999999


Q ss_pred             HHHHH---HHcCC--EEEEeCCcCCCC---CcC------C------------------------------CCCCccEEEe
Q 024619          161 IAEMA---HAHGA--LLLVDNSIMSPV---LSR------P------------------------------LELGADIVMH  196 (265)
Q Consensus       161 i~~~a---~~~~~--~li~D~~~~~~~---~~~------~------------------------------~~~~~di~~~  196 (265)
                      |+++|   +++|+  ++++|.+|+...   +.+      |                              .-..+|=++.
T Consensus       300 I~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItv  379 (608)
T TIGR03811       300 IVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTI  379 (608)
T ss_pred             HHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhcccccccccccccccccHhHHHHHhcCcCceEEEe
Confidence            99998   67887  699999998532   111      0                              0124788899


Q ss_pred             ccccccccCCCceeeEEEeechhHHH
Q 024619          197 SATKFIAGHSDVMAGVLAVKGERLAK  222 (265)
Q Consensus       197 s~sK~~~g~~g~~~G~v~~~~~~~~~  222 (265)
                      ++||++..|-+  +|+++.++..+..
T Consensus       380 DpHK~g~~Py~--~G~ll~Rd~~~~~  403 (608)
T TIGR03811       380 DPHKMGYIPYS--AGGIVIQDIRMRD  403 (608)
T ss_pred             CcccccccCCC--eEEEEEeCHHHHH
Confidence            99999887765  6888888876544

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.02  E-value=1.2e-08  Score=92.04  Aligned_cols=204  Identities=11%  Similarity=0.056  Sum_probs=123.5

Q ss_pred             cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccC-CCCChhHHHHHHHHHhHhC-------CCceEEecc
Q 024619            9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYT-RSGNPTRDALESLLAKLDK-------ADRALCFTS   78 (265)
Q Consensus         9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~-~~g~~~~~~l~~~l~~~~g-------~~~~i~~~~   78 (265)
                      .+.++|+|.++  +..+|...|.+..+...+....    .+... ...++...++.+.+.+...       .+.+.+.+|
T Consensus        62 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~l----~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~~~~~v~f~~s  137 (472)
T PRK08742         62 DGRRYLDAVSSWWTNLFGHAEPRIGAAIAAQAGEL----EQVMLAGFTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYADN  137 (472)
T ss_pred             CCCEEEEcCccHHhccCCCCCHHHHHHHHHHHHhC----CCccccccCCHHHHHHHHHHHHhCCCcccCCCCCEEEEeCC
Confidence            34678888543  4558888887776654332211    11111 1134567888888888763       246888899


Q ss_pred             hHHHHHHHHHhc--------CC-CCEEEEcCCCCCChHHHHHhhcCCC------C---eEEEeecCC-------------
Q 024619           79 GMAALAAVTHLL--------GT-GEEIVAGDDLYGGTDRLLSRVTPKT------G---VVVKRVNTC-------------  127 (265)
Q Consensus        79 g~~al~~~~~~~--------~~-g~~viv~~~~~~~~~~~~~~~~~~~------g---~~~~~~~~~-------------  127 (265)
                      |++|+.+.+.+.        ++ ..+|+....+|++............      +   ..+..++.+             
T Consensus       138 GSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~  217 (472)
T PRK08742        138 GSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAED  217 (472)
T ss_pred             chHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCccccccCCCHHH
Confidence            999885333221        12 3678888888888753321111100      0   011222221             


Q ss_pred             ----CHHHHHhhcC---CCceEEEEec-CCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCc-----CCCCC
Q 024619          128 ----DLDEVASAIG---PWTKLVWVES-PTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLEL  189 (265)
Q Consensus       128 ----d~~~l~~~~~---~~~~~i~~~~-~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~-----~~~~~  189 (265)
                          +++.+++.+.   +++.+|+++. ...-.|.+.+    ++++.++|++||+++|.||++. .|..+     .....
T Consensus       218 ~~~~~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~~~a~e~~gv  297 (472)
T PRK08742        218 YALQAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGTLFACEQAGV  297 (472)
T ss_pred             HHHHHHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchHHHhcCC
Confidence                1345555553   5788999998 4666677643    7999999999999999999974 34332     22244


Q ss_pred             CccEEEeccccccccCCCceeeEEEeechh
Q 024619          190 GADIVMHSATKFIAGHSDVMAGVLAVKGER  219 (265)
Q Consensus       190 ~~di~~~s~sK~~~g~~g~~~G~v~~~~~~  219 (265)
                      .+|+++.  +|.++|. -+..|.++.+++.
T Consensus       298 ~PDiv~~--gKgl~gG-~~Plaav~~~~ei  324 (472)
T PRK08742        298 MPDLLCL--SKGLTGG-FLPLSAVLATQQL  324 (472)
T ss_pred             CCCEEEE--cccccCC-CCCcceeeccHHH
Confidence            6899864  9998542 1246777676654

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=98.99  E-value=2.6e-08  Score=89.73  Aligned_cols=231  Identities=18%  Similarity=0.117  Sum_probs=133.7

Q ss_pred             cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCC----ceEEe-cchHH
Q 024619            9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD----RALCF-TSGMA   81 (265)
Q Consensus         9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~----~~i~~-~~g~~   81 (265)
                      .+.++|+|.++  +..+|...|.+.++..-+...   ...+......++...++.+.+.+.....    ..+++ +||++
T Consensus        56 dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~q~~~---~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~SGsE  132 (459)
T PRK06931         56 EGNQYLDCLAGAGTLALGHNHPDVLQSIQDVLTS---GLPLHTLDLTTPLKDAFSEYLLSLLPGQGKEYCLQFTGPSGAD  132 (459)
T ss_pred             CCCEEEEcccchhhccCCCCCHHHHHHHHHHHhh---hccccccccCCHHHHHHHHHHHHhCCCccccceEEEeCCCcHH
Confidence            45688999643  345898888887775432221   1111111124567788888998887422    24454 79999


Q ss_pred             HHHHHHHh---cCCCCEEEEcCCCCCChHHHHHhhcCCC---------CeEEEeecCCC-------------HHHH----
Q 024619           82 ALAAVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTPKT---------GVVVKRVNTCD-------------LDEV----  132 (265)
Q Consensus        82 al~~~~~~---~~~g~~viv~~~~~~~~~~~~~~~~~~~---------g~~~~~~~~~d-------------~~~l----  132 (265)
                      |....+.+   ....++|+....+|++.......+....         ...+..++.++             .+.+    
T Consensus       133 Ave~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (459)
T PRK06931        133 AVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYYF  212 (459)
T ss_pred             HHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHH
Confidence            98633332   3345678888888888864432221110         01122233221             2222    


Q ss_pred             HhhcC------CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCc-----CCCCCCccEEEe
Q 024619          133 ASAIG------PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADIVMH  196 (265)
Q Consensus       133 ~~~~~------~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~-----~~~~~~~di~~~  196 (265)
                      ++.+.      +++.+|+++....-.|.+.+    ++++.++|++||+++|.||++. .|..+     ......+|+++ 
T Consensus       213 ~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a~~~~gv~PDivt-  291 (459)
T PRK06931        213 ENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGIEPDIIV-  291 (459)
T ss_pred             HHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHHHhhhcCCCCCEEE-
Confidence            22221      35889999988877777643    7999999999999999999974 33332     22344689885 


Q ss_pred             ccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619          197 SATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       197 s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                       ++|.+++  |+..|.++.++. + +.+.......+..-+|..+...++.|+
T Consensus       292 -~gK~l~g--G~Pi~av~~~~~-~-~~~~~~~~~~T~~gnpla~aaala~L~  338 (459)
T PRK06931        292 -MSKAVGG--GLPLAVLGIKKE-F-DAWQPGGHTGTFRGNQLAMATGLTTLK  338 (459)
T ss_pred             -ecccccC--CcceeeeeeHHH-H-hhccCCCCCCCCCCCHHHHHHHHHHHH
Confidence             5999854  477788776543 3 222111122223344555555444443

>PRK07483 hypothetical protein; Provisional

Probab=98.98  E-value=2.1e-08  Score=89.99  Aligned_cols=204  Identities=13%  Similarity=0.137  Sum_probs=124.3

Q ss_pred             cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhC--CCceEEecchHHHHH
Q 024619            9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK--ADRALCFTSGMAALA   84 (265)
Q Consensus         9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g--~~~~i~~~~g~~al~   84 (265)
                      .+.++++|.+  ++..+|...|.+..+..-+....   .........++...++.+.+.++..  .+.+.+.+||++|+.
T Consensus        28 dG~~ylD~~~g~~~~~lGh~~p~v~~av~~ql~~~---~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve  104 (443)
T PRK07483         28 TGKRYLDASGGAAVSCLGHSHPRVIAAIHAQIDRL---AYAHTSFFTTEPAEALADRLVAAAPAGLEHVYFVSGGSEAVE  104 (443)
T ss_pred             CCCEEEEcCccHhhhccCCCCHHHHHHHHHHHHhc---cCccccccCCHHHHHHHHHHHHhCCCCCCEEEEcCCcHHHHH
Confidence            4568899964  35669998888887755333221   1111111245667888899988763  356888889999885


Q ss_pred             -HHHHh--c-----CCC-CEEEEcCCCCCChHHHHHhhcCC------CC---eEEEeecCC----C--------------
Q 024619           85 -AVTHL--L-----GTG-EEIVAGDDLYGGTDRLLSRVTPK------TG---VVVKRVNTC----D--------------  128 (265)
Q Consensus        85 -~~~~~--~-----~~g-~~viv~~~~~~~~~~~~~~~~~~------~g---~~~~~~~~~----d--------------  128 (265)
                       ++...  .     ++| .+|+....+|++...........      .+   ..+..++.+    +              
T Consensus       105 ~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (443)
T PRK07483        105 AALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYREQRAGESDEAYGQRL  184 (443)
T ss_pred             HHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCccccccccCCCHHHHHHHH
Confidence             33321  2     133 56888888888775322111100      00   011122211    1              


Q ss_pred             HHHHHhhcC----CCceEEEEecCCC-Ccccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCc-----CCCCCCccE
Q 024619          129 LDEVASAIG----PWTKLVWVESPTN-PRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADI  193 (265)
Q Consensus       129 ~~~l~~~~~----~~~~~i~~~~~~n-p~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~-----~~~~~~~di  193 (265)
                      ++++++.+.    +++.+|+++.... -.|.+.+    ++.+.++|++||+++|.||++. .|..+     ......+|+
T Consensus       185 ~~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDi  264 (443)
T PRK07483        185 ADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLFACEEDGVAPDL  264 (443)
T ss_pred             HHHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcHHHHHhhcCCCCCe
Confidence            245555442    5688999998875 3466643    8999999999999999999974 33332     122446898


Q ss_pred             EEeccccccccCCCc-eeeEEEeechh
Q 024619          194 VMHSATKFIAGHSDV-MAGVLAVKGER  219 (265)
Q Consensus       194 ~~~s~sK~~~g~~g~-~~G~v~~~~~~  219 (265)
                      ++  ++|.+++  |+ ..|.++.+++.
T Consensus       265 v~--~gK~l~g--G~~Pi~av~~~~~i  287 (443)
T PRK07483        265 VT--IAKGLGA--GYQPIGAVLASDRI  287 (443)
T ss_pred             ee--ehhhhcc--CccccEEEEEcHHH
Confidence            85  5999854  33 56777777654

>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]

Probab=98.95  E-value=1.6e-08  Score=84.11  Aligned_cols=189  Identities=17%  Similarity=0.243  Sum_probs=118.9

Q ss_pred             hHHHHHHHHHhHhCCCceEEecchHHHHHHHHHhcC---------C-CC-EEEEcCCCCCChHH-HHH-----hhcCCCC
Q 024619           56 TRDALESLLAKLDKADRALCFTSGMAALAAVTHLLG---------T-GE-EIVAGDDLYGGTDR-LLS-----RVTPKTG  118 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~~~i~~~~g~~al~~~~~~~~---------~-g~-~viv~~~~~~~~~~-~~~-----~~~~~~g  118 (265)
                      ...+.++++.+++|.+.++-.++|.+|......+.+         | .. .|+.....|++... ...     +.-+.+|
T Consensus       102 ~~~~f~~~vt~lf~~~kvlpmnTGaEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~fg  181 (427)
T KOG1402|consen  102 VLGEFAEYVTKLFGYDKVLPMNTGAEAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWDGFG  181 (427)
T ss_pred             hHHHHHHHHHHhcCcceeeecccchhHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCcchhhccC
Confidence            456677888888999999999999988864433322         3 22 23333333332210 000     0001122


Q ss_pred             e----EEEeecCCCHHHHHhhcC-CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCC-CCCc----
Q 024619          119 V----VVKRVNTCDLDEVASAIG-PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLS----  184 (265)
Q Consensus       119 ~----~~~~~~~~d~~~l~~~~~-~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~~-~~~~----  184 (265)
                      -    .+..++..|.++++.++. ++.++++++..+-..|.+.|    +++..++|++||+++|.||++.. +..+    
T Consensus       182 p~~P~~~~~v~Y~d~eale~~l~~~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~la  261 (427)
T KOG1402|consen  182 PFLPGVVDKVPYGDAEALEVALKSPNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLLA  261 (427)
T ss_pred             CCCCCcceeeccCCHHHHHHHhcCCCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcEEE
Confidence            1    134455679999999987 67899999999999998854    89999999999999999999852 2222    


Q ss_pred             -CCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619          185 -RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       185 -~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                       +.....+|+++.  .|.++| +-+....+.+.++.+.. ........+.+-+|..+.....+|+
T Consensus       262 ~d~env~PDivil--gKalSG-G~~Pvsavl~~~~im~~-~~pgeHgsTyggNpLg~~vaiAale  322 (427)
T KOG1402|consen  262 CDYENVRPDIVIL--GKALSG-GVYPVSAVLADDDIMLN-IKPGEHGSTYGGNPLGCAVAIAALE  322 (427)
T ss_pred             eehhhcCCCeEEE--eccccC-CeeeeEEEEecHHHHhc-cCCCccccccCCChHHHHHHHHHHH
Confidence             222335788874  898854 33555666665554433 3344444444445555555555554

>PLN02452 phosphoserine transaminase

Probab=98.91  E-value=1.4e-08  Score=88.69  Aligned_cols=152  Identities=15%  Similarity=0.072  Sum_probs=107.2

Q ss_pred             hhHHHHHHHHHhHhCCC---ceEEecch-HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeec----
Q 024619           55 PTRDALESLLAKLDKAD---RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN----  125 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~---~~i~~~~g-~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~----  125 (265)
                      ...+++++.++++++.+   +++++.+| +.++. +++.++.+|+++++....+  +-.-+.+.++..|...+...    
T Consensus        52 ~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea~~~nl~~~~~~~l~~~~G~--fg~r~~~~a~~~g~~~~~~~~~~~  129 (365)
T PLN02452         52 SIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAAIPLNLCKPGDKADFVVTGS--WSKKAAKEAKKYCKTNVIASGKDE  129 (365)
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHHHHHHhcCCCCCeEEEEECCH--HHHHHHHHHHHhCCCcEEEecCCC
Confidence            35888999999999864   35666444 57785 7788999999877654332  33334566677775444331    


Q ss_pred             ----CCCHHHHHhhcCCCceEEEEecCCCCcccc-ccHHHHHHHHHHcCCEEEEeCCcCCCCCcC-CCCCCccEEEeccc
Q 024619          126 ----TCDLDEVASAIGPWTKLVWVESPTNPRQQI-CDIRKIAEMAHAHGALLLVDNSIMSPVLSR-PLELGADIVMHSAT  199 (265)
Q Consensus       126 ----~~d~~~l~~~~~~~~~~i~~~~~~np~G~~-~~l~~i~~~a~~~~~~li~D~~~~~~~~~~-~~~~~~di~~~s~s  199 (265)
                          .+++++++  ..++.+.|.+++....||.. .|++++.+      +++++|.+.+.+..+. ..+++.|+  .|.+
T Consensus       130 ~~~~~~~~~~~~--~~~~~~~v~~~hnETstGv~~~~~~~i~~------~~lvVDa~Ss~g~~pidv~~~~v~~--~saq  199 (365)
T PLN02452        130 KYTKIPSVSEWE--LTPDAKFVHICANETIHGVEFKDYPDVGN------VPLVADMSSNFLSKPVDVSKYGVIY--AGAQ  199 (365)
T ss_pred             CCCCCCChHHcC--CCCCCcEEEECCCCCCCcEecCcccccCC------CeEEEECCccccCcccCHHHcCEEE--Eecc
Confidence                23555542  24578899999999999995 78877753      8999999999888763 33445444  6999


Q ss_pred             cccccCCCceeeEEEeechhHH
Q 024619          200 KFIAGHSDVMAGVLAVKGERLA  221 (265)
Q Consensus       200 K~~~g~~g~~~G~v~~~~~~~~  221 (265)
                      |.+ ||+|+  |+++.+++.+.
T Consensus       200 K~l-GP~Gl--~~v~vr~~~l~  218 (365)
T PLN02452        200 KNV-GPSGV--TIVIIRKDLIG  218 (365)
T ss_pred             ccc-CCCCe--EEEEEcHHHHh
Confidence            999 69995  88888887653

>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=98.91  E-value=2.4e-08  Score=85.26  Aligned_cols=205  Identities=17%  Similarity=0.178  Sum_probs=128.0

Q ss_pred             CcceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHh---CCCceEEecchHHH
Q 024619            8 GVSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD---KADRALCFTSGMAA   82 (265)
Q Consensus         8 ~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~---g~~~~i~~~~g~~a   82 (265)
                      ....++++|.+  +..-+|..+|.+.++....... .....+.|..   -+.-++++.+.+..   ..+.+.+.+||++|
T Consensus        53 ~~g~EyiD~~ssw~~~~~Ghanpev~ral~~q~~k-~~hs~~~~~t---~eav~l~~~l~~~~~~~~~~rvff~nsGTeA  128 (433)
T KOG1401|consen   53 PDGKEYIDFTSSWAVTILGHANPEVARALAEQAKK-LGHSSNGYFT---LEAVELEEVLSAVLGKGSAERVFFCNSGTEA  128 (433)
T ss_pred             CCcceeeeeccceeccccCCCCHHHHHHHHHHHhh-heeccCcccc---HHHHHHHHHHHhcccCCCccEEEEecCCcHH
Confidence            44578888844  4445888866655554322211 1111111111   12555666776666   56679999999999


Q ss_pred             HHHHHHh----cCC---CC--EEEEcCCCCCChHHHHHhhcCC--CCe-------EEEeecCCCHHHHHhhcCC---Cce
Q 024619           83 LAAVTHL----LGT---GE--EIVAGDDLYGGTDRLLSRVTPK--TGV-------VVKRVNTCDLDEVASAIGP---WTK  141 (265)
Q Consensus        83 l~~~~~~----~~~---g~--~viv~~~~~~~~~~~~~~~~~~--~g~-------~~~~~~~~d~~~l~~~~~~---~~~  141 (265)
                      +.+++.+    ...   -+  .+|....+|++...........  .+.       .++.....|..++++.+..   +..
T Consensus       129 ne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~~~ynd~t~l~k~~~~h~~~Ia  208 (433)
T KOG1401|consen  129 NETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEYNDSTALEKLFESHKGEIA  208 (433)
T ss_pred             HHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCCCCCCCceeecccCCHHHHHHHHHhCCCceE
Confidence            8633332    111   12  3888888887765443232222  222       1233334588899888863   368


Q ss_pred             EEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCc-----CCCCCCccEEEeccccccccCCCceee
Q 024619          142 LVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADIVMHSATKFIAGHSDVMAG  211 (265)
Q Consensus       142 ~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~-----~~~~~~~di~~~s~sK~~~g~~g~~~G  211 (265)
                      +|+++...--.|.+..    ++.|.++|+++|+++|.||++- .+..+     ......+||.+  +.|.++|  |+..|
T Consensus       209 AVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~a~e~~~~~PDI~t--~aK~L~g--GlPig  284 (433)
T KOG1401|consen  209 AVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGWAQEYFGVTPDITT--VAKPLGG--GLPIG  284 (433)
T ss_pred             EEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchHHHHHHhCcCCccee--ehhhccC--CceeE
Confidence            9999998876666632    7899999999999999999974 23332     23345688885  5999954  48899


Q ss_pred             EEEeechhH
Q 024619          212 VLAVKGERL  220 (265)
Q Consensus       212 ~v~~~~~~~  220 (265)
                      +...+++..
T Consensus       285 A~~v~~kV~  293 (433)
T KOG1401|consen  285 ATGVRDKVA  293 (433)
T ss_pred             EEeehHHHH
Confidence            998887644

>PRK08297 L-lysine aminotransferase; Provisional

Probab=98.84  E-value=1.5e-07  Score=84.53  Aligned_cols=191  Identities=13%  Similarity=0.065  Sum_probs=115.0

Q ss_pred             cceeEeeccCC--CCCCCCCCCCeee--ccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhC---CCceEEecchHH
Q 024619            9 VSTLLMNFSNE--FDPYGALSTPLYQ--TATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK---ADRALCFTSGMA   81 (265)
Q Consensus         9 ~~~~~~~~~~~--~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g---~~~~i~~~~g~~   81 (265)
                      .+.++++|.++  +..+|...|.+..  +..-+....... .........+...++.+.+.++.+   .+.+.+++||++
T Consensus        43 dG~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~ql~~l~~~-~~~~~~~~~~~~~~la~~l~~~~~p~~~~~v~f~~SGsE  121 (443)
T PRK08297         43 TGRRYLDMFTFFASSALGMNHPALADDPEFRAELGRAALN-KPSNSDVYTVEMARFVDTFARVLGDPELPHLFFVDGGAL  121 (443)
T ss_pred             CCCEeeecccCHhhhcCCCCChHHhhHHHHHHHHHHhhhh-ccccCCcCCHHHHHHHHHHHhhcCCCCCCEEEEeCchHH
Confidence            46788898543  5568999988887  544222211100 000111123556778888888762   346888999999


Q ss_pred             HHHHHHHhc---------CC------CCEEEEcCCCCCChHHHHHhhcCC-------CC------eEEEee--cC-----
Q 024619           82 ALAAVTHLL---------GT------GEEIVAGDDLYGGTDRLLSRVTPK-------TG------VVVKRV--NT-----  126 (265)
Q Consensus        82 al~~~~~~~---------~~------g~~viv~~~~~~~~~~~~~~~~~~-------~g------~~~~~~--~~-----  126 (265)
                      |+...+.+.         ..      ..+|+....+|++...........       ..      +....+  +.     
T Consensus       122 Ave~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (443)
T PRK08297        122 AVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLRFPLPGEDL  201 (443)
T ss_pred             HHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCccccCCCCCCCCCccccc
Confidence            986433332         01      256888888888875432222110       00      000001  10     


Q ss_pred             C--------CHHHHHhhcC---CCceEEEEecCCCCccccc----cHHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----
Q 024619          127 C--------DLDEVASAIG---PWTKLVWVESPTNPRQQIC----DIRKIAEMAHAHGALLLVDNSIM-SPVLSR-----  185 (265)
Q Consensus       127 ~--------d~~~l~~~~~---~~~~~i~~~~~~np~G~~~----~l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----  185 (265)
                      .        +++++++.+.   +++.+|+++......|.+.    .+++|.++|++||+++|.||++. .|..+.     
T Consensus       202 ~~~~~~~~~~~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~  281 (443)
T PRK08297        202 EEVEALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWAYQ  281 (443)
T ss_pred             chhhHHHHHHHHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccchHHHHH
Confidence            0        1234444453   5789999999888778773    38999999999999999999984 444331     


Q ss_pred             CCCCCccEEEecccccc
Q 024619          186 PLELGADIVMHSATKFI  202 (265)
Q Consensus       186 ~~~~~~di~~~s~sK~~  202 (265)
                      .....+|+++  ++|.+
T Consensus       282 ~~gv~PDiv~--~gK~l  296 (443)
T PRK08297        282 QLGVRPDIVA--FGKKT  296 (443)
T ss_pred             hcCCCCCEEE--ecccc
Confidence            2234689885  69987

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=98.82  E-value=6.4e-08  Score=83.95  Aligned_cols=151  Identities=14%  Similarity=0.059  Sum_probs=104.7

Q ss_pred             hHHHHHHHHHhHhCCC---ceEEecch-HHHHH-HHHHhcCCCCEEE--EcCCCCCChHHHHHhhcCCCCeEEEeec---
Q 024619           56 TRDALESLLAKLDKAD---RALCFTSG-MAALA-AVTHLLGTGEEIV--AGDDLYGGTDRLLSRVTPKTGVVVKRVN---  125 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~---~~i~~~~g-~~al~-~~~~~~~~g~~vi--v~~~~~~~~~~~~~~~~~~~g~~~~~~~---  125 (265)
                      ..+++++.++++++.+   +++++++| +.++. +.+.++++|++++  +....|   -.-|...++..| ++..+.   
T Consensus        50 i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea~~~Nll~~g~~~~~~~~tG~f---g~r~~~ea~~~g-~v~~~~~~~  125 (364)
T PRK12462         50 LLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSMIPMNFSRPGAAAPEYVTTGYW---SRKAIGEASRVA-AMRVVWDGA  125 (364)
T ss_pred             HHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHHHHHHcCCCCCcEEEEEeCCHH---HHHHHHHHHhcC-CceEecCcC
Confidence            4788999999999873   36666665 47776 7788999999654  444444   223345556665 333332   


Q ss_pred             ------CCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccc
Q 024619          126 ------TCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT  199 (265)
Q Consensus       126 ------~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~s  199 (265)
                            .++++++  .+.++.+.|.+++....+|...+     ++.+.++.++|+|.+.+.+..+...+ +.|+++.+..
T Consensus       126 ~~~~~~~p~~~~~--~~~~d~~~v~~t~NETstGv~~~-----~~~~~~~~llvvD~sS~~~s~pid~~-~~dvi~agsQ  197 (364)
T PRK12462        126 ASGYRTLPSLAEL--DWDARAPFRHYVSNETVEGLQFP-----DAAGLPDSPLIADMSSDFMSRPFDVE-AYGMVYAHAQ  197 (364)
T ss_pred             CCCCCcCCCHHHh--ccCCCCcEEEEccCCCCceEecC-----cccccCCCeEEEEcCchhhCCCCChH-HccEEEeecc
Confidence                  2244554  23456888999998889999986     33334689999999988766653333 2599999999


Q ss_pred             cccccCCCceeeEEEeechhHH
Q 024619          200 KFIAGHSDVMAGVLAVKGERLA  221 (265)
Q Consensus       200 K~~~g~~g~~~G~v~~~~~~~~  221 (265)
                      |.++ |+|+  ++++.+++.+.
T Consensus       198 Knlg-P~Gl--tvvivs~~al~  216 (364)
T PRK12462        198 KNLG-PAGV--TVAIIRRALLE  216 (364)
T ss_pred             ccCC-CCce--EEEEECHHHHh
Confidence            9995 9996  78888887653

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=98.81  E-value=1.1e-07  Score=85.11  Aligned_cols=191  Identities=12%  Similarity=0.052  Sum_probs=112.5

Q ss_pred             cceeEeeccC--CCCCCCCCCCCee--eccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHh---CCCceEEecchHH
Q 024619            9 VSTLLMNFSN--EFDPYGALSTPLY--QTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD---KADRALCFTSGMA   81 (265)
Q Consensus         9 ~~~~~~~~~~--~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~---g~~~~i~~~~g~~   81 (265)
                      .+.++|+|.+  ++..+|...|.+.  .+..-+..... .....+.....+...++.+++.++.   +.+.+.+.+||++
T Consensus        36 dG~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~q~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~f~~sGsE  114 (431)
T TIGR03251        36 DGRRYLDMFSFFASMALGMNHPALVDDLAFRARLGAAA-VNKPSNSDVYTVAMARFVDTFARVLGDPALPHLFFIEGGAL  114 (431)
T ss_pred             CCCChhhcccChhhcCCCCCChhhhHHHHHHHHHHHhh-hcccccCCCCCHHHHHHHHHHHHhcCCCCcCEEEEeCCcHH
Confidence            4567888854  3455898888887  44332221110 0001111123455667777777764   2346788899999


Q ss_pred             HHHHHHHhcC---------C------CCEEEEcCCCCCChHHHHHhhcCCCCeE-------------EEe--ecC-----
Q 024619           82 ALAAVTHLLG---------T------GEEIVAGDDLYGGTDRLLSRVTPKTGVV-------------VKR--VNT-----  126 (265)
Q Consensus        82 al~~~~~~~~---------~------g~~viv~~~~~~~~~~~~~~~~~~~g~~-------------~~~--~~~-----  126 (265)
                      |+.+.+.+..         .      +.+|+....+|++...............             ...  .+.     
T Consensus       115 Ave~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  194 (431)
T TIGR03251       115 AVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLTFPLDAPNL  194 (431)
T ss_pred             HHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCCccCCCCcccCCcccccc
Confidence            9863333220         1      3678888888887753321211110000             000  010     


Q ss_pred             C--------CHHHHHhhc---CCCceEEEEecCCCCccccc----cHHHHHHHHHHcCCEEEEeCCcC-CCCCc-----C
Q 024619          127 C--------DLDEVASAI---GPWTKLVWVESPTNPRQQIC----DIRKIAEMAHAHGALLLVDNSIM-SPVLS-----R  185 (265)
Q Consensus       127 ~--------d~~~l~~~~---~~~~~~i~~~~~~np~G~~~----~l~~i~~~a~~~~~~li~D~~~~-~~~~~-----~  185 (265)
                      .        +++++++.+   .+++.+|+++......|.+.    .+++|.++|++||+++|+||++. .|..+     .
T Consensus       195 ~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~a~~  274 (431)
T TIGR03251       195 DQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQ  274 (431)
T ss_pred             chhhHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccchHHHHH
Confidence            0        133344444   36789999999988888774    38999999999999999999986 34332     1


Q ss_pred             CCCCCccEEEecccccc
Q 024619          186 PLELGADIVMHSATKFI  202 (265)
Q Consensus       186 ~~~~~~di~~~s~sK~~  202 (265)
                      .....+|+++  ++|.+
T Consensus       275 ~~gv~PDi~~--~gK~~  289 (431)
T TIGR03251       275 QLGVQPDIVA--FGKKT  289 (431)
T ss_pred             hcCCCCCEEE--ecccC
Confidence            2234689885  58876

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=98.81  E-value=5.9e-08  Score=87.12  Aligned_cols=189  Identities=16%  Similarity=0.109  Sum_probs=113.5

Q ss_pred             cceeEeeccC--CCCCCCCCCCCeeecccccc-CCCCCCCCCccCCCCChhHHHHHHHHHh----HhC--CCceEEecch
Q 024619            9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQ-PSATENGPYDYTRSGNPTRDALESLLAK----LDK--ADRALCFTSG   79 (265)
Q Consensus         9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~y~~~g~~~~~~l~~~l~~----~~g--~~~~i~~~~g   79 (265)
                      .+.++++|.+  ++..+|...|.+.++...+. ....   .+.. ...++...++.+.+.+    +..  .+.+.+.+||
T Consensus        56 dG~~ylD~~sg~~~~~lGh~~p~i~~Ai~~q~~~~~l---~~~~-~~~~~~~~~la~~l~~~l~~~~p~~~~~v~f~~SG  131 (464)
T TIGR00699        56 DGNRLLDLYSQISSIPIGYNNPALLKAAQSPEMATTL---INRP-ALGNFPSKDWAKILKEGILKVAPKGQDQVWTGMSG  131 (464)
T ss_pred             CCCEEEEccCCHhhhcCCCCCHHHHHHHHHHHHHHhh---cccc-cCCcHHHHHHHHHHHHhHHhhCCCCcCEEEEeCCc
Confidence            4568899864  45558988888888865321 1100   0111 1244445566666543    442  3467888899


Q ss_pred             HHHHHHHHHhc----C-----------------------C---CCEEEEcCCCCCChHHHHHhhcCCC-----Ce---EE
Q 024619           80 MAALAAVTHLL----G-----------------------T---GEEIVAGDDLYGGTDRLLSRVTPKT-----GV---VV  121 (265)
Q Consensus        80 ~~al~~~~~~~----~-----------------------~---g~~viv~~~~~~~~~~~~~~~~~~~-----g~---~~  121 (265)
                      ++|+.+.+.+.    .                       +   ..+|+....+|++............     +.   .+
T Consensus       132 sEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~~~~~~~~~~  211 (464)
T TIGR00699       132 SDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAFDW  211 (464)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCc
Confidence            99986333322    0                       1   1268888888888764422221110     11   11


Q ss_pred             EeecCC-------------------CHHHHHhhcC---CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEe
Q 024619          122 KRVNTC-------------------DLDEVASAIG---PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVD  175 (265)
Q Consensus       122 ~~~~~~-------------------d~~~l~~~~~---~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D  175 (265)
                      ..+|.+                   +++.+++.+.   .++.+|+++......|.+.+    ++++.++|++||+++|+|
T Consensus       212 ~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~D  291 (464)
T TIGR00699       212 PQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVD  291 (464)
T ss_pred             eecCCCCcccccccccccchhHHHHHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe
Confidence            111111                   2344555553   46899999999888888876    899999999999999999


Q ss_pred             CCcC-CCCCcC-----CCCC--CccEEEeccccccc
Q 024619          176 NSIM-SPVLSR-----PLEL--GADIVMHSATKFIA  203 (265)
Q Consensus       176 ~~~~-~~~~~~-----~~~~--~~di~~~s~sK~~~  203 (265)
                      |++. .|..+.     ....  .+|++  +++|.++
T Consensus       292 EV~tGfGrtG~~fa~e~~gv~~~PDi~--t~gK~lg  325 (464)
T TIGR00699       292 EVQTGVGATGKFWAHEHWNLDDPPDMV--TFSKKFQ  325 (464)
T ss_pred             eeeeCCCCCcchhHHHhcCCCCCCCEE--Eehhhhc
Confidence            9973 332221     1122  38886  5699984

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]

Probab=98.74  E-value=9.1e-08  Score=81.34  Aligned_cols=232  Identities=16%  Similarity=0.105  Sum_probs=127.6

Q ss_pred             CcceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHh-CC-CceEEecchHHHH
Q 024619            8 GVSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD-KA-DRALCFTSGMAAL   83 (265)
Q Consensus         8 ~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~-g~-~~~i~~~~g~~al   83 (265)
                      ..+.++++|-.  ..-.+|.+.|.+..+...+.... -.....|   -++-..++++.|.+.+ +. +.+.+++||++|.
T Consensus        47 e~G~ryLD~f~Gi~tvslGHchP~v~~a~~kQl~~l-~H~t~~~---~~~pi~~~Ae~L~s~~P~~l~~vfF~nsGsEAN  122 (442)
T KOG1404|consen   47 EEGRRYLDAFGGIVTVSLGHCHPDVVAAAVKQLKKL-YHTTSGY---LNPPIHDLAEALVSKLPGDLKVVFFVNSGSEAN  122 (442)
T ss_pred             CCCceeehhhCCeEEEEcCCCChHHHHHHHHhhhhh-EEeeccc---cCCcHHHHHHHHHHhCCCCceEEEEecCCchHH
Confidence            34456666521  33447887777777765443221 1111111   2233455555555554 32 2577888899998


Q ss_pred             HHHHH---hcCCCCEEEEcCCCCCChHHHHHhhcCCC-----------CeEEEeecCC-------C---------HHHHH
Q 024619           84 AAVTH---LLGTGEEIVAGDDLYGGTDRLLSRVTPKT-----------GVVVKRVNTC-------D---------LDEVA  133 (265)
Q Consensus        84 ~~~~~---~~~~g~~viv~~~~~~~~~~~~~~~~~~~-----------g~~~~~~~~~-------d---------~~~l~  133 (265)
                      .+.+.   +....-.+|-...+|++.......+....           |......|.+       +         .++++
T Consensus       123 elal~mar~Yt~~~diIa~r~~YHG~t~~t~glt~~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~  202 (442)
T KOG1404|consen  123 ELALKMARLYTGNLDIIARRNSYHGNTLYTLGLTGLSPWKQNFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRYAKELE  202 (442)
T ss_pred             HHHHHHHHHhcCCceEEEeeccccCCchhhcccccCCcccccCCCCCCcccccCCCCcccccCCCCchhhhHHHHHHHHH
Confidence            53322   23333467777778876643211111111           1111111100       1         13333


Q ss_pred             hhcC----CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CCCCCccEEEeccc
Q 024619          134 SAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSAT  199 (265)
Q Consensus       134 ~~~~----~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~~~~~di~~~s~s  199 (265)
                      +.+.    +.+++++.+..+...|.+.+    +++.-++|+++|.++|.||++. +|..+.     ..+.-+||+  |++
T Consensus       203 d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG~~wgfe~h~v~PDIv--TmA  280 (442)
T KOG1404|consen  203 DLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTGHMWGFESHGVVPDIV--TMA  280 (442)
T ss_pred             HHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhccccccccccccccCCCccHH--HHH
Confidence            3332    45778899999988888853    7999999999999999999985 343332     112235776  789


Q ss_pred             cccccCCCceeeEEEeechhHHHHHHH-HHHhccCCCChhHHHHHHhccC
Q 024619          200 KFIAGHSDVMAGVLAVKGERLAKELYF-LQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       200 K~~~g~~g~~~G~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      |.+++  |...|.++..++ +.+.+.. .+...+..-.|..++..+..|+
T Consensus       281 KgiGn--G~Pl~AVvtt~E-Ia~v~~~~~~~fnTyggnP~a~avg~aVL~  327 (442)
T KOG1404|consen  281 KGIGN--GFPLGAVVTTPE-IADVLNQKSSHFNTYGGNPVACAVGLAVLK  327 (442)
T ss_pred             hhccC--CCcceeeecCHH-HHHHHHhccccccccCCCchhHHHHHHHHH
Confidence            99953  366788877664 4443332 2234444445555555444444

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=98.70  E-value=2e-07  Score=82.04  Aligned_cols=232  Identities=15%  Similarity=0.091  Sum_probs=133.0

Q ss_pred             ceeEeec--cCCCCCCCCCCCCeeeccccccCCCCCCCCC-ccCCCCChhHHHHHHHHHhHhC---CCceEEecchHHHH
Q 024619           10 STLLMNF--SNEFDPYGALSTPLYQTATFKQPSATENGPY-DYTRSGNPTRDALESLLAKLDK---ADRALCFTSGMAAL   83 (265)
Q Consensus        10 ~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~y~~~g~~~~~~l~~~l~~~~g---~~~~i~~~~g~~al   83 (265)
                      +.++++-  |+++...|...+.+..+...+..+.   ..+ .+.-++.| ..+|+++|+++..   .+.+.+.+||++|+
T Consensus        43 G~r~lDg~sg~W~~~~Gh~~~~i~~Ai~~Q~~~l---~~~~~~~~t~~P-a~~LA~~L~~~aP~~~l~~vFf~~sGSeAv  118 (449)
T COG0161          43 GRRYLDGMSGLWCVNHGHGRPEIAEAIKKQLDKL---PHVMFGGFTHEP-AIELAEKLAELAPEGGLDHVFFTDSGSEAV  118 (449)
T ss_pred             CCEEEecccHHHHhhcCcCCHHHHHHHHHHHHhC---CchhhcccCCch-HHHHHHHHHHhCCCCCccEEEEeCCchHHH
Confidence            3455554  3356667777777777765443321   111 22222557 8899999999986   34677778889998


Q ss_pred             HHHHHh-c-------CCC-CEEEEcCCCCCChHHHHHhhcC----------CCCeEEEeecCC-----------C-----
Q 024619           84 AAVTHL-L-------GTG-EEIVAGDDLYGGTDRLLSRVTP----------KTGVVVKRVNTC-----------D-----  128 (265)
Q Consensus        84 ~~~~~~-~-------~~g-~~viv~~~~~~~~~~~~~~~~~----------~~g~~~~~~~~~-----------d-----  128 (265)
                      .+.+.+ .       +|. .++|.-..+|++.....-.+..          ..-..+..++.+           +     
T Consensus       119 EtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~  198 (449)
T COG0161         119 ETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAE  198 (449)
T ss_pred             HHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCCcccccCCCCCChHHHHH
Confidence            644332 1       232 3477777888766422111111          000011122211           1     


Q ss_pred             -HHHHHhhcC----CCceEEEEecCCCC-cccccc----HHHHHHHHHHcCCEEEEeCCc-CCCCCcC-----CCCCCcc
Q 024619          129 -LDEVASAIG----PWTKLVWVESPTNP-RQQICD----IRKIAEMAHAHGALLLVDNSI-MSPVLSR-----PLELGAD  192 (265)
Q Consensus       129 -~~~l~~~~~----~~~~~i~~~~~~np-~G~~~~----l~~i~~~a~~~~~~li~D~~~-~~~~~~~-----~~~~~~d  192 (265)
                       .+++++.+.    +++.+++++....- .|.+.+    ++++.++|++||+++|.||+- ++|-.+.     -....+|
T Consensus       199 ~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~e~~gi~PD  278 (449)
T COG0161         199 AADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGKMFACEHAGIVPD  278 (449)
T ss_pred             HHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCchhhhhhhcCCCCC
Confidence             344555543    56889999987766 566643    799999999999999999995 3444432     2234579


Q ss_pred             EEEeccccccccCCCceeeEEEeechhHHHHHHHH-H--HhccC--CCChhHHHHHHhccCc
Q 024619          193 IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-Q--NAEGS--GLAPFDCWICLRGVKT  249 (265)
Q Consensus       193 i~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~-~--~~~~~--~~~~~~~~~~~~~l~~  249 (265)
                      |++  ++|.+.+ +-+..|.++++++ +.+.+..- .  ...+.  .-.|..++..++.|+-
T Consensus       279 i~~--~aKGLT~-GY~Pl~a~l~~~~-I~~~~~~~~~~~f~HG~TYsghPlacAaAla~L~i  336 (449)
T COG0161         279 ILC--LAKGLTG-GYLPLSAVLTSDR-IYEAFSDGDAGAFMHGHTYSGNPLACAAALANLDI  336 (449)
T ss_pred             eee--ecccccc-cchhhHhHhhhHH-HHHHHhcccCCeeccCCccccCHHHHHHHHHHHHH
Confidence            985  5898843 4455666655554 43422221 1  11222  2336777776666654

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=98.63  E-value=5.7e-08  Score=87.26  Aligned_cols=173  Identities=20%  Similarity=0.258  Sum_probs=124.6

Q ss_pred             CCCCCCCCCCCeeeccccccCCCCCCCCCccCCC------CChh-HHHHHHHHHhHhCCC--ceEEecchHHHH-HHHHH
Q 024619           19 EFDPYGALSTPLYQTATFKQPSATENGPYDYTRS------GNPT-RDALESLLAKLDKAD--RALCFTSGMAAL-AAVTH   88 (265)
Q Consensus        19 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~------g~~~-~~~l~~~l~~~~g~~--~~i~~~~g~~al-~~~~~   88 (265)
                      +-.|++..-|+.+++..+..+    .+..+|+++      |+.+ .-..+..++++.|.+  +.-++.-|++|- +..+.
T Consensus       124 GmGYyn~~vP~~I~RNilenp----~W~TqYTPYQ~EIsQGRLEsllNyQTmi~dlTGL~~aNASLLDEgTAaaEAm~l~  199 (1001)
T KOG2040|consen  124 GMGYYNTHVPAVILRNILENP----GWYTQYTPYQAEISQGRLESLLNYQTMITDLTGLPMANASLLDEGTAAAEAMALC  199 (1001)
T ss_pred             ccccccccCcHHHHHHhhhCC----cceeccCCCchhhhhhhHHHHhhhHHhhhhccCCcccchhhhccchhHHHHHHHH
Confidence            344777777777777654433    366677777      3332 445667778888877  577777787554 33333


Q ss_pred             h-cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHH
Q 024619           89 L-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA  167 (265)
Q Consensus        89 ~-~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~  167 (265)
                      . ..++.+.+++..+|+.....++..++-+|+++...+   +++... ..+++..+++-.|.. .|.+.|..++++.+++
T Consensus       200 ~~~~krkk~vvd~~~hpqtlsV~~TRa~~~~i~v~~~~---~~~~~~-s~~~v~gvlvQYP~t-~G~i~d~~el~~~a~~  274 (1001)
T KOG2040|consen  200 NRINKRKKFVVDSNCHPQTLSVVKTRAKGFGIKVVVSD---IKEADY-SSKDVSGVLVQYPDT-EGSVLDFDELVELAHA  274 (1001)
T ss_pred             HhhcccceEEecCCCCcchhhhhhccccccceeEEecC---HHHhhc-cccceeEEEEEcCCC-CCcccCHHHHHHHhhc
Confidence            3 566777999999999999888777788888865444   333322 234688889888854 7999999999999999


Q ss_pred             cCCEEEEe-CCcCCCCCcCCCCCCccEEEecccc
Q 024619          168 HGALLLVD-NSIMSPVLSRPLELGADIVMHSATK  200 (265)
Q Consensus       168 ~~~~li~D-~~~~~~~~~~~~~~~~di~~~s~sK  200 (265)
                      .|..++.- +-.+.-.+..|.++|.||.++|...
T Consensus       275 ~~s~vv~atDLLaLtiLrpPgefGaDIavGSsQR  308 (1001)
T KOG2040|consen  275 NGSLVVMATDLLALTILRPPGEFGADIAVGSSQR  308 (1001)
T ss_pred             cCceEEEeehhhHHHccCChhhcCceeeeccccc
Confidence            98876543 5456666778999999999999887

>KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism]

Probab=98.61  E-value=8.3e-08  Score=79.22  Aligned_cols=159  Identities=14%  Similarity=0.151  Sum_probs=120.3

Q ss_pred             HHHHHHHhHhCCC-ceEEecch-HHHHH-HHHHhcCC---CCEEEEcCCCCCChHHHHHhhcCCCCeEEEeec-------
Q 024619           59 ALESLLAKLDKAD-RALCFTSG-MAALA-AVTHLLGT---GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN-------  125 (265)
Q Consensus        59 ~l~~~l~~~~g~~-~~i~~~~g-~~al~-~~~~~~~~---g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~-------  125 (265)
                      -+-..++.+.|+. +.+.+.+. +..++ ++.++.+|   .-+|+.+.-+|++-...+..-++..|+.+...=       
T Consensus       115 ~il~l~~~iVGA~e~EvavmNsLTvNlh~Ll~sFyKPTekR~KILlE~kaFPSDhYAiesQ~~lhG~~~e~sm~~iePRE  194 (465)
T KOG3846|consen  115 PILPLLAPIVGAQENEVAVMNSLTVNLHSLLISFYKPTEKRFKILLEKKAFPSDHYAIESQCKLHGISPENSMIQIEPRE  194 (465)
T ss_pred             hhhhhhhhhccCCchhhhhHhhhhhHHHHHHHHhcCCcchhhhhhhccCCCCchHHHHHhhhhhcCCChHHheEEecccc
Confidence            3445556666766 45555554 45565 67778877   346999999999998888888888887754321       


Q ss_pred             ---CCCHHHHHhhcC---CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEecc
Q 024619          126 ---TCDLDEVASAIG---PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSA  198 (265)
Q Consensus       126 ---~~d~~~l~~~~~---~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~  198 (265)
                         ....+++.+-+.   ...++|+++..+.-||+..|+.+|...-+..|+++-+|-+|+.|..+ ..-++++|+.+...
T Consensus       195 GEetlRteDILd~IEkngDeiA~v~fSGvqyYTGQ~Fdi~aIT~Agq~kgc~VGfDLAHAvgNVpL~LHdWgVDFACWCS  274 (465)
T KOG3846|consen  195 GEETLRTEDILDTIEKNGDEIALVCFSGVQYYTGQYFDIGAITFAGQFKGCLVGFDLAHAVGNVPLQLHDWGVDFACWCS  274 (465)
T ss_pred             cccchhHHHHHHHHHhcCCeEEEEEeecceeecccccchhhhhhcccCCCcEechhhhhhhcCCceEEeecCCceEEEee
Confidence               113455555554   45788999999999999999999998888889999999999999887 34578999999999


Q ss_pred             ccccccCCCceeeEEEeec
Q 024619          199 TKFIAGHSDVMAGVLAVKG  217 (265)
Q Consensus       199 sK~~~g~~g~~~G~v~~~~  217 (265)
                      .|++++.+|-++|..+..+
T Consensus       275 YKYlnaGaGgIgGlFvHek  293 (465)
T KOG3846|consen  275 YKYLNAGAGGIGGLFVHEK  293 (465)
T ss_pred             ecccccCCCccceeeeehh
Confidence            9999977777788776544

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=98.61  E-value=6.7e-07  Score=85.23  Aligned_cols=108  Identities=13%  Similarity=0.120  Sum_probs=68.7

Q ss_pred             CCceEEEEecC-CCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCc-----CCCCCCccEEEeccccccccCC
Q 024619          138 PWTKLVWVESP-TNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADIVMHSATKFIAGHS  206 (265)
Q Consensus       138 ~~~~~i~~~~~-~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~-----~~~~~~~di~~~s~sK~~~g~~  206 (265)
                      +++.+|+++.. +.-.|.+.+    ++.+.++|++||+++|.||++. .|-.+     +.....+||++  ++|.++|. 
T Consensus       583 ~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~e~~gv~PDIi~--~gKgLtgG-  659 (817)
T PLN02974        583 GHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELLGCKPDIAC--YAKLLTGG-  659 (817)
T ss_pred             CCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhhHHhcCCCCCEEe--ecccccCC-
Confidence            46889999984 666677743    7999999999999999999974 33333     22344689996  59998542 


Q ss_pred             CceeeEEEeechhHHHHHHH------HHHhccCCCChhHHHHHHhccCc
Q 024619          207 DVMAGVLAVKGERLAKELYF------LQNAEGSGLAPFDCWICLRGVKT  249 (265)
Q Consensus       207 g~~~G~v~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~  249 (265)
                      -+..|.++++++ +.+.+..      +.......-+|..++..++.|+.
T Consensus       660 ~~Plaa~l~~~~-I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~  707 (817)
T PLN02974        660 LVPLAATLATEE-VFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQW  707 (817)
T ss_pred             CCccEEEEEcHH-HHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHH
Confidence            135677777664 4443321      11122233446666665555543

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=98.47  E-value=1.7e-06  Score=77.99  Aligned_cols=156  Identities=21%  Similarity=0.257  Sum_probs=115.5

Q ss_pred             CCccCCC----CCh-hHHHHHHHHHhHhCCCc-eEEecchHHH----HHHHHHhc-CCCC----EEEEcCCCCCChHHHH
Q 024619           46 PYDYTRS----GNP-TRDALESLLAKLDKADR-ALCFTSGMAA----LAAVTHLL-GTGE----EIVAGDDLYGGTDRLL  110 (265)
Q Consensus        46 ~~~y~~~----g~~-~~~~l~~~l~~~~g~~~-~i~~~~g~~a----l~~~~~~~-~~g~----~viv~~~~~~~~~~~~  110 (265)
                      ...|.+.    |+. ..+++++.++++.|.|. .+-.++|+++    +.++++.. .+|+    .-+++.-+|....   
T Consensus       568 IHPF~P~eQaqGY~~lf~~Le~~Lc~iTG~D~~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTNP---  644 (1001)
T KOG2040|consen  568 IHPFAPVEQAQGYQQLFTELEKDLCEITGFDSFSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTNP---  644 (1001)
T ss_pred             CCCCCchHHHhhHHHHHHHHHHHhheeecccceeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCCh---
Confidence            3445555    554 48899999999999995 5556667544    45566543 3333    3456777787776   


Q ss_pred             HhhcCCCCeEEEeecCC-----CHHHHHhhcC---CCceEEEEecCCCCccccc-cHHHHHHHHHHcCCEEEEeCCcCCC
Q 024619          111 SRVTPKTGVVVKRVNTC-----DLDEVASAIG---PWTKLVWVESPTNPRQQIC-DIRKIAEMAHAHGALLLVDNSIMSP  181 (265)
Q Consensus       111 ~~~~~~~g~~~~~~~~~-----d~~~l~~~~~---~~~~~i~~~~~~np~G~~~-~l~~i~~~a~~~~~~li~D~~~~~~  181 (265)
                       ..+...|.+++.|..+     |..++++...   ++..+++++.|+. .|... .+++++++.++||.-+..|++.--.
T Consensus       645 -ASA~MagmkvvpV~~~~~G~id~~dLk~kaekh~~~Laa~MvTYPST-~GvfE~~i~d~cd~iHehGGQVYlDGANMNA  722 (1001)
T KOG2040|consen  645 -ASAAMAGMKVVPVGCDANGNIDMVDLKAKAEKHKDNLAALMVTYPST-HGVFEEGIDDICDIIHEHGGQVYLDGANMNA  722 (1001)
T ss_pred             -hhHHhcCCEEEEeeccCCCCccHHHHHHHHHHhhhhhheeEEecccc-cccccccHHHHHHHHHhcCCEEEecCCCccc
Confidence             6678899999998865     6777776654   5678999999966 57774 6999999999999999999986443


Q ss_pred             C--CcCCCCCCccEEEeccccccccCC
Q 024619          182 V--LSRPLELGADIVMHSATKFIAGHS  206 (265)
Q Consensus       182 ~--~~~~~~~~~di~~~s~sK~~~g~~  206 (265)
                      .  +..|.+.|.|+.--.++|+|+-|.
T Consensus       723 qVGlc~pGd~GaDV~HLNLHKTFcIPH  749 (1001)
T KOG2040|consen  723 QVGLCRPGDIGADVCHLNLHKTFCIPH  749 (1001)
T ss_pred             eecccCCccccccceeecccceeeecC
Confidence            3  346889999999999999886443

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=98.29  E-value=5.7e-06  Score=71.42  Aligned_cols=151  Identities=13%  Similarity=0.100  Sum_probs=95.2

Q ss_pred             HHHhHhCCC---ceEEecchH-HHHH-HHHHhc--CCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC--------
Q 024619           63 LLAKLDKAD---RALCFTSGM-AALA-AVTHLL--GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--------  127 (265)
Q Consensus        63 ~l~~~~g~~---~~i~~~~g~-~al~-~~~~~~--~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--------  127 (265)
                      .+-+..|..   .+++++-.+ +++. +++++-  ..++.|+.+.-.+-+-.    .+....|.+++.++..        
T Consensus        64 d~~~~~G~~~~~~~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc~----kai~~AGl~~~vV~~~~~~d~l~t  139 (389)
T PF05889_consen   64 DALRLAGLRSVKSCFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKSCF----KAIERAGLEPVVVENVLEGDELIT  139 (389)
T ss_dssp             HHHHHTTHTTHCEEEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHHHH----HHHHHTT-EEEEE-EEEETTEEEE
T ss_pred             HHHHHcCCccccceEEEecccccHHHHHHHHHhcccCCceEEEeeccccchH----HHHHhcCCeEEEeeccCCCCeeec
Confidence            333445654   467776655 5554 444442  45788998887765554    4556679998888731        


Q ss_pred             CHHHHHhhcC---CCceEEEEecCCCCcccccc-HHHHHHHHHHcCCEEEEeCCcCCCCCc------CCCCC-CccEEEe
Q 024619          128 DLDEVASAIG---PWTKLVWVESPTNPRQQICD-IRKIAEMAHAHGALLLVDNSIMSPVLS------RPLEL-GADIVMH  196 (265)
Q Consensus       128 d~~~l~~~~~---~~~~~i~~~~~~np~G~~~~-l~~i~~~a~~~~~~li~D~~~~~~~~~------~~~~~-~~di~~~  196 (265)
                      |.+.+++.+.   ++..+.+++.++..-+...| +++|.++|+++|++.++-.+|+.-...      ..... ..|+.+.
T Consensus       140 d~~~ie~~i~~~G~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~i~~a~~~GRvda~vq  219 (389)
T PF05889_consen  140 DLEAIEAKIEELGADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSSKCMHLIQQAWRVGRVDAFVQ  219 (389)
T ss_dssp             HHHHHHHHHHHHCGGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT-HHHHHHHHHHHHHSTCSEEEE
T ss_pred             cHHHHHHHHHHhCCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhHHHHHHHHHHHHhcCCcceeee
Confidence            4566666553   55677788888888888887 999999999999999999999863221      11122 3689999


Q ss_pred             ccccccccCCCceeeEEEeechh
Q 024619          197 SATKFIAGHSDVMAGVLAVKGER  219 (265)
Q Consensus       197 s~sK~~~g~~g~~~G~v~~~~~~  219 (265)
                      |+.|.|..|.|  ++.+...++.
T Consensus       220 S~dkNF~VPvG--gai~As~~~~  240 (389)
T PF05889_consen  220 STDKNFMVPVG--GAIMASFDPS  240 (389)
T ss_dssp             EHHHHHCEESS--HEEEEESSHH
T ss_pred             ecCCCEEecCC--CcEEEecCHH
Confidence            99998888876  4566555543

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=98.25  E-value=2.1e-05  Score=66.71  Aligned_cols=157  Identities=22%  Similarity=0.227  Sum_probs=98.5

Q ss_pred             CChhHHHHHHH----HHhHhCCC---c--eEEecchHHH-HHHHHHhcCCCCEEEE-cCC--CCCChHHHHHhhcCCCCe
Q 024619           53 GNPTRDALESL----LAKLDKAD---R--ALCFTSGMAA-LAAVTHLLGTGEEIVA-GDD--LYGGTDRLLSRVTPKTGV  119 (265)
Q Consensus        53 g~~~~~~l~~~----l~~~~g~~---~--~i~~~~g~~a-l~~~~~~~~~g~~viv-~~~--~~~~~~~~~~~~~~~~g~  119 (265)
                      |+...++++..    .-+.|+.+   .  .+-.-||+.| +.+..++++|+++|+- +-|  .|-+.-..  .-.+....
T Consensus        80 Gne~ID~iE~LCq~RALeaF~ldp~kWGVNVQp~SGSPANfavYtall~Ph~RiMGLDLP~GGHLsHGy~--T~~kkISa  157 (477)
T KOG2467|consen   80 GNEYIDQIELLCQKRALEAFGLDPEKWGVNVQPYSGSPANFAVYTALLKPHERIMGLDLPSGGHLSHGYQ--TPTKKISA  157 (477)
T ss_pred             cchHHHHHHHHHHHHHHHHhCCCHHHCceeeccCCCCchhhHHHhhhcCCCCeeeeccCCCCCccccccc--cCCceeee
Confidence            55445554433    33557766   1  3444577755 5688899999999883 333  33222100  11122122


Q ss_pred             EEEeec-----------CCCHHHHHhhcC-CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcC-----CCC
Q 024619          120 VVKRVN-----------TCDLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIM-----SPV  182 (265)
Q Consensus       120 ~~~~~~-----------~~d~~~l~~~~~-~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~-----~~~  182 (265)
                      .-+++.           ..|.|.+++... =++++|+- ..+. --...|...+.++|.+.|++++.|.+|-     .+.
T Consensus       158 ~SiyFeSmPYkv~~~TG~IDYD~Le~~A~~frPk~iia-G~Sa-Y~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~v  235 (477)
T KOG2467|consen  158 TSIYFESMPYKVDPSTGYIDYDKLEKTATLFRPKLIIA-GTSA-YSRLIDYARFRKIADKVGAYLMADMAHISGLVAAGV  235 (477)
T ss_pred             eeeecccCceeeCCCCCceehHHHHHHHHhcCCcEEEe-cccc-chhhccHHHHHHHHHhcCceeehhhhhHHHHHhccc
Confidence            222221           127788877654 35665553 3322 1245788999999999999999999984     455


Q ss_pred             CcCCCCCCccEEEeccccccccCCCceeeEEEeec
Q 024619          183 LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG  217 (265)
Q Consensus       183 ~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~  217 (265)
                      +++|.+. .||+..+.+|.+-||.   +|+|..++
T Consensus       236 ipsPFey-~DiVTTTTHKsLRGPR---g~mIFyRk  266 (477)
T KOG2467|consen  236 IPSPFEY-CDIVTTTTHKSLRGPR---GAMIFYRK  266 (477)
T ss_pred             CCCcccc-cceeeccccccccCCc---ceeEEEec
Confidence            6678777 8999999999999885   58887775

>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]

Probab=98.18  E-value=3.3e-05  Score=64.22  Aligned_cols=134  Identities=16%  Similarity=0.167  Sum_probs=87.2

Q ss_pred             eEEecchHHHHHH----HHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC----eEEEeecC----CCHHHHHhhcCCC-
Q 024619           73 ALCFTSGMAALAA----VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG----VVVKRVNT----CDLDEVASAIGPW-  139 (265)
Q Consensus        73 ~i~~~~g~~al~~----~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g----~~~~~~~~----~d~~~l~~~~~~~-  139 (265)
                      .+-.-||+.|+.+    +..+++ ...|.+++|+|......+    +..|    ....+++.    .|.+.+...+... 
T Consensus       102 ~vQslsGTGAl~~~A~Fl~~~~~-~~~VY~SnPTW~nH~~if----~~aGf~tv~~Y~yWd~~~k~~d~e~~Lsdl~~AP  176 (410)
T KOG1412|consen  102 GVQSLSGTGALRIAADFLATFYN-KNTVYVSNPTWENHHAIF----EKAGFTTVATYPYWDAENKCVDLEGFLSDLESAP  176 (410)
T ss_pred             ceeeccccchhhhhHHHHHHhcc-cceeEecCCchhHHHHHH----HHcCCceeeeeeeecCCCceecHHHHHHHHhhCC
Confidence            3444567777643    233344 566999999999987544    5555    23334442    3888888887632 


Q ss_pred             -ceEEEEecC-CCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCcCCC----------CCCc-cEEEeccccccc
Q 024619          140 -TKLVWVESP-TNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSRPL----------ELGA-DIVMHSATKFIA  203 (265)
Q Consensus       140 -~~~i~~~~~-~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~~~~----------~~~~-di~~~s~sK~~~  203 (265)
                       -.++++..+ |||||.-.-   -.+|++..++.+.+.++|-+|-..+.+++.          +.+. -+++.||+|.+ 
T Consensus       177 e~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g~e~fv~QSFaKNf-  255 (410)
T KOG1412|consen  177 EGSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVEQGFELFVCQSFAKNF-  255 (410)
T ss_pred             CCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHhcCCeEEEEhhhhhhc-
Confidence             334555554 899997643   357888888899999999998544444332          1222 48999999988 


Q ss_pred             cCCCceeeE
Q 024619          204 GHSDVMAGV  212 (265)
Q Consensus       204 g~~g~~~G~  212 (265)
                      |.-+=|.|.
T Consensus       256 GlYneRvGn  264 (410)
T KOG1412|consen  256 GLYNERVGN  264 (410)
T ss_pred             ccccccccc
Confidence            444556664

>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]

Probab=98.08  E-value=2.9e-05  Score=67.85  Aligned_cols=158  Identities=17%  Similarity=0.200  Sum_probs=107.5

Q ss_pred             HHHHHHHHHhHhCCC-c--eEEecchHHH-HHHHHH---h-cC-CC-C--EEEEcCCCCCChHHHHHhhcCCCCeEEEee
Q 024619           57 RDALESLLAKLDKAD-R--ALCFTSGMAA-LAAVTH---L-LG-TG-E--EIVAGDDLYGGTDRLLSRVTPKTGVVVKRV  124 (265)
Q Consensus        57 ~~~l~~~l~~~~g~~-~--~i~~~~g~~a-l~~~~~---~-~~-~g-~--~viv~~~~~~~~~~~~~~~~~~~g~~~~~~  124 (265)
                      ..+....++.+++.+ +  ...+++|+++ +..-..   . .+ +| +  .++.....    ...|...++.+++++..+
T Consensus       122 e~~~Vnm~~~L~~~~~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v----~~a~eK~a~yf~v~l~~V  197 (491)
T KOG1383|consen  122 EAECVNMIANLFNAPSDSCGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNV----HAAFEKAARYFEVELREV  197 (491)
T ss_pred             HHHHHHHHHHHhcCCccccCccccccchHHHHHHHHHHHHHHhccCCCCccccchHHH----HHHHHHHHhhEEEEEEee
Confidence            445556677777655 2  2344445666 322221   1 11 12 1  23333323    334568888899999999


Q ss_pred             cCC------CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHH-cCCEEEEeCCcCCCCCc--C----CCCC--
Q 024619          125 NTC------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA-HGALLLVDNSIMSPVLS--R----PLEL--  189 (265)
Q Consensus       125 ~~~------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~-~~~~li~D~~~~~~~~~--~----~~~~--  189 (265)
                      +++      |+.++.+.+++++.+++.+-|+.|+|.+.|+++|.++..+ +++++.+|.+-+....+  .    +.+.  
T Consensus       198 ~~~~~~~~~D~~k~~~~i~eNti~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~~~fdFr~  277 (491)
T KOG1383|consen  198 PLDEGDYRVDPGKVVRMIDENTIMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLGGFINPAGYLNEEEFDFRV  277 (491)
T ss_pred             eccccceEecHHHHHHHhccceEEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccCccccccccccCccccccCC
Confidence            876      8999999999999999999999999999999999999999 99999999997643331  1    1111  


Q ss_pred             -CccEEEeccccccccCCCceeeEEEeechhH
Q 024619          190 -GADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       190 -~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                       ++.=+..+.||+-..|.|+  ++++-+++.+
T Consensus       278 p~V~Sisa~~HKYGl~~~G~--~~vl~r~k~~  307 (491)
T KOG1383|consen  278 PGVTSISADGHKYGLAPAGS--SWVLYRNKEL  307 (491)
T ss_pred             CCceeEeeccceeeeeecCc--EEEEEccccc
Confidence             2334666789987789985  6655555443

>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]

Probab=97.99  E-value=6e-05  Score=65.21  Aligned_cols=169  Identities=14%  Similarity=0.108  Sum_probs=108.4

Q ss_pred             CCCccCCC-CCh-hHHHHHHHHHhHhCCC---ceEEecchH-HHHHHHHHh---c-----CCC-----CEEE-EcCCCCC
Q 024619           45 GPYDYTRS-GNP-TRDALESLLAKLDKAD---RALCFTSGM-AALAAVTHL---L-----GTG-----EEIV-AGDDLYG  104 (265)
Q Consensus        45 ~~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~~~g~-~al~~~~~~---~-----~~g-----~~vi-v~~~~~~  104 (265)
                      ..+.|.-. .-- .-+++-..+.+..|-+   +.|+.++|+ +.+.++...   .     ..|     +-|+ .++-+|.
T Consensus       129 n~~TYEiAPvF~lmE~~vl~km~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHY  208 (510)
T KOG0629|consen  129 NMFTYEIAPVFVLMEEEVLAKMREIVGWEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHY  208 (510)
T ss_pred             CCceEEecceEEeehHHHHHHHHHHhCCCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchh
Confidence            34555444 222 2555666677776533   688888888 555443322   1     112     2344 4666776


Q ss_pred             ChHHHHHhhcCCCC---eEEEeecCC-----CHHHHHhhcC---CC---ceEEEEecCCCCccccccHHHHHHHHHHcCC
Q 024619          105 GTDRLLSRVTPKTG---VVVKRVNTC-----DLDEVASAIG---PW---TKLVWVESPTNPRQQICDIRKIAEMAHAHGA  170 (265)
Q Consensus       105 ~~~~~~~~~~~~~g---~~~~~~~~~-----d~~~l~~~~~---~~---~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~  170 (265)
                      +..    ..+...|   -.++.++.+     +++++++.+.   .+   +..|..+.-...-|...|++.|+++|++|++
T Consensus       209 Si~----kaAa~lg~gtd~c~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k~~l  284 (510)
T KOG0629|consen  209 SIK----KAAAFLGLGTDHCIKVKTDERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDLNGIADICEKHKL  284 (510)
T ss_pred             hHH----HHHHHhccCCceeEEecccccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcHHHHHHHHHhcCE
Confidence            665    3334444   455556544     6777777764   23   4556666666677888999999999999999


Q ss_pred             EEEEeCCcCCCCCcCCC-------CCCccEEEeccccccccCCCceeeEEEeechh
Q 024619          171 LLLVDNSIMSPVLSRPL-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGER  219 (265)
Q Consensus       171 ~li~D~~~~~~~~~~~~-------~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~  219 (265)
                      ++++|.+++.|.+-+..       -...+-+..+.||++++|  ++++....+.+.
T Consensus       285 WmHvDAAwGGglLmS~k~R~kl~Giera~SvtwnpHK~~gap--lqCsa~l~r~~g  338 (510)
T KOG0629|consen  285 WMHVDAAWGGGLLMSRKHRHKLTGIERANSVTWNPHKLMGAP--LQCSAFLTREEG  338 (510)
T ss_pred             EEEeecccccccccChhhHhhccCccccCceeecHHHhhcCc--chhhHHHHHHHH
Confidence            99999999987764221       223678888999999655  567776666544

>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]

Probab=97.97  E-value=8.9e-06  Score=67.25  Aligned_cols=176  Identities=17%  Similarity=0.164  Sum_probs=101.4

Q ss_pred             HhHhCCCceEEecchHHHHHHHHHh---cCCCCEEEEcCCCCCChHHHHHhhcCCC-----------CeEEEee-cCC--
Q 024619           65 AKLDKADRALCFTSGMAALAAVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTPKT-----------GVVVKRV-NTC--  127 (265)
Q Consensus        65 ~~~~g~~~~i~~~~g~~al~~~~~~---~~~g~~viv~~~~~~~~~~~~~~~~~~~-----------g~~~~~~-~~~--  127 (265)
                      +.+-+.+-+++++||++|..+.+.+   +.+...||+.+.+|++....   ..+..           .-+++++ |.+  
T Consensus        97 stlPeLsvc~F~NSGSEANDLALRLAR~ftkhqDvItldHAYHGHl~s---~mE~SPYKF~~g~~v~kpd~VHVAPcPDv  173 (452)
T KOG1403|consen   97 STLPELSVCFFVNSGSEANDLALRLARNFTKHQDVITLDHAYHGHLQS---VMEVSPYKFNQGGGVAKPDYVHVAPCPDV  173 (452)
T ss_pred             hcCCCceEEEEecCCchhhHHHHHHHHhhcccCceEEEechhccceee---eeeccceeccCCCCcCCCceeEecCCccc
Confidence            3334555688999999997544443   33444566667778766421   11211           1122222 211  


Q ss_pred             -------------C-----HHHHHhhcC------CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCc-
Q 024619          128 -------------D-----LDEVASAIG------PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSI-  178 (265)
Q Consensus       128 -------------d-----~~~l~~~~~------~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~-  178 (265)
                                   |     .+.+++.+.      .++.+.+.++-++-.|++.|    .+++.+..+.+|.+.|.||++ 
T Consensus       174 yrGK~r~~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQv  253 (452)
T KOG1403|consen  174 YRGKFRDKMYPDADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQV  253 (452)
T ss_pred             cccccccccCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhh
Confidence                         1     122333221      35667777888888888865    689999999999999999997 


Q ss_pred             CCCCCcC------CCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHH--HHHhccCCCChhHHHHHHhccC
Q 024619          179 MSPVLSR------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF--LQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       179 ~~~~~~~------~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      ++|.++.      ....=+||+  ++.|-++ . |-..+.++..+ ++.+.+..  +.+....+-+|..++..+.-|+
T Consensus       254 GFGRvG~hyWafq~y~fiPDIV--tmgKpmG-N-GhPVa~Vattk-eIA~Af~atgv~YFNTyGGnPVsCAv~laVm~  326 (452)
T KOG1403|consen  254 GFGRVGSHYWAFQTYNFIPDIV--TMGKPMG-N-GHPVAAVATTK-EIAQAFHATGVEYFNTYGGNPVSCAVGLAVMR  326 (452)
T ss_pred             cccccchhhhhhhhhccccchh--eecccCC-C-CCeeeEEeccH-HHHHHhccccceehhccCCCchhHHHHHHHHH
Confidence            3454442      112335777  5688884 2 34578887665 45443332  2233334455666666554444

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=97.96  E-value=4.3e-05  Score=64.82  Aligned_cols=160  Identities=18%  Similarity=0.148  Sum_probs=108.8

Q ss_pred             hhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHh-----cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-
Q 024619           55 PTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-----LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-  127 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~-----~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-  127 (265)
                      .....|++.+++.+|-+..+.+..|..|=. ++..+     ..||.+.++.+..|..+.   +...+.+|..++.++.+ 
T Consensus        79 rs~~~L~~avkdifGfq~~iPthQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTT---r~h~~~ng~~~~n~~~~e  155 (471)
T COG3033          79 RSYYALADAVKDIFGFQYTIPTHQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTT---RGHIQINGATPRNVYVDE  155 (471)
T ss_pred             ccHHHHHHHHHHhcCceeeeeccCCccHHHHHHHHHhhhccccCCccccccccceecch---hHHHHhcCCccccccccc
Confidence            456788888999999988888888865533 22222     345656666666665554   35567788888776643 


Q ss_pred             --------------CHHHHHhhcC----CCceEEEEecCCCCcc-cc---ccHHHHHHHHHHcCCEEEEeCCcC-CCCCc
Q 024619          128 --------------DLDEVASAIG----PWTKLVWVESPTNPRQ-QI---CDIRKIAEMAHAHGALLLVDNSIM-SPVLS  184 (265)
Q Consensus       128 --------------d~~~l~~~~~----~~~~~i~~~~~~np~G-~~---~~l~~i~~~a~~~~~~li~D~~~~-~~~~~  184 (265)
                                    |++.+++.+.    +++..|++.-.+|..| +-   ..++++.++|++|+++++.|.+.. .-++.
T Consensus       156 a~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYF  235 (471)
T COG3033         156 AFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYF  235 (471)
T ss_pred             cccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhh
Confidence                          7888888875    4677888777766555 33   468999999999999999998742 11211


Q ss_pred             ----CC--CCC-----------CccEEEeccccccccCCCceeeEEEeechhH
Q 024619          185 ----RP--LEL-----------GADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       185 ----~~--~~~-----------~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                          .+  .++           -.|-++.|.-|--..+   ++|++..+++..
T Consensus       236 Ik~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD~lvn---mGGfl~~~D~~~  285 (471)
T COG3033         236 IKQREPGYRDWSIEEIAREMYSYADGCTMSAKKDGLVN---MGGFLCFKDDSF  285 (471)
T ss_pred             hhhcCcccccccHHHHHHHHHhhhhhheeeccccceec---cccEEEecCccH
Confidence                00  011           2578888999954444   379999999853

>PLN02994 1-aminocyclopropane-1-carboxylate synthase

Probab=97.95  E-value=3.1e-05  Score=59.12  Aligned_cols=58  Identities=17%  Similarity=0.314  Sum_probs=46.4

Q ss_pred             ccCCC-CCh-hHHHHHHHHHhHhC--C--C-ceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCC
Q 024619           48 DYTRS-GNP-TRDALESLLAKLDK--A--D-RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGG  105 (265)
Q Consensus        48 ~y~~~-g~~-~~~~l~~~l~~~~g--~--~-~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~  105 (265)
                      .|++. |.+ +++++++++.+.+|  .  + +.|++++|+ +++. ++..++++||.|++++|.|+.
T Consensus        87 ~Y~~~~G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~dpGD~VlVp~P~Y~~  153 (153)
T PLN02994         87 LFQDYHGLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIADPGDAFLVPTPYYAA  153 (153)
T ss_pred             cCCCCCCcHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHcCCCCEEEEeCCCCCC
Confidence            37776 786 59999999999877  2  2 466666665 8886 778889999999999999973

>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]

Probab=97.63  E-value=0.00045  Score=58.41  Aligned_cols=131  Identities=18%  Similarity=0.181  Sum_probs=87.6

Q ss_pred             chHHHHH---HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC-------CCHHHHHhhcCC---CceEEE
Q 024619           78 SGMAALA---AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-------CDLDEVASAIGP---WTKLVW  144 (265)
Q Consensus        78 ~g~~al~---~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~~~~---~~~~i~  144 (265)
                      ||+.|+.   .++..+-++..|.+++|+|....    ...+..|+.+.....       .|.+.+.+.+.+   +..+++
T Consensus       128 SGTGaLriga~Fl~~f~~~~~I~ip~PTWgNh~----~if~~ag~~~~~yrYyd~~t~gld~~g~ledl~~~p~gs~ilL  203 (427)
T KOG1411|consen  128 SGTGALRVGAEFLARFYPSRDIYIPDPTWGNHK----NIFKDAGLPVKFYRYYDPKTRGLDFKGMLEDLGEAPEGSIILL  203 (427)
T ss_pred             cCcchhhHHHHHHHhhccccceeecCCcccccC----ccccccCcceeeeeeccccccccchHHHHHHHhcCCCCcEEEe
Confidence            5676663   34555566888999999999886    555778887765542       266666555542   222333


Q ss_pred             EecCCCCccccc---cHHHHHHHHHHcCCEEEEeCCcCCCCCcCCC----------CCC-ccEEEeccccccccCCCcee
Q 024619          145 VESPTNPRQQIC---DIRKIAEMAHAHGALLLVDNSIMSPVLSRPL----------ELG-ADIVMHSATKFIAGHSDVMA  210 (265)
Q Consensus       145 ~~~~~np~G~~~---~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~----------~~~-~di~~~s~sK~~~g~~g~~~  210 (265)
                      -.-.|||||.-.   .-++|.++.++.+.+-++|.+|-....++..          +.+ .-+++.|+.|.++ .=|=|+
T Consensus       204 haCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~~~laQSyAKNMG-LYgERv  282 (427)
T KOG1411|consen  204 HACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGHEILLAQSYAKNMG-LYGERV  282 (427)
T ss_pred             ehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHHcCCceEeehhhhhhcc-hhhhcc
Confidence            344789999764   3577889999999999999998655444222          112 3478899999984 444456


Q ss_pred             eEE
Q 024619          211 GVL  213 (265)
Q Consensus       211 G~v  213 (265)
                      |.+
T Consensus       283 Ga~  285 (427)
T KOG1411|consen  283 GAL  285 (427)
T ss_pred             cee
Confidence            643

>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]

Probab=97.00  E-value=0.0012  Score=58.03  Aligned_cols=116  Identities=16%  Similarity=0.155  Sum_probs=78.8

Q ss_pred             EE-EcCCCCCChHHHHHhhcCCCCeEEEeecCC-----CHHHHHhhcCCC-----ceEEEEecCCCCcccc--ccHHHHH
Q 024619           96 IV-AGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPW-----TKLVWVESPTNPRQQI--CDIRKIA  162 (265)
Q Consensus        96 vi-v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~~~~~-----~~~i~~~~~~np~G~~--~~l~~i~  162 (265)
                      |+ .++.+|.+.    +..+...+++++.++.+     +.+.|++++.++     +..+++. ....||.+  .++.+|.
T Consensus       184 V~Y~SDqahssv----eka~~i~~VklR~l~td~n~~mr~~~L~~AIe~D~arGlIPf~v~a-t~GTT~~ca~D~l~elg  258 (511)
T KOG0628|consen  184 VAYCSDQAHSSV----EKACLIAGVKLRALPTDENFGMRGDTLRKAIEEDIARGLIPFFVCA-TLGTTSSCAFDELEELG  258 (511)
T ss_pred             eEEecCcccchH----HHhHhhcceeEEEeecccCcCCCHHHHHHHHHHHHhCCCccEEEEE-eecCccccccccHHHhc
Confidence            44 466666555    46778888898888865     678888887643     2233332 22335544  5799999


Q ss_pred             HHHHHcCCEEEEeCCcCCCCCcCCC----CC---CccEEEeccccccccCCCceeeEEEeech
Q 024619          163 EMAHAHGALLLVDNSIMSPVLSRPL----EL---GADIVMHSATKFIAGHSDVMAGVLAVKGE  218 (265)
Q Consensus       163 ~~a~~~~~~li~D~~~~~~~~~~~~----~~---~~di~~~s~sK~~~g~~g~~~G~v~~~~~  218 (265)
                      .+|+++|+++++|.+|+..+...+.    -.   .+|=+.+..|||+...-.  +..++.++.
T Consensus       259 ~Vc~~~glWLHVDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfD--Cs~lWvkd~  319 (511)
T KOG0628|consen  259 PVCREEGLWLHVDAAYAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFD--CSPLWVKDG  319 (511)
T ss_pred             chhhhcCEEEEeehhhccccccCHHHHHHhhcchhhccccCChhheeEEeee--eecceeecC
Confidence            9999999999999999966654221    11   257777889998865533  566666664

>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

Probab=96.97  E-value=0.0011  Score=56.69  Aligned_cols=154  Identities=18%  Similarity=0.149  Sum_probs=90.9

Q ss_pred             hhHHHHHHHHHhHhCCC---ceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeec----
Q 024619           55 PTRDALESLLAKLDKAD---RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN----  125 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~---~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~----  125 (265)
                      ...++.++.++++++.+   .++++.+|. .... +.+.++.++..-.+....|.....   ..++..+.++...+    
T Consensus        50 ~v~~~a~~~lreLl~iPd~Y~VlflqGGat~qf~~~p~nLl~~~~~~yv~~g~Ws~~a~---~eA~~~~~~~~~~~~~~~  126 (365)
T COG1932          50 NVLEEAEKDLRELLNIPDDYKVLFLQGGATGQFAMAPMNLLGKRGTDYVDTGAWSEFAI---KEAKKVGKQPKLIDARIE  126 (365)
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEcCccHHHHHHHHHhhhcccCceeEeeeehhHhHH---HHHHHhccccccccccee
Confidence            35888999999999876   367777776 4454 667787665421333345544432   33343332211111    


Q ss_pred             ------CCCHHHHHhhcCCCceEEEEecCCCCcccccc-HHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEecc
Q 024619          126 ------TCDLDEVASAIGPWTKLVWVESPTNPRQQICD-IRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSA  198 (265)
Q Consensus       126 ------~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~-l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~  198 (265)
                            +++++...  +.++...|.+++-..-+|.-.+ ...+.   .  +.+++.|.+......... -.+.|++.+|.
T Consensus       127 ~~~~~~iP~~~~~~--~~~~~ayv~~~~NeTi~Gv~v~~~p~~~---~--~~~~v~D~SS~ilsr~iD-vsk~dviyaga  198 (365)
T COG1932         127 EAGYGSIPDLSKWD--FSDNDAYVHFCWNETISGVEVPELPDIG---S--DGLLVADASSAILSRPID-VSKYDVIYAGA  198 (365)
T ss_pred             ccCccCCCChhhcc--cCCCccEEEEecCCcccceEccCCCCCC---C--CceEEEecccHHhcCCCC-hhHcceEEEeh
Confidence                  22333322  2334445777766666676643 12111   1  278999988665554422 23579999999


Q ss_pred             ccccccCCCceeeEEEeechhHHH
Q 024619          199 TKFIAGHSDVMAGVLAVKGERLAK  222 (265)
Q Consensus       199 sK~~~g~~g~~~G~v~~~~~~~~~  222 (265)
                      .|.+ ||.|  .++++.+++.+.+
T Consensus       199 QKnl-GpaG--ltvvIvr~~~l~r  219 (365)
T COG1932         199 QKNL-GPAG--LTVVIVRPDLLER  219 (365)
T ss_pred             hhcc-Cccc--eEEEEEcHHHHhc
Confidence            9999 7888  4888888866543

>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]

Probab=96.54  E-value=0.0093  Score=50.92  Aligned_cols=63  Identities=19%  Similarity=0.239  Sum_probs=46.9

Q ss_pred             CceEEEEecCCCCccccc----cHHHHHHHHHHcCCEEEEeCCcC-CCCCcC-------CCCCCccEEEeccccccc
Q 024619          139 WTKLVWVESPTNPRQQIC----DIRKIAEMAHAHGALLLVDNSIM-SPVLSR-------PLELGADIVMHSATKFIA  203 (265)
Q Consensus       139 ~~~~i~~~~~~np~G~~~----~l~~i~~~a~~~~~~li~D~~~~-~~~~~~-------~~~~~~di~~~s~sK~~~  203 (265)
                      .+.+|+++..++..|.-.    -++.+.+++++||+.+|+||++- .|..+.       .+....|++  +|||=|.
T Consensus       271 pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~PpD~v--TFSKK~q  345 (484)
T KOG1405|consen  271 PVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSPPDVV--TFSKKFQ  345 (484)
T ss_pred             CeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCCCccce--ehhhhhh
Confidence            467899999999888763    27999999999999999999984 333331       223346777  5688664

>KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis]

Probab=92.48  E-value=0.29  Score=40.46  Aligned_cols=146  Identities=14%  Similarity=0.074  Sum_probs=79.8

Q ss_pred             HHHHHHHHhHhCCC---ceEEecchH-HHHH-HHHHh--cCCC-CEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC---
Q 024619           58 DALESLLAKLDKAD---RALCFTSGM-AALA-AVTHL--LGTG-EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT---  126 (265)
Q Consensus        58 ~~l~~~l~~~~g~~---~~i~~~~g~-~al~-~~~~~--~~~g-~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~---  126 (265)
                      .++....-.+.|..   ++++++-.+ ..+. ++.++  -+|. +.|+-..-.--+..    ...-..|.+++.+..   
T Consensus        60 ne~a~~~i~l~glhav~nc~vvpl~tgmslslc~~s~r~krpkakyiiw~ridqks~~----ksi~~agfepiiie~i~d  135 (432)
T KOG3843|consen   60 NEFAKDAIHLAGLHAVANCFVVPLATGMSLSLCFLSLRHKRPKAKYIIWLRIDQKSCF----KSIIHAGFEPIIIENILD  135 (432)
T ss_pred             HHHHHHHHHHhhhhhhhceeEEeccccccHHHHHHHHhhcCCcccEEEEEecchHHHH----HHHHhcCCCceeeecccc
Confidence            34444444455543   566666554 4453 55554  3444 33443333222222    222345777666541   


Q ss_pred             -----CCHHHHHhhcCC-Cce-EEEEecCCC-Ccccc-ccHHHHHHHHHHcCCEEEEeCCcCCCCCc------CCCCC-C
Q 024619          127 -----CDLDEVASAIGP-WTK-LVWVESPTN-PRQQI-CDIRKIAEMAHAHGALLLVDNSIMSPVLS------RPLEL-G  190 (265)
Q Consensus       127 -----~d~~~l~~~~~~-~~~-~i~~~~~~n-p~G~~-~~l~~i~~~a~~~~~~li~D~~~~~~~~~------~~~~~-~  190 (265)
                           .|++.+++.+.+ ... .+++-+..+ ..-.. ..+++|..+|..|+++-++..+|+.-.-.      ..... .
T Consensus       136 ~d~l~tdleav~~~iee~g~dcilci~sttscfapr~pd~leaiaaica~~diphivnnayglqsee~i~~iaa~~~~gr  215 (432)
T KOG3843|consen  136 GDELITDLEAVEAIIEELGEDCILCIHSTTSCFAPRSPDNLEAIAAICAAHDIPHIVNNAYGLQSEECIHKIAAAAECGR  215 (432)
T ss_pred             chHHHHhHHHHHHHHHHhCCceEEEEeecccccCCCCCchHHHHHHHHHccCchhhhccccccchHHHHHHHHHHhhhcc
Confidence                 267777666642 222 333322211 11112 34899999999999999999999754321      11222 2


Q ss_pred             ccEEEeccccccccCCC
Q 024619          191 ADIVMHSATKFIAGHSD  207 (265)
Q Consensus       191 ~di~~~s~sK~~~g~~g  207 (265)
                      .|.++.|+.|.|.-|-|
T Consensus       216 ida~vqsldknf~vpvg  232 (432)
T KOG3843|consen  216 IDAFVQSLDKNFMVPVG  232 (432)
T ss_pred             HHHHHHHhhhcceeecc
Confidence            68899999999988754

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=88.95  E-value=1.2  Score=36.23  Aligned_cols=92  Identities=17%  Similarity=0.221  Sum_probs=55.0

Q ss_pred             chHHHHHHHHHhcCCCCEEE-EcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccc
Q 024619           78 SGMAALAAVTHLLGTGEEIV-AGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQIC  156 (265)
Q Consensus        78 ~g~~al~~~~~~~~~g~~vi-v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~  156 (265)
                      +|..+-.++..+++++..|. +.++.-....    ..++..|++++..+.+|.+.|.++++. ...|++..+........
T Consensus         7 tG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~----~~l~~~g~~vv~~d~~~~~~l~~al~g-~d~v~~~~~~~~~~~~~   81 (233)
T PF05368_consen    7 TGNQGRSVVRALLSAGFSVRALVRDPSSDRA----QQLQALGAEVVEADYDDPESLVAALKG-VDAVFSVTPPSHPSELE   81 (233)
T ss_dssp             TSHHHHHHHHHHHHTTGCEEEEESSSHHHHH----HHHHHTTTEEEES-TT-HHHHHHHHTT-CSEEEEESSCSCCCHHH
T ss_pred             ccHHHHHHHHHHHhCCCCcEEEEeccchhhh----hhhhcccceEeecccCCHHHHHHHHcC-CceEEeecCcchhhhhh
Confidence            35555556666665665544 4444411111    333457899999999999999999974 44444444433233444


Q ss_pred             cHHHHHHHHHHcCCEEEE
Q 024619          157 DIRKIAEMAHAHGALLLV  174 (265)
Q Consensus       157 ~l~~i~~~a~~~~~~li~  174 (265)
                      -...+++.|++.|+-.++
T Consensus        82 ~~~~li~Aa~~agVk~~v   99 (233)
T PF05368_consen   82 QQKNLIDAAKAAGVKHFV   99 (233)
T ss_dssp             HHHHHHHHHHHHT-SEEE
T ss_pred             hhhhHHHhhhccccceEE
Confidence            467899999999976554

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PLN00191 enolase

Probab=86.21  E-value=6.1  Score=35.87  Aligned_cols=97  Identities=13%  Similarity=0.064  Sum_probs=69.4

Q ss_pred             chHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC--CCHHHHHhhcCCCceEEEEecCCCCcccc
Q 024619           78 SGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT--CDLDEVASAIGPWTKLVWVESPTNPRQQI  155 (265)
Q Consensus        78 ~g~~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~d~~~l~~~~~~~~~~i~~~~~~np~G~~  155 (265)
                      +..+++..+..++++-+.+.+++|........|..+.+...+.+..=+.  .+++.+++.+..+..=++..-+ |..|.+
T Consensus       296 s~~e~i~~~~~L~~~y~I~~IEDPl~~~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~iKl-~qiGGI  374 (457)
T PLN00191        296 SGDELIDLYKEFVSDYPIVSIEDPFDQDDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKV-NQIGTV  374 (457)
T ss_pred             CHHHHHHHHHHHhhcCCcEEEECCCCcccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEEecc-cccCCH
Confidence            3346667777777766777899998877777776766665554443332  4689999888765443333334 557999


Q ss_pred             ccHHHHHHHHHHcCCEEEEe
Q 024619          156 CDIRKIAEMAHAHGALLLVD  175 (265)
Q Consensus       156 ~~l~~i~~~a~~~~~~li~D  175 (265)
                      .+..+++++|+++|..+++-
T Consensus       375 Tea~~~a~lA~~~G~~~~is  394 (457)
T PLN00191        375 TESIEAVKMSKAAGWGVMTS  394 (457)
T ss_pred             HHHHHHHHHHHHCCCEEEeC
Confidence            99999999999999998764

>PLN02672 methionine S-methyltransferase

Probab=85.18  E-value=31  Score=35.00  Aligned_cols=180  Identities=16%  Similarity=0.107  Sum_probs=100.6

Q ss_pred             CCCCCccCCC-CCh-hHHHHHHHHHhHhCC----CceEEecchHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCC
Q 024619           43 ENGPYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPK  116 (265)
Q Consensus        43 ~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~g~~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~  116 (265)
                      ++..+.|.+. |.. .|..+...+..+++.    ++++++.+-..|+.-++.++.|.-.+ ++..---.....|...+..
T Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  494 (1082)
T PLN02672        416 GLSYFPCEPPAGSKRFRNLIAGFMRIYHHIPLTPDNVVVFPSRAVAIENALRLFSPRLAI-VDEHLTRWLPKKWLTSLAI  494 (1082)
T ss_pred             cCCCCCCCCCccchHHHHHHHHHHHHhcCCcCCccceEEeccHHHHHHHHHHhhChHHHh-hhhhhhccCCHHHHhHhhh
Confidence            4456667777 775 588888899888864    46778888888886555554442111 1110000001111111111


Q ss_pred             ----------CCeEEEeecCCCHHHHHhhcC-CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCC-----
Q 024619          117 ----------TGVVVKRVNTCDLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS-----  180 (265)
Q Consensus       117 ----------~g~~~~~~~~~d~~~l~~~~~-~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~-----  180 (265)
                                ..+++++.|..+. .+.+.++ =|+++|+..-.....-.-.-++.|.+.+++.|+.++.|..-..     
T Consensus       495 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  573 (1082)
T PLN02672        495 ENATSDSKSDDVITVIEAPRQSD-LVIELIKKLKPQVVVTGMADFEMRTSTAFEHLLNVTAEIGARLFLDISDHLELSSL  573 (1082)
T ss_pred             hcccccCccCCeEEEEeCCCcch-HHHHHHHhCCCeEEEEeccchhhhhHHHHHHHHHHHHhhCcEEEEehhhheeeccC
Confidence                      3456666665542 4444443 2577777554433222223578999999999999999976321     


Q ss_pred             ----CCC----cCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHH
Q 024619          181 ----PVL----SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF  226 (265)
Q Consensus       181 ----~~~----~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~  226 (265)
                          |.+    ..+... ...++.++-|.- -.+.+-.++++.-++.+.+.+..
T Consensus       574 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  625 (1082)
T PLN02672        574 PGSNGVLKYLAGHPLPS-HAAIICGLVKNQ-VYSDLEVAFVISENEAVLKALSK  625 (1082)
T ss_pred             CCcccHHHHhcCCCCCc-chhHhhhhhhcc-ccccceEEEEecCcHHHHHHHHH
Confidence                111    012222 223444677754 45667788888777666664443

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=81.49  E-value=16  Score=28.04  Aligned_cols=84  Identities=23%  Similarity=0.269  Sum_probs=55.9

Q ss_pred             hHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccH
Q 024619           79 GMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI  158 (265)
Q Consensus        79 g~~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l  158 (265)
                      |.-+-.++..+++.|-+|....-.-....    .   ..+++++..+..|.+.+.+++.. ...|+.+.+..+. .....
T Consensus         8 G~vG~~l~~~L~~~~~~V~~~~R~~~~~~----~---~~~~~~~~~d~~d~~~~~~al~~-~d~vi~~~~~~~~-~~~~~   78 (183)
T PF13460_consen    8 GFVGRALAKQLLRRGHEVTALVRSPSKAE----D---SPGVEIIQGDLFDPDSVKAALKG-ADAVIHAAGPPPK-DVDAA   78 (183)
T ss_dssp             SHHHHHHHHHHHHTTSEEEEEESSGGGHH----H---CTTEEEEESCTTCHHHHHHHHTT-SSEEEECCHSTTT-HHHHH
T ss_pred             ChHHHHHHHHHHHCCCEEEEEecCchhcc----c---ccccccceeeehhhhhhhhhhhh-cchhhhhhhhhcc-ccccc
Confidence            44556677888888876654332222221    2   67899999999999999999984 4555444332222 34457


Q ss_pred             HHHHHHHHHcCCE
Q 024619          159 RKIAEMAHAHGAL  171 (265)
Q Consensus       159 ~~i~~~a~~~~~~  171 (265)
                      +.+++.|++.++.
T Consensus        79 ~~~~~a~~~~~~~   91 (183)
T PF13460_consen   79 KNIIEAAKKAGVK   91 (183)
T ss_dssp             HHHHHHHHHTTSS
T ss_pred             ccccccccccccc
Confidence            8899999998873

...

>KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism]

Probab=80.71  E-value=15  Score=30.98  Aligned_cols=151  Identities=22%  Similarity=0.269  Sum_probs=84.8

Q ss_pred             hhHHHHHHHHHhHhCCC---ceEEecchH-HHHH-HHHHhc--CCC---CEEEEcCCCCCChHHHHHhhcCCCCeE-EEe
Q 024619           55 PTRDALESLLAKLDKAD---RALCFTSGM-AALA-AVTHLL--GTG---EEIVAGDDLYGGTDRLLSRVTPKTGVV-VKR  123 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~---~~i~~~~g~-~al~-~~~~~~--~~g---~~viv~~~~~~~~~~~~~~~~~~~g~~-~~~  123 (265)
                      ...++.+..+.++++..   .+++..+|. ...+ +.+.++  +.|   |-|+.  .+|..-  .+ .-+++.|.. .+.
T Consensus        52 kii~~tes~lreLlniPdn~~vlf~QGGGt~qFaAv~lNL~glK~g~~AdYiVT--GsWS~K--A~-~EAkk~~~~~~V~  126 (370)
T KOG2790|consen   52 KIINDTESLLRELLNIPDNYKVLFLQGGGTGQFAAVPLNLIGLKHGRCADYVVT--GSWSAK--AA-EEAKKYGTPNIVI  126 (370)
T ss_pred             HHHHHHHHHHHHHHcCCCceeEEEEeCCCcccccccchhhhccccCCccceEEe--ccccHH--HH-HHHHhhCCceEEe
Confidence            35788888999999876   366666654 4343 344454  445   33443  334221  22 223444433 333


Q ss_pred             ec--------CCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCC-CCccEE
Q 024619          124 VN--------TCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLE-LGADIV  194 (265)
Q Consensus       124 ~~--------~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~-~~~di~  194 (265)
                      .+        ++|.+..+  .+++.+.++.|.-....|.-.+---   .-.-+|.+++.|-..-+  +..+.+ ...+++
T Consensus       127 ~~~k~y~ygkvPd~~~w~--~~~da~yvyyCaNETVHGVEf~~~P---~~~~~~~vlVaDmSSnf--lSrpvDvsk~gvi  199 (370)
T KOG2790|consen  127 PKLKSYTYGKVPDPSTWE--LNPDASYVYYCANETVHGVEFDFIP---VNDPKGAVLVADMSSNF--LSRPVDVSKFGVI  199 (370)
T ss_pred             ccccccccCcCCChhhcc--cCCCccEEEEecCceeeceecCCCC---CCCCCCceEEEecccch--hcCCccchhcceE
Confidence            33        34555443  2456667777776666676542111   22345888899976432  222332 246789


Q ss_pred             EeccccccccCCCceeeEEEeechhH
Q 024619          195 MHSATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       195 ~~s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                      +.+..|.+ ||.|+  -+++.+++.+
T Consensus       200 ~aGAQKN~-G~aG~--Tvvivr~dll  222 (370)
T KOG2790|consen  200 FAGAQKNV-GPAGV--TVVIVRKDLL  222 (370)
T ss_pred             Eecccccc-Ccccc--EEEEEehhhh
Confidence            99999999 78886  4455566554

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=80.21  E-value=23  Score=28.57  Aligned_cols=92  Identities=17%  Similarity=0.207  Sum_probs=58.5

Q ss_pred             ceEEecchHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCC
Q 024619           72 RALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNP  151 (265)
Q Consensus        72 ~~i~~~~g~~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np  151 (265)
                      .++++++|..|..=+..+++.|..|.+-.|...+-.   ..+.+..+++++. ...+.+.+.     +..+|++. .+++
T Consensus        14 ~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el---~~~~~~~~i~~~~-~~~~~~~~~-----~~~lviaA-t~d~   83 (210)
T COG1648          14 KVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPEL---KALIEEGKIKWIE-REFDAEDLD-----DAFLVIAA-TDDE   83 (210)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHH---HHHHHhcCcchhh-cccChhhhc-----CceEEEEe-CCCH
Confidence            588999999999888889999999998888873333   3444555544433 222333333     23344433 3332


Q ss_pred             ccccccHHHHHHHHHHcCCEE-EEeCC
Q 024619          152 RQQICDIRKIAEMAHAHGALL-LVDNS  177 (265)
Q Consensus       152 ~G~~~~l~~i~~~a~~~~~~l-i~D~~  177 (265)
                      .    -=++|.+.|+++++++ ++|+.
T Consensus        84 ~----ln~~i~~~a~~~~i~vNv~D~p  106 (210)
T COG1648          84 E----LNERIAKAARERRILVNVVDDP  106 (210)
T ss_pred             H----HHHHHHHHHHHhCCceeccCCc
Confidence            1    2278999999999875 55554

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=80.12  E-value=9.7  Score=31.83  Aligned_cols=88  Identities=14%  Similarity=0.151  Sum_probs=53.1

Q ss_pred             EEecchH--HHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcC-----CC-ceEEEE
Q 024619           74 LCFTSGM--AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG-----PW-TKLVWV  145 (265)
Q Consensus        74 i~~~~g~--~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~-----~~-~~~i~~  145 (265)
                      +++++++  .+-.++..+.+.|..|.+..-.-..        ....+++++..+..|.+.+.++++     .. ...+++
T Consensus         2 ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~--------~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~   73 (285)
T TIGR03649         2 ILLTGGTGKTASRIARLLQAASVPFLVASRSSSS--------SAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYL   73 (285)
T ss_pred             EEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCcc--------ccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEE
Confidence            3455544  3445667777778766543211100        122466677778889999988873     23 566666


Q ss_pred             ecCCCCccccccHHHHHHHHHHcCC
Q 024619          146 ESPTNPRQQICDIRKIAEMAHAHGA  170 (265)
Q Consensus       146 ~~~~np~G~~~~l~~i~~~a~~~~~  170 (265)
                      ..+..+ ........+++.|++.|+
T Consensus        74 ~~~~~~-~~~~~~~~~i~aa~~~gv   97 (285)
T TIGR03649        74 VAPPIP-DLAPPMIKFIDFARSKGV   97 (285)
T ss_pred             eCCCCC-ChhHHHHHHHHHHHHcCC
Confidence            655332 233456788999999886

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>TIGR01060 eno phosphopyruvate hydratase

Probab=80.07  E-value=11  Score=33.88  Aligned_cols=92  Identities=12%  Similarity=0.043  Sum_probs=62.7

Q ss_pred             HHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCC--CeEEEeecC--CCHHHHHhhcCCCceEEEEecCCCCccccc
Q 024619           81 AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT--GVVVKRVNT--CDLDEVASAIGPWTKLVWVESPTNPRQQIC  156 (265)
Q Consensus        81 ~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~--g~~~~~~~~--~d~~~l~~~~~~~~~~i~~~~~~np~G~~~  156 (265)
                      +++..+..++++-+.+.+++|....-...|..+.+..  .+.+..=+.  .+++.+++.+..+..=++..-+ |..|.+.
T Consensus       266 eai~~~~~lle~~~i~~iEdPl~~~D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~~a~d~v~ik~-~~iGGIt  344 (425)
T TIGR01060       266 EMIEYYKELVEKYPIVSIEDGLSEEDWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEMGVANSILIKP-NQIGTLT  344 (425)
T ss_pred             HHHHHHHHHHhcCCcEEEEcCCCcccHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHhCCCCEEEecc-cccCCHH
Confidence            4555555566655667899998877667776666665  344433332  2588888888755433333334 5589999


Q ss_pred             cHHHHHHHHHHcCCEEE
Q 024619          157 DIRKIAEMAHAHGALLL  173 (265)
Q Consensus       157 ~l~~i~~~a~~~~~~li  173 (265)
                      +..+++++|+++|+.++
T Consensus       345 ea~~ia~lA~~~Gi~~v  361 (425)
T TIGR01060       345 ETLDAVELAKKAGYTAV  361 (425)
T ss_pred             HHHHHHHHHHHcCCcEE
Confidence            99999999999999755

Alternate name: enolase

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	265
1ibj_A	464	Crystal Structure Of Cystathionine Beta-Lyase From		1e-126
2nmp_A	403	Crystal Structure Of Human Cystathionine Gamma Lyas		5e-57
3elp_B	410	Structure Of Cystationine Gamma Lyase Length = 410		7e-57
3e6g_A	400	Crystal Structure Of Xometc, A Cystathionine C-Lyas		8e-52
1n8p_A	393	Crystal Structure Of Cystathionine Gamma-lyase From		1e-50
3mkj_A	398	Methionine Gamma-Lyase From Citrobacter Freundii Wi		2e-49
3qhx_A	392	Crystal Structure Of Cystathionine Gamma-Synthase M		5e-49
2rfv_A	398	High Resolution Structure Of L-Methionine Gamma-Lya		2e-48
3jwa_A	398	Crystal Structure Of L-Methionine Gamma-Lyase From		4e-48
1y4i_A	398	Crystal Structure Of Citrobacter Freundii L-Methion		4e-48
3jw9_A	398	Crystal Structure Of L-Methionine Gamma-Lyase From		5e-48
1pg8_A	398	Crystal Structure Of L-Methionine Alpha-, Gamma-Lya		3e-42
3vk2_A	398	Crystal Structure Of L-Methionine Gamma-Lyase From		8e-42
3aej_A	389	Reaction Intermediate Structure Of Entamoeba Histol		8e-42
1gc0_A	398	Crystal Structure Of The Pyridoxal-5'-Phosphate Dep		1e-41
3acz_A	389	Crystal Structure Of Entamoeba Histolytica Methioni		4e-41
1e5e_A	404	Methionine Gamma-Lyase (Mgl) From Trichomonas Vagin		3e-39
1cs1_A	386	Cystathionine Gamma-Synthase (Cgs) From Escherichia		3e-38
1qgn_A	445	Cystathionine Gamma-Synthase From Nicotiana Tabacum		8e-30
3ndn_A	414	Crystal Structure Of O-Succinylhomoserine Sulfhydry		3e-29
1pff_A	331	Crystal Structure Of Homocysteine Alpha-, Gamma-Lya		6e-28
3ri6_A	430	A Novel Mechanism Of Sulfur Transfer Catalyzed By O		7e-25
2ctz_A	421	Crystal Structure Of O-Acetyl Homoserine Sulfhydryl		1e-22
2cb1_A	412	Crystal Structure Of O-Actetyl Homoserine Sulfhydry		1e-19
1cl2_A	395	Cystathionine Beta-Lyase (Cbl) From Escherichia Col		3e-14
2fq6_A	415	Cystathionine Beta-Lyase (Cbl) From Escherichia Col		3e-14
1cl1_A	395	Cystathionine Beta-Lyase (Cbl) From Escherichia Col		1e-13

>pdb|1IBJ|A Chain A, Crystal Structure Of Cystathionine Beta-Lyase From Arabidopsis Thaliana Length = 464

Iteration: 1
 Score =  447 bits (1149), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 208/258 (80%), Positives = 232/258 (89%)
Query: 1   MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDAL 60
           M+++EE  VSTLL+N  N+FDP+ A+STPLYQTATFKQPSA ENGPYDYTRSGNPTRDAL
Sbjct: 79  MNIKEEASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDAL 138
Query: 61  ESXXXXXXXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
           ES            CFTSGMAAL+AVTHL+  GEEIVAGDD+YGG+DRLLS+V P++GVV
Sbjct: 139 ESLLAKLDKADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVV 198
Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS 180
           VKRVNT  LDEVA+AIGP TKLVW+ESPTNPRQQI DIRKI+EMAHA GAL+LVDNSIMS
Sbjct: 199 VKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMS 258
Query: 181 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC 240
           PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDC
Sbjct: 259 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDC 318
Query: 241 WICLRGVKTMALRVEKQQ 258
           W+CLRG+KTMALR+EKQQ
Sbjct: 319 WLCLRGIKTMALRIEKQQ 336

>pdb|2NMP|A Chain A, Crystal Structure Of Human Cystathionine Gamma Lyase Length = 403

Iteration: 1
 Score =  217 bits (552), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 103/234 (44%), Positives = 152/234 (64%), Gaps = 1/234 (0%)
Query: 25  ALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALA 84
           A+  P+  + TFKQ +  ++  ++Y+RSGNPTR+ LE              F SG+AA  
Sbjct: 37  AVVPPISLSTTFKQGAPGQHSGFEYSRSGNPTRNCLEKAVAALDGAKYCLAFASGLAATV 96
Query: 85  AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVW 144
            +THLL  G++I+  DD+YGGT+R   +V  + G+ +  V+   +  + +AI P TKLVW
Sbjct: 97  TITHLLKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCSKIKLLEAAITPETKLVW 156
Query: 145 VESPTNPRQQICDIRKIAEMAHAHGALLL-VDNSIMSPVLSRPLELGADIVMHSATKFIA 203
           +E+PTNP Q++ DI   A + H HG ++L VDN+ MSP   RPL LGADI M+SATK++ 
Sbjct: 157 IETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPLALGADISMYSATKYMN 216
Query: 204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQ 257
           GHSDV+ G+++V  E L   L FLQN+ G+  +P DC++C RG+KT+ +R+EK 
Sbjct: 217 GHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLKTLHVRMEKH 270

>pdb|3ELP|B Chain B, Structure Of Cystationine Gamma Lyase Length = 410

Iteration: 1
 Score =  217 bits (552), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 103/234 (44%), Positives = 152/234 (64%), Gaps = 1/234 (0%)
Query: 25  ALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALA 84
           A+  P+  + TFKQ +  ++  ++Y+RSGNPTR+ LE              F SG+AA  
Sbjct: 41  AVVPPISLSTTFKQGAPGQHSGFEYSRSGNPTRNCLEKAVAALDGAKYCLAFASGLAATV 100
Query: 85  AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVW 144
            +THLL  G++I+  DD+YGGT+R   +V  + G+ +  V+   +  + +AI P TKLVW
Sbjct: 101 TITHLLKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCSKIKLLEAAITPETKLVW 160
Query: 145 VESPTNPRQQICDIRKIAEMAHAHGALLL-VDNSIMSPVLSRPLELGADIVMHSATKFIA 203
           +E+PTNP Q++ DI   A + H HG ++L VDN+ MSP   RPL LGADI M+SATK++ 
Sbjct: 161 IETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPLALGADISMYSATKYMN 220
Query: 204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQ 257
           GHSDV+ G+++V  E L   L FLQN+ G+  +P DC++C RG+KT+ +R+EK 
Sbjct: 221 GHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLKTLHVRMEKH 274

>pdb|3E6G|A Chain A, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like Protein From Xanthomonas Oryzae Pv.Oryzae Length = 400

Iteration: 1
 Score =  200 bits (508), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 111/253 (43%), Positives = 156/253 (61%), Gaps = 5/253 (1%)
Query: 9   VSTLLMNFSNEFDPY-GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESXXXXX 67
           ++TL ++     DP  GA+  P+Y T+T+ Q S  E+  ++Y+R+ NPTR A E      
Sbjct: 20  LATLAIHGGQSPDPSTGAVMPPIYATSTYAQSSPGEHQGFEYSRTHNPTRFAYERCVAAL 79
Query: 68  XXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT-GVVVKRVNT 126
                   F SGMAA + V  LL  G  +VA DDLYGGT RL  RV  +T G+    V+ 
Sbjct: 80  EGGTRAFAFASGMAATSTVMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDL 139
Query: 127 CDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRP 186
            D     +AI   TK+VW+E+PTNP  ++ DI  IA +A  HG L +VDN+  SP+L RP
Sbjct: 140 TDPAAFKAAIRADTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQRP 199
Query: 187 LELGADIVMHSATKFIAGHSDVMAGVLAVKGE--RLAKELYFLQNAEGSGLAPFDCWICL 244
           L LGAD+V+HSATK++ GHSD++ G+ AV G+   LA+++ FLQN+ G    PFD ++ L
Sbjct: 200 LSLGADLVVHSATKYLNGHSDMVGGI-AVVGDNAELAEQMAFLQNSIGGVQGPFDSFLAL 258
Query: 245 RGVKTMALRVEKQ 257
           RG+KT+ LR+   
Sbjct: 259 RGLKTLPLRMRAH 271

>pdb|1N8P|A Chain A, Crystal Structure Of Cystathionine Gamma-lyase From Yeast Length = 393

Iteration: 1
 Score =  196 bits (497), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 105/260 (40%), Positives = 152/260 (58%), Gaps = 6/260 (2%)
Query: 2   SVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPS-ATENGPYDYTRSGNPTRDAL 60
           +++E    +T  ++     D +G++  P+  + TFKQ S A   G Y+Y+RS NP R+ L
Sbjct: 1   TLQESDKFATKAIHAGEHVDVHGSVIEPISLSTTFKQSSPANPIGTYEYSRSQNPNRENL 60
Query: 61  ESXXXXXXXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
           E              F+SG A  A +   L  G   V+  D+YGGT R  ++V    GV 
Sbjct: 61  ERAVAALENAQYGLAFSSGSATTATILQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVE 120
Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA----LLLVDN 176
               N   L+++   I   TKLVW+E+PTNP  ++ DI+K+A++   H A    +L+VDN
Sbjct: 121 TSFTNDL-LNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDN 179
Query: 177 SIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA 236
           + +SP +S PL  GADIV+HSATK+I GHSDV+ GVLA   + L + L FLQNA G+  +
Sbjct: 180 TFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPS 239
Query: 237 PFDCWICLRGVKTMALRVEK 256
           PFD W+  RG+KT+ LRV +
Sbjct: 240 PFDAWLTHRGLKTLHLRVRQ 259

>pdb|3MKJ|A Chain A, Methionine Gamma-Lyase From Citrobacter Freundii With Pyridoximine-5'- Phosphate Length = 398

Iteration: 1
 Score =  192 bits (487), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 106/268 (39%), Positives = 156/268 (58%), Gaps = 11/268 (4%)
Query: 1   MSVEEEPGVSTLLMNFSNEFDPY-GALSTPLYQTATFKQPSAT--------ENGPYDYTR 51
           MS     G +T +++   + DP  GALSTP++QT+TF   SA         E   Y YTR
Sbjct: 1   MSDXRTYGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTR 60
Query: 52  SGNPTRDALESXXXXXXXXXXXXCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLL 110
            GNPT DALE                SG++A+   +  L   G+ IV+   +YG T   L
Sbjct: 61  LGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGXTHAFL 120
Query: 111 SRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA 170
           S   PK G+ V  V+    +E+ +A+ P TK+V++E+P NP   + DI  +A +AH  GA
Sbjct: 121 SHSMPKFGINVSFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGA 180
Query: 171 LLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-LQN 229
           LL+VDN+ MSP   +PL+LGADIV+HS TK+I GH DV+ G++  K E + +  +  L++
Sbjct: 181 LLVVDNTFMSPYXQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKD 240
Query: 230 AEGSGLAPFDCWICLRGVKTMALRVEKQ 257
             G  ++PF+ W+ LRGVKT+ +R+E+ 
Sbjct: 241 ITGGXMSPFNAWLTLRGVKTLGIRMERH 268

>pdb|3QHX|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb (Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes Length = 392

Iteration: 1
 Score =  191 bits (484), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 107/253 (42%), Positives = 149/253 (58%), Gaps = 3/253 (1%)
Query: 8   GVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSATE-NGPYDYTRSGNPTRDALESXXX 65
           G++T  ++     DP  GA++ P+Y ++TF Q       G Y+Y R+GNPTR ALE+   
Sbjct: 17  GLATRAIHSGYRPDPATGAVNAPIYASSTFAQDGVGGLRGGYEYARTGNPTRTALEAALA 76
Query: 66  XXXXXXXXXCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV 124
                     F+SGMAA   A+  +L  G+ +V  DD YGGT RL+ +V     V    V
Sbjct: 77  AVEDAAFGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPV 136
Query: 125 NTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS 184
              DLD V +AI P T+L+WVE+PTNP   I DI  IA++     A +LVDN+  SP L 
Sbjct: 137 ALADLDAVRAAIRPTTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPALQ 196
Query: 185 RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL 244
           +PL LGAD+V+HS T +I GHSDV+ G L    E L +   FLQN  G+   PFD ++ +
Sbjct: 197 QPLSLGADVVLHSTTXYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTM 256
Query: 245 RGVKTMALRVEKQ 257
           RG+KT+ LR+++ 
Sbjct: 257 RGLKTLVLRMQRH 269

>pdb|2RFV|A Chain A, High Resolution Structure Of L-Methionine Gamma-Lyase From Citrobacter Freundii Length = 398

Iteration: 1
 Score =  189 bits (479), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 105/268 (39%), Positives = 156/268 (58%), Gaps = 11/268 (4%)
Query: 1   MSVEEEPGVSTLLMNFSNEFDPY-GALSTPLYQTATFKQPSAT--------ENGPYDYTR 51
           MS     G +T +++   + DP  GALSTP++QT+TF   SA         E   Y YTR
Sbjct: 1   MSDXRTYGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTR 60
Query: 52  SGNPTRDALESXXXXXXXXXXXXCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLL 110
            GNPT DALE                SG++A+   +  L   G+ IV+   +YG T   L
Sbjct: 61  LGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFL 120
Query: 111 SRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA 170
           S   PK G+ V+ V+    +E+ +A+ P TK+V++E+P NP   + DI  +A +AH  GA
Sbjct: 121 SHSMPKFGINVRFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGA 180
Query: 171 LLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-LQN 229
           LL+VDN+ MSP   +PL+LGADIV+HS T +I GH DV+ G++  K E + +  +  L++
Sbjct: 181 LLVVDNTFMSPYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKD 240
Query: 230 AEGSGLAPFDCWICLRGVKTMALRVEKQ 257
             G  ++PF+ W+ LRGVKT+ +R+E+ 
Sbjct: 241 ITGGCMSPFNAWLTLRGVKTLGIRMERH 268

>pdb|3JWA|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From Citrobacter Freundii With Methionine Phosphinate Length = 398

Iteration: 1
 Score =  187 bits (476), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 105/268 (39%), Positives = 155/268 (57%), Gaps = 11/268 (4%)
Query: 1   MSVEEEPGVSTLLMNFSNEFDPY-GALSTPLYQTATFKQPSAT--------ENGPYDYTR 51
           MS     G +T +++   + DP  GALSTP++QT+TF   SA         E   Y YTR
Sbjct: 1   MSDXRTYGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTR 60
Query: 52  SGNPTRDALESXXXXXXXXXXXXCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLL 110
            GNPT DALE                SG++A+   +  L   G+ IV+   +YG T   L
Sbjct: 61  LGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFL 120
Query: 111 SRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA 170
           S   PK G+ V  V+    +E+ +A+ P TK+V++E+P NP   + DI  +A +AH  GA
Sbjct: 121 SHSMPKFGINVSFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGA 180
Query: 171 LLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-LQN 229
           LL+VDN+ MSP   +PL+LGADIV+HS T +I GH DV+ G++  K E + +  +  L++
Sbjct: 181 LLVVDNTFMSPYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKD 240
Query: 230 AEGSGLAPFDCWICLRGVKTMALRVEKQ 257
             G  ++PF+ W+ LRGVKT+ +R+E+ 
Sbjct: 241 ITGGCMSPFNAWLTLRGVKTLGIRMERH 268

>pdb|1Y4I|A Chain A, Crystal Structure Of Citrobacter Freundii L-Methionine-Lyase Length = 398

Iteration: 1
 Score =  187 bits (476), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 103/261 (39%), Positives = 154/261 (59%), Gaps = 11/261 (4%)
Query: 8   GVSTLLMNFSNEFDPY-GALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRD 58
           G +T +++   + DP  GALSTP++QT+TF   SA         E   Y YTR GNPT D
Sbjct: 8   GFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTD 67
Query: 59  ALESXXXXXXXXXXXXCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT 117
           ALE                SG++A+   +  L   G+ IV+   +YG T   LS   PK 
Sbjct: 68  ALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKF 127
Query: 118 GVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS 177
           G+ V+ V+    +E+ +A+ P TK+V++E+P NP   + DI  +A +AH  GALL+VDN+
Sbjct: 128 GINVRFVDAGKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNT 187
Query: 178 IMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-LQNAEGSGLA 236
            MSP   +PL+LGADIV+HS T +I GH DV+ G++  K E + +  +  L++  G  ++
Sbjct: 188 FMSPYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMS 247
Query: 237 PFDCWICLRGVKTMALRVEKQ 257
           PF+ W+ LRGVKT+ +R+E+ 
Sbjct: 248 PFNAWLTLRGVKTLGIRMERH 268

>pdb|3JW9|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From Citrobacter Freundii With S-Ethyl-Cysteine Length = 398

Iteration: 1
 Score =  187 bits (475), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 103/261 (39%), Positives = 153/261 (58%), Gaps = 11/261 (4%)
Query: 8   GVSTLLMNFSNEFDPY-GALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRD 58
           G +T +++   + DP  GALSTP++QT+TF   SA         E   Y YTR GNPT D
Sbjct: 8   GFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTD 67
Query: 59  ALESXXXXXXXXXXXXCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT 117
           ALE                SG++A+   +  L   G+ IV+   +YG T   LS   PK 
Sbjct: 68  ALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKF 127
Query: 118 GVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS 177
           G+ V  V+    +E+ +A+ P TK+V++E+P NP   + DI  +A +AH  GALL+VDN+
Sbjct: 128 GINVSFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNT 187
Query: 178 IMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-LQNAEGSGLA 236
            MSP   +PL+LGADIV+HS T +I GH DV+ G++  K E + +  +  L++  G  ++
Sbjct: 188 FMSPYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMS 247
Query: 237 PFDCWICLRGVKTMALRVEKQ 257
           PF+ W+ LRGVKT+ +R+E+ 
Sbjct: 248 PFNAWLTLRGVKTLGIRMERH 268

>pdb|1PG8|A Chain A, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase Length = 398

Iteration: 1
 Score =  168 bits (426), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 96/265 (36%), Positives = 153/265 (57%), Gaps = 17/265 (6%)
Query: 7   PGVSTLLMNFSNEFDPY---GALSTPLYQTATFKQPS--------ATENGPYDYTRSGNP 55
           PG +T  ++  + +DP    GAL  P+YQTATF  P+        A E   + Y+R  NP
Sbjct: 8   PGFATRAIH--HGYDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNP 65
Query: 56  TRDALESXXXXXXXXXXXXCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLSRVT 114
           T + LE+               SGM A+ +    LL  G+E++ G+ LYG T   L    
Sbjct: 66  TLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGI 125
Query: 115 PKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV 174
            + GV ++ V+  DL  + +A+ P T++++ ESP NP   + DI  +A++A  HGA ++V
Sbjct: 126 GEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVV 185
Query: 175 DNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF--LQNAEG 232
           DN+  +P L RPLELGAD+V+HSATK+++GH D+ AG++ V  + L   +    L++  G
Sbjct: 186 DNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIV-VGSQALVDRIRLQGLKDMTG 244
Query: 233 SGLAPFDCWICLRGVKTMALRVEKQ 257
           + L+P D  + +RG+KT+ LR+++ 
Sbjct: 245 AVLSPHDAALLMRGIKTLNLRMDRH 269

>pdb|3VK2|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From Pseudomonas Putida C116h Mutant. Length = 398

Iteration: 1
 Score =  167 bits (422), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 95/265 (35%), Positives = 152/265 (57%), Gaps = 17/265 (6%)
Query: 7   PGVSTLLMNFSNEFDPY---GALSTPLYQTATFKQPS--------ATENGPYDYTRSGNP 55
           PG +T  ++  + +DP    GAL  P+YQTATF  P+        A E   + Y+R  NP
Sbjct: 8   PGFATRAIH--HGYDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNP 65
Query: 56  TRDALESXXXXXXXXXXXXCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLSRVT 114
           T + LE+               SGM A+ +    LL  G+E++ G+ LYG T   L    
Sbjct: 66  TLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGHTFAFLHHGI 125
Query: 115 PKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV 174
            + GV ++ V+  DL  + +A+ P T++++ ESP NP   + DI  +A++A  HGA ++V
Sbjct: 126 GEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVV 185
Query: 175 DNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF--LQNAEG 232
           DN+  +P L RPLELGAD+V+HSAT +++GH D+ AG++ V  + L   +    L++  G
Sbjct: 186 DNTYCTPYLQRPLELGADLVVHSATXYLSGHGDITAGIV-VGSQALVDRIRLQGLKDMTG 244
Query: 233 SGLAPFDCWICLRGVKTMALRVEKQ 257
           + L+P D  + +RG+KT+ LR+++ 
Sbjct: 245 AVLSPHDAALLMRGIKTLNLRMDRH 269

>pdb|3AEJ|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica Methionine Gamma-Lyase 1 Tetramer Containing Michaelis Complex And Methionine- Pyridoxal-5'-Phosphate Length = 389

Iteration: 1
 Score =  166 bits (421), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 88/236 (37%), Positives = 135/236 (57%), Gaps = 9/236 (3%)
Query: 29  PLYQTATFKQPSATENGP--------YDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGM 80
           P++QT+TF   S  +           + Y+R GNPT +  E              F SGM
Sbjct: 25  PIFQTSTFCFDSTQQGADLFMGKGEGHIYSRLGNPTVEQFEEMVCSIEGAAGSAAFGSGM 84
Query: 81  AALAAVT-HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 139
            A+++ T   L  G+ ++AGD LYG T  L +   P+ G+ V  ++T D+++V +A  P 
Sbjct: 85  GAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKPN 144
Query: 140 TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 199
           TK+V++ESP NP  ++ DI+ IA + H  GA L+VD +  SP   +PLELGADI +HS +
Sbjct: 145 TKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALHSVS 204
Query: 200 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVE 255
           K+I GH DV+ GV + K       + F +   GS +AP D ++C RG+KT+ +R++
Sbjct: 205 KYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTLPIRMQ 260

>pdb|1GC0|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent L- Methionine Gamma-Lyase From Pseudomonas Putida Length = 398

Iteration: 1
 Score =  166 bits (420), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 95/265 (35%), Positives = 152/265 (57%), Gaps = 17/265 (6%)
Query: 7   PGVSTLLMNFSNEFDPY---GALSTPLYQTATFKQPS--------ATENGPYDYTRSGNP 55
           PG +T  ++  + +DP    GAL  P+YQTATF  P+        A E   + Y+R  NP
Sbjct: 8   PGFATRAIH--HGYDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNP 65
Query: 56  TRDALESXXXXXXXXXXXXCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLSRVT 114
           T + LE+               SGM A+ +    LL  G+E++ G+ LYG T   L    
Sbjct: 66  TLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGI 125
Query: 115 PKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV 174
            + GV ++ V+  DL  + +A+ P T++++ ESP NP   + DI  +A++A  HGA ++V
Sbjct: 126 GEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVV 185
Query: 175 DNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF--LQNAEG 232
           DN+  +P L RPLELGAD+V+HSAT +++GH D+ AG++ V  + L   +    L++  G
Sbjct: 186 DNTYCTPYLQRPLELGADLVVHSATXYLSGHGDITAGIV-VGSQALVDRIRLQGLKDMTG 244
Query: 233 SGLAPFDCWICLRGVKTMALRVEKQ 257
           + L+P D  + +RG+KT+ LR+++ 
Sbjct: 245 AVLSPHDAALLMRGIKTLNLRMDRH 269

>pdb|3ACZ|A Chain A, Crystal Structure Of Entamoeba Histolytica Methionine Gamma-Lyase 1 Length = 389

Iteration: 1
 Score =  164 bits (415), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 87/236 (36%), Positives = 134/236 (56%), Gaps = 9/236 (3%)
Query: 29  PLYQTATFKQPSATENGP--------YDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGM 80
           P++QT+TF   S  +           + Y+R GNPT +  E              F SGM
Sbjct: 25  PIFQTSTFCFDSTQQGADLFMGKGEGHIYSRLGNPTVEQFEEMVCSIEGAAGSAAFGSGM 84
Query: 81  AALAAVT-HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 139
            A+++ T   L  G+ ++AGD LYG T  L +   P+ G+ V  ++T D+++V +A  P 
Sbjct: 85  GAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKPN 144
Query: 140 TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 199
           TK+V++ESP NP  ++ DI+ IA + H  GA L+VD +  SP   +PLELGADI +HS +
Sbjct: 145 TKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALHSVS 204
Query: 200 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVE 255
            +I GH DV+ GV + K       + F +   GS +AP D ++C RG+KT+ +R++
Sbjct: 205 XYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTLPIRMQ 260

>pdb|1E5E|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In Complex With Propargylglycine Length = 404

Iteration: 1
 Score =  158 bits (399), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 87/259 (33%), Positives = 147/259 (56%), Gaps = 11/259 (4%)
Query: 10  STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGP--------YDYTRSGNPTRDALE 61
           +T  ++ + + D +GA   P+YQT+TF   +  + G         Y YTR GNPT   LE
Sbjct: 9   ATACIHANPQKDQFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNLE 68
Query: 62  SXXXXXXXXXXXXCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
                          +SGM A+AA V  +L  G+ +++ + LYG T  L      K G+ 
Sbjct: 69  GKIAFLEKTEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQ 128
Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH-GALLLVDNSIM 179
           V  +NT    EV   + P TK+V+ E+P NP  +I D+ ++ + AH+  G L++ DN+  
Sbjct: 129 VDFINTAIPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFC 188
Query: 180 SPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQNAEGSGLAPF 238
           SP+++ P++ G D+V+HSATK+I GH+DV+AG++  K + L +  +  +++  GS ++P 
Sbjct: 189 SPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPH 248
Query: 239 DCWICLRGVKTMALRVEKQ 257
           D W+  RG+ T+ +R++ +
Sbjct: 249 DAWLITRGLSTLNIRMKAE 267

>pdb|1CS1|A Chain A, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli Length = 386

Iteration: 1
 Score =  154 bits (390), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 88/242 (36%), Positives = 135/242 (55%), Gaps = 1/242 (0%)
Query: 18  NEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFT 77
           N+ + YG +  P++ ++T+      E   +DY+R GNPTRD ++                
Sbjct: 15  NDDEQYGCVVPPIHLSSTYNFTGFNEPRAHDYSRRGNPTRDVVQRALAELEGGAGAVLTN 74
Query: 78  SGMAALAAVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAI 136
           +GM+A+  VT + L  G+ +VA  D YGG+ RL   +  +    V  V+  D   + +A+
Sbjct: 75  TGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAAL 134
Query: 137 GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMH 196
               KLV VESP+NP  ++ DI KI  +A   GA+ +VDN+ +SP L  PL LGAD+V+H
Sbjct: 135 AEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPLALGADLVLH 194
Query: 197 SATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEK 256
           S T ++ GHSDV+AGV+  K   +  EL +  N  G     FD ++ LRG++T+  R+E 
Sbjct: 195 SCTXYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLVPRMEL 254
Query: 257 QQ 258
            Q
Sbjct: 255 AQ 256

>pdb|1QGN|A Chain A, Cystathionine Gamma-Synthase From Nicotiana Tabacum Length = 445

Iteration: 1
 Score =  127 bits (318), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 124/244 (50%), Gaps = 11/244 (4%)
Query: 25  ALSTPLYQTATFKQPSATE--------NGPYDYTRSGNPTRDALESXXXXXXXXXXXXCF 76
           A++TP+  T+ +     +E           ++Y R GNPT   LE               
Sbjct: 76  AITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEGAESTLLM 135
Query: 77  TSGM-AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASA 135
            SGM A+   +  L+  G  IV   D Y  T   +  + PK G+    ++  D+  +  A
Sbjct: 136 ASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGALELA 195
Query: 136 IG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIV 194
           +      L + ESPTNP  +  DI  ++++ H  GAL+ +D +  +P+  + L LGAD+V
Sbjct: 196 LNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLV 255
Query: 195 MHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRV 254
           +HSATKF+ GH+DV+AG ++    +L  E+  L +  G  L P   ++ +RG+KT+ LRV
Sbjct: 256 LHSATKFLGGHNDVLAGCIS-GPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTLHLRV 314
Query: 255 EKQQ 258
           ++Q 
Sbjct: 315 QQQN 318

>pdb|3NDN|A Chain A, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase From Mycobacterium Tuberculosis Covalently Bound To Pyridoxal-5- Length = 414

Iteration: 1
 Score =  125 bits (313), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 120/228 (52%), Gaps = 2/228 (0%)
Query: 30  LYQTATFKQPS-ATENGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAAL-AAVT 87
           +Y +A   + S A E   Y Y+R GNPT    E                SGMAA+  ++ 
Sbjct: 55  VYGSAAVAEKSFAGELDHYVYSRYGNPTVSVFEERLRLIEGAPAAFATASGMAAVFTSLG 114
Query: 88  HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVES 147
            LLG G+ +VA   L+G    + S + P+ GV    V+  DL +   A+   T+ V+ E+
Sbjct: 115 ALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGDDLSQWERALSVPTQAVFFET 174
Query: 148 PTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSD 207
           P+NP Q + DI  + E+AHA GA +++DN   +P+L +   LG D+V++S T  I G   
Sbjct: 175 PSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQGFPLGVDVVVYSGTXHIDGQGR 234
Query: 208 VMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVE 255
           V+ G +    E +   +  L    G  ++ F+ W+ L+G++T+A+RV+
Sbjct: 235 VLGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLETLAIRVQ 282

>pdb|1PFF|A Chain A, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At 1.8 Angstroms Length = 331

Iteration: 1
 Score =  120 bits (302), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 109/182 (59%), Gaps = 3/182 (1%)
Query: 78  SGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAI 136
           SGM A+AA V   L  G+ +++ D LYG T  L      K GV V  ++      +   +
Sbjct: 21  SGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNIEKHL 80
Query: 137 GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALL-LVDNSIMSPVLSRPLELGADIVM 195
            P T++V+ E+P NP  ++ DI    + A     +L +VDN+  SP+L+ PL+LG DIV+
Sbjct: 81  KPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPLDLGVDIVV 140
Query: 196 HSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQNAEGSGLAPFDCWICLRGVKTMALRV 254
           HSATK+I GH+DV+AG++  + + +AK +   +++  G+ ++P D W+  RG  T+ +RV
Sbjct: 141 HSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDMRV 200
Query: 255 EK 256
           ++
Sbjct: 201 KR 202

>pdb|3RI6|A Chain A, A Novel Mechanism Of Sulfur Transfer Catalyzed By O-Acetylhomoserine Sulfhydrylase In Methionine Biosynthetic Pathway Of Wolinella Succinogenes Length = 430

Iteration: 1
 Score =  110 bits (275), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 84/265 (31%), Positives = 129/265 (48%), Gaps = 29/265 (10%)
Query: 21  DPYGALSTPLYQTATFKQPSATENGP--------YDYTRSGNPTRDALESXXXXXXXXXX 72
           D +GAL TP+Y  A F+  ++ E           + Y+RS NPT + LE           
Sbjct: 40  DVHGALRTPVYDNAAFEFENSDEIAQVSLGRALGHVYSRSSNPTVEDLEQRLKNLTGALG 99
Query: 73  XXCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDE 131
                SGMAA++ A+  L   G+ +V  D L+G T  L  +  P  G+ V+ V+  D   
Sbjct: 100 VLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLA 159
Query: 132 VASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGA 191
           V  A    TKL+++E+ +NP+ Q+ D+  ++++ HA G  L+VD ++  P L     LG 
Sbjct: 160 VEHACDETTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYLLEAKRLGV 219
Query: 192 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL-------------YFLQNAE------- 231
           DI + S+TKFI+G    + GVL   G    K L              FL  A        
Sbjct: 220 DIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNL 279
Query: 232 GSGLAPFDCWICLRGVKTMALRVEK 256
           G  L+P + ++   G++TMALR+E+
Sbjct: 280 GPSLSPHNAYLQSLGLETMALRIER 304

>pdb|2CTZ|A Chain A, Crystal Structure Of O-Acetyl Homoserine Sulfhydrylase From Thermus Thermophilus Hb8 Length = 421

Iteration: 1
 Score =  103 bits (257), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/271 (30%), Positives = 119/271 (43%), Gaps = 42/271 (15%)
Query: 29  PLYQTAT--FKQPSATEN------GPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGM 80
           P+Y T +  FK P    N          Y+R  NPT D LE                SG 
Sbjct: 24  PIYPTTSYVFKSPEHAANLFALKEFGNIYSRIMNPTVDVLEKRLAALEGGKAALATASGH 83
Query: 81  AA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDL-DEVASAIGP 138
           AA   A+T L   G+ IV+  +LYGGT         + G+ V+  +  +  +E  +    
Sbjct: 84  AAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREERPEEFLALTDE 143
Query: 139 WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSI-MSPVLSRPLELGADIVMHS 197
            T+  WVES  NP   I D+  +A+ A   G  L+VDN+  M   L RPL  GA +V HS
Sbjct: 144 KTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAALVTHS 203
Query: 198 ATKFIAGHSDVMAGVL---------------------AVKGERLAK---ELYFLQNA--- 230
            TK++ GH  V+AG +                        G RL +   EL F+  A   
Sbjct: 204 LTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVD 263
Query: 231 ----EGSGLAPFDCWICLRGVKTMALRVEKQ 257
               +G  L PF+ W+ L G++T++LR E+ 
Sbjct: 264 GLRDQGQALGPFEAWVVLLGMETLSLRAERH 294

>pdb|2CB1|A Chain A, Crystal Structure Of O-Actetyl Homoserine Sulfhydrylase From Thermus Thermophilus Hb8,Oah2 Length = 412

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/273 (30%), Positives = 125/273 (45%), Gaps = 39/273 (14%)
Query: 21  DPYGALSTPLYQTATF--------KQPSATENGPYDYTRSGNPTRDALESXXXXXXXXXX 72
           DP+GA+  P+Y  A +        ++  AT  G Y Y R  +PT  ALE           
Sbjct: 15  DPHGAVGLPIYAVAAYGFKTLEEGQERFATGEG-YVYARQKDPTAKALEERLKALEGALE 73
Query: 73  XXCFTSGMAALAAVTHLLGT-GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDE 131
                SG AA  A    L   G+E+VA   L+G T  L  +V    GV V+ V+  + + 
Sbjct: 74  AVVLASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDP-EPEA 132
Query: 132 VASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSI-MSPVLSRPLELG 190
           V  A+   T+ V+VE+  NP   + D+  +A +A   G  L+VDN+   +  L RPL  G
Sbjct: 133 VREALSAKTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALCRPLAWG 192
Query: 191 ADIVMHSATKFIAGHSDVMAG-VLAVKGERLAKELYFLQ--------------------- 228
           A +V+ S T + +GH  V+ G VL+ + E       FLQ                     
Sbjct: 193 AHVVVESLTXWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERV 252
Query: 229 -----NAEGSGLAPFDCWICLRGVKTMALRVEK 256
                +  G  L+PF+ ++  +G++T+ALRV +
Sbjct: 253 RTLGLSLCGMALSPFNAYLLFQGLETVALRVAR 285

>pdb|1CL2|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In Complex With Aminoethoxyvinylglycine Length = 395

Iteration: 1
 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 102/221 (46%), Gaps = 10/221 (4%)
Query: 44  NGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALA-AVTHLLGTGEEIVAGDDL 102
           NG   Y R G  T  +L+              F  G AA+A ++   +  G+ ++  +  
Sbjct: 51  NGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTA 110
Query: 103 YGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIA 162
           Y  +    S++  K GV     +     ++   + P TK+V++ESP +   ++ D+  I 
Sbjct: 111 YEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIV 170
Query: 163 EMAHA--HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG--- 217
               +    A++++DN+  + VL + L+ G D+ + +ATK++ GHSD M G         
Sbjct: 171 AAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCW 230
Query: 218 ERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ 258
           E+L +  Y +    G  +     +I  RG++T+ +R+ +  
Sbjct: 231 EQLRENAYLM----GQMVDADTAYITSRGLRTLGVRLRQHH 267

>pdb|2FQ6|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In Complex With N-Hydrazinocarbonylmethyl-2-Trifluoromethyl-Benzamide Length = 415

Iteration: 1
 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 102/221 (46%), Gaps = 10/221 (4%)
Query: 44  NGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALA-AVTHLLGTGEEIVAGDDL 102
           NG   Y R G  T  +L+              F  G AA+A ++   +  G+ ++  +  
Sbjct: 71  NGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTA 130
Query: 103 YGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIA 162
           Y  +    S++  K GV     +     ++   + P TK+V++ESP +   ++ D+  I 
Sbjct: 131 YEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIV 190
Query: 163 EMAHA--HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG--- 217
               +    A++++DN+  + VL + L+ G D+ + +ATK++ GHSD M G         
Sbjct: 191 AAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCW 250
Query: 218 ERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ 258
           E+L +  Y +    G  +     +I  RG++T+ +R+ +  
Sbjct: 251 EQLRENAYLM----GQMVDADTAYITSRGLRTLGVRLRQHH 287

>pdb|1CL1|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli Length = 395

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 101/221 (45%), Gaps = 10/221 (4%)
Query: 44  NGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALA-AVTHLLGTGEEIVAGDDL 102
           NG   Y R G  T  +L+              F  G AA+A ++   +  G+ ++  +  
Sbjct: 51  NGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTA 110
Query: 103 YGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIA 162
           Y  +    S++  K GV     +     ++   + P TK+V++ESP +   ++ D+  I 
Sbjct: 111 YEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIV 170
Query: 163 EMAHA--HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG--- 217
               +    A++++DN+  + VL + L+ G D+ + +AT ++ GHSD M G         
Sbjct: 171 AAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATXYLVGHSDAMIGTAVCNARCW 230
Query: 218 ERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ 258
           E+L +  Y +    G  +     +I  RG++T+ +R+ +  
Sbjct: 231 EQLRENAYLM----GQMVDADTAYITSRGLRTLGVRLRQHH 267

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	265
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	1e-149
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	1e-136
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	1e-135
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	1e-129
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	1e-127
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	1e-127
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	1e-122
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	1e-117
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	1e-117
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	1e-116
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	1e-115
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	1e-111
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	1e-107
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	2e-95
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	4e-70
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	9e-69
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	3e-66
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	3e-63
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	9e-63
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	3e-58
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	1e-56
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	2e-48
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	1e-08
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	6e-08
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	3e-07
3pj0_A	359	LMO0305 protein; structural genomics, joint center	7e-07
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	1e-06
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	3e-06
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	3e-06
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	4e-06
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	6e-06
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	1e-05
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	2e-05
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	2e-05
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	2e-05
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	3e-05
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	3e-05
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	5e-05
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	6e-05
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	1e-04
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	1e-04
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	1e-04
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	2e-04
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	2e-04
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	3e-04
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	3e-04
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	3e-04
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	3e-04
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	4e-04
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	5e-04
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	5e-04
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	5e-04
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	6e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	7e-04
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	8e-04

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 Length = 464

 Score =  422 bits (1088), Expect = e-149
 Identities = 219/258 (84%), Positives = 243/258 (94%)

Query: 1   MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDAL 60
           M+++EE  VSTLL+N  N+FDP+ A+STPLYQTATFKQPSA ENGPYDYTRSGNPTRDAL
Sbjct: 79  MNIKEEASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDAL 138

Query: 61  ESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
           ESLLAKLDKADRA CFTSGMAAL+AVTHL+  GEEIVAGDD+YGG+DRLLS+V P++GVV
Sbjct: 139 ESLLAKLDKADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVV 198

Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS 180
           VKRVNT  LDEVA+AIGP TKLVW+ESPTNPRQQI DIRKI+EMAHA GAL+LVDNSIMS
Sbjct: 199 VKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMS 258

Query: 181 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC 240
           PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDC
Sbjct: 259 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDC 318

Query: 241 WICLRGVKTMALRVEKQQ 258
           W+CLRG+KTMALR+EKQQ
Sbjct: 319 WLCLRGIKTMALRIEKQQ 336

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 Length = 393

 Score =  388 bits (998), Expect = e-136
 Identities = 109/262 (41%), Positives = 158/262 (60%), Gaps = 6/262 (2%)

Query: 2   SVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPS-ATENGPYDYTRSGNPTRDAL 60
           +++E    +T  ++     D +G++  P+  + TFKQ S A   G Y+Y+RS NP R+ L
Sbjct: 1   TLQESDKFATKAIHAGEHVDVHGSVIEPISLSTTFKQSSPANPIGTYEYSRSQNPNRENL 60

Query: 61  ESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
           E  +A L+ A   L F+SG A  A +   L  G   V+  D+YGGT R  ++V    GV 
Sbjct: 61  ERAVAALENAQYGLAFSSGSATTATILQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVE 120

Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA----LLLVDN 176
               N   L+++   I   TKLVW+E+PTNP  ++ DI+K+A++   H A    +L+VDN
Sbjct: 121 TSFTND-LLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDN 179

Query: 177 SIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA 236
           + +SP +S PL  GADIV+HSATK+I GHSDV+ GVLA   + L + L FLQNA G+  +
Sbjct: 180 TFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPS 239

Query: 237 PFDCWICLRGVKTMALRVEKQQ 258
           PFD W+  RG+KT+ LRV +  
Sbjct: 240 PFDAWLTHRGLKTLHLRVRQAA 261

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B Length = 403

 Score =  386 bits (995), Expect = e-135
 Identities = 109/257 (42%), Positives = 164/257 (63%), Gaps = 3/257 (1%)

Query: 5   EEPGVSTLLMNFSNEFDP--YGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALES 62
                +T  ++   + +     A+  P+  + TFKQ +  ++  ++Y+RSGNPTR+ LE 
Sbjct: 15  HFQHFATQAIHVGQDPEQWTSRAVVPPISLSTTFKQGAPGQHSGFEYSRSGNPTRNCLEK 74

Query: 63  LLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVK 122
            +A LD A   L F SG+AA   +THLL  G++I+  DD+YGGT+R   +V  + G+ + 
Sbjct: 75  AVAALDGAKYCLAFASGLAATVTITHLLKAGDQIICMDDVYGGTNRYFRQVASEFGLKIS 134

Query: 123 RVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLL-VDNSIMSP 181
            V+   +  + +AI P TKLVW+E+PTNP Q++ DI   A + H HG ++L VDN+ MSP
Sbjct: 135 FVDCSKIKLLEAAITPETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSP 194

Query: 182 VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCW 241
              RPL LGADI M+SATK++ GHSDV+ G+++V  E L   L FLQN+ G+  +P DC+
Sbjct: 195 YFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCY 254

Query: 242 ICLRGVKTMALRVEKQQ 258
           +C RG+KT+ +R+EK  
Sbjct: 255 LCNRGLKTLHVRMEKHF 271

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 Length = 386

 Score =  370 bits (953), Expect = e-129
 Identities = 94/253 (37%), Positives = 145/253 (57%), Gaps = 2/253 (0%)

Query: 8   GVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAK 66
             +T+ +      D  YG +  P++ ++T+      E   +DY+R GNPTRD ++  LA+
Sbjct: 4   KQATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNEPRAHDYSRRGNPTRDVVQRALAE 63

Query: 67  LDKADRALCFTSGMAALAAVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN 125
           L+    A+   +GM+A+  VT + L  G+ +VA  D YGG+ RL   +  +    V  V+
Sbjct: 64  LEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVD 123

Query: 126 TCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR 185
             D   + +A+    KLV VESP+NP  ++ DI KI  +A   GA+ +VDN+ +SP L  
Sbjct: 124 QGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQN 183

Query: 186 PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR 245
           PL LGAD+V+HS TK++ GHSDV+AGV+  K   +  EL +  N  G     FD ++ LR
Sbjct: 184 PLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLR 243

Query: 246 GVKTMALRVEKQQ 258
           G++T+  R+E  Q
Sbjct: 244 GLRTLVPRMELAQ 256

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} PDB: 3e6g_A* 3nnp_A* Length = 400

 Score =  367 bits (944), Expect = e-127
 Identities = 113/258 (43%), Positives = 160/258 (62%), Gaps = 3/258 (1%)

Query: 4   EEEPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALES 62
           +    ++TL ++     DP  GA+  P+Y T+T+ Q S  E+  ++Y+R+ NPTR A E 
Sbjct: 15  DRALSLATLAIHGGQSPDPSTGAVMPPIYATSTYAQSSPGEHQGFEYSRTHNPTRFAYER 74

Query: 63  LLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT-GVVV 121
            +A L+   RA  F SGMAA + V  LL  G  +VA DDLYGGT RL  RV  +T G+  
Sbjct: 75  CVAALEGGTRAFAFASGMAATSTVMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDF 134

Query: 122 KRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSP 181
             V+  D     +AI   TK+VW+E+PTNP  ++ DI  IA +A  HG L +VDN+  SP
Sbjct: 135 SFVDLTDPAAFKAAIRADTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASP 194

Query: 182 VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVK-GERLAKELYFLQNAEGSGLAPFDC 240
           +L RPL LGAD+V+HSATK++ GHSD++ G+  V     LA+++ FLQN+ G    PFD 
Sbjct: 195 MLQRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDS 254

Query: 241 WICLRGVKTMALRVEKQQ 258
           ++ LRG+KT+ LR+    
Sbjct: 255 FLALRGLKTLPLRMRAHC 272

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} PDB: 3qi6_A* Length = 392

 Score =  366 bits (941), Expect = e-127
 Identities = 110/258 (42%), Positives = 153/258 (59%), Gaps = 3/258 (1%)

Query: 4   EEEPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPS-ATENGPYDYTRSGNPTRDALE 61
               G++T  ++     DP  GA++ P+Y ++TF Q       G Y+Y R+GNPTR ALE
Sbjct: 13  HRFAGLATRAIHSGYRPDPATGAVNAPIYASSTFAQDGVGGLRGGYEYARTGNPTRTALE 72

Query: 62  SLLAKLDKADRALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
           + LA ++ A     F+SGMAA       +L  G+ +V  DD YGGT RL+ +V     V 
Sbjct: 73  AALAAVEDAAFGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVE 132

Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS 180
              V   DLD V +AI P T+L+WVE+PTNP   I DI  IA++     A +LVDN+  S
Sbjct: 133 YTPVALADLDAVRAAIRPTTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFAS 192

Query: 181 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC 240
           P L +PL LGAD+V+HS TK+I GHSDV+ G L    E L +   FLQN  G+   PFD 
Sbjct: 193 PALQQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDA 252

Query: 241 WICLRGVKTMALRVEKQQ 258
           ++ +RG+KT+ LR+++  
Sbjct: 253 YLTMRGLKTLVLRMQRHS 270

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* Length = 389

 Score =  352 bits (907), Expect = e-122
 Identities = 89/248 (35%), Positives = 142/248 (57%), Gaps = 10/248 (4%)

Query: 21  DP-YGALSTPLYQTATFKQPSATENGP--------YDYTRSGNPTRDALESLLAKLDKAD 71
           D    + + P++QT+TF   S  +           + Y+R GNPT +  E ++  ++ A 
Sbjct: 16  DHVLHSHAYPIFQTSTFCFDSTQQGADLFMGKGEGHIYSRLGNPTVEQFEEMVCSIEGAA 75

Query: 72  RALCFTSGMAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLD 130
            +  F SGM A  ++    L  G+ ++AGD LYG T  L +   P+ G+ V  ++T D++
Sbjct: 76  GSAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVE 135

Query: 131 EVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELG 190
           +V +A  P TK+V++ESP NP  ++ DI+ IA + H  GA L+VD +  SP   +PLELG
Sbjct: 136 KVKAAWKPNTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLELG 195

Query: 191 ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM 250
           ADI +HS +K+I GH DV+ GV + K       + F +   GS +AP D ++C RG+KT+
Sbjct: 196 ADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTL 255

Query: 251 ALRVEKQQ 258
            +R++   
Sbjct: 256 PIRMQIHM 263

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* Length = 398

 Score =  340 bits (875), Expect = e-117
 Identities = 94/266 (35%), Positives = 154/266 (57%), Gaps = 11/266 (4%)

Query: 4   EEEPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGP--------YDYTRSGN 54
            + PG +T  ++   +     GAL  P+YQTATF  P+              + Y+R  N
Sbjct: 5   NKLPGFATRAIHHGYDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISN 64

Query: 55  PTRDALESLLAKLDKADRALCFTSGMAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRV 113
           PT + LE+ +A L+  +  L   SGM A  + +  LL  G+E++ G+ LYG T   L   
Sbjct: 65  PTLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHG 124

Query: 114 TPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLL 173
             + GV ++ V+  DL  + +A+ P T++++ ESP NP   + DI  +A++A  HGA ++
Sbjct: 125 IGEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVV 184

Query: 174 VDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQNAEG 232
           VDN+  +P L RPLELGAD+V+HSATK+++GH D+ AG++      + +  L  L++  G
Sbjct: 185 VDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTG 244

Query: 233 SGLAPFDCWICLRGVKTMALRVEKQQ 258
           + L+P D  + +RG+KT+ LR+++  
Sbjct: 245 AVLSPHDAALLMRGIKTLNLRMDRHC 270

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* Length = 404

 Score =  340 bits (874), Expect = e-117
 Identities = 91/269 (33%), Positives = 155/269 (57%), Gaps = 12/269 (4%)

Query: 1   MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGP--------YDYTRS 52
           M+  E    +T  ++ + + D +GA   P+YQT+TF   +  + G         Y YTR 
Sbjct: 1   MA-HERMTPATACIHANPQKDQFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRL 59

Query: 53  GNPTRDALESLLAKLDKADRALCFTSGMAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLS 111
           GNPT   LE  +A L+K +  +  +SGM A  A V  +L  G+ +++ + LYG T  L  
Sbjct: 60  GNPTVSNLEGKIAFLEKTEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFE 119

Query: 112 RVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA-HGA 170
               K G+ V  +NT    EV   + P TK+V+ E+P NP  +I D+ ++ + AH+  G 
Sbjct: 120 HALTKFGIQVDFINTAIPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGV 179

Query: 171 LLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQN 229
           L++ DN+  SP+++ P++ G D+V+HSATK+I GH+DV+AG++  K + L +  +  +++
Sbjct: 180 LVIADNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKD 239

Query: 230 AEGSGLAPFDCWICLRGVKTMALRVEKQQ 258
             GS ++P D W+  RG+ T+ +R++ + 
Sbjct: 240 ITGSVISPHDAWLITRGLSTLNIRMKAES 268

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* Length = 445

 Score =  339 bits (872), Expect = e-116
 Identities = 79/268 (29%), Positives = 133/268 (49%), Gaps = 14/268 (5%)

Query: 4   EEEPGVSTLLMNFSNEFDP---YGALSTPLYQTATFKQPSATENGP--------YDYTRS 52
                  ++ ++            A++TP+  T+ +     +E           ++Y R 
Sbjct: 52  SFLNSDGSVAIHAGERLGRGIVTDAITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGRY 111

Query: 53  GNPTRDALESLLAKLDKADRALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLS 111
           GNPT   LE  ++ L+ A+  L   SGM A    +  L+  G  IV   D Y  T   + 
Sbjct: 112 GNPTTVVLEEKISALEGAESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIE 171

Query: 112 RVTPKTGVVVKRVNTCDLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA 170
            + PK G+    ++  D+  +  A+      L + ESPTNP  +  DI  ++++ H  GA
Sbjct: 172 TILPKMGITATVIDPADVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGA 231

Query: 171 LLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA 230
           L+ +D +  +P+  + L LGAD+V+HSATKF+ GH+DV+AG +     +L  E+  L + 
Sbjct: 232 LVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCI-SGPLKLVSEIRNLHHI 290

Query: 231 EGSGLAPFDCWICLRGVKTMALRVEKQQ 258
            G  L P   ++ +RG+KT+ LRV++Q 
Sbjct: 291 LGGALNPNAAYLIIRGMKTLHLRVQQQN 318

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* Length = 398

 Score =  335 bits (862), Expect = e-115
 Identities = 109/269 (40%), Positives = 162/269 (60%), Gaps = 11/269 (4%)

Query: 1   MSVEEEPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGP--------YDYTR 51
           MS     G +T +++   + DP  GALSTP++QT+TF   SA +           Y YTR
Sbjct: 1   MSDCRTYGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTR 60

Query: 52  SGNPTRDALESLLAKLDKADRALCFTSGMAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLL 110
            GNPT DALE  LA L++ +  L   SG++A    +  L   G+ IV+   +YG T   L
Sbjct: 61  LGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFL 120

Query: 111 SRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA 170
           S   PK G+ V+ V+    +E+ +A+ P TK+V++E+P NP   + DI  +A +AH  GA
Sbjct: 121 SHSMPKFGINVRFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGA 180

Query: 171 LLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQN 229
           LL+VDN+ MSP   +PL+LGADIV+HS TK+I GH DV+ G++  K E + +     L++
Sbjct: 181 LLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKD 240

Query: 230 AEGSGLAPFDCWICLRGVKTMALRVEKQQ 258
             G  ++PF+ W+ LRGVKT+ +R+E+  
Sbjct: 241 ITGGCMSPFNAWLTLRGVKTLGIRMERHC 269

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} Length = 414

 Score =  326 bits (837), Expect = e-111
 Identities = 78/246 (31%), Positives = 127/246 (51%), Gaps = 9/246 (3%)

Query: 21  DPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADR 72
             +   +  +Y T+ +   SA         E   Y Y+R GNPT    E  L  ++ A  
Sbjct: 39  SGFEETAEAMYLTSGYVYGSAAVAEKSFAGELDHYVYSRYGNPTVSVFEERLRLIEGAPA 98

Query: 73  ALCFTSGMAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDE 131
           A    SGMAA   ++  LLG G+ +VA   L+G    + S + P+ GV    V+  DL +
Sbjct: 99  AFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGDDLSQ 158

Query: 132 VASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGA 191
              A+   T+ V+ E+P+NP Q + DI  + E+AHA GA +++DN   +P+L +   LG 
Sbjct: 159 WERALSVPTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQGFPLGV 218

Query: 192 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA 251
           D+V++S TK I G   V+ G +    E +   +  L    G  ++ F+ W+ L+G++T+A
Sbjct: 219 DVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLETLA 278

Query: 252 LRVEKQ 257
           +RV+  
Sbjct: 279 IRVQHS 284

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* Length = 415

 Score =  315 bits (810), Expect = e-107
 Identities = 61/266 (22%), Positives = 123/266 (46%), Gaps = 14/266 (5%)

Query: 6   EPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSA---------TENGPYDYTRSGNP 55
           +  + T L+N         GA+++ + + ++    S            NG   Y R G  
Sbjct: 23  DKKLDTQLVNAGRSKKYTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTL 82

Query: 56  TRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVT 114
           T  +L+  + +L+     + F  G AA+A ++   +  G+ ++  +  Y  +    S++ 
Sbjct: 83  THFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKIL 142

Query: 115 PKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA--HGALL 172
            K GV     +     ++   + P TK+V++ESP +   ++ D+  I     +    A++
Sbjct: 143 SKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAII 202

Query: 173 LVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG 232
           ++DN+  + VL + L+ G D+ + +ATK++ GHSD M G  AV   R  ++L       G
Sbjct: 203 MIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGT-AVCNARCWEQLRENAYLMG 261

Query: 233 SGLAPFDCWICLRGVKTMALRVEKQQ 258
             +     +I  RG++T+ +R+ +  
Sbjct: 262 QMVDADTAYITSRGLRTLGVRLRQHH 287

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 Length = 331

 Score =  282 bits (724), Expect = 2e-95
 Identities = 72/203 (35%), Positives = 119/203 (58%), Gaps = 3/203 (1%)

Query: 59  ALESLLAKLDKADRALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT 117
           ALE  +AKL+ A+      SGM A+ A+V   L  G+ +++ D LYG T  L      K 
Sbjct: 2   ALEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKF 61

Query: 118 GVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAH-AHGALLLVDN 176
           GV V  ++      +   + P T++V+ E+P NP  ++ DI    + A      L++VDN
Sbjct: 62  GVEVDFIDMAVPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDN 121

Query: 177 SIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQNAEGSGL 235
           +  SP+L+ PL+LG DIV+HSATK+I GH+DV+AG++  + + +AK +   +++  G+ +
Sbjct: 122 TFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAII 181

Query: 236 APFDCWICLRGVKTMALRVEKQQ 258
           +P D W+  RG  T+ +RV++  
Sbjct: 182 SPHDAWLITRGTLTLDMRVKRAA 204

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} Length = 427

 Score =  221 bits (564), Expect = 4e-70
 Identities = 49/259 (18%), Positives = 91/259 (35%), Gaps = 31/259 (11%)

Query: 29  PLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL-AAVT 87
             +Q     +   T +  Y Y   G  + D + + +   + A     F +G  A+ AA+ 
Sbjct: 51  KAFQEERISESHFTNSSGYGYNDIGRDSLDRVYANIFNTESAFVRPHFVNGTHAIGAALF 110

Query: 88  HLLGTGEEIVA--------GDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLDEVASA 135
             L   + +++          D+ G  D        + GV  K V+      D++ V   
Sbjct: 111 GNLRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDLKDGKVDINTVKEE 170

Query: 136 IGP--WTKLVWVESPTN----PRQQICDIRKIAEMAHA--HGALLLVDNSIMSPVLSR-P 186
           +      KL+ ++  T        +I +I +I +         ++ VDN     V  + P
Sbjct: 171 LKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFVEEKEP 230

Query: 187 LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--AEGSGLAPFDCW--- 241
            ++GADI+  S  K I G      G +A K E + +  + +      G   + F      
Sbjct: 231 TDVGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATFRVTVPGIGGECGSTFGVMRSL 290

Query: 242 ----ICLRGVKTMALRVEK 256
                    V   A++   
Sbjct: 291 YEGLFMAPHVTIEAVKGAV 309

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} Length = 431

 Score =  217 bits (555), Expect = 9e-69
 Identities = 41/252 (16%), Positives = 79/252 (31%), Gaps = 25/252 (9%)

Query: 31  YQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL 89
           +               Y Y   G  T + + + +   +         SG  A++ A+  +
Sbjct: 44  FGKHKISDSHFIPTTGYGYDDIGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGI 103

Query: 90  LGTGEEIVAGDDLYGGTDRLLSRVTPK------------TGVVVKRVNTCDLDEVASAIG 137
           L  G+E++        T   +  V  K              V +      D + VA+AI 
Sbjct: 104 LRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIH 163

Query: 138 PWTKLVWVESP----TNPRQQICDIRKIAEMAHA--HGALLLVDNSIMSPV-LSRPLELG 190
             TK++ ++      T P   I  I+++           ++ VDN     +    P  +G
Sbjct: 164 SNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPCHVG 223

Query: 191 ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT- 249
           AD++  S  K   G      G +  K +   +   +   + G G         L+ +   
Sbjct: 224 ADLMAGSLIKNPGGGIVKTGGYIVGKEQ-YVEACAYRLTSPGIGAEAGASLYSLQEMYQG 282

Query: 250 ---MALRVEKQQ 258
                    +  
Sbjct: 283 FFLAPHVAGQAL 294

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} Length = 430

 Score =  211 bits (539), Expect = 3e-66
 Identities = 86/288 (29%), Positives = 136/288 (47%), Gaps = 34/288 (11%)

Query: 1   MSVEEEPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSA---------TENGPYDYT 50
                  G +T  ++        +GAL TP+Y  A F+  ++            G + Y+
Sbjct: 19  YFQGHMRGFTTRALHVPKAKRDVHGALRTPVYDNAAFEFENSDEIAQVSLGRALG-HVYS 77

Query: 51  RSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRL 109
           RS NPT + LE  L  L  A   L   SGMAA++ A+  L   G+ +V  D L+G T  L
Sbjct: 78  RSSNPTVEDLEQRLKNLTGALGVLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSL 137

Query: 110 LSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHG 169
             +  P  G+ V+ V+  D   V  A    TKL+++E+ +NP+ Q+ D+  ++++ HA G
Sbjct: 138 FQKTLPSFGIEVRFVDVMDSLAVEHACDETTKLLFLETISNPQLQVADLEALSKVVHAKG 197

Query: 170 ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG------------ 217
             L+VD ++  P L     LG DI + S+TKFI+G    + GVL   G            
Sbjct: 198 IPLVVDTTMTPPYLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAP 257

Query: 218 --ERLAKELY-------FLQNAEGSGLAPFDCWICLRGVKTMALRVEK 256
              +     +         QN  G  L+P + ++   G++TMALR+E+
Sbjct: 258 YYAKAGPMAFLYKARKEVFQN-LGPSLSPHNAYLQSLGLETMALRIER 304

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* Length = 427

 Score =  203 bits (517), Expect = 3e-63
 Identities = 47/253 (18%), Positives = 90/253 (35%), Gaps = 27/253 (10%)

Query: 31  YQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL-AAVTHL 89
           +Q     +   T +  Y Y   G  + DA+ + +   + A     F +G  AL AA+   
Sbjct: 52  FQEERISEAHFTNSSGYGYGDIGRDSLDAVYARVFNTESALVRPHFVNGTHALGAALFGN 111

Query: 90  LGTGEEIVAG--------DDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAI 136
           L  G  +++          D+ G T+        + G+  K+V+       +L+E+   +
Sbjct: 112 LRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVL 171

Query: 137 GPWTKLVWVESPTN------PRQQICDIRKIAEMAHA--HGALLLVDNSIMSPV-LSRPL 187
                +  V    +          I DI+ I +         +  VDN     +    P 
Sbjct: 172 KEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPT 231

Query: 188 ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV 247
           ++GAD++  S  K I G      G LA   +   ++  +     G G      +  +R +
Sbjct: 232 DVGADLIAGSLIKNIGGGIAPTGGYLAGTKD-CIEKTSYRLTVPGIGGECGSTFGVVRSM 290

Query: 248 KT---MALRVEKQ 257
                +A  +  +
Sbjct: 291 YQGLFLAPHISME 303

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} Length = 412

 Score =  201 bits (514), Expect = 9e-63
 Identities = 87/274 (31%), Positives = 130/274 (47%), Gaps = 41/274 (14%)

Query: 21  DPYGALSTPLYQTA--TFKQPS------ATENGPYDYTRSGNPTRDALESLLAKLDKADR 72
           DP+GA+  P+Y  A   FK         AT  G Y Y R  +PT  ALE  L  L+ A  
Sbjct: 15  DPHGAVGLPIYAVAAYGFKTLEEGQERFATGEG-YVYARQKDPTAKALEERLKALEGALE 73

Query: 73  ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDE 131
           A+   SG AA   A+  LL  G+E+VA   L+G T  L  +V    GV V+ V+  + + 
Sbjct: 74  AVVLASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDP-EPEA 132

Query: 132 VASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSI-MSPVLSRPLELG 190
           V  A+   T+ V+VE+  NP   + D+  +A +A   G  L+VDN+   +  L RPL  G
Sbjct: 133 VREALSAKTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALCRPLAWG 192

Query: 191 ADIVMHSATKFIAGHSDVMAGVL---------------------AVKGERLAKELY---- 225
           A +V+ S TK+ +GH  V+ G +                      +  E L    +    
Sbjct: 193 AHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERV 252

Query: 226 ---FLQNAEGSGLAPFDCWICLRGVKTMALRVEK 256
               L    G  L+PF+ ++  +G++T+ALRV +
Sbjct: 253 RTLGLSLC-GMALSPFNAYLLFQGLETVALRVAR 285

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 Length = 421

 Score =  190 bits (485), Expect = 3e-58
 Identities = 87/281 (30%), Positives = 125/281 (44%), Gaps = 47/281 (16%)

Query: 21  DPY-GALSTPLYQTATFKQPSA---------TENGPYDYTRSGNPTRDALESLLAKLDKA 70
           +P   +   P+Y T ++   S           E G   Y+R  NPT D LE  LA L+  
Sbjct: 15  EPTTLSRQVPIYPTTSYVFKSPEHAANLFALKEFG-NIYSRIMNPTVDVLEKRLAALEGG 73

Query: 71  DRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDL 129
             AL   SG AA   A+T L   G+ IV+  +LYGGT         + G+ V+  +  + 
Sbjct: 74  KAALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREER 133

Query: 130 -DEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSI-MSPVLSRPL 187
            +E  +     T+  WVES  NP   I D+  +A+ A   G  L+VDN+  M   L RPL
Sbjct: 134 PEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPL 193

Query: 188 ELGADIVMHSATKFIAGHSDVMAGVL-------------------------AVKGERLAK 222
             GA +V HS TK++ GH  V+AG +                             E    
Sbjct: 194 AWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFG- 252

Query: 223 ELYFLQNA-------EGSGLAPFDCWICLRGVKTMALRVEK 256
           EL F+  A       +G  L PF+ W+ L G++T++LR E+
Sbjct: 253 ELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAER 293

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* Length = 409

 Score =  185 bits (472), Expect = 1e-56
 Identities = 44/238 (18%), Positives = 79/238 (33%), Gaps = 26/238 (10%)

Query: 46  PYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL-AAVTHLLGTGEEIVA-GDDLY 103
            Y Y   G  T + + + + K + A       SG  A+   +  +L   +E++      Y
Sbjct: 53  GYGYDDEGRDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGILRPDDELLYITGQPY 112

Query: 104 GGTDRL------LSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESP---- 148
              + +               +    V        D   +A  + P TK++ ++      
Sbjct: 113 DTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMTPKTKMIGIQRSRGYA 172

Query: 149 TNPRQQICDIRKIAEMAHAHG--ALLLVDNSIMSPV-LSRPLELGADIVMHSATKFIAGH 205
             P   I  I+++           ++ VDN     V    P E+GADI+  S  K   G 
Sbjct: 173 DRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPPEVGADIIAGSLIKNPGGG 232

Query: 206 SDVMAGVLAVKGERLAKELYFLQNAEG----SGLAPFDCWICLRGVKTMALRVEKQQV 259
                G +A K   L     +     G    +G + +      +G   +A  V  Q +
Sbjct: 233 LAKTGGYIAGKEA-LVDLCGYRLTTPGIGREAGASLYSLLEMYQGF-FLAPHVTAQAI 288

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* Length = 374

 Score =  163 bits (413), Expect = 2e-48
 Identities = 47/220 (21%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 48  DYTRSGNPTR--DALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGG 105
            Y  S       +         D+ D+ + F    +A+ A    L   + I    +L G 
Sbjct: 52  TYIGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALKPKKVIHYLPELPGH 111

Query: 106 TDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTN-PRQQICDIRKIAEM 164
                S       V  K   +  + E+ + I   T ++   S  +    ++ + +K+   
Sbjct: 112 PSIERS----CKIVNAKYFESDKVGEILNKIDKDTLVIITGSTMDLKVIELENFKKVINT 167

Query: 165 AHAHGALLLVDNSIMSPVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER 219
           A    A++ VD++  + V         L+LGAD+V+ S  K + G      G+LA K E 
Sbjct: 168 AKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGP---RGGLLAGKKE- 223

Query: 220 LAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL-RVEKQQ 258
           L  ++Y      G    P       R +K   L R+ K  
Sbjct: 224 LVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAF 263

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371

 Score = 54.0 bits (130), Expect = 1e-08
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 12/101 (11%)

Query: 128 DLDEVASAIGPWTK-----LVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV 182
             +  A  I    K     L  +  P      + D++KIA++   +   LLV+ +     
Sbjct: 131 TPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGR 190

Query: 183 LSRPL---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERL 220
           +  P+   E+GAD ++ S  K +A  +    GV+ +K E  
Sbjct: 191 M--PVSLKEIGADFIVGSGHKSMA--ASGPIGVMGMKEEWA 227

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} Length = 406

 Score = 51.8 bits (125), Expect = 6e-08
 Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 14/116 (12%)

Query: 116 KTGVVVK--RVNT----CDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHG 169
           + G  VK   V+         +  S I   T+LV V S +     + D+R + ++ H  G
Sbjct: 136 RYGAKVKWAEVDIETGELPTWQWESLISKSTRLVAVNSASGTLGGVTDLRAMTKLVHDVG 195

Query: 170 ALLLVDNSIMSPVLSRPL---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK 222
           AL++VD+S  +P   R L   E  AD+V  +A  +       +  ++      +  
Sbjct: 196 ALVVVDHSAAAP--YRLLDIRETDADVVTVNAHAWGGPP---IGAMVFRDPSVMNS 246

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} Length = 357

 Score = 49.6 bits (119), Expect = 3e-07
 Identities = 26/133 (19%), Positives = 41/133 (30%), Gaps = 16/133 (12%)

Query: 55  PTRDALESLLAKLDKADRALCFTSG-MAALAAV-THLLGTGEEIVAGDDLY------GGT 106
              +  E   A +   D A+ F SG MA   A+      T    VA   L          
Sbjct: 47  AIIEPFEQKFADVLGMDDAVFFPSGTMAQQVALRIWSDETDNRTVAYHPLCHLEIHEQDG 106

Query: 107 DRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQIC----DIRKIA 162
            + L  +      V        LDE+ +   P    + +E P      +     ++  I+
Sbjct: 107 LKELHPIETIL--VGAADRLMTLDEIKAL--PDIACLLLELPQREIGGVAPAFSELETIS 162

Query: 163 EMAHAHGALLLVD 175
                 G  L +D
Sbjct: 163 RYCRERGIRLHLD 175

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} Length = 359

 Score = 48.5 bits (116), Expect = 7e-07
 Identities = 29/133 (21%), Positives = 47/133 (35%), Gaps = 15/133 (11%)

Query: 55  PTRDALESLLAKLDKADRALCFTSG-MAALAAV-THLLGTGEEIVAGDDLY------GGT 106
              +  E+ +AK+     A+ F SG MA   A+           VA   L          
Sbjct: 48  AVIEDFETKIAKILGKQSAVFFPSGTMAQQIALRIWADRKENRRVAYHPLSHLEIHEQDG 107

Query: 107 DRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQIC----DIRKIA 162
            + L ++TP    +        +D++ S   P    V +E P            ++ KI+
Sbjct: 108 LKELQQITPLL--LGTANQLLTIDDIKSLREP-VSSVLIELPQREIGGQLPAFEELEKIS 164

Query: 163 EMAHAHGALLLVD 175
           E  H  G  L +D
Sbjct: 165 EYCHEQGISLHLD 177

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* Length = 347

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 18/137 (13%)

Query: 55  PTRDALESLLAKLDKADRALCFTSG-MAALAAVTHLLGTGEEIVAGDD----LY-GGTDR 108
           PT + LE L A+    + AL   SG M    ++      G+E++   D     Y  G   
Sbjct: 38  PTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVGAMA 97

Query: 109 LLSRVTPKTGVVVKRVNTCDLDEVASAIG------PWTKLVWVESPTNPRQQIC----DI 158
           +LS V P    V  +    D D+V  AI       P T L+ +E+  N          +I
Sbjct: 98  VLSGVMPHP--VPGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENI 155

Query: 159 RKIAEMAHAHGALLLVD 175
           ++I  +A  HG  + +D
Sbjct: 156 KEICTIAKEHGINVHID 172

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* Length = 406

 Score = 47.1 bits (113), Expect = 3e-06
 Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 116 KTGVVVKRVN-----TCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA 170
           + G  ++ +      T  L+ + +     T+L+ +   +N       + ++  +AH HGA
Sbjct: 136 RVGAELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGA 195

Query: 171 LLLVD 175
            +LVD
Sbjct: 196 KVLVD 200

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 Length = 420

 Score = 46.7 bits (112), Expect = 3e-06
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 5/65 (7%)

Query: 116 KTGVVVKRVN-----TCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA 170
           KTG V+K V      + DL+   + +   TKLV V   +N    +    +IA++AH  GA
Sbjct: 141 KTGAVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGA 200

Query: 171 LLLVD 175
            +LVD
Sbjct: 201 KVLVD 205

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* Length = 456

 Score = 46.3 bits (109), Expect = 4e-06
 Identities = 30/222 (13%), Positives = 61/222 (27%), Gaps = 40/222 (18%)

Query: 48  DYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDD------ 101
           D   +G+     LE  + +L      +    G  A   ++ L     + VAG+       
Sbjct: 68  DEAYAGSENFYHLERTVQELFGFKHIVPTHQGRGAENLLSQLAIKPGQYVAGNMYFTTTR 127

Query: 102 ----LYGGTDR-LLSRVTPKTGVVVKRVNTCDLDEVASAIGP----WTKLVWVESPTNPR 152
                 G     ++       G+ +      DL ++   I          + +    N  
Sbjct: 128 YHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLA 187

Query: 153 Q----QICDIRKIAEMAHAHGALLLVDNSIMS------------------PVLSRPLELG 190
                 + ++R + E+  AHG  +  D +                       +   +   
Sbjct: 188 GGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSY 247

Query: 191 ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG 232
           AD    S  K    +   + G L +  + +      L     
Sbjct: 248 ADGCTMSGKKDCLVN---IGGFLCMNDDEMFSSAKELVVVYE 286

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* Length = 390

 Score = 45.6 bits (109), Expect = 6e-06
 Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 18/121 (14%)

Query: 116 KTGVVVKRV-------NTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH 168
           + G+  +                +A+ +GP T+LV +        Q+  + +I  +   H
Sbjct: 124 RFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMAVCRRH 183

Query: 169 G----ALLLVDNSIMSPVLSRPL---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA 221
                  +LVD +  +  L  PL    L  D    +  K+ AG + V  G L + G+ L 
Sbjct: 184 QGNYPVRVLVDGAQSAGSL--PLDFSRLEVDYYAFTGHKWFAGPAGV--GGLYIHGDCLG 239

Query: 222 K 222
           +
Sbjct: 240 E 240

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} Length = 755

 Score = 45.1 bits (106), Expect = 1e-05
 Identities = 27/207 (13%), Positives = 53/207 (25%), Gaps = 40/207 (19%)

Query: 61  ESLLAKLDKADRALCFTSG--MAALAAVTHLLGTGEEIVA----------GDDLYGGTDR 108
           E   A++  ADR+     G   +    +   +   + +V           G  L G    
Sbjct: 211 EKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPV 270

Query: 109 LLSRVTPKTGVVVKRVNTC-DLDEVASAI----------GPWTKLVWVESPTNPRQQICD 157
            +     + G++          + +   I          G       V + T       +
Sbjct: 271 YMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCT-YDGVCYN 329

Query: 158 IRKIAEMAHAHGALLLVDNS-----IMSPVL---------SRPLELGADIVMHSATKFIA 203
            ++  ++       L  D +       +P+                      HS  K + 
Sbjct: 330 AKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLN 389

Query: 204 GHSDVMAGVLAVKGERLAKELYFLQNA 230
             S   A  + V+  R A        A
Sbjct: 390 ALS--QASYIHVREGRGAINFSRFNQA 414

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} Length = 396

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 22/119 (18%), Positives = 46/119 (38%), Gaps = 34/119 (28%)

Query: 128 DLDEVASAIGPWTKLVWVESPTNPRQQICDI---RKIAEMAHAHGALLLVDN-------- 176
           D   ++  +   TKLV+V SP NP   + D+   +++ ++   +G ++  D         
Sbjct: 157 DWRSISEEVWKRTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFD 216

Query: 177 -----SIMSPVLSRPLELGAD----IVMHSATK----------FIAGHSDVMAGVLAVK 216
                      L    +LG      ++  S +K          F+AG ++++   L  +
Sbjct: 217 GNKPLGC----LQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLLYR 271

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} Length = 399

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 25/142 (17%), Positives = 47/142 (33%), Gaps = 45/142 (31%)

Query: 58  DALESLLAKLDKADRALCFTSG-MAALAAVTHLLGTGEEIVAGDDLYGGTDRL------- 109
             LE  +++    D  + ++S   A       LLG  + I++        D L       
Sbjct: 91  KELEKDISEFLGTDDTILYSSCFDANGGLFETLLGPEDAIIS--------DELNHASIID 142

Query: 110 ---LSRVTPKTGVVVKRVNTCDLDEV------ASAIGPWTKLVWVESPTNPRQQ------ 154
              L +          R     + ++      A   G   KL+  +              
Sbjct: 143 GIRLCKAQ------RYRYKNNAMGDLEAKLKEADEKGARFKLIATDG-------VFSMDG 189

Query: 155 -ICDIRKIAEMAHAHGALLLVD 175
            I D++ I ++A  + AL++VD
Sbjct: 190 IIADLKSICDLADKYNALVMVD 211

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A Length = 409

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 22/136 (16%), Positives = 37/136 (27%), Gaps = 38/136 (27%)

Query: 58  DALESLLAKLDKADRALCFTSG-MAALAAVTHLLGTGEEIVAGDDLYGGTDRL------- 109
             +E  LAK    D  L   SG  A +  +  +      +          D         
Sbjct: 107 PMIEKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYI--------DFFAHMSLWE 158

Query: 110 ---LSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQ-------ICDIR 159
               +             N   L  +    GP   ++ V+S              I  + 
Sbjct: 159 GARYANAQAH---PFMHNNCDHLRMLIQRHGP--GIIVVDS-------IYSTLGTIAPLA 206

Query: 160 KIAEMAHAHGALLLVD 175
           ++  ++   G  LLVD
Sbjct: 207 ELVNISKEFGCALLVD 222

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} Length = 446

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 8/91 (8%)

Query: 138 PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS-----IMSPVLSRPLELGAD 192
              KLV +  P     +  ++ ++ +  H     +L+D +      +       L   AD
Sbjct: 145 DGHKLVVLTYPN-YYGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDSTLNYQAD 203

Query: 193 IVMHSATKFIAGHSDVMAGVLAVKGERLAKE 223
            V+ S  K +   +  M  VL +      +E
Sbjct: 204 YVVQSFHKTLPALT--MGSVLYIHKNAPYRE 232

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} Length = 376

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 26/165 (15%), Positives = 58/165 (35%), Gaps = 24/165 (14%)

Query: 56  TRDALESL--LAKLDKADRALCFT-SGMAAL-AAVTHLLGTGEEIVAGDD-LYGGTDRLL 110
             +  + +   AK  +  +A+  T S   ++ A V +     ++++  D   +G   R  
Sbjct: 54  MLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCFTKKDKVLVIDGGSFG--HRF- 110

Query: 111 SRVTPKTGVVVKRVNT-----CDLDEVASAIGPWTKLVWV---ESPTNPRQQICDIRKIA 162
            ++     +    +          +++          + V   E+ T       D   I 
Sbjct: 111 VQLCEIHEIPYVALKLEHGKKLTKEKLYEYDNQNFTGLLVNVDETSTAVLY---DTMMIG 167

Query: 163 EMAHAHGALLLVDNSIMSPVLSRPL---ELGADIVMHSATKFIAG 204
           E    +    + D   +S  L+ P    E GAD+++  + K +A 
Sbjct: 168 EFCKKNNMFFVCDC--VSAFLADPFNMNECGADVMITGSQKVLAC 210

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* Length = 384

 Score = 43.3 bits (103), Expect = 5e-05
 Identities = 31/139 (22%), Positives = 48/139 (34%), Gaps = 42/139 (30%)

Query: 58  DALESLLAKLDKADRALCFTSG-MAALAAVTHLLGTGEEIVAGDDLYGGTDRL------- 109
            ALE  LA+     RAL F SG  A  A +  ++   + I A        DRL       
Sbjct: 87  QALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAA--------DRLSHASLLE 138

Query: 110 ---LSRVTPKTGVVVKRVNTCDLDEVAS---AIGPWTKLVWVESPTNPRQQ-------IC 156
              LS         ++R    D+  +A    +  P  ++V  E                 
Sbjct: 139 AASLSPSQ------LRRFAHNDVTHLARLLASPCPGQQMVVTEG-------VFSMDGDSA 185

Query: 157 DIRKIAEMAHAHGALLLVD 175
            + +I ++   H   L+VD
Sbjct: 186 PLAEIQQVTQQHNGWLMVD 204

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 Length = 401

 Score = 42.6 bits (101), Expect = 6e-05
 Identities = 25/142 (17%), Positives = 46/142 (32%), Gaps = 45/142 (31%)

Query: 58  DALESLLAKLDKADRALCFTSG-MAALAAVTHLLGTGEEIVAGDDLYGGTDRL------- 109
             LE  LA     + A+ ++S   A       LLG  + I++        D L       
Sbjct: 93  KELEQKLAAFLGMEDAILYSSCFDANGGLFETLLGAEDAIIS--------DALNHASIID 144

Query: 110 ---LSRVTPKTGVVVKRVNTCDLD------EVASAIGPWTKLVWVESPTNPRQQ------ 154
              L +          R    D+       + A   G    L+  +              
Sbjct: 145 GVRLCKAK------RYRYANNDMQELEARLKEAREAGARHVLIATDG-------VFSMDG 191

Query: 155 -ICDIRKIAEMAHAHGALLLVD 175
            I +++ + ++A  + AL++VD
Sbjct: 192 VIANLKGVCDLADKYDALVMVD 213

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} Length = 398

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 21/133 (15%), Positives = 50/133 (37%), Gaps = 29/133 (21%)

Query: 58  DALESLLAKLDKADRALCFTSG-MAALAAVTHLLGTGEEIVAGDDLYGGTDRL------- 109
             LE  L+     + A+ F++G  + L  ++ L+G  + I+         D         
Sbjct: 91  VELEEKLSAYVGKEAAILFSTGFQSNLGPLSCLMGRNDYILL--------DERDHASIID 142

Query: 110 ---LSRVTPKTGVVVKRVNTCDLDE----VASAIGPWTKLVWVESPTNPRQQICDIRKIA 162
              LS         V +    ++++    ++       KL+  +   +    I ++ ++ 
Sbjct: 143 GSRLSFSK------VIKYGHNNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVNLPELT 196

Query: 163 EMAHAHGALLLVD 175
            +A+   A ++VD
Sbjct: 197 SIANEFDAAVMVD 209

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* Length = 438

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 154 QICDIRKIAEMAHAHGALLLVDNSIMS-PVLSRPLELGADIV 194
            + D+   AE AH  GAL +     +S  VL  P   GADI 
Sbjct: 210 ALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPPGAYGADIA 251

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* Length = 364

 Score = 41.7 bits (99), Expect = 1e-04
 Identities = 22/118 (18%), Positives = 42/118 (35%), Gaps = 33/118 (27%)

Query: 112 RVTPKTGVVVKRV------NTCDLDEVASAIGPWTKLVWVESPTNP------RQQICDIR 159
           R   ++G  ++R            D +  A+ P    +++ +P NP      R     ++
Sbjct: 113 RALAQSGCEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNPTGLLPERP---LLQ 169

Query: 160 KIAEMAHAHGALLLVD----------NSIMSPVLSRP-LELGADIVMHSATKF--IAG 204
            IA+   +    L++D             +  +   P +      V+ S TKF  I G
Sbjct: 170 AIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHI-----WVLRSLTKFYAIPG 222

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} Length = 447

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 24/120 (20%)

Query: 77  TSG--MAALAAVTHLLGTGEEIVAGD---DLY-------GGTDRLLSRVTPKTGVVVKRV 124
           T+G     L+ +  LL  G+E++  +   D Y       GG    +    PK        
Sbjct: 124 TTGANEGILSCLMGLLNAGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTR 183

Query: 125 N---TCDLDEVASAIGPWTKLVWVESPTNP------RQQICDIRKIAEMAHAHGALLLVD 175
               T D ++   AI   TK V + +P NP      R+   ++  +  +   H  +++ D
Sbjct: 184 GEEWTIDFEQFEKAITSKTKAVIINTPHNPIGKVFTRE---ELTTLGNICVKHNVVIISD 240

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} Length = 376

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 33/117 (28%)

Query: 128 DLDEVASAIGPWTKLVWVESPTNPRQQICDI---RKIAEMAHAHGALLLVDN-------- 176
            L+E          LV + SP NP  +   +       ++A  H  +L+ D         
Sbjct: 146 SLNE---KELQEVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYEN 202

Query: 177 ----SIMSPVLSRPLELGAD---IVMHSATK----------FIAGHSDVMAGVLAVK 216
               S++           A    +V+HS +K          FIAG S ++    A +
Sbjct: 203 TPPPSLLEA--CMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAGDSRLLEKYKAFR 257

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* Length = 474

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 7/44 (15%)

Query: 157 DIRKIAEMAHAHGALLLVD----NSIMSPVLSRPLELGADIVMH 196
            I +I+ +    G  L  D    N+IM    +RP ++G D V+H
Sbjct: 221 RILEISRLCKEAGVQLYYDGANLNAIMG--WARPGDMGFD-VVH 261

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A* Length = 410

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 34/161 (21%), Positives = 61/161 (37%), Gaps = 29/161 (18%)

Query: 41  ATENGPYDYTR-SGNPT-RDALESLLAKLDK----ADRALCFTSG--MAALAAVTHLLGT 92
           A  +    YTR  G+P    AL  L  K+ +     +  +    G   +   ++  L+  
Sbjct: 49  AFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGLVDP 108

Query: 93  GEEIVAGD---DLY-------GGTDRLLSRVTPKTGVVVKRVN--TCDLDEVASAIGPWT 140
           G+E++      D Y       G     +   +  T  +    +  T D  E+ S     T
Sbjct: 109 GDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSKT 168

Query: 141 KLVWVESPTNP------RQQICDIRKIAEMAHAHGALLLVD 175
           K + + +P NP      RQ   +++ IA++   H  L + D
Sbjct: 169 KAIILNTPHNPLGKVYTRQ---ELQVIADLCVKHDTLCISD 206

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} Length = 386

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 18/109 (16%), Positives = 40/109 (36%), Gaps = 16/109 (14%)

Query: 78  SGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----CDLDE 131
           SG   + A++ + +  G +++       G       V    G     +          ++
Sbjct: 79  SGTGIMEASIRNGVSKGGKVLVTIIGAFGK--RYKEVVESNGRKAVVLEYEPGKAVKPED 136

Query: 132 VASAI--GPWTKLVWV---ESPTNPRQQICDIRKIAEMAHAHGALLLVD 175
           +  A+   P  + V +   E+ T        + ++A++A  H  L+ VD
Sbjct: 137 LDDALRKNPDVEAVTITYNETSTGVLN---PLPELAKVAKEHDKLVFVD 182

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* Length = 427

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 29/136 (21%), Positives = 49/136 (36%), Gaps = 37/136 (27%)

Query: 59  ALESLLAKLDKADRALCFTSG-MAALAAVTHLLGTGEEIVAGDDLYGGTDRL-------- 109
            +E  L        A+ F++G MA L  ++ L G GE ++         D          
Sbjct: 113 EVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEYVIL--------DADSHASIYDG 164

Query: 110 --LSRVTPKTGVVVKRVNTCDLDEVASAIGPW-TKLVWVESPTNPRQQ-------ICDIR 159
                      V  +  +  DLD+    +     KLV +E               I  ++
Sbjct: 165 CQQGNAEI---VRFRHNSVEDLDKRLGRLPKEPAKLVVLEG-------VYSMLGDIAPLK 214

Query: 160 KIAEMAHAHGALLLVD 175
           ++  +A  HGA++LVD
Sbjct: 215 EMVAVAKKHGAMVLVD 230

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* Length = 392

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 16/109 (14%)

Query: 78  SGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----CDLDE 131
             +  L AA   L+   + ++       G          +    +  +        D   
Sbjct: 67  EPVLGLEAAAASLISPDDVVLNLASGVYGK--GFGYWAKRYSPHLLEIEVPYNEAIDPQA 124

Query: 132 VASAI--GPWTKLVWV---ESPTNPRQQICDIRKIAEMAHAHGALLLVD 175
           VA  +   P   +V V   ++P+        I  I  +  AHGA L+VD
Sbjct: 125 VADMLKAHPEITVVSVCHHDTPSGTIN---PIDAIGALVSAHGAYLIVD 170

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* Length = 375

 Score = 39.8 bits (94), Expect = 5e-04
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 16/71 (22%)

Query: 118 GVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNP------RQQICDIRKIAEM 164
           G  V             DL+++   I P TK++ + +  NP      R     + ++ E+
Sbjct: 126 GAEVDLWQIEEENGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRT---YLEELVEI 182

Query: 165 AHAHGALLLVD 175
           A   GA +L D
Sbjct: 183 ASEVGAYILSD 193

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* Length = 429

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 22/118 (18%)

Query: 77  TSG--MAALAAVTHLLGTGEEIVAGD---DLY-------GGTDRLLSRVTPKTGVVVKRV 124
           T G   A  A +   +  G+E++  +   D Y       GG  R +     KTG  +   
Sbjct: 107 TVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSA 166

Query: 125 N-TCDLDEVASAIGPWTKLVWVESPTNP------RQQICDIRKIAEMAHAHGALLLVD 175
           +   D +E+ +     TK++ + +P NP      R    ++  +A +      L + D
Sbjct: 167 DWVLDNNELEALFNEKTKMIIINTPHNPLGKVMDRA---ELEVVANLCKKWNVLCVSD 221

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* Length = 396

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 22/118 (18%), Positives = 50/118 (42%), Gaps = 16/118 (13%)

Query: 69  KADRALCFT-SGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT 126
           +    +C + S  A + A +++LL  G+ ++   +           ++ + G  V+ +  
Sbjct: 67  ENRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAE--RAVEMSERYGADVRTIEG 124

Query: 127 -----CDLDEVASAI-GPWTKLVWV---ESPTNPRQQICDIRKIAEMAHAHGALLLVD 175
                  L+ +A AI     K +++   +S +   Q    +  + ++ H H  LL+VD
Sbjct: 125 PPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQ---PLEGVGQICHQHDCLLIVD 179

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* Length = 730

 Score = 40.1 bits (93), Expect = 6e-04
 Identities = 32/205 (15%), Positives = 62/205 (30%), Gaps = 41/205 (20%)

Query: 61  ESLLAKLDKADRALCFTSG--MAALAAVTHLLGTGEEIV-----------AGDDLYGGTD 107
           E   A++  AD+      G   A     + L+  G+ ++           +   + GG  
Sbjct: 179 EKHAARVYNADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRP 238

Query: 108 RLLS-RVTPKT---GVVVKRVNTCDLDEVASAIGPWT-------KLVWVESPTNPRQQIC 156
             L     P     G+     +   + E+A+ + P         +L  ++  T     I 
Sbjct: 239 VYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGT-YDGTIY 297

Query: 157 DIRKIAEMAHAHGALLLVD--------------NSIMSPVLSRPLELGADIVMHSATKFI 202
           +  ++ +        +  D              NS    +     E    IV+ S  K  
Sbjct: 298 NAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQ 357

Query: 203 AGHSDVMAGVLAVKGERLAKELYFL 227
           AG S      +  K   +  +L + 
Sbjct: 358 AGFS--QTSQIHKKDSHIKGQLRYC 380

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 6e-04
 Identities = 33/239 (13%), Positives = 69/239 (28%), Gaps = 66/239 (27%)

Query: 42  TENGPYDYTRSGNPTRDALESLLAK----LDKADRALCFTSGMAALAAVTHLLGTGEEIV 97
            E G + Y       +D L           D  D        + +   + H++ + + + 
Sbjct: 9   FETGEHQYQ-----YKDILSVFEDAFVDNFDCKD-VQDMPKSILSKEEIDHIIMSKDAVS 62

Query: 98  AGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD 157
                  GT RL   +  K   +V++     ++EV      +           P      
Sbjct: 63  -------GTLRLFWTLLSKQEEMVQKF----VEEVLRINYKFLMSPIKTEQRQPS----M 107

Query: 158 IRKIAEMAHAHGALLLVDNSIMSPV-LSRP----------LEL--GADIVMHSATKFIAG 204
           + ++          L  DN + +   +SR           LEL    ++++        G
Sbjct: 108 MTRMYIEQRDR---LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID-------G 157

Query: 205 HSDVMAG----VLAVKGERLAKELYFLQNAEGSGLAPFDC-WICLRGVKTMALRVEKQQ 258
               + G     +A+             + +      F   W+ L+   +    +E  Q
Sbjct: 158 ----VLGSGKTWVALDV---------CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} Length = 416

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 20/108 (18%), Positives = 42/108 (38%), Gaps = 15/108 (13%)

Query: 78  SGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----CDLDE 131
           +  A + A +  ++   ++++     YG    LL+ +  + G  V  +        D ++
Sbjct: 70  TSRAGIEAVLASVIEPEDDVLIPI--YGRFGYLLTEIAERYGANVHMLECEWGTVFDPED 127

Query: 132 VASAI-GPWTKLVWV---ESPTNPRQQICDIRKIAEMAHAHGALLLVD 175
           +   I     K+V +   E+ T        ++ I E      AL +VD
Sbjct: 128 IIREIKKVKPKIVAMVHGETSTGRIH---PLKAIGEACRTEDALFIVD 172

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* Length = 384

 Score = 39.1 bits (92), Expect = 8e-04
 Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 14/107 (13%)

Query: 78  SGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----CDLDEV 132
            G +A+ +VT LL   ++I+   +   G      ++  +  V VK +           EV
Sbjct: 62  GGTSAMESVTSLLKPNDKILVVSNGVFGD--RWEQIFKRYPVNVKVLRPSPGDYVKPGEV 119

Query: 133 ASAI-GPWTKLVWV---ESPTNPRQQICDIRKIAEMAHAHGALLLVD 175
              +     KLV +   E+ T  R+    ++ +      +  L++VD
Sbjct: 120 EEEVRKSEYKLVALTHVETSTGVRE---PVKDVINKIRKYVELIVVD 163

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	265
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	100.0
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	100.0
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	100.0
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	100.0
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	100.0
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	100.0
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	100.0
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	100.0
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	100.0
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	100.0
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	100.0
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	100.0
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	100.0
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	99.98
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	99.97
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	99.97
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	99.96
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	99.95
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	99.95
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	99.95
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	99.95
3nra_A	407	Aspartate aminotransferase; structural genomics, j	99.95
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	99.95
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	99.95
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	99.94
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	99.94
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	99.94
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	99.94
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	99.94
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	99.94
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	99.94
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	99.94
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	99.94
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	99.93
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	99.93
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	99.93
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	99.93
3ele_A	398	Amino transferase; RER070207001803, structural gen	99.93
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	99.93
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	99.93
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	99.93
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	99.93
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	99.93
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	99.93
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	99.93
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	99.93
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	99.92
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	99.92
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	99.92
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	99.92
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	99.92
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	99.92
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	99.92
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	99.92
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	99.92
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	99.92
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	99.92
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	99.92
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	99.92
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	99.92
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	99.92
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	99.92
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	99.92
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	99.92
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	99.92
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	99.92
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	99.92
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	99.92
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	99.92
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	99.91
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	99.91
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	99.91
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	99.91
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	99.91
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	99.91
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	99.91
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	99.91
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	99.91
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	99.91
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.91
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	99.91
1vp4_A	425	Aminotransferase, putative; structural genomics, j	99.91
3rq1_A	418	Aminotransferase class I and II; structural genomi	99.91
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	99.91
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	99.91
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	99.9
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	99.9
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	99.9
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.9
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	99.9
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.9
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	99.9
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	99.9
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	99.9
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	99.9
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	99.9
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	99.9
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	99.9
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	99.9
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	99.9
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	99.9
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	99.9
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.9
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	99.89
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	99.89
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	99.89
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	99.89
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	99.89
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	99.89
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.89
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	99.89
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	99.89
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	99.89
1iug_A	352	Putative aspartate aminotransferase; wild type, py	99.89
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.89
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	99.89
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	99.89
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	99.89
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	99.88
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	99.88
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	99.88
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	99.88
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	99.88
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	99.88
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	99.88
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	99.88
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	99.88
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	99.88
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	99.88
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	99.8
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	99.88
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	99.88
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	99.88
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	99.88
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	99.88
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	99.87
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	99.87
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	99.87
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	99.87
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	99.87
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	99.87
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.87
2fnu_A	375	Aminotransferase; protein-product complex, structu	99.87
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	99.87
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	99.87
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	99.87
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	99.87
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	99.86
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	99.86
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	99.86
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	99.86
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	99.86
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	99.85
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.85
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	99.85
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.85
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	99.85
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	99.85
1svv_A	359	Threonine aldolase; structural genomics, structura	99.84
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	99.84
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	99.84
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	99.84
1z7d_A	433	Ornithine aminotransferase; structural genomics co	99.84
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.83
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	99.83
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	99.83
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	99.83
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	99.83
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	99.83
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	99.83
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	99.82
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	99.82
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.82
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	99.82
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	99.81
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	99.81
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	99.81
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	99.81
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	99.8
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	99.8
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	99.8
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	99.8
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	99.8
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	99.8
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.8
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	99.79
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	99.79
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.79
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	99.79
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	99.79
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	99.79
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.78
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	99.78
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.78
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	99.78
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	99.78
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	99.78
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	99.78
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	99.77
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	99.77
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	99.77
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	99.77
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.77
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	99.77
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	99.76
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	99.76
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	99.75
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	99.75
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	99.75
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	99.75
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.74
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.74
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	99.74
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	99.74
3hmu_A	472	Aminotransferase, class III; structural genomics,	99.74
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	99.74
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	99.73
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	99.72
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	99.72
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	99.71
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	99.71
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	99.54
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	99.69
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	99.68
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	99.67
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	99.58
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	99.57
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	99.55
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	99.55
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.52
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	99.45
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	99.41
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	99.37
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	99.19
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	99.1
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.04
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	88.75
2al1_A	436	Enolase 1, 2-phospho-D-; beta barrel, lyase; HET:	81.68
3qtp_A	441	Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Ent	80.03

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=100.00  E-value=1.7e-35  Score=264.95  Aligned_cols=255  Identities=85%  Similarity=1.281  Sum_probs=214.2

Q ss_pred             CCcceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHHHH
Q 024619            7 PGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAV   86 (265)
Q Consensus         7 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~~~   86 (265)
                      +..++.+++++...+..+..++|+.++.++........+.+.|++.|++.++++++++++++|.++++++++|++|+.++
T Consensus        85 ~~~~~~~i~l~~g~~~~~~~~~~i~~a~~~~~~~~~~~~~~~Y~~~g~~~~~~l~~~la~~~g~~~~i~~~sGt~al~~~  164 (464)
T 1ibj_A           85 ASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLAKLDKADRAFCFTSGMAALSAV  164 (464)
T ss_dssp             CCHHHHHTCCCCSSCTTCCSSCCCCCCSBCCCSSSSCCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHH
T ss_pred             CCcCCeEEECCCCCCCCCCCCccHHhhhhhhhhcccccCCccccCCCCHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHH
Confidence            45567789998324788999999999987654433445678899779999999999999999999899999999998755


Q ss_pred             HHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHH
Q 024619           87 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAH  166 (265)
Q Consensus        87 ~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~  166 (265)
                      ..++++||+|++++|.|+++...+...++..|++++.++..|++++++++.+++++|++++|+||||.+.|+++|+++|+
T Consensus       165 l~~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~i~~~tk~v~l~~p~NptG~v~~l~~i~~la~  244 (464)
T 1ibj_A          165 THLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAH  244 (464)
T ss_dssp             HTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTTSHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHH
T ss_pred             HHHhCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHhccCceEEEEeCCCCCCCEeecHHHHHHHHH
Confidence            56889999999999999999866656678889999999999999999999999999999999999999999999999999


Q ss_pred             HcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhc
Q 024619          167 AHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRG  246 (265)
Q Consensus       167 ~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (265)
                      ++|+++|+||+|+.+....+...+.|+++.|+||+++++.|+++|+++++++.+.+.+.......+..+++..++.+.+.
T Consensus       245 ~~gi~livDea~~~g~~~~~~~~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~~~g~~~~~~~~~a~~~a  324 (464)
T 1ibj_A          245 AQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRG  324 (464)
T ss_dssp             TTTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHH
T ss_pred             HcCCEEEEECCCcccccCChhhcCCEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHHHHHhcCCCCCHHHHHHHHhc
Confidence            99999999999998766556667899999999999988889999999998756656566665556677788888888888


Q ss_pred             cCchHhhHHHHhhch
Q 024619          247 VKTMALRVEKQQVCF  261 (265)
Q Consensus       247 l~~~~~~~~~~~~~~  261 (265)
                      ++.+..++++...++
T Consensus       325 l~~~~~r~~~~~~~~  339 (464)
T 1ibj_A          325 IKTMALRIEKQQENA  339 (464)
T ss_dssp             HTTHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHH
Confidence            887666665554443

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=100.00  E-value=7.2e-36  Score=263.92  Aligned_cols=260  Identities=30%  Similarity=0.475  Sum_probs=222.8

Q ss_pred             CCCCCcceeEeeccCCCCCCCCCCCCeeeccccccCCC--------CCCCCCccCCCCChhHHHHHHHHHhHhCCCceEE
Q 024619            4 EEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSA--------TENGPYDYTRSGNPTRDALESLLAKLDKADRALC   75 (265)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--------~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~   75 (265)
                      |...+.++.+++-+...+..|...+|++++.++..+..        .....+.|++.++|.++++++++++++|.+++++
T Consensus        22 ~~~~~~~t~~~~~~~~~~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~l~~~la~~~g~~~~~~  101 (414)
T 3ndn_A           22 PDGVSQATVGVRGGMLRSGFEETAEAMYLTSGYVYGSAAVAEKSFAGELDHYVYSRYGNPTVSVFEERLRLIEGAPAAFA  101 (414)
T ss_dssp             CTTCCHHHHHHHTTCCCCTTCBSSCCBCCCSBBCCSSHHHHHHHHTTSSCCCCBTTTCCHHHHHHHHHHHHHHTCSEEEE
T ss_pred             cCCCCccceeeecCCCCCCCCCcCCCcccCCceecCChHHHHHHHhCCcCCcCcCCCCChHHHHHHHHHHHHHCCCcEEE
Confidence            44556677888887556778999999999999876553        2345688999999999999999999999999999


Q ss_pred             ecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccc
Q 024619           76 FTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQ  154 (265)
Q Consensus        76 ~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~  154 (265)
                      +++|++|+. ++..++++||+|++++|.|+++...+...++..|+++++++.+|++++++++.+++++|++++|+||+|.
T Consensus       102 ~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~ai~~~t~~v~le~p~NptG~  181 (414)
T 3ndn_A          102 TASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGDDLSQWERALSVPTQAVFFETPSNPMQS  181 (414)
T ss_dssp             ESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHTSSCCSEEEEESSCTTTCC
T ss_pred             ECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCCCCeEEEEECCCCCCCc
Confidence            999999986 6778899999999999999998866655556689999999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCC
Q 024619          155 ICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG  234 (265)
Q Consensus       155 ~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~  234 (265)
                      +.|+++|.++|+++|+++|+|++|+.+....+...+.|+++.|++|++++++.+++|+++.+++.+...+.......+..
T Consensus       182 ~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~g~~  261 (414)
T 3ndn_A          182 LVDIAAVTELAHAAGAKVVLDNVFATPLLQQGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPA  261 (414)
T ss_dssp             CCCHHHHHHHHHHTTCEEEEECTTTHHHHCCCGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHHHCCC
T ss_pred             cccHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999998776667788899999999999965444889999998876654555555666777


Q ss_pred             CChhHHHHHHhccCchHhhHHHHhhchhc
Q 024619          235 LAPFDCWICLRGVKTMALRVEKQQVCFFD  263 (265)
Q Consensus       235 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  263 (265)
                      +++..++..++.++.+..+++++.+|+..
T Consensus       262 ~~~~~a~~~~~~l~~l~~r~~~~~~~a~~  290 (414)
T 3ndn_A          262 MSAFNAWVLLKGLETLAIRVQHSNASAQR  290 (414)
T ss_dssp             CCHHHHHHHHHHGGGHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999988888887777654

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=100.00  E-value=2.2e-35  Score=259.76  Aligned_cols=258  Identities=43%  Similarity=0.680  Sum_probs=224.5

Q ss_pred             CCcceeEeeccCCCC-CCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHHH
Q 024619            7 PGVSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAA   85 (265)
Q Consensus         7 ~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~~   85 (265)
                      .+.++..++-+...+ ..|...+|++++.++..........+.|++.++|..+++++.++++.|.++.+++++|++|+.+
T Consensus        18 ~~~~t~~~~~~~~~~~~~~~~~~pi~~~s~~~~~~~~~~~~~~y~r~~~p~~~~l~~~la~l~g~~~~~~~~sG~~Ai~~   97 (400)
T 3nmy_A           18 LSLATLAIHGGQSPDPSTGAVMPPIYATSTYAQSSPGEHQGFEYSRTHNPTRFAYERCVAALEGGTRAFAFASGMAATST   97 (400)
T ss_dssp             CCHHHHHHHTTCCCCTTTCBSSCCBCCCSBBBCSBTTBSSSCCBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHH
T ss_pred             CCcchheeeCCCCCCCCCCCcCCCccccceeeccCccccCCcccccCCCHHHHHHHHHHHHHhCCCCEEEecCHHHHHHH
Confidence            355677888775444 4899999999999988766555678899999999999999999999999999999999999977


Q ss_pred             HHHhcCCCCEEEEcCCCCCChHHHHHhh-cCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHH
Q 024619           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRV-TPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEM  164 (265)
Q Consensus        86 ~~~~~~~g~~viv~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~  164 (265)
                      ++.++++||+|+++++.|++....+... ++..|++++.++..|++++++++.+++++|++++|+||+|.+.|+++|.++
T Consensus        98 ~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~e~~~np~G~~~~l~~i~~l  177 (400)
T 3nmy_A           98 VMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDLTDPAAFKAAIRADTKMVWIETPTNPMLKLVDIAAIAVI  177 (400)
T ss_dssp             HHTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEECTTSHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred             HHHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEECCCCHHHHHHHhccCCCEEEEECCCCCCCeeecHHHHHHH
Confidence            7888999999999999999777665554 566799999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceee-EEEeechhHHHHHHHHHHhccCCCChhHHHHH
Q 024619          165 AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAG-VLAVKGERLAKELYFLQNAEGSGLAPFDCWIC  243 (265)
Q Consensus       165 a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (265)
                      |+++|+++|+|++|+.+....+...+.|+++.|++|+++|++..++| +++..++.+.+.+.......+..+++..++.+
T Consensus       178 a~~~g~~livDe~~~~~~~~~~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~  257 (400)
T 3nmy_A          178 ARKHGLLTVVDNTFASPMLQRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFLA  257 (400)
T ss_dssp             HHHTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHCCBCCHHHHHHH
T ss_pred             HHHcCCEEEEECCCcccccCChhhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            99999999999999977776777889999999999999877666678 67777777777777777788888999999999


Q ss_pred             HhccCchHhhHHHHhhchhcc
Q 024619          244 LRGVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       244 ~~~l~~~~~~~~~~~~~~~~l  264 (265)
                      ++.++.+..+++++.+|+..+
T Consensus       258 l~~l~~l~~r~~~~~~~a~~l  278 (400)
T 3nmy_A          258 LRGLKTLPLRMRAHCENALAL  278 (400)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHhHhHHHHHHHHHHHHHHHH
Confidence            999999988888888877653

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=100.00  E-value=3.7e-34  Score=251.45  Aligned_cols=256  Identities=43%  Similarity=0.697  Sum_probs=220.2

Q ss_pred             CcceeEeeccCCCC-CCCCCCCCeeeccccccCCCCCC-CCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-
Q 024619            8 GVSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSATEN-GPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-   84 (265)
Q Consensus         8 ~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~-~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-   84 (265)
                      ++++..++-+...+ ..|...+|++++.++..+..... ..+.|++.+++..+++++.+++++|.++++++++|++|+. 
T Consensus        17 ~~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~y~r~~~~~~~~l~~~la~~~g~~~~~~~~sGt~A~~~   96 (392)
T 3qhx_A           17 GLATRAIHSGYRPDPATGAVNAPIYASSTFAQDGVGGLRGGYEYARTGNPTRTALEAALAAVEDAAFGRAFSSGMAAADC   96 (392)
T ss_dssp             CHHHHHHHSSCCCCTTTCBSSCCBCCCSBBCCSSTTCCBTTBCBTTTCCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHH
T ss_pred             CcchhheeCCCCCCCCCCCccCCcccCcceEecCcccccCCccccCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHH
Confidence            45667777764333 47899999999998776554332 3688999999999999999999999999999999999986 


Q ss_pred             HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHH
Q 024619           85 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEM  164 (265)
Q Consensus        85 ~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~  164 (265)
                      ++..++++||+|+++.+.|+++...+...++..|++++.++.+|++++++++.+++++|++++|+||+|.+.|+++|.++
T Consensus        97 al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l  176 (392)
T 3qhx_A           97 ALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVALADLDAVRAAIRPTTRLIWVETPTNPLLSIADIAGIAQL  176 (392)
T ss_dssp             HHHHHCCTTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred             HHHHHhCCCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEeCCCCHHHHHHhhCCCCeEEEEECCCCCCcEEecHHHHHHH
Confidence            66778999999999999999887777667788899999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHH
Q 024619          165 AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL  244 (265)
Q Consensus       165 a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (265)
                      |+++|+++|+|++|+.+....+...+.|+++.|++|++++++++++|+++.++..+.+.+.......+...++..++.++
T Consensus       177 a~~~g~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~  256 (392)
T 3qhx_A          177 GADSSAKVLVDNTFASPALQQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTM  256 (392)
T ss_dssp             HHHHTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_pred             HHHcCCEEEEECCCcccccCChHHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            99999999999999988777777889999999999999766558899999987667676777777778888999999999


Q ss_pred             hccCchHhhHHHHhhchhc
Q 024619          245 RGVKTMALRVEKQQVCFFD  263 (265)
Q Consensus       245 ~~l~~~~~~~~~~~~~~~~  263 (265)
                      +.++.+..++++..+++..
T Consensus       257 ~~l~~l~~~~~~~~~~~~~  275 (392)
T 3qhx_A          257 RGLKTLVLRMQRHSENAAA  275 (392)
T ss_dssp             HHHTTHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHH
Confidence            9999887777777776654

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=100.00  E-value=6.3e-34  Score=251.43  Aligned_cols=255  Identities=23%  Similarity=0.392  Sum_probs=213.7

Q ss_pred             CcceeEeeccCCCC-CCCCCCCCeeeccccccCCCC--------C-CCCCccCCCCChhHHHHHHHHHhHhCCCceEEec
Q 024619            8 GVSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSAT--------E-NGPYDYTRSGNPTRDALESLLAKLDKADRALCFT   77 (265)
Q Consensus         8 ~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~--------~-~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~   77 (265)
                      +.++..++-+...+ ..|...+|++++.++..+...        . .+.+.|++.++|.++++++.+++++|.++.++++
T Consensus        25 ~~~t~~~~~~~~~~~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~~i~~s  104 (415)
T 2fq6_A           25 KLDTQLVNAGRSKKYTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFP  104 (415)
T ss_dssp             CHHHHHHHTTCCHHHHTTBSSCCBCCCSCBCCSSHHHHHHHHHTTTTTSCCCTTTCCHHHHHHHHHHHHHHTCSEEEEES
T ss_pred             CcCceeEeCCCCCCCCCCCEeCCeecccceeeCCHHHHHHhhccccCCCccccCCCCchHHHHHHHHHHHhCCCeEEEeC
Confidence            45566777663333 379999999999998765421        1 3568899999999999999999999999899999


Q ss_pred             chHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccc
Q 024619           78 SGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQIC  156 (265)
Q Consensus        78 ~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~  156 (265)
                      +|++|+. ++..++++||+|+++.+.|++....+...++..|+++.+++.+|++++++++++++++|++++|+||+|.+.
T Consensus       105 sGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~d~~~le~ai~~~tklV~~e~~~NptG~v~  184 (415)
T 2fq6_A          105 CGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVH  184 (415)
T ss_dssp             SHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTTCGGGGGGGCCTTEEEEEEESSCTTTCCCC
T ss_pred             CHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEECCCCHHHHHHhhccCCcEEEEECCCCCCCEee
Confidence            9999986 667789999999999999999887776667778999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHH--cCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCC
Q 024619          157 DIRKIAEMAHA--HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG  234 (265)
Q Consensus       157 ~l~~i~~~a~~--~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~  234 (265)
                      |+++|+++|++  +|+++++|++|+.+....+...+.|+++.|++|+++++++.++|+++.+++. .+.+.......+..
T Consensus       185 dl~~I~~la~~~~~g~~livD~a~a~~~~~~p~~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~-~~~l~~~~~~~G~~  263 (415)
T 2fq6_A          185 DVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARC-WEQLRENAYLMGQM  263 (415)
T ss_dssp             CHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTT-HHHHHHHHHHTTCC
T ss_pred             cHHHHHHHHHhhcCCCEEEEECCCcccccCCccccCCeEEEEeCccccCCCCCceEEEEEeCHHH-HHHHHHHHHhcCCC
Confidence            99999999999  9999999999998876667778899999999999977666668999887754 44455555555667


Q ss_pred             CChhHHHHHHhccCchHhhHHHHhhchhc
Q 024619          235 LAPFDCWICLRGVKTMALRVEKQQVCFFD  263 (265)
Q Consensus       235 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  263 (265)
                      +++..++..++.++.+..++++..+|+..
T Consensus       264 ~~~~~a~~~~~~l~~l~~r~~~~~~n~~~  292 (415)
T 2fq6_A          264 VDADTAYITSRGLRTLGVRLRQHHESSLK  292 (415)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            78888888888888887777777776654

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=100.00  E-value=1.1e-33  Score=249.38  Aligned_cols=254  Identities=42%  Similarity=0.709  Sum_probs=205.4

Q ss_pred             CcceeEeeccCCCC-CC-CCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-
Q 024619            8 GVSTLLMNFSNEFD-PY-GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-   84 (265)
Q Consensus         8 ~~~~~~~~~~~~~~-~~-g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-   84 (265)
                      +.++..++-+...+ .. |...+|++++.++..+.......+.|++.++|...++++.+++++|.++.+++++|++|+. 
T Consensus        18 ~~~t~~~h~g~~~~~~~~~~~~~pi~~stt~~~~~~~~~~~~~y~r~~~p~~~~l~~~la~~~g~~~~i~~~sG~~ai~~   97 (403)
T 3cog_A           18 HFATQAIHVGQDPEQWTSRAVVPPISLSTTFKQGAPGQHSGFEYSRSGNPTRNCLEKAVAALDGAKYCLAFASGLAATVT   97 (403)
T ss_dssp             THHHHHHHTTCCGGGSTTCBSSCCBCCCSCBCCC--------------CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHH
T ss_pred             CcccEEEeCCCCCCcCCCCCccCCeeccceeecCCccccCCCcccCCCCchHHHHHHHHHHHhCCCcEEEECCHHHHHHH
Confidence            45577777763323 35 8999999999987765544445678888888999999999999999989999999998886 


Q ss_pred             HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHH
Q 024619           85 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEM  164 (265)
Q Consensus        85 ~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~  164 (265)
                      ++. ++++||+|++++|.|++....+...++..|++++.++.+|++++++++.+++++|++++|+||+|.+.|+++|+++
T Consensus        98 ~~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~i~~~t~~v~~~~p~nptG~~~~l~~i~~l  176 (403)
T 3cog_A           98 ITH-LLKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCSKIKLLEAAITPETKLVWIETPTNPTQKVIDIEGCAHI  176 (403)
T ss_dssp             HHT-TSCTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECTTSHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred             HHH-HhCCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCeeeCHHHHHHH
Confidence            555 8899999999999999877666666788899999999999999999999999999999999999999999999999


Q ss_pred             HHHcC-CEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHH
Q 024619          165 AHAHG-ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC  243 (265)
Q Consensus       165 a~~~~-~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (265)
                      |+++| +++|+|++|+.+....+...+.|+++.|++|++++++++++|+++++++.+.+.+.......+...++..++..
T Consensus       177 a~~~g~~~livD~~~~~~~~~~~~~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~~~~~  256 (403)
T 3cog_A          177 VHKHGDIILVVDNTFMSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLC  256 (403)
T ss_dssp             HTSSSCCEEEEECTTTCTTTCCTTTTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_pred             HHHcCCCEEEEECCCcccccCCccccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            99999 99999999998877667778899999999999988888789999987656666666666666777888888898


Q ss_pred             HhccCchHhhHHHHhhchh
Q 024619          244 LRGVKTMALRVEKQQVCFF  262 (265)
Q Consensus       244 ~~~l~~~~~~~~~~~~~~~  262 (265)
                      ++.++.+..+++++.+|+.
T Consensus       257 ~~~l~~l~~r~~~~~~n~~  275 (403)
T 3cog_A          257 NRGLKTLHVRMEKHFKNGM  275 (403)
T ss_dssp             HHHHTTHHHHHHHHHHHHH
T ss_pred             HhhhhHHHHHHHHHHHHHH
Confidence            8899888777777666653

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=100.00  E-value=2.4e-34  Score=255.07  Aligned_cols=256  Identities=33%  Similarity=0.468  Sum_probs=190.6

Q ss_pred             cceeEeeccCCCC-CCCCCCCCeeeccccccCCCC--------CCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecch
Q 024619            9 VSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSG   79 (265)
Q Consensus         9 ~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g   79 (265)
                      .++..++-+...+ ..|...+|++++.++..+...        ....+.|++.++|..+++++++++++|.+..+++++|
T Consensus        27 ~~t~~~h~~~~~~~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~~v~~~sG  106 (430)
T 3ri6_A           27 FTTRALHVPKAKRDVHGALRTPVYDNAAFEFENSDEIAQVSLGRALGHVYSRSSNPTVEDLEQRLKNLTGALGVLALGSG  106 (430)
T ss_dssp             HHHHHHCCC--------------------------------------------CCHHHHHHHHHHHHHHTCSEEEEESCH
T ss_pred             cchhheeCCCCCCCCCCCcCCCcccccccccCCHHHHHHHhhcccCCccccCCCCHHHHHHHHHHHHHHCCCcEEEECCH
Confidence            4566777764333 478999999999988665432        2246789999999999999999999999999999999


Q ss_pred             HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccH
Q 024619           80 MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI  158 (265)
Q Consensus        80 ~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l  158 (265)
                      ++|+. ++..++++||+|+++++.|+++...+...++..|++++.++.+|++++++++++++++|++++|+||+|.+.|+
T Consensus       107 ~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~d~~~l~~ai~~~t~~v~~e~p~NptG~~~dl  186 (430)
T 3ri6_A          107 MAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAVEHACDETTKLLFLETISNPQLQVADL  186 (430)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHCCTTEEEEEEESSCTTTCCCCCH
T ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhhCCCCeEEEEECCCCCCCeecCH
Confidence            99986 77788999999999999999998766556778899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechh-H-----------------
Q 024619          159 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER-L-----------------  220 (265)
Q Consensus       159 ~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~-~-----------------  220 (265)
                      ++|.++|+++|+++|+|++|+.+....+...+.|+++.|++|+++|++..++|+++.+... +                 
T Consensus       187 ~~i~~la~~~g~~livD~a~~~~~~~~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~  266 (430)
T 3ri6_A          187 EALSKVVHAKGIPLVVDTTMTPPYLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMA  266 (430)
T ss_dssp             HHHHHHHHTTTCCEEEECTTSCTTTCCGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGH
T ss_pred             HHHHHHHHHcCCEEEEECCCcccccCChHHcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhh
Confidence            9999999999999999999999888778888999999999999987766678888854331 1                 


Q ss_pred             --HHHHHHHHHhccCCCChhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619          221 --AKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       221 --~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l  264 (265)
                        ...........+..+++..+++.+++++.+..+++++.+|+..+
T Consensus       267 ~i~~~~~~~~~~~g~~~~~~~a~l~l~~l~~l~~r~~~~~~na~~l  312 (430)
T 3ri6_A          267 FLYKARKEVFQNLGPSLSPHNAYLQSLGLETMALRIERSCQNAQEL  312 (430)
T ss_dssp             HHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence              11122233456777899999999999999999999888887654

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=100.00  E-value=3.3e-33  Score=245.17  Aligned_cols=257  Identities=35%  Similarity=0.600  Sum_probs=211.1

Q ss_pred             CCCCcceeEeeccCCCCCCCCCCCCeeeccccccCCC--------CCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEe
Q 024619            5 EEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSA--------TENGPYDYTRSGNPTRDALESLLAKLDKADRALCF   76 (265)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--------~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~   76 (265)
                      +..+.++..++-+ ..+..|...+|++++.++..+..        .....+.|++.+++..+++++.+++++|.++.+++
T Consensus         2 ~~~~~~t~~~~~~-~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~i~~   80 (389)
T 3acz_A            2 TAQDITTTLLHPK-GDHVLHSHAYPIFQTSTFCFDSTQQGADLFMGKGEGHIYSRLGNPTVEQFEEMVCSIEGAAGSAAF   80 (389)
T ss_dssp             -CCCHHHHHHSCS-SCCSTTBSSCCBCCCSBBCCSSHHHHHHHHTTCSSCCCBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CCCCcceeEEecC-CCCCCCCCCCCcccCCceecCChHHHHHhhcCCCCCcccCCCCChHHHHHHHHHHHHhCCCeEEEe
Confidence            4455667777777 44558999999999999875442        12346889988899999999999999999999999


Q ss_pred             cchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCcccc
Q 024619           77 TSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQI  155 (265)
Q Consensus        77 ~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~  155 (265)
                      ++|++|+. ++..++++||+|+++++.|+++...+...++..|++++.++..|++++++++.+++++|++++|+||+|.+
T Consensus        81 ~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~  160 (389)
T 3acz_A           81 GSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKPNTKMVYLESPANPTCKV  160 (389)
T ss_dssp             SSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEECTTCHHHHHHTCCTTEEEEEEESSCTTTCCC
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCCeEEEEECCCCCCCee
Confidence            99999986 56667899999999999999887666555677899999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCC
Q 024619          156 CDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL  235 (265)
Q Consensus       156 ~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~  235 (265)
                      .|+++|.++|+++|+++|+|++|+.+....+...+.|+++.|++|+++++++..+|+++.++..+.+.+.......+...
T Consensus       161 ~~l~~i~~~~~~~~~~livD~~~~~~~~~~~~~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~g~~~  240 (389)
T 3acz_A          161 SDIKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLM  240 (389)
T ss_dssp             CCHHHHHHHHHHHTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHCCCC
T ss_pred             cCHHHHHHHHHHcCCEEEEECCCccccccCccccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHHhcCCCC
Confidence            99999999999999999999999988766667788999999999999776543349998887344444555544456667


Q ss_pred             ChhHHHHHHhccCchHhhHHHHhhchh
Q 024619          236 APFDCWICLRGVKTMALRVEKQQVCFF  262 (265)
Q Consensus       236 ~~~~~~~~~~~l~~~~~~~~~~~~~~~  262 (265)
                      ++..++..++.++.+..++++..+++.
T Consensus       241 ~~~~~~~~~~~l~~l~~r~~~~~~~~~  267 (389)
T 3acz_A          241 APMDAFLCARGMKTLPIRMQIHMENGL  267 (389)
T ss_dssp             CHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHcCccHHHHHHHHHHHHHH
Confidence            888888888999887777666665544

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=100.00  E-value=9e-33  Score=245.73  Aligned_cols=253  Identities=30%  Similarity=0.539  Sum_probs=210.1

Q ss_pred             ceeEeeccCCCC---CCCCCCCCeeeccccccCCCC--------CCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecc
Q 024619           10 STLLMNFSNEFD---PYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTS   78 (265)
Q Consensus        10 ~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~   78 (265)
                      ++..++-+...+   ..|...+|++++.++..+...        ....+.|++.+++..+++++.+++++|.++.+++++
T Consensus        58 ~t~~~~~~~~~~~~~~~~~~~~Pi~~t~t~~~~~~~~~~~~~~~~~~~~~y~r~~~~~~~~l~~~lA~l~g~~~~v~~~s  137 (445)
T 1qgn_A           58 GSVAIHAGERLGRGIVTDAITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEGAESTLLMAS  137 (445)
T ss_dssp             HHHHHHTTTTTCCSSCCSBSSCCBCCCSBBCBSSHHHHHHHHTTSSCCCCBGGGCCHHHHHHHHHHHHHHTCSEEEEESC
T ss_pred             ccEEEecCCCCCcCCCCCCcCCCcccCCceecCCHHHHHhhhccccCCccccCCCChHHHHHHHHHHHHhCCCcEEEeCC
Confidence            455666664333   478999999999998765421        234678888899999999999999999999999999


Q ss_pred             hHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCc-eEEEEecCCCCccccc
Q 024619           79 GMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWT-KLVWVESPTNPRQQIC  156 (265)
Q Consensus        79 g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~-~~i~~~~~~np~G~~~  156 (265)
                      |++|+. ++..++++||+|+++++.|+++...+...++..|+++++++.+|++++++++++++ ++|++++|+||+|.+.
T Consensus       138 G~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~ai~~~tv~lV~le~p~NptG~v~  217 (445)
T 1qgn_A          138 GMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGALELALNQKKVNLFFTESPTNPFLRCV  217 (445)
T ss_dssp             HHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSSCHHHHHHHHHHSCEEEEEEESSCTTTCCCC
T ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHhccCCCCEEEEeCCCCCCCccc
Confidence            998886 66778999999999999999887665556778899999999999999999998888 9999999999999999


Q ss_pred             cHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCC
Q 024619          157 DIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA  236 (265)
Q Consensus       157 ~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~  236 (265)
                      |+++|.++|+++|+++++|++|+.+....+...+.|+++.|++|++++++.+++|+++.+++.+ +.+.......+..++
T Consensus       218 dl~~I~~la~~~g~~livD~a~~~~~~~~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~-~~l~~~~~~~g~~~~  296 (445)
T 1qgn_A          218 DIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLV-SEIRNLHHILGGALN  296 (445)
T ss_dssp             CHHHHHHHHHHTTCEEEEECTTTCTTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHH-HHHHHHHHHHCCCCC
T ss_pred             CHHHHHHHHHHcCCEEEEECCCcccccCCccccCCEEEEECCcccccccccceEEEEEECHHHH-HHHHHHHHHhCCCCC
Confidence            9999999999999999999999988776777788999999999999765546789998877544 444455555666778


Q ss_pred             hhHHHHHHhccCchHhhHHHHhhchhc
Q 024619          237 PFDCWICLRGVKTMALRVEKQQVCFFD  263 (265)
Q Consensus       237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~  263 (265)
                      +..++..++.++.+..+++++.+++..
T Consensus       297 ~~~a~~~~~~l~~l~~r~~~~~~~a~~  323 (445)
T 1qgn_A          297 PNAAYLIIRGMKTLHLRVQQQNSTALR  323 (445)
T ss_dssp             HHHHHHHHHHGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            888888889999887777777766543

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=100.00  E-value=1.6e-32  Score=241.16  Aligned_cols=252  Identities=40%  Similarity=0.651  Sum_probs=205.0

Q ss_pred             CcceeEeeccCCCCCCCCCCCCeeeccccccCCCCCC-CCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-H
Q 024619            8 GVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATEN-GPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-A   85 (265)
Q Consensus         8 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~   85 (265)
                      +.++..++-+...+..|...+|++++.++..+..... ..+.|++.+++..+++++.+++++|.++.+++++|++|+. +
T Consensus         7 ~~~t~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~la~~~g~~~~i~~~sGt~a~~~a   86 (393)
T 1n8p_A            7 KFATKAIHAGEHVDVHGSVIEPISLSTTFKQSSPANPIGTYEYSRSQNPNRENLERAVAALENAQYGLAFSSGSATTATI   86 (393)
T ss_dssp             CHHHHHHHTTCCCCSSCCSSCCBCCCSBCCBSSSSSBSSSCCBTTTCCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHH
T ss_pred             CccceEEecCCCccCCCCcCCCcccccceeeccccccccCcceecCCChhHHHHHHHHHHHhCCCcEEEECChHHHHHHH
Confidence            4556677766333467999999999999876553322 4678888888889999999999999999999999999986 5


Q ss_pred             HHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHH
Q 024619           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA  165 (265)
Q Consensus        86 ~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a  165 (265)
                      +. ++++||+|+++.|.|++....+...++..|++++.++.+| +++++++.+++++|++++|+||+|.+.|+++|.++|
T Consensus        87 l~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d-~~l~~~i~~~t~lv~~~~~~nptG~~~~l~~i~~la  164 (393)
T 1n8p_A           87 LQ-SLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTNDLL-NDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLI  164 (393)
T ss_dssp             HH-TSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESSHH-HHHHHHSCSSEEEEEECSSCTTTCCCCCHHHHHHHH
T ss_pred             HH-HcCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEeCCCh-HHHHHhcccCceEEEEECCCCCcceecCHHHHHHHH
Confidence            56 8899999999999998776555456788899999999888 999999998999999999999999999999999999


Q ss_pred             HHc----CCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCcee-eEEEeechhHHHHHHHHHHhccCCCChhHH
Q 024619          166 HAH----GALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMA-GVLAVKGERLAKELYFLQNAEGSGLAPFDC  240 (265)
Q Consensus       166 ~~~----~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~-G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (265)
                      +++    |+++|+|++|+.+....+...+.|+++.|+||++ |++|++. |+++.+++.+.+.+.......+..+++..+
T Consensus       165 ~~~~~~~~~~livD~a~~~~~~~~~~~~~~di~~~S~sK~~-g~~G~rigG~~~~~~~~~~~~l~~~~~~~g~~~~~~~~  243 (393)
T 1n8p_A          165 KKHAAGQDVILVVDNTFLSPYISNPLNFGADIVVHSATKYI-NGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDA  243 (393)
T ss_dssp             HHHTTTTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTT-TCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHH
T ss_pred             HHhCCCCCCEEEEeCCccccccCCHHHcCCeEEEEECcccc-cCCCCceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHH
Confidence            999    9999999999977665666678999999999999 5667666 999886555555555555545666677777


Q ss_pred             HHHHhccCchHhhHHHHhhchh
Q 024619          241 WICLRGVKTMALRVEKQQVCFF  262 (265)
Q Consensus       241 ~~~~~~l~~~~~~~~~~~~~~~  262 (265)
                      +...+.++.+..++++..++..
T Consensus       244 ~~~~~~l~~~~~~~~~~~~~~~  265 (393)
T 1n8p_A          244 WLTHRGLKTLHLRVRQAALSAN  265 (393)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHhccchHHHHHHHHHHHHH
Confidence            7777788877666666655544

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=100.00  E-value=2.7e-32  Score=240.55  Aligned_cols=253  Identities=34%  Similarity=0.584  Sum_probs=201.1

Q ss_pred             cceeEeeccCCCCCCCCCCCCeeeccccccCCC--------CCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchH
Q 024619            9 VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSA--------TENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGM   80 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--------~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~   80 (265)
                      .++..++-+...+..+...+|++++.++..+..        ...+.+.|++.|.+..+++++.+++++|.++.+++++|+
T Consensus         8 ~~t~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~l~~~ia~~~g~~~~i~~~~g~   87 (404)
T 1e5e_A            8 PATACIHANPQKDQFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNLEGKIAFLEKTEACVATSSGM   87 (404)
T ss_dssp             HHHHHHHSSCCCCTTCCSSCCCCCCSBCCCSSHHHHHHHHTTSSCSCCBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHH
T ss_pred             ccceeeecCCCCCCCCCcCCCCcCCCccccCCHHHHHHhhcCCcCCccccCCcChHHHHHHHHHHHHhCCCcEEEeCChH
Confidence            345566655222245777778888777654432        123567899888899999999999999999899999999


Q ss_pred             HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHH
Q 024619           81 AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIR  159 (265)
Q Consensus        81 ~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~  159 (265)
                      +|+. ++..++++||+|++++|.|+++...+...++..|++++.++..|++++++++.+++++|++++|+||||.+.|++
T Consensus        88 ~ai~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~t~~v~l~~p~NptG~v~~l~  167 (404)
T 1e5e_A           88 GAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTAIPGEVKKHMKPNTKIVYFETPANPTLKIIDME  167 (404)
T ss_dssp             HHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHHCCTTEEEEEEESSCTTTCCCCCHH
T ss_pred             HHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCCcEEEEECCCCCCCcccCHH
Confidence            9986 667789999999999999999887665566778999999999999999999998999999999999999999999


Q ss_pred             HHHHHHHH-cCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCcee-eEEEeechhHHHHHHHHHHhc-cCCCC
Q 024619          160 KIAEMAHA-HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMA-GVLAVKGERLAKELYFLQNAE-GSGLA  236 (265)
Q Consensus       160 ~i~~~a~~-~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~-G~v~~~~~~~~~~~~~~~~~~-~~~~~  236 (265)
                      +|+++|++ +|+++|+|++|+.+.+..+...+.|+++.|+||+++++ |.+. |+++++++.+.+.+....... +...+
T Consensus       168 ~i~~la~~~~~~~li~De~~~~~~~~~~~~~~~di~~~S~sK~~~~~-g~ri~G~~~~~~~~~~~~l~~~~~~~~g~~~~  246 (404)
T 1e5e_A          168 RVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHSATKYINGH-TDVVAGLICGKADLLQQIRMVGIKDITGSVIS  246 (404)
T ss_dssp             HHHHHHHTSTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCS-SCCCCEEEEECHHHHHHHHHTCCCCCCCCCCC
T ss_pred             HHHHHHHhhcCCEEEEECCCchhhhCCccccCCEEEEEcCccccCCC-CCCeEEEEEECHHHHHHHHHHHHHhCCCCCCC
Confidence            99999999 99999999999988765566678999999999999654 5565 999988866542333333333 45677


Q ss_pred             hhHHHHHHhccCchHhhHHHHhhchh
Q 024619          237 PFDCWICLRGVKTMALRVEKQQVCFF  262 (265)
Q Consensus       237 ~~~~~~~~~~l~~~~~~~~~~~~~~~  262 (265)
                      +..++...+.++.+..+.++...+..
T Consensus       247 ~~~~~~~~~~l~~~~~~~~~~~~~~~  272 (404)
T 1e5e_A          247 PHDAWLITRGLSTLNIRMKAESENAM  272 (404)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence            77888888888877656555555443

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=100.00  E-value=8.3e-31  Score=229.47  Aligned_cols=252  Identities=37%  Similarity=0.572  Sum_probs=201.6

Q ss_pred             cceeEeeccCC-CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-HH
Q 024619            9 VSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AV   86 (265)
Q Consensus         9 ~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~   86 (265)
                      .++..++.+.. .+..|...+|++++.++..........+.|++.+++...++++.+++++|.++.+++++|++|+. ++
T Consensus         5 ~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~~~   84 (386)
T 1cs1_A            5 QATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNEPRAHDYSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVT   84 (386)
T ss_dssp             HHHHHHHTTTTCCTTTCBSSCCBCCCSBBCCSBTTBCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHH
T ss_pred             cceeEEecCCCccccCCCCCCCccccceeeccccCCCCCcceeCCCCccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHH
Confidence            34566676632 34579999999999998765544345678888888889999999999999988999999999986 66


Q ss_pred             HHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHH
Q 024619           87 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAH  166 (265)
Q Consensus        87 ~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~  166 (265)
                      ..++++||+|+++.|.|++....+...++..|.+++.++.+|++++++++.+++++|++++++||||.+.|+++|.++|+
T Consensus        85 ~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~  164 (386)
T 1cs1_A           85 TVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAR  164 (386)
T ss_dssp             HHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTTCHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHH
T ss_pred             HHHhCCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEEeCCCCHHHHHHhhccCCcEEEEeCCCCCCCcccCHHHHHHHHH
Confidence            67789999999999999987665555668889999999999999999999889999999999999999999999999999


Q ss_pred             HcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhc
Q 024619          167 AHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRG  246 (265)
Q Consensus       167 ~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (265)
                      ++|+++|+||+|+.+....+...+.|+++.|++|++++|.+..+|+++.+++.+.+.+.......+...++..++...+.
T Consensus       165 ~~~~~li~De~~~~~~~~~~~~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  244 (386)
T 1cs1_A          165 EVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRG  244 (386)
T ss_dssp             HTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHH
T ss_pred             HcCCEEEEECCCcccccCCccccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhc
Confidence            99999999999998877656667899999999999976655445999888745555555555544555677777766666


Q ss_pred             cCchHhhHHHHhhc
Q 024619          247 VKTMALRVEKQQVC  260 (265)
Q Consensus       247 l~~~~~~~~~~~~~  260 (265)
                      ++.+..+.+...++
T Consensus       245 l~~~~~~~~~~~~~  258 (386)
T 1cs1_A          245 LRTLVPRMELAQRN  258 (386)
T ss_dssp             HTTHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHH
Confidence            66554444444433

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=100.00  E-value=1.9e-31  Score=234.54  Aligned_cols=258  Identities=36%  Similarity=0.597  Sum_probs=201.1

Q ss_pred             CCCcceeEeeccCCC-CCCCCCCCCeeeccccccCCCC--------CCCCCccCCCCChhHHHHHHHHHhHhCCCceEEe
Q 024619            6 EPGVSTLLMNFSNEF-DPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCF   76 (265)
Q Consensus         6 ~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~   76 (265)
                      ..+.++..++-+... +..+...+|++++.++..+...        ....+.|++.+++..+++++.+++++|.++.+++
T Consensus         7 ~~~~~t~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~la~~~g~~~~i~~   86 (398)
T 1gc0_A            7 LPGFATRAIHHGYDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGLAL   86 (398)
T ss_dssp             CCCHHHHHHHTTCCGGGGTTBSSCCBCCCSCBCCC---------------------CCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CCCcCceeEeCCCCCCCCCCCcCCCccCCCccccCCHHHHHHhhcCCcCCCcccCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence            345566777766322 3478888999998887654421        1234667777889999999999999999999999


Q ss_pred             cchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCcccc
Q 024619           77 TSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQI  155 (265)
Q Consensus        77 ~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~  155 (265)
                      ++|++|+. ++..++++||+|+++.+.|+++...+...++..|++++.++..|++++++++.+++++|++++|+||+|.+
T Consensus        87 ~sG~~a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~  166 (398)
T 1gc0_A           87 ASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHM  166 (398)
T ss_dssp             SSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCTTEEEEEEESSCTTTCCC
T ss_pred             CCHHHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCCeEEEEECCCCCCccc
Confidence            99999886 67778899999999999999988776555677899999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHh-ccCC
Q 024619          156 CDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA-EGSG  234 (265)
Q Consensus       156 ~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~-~~~~  234 (265)
                      .|+++|.++|+++|+++|+|++|+.+....+...+.|+++.|++|+++++++-.+|+++.+++.+.......... .+..
T Consensus       167 ~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~  246 (398)
T 1gc0_A          167 ADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAV  246 (398)
T ss_dssp             CCHHHHHHHHGGGTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCC
T ss_pred             ccHHHHHHHHHHcCCEEEEECCCcccccCCchhhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhccCCCC
Confidence            999999999999999999999999877666667789999999999997665433599988876655444444444 5566


Q ss_pred             CChhHHHHHHhccCchHhhHHHHhhchhc
Q 024619          235 LAPFDCWICLRGVKTMALRVEKQQVCFFD  263 (265)
Q Consensus       235 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  263 (265)
                      +++..++...+.++.+..+.++..+++..
T Consensus       247 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  275 (398)
T 1gc0_A          247 LSPHDAALLMRGIKTLNLRMDRHCANAQV  275 (398)
T ss_dssp             CCHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            78888888888888776666666666543

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=99.98  E-value=1.3e-30  Score=229.10  Aligned_cols=251  Identities=41%  Similarity=0.680  Sum_probs=193.6

Q ss_pred             ceeEeeccCCCC-CCCCCCCCeeeccccccCCC--------CCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchH
Q 024619           10 STLLMNFSNEFD-PYGALSTPLYQTATFKQPSA--------TENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGM   80 (265)
Q Consensus        10 ~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~--------~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~   80 (265)
                      .+..++-+...| ..+...+|++.+.+...+..        .....+.|++.+.+..+++++++++++|.++.+++++|+
T Consensus        10 ~t~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~i~~~sG~   89 (398)
T 2rfv_A           10 NTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERGEAGLATASGI   89 (398)
T ss_dssp             HHHHHHTTCCCCTTTCCSSCCCCCCSBCCCSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHH
T ss_pred             ceeEeecCCcCccCCCCcCCCCcCCCccccCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhCCCcEEEECCHH
Confidence            445555442222 23455555555555333221        123457787777788999999999999999999999999


Q ss_pred             HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHH
Q 024619           81 AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIR  159 (265)
Q Consensus        81 ~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~  159 (265)
                      +|+. ++..++++||+|++++|.|+++...+...++..|.+++.++.+|++++++++.+++++|++++|+||||.+.|++
T Consensus        90 ~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~  169 (398)
T 2rfv_A           90 SAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIE  169 (398)
T ss_dssp             HHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTTSHHHHHHHCCTTEEEEEEESSBTTTTBCCCHH
T ss_pred             HHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhcCCCCeEEEEECCCCCCCcccCHH
Confidence            9986 677788999999999999999886665555778999999999999999999998999999999999999999999


Q ss_pred             HHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCcee-eEEEeechhHHHHHHHHHHhc-cCCCCh
Q 024619          160 KIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMA-GVLAVKGERLAKELYFLQNAE-GSGLAP  237 (265)
Q Consensus       160 ~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~-G~v~~~~~~~~~~~~~~~~~~-~~~~~~  237 (265)
                      +|.++|+++|+++|+|++|+.+....+...+.|+++.|+||++++| |.+. |+++.+++.+........... +...++
T Consensus       170 ~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~di~~~s~sK~~~~~-g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (398)
T 2rfv_A          170 TVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGH-GDVIGGIIVGKQEFIDQARFVGLKDITGGCMSP  248 (398)
T ss_dssp             HHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCS-SCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCH
T ss_pred             HHHHHHHHcCCEEEEECCCcccccCCchhhCCcEEEEeCcccccCC-CCceEEEEEECHHHHHHHHHHHHHhCCCCCCCH
Confidence            9999999999999999999988876666778999999999999665 4455 999988766543444444444 556777


Q ss_pred             hHHHHHHhccCchHhhHHHHhhch
Q 024619          238 FDCWICLRGVKTMALRVEKQQVCF  261 (265)
Q Consensus       238 ~~~~~~~~~l~~~~~~~~~~~~~~  261 (265)
                      ..++...+.++.+..++++..++.
T Consensus       249 ~~~~~~~~~l~~~~~~~~~~~~~~  272 (398)
T 2rfv_A          249 FNAWLTLRGVKTLGIRMERHCENA  272 (398)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHH
Confidence            778887788877655555554444

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=99.97  E-value=1.5e-29  Score=223.54  Aligned_cols=251  Identities=33%  Similarity=0.501  Sum_probs=191.0

Q ss_pred             ceeEeeccCCCCCCCCCCCCeeeccccccCCCC-------CCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHH
Q 024619           10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSAT-------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAA   82 (265)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~a   82 (265)
                      ++..++-+...+..|...+|++++.++..+...       ....+.|++.+++..+++++++++++|.++++++++|++|
T Consensus         4 ~t~~~~~~~~~~~~~~~~~pi~~s~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~~~~~~gt~a   83 (412)
T 2cb1_A            4 TTLAVLAGLPEDPHGAVGLPIYAVAAYGFKTLEEGQERFATGEGYVYARQKDPTAKALEERLKALEGALEAVVLASGQAA   83 (412)
T ss_dssp             HHHHHHTTCCCCTTCCSSCCCCCCSBCCCSSHHHHHHHHHHCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHH
T ss_pred             cceeeecCCCcCCCCCcCCCccccceeecCChHHHHHHhccccCcCcCCCCChHHHHHHHHHHHHhCCCcEEEECCHHHH
Confidence            344555553223478888999998766543310       1346788888888999999999999999988899999999


Q ss_pred             HH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHH
Q 024619           83 LA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKI  161 (265)
Q Consensus        83 l~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i  161 (265)
                      +. ++..++++||+|+++.|.|+++...+...++..|++++.++.+ ++++++++.+++++|++++|+||+|.+.|+++|
T Consensus        84 ~~~al~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i  162 (412)
T 2cb1_A           84 TFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDPE-PEAVREALSAKTRAVFVETVANPALLVPDLEAL  162 (412)
T ss_dssp             HHHHHHTTCCTTCEEEEETTCCHHHHHHHHHTTTTTTCEEEEECSS-HHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHH
T ss_pred             HHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-HHHHHHHhccCCeEEEEeCCCCCCcccccHHHH
Confidence            86 6677789999999999999887766655578889999999875 999999999999999999999999999999999


Q ss_pred             HHHHHHcCCEEEEeCCcCCC-CCcCCCCCCccEEEeccccccccCCCceeeEEEeech----------------------
Q 024619          162 AEMAHAHGALLLVDNSIMSP-VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE----------------------  218 (265)
Q Consensus       162 ~~~a~~~~~~li~D~~~~~~-~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~----------------------  218 (265)
                      .++|+++|+++|+|++|+.+ ....+...+.|+++.|++|++++|++..+|+++.++.                      
T Consensus       163 ~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  242 (412)
T 2cb1_A          163 ATLAEEAGVALVVDNTFGAAGALCRPLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEA  242 (412)
T ss_dssp             HHHHHHHTCEEEEECGGGTTTTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHH
T ss_pred             HHHHHHcCCEEEEECCCccccccCCccccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhhc
Confidence            99999999999999999987 4455666789999999999997765533555554433                      


Q ss_pred             ----hHHHHHHHHH-HhccCCCChhHHHHHHhccCchHhhHHHHhhch
Q 024619          219 ----RLAKELYFLQ-NAEGSGLAPFDCWICLRGVKTMALRVEKQQVCF  261 (265)
Q Consensus       219 ----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  261 (265)
                          .+....+... ...+..+++..++..+..++.+..+.++..++.
T Consensus       243 ~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~~~~~~~~~~~  290 (412)
T 2cb1_A          243 LRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLETVALRVARMSETA  290 (412)
T ss_dssp             HGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGGGHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCchHHHHHHHHHHHH
Confidence                1222222221 223345677778888888887765555444433

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.97  E-value=2e-29  Score=223.36  Aligned_cols=254  Identities=33%  Similarity=0.466  Sum_probs=197.7

Q ss_pred             ceeEeeccCCCC-CCCCCCCCeeeccccccCCC--------CCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchH
Q 024619           10 STLLMNFSNEFD-PYGALSTPLYQTATFKQPSA--------TENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGM   80 (265)
Q Consensus        10 ~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~--------~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~   80 (265)
                      ++..++-+...+ ..|...+|++++.++..+..        .....+.|++.+++..+++++.+++++|.++.+++++|+
T Consensus         4 ~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~v~~~sGt   83 (421)
T 2ctz_A            4 ETLQLHAGYEPEPTTLSRQVPIYPTTSYVFKSPEHAANLFALKEFGNIYSRIMNPTVDVLEKRLAALEGGKAALATASGH   83 (421)
T ss_dssp             HHHHHHTTCCCCTTTCBSSCCBCCCSCBCCSCHHHHHHHHTTTTGGGSCBTTBCHHHHHHHHHHHHHHTCSEEEEESSHH
T ss_pred             ceeeeeCCCCCCcCCCCccCCeeccceeeeCCHHHHHHhhccccCCCcccCCCChHHHHHHHHHHHHhCCCceEEecCHH
Confidence            344555553223 47899999999998765442        123467788888889999999999999998889999999


Q ss_pred             HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEee-cCCCHHHHHhhcCCCceEEEEecCCCCccccccH
Q 024619           81 AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV-NTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI  158 (265)
Q Consensus        81 ~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l  158 (265)
                      +|+. ++..++++||+|+++.+.|+++...+...++..|++++.+ +.+|++++++++.+++++|++++++||+|.+.|+
T Consensus        84 ~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l  163 (421)
T 2ctz_A           84 AAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREERPEEFLALTDEKTRAWWVESIGNPALNIPDL  163 (421)
T ss_dssp             HHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCH
T ss_pred             HHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHhhccCCeEEEEECCCCCCCcccCH
Confidence            9986 6667789999999999999998877655557789999999 9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCCc-CCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeech-hH----HHHH--------
Q 024619          159 RKIAEMAHAHGALLLVDNSI-MSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE-RL----AKEL--------  224 (265)
Q Consensus       159 ~~i~~~a~~~~~~li~D~~~-~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~-~~----~~~~--------  224 (265)
                      ++|.++|+++|+++|+|++| +.+....+...+.|+++.|++|++++|++..+|+++.+++ .+    ...+        
T Consensus       164 ~~i~~~a~~~g~~livD~~~~~~g~~~~~~~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~  243 (421)
T 2ctz_A          164 EALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYH  243 (421)
T ss_dssp             HHHHHHHHHHTCEEEEECGGGGGGTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGT
T ss_pred             HHHHHHHHHcCCEEEEECCcccccccCCccccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhh
Confidence            99999999999999999999 8776556667789999999999997654333455554221 11    0000        


Q ss_pred             --------------HH----HHHhccCCCChhHHHHHHhccCchHhhHHHHhhchhc
Q 024619          225 --------------YF----LQNAEGSGLAPFDCWICLRGVKTMALRVEKQQVCFFD  263 (265)
Q Consensus       225 --------------~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  263 (265)
                                    ..    .....+..+++..++..+++++.+..+.+++.+++..
T Consensus       244 g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~  300 (421)
T 2ctz_A          244 GLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLH  300 (421)
T ss_dssp             TBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             hhhhhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcchHHHHHHHHHHhHHH
Confidence                          00    0122455788888899889999887666666665544

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=99.96  E-value=1.8e-27  Score=209.53  Aligned_cols=209  Identities=20%  Similarity=0.223  Sum_probs=168.2

Q ss_pred             hhHHHHHHHHHhHhCCCceEE---ecchHHHHH-HHHHhcCCCCEEEEcC-CCCCChHHHHH------hhcCCCCeEEEe
Q 024619           55 PTRDALESLLAKLDKADRALC---FTSGMAALA-AVTHLLGTGEEIVAGD-DLYGGTDRLLS------RVTPKTGVVVKR  123 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~---~~~g~~al~-~~~~~~~~g~~viv~~-~~~~~~~~~~~------~~~~~~g~~~~~  123 (265)
                      +.++++++.+++++|.+..++   +++|++|+. ++..++++||+|++++ +.|+.+...+.      ..++..|+++++
T Consensus        59 ~~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~  138 (409)
T 3jzl_A           59 EGRDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSS  138 (409)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEETTSCSHHHHHHHHHHHHCCTTCEEEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEEE
T ss_pred             hHHHHHHHHHHHHhCCCcEEEECCCccHHHHHHHHHHHhcCCCCEEEEeCCCCcHhHHHHHhcccchhhHHHHcCCEEEE
Confidence            348999999999999998888   789999986 7778899999999998 99998875442      355678999999


Q ss_pred             ecC-----CCHHHHHhhcCCCceEEEEec----CCCCccccccHHHHHHHHHH--cCCEEEEeCCcCCCCC-cCCCCCCc
Q 024619          124 VNT-----CDLDEVASAIGPWTKLVWVES----PTNPRQQICDIRKIAEMAHA--HGALLLVDNSIMSPVL-SRPLELGA  191 (265)
Q Consensus       124 ~~~-----~d~~~l~~~~~~~~~~i~~~~----~~np~G~~~~l~~i~~~a~~--~~~~li~D~~~~~~~~-~~~~~~~~  191 (265)
                      ++.     .|++++++++++++++|++++    |+||+|.+.|+++|+++|++  +|+++++|++|+.+.. ..+...+.
T Consensus       139 v~~~~~g~~d~e~l~~ai~~~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD~a~~~~~~~~~p~~~g~  218 (409)
T 3jzl_A          139 VPLLENGDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPPEVGA  218 (409)
T ss_dssp             CCCCTTSCCCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTTSSCCSGGGTC
T ss_pred             eCCCCCCCcCHHHHHHhccCCCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEeCCcccccccCCccccCC
Confidence            998     699999999999999999999    99999999999999999999  9999999999998873 46777889


Q ss_pred             cEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHh--cc--CCCChhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619          192 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA--EG--SGLAPFDCWICLRGVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       192 di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l  264 (265)
                      |++++|++|+++|+...++|+++++++.+ +.+......  .+  ........+.+++.++.+..+++++.+|+..+
T Consensus       219 Div~~S~sK~lgg~~~~~GG~v~~~~~li-~~l~~~~~~~~~g~~~g~~~~~~~~~l~gl~~~~~r~~~~~~~a~~l  294 (409)
T 3jzl_A          219 DIIAGSLIKNPGGGLAKTGGYIAGKEALV-DLCGYRLTTPGIGREAGASLYSLLEMYQGFFLAPHVTAQAIKGARFT  294 (409)
T ss_dssp             SEEEEETTSGGGTTTCSSCEEEEECHHHH-HHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEECccccCCccCCceEEEEEeCHHHH-HHHHHHhccccccccccccHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            99999999999765445679998876544 434333221  11  22222235667888888888888888776543

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=99.95  E-value=1.4e-27  Score=210.95  Aligned_cols=208  Identities=20%  Similarity=0.252  Sum_probs=169.8

Q ss_pred             hHHHHHHHHHhHhCCCceEE---ecchHHHHH-HHHHhcCCCCEEEEcC-CCCCChHHHH-------HhhcCCCCeEEEe
Q 024619           56 TRDALESLLAKLDKADRALC---FTSGMAALA-AVTHLLGTGEEIVAGD-DLYGGTDRLL-------SRVTPKTGVVVKR  123 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~~~i~---~~~g~~al~-~~~~~~~~g~~viv~~-~~~~~~~~~~-------~~~~~~~g~~~~~  123 (265)
                      .++++++.+++++|.+..++   +++|++|+. ++.+++++||+|++++ +.|+.+...+       ...++..|++++.
T Consensus        74 ~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~  153 (427)
T 3i16_A           74 GRDSLDAVYARVFNTESALVRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQ  153 (427)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEE
T ss_pred             HHHHHHHHHHHHhCCcceEEeCCCccHHHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhccccchHHHHHHcCCEEEE
Confidence            48999999999999998888   899999986 7788999999999998 9998886554       1445667999999


Q ss_pred             ecC-----CCHHHHHhhcC--CCceEEEEec----CCCCccccccHHHHHHHHHH--cCCEEEEeCCcCCCC-CcCCCCC
Q 024619          124 VNT-----CDLDEVASAIG--PWTKLVWVES----PTNPRQQICDIRKIAEMAHA--HGALLLVDNSIMSPV-LSRPLEL  189 (265)
Q Consensus       124 ~~~-----~d~~~l~~~~~--~~~~~i~~~~----~~np~G~~~~l~~i~~~a~~--~~~~li~D~~~~~~~-~~~~~~~  189 (265)
                      ++.     .|+++++++++  +++++|++++    |+||+|.+.|+++|+++|++  +|+++++|++|+.+. ...+...
T Consensus       154 v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a~~~~~~~~~p~~~  233 (427)
T 3i16_A          154 VDLKEDGKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPTDV  233 (427)
T ss_dssp             CCCCTTSSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECTTTTTSSSSCGGGG
T ss_pred             ecCccCCCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECCCccccccCCcccc
Confidence            997     58999999998  7899999999    99999999999999999999  999999999999887 4567778


Q ss_pred             CccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHH--hccCCCCh-hH-HHHHHhccCchHhhHHHHhhchhcc
Q 024619          190 GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--AEGSGLAP-FD-CWICLRGVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       190 ~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~--~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~~~~~l  264 (265)
                      +.|++++|+||+++++...++|+++++++.+ +.+.....  ..+..+.+ .. ++.+++.++.+..+++++.+|+..+
T Consensus       234 gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li-~~l~~~~~~~~~g~~~~~~~~~a~~~l~gl~~~~~r~~~~~~~a~~l  311 (427)
T 3i16_A          234 GADLIAGSLIKNIGGGIAPTGGYLAGTKDCI-EKTSYRLTVPGIGGECGSTFGVVRSMYQGLFLAPHISMEALKGAILC  311 (427)
T ss_dssp             TCSEEEEETTSGGGTTTCCSCEEEEECHHHH-HHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEecCcccCCCCCCceEEEEEECHHHH-HHHHHhcccCccCccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999664435689998876554 43333222  22223333 33 7888999998888888888887643

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=99.95  E-value=4.6e-28  Score=207.51  Aligned_cols=192  Identities=35%  Similarity=0.593  Sum_probs=154.8

Q ss_pred             HHHHHHHhHhCCCceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcC
Q 024619           59 ALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG  137 (265)
Q Consensus        59 ~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~  137 (265)
                      ++++.+++++|.++.+++++|++|+. ++..++++||+|++++|+|+++...+...++..|.+++.++..|+++++++++
T Consensus         2 ~l~~~la~~~g~~~~i~~~sG~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~   81 (331)
T 1pff_A            2 ALEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNIEKHLK   81 (331)
T ss_dssp             HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHTCC
T ss_pred             hHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCCCCHHHHHHhhc
Confidence            68899999999999999999999986 66667899999999999999987665443456799999999999999999999


Q ss_pred             CCceEEEEecCCCCccccccHHHHHHHHHH-cCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCce-eeEEEe
Q 024619          138 PWTKLVWVESPTNPRQQICDIRKIAEMAHA-HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVM-AGVLAV  215 (265)
Q Consensus       138 ~~~~~i~~~~~~np~G~~~~l~~i~~~a~~-~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~-~G~v~~  215 (265)
                      +++++|++++|+||||.+.|+++|.++|++ +|+++|+|++|+.+....+...+.|++++|+||++++| |.+ +|+++.
T Consensus        82 ~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~~~-~~r~~G~~~~  160 (331)
T 1pff_A           82 PNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPLDLGVDIVVHSATKYINGH-TDVVAGLVCS  160 (331)
T ss_dssp             TTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTSSS-SSCCCEEEEE
T ss_pred             CCCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccCChhhcCCcEEEEECccccCCC-CCceEEEEEe
Confidence            899999999999999999999999999999 99999999999977665555678999999999999665 455 789988


Q ss_pred             echhHHHHHHHHHHh-ccCCCChhHHHHHHhccCchH
Q 024619          216 KGERLAKELYFLQNA-EGSGLAPFDCWICLRGVKTMA  251 (265)
Q Consensus       216 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~  251 (265)
                      +++.+.+.+...... .+...++..++...+.++.+.
T Consensus       161 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~  197 (331)
T 1pff_A          161 RADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLD  197 (331)
T ss_dssp             CHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcchHH
Confidence            773444433333333 344566666665555555443

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=99.95  E-value=2.1e-27  Score=209.78  Aligned_cols=215  Identities=21%  Similarity=0.236  Sum_probs=172.0

Q ss_pred             CCccCCCCChhHHHHHHHHHhHhCCCceEE---ecchHHHHH-HHHHhcCCCCEEEEcC-CCCCChHHHHH-------hh
Q 024619           46 PYDYTRSGNPTRDALESLLAKLDKADRALC---FTSGMAALA-AVTHLLGTGEEIVAGD-DLYGGTDRLLS-------RV  113 (265)
Q Consensus        46 ~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~---~~~g~~al~-~~~~~~~~g~~viv~~-~~~~~~~~~~~-------~~  113 (265)
                      .+.|++.   .++++++.+++++|++..++   ++||++|+. ++.++++|||+|++++ +.|+.+...+.       ..
T Consensus        68 gy~Y~~~---g~~~Le~~lA~l~g~e~alv~p~~~sGt~A~~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~  144 (427)
T 3hvy_A           68 GYGYNDI---GRDSLDRVYANIFNTESAFVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPYDTLHDIIGMDDSKKVGS  144 (427)
T ss_dssp             TTCTTCH---HHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHTCCTTCEEEECSSSCCGGGHHHHTCCTTCCSCC
T ss_pred             CCCCCch---hHHHHHHHHHHHhCCCceEEeCCCCcHHHHHHHHHHHhcCCCCEEEEeCCCCchhHHHHhccccchhhhH
Confidence            3445444   48999999999999998888   799999986 7788999999999998 99988864441       34


Q ss_pred             cCCCCeEEEeecC----CCHHHHHhhcC--CCceEEEEec----CCCCccccccHHHHHHHHHH--cCCEEEEeCCcCCC
Q 024619          114 TPKTGVVVKRVNT----CDLDEVASAIG--PWTKLVWVES----PTNPRQQICDIRKIAEMAHA--HGALLLVDNSIMSP  181 (265)
Q Consensus       114 ~~~~g~~~~~~~~----~d~~~l~~~~~--~~~~~i~~~~----~~np~G~~~~l~~i~~~a~~--~~~~li~D~~~~~~  181 (265)
                      ++..|++++.++.    .|+++++++++  +++++|++++    |+||+|.+.|+++|+++|++  +|+++++|++|+.+
T Consensus       145 l~~~G~~~~~v~~~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~~~~  224 (427)
T 3hvy_A          145 LREYGVKYKMVDLKDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEF  224 (427)
T ss_dssp             TGGGTCEEEECCCBTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTTCTT
T ss_pred             HHHcCCEEEEecCCCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCcccc
Confidence            5668999999998    79999999998  8899999999    99999999999999999999  89999999999988


Q ss_pred             C-CcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHH--hccC--CCChhHHHHHHhccCchHhhHHH
Q 024619          182 V-LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--AEGS--GLAPFDCWICLRGVKTMALRVEK  256 (265)
Q Consensus       182 ~-~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~l~~~~~~~~~  256 (265)
                      . ...+...+.|++++|+||+++|+...++|+++++++.+ +.+.....  ..+.  ..+...++.+++.++.+..++++
T Consensus       225 ~~~~~p~~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li-~~l~~~~~~~~~g~~~~~~~~~a~~~~~gl~~~~~r~~~  303 (427)
T 3hvy_A          225 VEEKEPTDVGADIIAGSLIKNIGGGIATTGGYIAGKEEYV-TQATFRVTVPGIGGECGSTFGVMRSLYEGLFMAPHVTIE  303 (427)
T ss_dssp             TSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHH-HHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCcccCCeEEEECCcccccccccceEEEEEECHHHH-HHHHHHhhcCCcccccCCCHHHHHHHHHhHhHHHHHHHH
Confidence            7 45677788999999999999764335679998876544 43443322  1221  12233478888899888888888


Q ss_pred             Hhhchhcc
Q 024619          257 QQVCFFDL  264 (265)
Q Consensus       257 ~~~~~~~l  264 (265)
                      +.+|+..+
T Consensus       304 ~~~~a~~l  311 (427)
T 3hvy_A          304 AVKGAVFC  311 (427)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88877643

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=99.95  E-value=5.9e-27  Score=205.14  Aligned_cols=230  Identities=16%  Similarity=0.153  Sum_probs=167.7

Q ss_pred             ceeEeeccCCCCCCCCCCCCeeeccccccCCCCCC--CCCccCCCCC-hhHHHHHHHHHhHhCCCceEEecchHHHHH-H
Q 024619           10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSATEN--GPYDYTRSGN-PTRDALESLLAKLDKADRALCFTSGMAALA-A   85 (265)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~y~~~g~-~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~   85 (265)
                      +..+++|+ +++++|..++|.+.............  ....|. .|. +..+++++.+++++|.++.+++++|++++. +
T Consensus        42 g~~~id~~-~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~-~g~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~~  119 (399)
T 3tqx_A           42 EKEVLNFC-ANNYLGLADHPALIKTAQTVVEQYGFGMASVRFI-CGTQTIHKELEKDISEFLGTDDTILYSSCFDANGGL  119 (399)
T ss_dssp             TEEEEECS-SCCTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCC-CCCBHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTT
T ss_pred             CeeEEEee-ccCcccccCCHHHHHHHHHHHHHhCCCCCCcCcc-ccCchHHHHHHHHHHHHHCCCcEEEECchHHHHHHH
Confidence            35789999 77888865555554433221110111  111121 233 569999999999999999999999998886 7


Q ss_pred             HHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCC------CceEEEEecCCCCccccccHH
Q 024619           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP------WTKLVWVESPTNPRQQICDIR  159 (265)
Q Consensus        86 ~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~------~~~~i~~~~~~np~G~~~~l~  159 (265)
                      +..++++||.|+++.|+|+++.    ..++..|.+++.++..|++++++.+.+      ++++|++++++||||.+.|++
T Consensus       120 l~~~~~~gd~v~~~~~~~~~~~----~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~l~  195 (399)
T 3tqx_A          120 FETLLGPEDAIISDELNHASII----DGIRLCKAQRYRYKNNAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIADLK  195 (399)
T ss_dssp             HHHHCCTTCEEEEETTCCHHHH----HHHHSCCSEEEEECTTCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECCHH
T ss_pred             HHHhcCCCCEEEECCcccHHHH----HHHHHcCCceeEeCCCCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCCHH
Confidence            7788999999999999999886    455678999999998899999888864      899999999999999999999


Q ss_pred             HHHHHHHHcCCEEEEeCCcCCCCCcCC----C-----CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHH-
Q 024619          160 KIAEMAHAHGALLLVDNSIMSPVLSRP----L-----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN-  229 (265)
Q Consensus       160 ~i~~~a~~~~~~li~D~~~~~~~~~~~----~-----~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~-  229 (265)
                      +|.++|+++|+++|+||+|+.+.....    .     ..+.|++++|+||+++|++   +|+++.+++.+......... 
T Consensus       196 ~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~---gG~~~~~~~~~~~~~~~~~~~  272 (399)
T 3tqx_A          196 SICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGGAS---GGYTSGHKEIIEWLRNRSRPY  272 (399)
T ss_dssp             HHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSCSSC---CEEEEECHHHHHHHHHHCHHH
T ss_pred             HHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcccCc---eEEEEcCHHHHHHHHHhCcce
Confidence            999999999999999999986654321    1     2267999999999996454   59998877554333222121 


Q ss_pred             hccCCCChhHHHHHHhccC
Q 024619          230 AEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       230 ~~~~~~~~~~~~~~~~~l~  248 (265)
                      ......++...+.+...++
T Consensus       273 ~~~~~~~~~~~~~~~~~l~  291 (399)
T 3tqx_A          273 LFSNTVAPVIVATSLKVLE  291 (399)
T ss_dssp             HSSCCCCHHHHHHHHHHHH
T ss_pred             eccCCCcHHHHHHHHHHHH
Confidence            2333555555444443333

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=99.95  E-value=2.4e-27  Score=208.25  Aligned_cols=228  Identities=19%  Similarity=0.142  Sum_probs=167.6

Q ss_pred             eEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCC-----CceEEecchHHHHH
Q 024619           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKA-----DRALCFTSGMAALA   84 (265)
Q Consensus        12 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~-----~~~i~~~~g~~al~   84 (265)
                      .+|+|+ ++++.+..++|.+..+.....  .....+.|.+. |.+ .++++++++++++|.     +.++++++|++++.
T Consensus        40 ~~id~~-~g~~~~~~~~~~v~~a~~~~~--~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~  116 (407)
T 3nra_A           40 RPVDFS-HGDVDAHEPTPGAFDLFSAGV--QSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALF  116 (407)
T ss_dssp             CCEETT-SCCTTTSCCCTTHHHHHHHHH--HHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHH
T ss_pred             ceeeec-CcCCCCCCCcHHHHHHHHHHH--hcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHH
Confidence            589999 878876555555444322111  11123357665 665 599999999999986     45666666679986


Q ss_pred             -HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC-----------CCHHHHHhhcCCCceEEEEecCCCCc
Q 024619           85 -AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----------CDLDEVASAIGPWTKLVWVESPTNPR  152 (265)
Q Consensus        85 -~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----------~d~~~l~~~~~~~~~~i~~~~~~np~  152 (265)
                       ++..++++||+|+++.|+|+++.    ..++..|.+++.++.           .|++++++++.+++++|++++|+|||
T Consensus       117 ~~~~~l~~~gd~vl~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~npt  192 (407)
T 3nra_A          117 LAVAATVARGDKVAIVQPDYFANR----KLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPA  192 (407)
T ss_dssp             HHHHTTCCTTCEEEEEESCCTHHH----HHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHTTCCEEEEESSCTTT
T ss_pred             HHHHHhCCCCCEEEEcCCcccchH----HHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhhCCcEEEEcCCCCCC
Confidence             66778899999999999999887    444667888888876           28999999998889999999999999


Q ss_pred             ccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc-----CC-----CCCCccEEEeccccccccCCCceeeEEEeechh
Q 024619          153 QQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGER  219 (265)
Q Consensus       153 G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~-----~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~  219 (265)
                      |.+.+   +++|+++|++||+++|+||+|+.+.+.     ..     ...+.++++.|+||++ |.+|+++|+++.+++ 
T Consensus       193 G~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~-  270 (407)
T 3nra_A          193 GVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTE-SLSGYRLGVAFGSRA-  270 (407)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTT-CCGGGCCEEEEECHH-
T ss_pred             CcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCccccc-CCCeeeEEEEEcCHH-
Confidence            99988   899999999999999999999864432     11     1245679999999999 667889999988664 


Q ss_pred             HHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619          220 LAKELYFLQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      +.+.+...........++..+..+...++
T Consensus       271 ~~~~l~~~~~~~~~~~~~~~~~a~~~~l~  299 (407)
T 3nra_A          271 IIARMEKLQAIVSLRAAGYSQAVLRGWFD  299 (407)
T ss_dssp             HHHHHHHHHHHHTSSSCHHHHGGGGGTTC
T ss_pred             HHHHHHHHHhhhccCCChHHHHHHHHHHh
Confidence            44444444444444555555544444444

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=99.95  E-value=6.7e-27  Score=207.32  Aligned_cols=225  Identities=17%  Similarity=0.190  Sum_probs=165.6

Q ss_pred             ceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CC-hhHHHHHHHHHhHhCCCceEEecchHHHHH-HH
Q 024619           10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GN-PTRDALESLLAKLDKADRALCFTSGMAALA-AV   86 (265)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~-~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~   86 (265)
                      +..+|+|+ +++|+|..++|.+.................|... |. +...++++.+++++|.++.+++++|++|+. ++
T Consensus        63 g~~~id~~-~~~~lg~~~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~al  141 (427)
T 2w8t_A           63 GKDTILLG-TYNYMGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYGTTGAIVFSTGYMANLGII  141 (427)
T ss_dssp             TEEEEECS-CCCTTCGGGCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHH
T ss_pred             CceEEEEE-CcccccCCCCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHhCCCceEEecCcHHHHHHHH
Confidence            46789999 8888886566655443322111111111122222 54 568999999999999999999999998875 67


Q ss_pred             HHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCC----CceEEEEecCCCCccccccHHHHH
Q 024619           87 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP----WTKLVWVESPTNPRQQICDIRKIA  162 (265)
Q Consensus        87 ~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~----~~~~i~~~~~~np~G~~~~l~~i~  162 (265)
                      ..++++||.|+++.|.|+++...+    +..|.+++.++..|++++++.+.+    ++++|++++++||+|.+.|+++|.
T Consensus       142 ~~l~~~gd~vl~~~~~h~~~~~~~----~~~g~~~~~~~~~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~l~~l~  217 (427)
T 2w8t_A          142 STLAGKGEYVILDADSHASIYDGC----QQGNAEIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMV  217 (427)
T ss_dssp             HHHSCTTCEEEEETTCCHHHHHHH----HHSCSEEEEECTTCHHHHHHHHHTSCSSSCEEEEEESEETTTTEECCHHHHH
T ss_pred             HHhcCCCCEEEECCcccHHHHHHH----HHcCCeeEEeCCCCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccCHHHHH
Confidence            778899999999999999887443    456889999999999999998864    789999999999999999999999


Q ss_pred             HHHHHcCCEEEEeCCcCCCCCc---------CCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHH-HHHhcc
Q 024619          163 EMAHAHGALLLVDNSIMSPVLS---------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-LQNAEG  232 (265)
Q Consensus       163 ~~a~~~~~~li~D~~~~~~~~~---------~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~-~~~~~~  232 (265)
                      ++|+++|+++|+||+|+.+.++         .....+.|++++|+||+++ ++   +|+++++++.+...... ......
T Consensus       218 ~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~g-~~---gG~v~~~~~l~~~l~~~~~~~~~~  293 (427)
T 2w8t_A          218 AVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVG-TV---GGFVVSNHPKFEAVRLACRPYIFT  293 (427)
T ss_dssp             HHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTC-SC---CEEEEECCTTGGGGGGTCHHHHSS
T ss_pred             HHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhhc-cC---CCEEEeCHHHHHHHHHhccccccc
Confidence            9999999999999999977654         1122357999999999994 55   48998877544332211 112233


Q ss_pred             CCCChhHHHHH
Q 024619          233 SGLAPFDCWIC  243 (265)
Q Consensus       233 ~~~~~~~~~~~  243 (265)
                      ...++.....+
T Consensus       294 ~~~~~~~~aa~  304 (427)
T 2w8t_A          294 ASLPPSVVATA  304 (427)
T ss_dssp             CCCCHHHHHHH
T ss_pred             CCCCHHHHHHH
Confidence            44555554443

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=99.95  E-value=2.3e-26  Score=201.11  Aligned_cols=195  Identities=22%  Similarity=0.307  Sum_probs=147.7

Q ss_pred             CccCCC-CCh-hHHHHHHHHHhHhCC----CceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCe
Q 024619           47 YDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV  119 (265)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~  119 (265)
                      ..|++. |.+ +++++++++.+.+|.    ++++++++|++++. ++..++++||+|+++.|+|+.+..    .++..|.
T Consensus        62 ~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~  137 (385)
T 1b5p_A           62 TKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPE----MVRFAGG  137 (385)
T ss_dssp             CSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHH----HHHHTTC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCchhHHH----HHHHcCC
Confidence            467665 665 589999999887774    24455555569986 677789999999999999998874    4456788


Q ss_pred             EEEeecCC-------CHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc----C
Q 024619          120 VVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----R  185 (265)
Q Consensus       120 ~~~~~~~~-------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~----~  185 (265)
                      +++.++.+       |++++++++.+++++|++++|+||||.+.+   +++|+++|+++|+++|+||+|+...+.    .
T Consensus       138 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~  217 (385)
T 1b5p_A          138 VVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFS  217 (385)
T ss_dssp             EEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCC
T ss_pred             EEEEeecCcccCCCCCHHHHHHhcCCCCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCC
Confidence            98888863       789999999888999999999999999965   899999999999999999999865442    1


Q ss_pred             CCCC--CccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhcc
Q 024619          186 PLEL--GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV  247 (265)
Q Consensus       186 ~~~~--~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  247 (265)
                      ....  +.+++++|+||++ |++|+|+|+++++++ +.+.+...+.......+...+..+.+.+
T Consensus       218 ~~~~~~~~~i~~~s~SK~~-~~~G~RiG~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~~l  279 (385)
T 1b5p_A          218 PGRVAPEHTLTVNGAAKAF-AMTGWRIGYACGPKE-VIKAMASVSRQSTTSPDTIAQWATLEAL  279 (385)
T ss_dssp             GGGTCTTTEEEEEESTTTT-TCGGGCCEEEECCHH-HHHHHHHHHHTTTCSCCHHHHHHHHHHH
T ss_pred             HHHcCCCCEEEEEechhhc-CCcccceEEEEeCHH-HHHHHHHHHhhccCCCCHHHHHHHHHHH
Confidence            1222  5789999999999 667899999998764 4444444444444455555544443333

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=99.94  E-value=2e-26  Score=202.07  Aligned_cols=202  Identities=14%  Similarity=0.169  Sum_probs=155.1

Q ss_pred             ceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CC-hhHHHHHHHHHhHhCCCceEEecchHHHHH-HH
Q 024619           10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GN-PTRDALESLLAKLDKADRALCFTSGMAALA-AV   86 (265)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~-~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~   86 (265)
                      +..+++|+ +++++|..++|.+.................|... |. +.++++++++++++|.++++++++|++|+. ++
T Consensus        42 g~~~idl~-~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~v~~~~ggt~a~~~~~  120 (398)
T 3a2b_A           42 GRRVLMFG-SNSYLGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVGKEAAILFSTGFQSNLGPL  120 (398)
T ss_dssp             TEEEEECS-CSCTTCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHH
T ss_pred             CceEEEee-cccccCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHH
Confidence            35689999 6666666455554443322111111122234443 55 569999999999999988888888889986 67


Q ss_pred             HHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCC----CceEEEEecCCCCccccccHHHHH
Q 024619           87 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP----WTKLVWVESPTNPRQQICDIRKIA  162 (265)
Q Consensus        87 ~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~----~~~~i~~~~~~np~G~~~~l~~i~  162 (265)
                      ..++++||.|++++|.|+.+..    .++..|.+++.++..|++++++.+.+    ++++|++++++||||.+.++++|.
T Consensus       121 ~~~~~~gd~V~~~~p~~~~~~~----~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~~~~l~  196 (398)
T 3a2b_A          121 SCLMGRNDYILLDERDHASIID----GSRLSFSKVIKYGHNNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVNLPELT  196 (398)
T ss_dssp             HHSSCTTCEEEEETTCCHHHHH----HHHHSSSEEEEECTTCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCCHHHHH
T ss_pred             HHHhCCCCEEEECCccCHHHHH----HHHHcCCceEEeCCCCHHHHHHHHHhhccCCceEEEEeCCCCCCCCccCHHHHH
Confidence            7788999999999999998874    34567899999999999999998865    789999999999999999999999


Q ss_pred             HHHHHcCCEEEEeCCcCCCCCc---CCC-C-----CCccEEEeccccccccCCCceeeEEEeechhH
Q 024619          163 EMAHAHGALLLVDNSIMSPVLS---RPL-E-----LGADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       163 ~~a~~~~~~li~D~~~~~~~~~---~~~-~-----~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                      ++|+++|+++|+||+|+.+.+.   ... .     .+.|++++|+||++ +++|   |+++++++.+
T Consensus       197 ~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~-~~~G---G~~~~~~~~~  259 (398)
T 3a2b_A          197 SIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSL-ASLG---GFVAGDADVI  259 (398)
T ss_dssp             HHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTT-CSSC---EEEEECHHHH
T ss_pred             HHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEecccccc-cCCC---cEEEeCHHHH
Confidence            9999999999999999877542   111 1     12589999999999 5665   8888876544

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=99.94  E-value=4.9e-26  Score=198.76  Aligned_cols=223  Identities=13%  Similarity=0.134  Sum_probs=159.7

Q ss_pred             ceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhC--C--CceEEecchHHHHH-
Q 024619           10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK--A--DRALCFTSGMAALA-   84 (265)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g--~--~~~i~~~~g~~al~-   84 (265)
                      +..+|+|+ ..+...+.++.+..+......    ...+.|++.....++++++++++.+|  .  +.++++++|++++. 
T Consensus        26 g~~~i~~~-~~~~~~~~~~~v~~a~~~~~~----~~~~~y~~~~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~  100 (391)
T 3dzz_A           26 KEKELPMW-IAEMDFKIAPEIMASMEEKLK----VAAFGYESVPAEYYKAVADWEEIEHRARPKEDWCVFASGVVPAISA  100 (391)
T ss_dssp             CTTCEECC-SSCCSSCCCHHHHHHHHHHHT----TCCCCCBCCCHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHH
T ss_pred             CCCceecc-ccCCCCCCCHHHHHHHHHHHh----cCcCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHH
Confidence            34789998 444433333333333321111    13456666533569999999999987  3  24555555579986 


Q ss_pred             HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC--------CCHHHHHhhcC-CCceEEEEecCCCCcccc
Q 024619           85 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT--------CDLDEVASAIG-PWTKLVWVESPTNPRQQI  155 (265)
Q Consensus        85 ~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~d~~~l~~~~~-~~~~~i~~~~~~np~G~~  155 (265)
                      ++..++++||+|+++.|+|+++..    .++..|.+++.++.        .|++++++++. +++++|++++|+||||.+
T Consensus       101 ~~~~l~~~gd~vl~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~  176 (391)
T 3dzz_A          101 MVRQFTSPGDQILVQEPVYNMFYS----VIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYA  176 (391)
T ss_dssp             HHHHHSCTTCEEEECSSCCHHHHH----HHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBC
T ss_pred             HHHHhCCCCCeEEECCCCcHHHHH----HHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCCCCCCcc
Confidence            777788999999999999998874    44567899999887        58999999997 789999999999999999


Q ss_pred             ---ccHHHHHHHHHHcCCEEEEeCCcCCCCCc-----CCCCCC---cc--EEEeccccccccCCCceeeEEEeechhHHH
Q 024619          156 ---CDIRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLELG---AD--IVMHSATKFIAGHSDVMAGVLAVKGERLAK  222 (265)
Q Consensus       156 ---~~l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~~~~~---~d--i~~~s~sK~~~g~~g~~~G~v~~~~~~~~~  222 (265)
                         .++++|+++|++||+++|+||+|+...+.     .....+   .|  +++.|+||++ |++|+++|+++++++.+.+
T Consensus       177 ~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~-g~~G~r~G~~~~~~~~~~~  255 (391)
T 3dzz_A          177 WSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTF-NLAALHAACAIIPNPDLRA  255 (391)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHH-TCTTTCCEEEECCSHHHHH
T ss_pred             cCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhc-cccchhheEEEECCHHHHH
Confidence               57899999999999999999999854432     111211   34  9999999999 6678899999988555555


Q ss_pred             HHHHHHH-hccCCCChhHHHH
Q 024619          223 ELYFLQN-AEGSGLAPFDCWI  242 (265)
Q Consensus       223 ~~~~~~~-~~~~~~~~~~~~~  242 (265)
                      .+..... ......++.....
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~a  276 (391)
T 3dzz_A          256 RAEESFFLAGIGEPNLLAIPA  276 (391)
T ss_dssp             HHHHHHHHHTCSSCCTTHHHH
T ss_pred             HHHHHHHhhccCCCCHHHHHH
Confidence            5544433 2333445444333

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=99.94  E-value=1.3e-26  Score=204.11  Aligned_cols=204  Identities=16%  Similarity=0.072  Sum_probs=159.3

Q ss_pred             cceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CC-hhHHHHHHHHHhHhCCCceEEecchHHHHH-H
Q 024619            9 VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GN-PTRDALESLLAKLDKADRALCFTSGMAALA-A   85 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~-~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~   85 (265)
                      .+.++++|+ +|+|+|..++|.+.................|... |. +..+++++++++++|.+..+++++|++++. +
T Consensus        57 ~g~~~ld~~-s~~~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~~  135 (409)
T 3kki_A           57 ASPDDIILQ-SNDYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGFDECLLSQSGWNANVGL  135 (409)
T ss_dssp             CCTTSEECC-CSCTTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHTCSEEEEESCHHHHHHHH
T ss_pred             CCCceEEee-ccCccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhCCCeEEEecchHHHHHHH
Confidence            346799999 8999998777766554322211111112222222 44 457889999999999998999999998875 7


Q ss_pred             HHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCC-CceEEEEecCCCCccccccHHHHHHH
Q 024619           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEM  164 (265)
Q Consensus        86 ~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~-~~~~i~~~~~~np~G~~~~l~~i~~~  164 (265)
                      +..++++||.|++++|.|+++...    ++..|.+++.++..|++++++++.+ ++++|++++++||||.+.++++|.++
T Consensus       136 l~~~~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~~~~~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~l~~l~~l  211 (409)
T 3kki_A          136 LQTICQPNTNVYIDFFAHMSLWEG----ARYANAQAHPFMHNNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAELVNI  211 (409)
T ss_dssp             HHHHCCTTCEEEEETTSCHHHHHH----HHHTTCEEEEECTTCHHHHHHHHHHHCSCEEEEESBCTTTCCBCCHHHHHHH
T ss_pred             HHHhcCCCCEEEECCCcCHHHHHH----HHHcCCeEEEecCCCHHHHHHHHHhcCCeEEEECCCCCCCCCcCCHHHHHHH
Confidence            788899999999999999988743    3556889999998999999999874 58999999999999999999999999


Q ss_pred             HHHcCCEEEEeCCcCCCCCcC---------CCCCCccEEEeccccccccCCCceeeEEEeechhHH
Q 024619          165 AHAHGALLLVDNSIMSPVLSR---------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA  221 (265)
Q Consensus       165 a~~~~~~li~D~~~~~~~~~~---------~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~  221 (265)
                      |++||+++|+||+|+.+.++.         ....+.|+++.|+||++++ +   +|+++.+++.+.
T Consensus       212 a~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~~~-~---gg~v~~~~~~~~  273 (409)
T 3kki_A          212 SKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAY-R---AGAIWCNNEVNR  273 (409)
T ss_dssp             HHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCS-S---CEEEEESSSGGG
T ss_pred             HHHcCCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhhCC-C---ceEEEECHHHHH
Confidence            999999999999998765531         1123578999999999954 3   488888776543

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=99.94  E-value=1.4e-25  Score=194.89  Aligned_cols=225  Identities=17%  Similarity=0.247  Sum_probs=164.4

Q ss_pred             eeEeeccCCCCC-CCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCC----CceEEecchHHHH
Q 024619           11 TLLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGMAAL   83 (265)
Q Consensus        11 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~g~~al   83 (265)
                      ..+++|+ .+.+ ++.  +|.+........   ......|+.. |.+ +++++++++.+.+|.    ++++++++|++++
T Consensus        29 ~~~i~l~-~~~~~~~~--~~~v~~a~~~~~---~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~  102 (370)
T 2z61_A           29 KKVIHLE-IGEPDFNT--PKPIVDEGIKSL---KEGKTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGL  102 (370)
T ss_dssp             CCCEECC-CCSCSSCC--CHHHHHHHHHHH---HTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHH
T ss_pred             CCEEEcc-CCCCCCCC--CHHHHHHHHHHH---HcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHH
Confidence            4578998 4443 332  333332221111   1123467665 564 588888888776552    3566666677998


Q ss_pred             H-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHH
Q 024619           84 A-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIA  162 (265)
Q Consensus        84 ~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~  162 (265)
                      . ++..++++||+|++++|+|+++...    ++..|.+++.++ .|++++++++.+++++|++++|+||||.+.+++ |.
T Consensus       103 ~~~~~~~~~~gd~vl~~~p~~~~~~~~----~~~~g~~~~~v~-~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~-l~  176 (370)
T 2z61_A          103 FFALSSIIDDGDEVLIQNPCYPCYKNF----IRFLGAKPVFCD-FTVESLEEALSDKTKAIIINSPSNPLGEVIDRE-IY  176 (370)
T ss_dssp             HHHHHHHCCTTCEEEEESSCCTHHHHH----HHHTTCEEEEEC-SSHHHHHHHCCSSEEEEEEESSCTTTCCCCCHH-HH
T ss_pred             HHHHHHhcCCCCEEEEeCCCchhHHHH----HHHcCCEEEEeC-CCHHHHHHhcccCceEEEEcCCCCCcCcccCHH-HH
Confidence            6 6677889999999999999998744    456788999998 789999999988899999999999999999999 99


Q ss_pred             HHHHHcCCEEEEeCCcCCCCCc----CCC----CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCC
Q 024619          163 EMAHAHGALLLVDNSIMSPVLS----RPL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG  234 (265)
Q Consensus       163 ~~a~~~~~~li~D~~~~~~~~~----~~~----~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~  234 (265)
                      ++|+++|+++|+||+|+.+.+.    ...    ..+.|+++.|+||++ |++|+++|+++++++ +.+.+..........
T Consensus       177 ~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~-~~~~~~~~~~~~~~~  254 (370)
T 2z61_A          177 EFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLY-AMTGWRIGYVISNDE-IIEAILKLQQNLFIS  254 (370)
T ss_dssp             HHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTT-TCGGGCCEEEECCHH-HHHHHHHHHHHHTSS
T ss_pred             HHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhcc-CCccceEEEEEECHH-HHHHHHHHHhhcccC
Confidence            9999999999999999865542    112    236799999999999 677899999998874 445455554444556


Q ss_pred             CChhHHHHHHhccCc
Q 024619          235 LAPFDCWICLRGVKT  249 (265)
Q Consensus       235 ~~~~~~~~~~~~l~~  249 (265)
                      .++..+..+.+.++.
T Consensus       255 ~~~~~~~a~~~~l~~  269 (370)
T 2z61_A          255 APTISQYAALKAFEK  269 (370)
T ss_dssp             SCHHHHHHHGGGGSH
T ss_pred             CCHHHHHHHHHHHhc
Confidence            666666666666654

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=99.94  E-value=1.2e-25  Score=196.25  Aligned_cols=228  Identities=18%  Similarity=0.170  Sum_probs=162.4

Q ss_pred             ceeEeeccCCCCCCCCCCCCeeeccccccCCCCCC--CCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-HH
Q 024619           10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSATEN--GPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AV   86 (265)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~   86 (265)
                      +..+++|+ ++.++|..++|.+.............  ....|.....+...++++.+++++|.++.+++++|++++. ++
T Consensus        38 g~~~id~~-~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~~~  116 (384)
T 1bs0_A           38 DRQYLNFS-SNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSRALLFISGFAANQAVI  116 (384)
T ss_dssp             TEEEEECS-CCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHH
T ss_pred             CceEEEee-ccCccCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHH
Confidence            45789999 66666754555444432211110010  1111221122568999999999999988999999998885 67


Q ss_pred             HHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCC---CceEEEEecCCCCccccccHHHHHH
Q 024619           87 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP---WTKLVWVESPTNPRQQICDIRKIAE  163 (265)
Q Consensus        87 ~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~---~~~~i~~~~~~np~G~~~~l~~i~~  163 (265)
                      ..++++||.|+++.|.|+.+..    .++..|.+++.++..|++++++.+.+   ++++|++++++||||.+.|+++|.+
T Consensus       117 ~~~~~~gd~v~~~~~~~~~~~~----~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~~~nptG~~~~l~~i~~  192 (384)
T 1bs0_A          117 AAMMAKEDRIAADRLSHASLLE----AASLSPSQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQ  192 (384)
T ss_dssp             HHHCCTTCEEEEETTCCHHHHH----HHHTSSSEEEEECTTCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCCHHHHHH
T ss_pred             HHhCCCCcEEEEcccccHHHHH----HHHHcCCCEEEeCCCCHHHHHHHHHhcCCCCeEEEEeCCCCCCCCccCHHHHHH
Confidence            7788999999999999988864    44567999999999999999988864   3789999999999999999999999


Q ss_pred             HHHHcCCEEEEeCCcCCCCCc---C----CCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHH--HHhccCC
Q 024619          164 MAHAHGALLLVDNSIMSPVLS---R----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL--QNAEGSG  234 (265)
Q Consensus       164 ~a~~~~~~li~D~~~~~~~~~---~----~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~--~~~~~~~  234 (265)
                      +|+++|+++|+||+|+.+.+.   .    ....+.|++++|+||++ +++|   |+++++++.+ +.+...  .......
T Consensus       193 l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~-~~~G---G~~~~~~~~~-~~l~~~~~~~~~~~~  267 (384)
T 1bs0_A          193 VTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGF-GVSG---AAVLCSSTVA-DYLLQFARHLIYSTS  267 (384)
T ss_dssp             HHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTT-SSCC---EEEEECHHHH-HHHHHHCHHHHSSBC
T ss_pred             HHHHcCcEEEEECCcccceecCCCCchHHhcCCCCcEEEeeccchh-hccC---cEEEeCHHHH-HHHHHhchhhhcCCC
Confidence            999999999999999877542   1    12235789999999999 4654   8888876544 333322  1222234


Q ss_pred             CChhHHHHHHhcc
Q 024619          235 LAPFDCWICLRGV  247 (265)
Q Consensus       235 ~~~~~~~~~~~~l  247 (265)
                      .++..++.+...+
T Consensus       268 ~~~~~~~~~~~al  280 (384)
T 1bs0_A          268 MPPAQAQALRASL  280 (384)
T ss_dssp             CCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            5555554444333

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=99.94  E-value=7.6e-26  Score=197.56  Aligned_cols=221  Identities=13%  Similarity=0.138  Sum_probs=159.0

Q ss_pred             eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhC--CC--ceEEecchHHHHH-H
Q 024619           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK--AD--RALCFTSGMAALA-A   85 (265)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g--~~--~~i~~~~g~~al~-~   85 (265)
                      ..+++|+ .++...+.++.+..+......    ...+.|++...+.++++++++++++|  .+  .++++++|++++. +
T Consensus        32 ~~~i~l~-~~~~~~~~~~~v~~a~~~~~~----~~~~~y~~~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~  106 (391)
T 4dq6_A           32 NDLLPMW-VADMDFKAAPCIIDSLKNRLE----QEIYGYTTRPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLL  106 (391)
T ss_dssp             SCSEECC-SSSCSSCCCHHHHHHHHHHHT----TCCCCCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHH
T ss_pred             CCceecc-ccCCCCCCCHHHHHHHHHHHh----CCCCCCCCCCHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHH
Confidence            3568998 555433333333333221111    13455665433569999999999988  33  4666666679986 6


Q ss_pred             HHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC---------CHHHHHhhcCCCceEEEEecCCCCcccc-
Q 024619           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---------DLDEVASAIGPWTKLVWVESPTNPRQQI-  155 (265)
Q Consensus        86 ~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------d~~~l~~~~~~~~~~i~~~~~~np~G~~-  155 (265)
                      +..++++||+|+++.|+|+++..    .++..|.+++.++.+         |++++++++.+ +++|++++|+||||.+ 
T Consensus       107 ~~~~~~~gd~vl~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~v~i~~p~nptG~~~  181 (391)
T 4dq6_A          107 INELTKANDKIMIQEPVYSPFNS----VVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD-VKLFILCNPHNPVGRVW  181 (391)
T ss_dssp             HHHHSCTTCEEEECSSCCTHHHH----HHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT-EEEEEEESSBTTTTBCC
T ss_pred             HHHhCCCCCEEEEcCCCCHHHHH----HHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc-CCEEEEECCCCCCCcCc
Confidence            77788999999999999999874    445678999988865         89999999988 9999999999999999 


Q ss_pred             --ccHHHHHHHHHHcCCEEEEeCCcCCCCCc-----CCCCC-----CccEEEeccccccccCCCceeeEEEeechhHHHH
Q 024619          156 --CDIRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLEL-----GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE  223 (265)
Q Consensus       156 --~~l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~~~~-----~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~  223 (265)
                        .++++|+++|+++|+++|+||+|+...+.     .....     +.++++.|+||++ |.+|+++|+++.+++.+.+.
T Consensus       182 ~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~~~~~~  260 (391)
T 4dq6_A          182 TKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTF-NIAGLQSSYVVLPDEKDYKL  260 (391)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHH-TCGGGCCEEEECCSHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhc-cCcccceEEEEeCCHHHHHH
Confidence              56899999999999999999999864432     11122     3449999999999 66789999999887555555


Q ss_pred             HHHHHHhc-cCCCChhHHHH
Q 024619          224 LYFLQNAE-GSGLAPFDCWI  242 (265)
Q Consensus       224 ~~~~~~~~-~~~~~~~~~~~  242 (265)
                      +....... ....++..+..
T Consensus       261 ~~~~~~~~~~~~~~~~~~~a  280 (391)
T 4dq6_A          261 LDDAFTRIDIKRNNCFSLVA  280 (391)
T ss_dssp             HHHHHHHTTCCCCCHHHHHH
T ss_pred             HHHHHHhhcCCCCCHHHHHH
Confidence            55443333 33455544443

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=99.94  E-value=7.3e-26  Score=198.63  Aligned_cols=231  Identities=17%  Similarity=0.167  Sum_probs=164.8

Q ss_pred             cceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCC--CCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-H
Q 024619            9 VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENG--PYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-A   85 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~   85 (265)
                      .+..+++|+ +++++|..++|.+..+...........  ...|.....+...++++.+++++|.++.+++++|++++. +
T Consensus        43 ~g~~~id~~-~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~  121 (401)
T 1fc4_A           43 DGSHVINFC-ANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGMEDAILYSSCFDANGGL  121 (401)
T ss_dssp             TSCEEEECC-CSCTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTT
T ss_pred             CCccEEEee-ccCcccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHhCCCcEEEeCChHHHHHHH
Confidence            346799999 667788644554444321111100110  111211113568999999999999988899999998875 6


Q ss_pred             HHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCC------CceEEEEecCCCCccccccHH
Q 024619           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP------WTKLVWVESPTNPRQQICDIR  159 (265)
Q Consensus        86 ~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~------~~~~i~~~~~~np~G~~~~l~  159 (265)
                      +..++++||.|+++.|.|+++.    ..++..|.+++.++..|++++++.+.+      ++++|++++|+||||.+.+++
T Consensus       122 ~~~~~~~gd~v~~~~~~~~~~~----~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~~~  197 (401)
T 1fc4_A          122 FETLLGAEDAIISDALNHASII----DGVRLCKAKRYRYANNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLK  197 (401)
T ss_dssp             HHHHCCTTCEEEEETTCCHHHH----HHHHTSCSEEEEECTTCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHH
T ss_pred             HHHHcCCCCEEEEcchhHHHHH----HHHHHcCCceEEECCCCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCCHH
Confidence            7778999999999999998775    345678999999998899999988864      789999999999999999999


Q ss_pred             HHHHHHHHcCCEEEEeCCcCCCCCc---------CCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHH--
Q 024619          160 KIAEMAHAHGALLLVDNSIMSPVLS---------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ--  228 (265)
Q Consensus       160 ~i~~~a~~~~~~li~D~~~~~~~~~---------~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~--  228 (265)
                      +|.++|+++|+++|+||+|+.+...         .....+.|++++|+||+++++.   +|+++++++.+ +.+....  
T Consensus       198 ~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~di~~~s~sK~~~~~~---gG~~~~~~~~~-~~l~~~~~~  273 (401)
T 1fc4_A          198 GVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGAS---GGYTAARKEVV-EWLRQRSRP  273 (401)
T ss_dssp             HHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSS---CEEEEECHHHH-HHHHHHCHH
T ss_pred             HHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCcCCcEEEecchhhccCCC---CEEEEcCHHHH-HHHHHhCcC
Confidence            9999999999999999999755542         1122357999999999995554   48888876443 4333322  


Q ss_pred             HhccCCCChhHHHHHHhccC
Q 024619          229 NAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~l~  248 (265)
                      .......++..++.+...++
T Consensus       274 ~~~~~~~~~~~~~a~~~~l~  293 (401)
T 1fc4_A          274 YLFSNSLAPAIVAASIKVLE  293 (401)
T ss_dssp             HHHSCCCCHHHHHHHHHHHH
T ss_pred             ceeCCCCCHHHHHHHHHHHH
Confidence            22244556655555444443

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.94  E-value=5e-25  Score=192.83  Aligned_cols=226  Identities=19%  Similarity=0.243  Sum_probs=161.0

Q ss_pred             eeEeeccCCCCC-CCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCC----CceEEecchHHHH
Q 024619           11 TLLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGMAAL   83 (265)
Q Consensus        11 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~g~~al   83 (265)
                      ..+++|+ .+.+ ++  .+|.+........   ......|+.. |.+ +++++++++.+.+|.    +.++++++|++++
T Consensus        41 ~~~i~l~-~~~~~~~--~~~~v~~a~~~~~---~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al  114 (389)
T 1o4s_A           41 EDVINLT-AGEPDFP--TPEPVVEEAVRFL---QKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQAL  114 (389)
T ss_dssp             CCCEECC-CSSCSSC--CCHHHHHHHHHHH---TTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHH
T ss_pred             CCEEEcc-CCCCCCC--CCHHHHHHHHHHH---hcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHH
Confidence            3578998 4443 33  2333333211111   1123467665 564 588888888877774    2455555566898


Q ss_pred             H-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-------CHHHHHhhcCCCceEEEEecCCCCcccc
Q 024619           84 A-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQI  155 (265)
Q Consensus        84 ~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~~~~~~~~i~~~~~~np~G~~  155 (265)
                      . ++..++++||+|++++|+|+++...    ++..|.+++.++.+       |++++++++.+++++|++++|+||||.+
T Consensus       115 ~~~~~~l~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~  190 (389)
T 1o4s_A          115 FNAFMALLDPGDEVIVFSPVWVSYIPQ----IILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVV  190 (389)
T ss_dssp             HHHHHHHCCTTCEEEEEESCCTTHHHH----HHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEESSCTTTCCC
T ss_pred             HHHHHHhCCCCCEEEEcCCCchhHHHH----HHHcCCEEEEEecCCccCCCCCHHHHHHhcccCceEEEEcCCCCCCCCC
Confidence            6 6677789999999999999998743    45578888888753       7899999998889999999999999999


Q ss_pred             cc---HHHHHHHHHHcCCEEEEeCCcCCCCCc----CCCC----CCccEEEeccccccccCCCceeeEEEeechhHHHHH
Q 024619          156 CD---IRKIAEMAHAHGALLLVDNSIMSPVLS----RPLE----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL  224 (265)
Q Consensus       156 ~~---l~~i~~~a~~~~~~li~D~~~~~~~~~----~~~~----~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~  224 (265)
                      .+   +++|+++|+++|+++|+||+|+.+.+.    ....    .+.|+++.|+||++ |++|+++|+++++++ +.+.+
T Consensus       191 ~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~l~~~~~-~~~~l  268 (389)
T 1o4s_A          191 YRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSH-SMTGWRVGYLISSEK-VATAV  268 (389)
T ss_dssp             CCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTT-TCGGGCCEEEECCHH-HHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhc-CCcccceEEEEeCHH-HHHHH
Confidence            76   899999999999999999999866542    1111    46799999999999 677899999998765 44444


Q ss_pred             HHHHHhccCCCChhHHHHHHhccC
Q 024619          225 YFLQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      ...........++..+..+.+.++
T Consensus       269 ~~~~~~~~~~~~~~~~~a~~~~l~  292 (389)
T 1o4s_A          269 SKIQSHTTSCINTVAQYAALKALE  292 (389)
T ss_dssp             HHHHHHHTCSCCHHHHHHHHHHTT
T ss_pred             HHHhhhcccCCCHHHHHHHHHHHh
Confidence            444444445556655555555444

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=99.93  E-value=3.3e-25  Score=193.62  Aligned_cols=221  Identities=20%  Similarity=0.251  Sum_probs=158.1

Q ss_pred             eeEeeccCCCCC-CCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCC----CceEEecchHHHH
Q 024619           11 TLLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGMAAL   83 (265)
Q Consensus        11 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~g~~al   83 (265)
                      ..+++|+ .+++ ++  ++|.+........   ......|+.. |.+ +++++++++.+.+|.    +.++++++|++++
T Consensus        30 ~~~i~l~-~~~~~~~--~~~~v~~a~~~~~---~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~  103 (388)
T 1j32_A           30 IDVCSFS-AGEPDFN--TPKHIVEAAKAAL---EQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSI  103 (388)
T ss_dssp             CCCEECC-CSSCSSC--CCHHHHHHHHHHH---HTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHH
T ss_pred             CCEEECC-CCCCCCC--CCHHHHHHHHHHH---hcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHH
Confidence            4588998 4444 33  2333332211111   1123467766 665 588899998888774    2345555556998


Q ss_pred             H-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-------CHHHHHhhcCCCceEEEEecCCCCcccc
Q 024619           84 A-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQI  155 (265)
Q Consensus        84 ~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~~~~~~~~i~~~~~~np~G~~  155 (265)
                      . ++..++++||+|++++|+|+++..    .++..|.+++.++.+       |++++++++.+++++|++++|+||||.+
T Consensus       104 ~~~~~~~~~~gd~vl~~~~~~~~~~~----~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~  179 (388)
T 1j32_A          104 FNLMLAMIEPGDEVIIPAPFWVSYPE----MVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMV  179 (388)
T ss_dssp             HHHHHHHCCTTCEEEEESSCCTHHHH----HHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCC
T ss_pred             HHHHHHhcCCCCEEEEcCCCChhHHH----HHHHcCCEEEEecCCcccCCCCCHHHHHHhcCcCceEEEEeCCCCCCCcC
Confidence            6 667778999999999999999874    345678888888753       7899999998889999999999999999


Q ss_pred             cc---HHHHHHHHHHcCCEEEEeCCcCCCCCc-----CCCC-----CCccEEEeccccccccCCCceeeEEEeechhHHH
Q 024619          156 CD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLE-----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK  222 (265)
Q Consensus       156 ~~---l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~~~-----~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~  222 (265)
                      .+   +++|+++|+++|+++|+||+|+...+.     ....     .+.|+++.|+||++ +++|+++|+++++++ +.+
T Consensus       180 ~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~-~~~G~r~G~~~~~~~-~~~  257 (388)
T 1j32_A          180 YTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTY-AMTGWRVGFLAGPVP-LVK  257 (388)
T ss_dssp             CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTT-TCTTTCCEEEECCHH-HHH
T ss_pred             CCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhcc-CCcccceEEEEeCHH-HHH
Confidence            54   899999999999999999999865442     1111     34789999999999 677899999998765 444


Q ss_pred             HHHHHHHhccCCCChhHHHHH
Q 024619          223 ELYFLQNAEGSGLAPFDCWIC  243 (265)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~  243 (265)
                      .+...........++..++.+
T Consensus       258 ~l~~~~~~~~~~~~~~~~~a~  278 (388)
T 1j32_A          258 AATKIQGHSTSNVCTFAQYGA  278 (388)
T ss_dssp             HHHHHHHTTTCSCCHHHHHHH
T ss_pred             HHHHHHhhcccCCCHHHHHHH
Confidence            444444444455565554443

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=99.93  E-value=5.3e-25  Score=192.40  Aligned_cols=197  Identities=17%  Similarity=0.228  Sum_probs=148.5

Q ss_pred             CccCCC-CCh-hHHHHHHHHHhHhCC----Cc-eEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC
Q 024619           47 YDYTRS-GNP-TRDALESLLAKLDKA----DR-ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (265)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~~l~~~~g~----~~-~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g  118 (265)
                      ..|+.. |.+ +++++++++.+.+|.    ++ ++++++|++++. ++..++++||+|++++|+|+++...    ++..|
T Consensus        57 ~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~----~~~~g  132 (389)
T 1gd9_A           57 THYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPA----VILAG  132 (389)
T ss_dssp             CSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHH----HHHHT
T ss_pred             CCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHH----HHHCC
Confidence            457665 665 588888888887773    35 666666679986 6666789999999999999998744    35568


Q ss_pred             eEEEeecCC-------CHHHHHhhcCCCceEEEEecCCCCccccc---cHHHHHHHHHHcCCEEEEeCCcCCCCCc----
Q 024619          119 VVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQIC---DIRKIAEMAHAHGALLLVDNSIMSPVLS----  184 (265)
Q Consensus       119 ~~~~~~~~~-------d~~~l~~~~~~~~~~i~~~~~~np~G~~~---~l~~i~~~a~~~~~~li~D~~~~~~~~~----  184 (265)
                      .+++.++.+       |++++++++.+++++|++++|+||||.+.   ++++|+++|++||+++|+||+|+.+.+.    
T Consensus       133 ~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~  212 (389)
T 1gd9_A          133 GKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARH  212 (389)
T ss_dssp             CEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCC
T ss_pred             CEEEEeccCCccCCCCCHHHHHHhcCcCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCC
Confidence            888887743       78999999988899999999999999997   4899999999999999999999876542    


Q ss_pred             -CCCC----CCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccCc
Q 024619          185 -RPLE----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT  249 (265)
Q Consensus       185 -~~~~----~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  249 (265)
                       ....    .+.|+++.|+||++ +++|+|+|+++++++ +.+.+...........++..+..+...++.
T Consensus       213 ~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~  280 (389)
T 1gd9_A          213 YSIASLDGMFERTITVNGFSKTF-AMTGWRLGFVAAPSW-IIERMVKFQMYNATCPVTFIQYAAAKALKD  280 (389)
T ss_dssp             CCGGGSTTCGGGEEEEEESTTTT-TCGGGCCEEEECCHH-HHHHHHHHHTTTTCSCCHHHHHHHHHHHTC
T ss_pred             CCHhhccCCCCCEEEEecChhhc-CCcccceEEEEECHH-HHHHHHHHHhhhccCCCHHHHHHHHHHHhC
Confidence             1112    35789999999999 677899999998764 444444444433445555555554444543

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=99.93  E-value=5.1e-25  Score=192.84  Aligned_cols=228  Identities=19%  Similarity=0.203  Sum_probs=162.1

Q ss_pred             CcceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCC-----C-ceEEecch
Q 024619            8 GVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKA-----D-RALCFTSG   79 (265)
Q Consensus         8 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~-----~-~~i~~~~g   79 (265)
                      ..+..+|+|+ +++..-. .+|.+..+......    ....|++. |.+ +++++++++.+.+|.     + .++++++|
T Consensus        27 ~~g~~~i~l~-~~~~~~~-~~~~v~~a~~~~~~----~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~  100 (396)
T 3jtx_A           27 PEGMEAVPLH-IGEPKHP-TPKVITDALTASLH----ELEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGS  100 (396)
T ss_dssp             CTTCCCEECS-CCSCCSC-CCHHHHHHHHHTGG----GGGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSH
T ss_pred             ccCCCeEEeC-CcCCCCC-CCHHHHHHHHHHhh----hccCCCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCc
Confidence            3456799999 5543222 33433332211111    34567766 665 599999999988773     3 45555555


Q ss_pred             HHHHH-HHHHhcCCC-----CEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC------CHHHHHhhcCCCceEEEEec
Q 024619           80 MAALA-AVTHLLGTG-----EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVES  147 (265)
Q Consensus        80 ~~al~-~~~~~~~~g-----~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~~~~~~~~i~~~~  147 (265)
                      ++++. ++..++++|     |+|+++.|+|+++.    ..++..|.+++.++.+      |++++++++.+++++|++++
T Consensus       101 ~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~----~~~~~~g~~~~~v~~~~~g~~~d~~~l~~~~~~~~~~v~l~~  176 (396)
T 3jtx_A          101 REALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYE----GATLLGGGEIHFANCPAPSFNPDWRSISEEVWKRTKLVFVCS  176 (396)
T ss_dssp             HHHHHHHHHHHCCC---CCCCEEEEEESCCHHHH----HHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHHTEEEEEEES
T ss_pred             HHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHH----HHHHHcCCEEEEeecCCCCCccCHHHHHHhhccCcEEEEEEC
Confidence            68986 677788886     79999999999886    3446678899888753      77888888878899999999


Q ss_pred             CCCCccccccH---HHHHHHHHHcCCEEEEeCCcCCCCCcC--CC-----------CCCccEEEeccccccccCCCceee
Q 024619          148 PTNPRQQICDI---RKIAEMAHAHGALLLVDNSIMSPVLSR--PL-----------ELGADIVMHSATKFIAGHSDVMAG  211 (265)
Q Consensus       148 ~~np~G~~~~l---~~i~~~a~~~~~~li~D~~~~~~~~~~--~~-----------~~~~di~~~s~sK~~~g~~g~~~G  211 (265)
                      |+||||.+.+.   ++|+++|++||+++|+||+|+......  +.           ..+.++++.|+||.+ +.+|+++|
T Consensus       177 p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G  255 (396)
T 3jtx_A          177 PNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRS-NVPGLRSG  255 (396)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTS-SCGGGCCE
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEecccccc-CCcccceE
Confidence            99999999764   559999999999999999998644321  11           256789999999988 56789999


Q ss_pred             EEEeechhHHHHHHHHHHhccCCCChhHHHHHHhcc
Q 024619          212 VLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV  247 (265)
Q Consensus       212 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  247 (265)
                      +++.+++ +.+.+...........++..+..+...+
T Consensus       256 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~l  290 (396)
T 3jtx_A          256 FVAGDAE-LLKNFLLYRTYHGSAMSIPVQRASIAAW  290 (396)
T ss_dssp             EEEECHH-HHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred             EEEeCHH-HHHHHHHHHhhcccCCCHHHHHHHHHHh
Confidence            9987654 4454555555555566666555544433

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=99.93  E-value=4.6e-25  Score=196.68  Aligned_cols=228  Identities=16%  Similarity=0.178  Sum_probs=159.4

Q ss_pred             ceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCCC----ceEEecchHHHH
Q 024619           10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKAD----RALCFTSGMAAL   83 (265)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~~----~~i~~~~g~~al   83 (265)
                      +..+|+|+.+...++  ++|.+........  .......|++. |.+ +++++.+++.+.+|.+    +++++++|++|+
T Consensus        56 ~~~~i~l~~g~~~~~--~~~~v~~a~~~~~--~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al  131 (447)
T 3b46_A           56 GRELINLGQGFFSYS--PPQFAIKEAQKAL--DIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGI  131 (447)
T ss_dssp             TSCCEECCCCSCSSC--CCHHHHHHHHHHT--TSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHH
T ss_pred             CCCeEEccCCCCCCC--CCHHHHHHHHHHH--hCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHH
Confidence            346899983322233  3343333221111  11124568776 775 5889999998887743    345555556998


Q ss_pred             H-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC-----------------CCHHHHHhhcCCCceEEEE
Q 024619           84 A-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----------------CDLDEVASAIGPWTKLVWV  145 (265)
Q Consensus        84 ~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----------------~d~~~l~~~~~~~~~~i~~  145 (265)
                      . ++..++++||+|++++|+|+.+...    ++..|.+++.++.                 .|++++++++.+++++|++
T Consensus       132 ~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~l  207 (447)
T 3b46_A          132 LSCLMGLLNAGDEVIVFEPFFDQYIPN----IELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITSKTKAVII  207 (447)
T ss_dssp             HHHHHHHCCTTCEEEEEESCCTTHHHH----HHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCTTEEEEEE
T ss_pred             HHHHHHHcCCCCEEEEeCCCchhHHHH----HHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhhccCCeEEEE
Confidence            6 7777899999999999999999743    4556778777653                 3789999999888999999


Q ss_pred             ecCCCCccccc---cHHHHHHHHHHcCCEEEEeCCcCCCCCc----CCC-----CCCccEEEeccccccccCCCceeeEE
Q 024619          146 ESPTNPRQQIC---DIRKIAEMAHAHGALLLVDNSIMSPVLS----RPL-----ELGADIVMHSATKFIAGHSDVMAGVL  213 (265)
Q Consensus       146 ~~~~np~G~~~---~l~~i~~~a~~~~~~li~D~~~~~~~~~----~~~-----~~~~di~~~s~sK~~~g~~g~~~G~v  213 (265)
                      ++|+||||.+.   ++++|+++|++||+++|+||+|+...+.    ...     ..+.|+++.|+||++ +.+|+|+|++
T Consensus       208 ~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~-~~~G~riG~~  286 (447)
T 3b46_A          208 NTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSF-AATGWRIGWV  286 (447)
T ss_dssp             ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHT-TCTTSCCEEE
T ss_pred             eCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhc-CCcchhhEEE
Confidence            99999999995   5899999999999999999999864432    111     236899999999999 6678999999


Q ss_pred             Ee-echhHHHHHHHHHHhccCCCChhHHHHHHhcc
Q 024619          214 AV-KGERLAKELYFLQNAEGSGLAPFDCWICLRGV  247 (265)
Q Consensus       214 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  247 (265)
                      ++ +++ +.+.+...........++..+..+...|
T Consensus       287 ~~~~~~-l~~~l~~~~~~~~~~~~~~~~~a~~~aL  320 (447)
T 3b46_A          287 LSLNAE-LLSYAAKAHTRICFASPSPLQEACANSI  320 (447)
T ss_dssp             ECSCHH-HHHHHHHHHHHHTSSCCHHHHHHHHHHH
T ss_pred             EeCCHH-HHHHHHHHHhhccCCCChHHHHHHHHHH
Confidence            98 554 4444444444444445554444433333

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=99.93  E-value=5.9e-25  Score=192.66  Aligned_cols=202  Identities=17%  Similarity=0.220  Sum_probs=149.6

Q ss_pred             eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCC-CCccCCC-CCh-hHHHHHHHHHhHhCC--C--ceEEecchHHHH
Q 024619           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENG-PYDYTRS-GNP-TRDALESLLAKLDKA--D--RALCFTSGMAAL   83 (265)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~y~~~-g~~-~~~~l~~~l~~~~g~--~--~~i~~~~g~~al   83 (265)
                      ..+++|+ +++.... ++|.+.............. .+.|++. |.+ +++++++++.+.+|.  +  .++++++|++++
T Consensus        35 ~~~i~l~-~~~~~~~-~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al  112 (398)
T 3ele_A           35 ENVYDFS-IGNPSIP-APQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAASL  112 (398)
T ss_dssp             GGCEECC-SCCCCSC-CCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHH
T ss_pred             CCeEEee-cCCCCCC-CCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHHH
Confidence            4589999 5543332 3444433321111100000 3567665 665 599999999988873  2  455555556998


Q ss_pred             H-HHHHhcCCC-CEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC------CHHHHHhhcCCCceEEEEecCCCCcccc
Q 024619           84 A-AVTHLLGTG-EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQI  155 (265)
Q Consensus        84 ~-~~~~~~~~g-~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~~~~~~~~i~~~~~~np~G~~  155 (265)
                      . ++..++++| |+|+++.|+|+++..    .++..|.+++.++.+      |++++++++.+++++|++++|+||||.+
T Consensus       113 ~~~~~~l~~~g~d~vl~~~p~~~~~~~----~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~  188 (398)
T 3ele_A          113 SICFRALTSDAYDEFITIAPYFPEYKV----FVNAAGARLVEVPADTEHFQIDFDALEERINAHTRGVIINSPNNPSGTV  188 (398)
T ss_dssp             HHHHHHHCCSTTCEEEEESSCCTHHHH----HHHHTTCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEEECSSCTTTCCC
T ss_pred             HHHHHHHcCCCCCEEEEeCCCchhhHH----HHHHcCCEEEEEecCCcCCcCCHHHHHHHhCcCCCEEEEcCCCCCCCCC
Confidence            6 677789999 999999999999874    445678999998865      8999999999899999999999999999


Q ss_pred             cc---HHHHHHHHHH------cCCEEEEeCCcCCCCCc-----CC-CCCCccEEEeccccccccCCCceeeEEEeechh
Q 024619          156 CD---IRKIAEMAHA------HGALLLVDNSIMSPVLS-----RP-LELGADIVMHSATKFIAGHSDVMAGVLAVKGER  219 (265)
Q Consensus       156 ~~---l~~i~~~a~~------~~~~li~D~~~~~~~~~-----~~-~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~  219 (265)
                      .+   +++|+++|++      +|+++|+||+|+...+.     .. ...+.++++.|+||++ |.+|+|.|+++++++.
T Consensus       189 ~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~~  266 (398)
T 3ele_A          189 YSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKSL-SLPGERIGYVLVPDEV  266 (398)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTTS-SCTTTCCEEEECCTTS
T ss_pred             CCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhcC-CCccceeEEEEEcchh
Confidence            87   6788899999      99999999999864332     11 2335789999999999 6678999999988763

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=99.93  E-value=7e-25  Score=193.26  Aligned_cols=227  Identities=14%  Similarity=0.144  Sum_probs=154.2

Q ss_pred             eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCC-----CceEEecchHHHH
Q 024619           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKA-----DRALCFTSGMAAL   83 (265)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~-----~~~i~~~~g~~al   83 (265)
                      ..+++|+.....++  ++|.+........  .....+.|++. |.+ +++++++++.+.+|.     +.++++++|++++
T Consensus        37 ~~~idl~~g~~~~~--~~~~v~~a~~~~~--~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~  112 (412)
T 2x5d_A           37 EDIIDLSMGNPDGP--TPPHIVEKLCTVA--QREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGL  112 (412)
T ss_dssp             CCCEECSSCCCCSC--CCHHHHHHHHHTC-----------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHH
T ss_pred             CCEEecCCCCCCCC--CCHHHHHHHHHHH--hCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHH
Confidence            45789983332233  3444433321111  11123467655 665 488888888777774     3566666667998


Q ss_pred             H-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-------CHHHHHhhcCCCceEEEEecCCCCcccc
Q 024619           84 A-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQI  155 (265)
Q Consensus        84 ~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~~~~~~~~i~~~~~~np~G~~  155 (265)
                      . ++..++++||+|+++.|+|+++...+    +..|.+++.++.+       |++++++++.+++++|++++|+||||.+
T Consensus       113 ~~~~~~~~~~gd~Vl~~~p~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~l~~p~nptG~~  188 (412)
T 2x5d_A          113 AHLMLATLDHGDTILVPNPSYPIHIYGA----VIAGAQVRSVPLVPGIDFFNELERAIRESIPKPRMMILGFPSNPTAQC  188 (412)
T ss_dssp             HHHHHHHCCTTCEEEEEESCCHHHHHHH----HHHTCEEEEEECSTTSCHHHHHHHHHHTEESCCSEEEEESSCTTTCCC
T ss_pred             HHHHHHhCCCCCEEEEcCCCchhHHHHH----HHcCCEEEEeecCCccCCCCCHHHHHHhcccCceEEEECCCCCCCCCc
Confidence            6 66778899999999999999887443    4568888888754       4688888888889999999999999999


Q ss_pred             cc---HHHHHHHHHHcCCEEEEeCCcCCCCCc-----CCCC----CCccEEEeccccccccCCCceeeEEEeechhHHHH
Q 024619          156 CD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLE----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE  223 (265)
Q Consensus       156 ~~---l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~~~----~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~  223 (265)
                      .+   +++|+++|+++|+++|+||+|+.+.+.     ....    .+.|+++.|+||++ |++|+++|+++++++. .+.
T Consensus       189 ~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~~-~~~  266 (412)
T 2x5d_A          189 VELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSY-NMAGWRIGFMVGNPEL-VSA  266 (412)
T ss_dssp             CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CC-SCTTSCCEEEEECHHH-HHH
T ss_pred             CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCcccc-CCcccceEEEEcCHHH-HHH
Confidence            75   689999999999999999999875531     1111    36789999999999 6678999999986644 444


Q ss_pred             HHHHHHhccCCCChhHHHHHHhcc
Q 024619          224 LYFLQNAEGSGLAPFDCWICLRGV  247 (265)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~l  247 (265)
                      +...........++..+..+...|
T Consensus       267 l~~~~~~~~~~~~~~~~~a~~~~l  290 (412)
T 2x5d_A          267 LARIKSYHDYGTFTPLQVAAIAAL  290 (412)
T ss_dssp             HHHHHHHHCCCCCHHHHHHHHHHH
T ss_pred             HHHHHhhhccCCCHHHHHHHHHHH
Confidence            444444444555655554433333

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=99.93  E-value=1e-25  Score=195.93  Aligned_cols=228  Identities=12%  Similarity=0.113  Sum_probs=160.5

Q ss_pred             ceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCC----CceEEecchHHHHH-
Q 024619           10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA----DRALCFTSGMAALA-   84 (265)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~----~~~i~~~~g~~al~-   84 (265)
                      +..+|+|+ +++.... ++|.+..+.....   ....+.|++.|...++++++++.+.+|.    +.++++++|++++. 
T Consensus        22 g~~~idl~-~~~~~~~-~~~~v~~a~~~~~---~~~~~~y~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a~~~   96 (377)
T 3fdb_A           22 GQGVLPLW-VAESDFS-TCPAVLQAITDAV---QREAFGYQPDGSLLSQATAEFYADRYGYQARPEWIFPIPDVVRGLYI   96 (377)
T ss_dssp             CTTSEECC-SSCCCSC-CCHHHHHHHHHHH---HTTCCSSCCSSCCHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHH
T ss_pred             CCCeeeec-ccCCCCC-CCHHHHHHHHHHH---HcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEeCChHHHHHH
Confidence            35689998 4443222 3333333221111   1124456654545688888888877663    34666666679986 


Q ss_pred             HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC---CHHHHHhhcCCCceEEEEecCCCCcccccc---H
Q 024619           85 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---DLDEVASAIGPWTKLVWVESPTNPRQQICD---I  158 (265)
Q Consensus        85 ~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l  158 (265)
                      ++..++++||+|+++.|+|+++..    .++..|.+++.++.+   |++++++++.++++++++++|+||||.+.+   +
T Consensus        97 ~~~~~~~~gd~vl~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l  172 (377)
T 3fdb_A           97 AIDHFTPAQSKVIVPTPAYPPFFH----LLSATQREGIFIDATGGINLHDVEKGFQAGARSILLCNPYNPLGMVFAPEWL  172 (377)
T ss_dssp             HHHHHSCTTCCEEEEESCCTHHHH----HHHHHTCCEEEEECTTSCCHHHHHHHHHTTCCEEEEESSBTTTTBCCCHHHH
T ss_pred             HHHHhcCCCCEEEEcCCCcHhHHH----HHHHcCCEEEEccCCCCCCHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHH
Confidence            677788999999999999999874    445578889998876   899999999888999999999999999974   7


Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCCCCcC-----CC-C---CCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHH
Q 024619          159 RKIAEMAHAHGALLLVDNSIMSPVLSR-----PL-E---LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN  229 (265)
Q Consensus       159 ~~i~~~a~~~~~~li~D~~~~~~~~~~-----~~-~---~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~  229 (265)
                      ++|+++|+++|+++|+||+|+...+..     +. .   .+.++++.|+||++ |.+|+++|+++..++.+.+.+.....
T Consensus       173 ~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~~~~~~~~~~~~  251 (377)
T 3fdb_A          173 NELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAPSKAW-NIAGLKCAQIIFSNPSDAEHWQQLSP  251 (377)
T ss_dssp             HHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEECSTTTT-TCGGGCCEEEECCSHHHHHHHHHSCH
T ss_pred             HHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEeChHhc-cCcchhheEEEeCCHHHHHHHHHHHH
Confidence            888888999999999999998643321     11 1   24569999999999 66789999888766566555544443


Q ss_pred             hccCCCChhHHHHHHhcc
Q 024619          230 AEGSGLAPFDCWICLRGV  247 (265)
Q Consensus       230 ~~~~~~~~~~~~~~~~~l  247 (265)
                      ......++..+..+...+
T Consensus       252 ~~~~~~~~~~~~a~~~~l  269 (377)
T 3fdb_A          252 VIKDGASTLGLIAAEAAY  269 (377)
T ss_dssp             HHHCCCCHHHHHHHHHHH
T ss_pred             hhcCCCCHHHHHHHHHHH
Confidence            344556655554433333

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=99.93  E-value=3.3e-25  Score=192.79  Aligned_cols=196  Identities=18%  Similarity=0.217  Sum_probs=146.7

Q ss_pred             CCCccCCCCChhHHHHHHHHHhHhC---CCceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeE
Q 024619           45 GPYDYTRSGNPTRDALESLLAKLDK---ADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV  120 (265)
Q Consensus        45 ~~~~y~~~g~~~~~~l~~~l~~~~g---~~~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~  120 (265)
                      ..+.|++.  +...++++.++++++   .+.++++++|++|+. ++..++++||+|+++.|+|+++.    ..++..|.+
T Consensus        55 ~~~~y~~~--~g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~----~~~~~~g~~  128 (375)
T 3op7_A           55 TKLNYGWI--EGSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLY----DIPKSLGAE  128 (375)
T ss_dssp             SCCSSCCT--TCCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHHH----HHHHHTTCE
T ss_pred             CCcCCCCC--CChHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhHH----HHHHHcCCE
Confidence            34566665  223456667777652   345777777779986 67788999999999999999887    344567888


Q ss_pred             EEeecCC-------CHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCcC-C---
Q 024619          121 VKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR-P---  186 (265)
Q Consensus       121 ~~~~~~~-------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~~-~---  186 (265)
                      ++.++.+       |++++++++.+++++|++++|+||||.+.|   +++|+++|++||+++|+||+|+...... +   
T Consensus       129 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~~~~~  208 (375)
T 3op7_A          129 VDLWQIEEENGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSELDVPSII  208 (375)
T ss_dssp             EEEEEEEGGGTTEECHHHHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCCCCHH
T ss_pred             EEEEeccccCCCCCCHHHHHHhhccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccccCCCchh
Confidence            8888754       899999999999999999999999999998   9999999999999999999998654431 1   


Q ss_pred             CCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619          187 LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       187 ~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      ...+.++++.|+||++ +.+|+++|++++++ .+.+.+...........++..++.+...++
T Consensus       209 ~~~~~~i~~~s~sK~~-~~~G~r~G~v~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~  268 (375)
T 3op7_A          209 EVYDKGIAVNSLSKTY-SLPGIRIGWVAANH-QVTDILRDYRDYTMICAGVFDDLVAQLALA  268 (375)
T ss_dssp             HHCTTEEEEEESSSSS-SCGGGCCEEEECCH-HHHHHHTTTGGGTTSCCCHHHHHHHHHHHH
T ss_pred             hhcCCEEEEeEChhhc-CCcccceEEEEeCH-HHHHHHHHHHhhhccCCCcHHHHHHHHHHh
Confidence            1235679999999999 56689999998854 454544444444444556555555444444

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=99.93  E-value=2.4e-24  Score=188.37  Aligned_cols=224  Identities=18%  Similarity=0.190  Sum_probs=154.5

Q ss_pred             eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCC----CceEEecchHHHHH
Q 024619           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGMAALA   84 (265)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~g~~al~   84 (265)
                      ..+|+|+ +++.. ...+|.+.......   .......|++. |.+ +++++++++.+.+|.    +.++++++|++|+.
T Consensus        31 ~~~i~l~-~g~~~-~~~~~~v~~a~~~~---~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al~  105 (391)
T 3h14_A           31 RRIIHME-VGQPG-TGAPRGAVEALAKS---LETDALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFL  105 (391)
T ss_dssp             CCCEECC-CSSCS-SCSCHHHHHHHHHH---HC----------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHH
T ss_pred             CCeEEcc-CCCCC-CCCCHHHHHHHHHH---HhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHHH
Confidence            4689998 44422 22234333222111   11134567766 665 588898888887763    24666666679986


Q ss_pred             -HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-------CHHHHHhhcCCCceEEEEecCCCCccccc
Q 024619           85 -AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQIC  156 (265)
Q Consensus        85 -~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~~~~~~~~i~~~~~~np~G~~~  156 (265)
                       ++..++++||+|+++.|+|+++..    .++..|.+++.++.+       |+++++++   ++++|++++|+||||.+.
T Consensus       106 ~~~~~l~~~gd~vl~~~p~~~~~~~----~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~---~~~~v~i~~p~nptG~~~  178 (391)
T 3h14_A          106 LAFTALFDSGDRVGIGAPGYPSYRQ----ILRALGLVPVDLPTAPENRLQPVPADFAGL---DLAGLMVASPANPTGTML  178 (391)
T ss_dssp             HHHHHHCCTTCEEEEEESCCHHHHH----HHHHTTCEEEEEECCGGGTTSCCHHHHTTS---CCSEEEEESSCTTTCCCC
T ss_pred             HHHHHhcCCCCEEEEcCCCCccHHH----HHHHcCCEEEEeecCcccCCCCCHHHHHhc---CCeEEEECCCCCCCCccC
Confidence             677789999999999999998874    445678899988864       78888776   799999999999999998


Q ss_pred             c---HHHHHHHHHHcCCEEEEeCCcCCCCCc----CCCC-CCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHH
Q 024619          157 D---IRKIAEMAHAHGALLLVDNSIMSPVLS----RPLE-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ  228 (265)
Q Consensus       157 ~---l~~i~~~a~~~~~~li~D~~~~~~~~~----~~~~-~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~  228 (265)
                      +   +++|+++|+++|+++|+||+|+...+.    .... .+.+++++|+||++ |++|+++|+++.+++.+ +.+....
T Consensus       179 ~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~~~-~~~~~~~  256 (391)
T 3h14_A          179 DHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYF-SMTGWRVGWMVVPEDQV-RVVERIA  256 (391)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTT-CCTTSCCEEEECCGGGH-HHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhcc-CCccceeEEEEeCHHHH-HHHHHHH
Confidence            6   899999999999999999999854432    1112 25679999999999 67789999999877544 4455555


Q ss_pred             HhccCCCChhHHHHHHhccC
Q 024619          229 NAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~l~  248 (265)
                      .......++..+..+...++
T Consensus       257 ~~~~~~~~~~~~~a~~~~l~  276 (391)
T 3h14_A          257 QNMFICAPHASQVAALAALD  276 (391)
T ss_dssp             HHTTCCCCHHHHHHHHHHTT
T ss_pred             hhhccCCCHHHHHHHHHHhC
Confidence            55555566655555444443

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=99.93  E-value=2.5e-25  Score=196.73  Aligned_cols=224  Identities=17%  Similarity=0.151  Sum_probs=160.5

Q ss_pred             ceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhC--CC--ceEEecchHHHHH-
Q 024619           10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK--AD--RALCFTSGMAALA-   84 (265)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g--~~--~~i~~~~g~~al~-   84 (265)
                      ...+|+|+ ..+.....+|.+..+......    ...+.|++.....++++++++++.+|  .+  .++++++|++|+. 
T Consensus        60 g~~~i~~~-~~~~~~~~~~~v~~a~~~~~~----~~~~~y~~~~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~  134 (421)
T 3l8a_A           60 NPELLQMW-VADMDFLPVPEIKEAIINYGR----EHIFGYNYFNDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISI  134 (421)
T ss_dssp             CTTCEECC-SSCCCSCCCHHHHHHHHHHHH----HCCSSCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHH
T ss_pred             CCCeeecc-cCCCCCCCCHHHHHHHHHHHh----cCCcCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHH
Confidence            34688887 555544444444444321111    13456666554569999999999988  33  3555555568986 


Q ss_pred             HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC--------CHHHHHhhcC-CCceEEEEecCCCCcccc
Q 024619           85 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--------DLDEVASAIG-PWTKLVWVESPTNPRQQI  155 (265)
Q Consensus        85 ~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--------d~~~l~~~~~-~~~~~i~~~~~~np~G~~  155 (265)
                      ++..+.++||+|++..|+|+++..    .++..|.+++.++..        |++++++++. +++++|++++|+||+|.+
T Consensus       135 a~~~~~~~gd~Vi~~~~~y~~~~~----~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~nptG~~  210 (421)
T 3l8a_A          135 ALQAFSEKGDAVLINSPVYYPFAR----TIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNPGGRV  210 (421)
T ss_dssp             HHHHHSCTEEEEEEEESCCHHHHH----HHHHTTEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESSBTTTTBC
T ss_pred             HHHHhcCCCCEEEECCCCcHHHHH----HHHHCCCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCCCCCCCCc
Confidence            677788999999999999998874    345578888888753        8999999997 789999999999999998


Q ss_pred             ---ccHHHHHHHHHHcCCEEEEeCCcCCCCCc-----CC-----CCCCccEEEeccccccccCCCceeeEEEeechhHHH
Q 024619          156 ---CDIRKIAEMAHAHGALLLVDNSIMSPVLS-----RP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK  222 (265)
Q Consensus       156 ---~~l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~-----~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~  222 (265)
                         .++++|.++|++||+++|+||+|+...+.     ..     ...+.++.+.|+||++ +.+|+++|+++.+++.+.+
T Consensus       211 ~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~~~G~~~~~~~~l~~  289 (421)
T 3l8a_A          211 WDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTF-NIAGTKNSFAIIQNESLRR  289 (421)
T ss_dssp             CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHH-TCGGGCCEEEECCSHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhc-cCchhheEeEEcCCHHHHH
Confidence               56899999999999999999999753321     11     1125669999999999 6667899999988556655


Q ss_pred             HHHHHHHhc-cCCCChhHHHHH
Q 024619          223 ELYFLQNAE-GSGLAPFDCWIC  243 (265)
Q Consensus       223 ~~~~~~~~~-~~~~~~~~~~~~  243 (265)
                      .+....... ....++..+..+
T Consensus       290 ~~~~~~~~~~~~~~n~~~~~a~  311 (421)
T 3l8a_A          290 KFQYRQLANNQHEVPTVGMIAT  311 (421)
T ss_dssp             HHHHHHHHTTCSCCCHHHHHHH
T ss_pred             HHHHHHHhcccCCCCHHHHHHH
Confidence            555444333 234555554443

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.93  E-value=2.6e-24  Score=189.52  Aligned_cols=225  Identities=19%  Similarity=0.243  Sum_probs=159.3

Q ss_pred             eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCC----CceEEecchHHHHH
Q 024619           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGMAALA   84 (265)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~g~~al~   84 (265)
                      ..+++|+ .+++ +..++|.+.... ...   ......|+.. |.. +++++.+++.+.+|.    +.++++++|++|+.
T Consensus        43 ~~~i~l~-~~~~-~~~~~~~v~~a~-~~l---~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~  116 (409)
T 2gb3_A           43 VRIHHLN-IGQP-DLKTPEVFFERI-YEN---KPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAIL  116 (409)
T ss_dssp             CEEEECS-SCCC-CSCCCTHHHHHH-HHT---CCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHH
T ss_pred             CCEEecc-CCCC-CCCCCHHHHHHH-HHH---hcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHH
Confidence            4689998 5554 222344433322 211   1123457665 554 477888888776553    34666666679986


Q ss_pred             -HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCC------HHHHHhhcCCCceEEEEecCCCCccccc-
Q 024619           85 -AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCD------LDEVASAIGPWTKLVWVESPTNPRQQIC-  156 (265)
Q Consensus        85 -~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d------~~~l~~~~~~~~~~i~~~~~~np~G~~~-  156 (265)
                       ++..++++||+|++++|+|+++..    .++..|.+++.++.++      ++++++++.+++++|++++|+||||.+. 
T Consensus       117 ~~~~~~~~~gd~Vl~~~~~~~~~~~----~~~~~g~~~~~v~~~~~~~~~~~~~l~~~l~~~~~~v~~~~p~nptG~~~~  192 (409)
T 2gb3_A          117 FSFAVIANPGDEILVLEPFYANYNA----FAKIAGVKLIPVTRRMEEGFAIPQNLESFINERTKGIVLSNPCNPTGVVYG  192 (409)
T ss_dssp             HHHHHHCCTTCEEEEEESCCTHHHH----HHHHHTCEEEEEECCGGGTSCCCTTGGGGCCTTEEEEEEESSCTTTCCCCC
T ss_pred             HHHHHhCCCCCEEEEcCCCchhHHH----HHHHcCCEEEEeccCCCCCCccHHHHHHhhCcCCeEEEECCCCCCCCCCcC
Confidence             667778999999999999998874    3455788888888653      7888888888899999999999999986 


Q ss_pred             --cHHHHHHHHHHcCCEEEEeCCcCCCCCc----CCC-C-CCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHH
Q 024619          157 --DIRKIAEMAHAHGALLLVDNSIMSPVLS----RPL-E-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ  228 (265)
Q Consensus       157 --~l~~i~~~a~~~~~~li~D~~~~~~~~~----~~~-~-~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~  228 (265)
                        ++++|+++|+++|+++|+||+|+.+.+.    ... . .+.|++++|+||++ |++|+++|+++++++.+.+.+....
T Consensus       193 ~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~~l~~~l~~~~  271 (409)
T 2gb3_A          193 KDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKF-SACGARVGCLITRNEELISHAMKLA  271 (409)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTT-TCGGGCCEEEECSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCccccCCCCEEEEecchhcc-CCccceEEEEEECcHHHHHHHHHHH
Confidence              4899999999999999999999865442    111 1 35799999999999 6678999999988834445444444


Q ss_pred             HhccCCCChhHHHHHHhcc
Q 024619          229 NAEGSGLAPFDCWICLRGV  247 (265)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~l  247 (265)
                      .... ..++..+..+...|
T Consensus       272 ~~~~-~~~~~~~~a~~~~l  289 (409)
T 2gb3_A          272 QGRL-APPLLEQIGSVGLL  289 (409)
T ss_dssp             HHSC-CCCHHHHHHHHHHH
T ss_pred             hccC-CCCHHHHHHHHHHH
Confidence            4443 55555555544444

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=99.93  E-value=1.7e-24  Score=188.73  Aligned_cols=188  Identities=19%  Similarity=0.180  Sum_probs=142.2

Q ss_pred             CccCCCCChhHHHHHHHHHhHhCCC--ceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEe
Q 024619           47 YDYTRSGNPTRDALESLLAKLDKAD--RALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKR  123 (265)
Q Consensus        47 ~~y~~~g~~~~~~l~~~l~~~~g~~--~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~  123 (265)
                      ..|+..  ....++++.++++++.+  +++++++|++++. ++..++++||+|++++|+|+++..    .++..|.+++.
T Consensus        55 ~~y~~~--~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~----~~~~~g~~~~~  128 (381)
T 1v2d_A           55 DQYAPP--AGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLP----DAFLAGAKARL  128 (381)
T ss_dssp             CSCCCT--TCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH----HHHHTTCEEEE
T ss_pred             cCCCCC--CCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHH----HHHHcCCEEEE
Confidence            345554  12456777778888875  5666666679986 667778999999999999999874    44567888888


Q ss_pred             ecCC--------CHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc----CCC-
Q 024619          124 VNTC--------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----RPL-  187 (265)
Q Consensus       124 ~~~~--------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~----~~~-  187 (265)
                      ++.+        |++++++++.+++++|++++|+||||.+.+   +++|+++|+++|+++|+||+|+...++    ... 
T Consensus       129 v~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~  208 (381)
T 1v2d_A          129 VRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLRE  208 (381)
T ss_dssp             EECEEETTEEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHH
T ss_pred             EeCCCCCccCCcCHHHHHHhcCcCCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHH
Confidence            8764        799999999888999999999999999975   899999999999999999999865432    111 


Q ss_pred             -CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHH
Q 024619          188 -ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI  242 (265)
Q Consensus       188 -~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (265)
                       ..+.|+++.|+||++ +++|+++|+++++++.+ +.+...........++..+..
T Consensus       209 ~~~~~~~~~~s~sK~~-~~~G~r~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a  262 (381)
T 1v2d_A          209 FAPERTFTVGSAGKRL-EATGYRVGWIVGPKEFM-PRLAGMRQWTSFSAPTPLQAG  262 (381)
T ss_dssp             HCTTTEEEEEEHHHHT-TCGGGCCEEEECCTTTH-HHHHHHHHHHTSSCCHHHHHH
T ss_pred             hcCCCEEEEeechhhc-CCcccceEEEEeCHHHH-HHHHHHHhhcccCCCcHHHHH
Confidence             347899999999999 66789999999876544 434333333344445444433

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=99.93  E-value=1.3e-24  Score=190.53  Aligned_cols=221  Identities=12%  Similarity=0.136  Sum_probs=155.7

Q ss_pred             eEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCCh-hHHHHHHHHHhHhC--CC--ceEEecchHHHHH-H
Q 024619           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNP-TRDALESLLAKLDK--AD--RALCFTSGMAALA-A   85 (265)
Q Consensus        12 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~-~~~~l~~~l~~~~g--~~--~~i~~~~g~~al~-~   85 (265)
                      .+++|+ .++ .+..++|.+........   ......|+.. .+ +++++++++.+.+|  .+  .++++++|++|+. +
T Consensus        32 ~~i~l~-~~~-~~~~~~~~v~~a~~~~~---~~~~~~y~~~-~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~  105 (399)
T 1c7n_A           32 EVVPLS-VAD-MEFKNPPELIEGLKKYL---DETVLGYTGP-TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNA  105 (399)
T ss_dssp             TCCCCC-SSS-CSSCCCHHHHHHHHHHH---HHCCCSSBCC-CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHH
T ss_pred             Cceeee-ecC-CCCCCCHHHHHHHHHHH---hcCCCCCCCC-cHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHH
Confidence            578887 444 33334444433321111   0123456554 43 58888888887777  33  4555555678986 6


Q ss_pred             HHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC--------CCHHHHHhhcC-CCceEEEEecCCCCccccc
Q 024619           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT--------CDLDEVASAIG-PWTKLVWVESPTNPRQQIC  156 (265)
Q Consensus        86 ~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~d~~~l~~~~~-~~~~~i~~~~~~np~G~~~  156 (265)
                      +..++++||+|+++.|+|+++..    .++..|.+++.++.        .|++++++++. +++++|++++|+||||.+.
T Consensus       106 ~~~l~~~gd~vl~~~p~~~~~~~----~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~  181 (399)
T 1c7n_A          106 VREFTKPGDGVIIITPVYYPFFM----AIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVW  181 (399)
T ss_dssp             HHHHCCTTCEEEECSSCCTHHHH----HHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCC
T ss_pred             HHHhcCCCCEEEEcCCCcHhHHH----HHHHcCCEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEEcCCCCCCCcCc
Confidence            77788999999999999999874    44567889988875        47899999987 7899999999999999998


Q ss_pred             c---HHHHHHHHHHcCCEEEEeCCcCCCCCc-----CCCC-----CCccEEEeccccccccCCCceeeEEEeechhHHHH
Q 024619          157 D---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLE-----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE  223 (265)
Q Consensus       157 ~---l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~~~-----~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~  223 (265)
                      +   +++|+++|+++|+++|+||+|+...+.     ....     .+.++++.|+||++ +++|+++|+++++++.+.+.
T Consensus       182 ~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~~~~~~  260 (399)
T 1c7n_A          182 KKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTF-NIAGMGMSNIIIKNPDIRER  260 (399)
T ss_dssp             CHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHH-TCGGGCCEEEECCCHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhc-cccchheEEEEECCHHHHHH
Confidence            7   899999999999999999999864431     1111     24679999999999 66789999999876555554


Q ss_pred             HHHHHHhccC-CCChhHHHHH
Q 024619          224 LYFLQNAEGS-GLAPFDCWIC  243 (265)
Q Consensus       224 ~~~~~~~~~~-~~~~~~~~~~  243 (265)
                      +......... ..++..++.+
T Consensus       261 l~~~~~~~~~~~~~~~~~~a~  281 (399)
T 1c7n_A          261 FTKSRDATSGMPFTTLGYKAC  281 (399)
T ss_dssp             HHHHHHHTTCCCCCHHHHHHH
T ss_pred             HHHHHhhcccCCCCHHHHHHH
Confidence            5444444332 3455544443

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=99.92  E-value=7.5e-25  Score=189.00  Aligned_cols=222  Identities=15%  Similarity=0.180  Sum_probs=158.3

Q ss_pred             ceeEeeccCCCC-CCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCC--ceEEecchHHHHH-H
Q 024619           10 STLLMNFSNEFD-PYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD--RALCFTSGMAALA-A   85 (265)
Q Consensus        10 ~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~--~~i~~~~g~~al~-~   85 (265)
                      +..+++|+ +++ .++  ++|.+........  .  ....|   +.+...++++.+++++|.+  .++++++|++++. +
T Consensus        15 ~~~~i~l~-~~~~~~~--~~~~v~~a~~~~~--~--~~~~y---~~~~~~~l~~~la~~~~~~~~~i~~~~g~~~a~~~~   84 (354)
T 3ly1_A           15 TDNPIRIN-FNENPLG--MSPKAQAAARDAV--V--KANRY---AKNEILMLGNKLAAHHQVEAPSILLTAGSSEGIRAA   84 (354)
T ss_dssp             SSSCEECS-SCCCSSC--CCHHHHHHHHHTG--G--GTTSC---CHHHHHHHHHHHHHHTTSCGGGEEEESHHHHHHHHH
T ss_pred             CCceEEcc-CCCCCCC--CCHHHHHHHHHHH--h--hCcCC---CCCchHHHHHHHHHHhCCChHHEEEeCChHHHHHHH
Confidence            45789999 444 233  3343333321111  1  12334   2345789999999999865  4555555669986 6


Q ss_pred             HHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-----CHHHHHhhcC--CCceEEEEecCCCCccccccH
Q 024619           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIG--PWTKLVWVESPTNPRQQICDI  158 (265)
Q Consensus        86 ~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~~~--~~~~~i~~~~~~np~G~~~~l  158 (265)
                      +..++++||+|+++.|+|+++.    ..++..|.+++.++.+     |++++++++.  +++++|++++|+||||.+.++
T Consensus        85 ~~~l~~~gd~vl~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~v~l~~p~nptG~~~~~  160 (354)
T 3ly1_A           85 IEAYASLEAQLVIPELTYGDGE----HFAKIAGMKVTKVKMLDNWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTITPA  160 (354)
T ss_dssp             HHHHCCTTCEEEEESSSCTHHH----HHHHHTTCEEEEECCCTTSCCCHHHHHHHHHTCSSCEEEEEESSCTTTCCCCCH
T ss_pred             HHHHhCCCCeEEECCCCchHHH----HHHHHcCCEEEEecCCCCCCCCHHHHHHHhccCCCCCEEEEeCCCCCcCCCcCH
Confidence            6777899999999999999987    4445679999999977     8999999997  789999999999999999998


Q ss_pred             HHHHHHHHH--cCCEEEEeCCcCCCCCc----CCC----CC-CccEEEeccccccccCCCceeeEEEeechhHHHHHHHH
Q 024619          159 RKIAEMAHA--HGALLLVDNSIMSPVLS----RPL----EL-GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL  227 (265)
Q Consensus       159 ~~i~~~a~~--~~~~li~D~~~~~~~~~----~~~----~~-~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~  227 (265)
                      +++.++++.  +|+++|+||+|+.....    ...    .. +.+++++|+||++ |.+|+++|+++.+++.+ +.+...
T Consensus       161 ~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~~~-~~~~~~  238 (354)
T 3ly1_A          161 DVIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIH-AMAGMRVGYAVAHPTVI-ALMGRY  238 (354)
T ss_dssp             HHHHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTT-CCGGGCCEEEECCHHHH-HHHGGG
T ss_pred             HHHHHHHHhCCCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhc-cChhhhheeeecCHHHH-HHHHHh
Confidence            888777777  99999999999854432    111    22 6779999999999 66789999998865433 322222


Q ss_pred             HHhccCCCChhHHHHHHhccCc
Q 024619          228 QNAEGSGLAPFDCWICLRGVKT  249 (265)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~l~~  249 (265)
                      ..  ....++.....+...++.
T Consensus       239 ~~--~~~~~~~~~~a~~~~l~~  258 (354)
T 3ly1_A          239 VA--GEKINFSGVDAALASMND  258 (354)
T ss_dssp             TT--CSCCCHHHHHHHHHHTTC
T ss_pred             cC--CCCCCHHHHHHHHHHhcC
Confidence            22  245566666655555554

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=99.92  E-value=3e-24  Score=189.11  Aligned_cols=188  Identities=20%  Similarity=0.204  Sum_probs=142.2

Q ss_pred             CCccCCC-CCh-hHHHHHHHHHhHhCC----C-ceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCC
Q 024619           46 PYDYTRS-GNP-TRDALESLLAKLDKA----D-RALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (265)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~----~-~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~  117 (265)
                      ...|+.. |.+ +++++++++.+.+|.    + +++++++|++|+. ++..++++||+|++++|+|+++..    .++..
T Consensus        55 ~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~~~~~~~gd~Vl~~~~~y~~~~~----~~~~~  130 (411)
T 2o0r_A           55 VNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLVEPGSEVLLIEPFYDSYSP----VVAMA  130 (411)
T ss_dssp             CCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH----HHHHT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHH----HHHHc
Confidence            4567665 554 588888888888773    2 4555555568986 667788999999999999999874    34567


Q ss_pred             CeEEEeecC--------CCHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc--
Q 024619          118 GVVVKRVNT--------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS--  184 (265)
Q Consensus       118 g~~~~~~~~--------~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~--  184 (265)
                      |.+++.++.        .|++++++++.+++++|++++|+||||.+.+   +++|+++|+++|+++|+||+|+.+.+.  
T Consensus       131 g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~  210 (411)
T 2o0r_A          131 GAHRVTVPLVPDGRGFALDADALRRAVTPRTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHA  210 (411)
T ss_dssp             TCEEEEEECEEETTEEECCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC
T ss_pred             CCEEEEeeccccccCCCCCHHHHHHhhccCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC
Confidence            888888875        4799999999888999999999999999976   599999999999999999999865431  


Q ss_pred             ---CCC----CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhH
Q 024619          185 ---RPL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFD  239 (265)
Q Consensus       185 ---~~~----~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (265)
                         ...    ..+.|+++.|+||++ +++|+|+|+++++++. .+.+...........++..
T Consensus       211 ~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~~-~~~l~~~~~~~~~~~~~~~  270 (411)
T 2o0r_A          211 RHLPLAGFDGMAERTITISSAAKMF-NCTGWKIGWACGPAEL-IAGVRAAKQYLSYVGGAPF  270 (411)
T ss_dssp             CCCCGGGSTTTGGGEEEEEEHHHHT-TCTTTCEEEEECCHHH-HHHHHHHHHHHTSCCCTTH
T ss_pred             CCcChhhccCCCCCEEEEeechhhc-CCccceEEEEeeCHHH-HHHHHHHHhhccCCCChHH
Confidence               111    146799999999999 6778999999987644 4444444333333334333

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=99.92  E-value=1.2e-24  Score=192.00  Aligned_cols=225  Identities=18%  Similarity=0.167  Sum_probs=158.6

Q ss_pred             eEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCCC-----ceEEecchHHHHH
Q 024619           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKAD-----RALCFTSGMAALA   84 (265)
Q Consensus        12 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~~-----~~i~~~~g~~al~   84 (265)
                      .+|+|+ .++. +..++|.+..+...... .....+.|++. |.+ +++++++++.+.+|.+     +++++++|++++.
T Consensus        29 ~~i~l~-~g~~-~~~~~~~v~~a~~~~~~-~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~  105 (422)
T 3fvs_A           29 DVVNLG-QGFP-DFPPPDFAVEAFQHAVS-GDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALF  105 (422)
T ss_dssp             CCEECC-CSSC-SSCCCHHHHHHHHHHHH-SCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHH
T ss_pred             CceEeC-CCCC-CCCCCHHHHHHHHHHHh-CCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHH
Confidence            578998 4442 22233433332211111 00013567776 665 5899999999888753     3455555568986


Q ss_pred             -HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC-----------------CCHHHHHhhcCCCceEEEEe
Q 024619           85 -AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----------------CDLDEVASAIGPWTKLVWVE  146 (265)
Q Consensus        85 -~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----------------~d~~~l~~~~~~~~~~i~~~  146 (265)
                       ++..++++||+|+++.|+|+++..    .++..|.+++.++.                 .|++++++++.+++++|+++
T Consensus       106 ~~~~~~~~~gd~vl~~~p~~~~~~~----~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~~~~~v~~~  181 (422)
T 3fvs_A          106 TAFQALVDEGDEVIIIEPFFDCYEP----MTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLN  181 (422)
T ss_dssp             HHHHHHCCTTCEEEEEESCCTTHHH----HHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCTTEEEEEEE
T ss_pred             HHHHHHcCCCCEEEEcCCCchhhHH----HHHHcCCEEEEEecccccccccccccccCCCCCHHHHHhhcCCCceEEEEC
Confidence             677788999999999999999874    44557888887764                 37899999999899999999


Q ss_pred             cCCCCccccc---cHHHHHHHHHHcCCEEEEeCCcCCCCCc-----CC----CCCCccEEEeccccccccCCCceeeEEE
Q 024619          147 SPTNPRQQIC---DIRKIAEMAHAHGALLLVDNSIMSPVLS-----RP----LELGADIVMHSATKFIAGHSDVMAGVLA  214 (265)
Q Consensus       147 ~~~np~G~~~---~l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~----~~~~~di~~~s~sK~~~g~~g~~~G~v~  214 (265)
                      +|+||||.+.   ++++|+++|+++|+++|+||+|+...+.     ..    ...+.++++.|+||++ |++|++.|+++
T Consensus       182 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~-g~~G~r~G~~~  260 (422)
T 3fvs_A          182 TPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTF-SATGWKVGWVL  260 (422)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHH-TCGGGCCEEEE
T ss_pred             CCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhcc-CCccceEEEEE
Confidence            9999999998   5899999999999999999999854331     11    1235679999999999 67789999998


Q ss_pred             eechhHHHHHHHHHHhccCCCChhHHHHHHh
Q 024619          215 VKGERLAKELYFLQNAEGSGLAPFDCWICLR  245 (265)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (265)
                      .+++.+ +.+...........++..+..+..
T Consensus       261 ~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~  290 (422)
T 3fvs_A          261 GPDHIM-KHLRTVHQNSVFHCPTQSQAAVAE  290 (422)
T ss_dssp             CCHHHH-HHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred             eCHHHH-HHHHHHHhhccCCCCcHHHHHHHH
Confidence            877544 434444444444555555444333

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=99.92  E-value=2.1e-24  Score=188.52  Aligned_cols=219  Identities=19%  Similarity=0.219  Sum_probs=155.8

Q ss_pred             eEeeccCCCCC-CCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCC----C-ceEEecchHHHH
Q 024619           12 LLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKA----D-RALCFTSGMAAL   83 (265)
Q Consensus        12 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~----~-~~i~~~~g~~al   83 (265)
                      .+++|+ .+.+ ++  ++|.+........   ......|+.. |.+ +++++.+++++.+|.    + .++++++|++++
T Consensus        31 ~~i~l~-~~~~~~~--~~~~v~~a~~~~~---~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~  104 (386)
T 1u08_A           31 QAINLS-QGFPDFD--GPRYLQERLAHHV---AQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEAL  104 (386)
T ss_dssp             TCEECC-CSSCSSC--CCHHHHHHHHHHH---HTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHH
T ss_pred             CeEEec-CCCCCCC--CCHHHHHHHHHHH---HhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHH
Confidence            478888 4443 23  3343333221111   1123567666 665 588888888887773    2 455555666898


Q ss_pred             H-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC------CCHHHHHhhcCCCceEEEEecCCCCccccc
Q 024619           84 A-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT------CDLDEVASAIGPWTKLVWVESPTNPRQQIC  156 (265)
Q Consensus        84 ~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~------~d~~~l~~~~~~~~~~i~~~~~~np~G~~~  156 (265)
                      . ++..++++||+|++++|+|+++..    .++..|.+++.++.      .|++++++++.+++++|++++|+||||.+.
T Consensus       105 ~~~~~~~~~~gd~vl~~~p~~~~~~~----~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~  180 (386)
T 1u08_A          105 YAAITALVRNGDEVICFDPSYDSYAP----AIALSGGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTPHNPSATVW  180 (386)
T ss_dssp             HHHHHHHCCTTCEEEEEESCCTTHHH----HHHHTTCEEEEEECCTTTCCCCHHHHHHHCCTTEEEEEEESSCTTTCCCC
T ss_pred             HHHHHHhCCCCCEEEEeCCCchhHHH----HHHHcCCEEEEeecCcccCcCCHHHHHHhhcccCEEEEEeCCCCCCCccC
Confidence            6 667778999999999999999874    44567888888875      379999999988899999999999999997


Q ss_pred             c---HHHHHHHHHHcCCEEEEeCCcCCCCCc-----CCC----CCCccEEEeccccccccCCCceeeEEEeechhHHHHH
Q 024619          157 D---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL  224 (265)
Q Consensus       157 ~---l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~~----~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~  224 (265)
                      +   +++|+++|+++|+++|+||+|+...+.     ...    ..+.|+++.|+||++ +++|+|+|+++++++ +.+.+
T Consensus       181 ~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~-~~~~l  258 (386)
T 1u08_A          181 QQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTY-HMTGWKVGYCVAPAP-ISAEI  258 (386)
T ss_dssp             CHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHT-TCGGGCCEEEECCHH-HHHHH
T ss_pred             CHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhc-CCcccceEEEEcCHH-HHHHH
Confidence            5   799999999999999999999864331     111    236799999999999 667899999998765 44444


Q ss_pred             HHHHHhccCCCChhHHHH
Q 024619          225 YFLQNAEGSGLAPFDCWI  242 (265)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~  242 (265)
                      ...........+...+..
T Consensus       259 ~~~~~~~~~~~~~~~~~a  276 (386)
T 1u08_A          259 RKVHQYLTFSVNTPAQLA  276 (386)
T ss_dssp             HHHHHHHTSSCCHHHHHH
T ss_pred             HHHHHhhccCCChHHHHH
Confidence            444433344445444333

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=99.92  E-value=2.3e-24  Score=189.51  Aligned_cols=225  Identities=20%  Similarity=0.191  Sum_probs=157.7

Q ss_pred             eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCC-----CceEEecchHHHH
Q 024619           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKA-----DRALCFTSGMAAL   83 (265)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~-----~~~i~~~~g~~al   83 (265)
                      ..+|+|+ .++. +..++|.+..+....  ........|++. |.+ +++++++++.+.+|.     +.++++++|++++
T Consensus        23 ~~~i~l~-~~~~-~~~~~~~v~~a~~~~--~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~   98 (410)
T 3e2y_A           23 PSVVNLG-QGFP-DISPPSYVKEELSKA--AFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSL   98 (410)
T ss_dssp             TTSEECS-SCCC-CSCCCHHHHHHHHHH--HTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHH
T ss_pred             CCeEEec-CCCC-CCCCCHHHHHHHHHH--HhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHH
Confidence            4679998 4442 222333333322111  111123467766 664 588888888877653     3455555556888


Q ss_pred             H-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC----------------CHHHHHhhcCCCceEEEEe
Q 024619           84 A-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----------------DLDEVASAIGPWTKLVWVE  146 (265)
Q Consensus        84 ~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----------------d~~~l~~~~~~~~~~i~~~  146 (265)
                      . ++..++++||+|+++.|+|+.+..    .++..|.+++.++.+                |++++++++.+++++|+++
T Consensus        99 ~~~~~~~~~~gd~vl~~~p~~~~~~~----~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~~~~~v~~~  174 (410)
T 3e2y_A           99 FNSIQGLVDPGDEVIIMVPFYDCYEP----MVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSKTKAIILN  174 (410)
T ss_dssp             HHHHHHHCCTTCEEEEEESCCTTHHH----HHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCTTEEEEEEE
T ss_pred             HHHHHHhcCCCCEEEEeCCCchhhHH----HHHHcCCEEEEEeccccccccccccccCCcCCHHHHHhhcCCCceEEEEe
Confidence            6 677788999999999999999974    445578888887753                8999999998899999999


Q ss_pred             cCCCCccccc---cHHHHHHHHHHcCCEEEEeCCcCCCCCc-----CC----CCCCccEEEeccccccccCCCceeeEEE
Q 024619          147 SPTNPRQQIC---DIRKIAEMAHAHGALLLVDNSIMSPVLS-----RP----LELGADIVMHSATKFIAGHSDVMAGVLA  214 (265)
Q Consensus       147 ~~~np~G~~~---~l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~----~~~~~di~~~s~sK~~~g~~g~~~G~v~  214 (265)
                      +|+||||.+.   ++++|+++|+++|+++|+||+|+...+.     ..    ...+.++++.|+||++ |++|+++|+++
T Consensus       175 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~-g~~G~r~G~~~  253 (410)
T 3e2y_A          175 TPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTF-SVTGWKLGWSI  253 (410)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHS-SCGGGCCEEEE
T ss_pred             CCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhc-CCCCceEEEEE
Confidence            9999999994   6899999999999999999999754331     11    1224669999999999 66789999998


Q ss_pred             eechhHHHHHHHHHHhccCCCChhHHHHHHh
Q 024619          215 VKGERLAKELYFLQNAEGSGLAPFDCWICLR  245 (265)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (265)
                      .+++.+ +.+...........++..+..+..
T Consensus       254 ~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~  283 (410)
T 3e2y_A          254 GPAHLI-KHLQTVQQNSFYTCATPLQAALAE  283 (410)
T ss_dssp             CCHHHH-HHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred             ECHHHH-HHHHHHHHhhccCCChHHHHHHHH
Confidence            877554 434444444445556555544333

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=99.92  E-value=4.3e-25  Score=192.18  Aligned_cols=229  Identities=15%  Similarity=0.116  Sum_probs=154.4

Q ss_pred             eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCCC-----ceEEecchHHHH
Q 024619           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKAD-----RALCFTSGMAAL   83 (265)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~~-----~~i~~~~g~~al   83 (265)
                      ..+++|+.....++  ++|.+........  .....+.|++. |.+ +++++++++.+.+|.+     .++++++|++++
T Consensus        25 ~~~idl~~~~~~~~--~~~~v~~a~~~~~--~~~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a~  100 (376)
T 2dou_A           25 VGLIDLSIGSTDLP--PPEAPLKALAEAL--NDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGL  100 (376)
T ss_dssp             CCCEECSSCCCCCC--CCHHHHHHHHHHT--TCGGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHHH
T ss_pred             CCEEeccCCCCCCC--CCHHHHHHHHHHH--hCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHH
Confidence            46899983333334  3344333221111  11123456553 332 3666666666656864     344444556898


Q ss_pred             H-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC-----CCHHHHHhhcCCCceEEEEecCCCCcccccc
Q 024619           84 A-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----CDLDEVASAIGPWTKLVWVESPTNPRQQICD  157 (265)
Q Consensus        84 ~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~  157 (265)
                      . ++..++++||+|+++.|+|+++...    ++..|.+++.++.     .|++++++++.+++++|++++|+||||.+.+
T Consensus       101 ~~~~~~l~~~gd~vl~~~p~y~~~~~~----~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~  176 (376)
T 2dou_A          101 AHLLLALTEPEDLLLLPEVAYPSYFGA----ARVASLRTFLIPLREDGLADLKAVPEGVWREAKVLLLNYPNNPTGAVAD  176 (376)
T ss_dssp             HHHHHHHCCTTCEEEEESSCCHHHHHH----HHHTTCEEEEECBCTTSSBCGGGSCHHHHHHEEEEEECSSCTTTCCCCC
T ss_pred             HHHHHHhcCCCCEEEECCCCcHhHHHH----HHHcCCEEEEeeCCCCCCCCHHHHHHhhccCceEEEECCCCCCcCccCC
Confidence            6 6777888999999999999998743    4557888888875     3678888877777899999999999999976


Q ss_pred             ---HHHHHHHHHHcCCEEEEeCCcCCCCCc----CCCC----CCccEEEeccccccccCCCceeeEEEeechhHHHHHHH
Q 024619          158 ---IRKIAEMAHAHGALLLVDNSIMSPVLS----RPLE----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF  226 (265)
Q Consensus       158 ---l~~i~~~a~~~~~~li~D~~~~~~~~~----~~~~----~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~  226 (265)
                         +++|+++|+++|+++|+||+|+.+.+.    ....    .+.++++.|+||++ |.+|+++|+++.+++. .+.+..
T Consensus       177 ~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~~-~~~l~~  254 (376)
T 2dou_A          177 WGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSY-NLAGFRLGFALGSEEA-LARLER  254 (376)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHH-TCGGGCCEEEEECHHH-HHHHHH
T ss_pred             HHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhc-CChhheeEEEecCHHH-HHHHHH
Confidence               688999999999999999999865431    1121    25689999999999 5678999999877644 444444


Q ss_pred             HHHhccCCCChhHHHHHHhccCc
Q 024619          227 LQNAEGSGLAPFDCWICLRGVKT  249 (265)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~l~~  249 (265)
                      .........++..+..+...++.
T Consensus       255 ~~~~~~~~~~~~~~~a~~~~l~~  277 (376)
T 2dou_A          255 VKGVIDFNQYAGVLRMGVEALKT  277 (376)
T ss_dssp             HHHHHCCCSCHHHHHHHHHHHTS
T ss_pred             HHHhcccCCCHHHHHHHHHHHhC
Confidence            44444444565555555444443

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=99.92  E-value=1.2e-24  Score=192.78  Aligned_cols=199  Identities=19%  Similarity=0.173  Sum_probs=141.0

Q ss_pred             CcceeEeeccCCCCCC--CC-CCCCeeeccccccCCCCCCCCCccCCC-CChhHHHHHHHHHhHhC-------CCceEEe
Q 024619            8 GVSTLLMNFSNEFDPY--GA-LSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLDK-------ADRALCF   76 (265)
Q Consensus         8 ~~~~~~~~~~~~~~~~--g~-~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~g-------~~~~i~~   76 (265)
                      .++..+|+|+ ..++.  |. .++|.+..+....  ........|.+. |.   .++++.++++++       .++++++
T Consensus        51 ~~~~~~i~l~-~g~~~~~g~~~~~~~v~~a~~~~--~~~~~~~~y~~~~g~---~~lr~~la~~~~~~~~~~~~~~v~~t  124 (427)
T 3dyd_A           51 NPNKTMISLS-IGDPTVFGNLPTDPEVTQAMKDA--LDSGKYNGYAPSIGF---LSSREEIASYYHCPEAPLEAKDVILT  124 (427)
T ss_dssp             CTTSCCEECC-CSCTTTTSSSCCCHHHHHHHHHH--HHHCCSSSCCCTTCC---HHHHHHHHHHHCBTTBCCCGGGEEEE
T ss_pred             cCCCCEEeCC-CcCCCccCCCCCCHHHHHHHHHH--HhcCcCCCCCCCCCc---HHHHHHHHHHHhhcCCCCChHHEEEe
Confidence            3445689998 55543  22 2333333322111  111123466555 54   344444454444       3356666


Q ss_pred             cchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-------CHHHHHhhcCCCceEEEEecC
Q 024619           77 TSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESP  148 (265)
Q Consensus        77 ~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~~~~~~~~i~~~~~  148 (265)
                      ++|++|+. ++..++++||+|++++|+|+.+.    ..++..|.+++.++..       |++++++++.+++++|++++|
T Consensus       125 ~g~t~al~~~~~~l~~~gd~vl~~~p~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p  200 (427)
T 3dyd_A          125 SGCSQAIDLCLAVLANPGQNILVPRPGFSLYK----TLAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDEKTACLIVNNP  200 (427)
T ss_dssp             SSHHHHHHHHHHHHCCTTCEEEEEESCCTHHH----HHHHHTTCEEEEEEEEGGGTTEECHHHHHSSCCTTEEEEEEESS
T ss_pred             cCcHHHHHHHHHHhcCCCCEEEEcCCCchhHH----HHHHHcCCEEEEEecccccCCCCCHHHHHHHhccCCCEEEEECC
Confidence            66779996 67778899999999999999886    4456678888887752       899999999888999999999


Q ss_pred             CCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc-----CCCCCC---ccEEEeccccccccCCCceeeEEEeec
Q 024619          149 TNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLELG---ADIVMHSATKFIAGHSDVMAGVLAVKG  217 (265)
Q Consensus       149 ~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~~~~~---~di~~~s~sK~~~g~~g~~~G~v~~~~  217 (265)
                      +||||.+.+   +++|+++|+++|+++|+||+|+...+.     .....+   ..++++|+||.+ +.+|+|+|++++++
T Consensus       201 ~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~-~~~G~riG~~~~~~  279 (427)
T 3dyd_A          201 SNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRW-LVPGWRLGWILIHD  279 (427)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTS-SCGGGCCEEEEEEC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccC-CCcCcceEEEEecC
Confidence            999999988   999999999999999999999854321     111222   348889999998 56789999999885

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.92  E-value=3.6e-24  Score=187.27  Aligned_cols=221  Identities=17%  Similarity=0.209  Sum_probs=152.2

Q ss_pred             eEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCCh-hHHHHHHHHHhHhC--CC--ceEEecchHHHHH-H
Q 024619           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNP-TRDALESLLAKLDK--AD--RALCFTSGMAALA-A   85 (265)
Q Consensus        12 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~-~~~~l~~~l~~~~g--~~--~~i~~~~g~~al~-~   85 (265)
                      .+++|+ .++. +..++|.+........   ......|+..... +++++++++.+.+|  .+  .++++++|++++. +
T Consensus        29 ~~i~l~-~~~~-~~~~~~~v~~a~~~~~---~~~~~~y~~~~~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~  103 (390)
T 1d2f_A           29 DLLPFT-ISDM-DFATAPCIIEALNQRL---MHGVFGYSRWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSEL  103 (390)
T ss_dssp             -CEECC-SSSC-SSCCCHHHHHHHHHHH---TTCCCCCCCSCCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHH
T ss_pred             CeeEee-ecCC-CCCCCHHHHHHHHHHH---hCCCCCCCCCChHHHHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHH
Confidence            688998 5554 2224444433321111   1123456554345 67888888877776  33  4555555568986 6


Q ss_pred             HHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC--------CCHHHHHhhcCC-CceEEEEecCCCCccccc
Q 024619           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT--------CDLDEVASAIGP-WTKLVWVESPTNPRQQIC  156 (265)
Q Consensus        86 ~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~d~~~l~~~~~~-~~~~i~~~~~~np~G~~~  156 (265)
                      +..++++||+|+++.|+|+++...    ++..|.+++.++.        .|++++++++.+ ++++|++++|+||||.+.
T Consensus       104 ~~~l~~~gd~vl~~~p~y~~~~~~----~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~  179 (390)
T 1d2f_A          104 IRQWSETGEGVVIHTPAYDAFYKA----IEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVW  179 (390)
T ss_dssp             HHHSSCTTCEEEEEESCCHHHHHH----HHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCC
T ss_pred             HHHhcCCCCEEEEcCCCcHHHHHH----HHHCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEEeCCCCCCCcCc
Confidence            777789999999999999988744    3556888888875        479999999875 799999999999999997


Q ss_pred             c---HHHHHHHHHHcCCEEEEeCCcCCCCCc-----CCCCC--Cc-cEEEeccccccccCCCceeeEEEeechhHHHHHH
Q 024619          157 D---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLEL--GA-DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY  225 (265)
Q Consensus       157 ~---l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~~~~--~~-di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~  225 (265)
                      +   +++|+++|+++|+++|+||+|+...+.     .....  +. |. +.|+||++ |++|+++|+++++++.+.+.+.
T Consensus       180 ~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~-~~s~sK~~-~~~G~r~G~~~~~~~~~~~~~~  257 (390)
T 1d2f_A          180 TCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWAL-LTSGSKSF-NIPALTGAYGIIENSSSRDAYL  257 (390)
T ss_dssp             CTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEE-EECSHHHH-TCGGGCCEEEEECSHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchhhHhh-ccCccHhh-cccChhheEEEECCHHHHHHHH
Confidence            6   899999999999999999999865432     11122  22 67 99999999 6678999999987555555444


Q ss_pred             HHHH-hcc-CCCChhHHHHH
Q 024619          226 FLQN-AEG-SGLAPFDCWIC  243 (265)
Q Consensus       226 ~~~~-~~~-~~~~~~~~~~~  243 (265)
                      .... ... ...++..++.+
T Consensus       258 ~~~~~~~~~~~~~~~~~~a~  277 (390)
T 1d2f_A          258 SALKGRDGLSSPSVLALTAH  277 (390)
T ss_dssp             HHHHTTSCCCSCCHHHHHHH
T ss_pred             HHHhhhcccCCCCHHHHHHH
Confidence            4433 223 24455544433

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=99.92  E-value=2.2e-24  Score=189.31  Aligned_cols=198  Identities=13%  Similarity=0.077  Sum_probs=141.1

Q ss_pred             eEeeccCCCCCCCC-CCCCeeeccccccCCC-CCCCCCccCCC-CCh-hHHHHHHHHHhHhC----CCceEE--ecchHH
Q 024619           12 LLMNFSNEFDPYGA-LSTPLYQTATFKQPSA-TENGPYDYTRS-GNP-TRDALESLLAKLDK----ADRALC--FTSGMA   81 (265)
Q Consensus        12 ~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~-~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g----~~~~i~--~~~g~~   81 (265)
                      .+|+|+ .+.|+.. .++++........... .....+.|.+. |.+ +++++++++...+|    .+++++  +++|++
T Consensus        29 ~~i~l~-~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~  107 (401)
T 7aat_A           29 KKMNLG-VGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTG  107 (401)
T ss_dssp             TCEECC-CCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHH
T ss_pred             Cceeee-eeeEECCCCCEechHHHHHHHHHhcccccccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEecCcchH
Confidence            379999 7887433 3444322221100001 11246678776 776 48888888887765    455554  555668


Q ss_pred             HHH-HHHHh---cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-------CHHHHHhhc---CCCceEEEEec
Q 024619           82 ALA-AVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAI---GPWTKLVWVES  147 (265)
Q Consensus        82 al~-~~~~~---~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~~---~~~~~~i~~~~  147 (265)
                      ++. ++..+   +++||+|++++|+|+.+...    ++..|.+++.++.+       |++++++.+   .++++++++++
T Consensus       108 al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~  183 (401)
T 7aat_A          108 SLRVGANFLQRFFKFSRDVYLPKPSWGNHTPI----FRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHAC  183 (401)
T ss_dssp             HHHHHHHHHHHHCTTCCEEEEEESCCTTHHHH----HHHTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESS
T ss_pred             HHHHHHHHHHHhccCCCEEEEcCCCchhHHHH----HHHcCCeeEeeeeeccccCccCHHHHHHHHHhCCCCcEEEEeCC
Confidence            886 43333   48999999999999999744    45678888888753       566555544   46789999999


Q ss_pred             CCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCcCC-----------CCCCccEEEeccccccccCCCceeeEE
Q 024619          148 PTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSRP-----------LELGADIVMHSATKFIAGHSDVMAGVL  213 (265)
Q Consensus       148 ~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~~~-----------~~~~~di~~~s~sK~~~g~~g~~~G~v  213 (265)
                      |+||||.+.+   +++|+++|++||+++|+||+|....+...           ...+.++++.|+||.+ |++|+|.|++
T Consensus       184 p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~-~~~G~RiG~l  262 (401)
T 7aat_A          184 AHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNM-GLYGERAGAF  262 (401)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTS-CCGGGCEEEE
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCccc-ccccCceEEE
Confidence            9999998854   78999999999999999999976554311           2235679999999999 7789999998


Q ss_pred             Ee
Q 024619          214 AV  215 (265)
Q Consensus       214 ~~  215 (265)
                      +.
T Consensus       263 ~~  264 (401)
T 7aat_A          263 TV  264 (401)
T ss_dssp             EE
T ss_pred             EE
Confidence            86

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=99.92  E-value=1.3e-24  Score=189.00  Aligned_cols=224  Identities=15%  Similarity=0.086  Sum_probs=159.7

Q ss_pred             eEeeccCCCCC-CCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCC----CceEEecchHHHHH
Q 024619           12 LLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGMAALA   84 (265)
Q Consensus        12 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~g~~al~   84 (265)
                      .+|+|+ +++. ++  +||.+..+. . ...  .....|++. |.+ +++++++++++.+|.    +.++++++|++++.
T Consensus        24 ~~i~l~-~~~~~~~--~~~~v~~a~-~-~~~--~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~   96 (376)
T 3ezs_A           24 RGLDLG-IGEPQFE--TPKFIQDAL-K-NHT--HSLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLF   96 (376)
T ss_dssp             CCCBCS-SCCCCSC--CCHHHHHHH-H-TTG--GGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHH
T ss_pred             CEEEeC-CCCCCCC--CCHHHHHHH-H-Hhh--hhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHH
Confidence            789998 4443 33  333333322 1 111  234567776 665 599999999988885    24666666679986


Q ss_pred             -HHHHhcCC--CCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHH----HHHhhcCCCceEEEEecCCCCcccccc
Q 024619           85 -AVTHLLGT--GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLD----EVASAIGPWTKLVWVESPTNPRQQICD  157 (265)
Q Consensus        85 -~~~~~~~~--g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~----~l~~~~~~~~~~i~~~~~~np~G~~~~  157 (265)
                       ++..++++  ||+|+++.|+|+++.    ..++..|.+++.++.++.+    ++++++.+++++|++++|+||||.+.+
T Consensus        97 ~~~~~~~~~~~gd~vl~~~p~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~p~nptG~~~~  172 (376)
T 3ezs_A           97 NFPSFVLFDYQNPTIAYPNPFYQIYE----GAAKFIKAKSLLMPLTKENDFTPSLNEKELQEVDLVILNSPNNPTGRTLS  172 (376)
T ss_dssp             HHHHHHTTTCSSCEEEEEESCCTHHH----HHHHHTTCEEEEEECCGGGTSCCCCCHHHHHHCSEEEECSSCTTTCCCCC
T ss_pred             HHHHHHcCCCCCCEEEEecCCcHhHH----HHHHHcCCEEEEcccCCCCCcchhHHhhhccCCCEEEEcCCCCCcCCCCC
Confidence             67788899  999999999999887    4456678999998876432    455556567899999999999999976


Q ss_pred             ---HHHHHHHHHHcCCEEEEeCCcCCCCCc----CCC---------CCCccEEEeccccccccCCCceeeEEEeechhHH
Q 024619          158 ---IRKIAEMAHAHGALLLVDNSIMSPVLS----RPL---------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA  221 (265)
Q Consensus       158 ---l~~i~~~a~~~~~~li~D~~~~~~~~~----~~~---------~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~  221 (265)
                         +++|+++|+++|+++|+||+|+.....    ...         ..+.++++.|+||++ |.+|++.|+++.+++ +.
T Consensus       173 ~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~-~~  250 (376)
T 3ezs_A          173 LEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRS-SAPGLRSGFIAGDSR-LL  250 (376)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTT-TCGGGCCEEEEECHH-HH
T ss_pred             HHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhcc-CCccceeEEEeeCHH-HH
Confidence               678888899999999999999864432    111         356789999999999 667899999987654 44


Q ss_pred             HHHHHHHHhccCCCChhHHHHHHhccC
Q 024619          222 KELYFLQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      +.+...........++..+..+...++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~a~~~~l~  277 (376)
T 3ezs_A          251 EKYKAFRAYLGYTSANAIQKASEAAWL  277 (376)
T ss_dssp             HHHHHHHTTTCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhcCCCChHHHHHHHHHHh
Confidence            545444444455566665555444443

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=99.92  E-value=7.8e-25  Score=189.60  Aligned_cols=218  Identities=15%  Similarity=0.195  Sum_probs=153.5

Q ss_pred             eEeeccCCCCC-CCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCC--ceEEecchHHHHH-HHH
Q 024619           12 LLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD--RALCFTSGMAALA-AVT   87 (265)
Q Consensus        12 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~--~~i~~~~g~~al~-~~~   87 (265)
                      .+|+|+ ++++ ++  ++|.+..+. .. ...  ....|+.   +...++++.+++++|.+  .++++++|++++. ++.
T Consensus        33 ~~i~l~-~~~~~~~--~~~~v~~a~-~~-~~~--~~~~y~~---~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~  102 (363)
T 3ffh_A           33 KITKLS-SNENPLG--TSKKVAAIQ-AN-SSV--ETEIYPD---GWASSLRKEVADFYQLEEEELIFTAGVDELIELLTR  102 (363)
T ss_dssp             CCEECS-SCSCTTC--CCHHHHHHH-HT-CBS--CCCBC-------CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHH
T ss_pred             ceEEcc-CCCCCCC--CCHHHHHHH-HH-HHH--HhhcCCC---cchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHH
Confidence            579999 5533 33  333333322 11 111  2334432   34577888888888864  4556666678986 667


Q ss_pred             HhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHH
Q 024619           88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIA  162 (265)
Q Consensus        88 ~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~  162 (265)
                      .++++||+|+++.|+|+++.    ..++..|.+++.++.+     |++++++++.+++++|++++|+||||.+.|++++.
T Consensus       103 ~~~~~gd~vl~~~~~~~~~~----~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~~~~l~  178 (363)
T 3ffh_A          103 VLLDTTTNTVMATPTFVQYR----QNALIEGAEVREIPLLQDGEHDLEGMLNAIDEKTTIVWICNPNNPTGNYIELADIQ  178 (363)
T ss_dssp             HHCSTTCEEEEEESSCHHHH----HHHHHHTCEEEEEECCTTSCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHH
T ss_pred             HHccCCCEEEEcCCChHHHH----HHHHHcCCEEEEecCCCCCCcCHHHHHHhcccCCCEEEEeCCCCCcCCCcCHHHHH
Confidence            78899999999999998886    4446678999999877     89999999999999999999999999999999999


Q ss_pred             HHHHHc--CCEEEEeCCcCCCCCc-------CCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccC
Q 024619          163 EMAHAH--GALLLVDNSIMSPVLS-------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS  233 (265)
Q Consensus       163 ~~a~~~--~~~li~D~~~~~~~~~-------~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~  233 (265)
                      ++++.+  |+++|+||+|+....+       .....+.++++.|+||++ |++|+++|+++.+++.+ +.+....  ...
T Consensus       179 ~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~~~-~~l~~~~--~~~  254 (363)
T 3ffh_A          179 AFLDRVPSDVLVVLDEAYIEYVTPQPEKHEKLVRTYKNLIITRTFSKIY-GLASARVGYGIADKEII-RQLNIVR--PPF  254 (363)
T ss_dssp             HHHTTSCTTSEEEEECTTGGGCSSCCCCCGGGGGTCTTEEEEEESSSTT-CCSSCCCEEEEECHHHH-HHHHHTC--CSC
T ss_pred             HHHHhCCCCcEEEEeCchHhhcCccccCHHHHhhcCCCEEEEeechhhh-cCchhceeeeecCHHHH-HHHHHhC--CCC
Confidence            998888  9999999999843321       112235679999999999 67789999999865443 3333222  233


Q ss_pred             CCChhHHHHHHhcc
Q 024619          234 GLAPFDCWICLRGV  247 (265)
Q Consensus       234 ~~~~~~~~~~~~~l  247 (265)
                      ..++..++.+...+
T Consensus       255 ~~~~~~~~~~~~~l  268 (363)
T 3ffh_A          255 NTTSIGQKLAIEAI  268 (363)
T ss_dssp             CCBHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHh
Confidence            45555555544444

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=99.92  E-value=6.7e-24  Score=187.87  Aligned_cols=194  Identities=20%  Similarity=0.260  Sum_probs=145.8

Q ss_pred             CccCCC-CCh-hHHHHHHHHHhHhCCC----------ceEEecch-HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHh
Q 024619           47 YDYTRS-GNP-TRDALESLLAKLDKAD----------RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSR  112 (265)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~~l~~~~g~~----------~~i~~~~g-~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~  112 (265)
                      ..|++. |.+ +++++++++++.+|.+          +.+++++| ++++. ++..++++||+|++++|+|+.+.    .
T Consensus        72 ~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~----~  147 (425)
T 2r2n_A           72 LQYSPSAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTL----Q  147 (425)
T ss_dssp             TSCCCTTCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHH----H
T ss_pred             cCCCCCCCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHH----H
Confidence            568777 886 5999999999988753          35666666 58886 67778999999999999999887    4


Q ss_pred             hcCCCCeEEEeecCC----CHHHHHhhcC------------CCceEEEE-ecCCCCccccccH---HHHHHHHHHcCCEE
Q 024619          113 VTPKTGVVVKRVNTC----DLDEVASAIG------------PWTKLVWV-ESPTNPRQQICDI---RKIAEMAHAHGALL  172 (265)
Q Consensus       113 ~~~~~g~~~~~~~~~----d~~~l~~~~~------------~~~~~i~~-~~~~np~G~~~~l---~~i~~~a~~~~~~l  172 (265)
                      .++..|.+++.++.+    |++++++++.            +++++|++ ++|+||||.+.+.   ++|+++|++||+++
T Consensus       148 ~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~l  227 (425)
T 2r2n_A          148 SLHPLGCNIINVASDESGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLI  227 (425)
T ss_dssp             HHGGGTCEEEEECEETTEECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEE
T ss_pred             HHHHcCCEEEEeCcCCCCCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEE
Confidence            456788999888753    7888988876            35788866 7899999999864   59999999999999


Q ss_pred             EEeCCcCCCCCc-----CCC---CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHH
Q 024619          173 LVDNSIMSPVLS-----RPL---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL  244 (265)
Q Consensus       173 i~D~~~~~~~~~-----~~~---~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (265)
                      |+||+|+...+.     ...   ..+.+++++|+||++ + +|+|+|+++++++.+ +.+...........+...+..+.
T Consensus       228 i~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~-~-~GlRiG~~~~~~~l~-~~l~~~~~~~~~~~~~~~q~a~~  304 (425)
T 2r2n_A          228 IEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKII-S-SGLRIGFLTGPKPLI-ERVILHIQVSTLHPSTFNQLMIS  304 (425)
T ss_dssp             EEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTT-C-STTCCEEEEEEHHHH-HHHHHHHHTTTCSSCHHHHHHHH
T ss_pred             EEECCcccccCCCCCCCCccccCCCCCEEEEccchhhc-c-CccceEEEecCHHHH-HHHHHHHHHhcCCCCHHHHHHHH
Confidence            999999743221     111   234679999999999 5 789999999887544 44444444444555655554444


Q ss_pred             hcc
Q 024619          245 RGV  247 (265)
Q Consensus       245 ~~l  247 (265)
                      +.|
T Consensus       305 ~~l  307 (425)
T 2r2n_A          305 QLL  307 (425)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=99.92  E-value=2.9e-24  Score=190.20  Aligned_cols=222  Identities=19%  Similarity=0.214  Sum_probs=155.0

Q ss_pred             eEeeccCCCCC-CCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCC----C-ceEEecchHHHH
Q 024619           12 LLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKA----D-RALCFTSGMAAL   83 (265)
Q Consensus        12 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~----~-~~i~~~~g~~al   83 (265)
                      .+|+|+ .+.+ ++  ++|.+.................|++. |.+ +++++.+++.+.+|.    + .++++++|++++
T Consensus        38 ~~i~l~-~~~~~~~--~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~  114 (429)
T 1yiz_A           38 KPLNLG-QGFPDYH--APKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEAL  114 (429)
T ss_dssp             CCEECC-SSSCSSC--CCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHH
T ss_pred             CEEEec-CCCCCCC--CCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHH
Confidence            578998 4433 33  33433332211111111123567766 665 588888888887773    2 344555556898


Q ss_pred             H-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC---------------CCHHHHHhhcCCCceEEEEec
Q 024619           84 A-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT---------------CDLDEVASAIGPWTKLVWVES  147 (265)
Q Consensus        84 ~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------------~d~~~l~~~~~~~~~~i~~~~  147 (265)
                      . ++..++++||+|+++.|+|+.+...    ++..|.+++.++.               .|++++++++.+++++|++++
T Consensus       115 ~~~~~~~~~~gd~Vl~~~p~y~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~  190 (429)
T 1yiz_A          115 YATIQGHVDEGDEVIIIEPFFDCYEPM----VKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINT  190 (429)
T ss_dssp             HHHHHHHCCTTCEEEEEESCCTTHHHH----HHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCTTEEEEEEES
T ss_pred             HHHHHHhcCCCCEEEEcCCCchhHHHH----HHHcCCEEEEEeCCcccccccccccCcccCHHHHHHHhccCceEEEECC
Confidence            6 6677789999999999999999744    3456888887764               378999999988899999999


Q ss_pred             CCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc-----CC--C--CCCccEEEeccccccccCCCceeeEEEe
Q 024619          148 PTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RP--L--ELGADIVMHSATKFIAGHSDVMAGVLAV  215 (265)
Q Consensus       148 ~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~--~--~~~~di~~~s~sK~~~g~~g~~~G~v~~  215 (265)
                      |+||||.+.+   +++|+++|++||+++|+||+|+...+.     ..  .  ..+.|+++.|+||++ +++|+|+|++++
T Consensus       191 p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~-~~~G~r~G~~~~  269 (429)
T 1yiz_A          191 PHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTF-SLTGWKIGWAYG  269 (429)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHH-TCGGGCCEEEES
T ss_pred             CCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhcc-CCCCcceEEEEe
Confidence            9999999974   899999999999999999999853321     11  1  346799999999999 667899999998


Q ss_pred             echhHHHHHHHHHHhccCCCChhHHHH
Q 024619          216 KGERLAKELYFLQNAEGSGLAPFDCWI  242 (265)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (265)
                      +++ +.+.+...........++..+..
T Consensus       270 ~~~-~~~~l~~~~~~~~~~~~~~~~~a  295 (429)
T 1yiz_A          270 PEA-LLKNLQMVHQNCVYTCATPIQEA  295 (429)
T ss_dssp             CHH-HHHHHHHHHHTTTCCCCHHHHHH
T ss_pred             CHH-HHHHHHHHHhhcccCCChHHHHH
Confidence            765 44444444433344455444433

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=99.92  E-value=3e-25  Score=192.40  Aligned_cols=222  Identities=13%  Similarity=0.184  Sum_probs=154.9

Q ss_pred             eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCC--ceEEecchHHHHH-HHH
Q 024619           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD--RALCFTSGMAALA-AVT   87 (265)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~--~~i~~~~g~~al~-~~~   87 (265)
                      ..+|+|+...++++  ++|.+..+......    ....|+....   .++++.+++++|.+  .++++++|++++. ++.
T Consensus        30 ~~~i~l~~~~~~~~--~~~~v~~a~~~~~~----~~~~y~~~~~---~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~  100 (365)
T 3get_A           30 KEVIKLASNENPFG--TPPKAIECLRQNAN----KAHLYPDDSM---IELKSTLAQKYKVQNENIIIGAGSDQVIEFAIH  100 (365)
T ss_dssp             SCCEECSSCCCTTC--SCHHHHHHHHHHGG----GTTSCCCTTC---HHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHH
T ss_pred             CceEEecCCCCCCC--CCHHHHHHHHHHHH----hhccCCCCCh---HHHHHHHHHHhCCCcceEEECCCHHHHHHHHHH
Confidence            45899993323344  33333332211111    2344544422   57888888888865  4566666678986 677


Q ss_pred             HhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC-----CCHHHHHhhcCCCceEEEEecCCCCccccccHHHHH
Q 024619           88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----CDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIA  162 (265)
Q Consensus        88 ~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~  162 (265)
                      .++++||+|+++.|+|+.+..    .++..|.+++.++.     .|++++++++.+++++|++++|+||||.+.+++++.
T Consensus       101 ~l~~~gd~vl~~~~~~~~~~~----~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~  176 (365)
T 3get_A          101 SKLNSKNAFLQAGVTFAMYEI----YAKQCGAKCYKTQSITHNLDEFKKLYETHKDEIKLIFLCLPNNPLGECLDASEAT  176 (365)
T ss_dssp             HHCCTTCEEEECSSCCTHHHH----HHHHHTCEEEECSSSSCCHHHHHHHHHHTTTTEEEEEEESSCTTTCCCCCHHHHH
T ss_pred             HHhCCCCEEEEeCCChHHHHH----HHHHcCCEEEEEecCCCCCCCHHHHHHHhCCCCCEEEEcCCCCCCCCCcCHHHHH
Confidence            788999999999999998874    44567899999997     478899999999999999999999999999988888


Q ss_pred             HHHH--HcCCEEEEeCCcCCCCC-------cCC----CCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHH
Q 024619          163 EMAH--AHGALLLVDNSIMSPVL-------SRP----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN  229 (265)
Q Consensus       163 ~~a~--~~~~~li~D~~~~~~~~-------~~~----~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~  229 (265)
                      ++++  ++|+++|+||+|+...+       ...    ...+.+++++|+||++ |.+|++.|+++++++ +.+.+.....
T Consensus       177 ~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~-~~~~~~~~~~  254 (365)
T 3get_A          177 EFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLY-GLGGLRIGYGIANAN-IISAFYKLRA  254 (365)
T ss_dssp             HHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTT-SCTTTCCEEEEECHH-HHHHHHHHSC
T ss_pred             HHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHh-cCcchheEEEEcCHH-HHHHHHHhcC
Confidence            8887  67999999999984331       111    1236789999999999 667899999998554 4343333222


Q ss_pred             hccCCCChhHHHHHHhccCc
Q 024619          230 AEGSGLAPFDCWICLRGVKT  249 (265)
Q Consensus       230 ~~~~~~~~~~~~~~~~~l~~  249 (265)
                        ....++..++.+...++.
T Consensus       255 --~~~~~~~~~~~~~~~l~~  272 (365)
T 3get_A          255 --PFNVSNLALKAAVAAMDD  272 (365)
T ss_dssp             --TTCSCHHHHHHHHHHHTC
T ss_pred             --CCCcCHHHHHHHHHHhCC
Confidence              234555555555554443

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=99.92  E-value=2.8e-24  Score=184.11  Aligned_cols=195  Identities=15%  Similarity=0.171  Sum_probs=143.5

Q ss_pred             CcceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCC-ceEEecchH-HHHHH
Q 024619            8 GVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD-RALCFTSGM-AALAA   85 (265)
Q Consensus         8 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~-~~i~~~~g~-~al~~   85 (265)
                      .....+|+|++..++++  ++|.+.........    ....|+   .+...++++.+++++|.+ +.+++++|+ +++.+
T Consensus        13 ~~~~~~i~l~~n~~~~~--~~~~v~~a~~~~~~----~~~~y~---~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~   83 (337)
T 3p1t_A           13 RAAAQAVCLAFNENPEA--VEPRVQAAIAAAAA----RINRYP---FDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDR   83 (337)
T ss_dssp             -CCCCCEECSSCCCCSC--CCHHHHHHHHHHGG----GTTSCC---TTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHHH
T ss_pred             cCCCCceEeeCCCCCCC--CCHHHHHHHHHhhh----hhccCC---CCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHHH
Confidence            34456899994335666  33444333211111    133442   356888999999999987 466666665 88875


Q ss_pred             HHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-----CHHHHHhhcCCCceEEEEecCCCCccccccHHH
Q 024619           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRK  160 (265)
Q Consensus        86 ~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~  160 (265)
                      +...+ +||+|++++|+|+++.    ..++..|.+++.++.+     |++++++.  .+++++++++|+||||.+.|+++
T Consensus        84 ~~~~~-~gd~vl~~~p~~~~~~----~~~~~~g~~~~~v~~~~~~~~d~~~l~~~--~~~~~v~i~~p~nptG~~~~~~~  156 (337)
T 3p1t_A           84 ISAEF-SSMRFVTAWPGFDGYR----ARIAVSGLRHFEIGLTDDLLLDPNDLAQV--SRDDCVVLANPSNPTGQALSAGE  156 (337)
T ss_dssp             HHHHS-TTSEEEEESSSCSHHH----HHHTTSCCEEEEECBCTTSSBCHHHHTTC--CTTEEEEEESSCTTTCCCCCHHH
T ss_pred             HHHhc-CCCeEEEeCCCcHHHH----HHHHHcCCEEEEecCCCCCCCCHHHHHhh--cCCCEEEEeCCCCCCCCCCCHHH
Confidence            55545 9999999999999987    5557789999998854     78888876  46899999999999999999999


Q ss_pred             HHHHHHHcCCEEEEeCCcCCCCCc---CCCCCCccEEEeccccccccCCCceeeEEEeechhH
Q 024619          161 IAEMAHAHGALLLVDNSIMSPVLS---RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       161 i~~~a~~~~~~li~D~~~~~~~~~---~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                      +.++|++++. +|+||+|+.....   .....+.+++++|+||++ |++|+++|+++.+++.+
T Consensus       157 l~~l~~~~~~-~ivDea~~~~~~~~~~~~~~~~~~i~~~S~sK~~-g~~G~r~G~~~~~~~~~  217 (337)
T 3p1t_A          157 LDQLRQRAGK-LLIDETYVDYSSFRARGLAYGENELVFRSFSKSY-GLAGLRLGALFGPSELI  217 (337)
T ss_dssp             HHHHHHHCSE-EEEECTTGGGSSCSSSCCCCBTTEEEEEESSSTT-CCTTTCCEEEECCHHHH
T ss_pred             HHHHHHhCCc-EEEECCChhhccccccccccCCCEEEEeeCchhc-cCcchheEEEEeCHHHH
Confidence            9999999997 5669999742221   122335789999999999 77889999998876544

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=99.92  E-value=1.8e-23  Score=184.02  Aligned_cols=226  Identities=15%  Similarity=0.139  Sum_probs=153.1

Q ss_pred             eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhC----CCce--EEecchHHH
Q 024619           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDK----ADRA--LCFTSGMAA   82 (265)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g----~~~~--i~~~~g~~a   82 (265)
                      ..+|+|+ +++|++..++|.+..... ..  .....+.|.+. |.+ +++++++++....+    .+++  +.+.+|+++
T Consensus        41 ~~~i~l~-~g~~~d~~~~~~v~~a~~-~a--~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga  116 (409)
T 4eu1_A           41 KRKVNLS-IGVYRDDADQPFVLECVK-QA--TLGTNMDYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGA  116 (409)
T ss_dssp             SSCEECC-CSSCCCTTSCCCCCHHHH-TC--CCCSCCCCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHH
T ss_pred             cCceeee-eeEEECCCCCEeecHHHH-hc--CccccccCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccchHH
Confidence            3579999 888855555554443321 21  33355678766 665 47777776643222    2233  336666677


Q ss_pred             HHH----HHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-------CHHHHHhhcC---CCceEEEEecC
Q 024619           83 LAA----VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIG---PWTKLVWVESP  148 (265)
Q Consensus        83 l~~----~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~~~---~~~~~i~~~~~  148 (265)
                      +.+    +..++++||+|++++|+|+++.    ..++..|.+++.++..       |++++++.+.   ++++++++++|
T Consensus       117 ~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p  192 (409)
T 4eu1_A          117 LRIGGDLLNRFVANCNRIYGPDVGYPNHE----SIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKAPEGSVILVHACA  192 (409)
T ss_dssp             HHHHHHHGGGTSSSCCEEEEESSCCTHHH----HHHHHTTCEEEEECCEETTTTEECHHHHHHHHHHSCTTCEEEEESSS
T ss_pred             HHHHHHHHHHhcCCCCEEEEeCCCcHhHH----HHHHHcCCeEEEEEeecCcCCcCcHHHHHHHHHhCCCCcEEEEECCC
Confidence            643    2345688999999999999997    4445678999998862       7899998884   35677788999


Q ss_pred             CCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCcC-----------CCCCCccEEEeccccccccCCCceeeEE-
Q 024619          149 TNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR-----------PLELGADIVMHSATKFIAGHSDVMAGVL-  213 (265)
Q Consensus       149 ~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~~-----------~~~~~~di~~~s~sK~~~g~~g~~~G~v-  213 (265)
                      +||||.+.+   +++|+++|+++|+++|+||+|+...+..           ....+.+++++|+||.+ |.+|+|.|++ 
T Consensus       193 ~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~riG~~~  271 (409)
T 4eu1_A          193 HNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNF-GLYGHRCGALH  271 (409)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTS-SCGGGCCEEEE
T ss_pred             CCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCcccc-cCccCCceEEE
Confidence            999999976   5669999999999999999998654431           01234568999999999 6778999997 


Q ss_pred             -Eeechh----HHHHHHHHHHhccCCCChhHHHHHHh
Q 024619          214 -AVKGER----LAKELYFLQNAEGSGLAPFDCWICLR  245 (265)
Q Consensus       214 -~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (265)
                       +..+..    +.+.+...........+...++.+..
T Consensus       272 ~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  308 (409)
T 4eu1_A          272 ISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSS  308 (409)
T ss_dssp             EECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred             EEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHH
Confidence             566554    43434443334444555554444333

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=99.92  E-value=1.6e-24  Score=190.73  Aligned_cols=227  Identities=15%  Similarity=0.078  Sum_probs=157.0

Q ss_pred             ceeEeeccCCCCC-CCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCCC----ceEEec-chHH
Q 024619           10 STLLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKAD----RALCFT-SGMA   81 (265)
Q Consensus        10 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~~----~~i~~~-~g~~   81 (265)
                      +..+|+|+ ++++ ++  ++|.+........  .......|++. |.+ +++++++++++.+|.+    +.++++ +|++
T Consensus        46 g~~~idl~-~g~~~~~--~~~~v~~a~~~~~--~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~  120 (404)
T 2o1b_A           46 PLPLINMA-VGIPDGP--TPQGIIDHFQKAL--TIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKN  120 (404)
T ss_dssp             SSCCEECC-CCSCSSC--CCHHHHHHHHHHT--TCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHH
T ss_pred             CCCEEecC-CcCCCCC--CCHHHHHHHHHHH--hCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHH
Confidence            34589998 4443 33  3343333221111  11113457764 665 5888888888877853    344444 5568


Q ss_pred             HHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC------CHHHHHhhcCCCceEEEEecCCCCccc
Q 024619           82 ALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQ  154 (265)
Q Consensus        82 al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~~~~~~~~i~~~~~~np~G~  154 (265)
                      ++. ++..++++||+|+++.|+|+++...    ++..|.+++.++.+      |++++++++.+++++|++++|+||||.
T Consensus       121 al~~~~~~l~~~gd~Vl~~~p~y~~~~~~----~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~  196 (404)
T 2o1b_A          121 GLVAVPTCVINPGDYVLLPDPGYTDYLAG----VLLADGKPVPLNLEPPHYLPDWSKVDSQIIDKTKLIYLTYPNNPTGS  196 (404)
T ss_dssp             HHHHHHHHHCCTTCEEEEEESCCSSHHHH----HHHTTCEEEEEECCTTTCCCCGGGSCHHHHHHEEEEEECSSCTTTCC
T ss_pred             HHHHHHHHhcCCCCEEEEcCCCchhHHHH----HHHCCCEEEEeccCcccCcCCHHHHHHhhccCceEEEEcCCCCCCCc
Confidence            886 6777889999999999999999744    35568888888753      678888877777899999999999999


Q ss_pred             ccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc----CCCCC----CccEEEeccccccccCCCceeeEEEeechhHHHH
Q 024619          155 ICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----RPLEL----GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE  223 (265)
Q Consensus       155 ~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~----~~~~~----~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~  223 (265)
                      +.+   +++|+++|+++|+++|+||+|+...+.    .....    +.++++.|+||++ |.+|+++|+++.+++. .+.
T Consensus       197 ~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~~-~~~  274 (404)
T 2o1b_A          197 TATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGY-NMSGFRVGFAVGNKDM-IQA  274 (404)
T ss_dssp             CCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTT-TCGGGCCEEEEECHHH-HHH
T ss_pred             cCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhc-cCchhheEeEecCHHH-HHH
Confidence            975   789999999999999999999865431    11222    4679999999999 5568999999886654 444


Q ss_pred             HHHHHHhccCCCChhHHHHHHhcc
Q 024619          224 LYFLQNAEGSGLAPFDCWICLRGV  247 (265)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~l  247 (265)
                      +...........++..++.+.+.+
T Consensus       275 l~~~~~~~~~~~~~~~~~a~~~~l  298 (404)
T 2o1b_A          275 LKKYQTHTNAGMFGALQDAAIYAL  298 (404)
T ss_dssp             HHHHHHHHCCCCCHHHHHHHHHHH
T ss_pred             HHHHHhhccCCCCHHHHHHHHHHH
Confidence            444444444455655555444443

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=99.92  E-value=2.4e-24  Score=189.54  Aligned_cols=195  Identities=19%  Similarity=0.182  Sum_probs=143.4

Q ss_pred             CccCCC-CCh-hHHHHHHHHHhHhCC----CceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCe
Q 024619           47 YDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV  119 (265)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~  119 (265)
                      ..|+.. |.+ +++++++++.+.+|.    +.++++++|++|+. ++..++++||+|++++|+|+++..    .++..|.
T Consensus        72 ~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~Vl~~~~~~~~~~~----~~~~~g~  147 (406)
T 1xi9_A           72 NYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTG----LVKFYGG  147 (406)
T ss_dssp             CSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH----HHHHTTC
T ss_pred             CCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCccHHH----HHHHcCC
Confidence            457665 654 588888888877653    24555555679986 667778999999999999998864    3455788


Q ss_pred             EEEeecCC-------CHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc----C
Q 024619          120 VVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----R  185 (265)
Q Consensus       120 ~~~~~~~~-------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~----~  185 (265)
                      +++.++.+       |++++++++.+++++|++++|+||||.+.+   +++|+++|+++|+++|+||+|+.+.+.    .
T Consensus       148 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~  227 (406)
T 1xi9_A          148 KPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHIS  227 (406)
T ss_dssp             EEEEEEEEGGGTSEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCC
T ss_pred             EEEEeecCCCcCCcCCHHHHHHhhCcCceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCC
Confidence            88887742       789999999888999999999999999875   899999999999999999999875542    1


Q ss_pred             CCC--CCc-cEEEeccccccccCCCceeeEEE--eech---hHHHHHHHHHHhccCCCChhHHHHHHhcc
Q 024619          186 PLE--LGA-DIVMHSATKFIAGHSDVMAGVLA--VKGE---RLAKELYFLQNAEGSGLAPFDCWICLRGV  247 (265)
Q Consensus       186 ~~~--~~~-di~~~s~sK~~~g~~g~~~G~v~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  247 (265)
                      ...  .+. |++++|+||++ +++|+++|+++  .++.   .+.+.+....... ...++..++.+...+
T Consensus       228 ~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~a~~~~l  295 (406)
T 1xi9_A          228 PGSLTKDVPVIVMNGLSKVY-FATGWRLGYMYFVDPENKLSEVREAIDRLARIR-LCPNTPAQFAAIAGL  295 (406)
T ss_dssp             HHHHCSSSCEEEEEESTTTT-CCGGGCCEEEEEECTTCTTHHHHHHHHHHHHHT-CCSCSHHHHHHHHHH
T ss_pred             HHHcCCCceEEEEecccccc-CCCccEEEEEEEecCchhHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHH
Confidence            111  356 89999999999 56788999998  6651   3444444444333 444444444433333

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=99.92  E-value=8e-24  Score=184.29  Aligned_cols=160  Identities=15%  Similarity=0.144  Sum_probs=133.8

Q ss_pred             hhHHHHHHHHHhHhCCC--ceE-EecchHHHHH-HHHHhcCCCCEEEEcCCCCCC--hHHHHHhhcCCCCeEEEeecC--
Q 024619           55 PTRDALESLLAKLDKAD--RAL-CFTSGMAALA-AVTHLLGTGEEIVAGDDLYGG--TDRLLSRVTPKTGVVVKRVNT--  126 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~--~~i-~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~--~~~~~~~~~~~~g~~~~~~~~--  126 (265)
                      +.++++++++++++|.+  +.+ ++++|++|+. ++..++++||+|++++|+|++  +.    ..++..|.+++.++.  
T Consensus        53 ~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~----~~~~~~g~~~~~v~~~~  128 (386)
T 2dr1_A           53 KVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNGVSKGGKVLVTIIGAFGKRYK----EVVESNGRKAVVLEYEP  128 (386)
T ss_dssp             HHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHHSCTTCEEEEEESSHHHHHHH----HHHHHTTCEEEEEECCT
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHhhcCCCeEEEEcCCchhHHHH----HHHHHhCCceEEEecCC
Confidence            56999999999999986  545 4556669986 667778999999999999987  43    455667889998886  


Q ss_pred             ---CCHHHHHhhc--CCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEecccc
Q 024619          127 ---CDLDEVASAI--GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATK  200 (265)
Q Consensus       127 ---~d~~~l~~~~--~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK  200 (265)
                         .|++++++++  .+++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.+... .....+.|++++|+||
T Consensus       129 ~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK  208 (386)
T 2dr1_A          129 GKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGADIKFDKWGLDVVFSSSQK  208 (386)
T ss_dssp             TCCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEEEETTS
T ss_pred             CCCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEEccccccCccccccccCCcEEEEeccc
Confidence               4899999998  568999999999999999999999999999999999999999987663 3334578999999999


Q ss_pred             ccccCCCceeeEEEeechhH
Q 024619          201 FIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       201 ~~~g~~g~~~G~v~~~~~~~  220 (265)
                      +++++.|  +|+++++++.+
T Consensus       209 ~~~~~~g--~G~~~~~~~~~  226 (386)
T 2dr1_A          209 AFGVPPG--LAIGAFSERFL  226 (386)
T ss_dssp             TTCCCSS--CEEEEECHHHH
T ss_pred             cccCCCc--eEEEEECHHHH
Confidence            9977766  59998887544

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=99.92  E-value=1.1e-24  Score=194.41  Aligned_cols=194  Identities=15%  Similarity=0.131  Sum_probs=143.7

Q ss_pred             CccCCC-CCh-hHHHHHHHHHhHhCC--Cc-eEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeE
Q 024619           47 YDYTRS-GNP-TRDALESLLAKLDKA--DR-ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV  120 (265)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~~l~~~~g~--~~-~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~  120 (265)
                      +.|++. |.+ +++++++++.+.+|.  .+ ++++++|++++. ++..++++||+|+++.|+|+++..    .++..|.+
T Consensus       112 ~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al~~~~~~l~~~Gd~Vlv~~p~y~~~~~----~~~~~g~~  187 (448)
T 3aow_A          112 LQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQALDLIGRVFLNPGDIVVVEAPTYLAALQ----AFNFYEPQ  187 (448)
T ss_dssp             HSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH----HHHTTCCE
T ss_pred             hCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHHHHHHHHHcCCCCEEEEeCCChHHHHH----HHHHcCCE
Confidence            567776 665 588888888777786  24 445555568986 677788999999999999998874    44567889


Q ss_pred             EEeecCC----CHHHHHhhcC----C--CceEE-EEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc--
Q 024619          121 VKRVNTC----DLDEVASAIG----P--WTKLV-WVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS--  184 (265)
Q Consensus       121 ~~~~~~~----d~~~l~~~~~----~--~~~~i-~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~--  184 (265)
                      ++.++.+    |++++++++.    +  ++++| ++++++||||.+.+   +++|+++|+++|++||+||+|+...+.  
T Consensus       188 ~~~v~~~~~g~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~  267 (448)
T 3aow_A          188 YIQIPLDDEGMKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGN  267 (448)
T ss_dssp             EEEEEEETTEECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSC
T ss_pred             EEEeccCCCCCCHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCC
Confidence            8888763    7899998886    5  78887 46899999999976   579999999999999999999865432  


Q ss_pred             ---CCC---CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhcc
Q 024619          185 ---RPL---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV  247 (265)
Q Consensus       185 ---~~~---~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  247 (265)
                         ...   ..+.++++.|+||++ + +|+|+|+++++++.+ +.+...........++..+..+.+.|
T Consensus       268 ~~~~~~~~~~~~~vi~~~S~SK~~-~-~GlriG~v~~~~~l~-~~l~~~~~~~~~~~~~~~q~a~~~~L  333 (448)
T 3aow_A          268 PEKKIKALDNEGRVIYLGTFSKIL-A-PGFRIGWMVGDPGII-RKMEIAKQSTDLCTNVFGQVVAWRYV  333 (448)
T ss_dssp             CCCCTGGGCTTSCEEEEEESTTTT-C-GGGCCEEEEECHHHH-HHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred             CCcCHHhcCCCCCEEEEccchhhc-c-ccccEEEEEeCHHHH-HHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence               111   225689999999999 5 689999999886544 44444443333444555544444333

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=99.92  E-value=6e-24  Score=188.34  Aligned_cols=208  Identities=19%  Similarity=0.219  Sum_probs=157.1

Q ss_pred             hhHHHHHHHHHhHhCCCceEE---ecchHHHHH-HHHHhcCCCCEEEEcC-CCCCChHHHHH------hhcCCCCeEEEe
Q 024619           55 PTRDALESLLAKLDKADRALC---FTSGMAALA-AVTHLLGTGEEIVAGD-DLYGGTDRLLS------RVTPKTGVVVKR  123 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~---~~~g~~al~-~~~~~~~~g~~viv~~-~~~~~~~~~~~------~~~~~~g~~~~~  123 (265)
                      +.++++++.+++++|.+..++   +++|++|+. ++.+++++||+|++++ +.|+.+...+.      ..++..|++++.
T Consensus        65 ~~~~~l~~~la~~~g~~~~~~~i~~~sGt~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~~~  144 (431)
T 3ht4_A           65 IGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYNA  144 (431)
T ss_dssp             HHHHHHHHHHHHHTTCSEECCBTTSCSHHHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEEEE
T ss_pred             hhHHHHHHHHHHHhCCCcccccceeeCHHHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCCEEEE
Confidence            459999999999999986555   789999986 6777899999999998 99998874432      344567999999


Q ss_pred             ecCC-----CHHHHHhhcCCCceEEEEec-CCCCccc---cccHHHHHHHHHH--cCCEEEEeCCcCCCCC-cCCCCCCc
Q 024619          124 VNTC-----DLDEVASAIGPWTKLVWVES-PTNPRQQ---ICDIRKIAEMAHA--HGALLLVDNSIMSPVL-SRPLELGA  191 (265)
Q Consensus       124 ~~~~-----d~~~l~~~~~~~~~~i~~~~-~~np~G~---~~~l~~i~~~a~~--~~~~li~D~~~~~~~~-~~~~~~~~  191 (265)
                      ++.+     |++++++++.+++++|++++ |+||+|.   ..++++|+++|++  +|+++++|++|+.+.. ..+...+.
T Consensus       145 v~~~~~~~~d~e~l~~~l~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~~~~g~  224 (431)
T 3ht4_A          145 VPLTEGGLVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPCHVGA  224 (431)
T ss_dssp             CCBCTTSSBCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCGGGTTC
T ss_pred             eCCCCCCCcCHHHHHhhcCCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCccccCC
Confidence            9974     99999999999999999995 6666554   4679999999999  9999999999998875 45667789


Q ss_pred             cEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccC--C--CChhHHHHHHhccCchHhhHHHHhhchhc
Q 024619          192 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS--G--LAPFDCWICLRGVKTMALRVEKQQVCFFD  263 (265)
Q Consensus       192 di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  263 (265)
                      |++++|++|+++|..+..+|+++++++.+ +.........+.  .  .+...++.+++.++.+..+.++..+++..
T Consensus       225 Di~~~S~sK~lgg~~~~~GG~v~~~~~li-~~l~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~  299 (431)
T 3ht4_A          225 DLMAGSLIKNPGGGIVKTGGYIVGKEQYV-EACAYRLTSPGIGAEAGASLYSLQEMYQGFFLAPHVAGQALKGAIF  299 (431)
T ss_dssp             SEEEEETTSGGGTTTCSSCEEEEECHHHH-HHHHHHHSCTTTTTSCSCCCSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEcCccccCCCCCCCceEEEEecHHHH-HHHHHHhccCCcccccCccHHHHHHHHhHhhhHHHHHHHHHHHHHH
Confidence            99999999999764444569998876544 434333332221  1  22222455667777666666666665543

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=99.92  E-value=3.1e-24  Score=190.24  Aligned_cols=235  Identities=14%  Similarity=0.146  Sum_probs=153.6

Q ss_pred             eeEeeccCCCCCCCCCCCCeeeccccccCCC-CCCCCCccCCC-CCh-hHHHHHHHHHhHhCCC-ceEEecchH-HHHHH
Q 024619           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSA-TENGPYDYTRS-GNP-TRDALESLLAKLDKAD-RALCFTSGM-AALAA   85 (265)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~~-~~i~~~~g~-~al~~   85 (265)
                      ..+|+|+ ++++.-+.++.+.++........ ...+.+.|++. |.+ +++++++++.+.++.+ +.+++++|+ +++.+
T Consensus        56 ~~~i~l~-~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~~al~~  134 (432)
T 3ei9_A           56 AQVISLG-IGDTTEPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAKCDISR  134 (432)
T ss_dssp             CCCEECS-SCCCCSCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHH
T ss_pred             CCeEEcc-CCCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCCcceEEECCChHHHHHH
Confidence            3689999 88887544444544433211111 11234567665 654 4777777776555554 455566554 88877


Q ss_pred             HHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC---------eEEEeecCCCHHHHHhhc--CCCceEEEEecCCCCccc
Q 024619           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG---------VVVKRVNTCDLDEVASAI--GPWTKLVWVESPTNPRQQ  154 (265)
Q Consensus        86 ~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g---------~~~~~~~~~d~~~l~~~~--~~~~~~i~~~~~~np~G~  154 (265)
                      +..++++||.|++++|+|+++...+.. ....+         .+++.++.++.+.+...+  .+++++|++++|+||||.
T Consensus       135 l~~l~~~gd~Vl~~~p~y~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~l~~p~NPtG~  213 (432)
T 3ei9_A          135 LQVMFGSNVTIAVQDPSYPAYVDSSVI-MGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLSTVGRTDIIFFCSPNNPTGA  213 (432)
T ss_dssp             HHHHHCTTCCEEEEESCCTHHHHHHHH-HTCSCCEETTTTEETTCEEEECCGGGTTSCCGGGCCCCSEEEEESSCTTTCC
T ss_pred             HHHHcCCCCEEEEeCCCCHHHHHHHHH-cCCcccccccccccCceEEeccCcccCCcCChhhCCCCCEEEEeCCCCCCCC
Confidence            788899999999999999999866532 23322         245555544222221111  357899999999999999


Q ss_pred             ccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc----CC----CCCCccEEEeccccccccCCCceeeEEEeechhH---
Q 024619          155 ICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----RP----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERL---  220 (265)
Q Consensus       155 ~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~----~~----~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~---  220 (265)
                      +.+   +++|+++|++||+++|+||+|+.....    ..    ...+.++++.|+||++ |.+|+|+|+++++++.+   
T Consensus       214 ~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~r~G~~~~~~~~~~~~  292 (432)
T 3ei9_A          214 AATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYA-GFTGVRLGWTVIPKKLLYSD  292 (432)
T ss_dssp             CCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHH-CTTTTCCEEEECCTTCBCTT
T ss_pred             CCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhcc-CCcccceEEEEEChHHhhcc
Confidence            975   678888899999999999999854332    11    1124679999999999 67789999999888662   


Q ss_pred             ----HHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619          221 ----AKELYFLQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       221 ----~~~~~~~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                          ...+...........++.....+...++
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~  324 (432)
T 3ei9_A          293 GFPVAKDFNRIICTCFNGASNISQAGALACLT  324 (432)
T ss_dssp             SCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSS
T ss_pred             hHHHHHHHHHHhccccCCCCHHHHHHHHHHHh
Confidence                3444444444444455555554444443

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=99.92  E-value=9.7e-25  Score=192.16  Aligned_cols=163  Identities=26%  Similarity=0.255  Sum_probs=135.7

Q ss_pred             hhHHHHHHHHHhHhCC---CceEEecchHHHHH-HHHHh----cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC
Q 024619           55 PTRDALESLLAKLDKA---DRALCFTSGMAALA-AVTHL----LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT  126 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~---~~~i~~~~g~~al~-~~~~~----~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~  126 (265)
                      +..+++++.+++++|.   +.++++++|++|+. ++..+    +++||+|++++|+|++....+...++..|.+++.++.
T Consensus        72 ~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~  151 (420)
T 1t3i_A           72 DAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQL  151 (420)
T ss_dssp             HHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECB
T ss_pred             HHHHHHHHHHHHHcCCCCCCeEEEcCChHHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEecc
Confidence            4578899999999998   45667777779986 66777    7899999999999999654444555667889998886


Q ss_pred             -----CCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEecccc
Q 024619          127 -----CDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATK  200 (265)
Q Consensus       127 -----~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK  200 (265)
                           .|++++++++.+++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.+... .....+.|++++|+||
T Consensus       152 ~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK  231 (420)
T 1t3i_A          152 DEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHK  231 (420)
T ss_dssp             CTTSSBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGG
T ss_pred             CCCCCcCHHHHHHhhCCCceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCCccCchhhcCCCEEEEehhh
Confidence                 4899999999989999999999999999999999999999999999999999987654 3334478999999999


Q ss_pred             ccccCCCceeeEEEeechhH
Q 024619          201 FIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       201 ~~~g~~g~~~G~v~~~~~~~  220 (265)
                      .+ |++|  +|+++.+++.+
T Consensus       232 ~~-~~~g--~G~~~~~~~~~  248 (420)
T 1t3i_A          232 MC-APTG--IGFLYGKEEIL  248 (420)
T ss_dssp             TT-SCTT--CEEEEECHHHH
T ss_pred             hc-CCCc--eEEEEEchHHH
Confidence            76 6666  68998876443

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=99.91  E-value=7.3e-24  Score=183.72  Aligned_cols=220  Identities=15%  Similarity=0.137  Sum_probs=149.7

Q ss_pred             eeEeeccCCCCC-CCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCC-ceE-EecchHHHHHHHH
Q 024619           11 TLLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD-RAL-CFTSGMAALAAVT   87 (265)
Q Consensus        11 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~-~~i-~~~~g~~al~~~~   87 (265)
                      ..+++|+ ++.. ++  ++|.+........  .  ....|+..   ...++++.+++++|.+ +.+ ++++|++++.++.
T Consensus        24 ~~~idl~-~~~~~~~--~~~~v~~a~~~~~--~--~~~~y~~~---~~~~l~~~la~~~~~~~~~v~~~~g~~~al~~~~   93 (364)
T 1lc5_A           24 DQLLDFS-ANINPLG--MPVSVKRALIDNL--D--CIERYPDA---DYFHLHQALARHHQVPASWILAGNGETESIFTVA   93 (364)
T ss_dssp             GGSEECS-SCCCTTC--CCHHHHHHHHHTG--G--GGGSCCCT---TCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHH
T ss_pred             cceEEec-cccCCCC--CCHHHHHHHHHHH--H--HhhcCCCC---CHHHHHHHHHHHHCcCHHHEEECCCHHHHHHHHH
Confidence            4589998 4442 33  3344333221111  1  12445433   3567778888888875 444 4455568987444


Q ss_pred             HhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCC------HHHHHhhcCCCceEEEEecCCCCcccccc---H
Q 024619           88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCD------LDEVASAIGPWTKLVWVESPTNPRQQICD---I  158 (265)
Q Consensus        88 ~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d------~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l  158 (265)
                      ..+ +||+|+++.|+|+++...    ++..|.+++.++.+.      ++++.+.+.+++++|++++|+||||.+.+   +
T Consensus        94 ~~~-~gd~vl~~~p~y~~~~~~----~~~~g~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l  168 (364)
T 1lc5_A           94 SGL-KPRRAMIVTPGFAEYGRA----LAQSGCEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNPTGLLPERPLL  168 (364)
T ss_dssp             HHH-CCSEEEEEESCCTHHHHH----HHHTTCEEEEEECCGGGTTCCCTTHHHHCCTTCCEEEEESSCTTTCCCCCHHHH
T ss_pred             HHc-CCCeEEEeCCCcHHHHHH----HHHcCCeEEEEeCCcccccchhHHHHHhccCCCCEEEEeCCCCCCCCCCCHHHH
Confidence            444 789999999999998744    455688988888652      35566666678899999999999999987   8


Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCCCCc--CC----CCCCccEEEeccccccccCCCceeeEEE-eechhHHHHHHHHHHhc
Q 024619          159 RKIAEMAHAHGALLLVDNSIMSPVLS--RP----LELGADIVMHSATKFIAGHSDVMAGVLA-VKGERLAKELYFLQNAE  231 (265)
Q Consensus       159 ~~i~~~a~~~~~~li~D~~~~~~~~~--~~----~~~~~di~~~s~sK~~~g~~g~~~G~v~-~~~~~~~~~~~~~~~~~  231 (265)
                      ++|+++|+++|+++|+||+|+.+.+.  ..    ...+.++++.|+||++ |.+|+++|+++ .+++ +.+.+....  .
T Consensus       169 ~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~~-~~~~l~~~~--~  244 (364)
T 1lc5_A          169 QAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFY-AIPGLRLGYLVNSDDA-AMARMRRQQ--M  244 (364)
T ss_dssp             HHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTT-TCTTTCCEEEECCCHH-HHHHHHHHS--C
T ss_pred             HHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhh-cCCccceEEEEECCHH-HHHHHHHhC--C
Confidence            99999999999999999999855431  11    2346789999999999 66789999998 6554 434333322  2


Q ss_pred             cCCCChhHHHHHHhccCc
Q 024619          232 GSGLAPFDCWICLRGVKT  249 (265)
Q Consensus       232 ~~~~~~~~~~~~~~~l~~  249 (265)
                      ....++..++.+.+.++.
T Consensus       245 ~~~~~~~~~~~~~~~l~~  262 (364)
T 1lc5_A          245 PWSVNALAALAGEVALQD  262 (364)
T ss_dssp             TTCSCHHHHHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHhC
Confidence            345566666666666654

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=99.91  E-value=4e-23  Score=178.75  Aligned_cols=213  Identities=17%  Similarity=0.174  Sum_probs=150.1

Q ss_pred             eEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCC-ceEEecch-HHHHH-HHHH
Q 024619           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD-RALCFTSG-MAALA-AVTH   88 (265)
Q Consensus        12 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~-~~i~~~~g-~~al~-~~~~   88 (265)
                      .+|+|+...+.+|+  +|.+ +    .     .....|+..+   ..++++.+++++|.+ +.+++++| ++++. ++..
T Consensus        30 ~~i~l~~~~~~~~~--~~~v-a----~-----~~~~~Y~~~~---~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~   94 (356)
T 1fg7_A           30 GDVWLNANEYPTAV--EFQL-T----Q-----QTLNRYPECQ---PKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRA   94 (356)
T ss_dssp             CSEECSSCCCSSCC--CCCC-C----C-----CCTTSCCCSS---CHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHH
T ss_pred             ceEEeeCCCCCCCC--CHhH-h----h-----hhhccCCCcc---HHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHH
Confidence            57899844444554  2333 1    1     1234565543   467778888888876 45666665 58886 6777


Q ss_pred             hcCCC-CEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC-----CCHHHHHhhcCCCceEEEEecCCCCccccccH---H
Q 024619           89 LLGTG-EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----CDLDEVASAIGPWTKLVWVESPTNPRQQICDI---R  159 (265)
Q Consensus        89 ~~~~g-~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l---~  159 (265)
                      ++++| |+|+++.|+|+.+...    ++..|.+++.++.     .|++++++++. ++++|++++|+||||.+.+.   +
T Consensus        95 ~~~~g~d~Vl~~~p~~~~~~~~----~~~~g~~~~~v~~~~~~~~d~~~l~~~i~-~~~~v~l~~p~nptG~~~~~~~l~  169 (356)
T 1fg7_A           95 FCEPGKDAILYCPPTYGMYSVS----AETIGVECRTVPTLDNWQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFR  169 (356)
T ss_dssp             HCCTTTCEEEECSSSCTHHHHH----HHHHTCEEEECCCCTTSCCCHHHHHTSCT-TEEEEEEESSCTTTCCCCCHHHHH
T ss_pred             HhCCCCCEEEEeCCChHHHHHH----HHHcCCEEEEeeCCCCCCCCHHHHHHHhc-CCCEEEEeCCCCCCCCCCCHHHHH
Confidence            88999 9999999999998744    3557889888885     37899999888 89999999999999999875   5


Q ss_pred             HHHHHHHHcCCEEEEeCCcCCCCC-cCC----CCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCC
Q 024619          160 KIAEMAHAHGALLLVDNSIMSPVL-SRP----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG  234 (265)
Q Consensus       160 ~i~~~a~~~~~~li~D~~~~~~~~-~~~----~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~  234 (265)
                      +|+++|+ +|+++|+||+|+.... ...    ...+.++++.|+||++ |++|+|.|+++++++. .+.+....  ....
T Consensus       170 ~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~~-~~~l~~~~--~~~~  244 (356)
T 1fg7_A          170 TLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAF-ALAGLRCGFTLANEEV-INLLMKVI--APYP  244 (356)
T ss_dssp             HHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSSTT-CCGGGCCEEEEECHHH-HHHHHHHS--CSSC
T ss_pred             HHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEecchHhh-cCchhhhEEEEeCHHH-HHHHHHhc--CCCC
Confidence            5566666 8999999999985431 111    2235789999999999 6678999999986644 34333222  2234


Q ss_pred             CChhHHHHHHhccCc
Q 024619          235 LAPFDCWICLRGVKT  249 (265)
Q Consensus       235 ~~~~~~~~~~~~l~~  249 (265)
                      .++..+..+.+.++.
T Consensus       245 ~~~~~~~a~~~~l~~  259 (356)
T 1fg7_A          245 LSTPVADIAAQALSP  259 (356)
T ss_dssp             SCHHHHHHHHHHTSH
T ss_pred             CCHHHHHHHHHHhcC
Confidence            556555555555554

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=99.91  E-value=2.6e-24  Score=189.92  Aligned_cols=162  Identities=22%  Similarity=0.228  Sum_probs=135.4

Q ss_pred             hhHHHHHHHHHhHhCCC--ceEEecchHHHHH-HHHHhc----CCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC
Q 024619           55 PTRDALESLLAKLDKAD--RALCFTSGMAALA-AVTHLL----GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC  127 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~--~~i~~~~g~~al~-~~~~~~----~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  127 (265)
                      +..+++++++++++|.+  .++++++|++|+. ++..+.    ++||+|+++.++|+++...+... +..|.+++.++.+
T Consensus        68 ~~~~~l~~~la~~~~~~~~~v~~~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-~~~g~~~~~v~~~  146 (423)
T 3lvm_A           68 EAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQL-EREGFEVTYLAPQ  146 (423)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHH-HHTTCEEEEECCC
T ss_pred             HHHHHHHHHHHHHcCCCCCeEEEeCChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHH-HHcCCEEEEeccC
Confidence            35789999999999987  5677777789986 555555    37999999999999987665333 5678999999875


Q ss_pred             -----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEeccccc
Q 024619          128 -----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKF  201 (265)
Q Consensus       128 -----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~  201 (265)
                           |++++++++.+++++|++++++||||.+.|+++|.++|+++|+++|+||+|+.+... .....+.|++++|+||+
T Consensus       147 ~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~  226 (423)
T 3lvm_A          147 RNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKI  226 (423)
T ss_dssp             TTSCCCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTSCCSEEEEESTTT
T ss_pred             CCCccCHHHHHHhcCCCcEEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCCCCcChhhcCCCEEEechHHh
Confidence                 899999999999999999999999999999999999999999999999999987763 34455789999999997


Q ss_pred             cccCCCceeeEEEeechhH
Q 024619          202 IAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       202 ~~g~~g~~~G~v~~~~~~~  220 (265)
                      + |+.|  +|+++++++..
T Consensus       227 ~-g~~g--~G~~~~~~~~~  242 (423)
T 3lvm_A          227 Y-GPKG--IGALYVRRKPR  242 (423)
T ss_dssp             T-SCSS--CEEEEECBTTB
T ss_pred             c-CCCC--eEEEEEecccc
Confidence            6 6666  58888876543

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=99.91  E-value=2e-24  Score=191.46  Aligned_cols=201  Identities=13%  Similarity=0.082  Sum_probs=145.8

Q ss_pred             eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCC-CccCCC-CCh-hHHHHHHHHHhHhCC----CceEEecchHHHH
Q 024619           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGP-YDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGMAAL   83 (265)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~g~~al   83 (265)
                      ..+|+|+ ++++. ..++|.+........   .... ..|++. |.+ +++++++++.+.+|.    ++++++++|++++
T Consensus        44 ~~~i~l~-~~~~~-~~~~~~v~~a~~~~~---~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~al  118 (437)
T 3g0t_A           44 TKFCRME-MGVPG-LPAPQIGIETEIQKL---REGVASIYPNLDGLPELKQEASRFAKLFVNIDIPARACVPTVGSMQGC  118 (437)
T ss_dssp             CCCEECC-CCSCC-SCCCHHHHHHHHHHH---HHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHH
T ss_pred             CCEEecc-CcCCC-CCCCHHHHHHHHHHH---hCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHHH
Confidence            4689998 55442 223343333221111   1123 567766 654 588888888777653    2455555556998


Q ss_pred             H-HHHHhc--CCCC--EEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC------CHHHHHhhc-CCCceEEEEecCCCC
Q 024619           84 A-AVTHLL--GTGE--EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAI-GPWTKLVWVESPTNP  151 (265)
Q Consensus        84 ~-~~~~~~--~~g~--~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~~-~~~~~~i~~~~~~np  151 (265)
                      . ++..++  ++||  +|+++.|+|+++...    ++..|.+++.++.+      |++++++++ .+++++|++++|+||
T Consensus       119 ~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~----~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~np  194 (437)
T 3g0t_A          119 FVSFLVANRTHKNREYGTLFIDPGFNLNKLQ----CRILGQKFESFDLFEYRGEKLREKLESYLQTGQFCSIIYSNPNNP  194 (437)
T ss_dssp             HHHHHHHTTSCTTCSCCEEEEESCCHHHHHH----HHHHTCCCEEEEGGGGCTTHHHHHHHHHHTTTCCCEEEEESSCTT
T ss_pred             HHHHHHHhcCCCCCccEEEEeCCCcHhHHHH----HHHcCCEEEEEeecCCCCccCHHHHHHHHhcCCceEEEEeCCCCC
Confidence            6 667777  9999  999999999988744    45567788888763      789999999 678999999999999


Q ss_pred             cccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc-------------CCC-CCCccEEEeccccccccCCCceeeEEE
Q 024619          152 RQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-------------RPL-ELGADIVMHSATKFIAGHSDVMAGVLA  214 (265)
Q Consensus       152 ~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~-------------~~~-~~~~di~~~s~sK~~~g~~g~~~G~v~  214 (265)
                      ||.+.+   +++|+++|+++|+++|+||+|+...+.             ... ..+.++++.|+||++ +++|+++|+++
T Consensus       195 tG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~  273 (437)
T 3g0t_A          195 TWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAF-SYAGQRIGVLM  273 (437)
T ss_dssp             TCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTT-SCGGGCCEEEE
T ss_pred             CCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCC-CCccceeEEEE
Confidence            999976   788999999999999999999854332             111 246779999999999 66789999999


Q ss_pred             eechhHH
Q 024619          215 VKGERLA  221 (265)
Q Consensus       215 ~~~~~~~  221 (265)
                      .+++.+.
T Consensus       274 ~~~~~~~  280 (437)
T 3g0t_A          274 ISGKLYE  280 (437)
T ss_dssp             ECHHHHH
T ss_pred             ECHHHhh
Confidence            8865443

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=99.91  E-value=8.3e-25  Score=189.71  Aligned_cols=223  Identities=17%  Similarity=0.190  Sum_probs=153.4

Q ss_pred             eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCC-C--ceEEecchHHHHH-HH
Q 024619           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA-D--RALCFTSGMAALA-AV   86 (265)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~-~--~~i~~~~g~~al~-~~   86 (265)
                      ..+|+|+ +++.....++.+..+......   ....+.|+.   +...++++.+++++|. +  .++++++|++++. ++
T Consensus        30 ~~~i~l~-~~~~~~~~~~~v~~a~~~~~~---~~~~~~y~~---~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~  102 (367)
T 3euc_A           30 HGLVKLD-AMENPYRLPPALRSELAARLG---EVALNRYPV---PSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLA  102 (367)
T ss_dssp             TTCEECC-SSCCCCCCCHHHHHHHHHHHH---HHHTTCSCC---CCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHH
T ss_pred             CCeeEcc-CCCCCCCCCHHHHHHHHHHhh---hhhhhcCCC---CcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHH
Confidence            4689998 554322223333333221111   001234433   3467888999999988 3  3445445568886 66


Q ss_pred             HHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-----CHHHHHhhcCC-CceEEEEecCCCCccccc---c
Q 024619           87 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGP-WTKLVWVESPTNPRQQIC---D  157 (265)
Q Consensus        87 ~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~~~~-~~~~i~~~~~~np~G~~~---~  157 (265)
                      ..++++||+|+++.|+|+++.    ..++..|.+++.++.+     |++++++++.+ ++++|++++|+||||.+.   +
T Consensus       103 ~~~~~~gd~Vl~~~~~~~~~~----~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~  178 (367)
T 3euc_A          103 LAAARPGAKVMAPVPGFVMYA----MSAQFAGLEFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLAYPNNPTGNLFDAAD  178 (367)
T ss_dssp             HHTCCTTCEEEEEESCSCCSC----HHHHTTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHH
T ss_pred             HHHcCCCCEEEEcCCCHHHHH----HHHHHcCCeEEEecCCCCCCCCHHHHHHHhhccCCCEEEEcCCCCCCCCCCCHHH
Confidence            778899999999999999986    4456789999998854     89999999987 899999999999999995   5


Q ss_pred             HHHHHHHHHHc--CCEEEEeCCcCCCCCc----CCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhc
Q 024619          158 IRKIAEMAHAH--GALLLVDNSIMSPVLS----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE  231 (265)
Q Consensus       158 l~~i~~~a~~~--~~~li~D~~~~~~~~~----~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~  231 (265)
                      +++|+++|++|  |+++|+||+|+.....    .....+.++++.|+||+  +.+|+++|+++.+++.+ +.+...  ..
T Consensus       179 l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~--~~~G~r~G~~~~~~~~~-~~~~~~--~~  253 (367)
T 3euc_A          179 MEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKL--GLAGIRLGYVAGDPQWL-EQLDKV--RP  253 (367)
T ss_dssp             HHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCT--TSCSCCEEEEEECHHHH-HHHGGG--CC
T ss_pred             HHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhh--cccccCceeeeeCHHHH-HHHHHh--CC
Confidence            78889999999  9999999999853321    22234567999999998  56788999999865433 322221  12


Q ss_pred             cCCCChhHHHHHHhccCc
Q 024619          232 GSGLAPFDCWICLRGVKT  249 (265)
Q Consensus       232 ~~~~~~~~~~~~~~~l~~  249 (265)
                      ....++..+..+...++.
T Consensus       254 ~~~~~~~~~~a~~~~l~~  271 (367)
T 3euc_A          254 PYNVNVLTEATALFALEH  271 (367)
T ss_dssp             SSCCCHHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHhcC
Confidence            234555555555554443

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=99.91  E-value=1.5e-24  Score=187.82  Aligned_cols=225  Identities=14%  Similarity=0.141  Sum_probs=148.8

Q ss_pred             eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCC--ceEEecchHHHHH-HHH
Q 024619           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD--RALCFTSGMAALA-AVT   87 (265)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~--~~i~~~~g~~al~-~~~   87 (265)
                      ..+|+|+ ++++.-+ ++|.+..+............+.|+..+   ..++++.+++++|.+  .++++++|++++. ++.
T Consensus        26 ~~~i~l~-~~~~~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~---~~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~~  100 (360)
T 3hdo_A           26 ASWIKLN-TNENPYP-PSPEVVKAILEELGPDGAALRIYPSAS---SQKLREVAGELYGFDPSWIIMANGSDEVLNNLIR  100 (360)
T ss_dssp             TTSEECS-SCCCSSC-CCHHHHHHHHHHHTTTCGGGGSCCCSS---CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHH
T ss_pred             cceeecc-CCCCCCC-CCHHHHHHHHHHHhcccchhhcCCCCc---hHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHH
Confidence            4589999 5554222 333333322111110000133454333   367888888888854  5666666679986 677


Q ss_pred             HhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcC-CCceEEEEecCCCCccccccHHHHHHHHH
Q 024619           88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAH  166 (265)
Q Consensus        88 ~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~-~~~~~i~~~~~~np~G~~~~l~~i~~~a~  166 (265)
                      .++++||+|+++.|+|+++.    ..++..|.+++.++.++...+++... .+++++++++|+||||.+.|++++.++|+
T Consensus       101 ~l~~~gd~Vl~~~p~~~~~~----~~~~~~g~~~~~v~~~~~~~~~~l~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~  176 (360)
T 3hdo_A          101 AFAAEGEEIGYVHPSYSYYG----TLAEVQGARVRTFGLTGDFRIAGFPERYEGKVFFLTTPNAPLGPSFPLEYIDELAR  176 (360)
T ss_dssp             HHCCTTCEEEEESSSCTHHH----HHHHHHTCEEEEECBCTTSSBTTCCSSBCSSEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             HHhCCCCEEEEcCCChHHHH----HHHHHCCCEEEEeeCCCCCCHHHHHhhcCCCEEEEeCCCCCCCCCcCHHHHHHHHH
Confidence            78899999999999999987    44456789999998764322222222 24679999999999999999999999999


Q ss_pred             HcCCEEEEeCCcCCCCCcCC----CCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHH
Q 024619          167 AHGALLLVDNSIMSPVLSRP----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI  242 (265)
Q Consensus       167 ~~~~~li~D~~~~~~~~~~~----~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (265)
                      ++|+++|+||+|+.......    ...+.++++.|+||++ +.+|+++|+++.+++ +.+.+....  .....++..++.
T Consensus       177 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~-~~~~~~~~~--~~~~~~~~~~~a  252 (360)
T 3hdo_A          177 RCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSY-SLAGMRIGLAIARPE-VIAALDKIR--DHYNLDRLAQAA  252 (360)
T ss_dssp             HBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTT-SCTTSCCEEEECCHH-HHHHHHHHS--CSCCSCHHHHHH
T ss_pred             HCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhh-cCCccceeeEeeCHH-HHHHHHHhC--CCCCCCHHHHHH
Confidence            99999999999985211111    1235679999999999 667899999988654 434333322  224455555555


Q ss_pred             HHhccC
Q 024619          243 CLRGVK  248 (265)
Q Consensus       243 ~~~~l~  248 (265)
                      +...++
T Consensus       253 ~~~~l~  258 (360)
T 3hdo_A          253 CVAALR  258 (360)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            444444

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=99.91  E-value=2.7e-23  Score=180.69  Aligned_cols=164  Identities=16%  Similarity=0.131  Sum_probs=137.1

Q ss_pred             hhHHHHHHHHHhHhCCCc----eEEecchHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC---
Q 024619           55 PTRDALESLLAKLDKADR----ALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~----~i~~~~g~~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---  127 (265)
                      ...+++++++++++|.+.    ++++++|++++.++..++++||+|+++++.|++.  .+...++..|.+++.++.+   
T Consensus        35 ~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~gd~vi~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~  112 (384)
T 3zrp_A           35 EALAYSLKGLRYVMGASKNYQPLIIPGGGTSAMESVTSLLKPNDKILVVSNGVFGD--RWEQIFKRYPVNVKVLRPSPGD  112 (384)
T ss_dssp             HHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHHHGGGGCCTTCEEEEECSSHHHH--HHHHHHTTSSCEEEEECCSTTC
T ss_pred             HHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHHHHHhhcCCCCEEEEecCCcchH--HHHHHHHHcCCcEEEecCCCCC
Confidence            458899999999999874    5666667788885567789999999999998653  2335668889999999865   


Q ss_pred             --CHHHHHhhcCC-CceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcC-CCCCCccEEEeccccccc
Q 024619          128 --DLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR-PLELGADIVMHSATKFIA  203 (265)
Q Consensus       128 --d~~~l~~~~~~-~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~-~~~~~~di~~~s~sK~~~  203 (265)
                        |++++++++.+ ++++|++++++||||.+.|+++|.++|++||+++|+|++|+.+.... ....+.|++++|+||+++
T Consensus       113 ~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~  192 (384)
T 3zrp_A          113 YVKPGEVEEEVRKSEYKLVALTHVETSTGVREPVKDVINKIRKYVELIVVDGVSSVGAEEVKAEEWNVDVYLTASQKALG  192 (384)
T ss_dssp             CCCHHHHHHHHHHSCEEEEEEESEETTTTEECCHHHHHHHHGGGEEEEEEECTTTTTTSCCCTTTTTCSEEEEETTSTTC
T ss_pred             CCCHHHHHHHHHhCCCcEEEEeCCCCCCceECcHHHHHHHHHhcCCEEEEECcccccCccccccccCCCEEEecCccccc
Confidence              89999999986 89999999999999999999999999999999999999999877643 334578999999999997


Q ss_pred             cCCCceeeEEEeechhHHH
Q 024619          204 GHSDVMAGVLAVKGERLAK  222 (265)
Q Consensus       204 g~~g~~~G~v~~~~~~~~~  222 (265)
                      ++.|  +|+++.+++.+..
T Consensus       193 ~~~g--~g~~~~~~~~~~~  209 (384)
T 3zrp_A          193 SAAG--LGLLLLSPKALSI  209 (384)
T ss_dssp             CCSS--EEEEEECHHHHHH
T ss_pred             CCCc--eEEEEECHHHHHH
Confidence            7777  6888888765443

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=99.91  E-value=2.4e-23  Score=182.62  Aligned_cols=202  Identities=19%  Similarity=0.154  Sum_probs=147.2

Q ss_pred             ceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CC-hhHHHHHHHHHhHhCCCceEEecchHHHHHHH-
Q 024619           10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GN-PTRDALESLLAKLDKADRALCFTSGMAALAAV-   86 (265)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~-~~~~~l~~~l~~~~g~~~~i~~~~g~~al~~~-   86 (265)
                      +..+++|. +|+++|..++|.+..+..............|... +. +..+++++.+++++|.++.+++++|++++.++ 
T Consensus        45 g~~~i~~~-~~~~~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~i~~~sG~~a~~~~~  123 (401)
T 2bwn_A           45 KQDITVWC-GNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATL  123 (401)
T ss_dssp             EEEEEECS-CSCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHH
T ss_pred             CCcEEEee-CCCcccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCCCcEEEECCcHHHHHHHH
Confidence            35678998 7888776555544433211111001111112111 33 46889999999999988889999998766533 


Q ss_pred             HHh--cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcC----CCceEEEEecCCCCccccccHHH
Q 024619           87 THL--LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG----PWTKLVWVESPTNPRQQICDIRK  160 (265)
Q Consensus        87 ~~~--~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~----~~~~~i~~~~~~np~G~~~~l~~  160 (265)
                      ..+  ..+||.|+++.|.|+++...+    +..|.+++.++.+|++++++.+.    +++++|++++++||||.+.|+++
T Consensus       124 ~~l~~~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~v~~~d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~  199 (401)
T 2bwn_A          124 STLRVLFPGLIIYSDSLNHASMIEGI----KRNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKE  199 (401)
T ss_dssp             HHHHHHSTTCEEEEETTCCHHHHHHH----HHSCCCEEEECTTCHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHH
T ss_pred             HHHhcCCCCCEEEECchhhHHHHHHH----HHcCCeEEEEcCCCHHHHHHHHHhhccCCceEEEEecCcCCCCCcCCHHH
Confidence            333  358999999999999887544    45788999999888888888775    57899999999999999999999


Q ss_pred             HHHHHHHcCCEEEEeCCcCCCCCcCC-------CC--CCccEEEeccccccccCCCceeeEEEeechhH
Q 024619          161 IAEMAHAHGALLLVDNSIMSPVLSRP-------LE--LGADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       161 i~~~a~~~~~~li~D~~~~~~~~~~~-------~~--~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                      |.++|+++|+++|+||+|+.+.+...       ..  .+.|++++|+||+++. +   +|+++.+++..
T Consensus       200 i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~-~---GG~~~~~~~~~  264 (401)
T 2bwn_A          200 ICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGV-F---GGYIAASARMV  264 (401)
T ss_dssp             HHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCS-C---CEEEEECHHHH
T ss_pred             HHHHHHHcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhccC-C---CCEEecCHHHH
Confidence            99999999999999999996654311       01  1358999999999954 3   38887765433

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=99.91  E-value=1.9e-23  Score=184.61  Aligned_cols=196  Identities=17%  Similarity=0.118  Sum_probs=142.7

Q ss_pred             eEeeccCCC---CCCCCCCC-CeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhC----CC--ceEEecch
Q 024619           12 LLMNFSNEF---DPYGALST-PLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDK----AD--RALCFTSG   79 (265)
Q Consensus        12 ~~~~~~~~~---~~~g~~~~-~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g----~~--~~i~~~~g   79 (265)
                      .+|+|+ ..   |..+..++ |.+..+....  ......+.|++. |.+ +++++++++....+    .+  +++++++|
T Consensus        50 ~~i~l~-~G~y~d~~~~~~~~~~v~~a~~~~--~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~  126 (420)
T 4f4e_A           50 TKVNLG-VGVYTNEDGKIPLLRAVRDAEKAR--VEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGG  126 (420)
T ss_dssp             SCEECC-CCSCCCTTSCCCCCHHHHHHHHHH--HHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHH
T ss_pred             CcEEee-eeeeECCCCCccCcHHHHHHHHHH--hccCCCCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEECCcc
Confidence            579998 54   44444442 2222221111  111234678776 775 58888888877655    33  34455555


Q ss_pred             HHHHH-H--HHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC----C---CHHHHHhhcC---CCceEEEEe
Q 024619           80 MAALA-A--VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT----C---DLDEVASAIG---PWTKLVWVE  146 (265)
Q Consensus        80 ~~al~-~--~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~---d~~~l~~~~~---~~~~~i~~~  146 (265)
                      ++|+. +  +..++++||+|++++|+|+++.    ..++..|.+++.++.    .   |++++++.+.   +++++++++
T Consensus       127 t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~  202 (420)
T 4f4e_A          127 TGALKIGADFLRTLNPKAKVAISDPSWENHR----ALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGYEPGTIVVLHA  202 (420)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEESCCHHHH----HHHHHTTCCEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEEC
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEeCCCcHhHH----HHHHHcCCeEEEeeeeccccCccCHHHHHHHHHhCCCCCEEEEeC
Confidence            69986 4  3466899999999999999987    444567888888876    2   7899999887   678999999


Q ss_pred             cCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCcC----------CCCCCccEEEeccccccccCCCceeeEE
Q 024619          147 SPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR----------PLELGADIVMHSATKFIAGHSDVMAGVL  213 (265)
Q Consensus       147 ~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~~----------~~~~~~di~~~s~sK~~~g~~g~~~G~v  213 (265)
                      +|+||||.+.+   +++|+++|+++|+++|+||+|+...+..          ....+.++++.|+||.+ +++|+|.|++
T Consensus       203 ~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~RiG~~  281 (420)
T 4f4e_A          203 CCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSF-SLYGERVGAL  281 (420)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTT-TCGGGCEEEE
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccC-cCcCCCcEEE
Confidence            99999999965   6799999999999999999997554421          11245789999999999 7788999998


Q ss_pred             Ee
Q 024619          214 AV  215 (265)
Q Consensus       214 ~~  215 (265)
                      +.
T Consensus       282 ~~  283 (420)
T 4f4e_A          282 SI  283 (420)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.91  E-value=2.2e-23  Score=181.01  Aligned_cols=190  Identities=20%  Similarity=0.207  Sum_probs=149.8

Q ss_pred             ChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHh-cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC----
Q 024619           54 NPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (265)
Q Consensus        54 ~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~-~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----  127 (265)
                      .+..+++++.+++++|.+.++++++|++|+. ++..+ +++||+|+++.++|+++...    ++..|.+++.++.+    
T Consensus        34 ~~~~~~l~~~la~~~~~~~~~~~~sGt~al~~al~~~~~~~gd~Vi~~~~~~~~~~~~----~~~~G~~~~~~~~~~~~~  109 (367)
T 3nyt_A           34 GPEVTELEDRLADFVGAKYCISCANGTDALQIVQMALGVGPGDEVITPGFTYVATAET----VALLGAKPVYVDIDPRTY  109 (367)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHH----HHHTTCEEEEECBCTTTC
T ss_pred             ChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhCCCCcCEEEECCCccHHHHHH----HHHcCCEEEEEecCCccC
Confidence            3678999999999999999999999999986 66777 79999999999999998744    45678999998864    


Q ss_pred             --CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCc--cEEEecc--ccc
Q 024619          128 --DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGA--DIVMHSA--TKF  201 (265)
Q Consensus       128 --d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~--di~~~s~--sK~  201 (265)
                        |++++++++.+++++|+   ++||+|...|+++|.++|+++|+++|+|++|+.|........+.  |+++.||  +|+
T Consensus       110 ~~d~~~l~~~i~~~~~~v~---~~~~~G~~~~~~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~di~~~Sf~~~K~  186 (367)
T 3nyt_A          110 NLDPQLLEAAITPRTKAII---PVSLYGQCADFDAINAIASKYGIPVIEDAAQSFGASYKGKRSCNLSTVACTSFFPSAP  186 (367)
T ss_dssp             SBCGGGTGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHTTCCBEEECTTTTTCEETTEETTSSSSEEEEECCTTSS
T ss_pred             CcCHHHHHHhcCcCCcEEE---eeCCccChhhHHHHHHHHHHcCCEEEEECccccCCeECCeeccCCCCEEEEECCCCCc
Confidence              89999999998999888   77899999999999999999999999999999876543322233  9999997  899


Q ss_pred             cccCCCceeeEEEeechhHHHHHHHHHHh------------ccCCCChhHHHHHHhccCchHh
Q 024619          202 IAGHSDVMAGVLAVKGERLAKELYFLQNA------------EGSGLAPFDCWICLRGVKTMAL  252 (265)
Q Consensus       202 ~~g~~g~~~G~v~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~~  252 (265)
                      ++ +.|. +|+++.+++.+.+........            ....+++..++..+..++.+..
T Consensus       187 l~-~~g~-gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~  247 (367)
T 3nyt_A          187 LG-CYGD-GGAIFTNDDELATAIRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLEIFEE  247 (367)
T ss_dssp             SC-CSSC-CEEEEESCHHHHHHHHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHHTHHH
T ss_pred             CC-CcCc-eeEEEeCCHHHHHHHHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHHHHHH
Confidence            94 4344 799988777666655444332            1344666767666666655433

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=99.91  E-value=6.4e-24  Score=186.56  Aligned_cols=187  Identities=20%  Similarity=0.260  Sum_probs=137.1

Q ss_pred             cCCC-CCh-hHHHHHHHHHhHhCC--C-c-eEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEE
Q 024619           49 YTRS-GNP-TRDALESLLAKLDKA--D-R-ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVV  121 (265)
Q Consensus        49 y~~~-g~~-~~~~l~~~l~~~~g~--~-~-~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~  121 (265)
                      |++. |.+ +++++.+++.+.+|.  + + ++++++|++|+. ++..++++||+|+++.|+|+++.    ..++..|.++
T Consensus        71 y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~~gd~vl~~~p~~~~~~----~~~~~~g~~~  146 (407)
T 2zc0_A           71 YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLIDPGDVVITENPSYINTL----LAFEQLGAKI  146 (407)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHH----HHHHTTTCEE
T ss_pred             CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHH----HHHHHcCCEE
Confidence            7665 554 477888888776772  2 3 445555569986 66777899999999999999886    4446678898


Q ss_pred             EeecCC----CHHHHHhhcC----C--CceEE-EEecCCCCccccccHH---HHHHHHHHcCCEEEEeCCcCCCCCc-C-
Q 024619          122 KRVNTC----DLDEVASAIG----P--WTKLV-WVESPTNPRQQICDIR---KIAEMAHAHGALLLVDNSIMSPVLS-R-  185 (265)
Q Consensus       122 ~~~~~~----d~~~l~~~~~----~--~~~~i-~~~~~~np~G~~~~l~---~i~~~a~~~~~~li~D~~~~~~~~~-~-  185 (265)
                      +.++.+    |++++++++.    +  ++++| ++++++||||.+.|.+   +|+++|+++|+++|+||+|+.+.+. . 
T Consensus       147 ~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~  226 (407)
T 2zc0_A          147 EGVPVDNDGMRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGD  226 (407)
T ss_dssp             EEEEEETTEECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSS
T ss_pred             EEcccCCCCCCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCC
Confidence            888763    7899998886    5  78887 5789999999998865   9999999999999999999865442 1 


Q ss_pred             ---CCC---CCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHH
Q 024619          186 ---PLE---LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI  242 (265)
Q Consensus       186 ---~~~---~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (265)
                         ...   .+.++++.|+||++ + +|+++|++++++ .+.+.+...........++..+..
T Consensus       227 ~~~~~~~~~~~~~i~~~s~sK~~-~-~G~r~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  286 (407)
T 2zc0_A          227 IVPLKALDNEGRVIVAGTLSKVL-G-TGFRIGWIIAEG-EILKKVLMQKQPIDFCAPAISQYI  286 (407)
T ss_dssp             CCCGGGGCSSCCEEEEEESTTTT-C-TTSCCEEEECCH-HHHHHHHHHHTTTTSSSCHHHHHH
T ss_pred             CCChhhcCCCCCEEEEccccccc-C-CCcceEEEecCH-HHHHHHHHHHHhhcCCCCHHHHHH
Confidence               111   24678999999999 4 688999999875 444444444433333345444433

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.91  E-value=4.1e-24  Score=189.23  Aligned_cols=194  Identities=17%  Similarity=0.216  Sum_probs=141.9

Q ss_pred             CccCCC-CCh-hHHHHHHHHHhHhC---CC-ceEEecch-HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC
Q 024619           47 YDYTRS-GNP-TRDALESLLAKLDK---AD-RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (265)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~~l~~~~g---~~-~~i~~~~g-~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g  118 (265)
                      ..|++. |.+ +++++++++.+.+|   .+ +.+++++| ++++. ++..++++||+|+++.|+|+++.    ..++..|
T Consensus        79 ~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~----~~~~~~g  154 (425)
T 1vp4_A           79 LQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAI----NAFRQYL  154 (425)
T ss_dssp             TSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHH----HHHHTTT
T ss_pred             cCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHH----HHHHHcC
Confidence            467665 665 58888888877767   33 45555555 58886 67778899999999999999887    4445678


Q ss_pred             eEEEeecCC----CHHHHHhhcCC--------CceEE-EEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCC
Q 024619          119 VVVKRVNTC----DLDEVASAIGP--------WTKLV-WVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPV  182 (265)
Q Consensus       119 ~~~~~~~~~----d~~~l~~~~~~--------~~~~i-~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~  182 (265)
                      .+++.++.+    |++++++++.+        ++++| ++++|+||||.+.+   +++|+++|+++|+++|+||+|+...
T Consensus       155 ~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~  234 (425)
T 1vp4_A          155 ANFVVVPLEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALR  234 (425)
T ss_dssp             CEEEEEEEETTEECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCB
T ss_pred             CEEEEeccCCCCCCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCcccc
Confidence            888888763    78999888765        78888 57999999999975   6789999999999999999998654


Q ss_pred             Cc-C---CC----CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhcc
Q 024619          183 LS-R---PL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV  247 (265)
Q Consensus       183 ~~-~---~~----~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  247 (265)
                      +. .   ..    ..+.++++.|+||++ + +|+|+|+++++++. .+.+...........++..++.+.+.|
T Consensus       235 ~~g~~~~~~~~~~~~~~~i~~~s~sK~~-~-~G~r~G~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~a~~~~l  304 (425)
T 1vp4_A          235 YEGETVDPIFKIGGPERVVLLNTFSKVL-A-PGLRIGMVAGSKEF-IRKIVQAKQSADLCSPAITHRLAARYL  304 (425)
T ss_dssp             CSSCCCCCHHHHHCTTTEEEEEESTTTT-C-GGGCEEEEECCHHH-HHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred             CCCCCCcCHHHhCCCCCEEEEecccccc-c-cccceEEEeeCHHH-HHHHHHHhhhhcCCCCHHHHHHHHHHH
Confidence            31 1   11    225679999999999 5 78999999988644 444444443333344555554443333

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=99.91  E-value=2.4e-23  Score=183.71  Aligned_cols=198  Identities=15%  Similarity=0.165  Sum_probs=142.1

Q ss_pred             CCccCCC-CCh-hHHHHHHHHHhHhCCC---ceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCe
Q 024619           46 PYDYTRS-GNP-TRDALESLLAKLDKAD---RALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV  119 (265)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~  119 (265)
                      .+.|++. |.+ +++++++++....+.+   .++++++|++|+. ++..++++||+|++++|+|+.+.    ..++..|.
T Consensus        73 ~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~----~~~~~~g~  148 (418)
T 3rq1_A           73 HVGYAPIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIHHLIHNYTEPGDEVLTADWYWGAYR----VICSDTGR  148 (418)
T ss_dssp             HHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHHHHHHSCTTCEEEEESSCCTHHH----HHHHHTTC
T ss_pred             cCCCCCCCChHHHHHHHHHHHhcccCccccccEEECCchHHHHHHHHHHhcCCCCEEEECCCCchhHH----HHHHHcCC
Confidence            4568777 776 4999999998888777   6666666679986 77788999999999999999987    44566889


Q ss_pred             EEEeecCC------CHHHHHhhcCC----Cce-EEEEecC-CCCccccccH---HHHHHHHH------HcCCEEEEeCCc
Q 024619          120 VVKRVNTC------DLDEVASAIGP----WTK-LVWVESP-TNPRQQICDI---RKIAEMAH------AHGALLLVDNSI  178 (265)
Q Consensus       120 ~~~~~~~~------d~~~l~~~~~~----~~~-~i~~~~~-~np~G~~~~l---~~i~~~a~------~~~~~li~D~~~  178 (265)
                      +++.++..      |++++++++.+    +++ ++++++| +||||.+.+.   ++|+++|+      ++|+++|+||+|
T Consensus       149 ~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y  228 (418)
T 3rq1_A          149 TLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAY  228 (418)
T ss_dssp             EEEEECSBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTT
T ss_pred             EEEEEeeeCCCCCcCHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccc
Confidence            99988852      78999888864    566 8889999 9999999874   56666676      899999999999


Q ss_pred             CCCCCc---------CCCCCCc---cEEEeccccccccCCCceeeEEEe--echhHHHHHHHHHHh----ccCCCChhHH
Q 024619          179 MSPVLS---------RPLELGA---DIVMHSATKFIAGHSDVMAGVLAV--KGERLAKELYFLQNA----EGSGLAPFDC  240 (265)
Q Consensus       179 ~~~~~~---------~~~~~~~---di~~~s~sK~~~g~~g~~~G~v~~--~~~~~~~~~~~~~~~----~~~~~~~~~~  240 (265)
                      ......         .......   .++++|+||.+ |.+|+|+|++++  +++.+.+.+......    .....+...+
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~-~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (418)
T 3rq1_A          229 LDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGF-TMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAM  307 (418)
T ss_dssp             GGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTT-TCCSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHH
T ss_pred             ccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCC-cCcCCcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHH
Confidence            633221         0111122   38889999999 677899999988  233444444333322    1234555555


Q ss_pred             HHHHhccC
Q 024619          241 WICLRGVK  248 (265)
Q Consensus       241 ~~~~~~l~  248 (265)
                      ..+...++
T Consensus       308 ~a~~~~l~  315 (418)
T 3rq1_A          308 RTMANIVA  315 (418)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhC
Confidence            44444443

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=99.91  E-value=2.8e-24  Score=186.70  Aligned_cols=169  Identities=16%  Similarity=0.216  Sum_probs=131.1

Q ss_pred             CccCCC-CChhHHHHHHHHHhHhCC--C-ceEEecch-HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeE
Q 024619           47 YDYTRS-GNPTRDALESLLAKLDKA--D-RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV  120 (265)
Q Consensus        47 ~~y~~~-g~~~~~~l~~~l~~~~g~--~-~~i~~~~g-~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~  120 (265)
                      ..|+.. +..+++++++++.+.+|.  + +.+++++| ++++. ++..++++||+|++++|+|+++..    .++..|.+
T Consensus        64 ~~y~~~~~~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~~~l~~~gd~Vl~~~~~y~~~~~----~~~~~g~~  139 (369)
T 3cq5_A           64 NRYPERDAVELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAFGGPGRTALGFQPSYSMHPI----LAKGTHTE  139 (369)
T ss_dssp             TSCCCTTCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCSTTCEEEEEESSCTHHHH----HHHHTTCE
T ss_pred             ccCCCccHHHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHHHHhcCCCCEEEEcCCChHHHHH----HHHHcCCE
Confidence            456554 323467777777666543  2 45566665 58885 677788999999999999998874    44557888


Q ss_pred             EEeecCC-----CHHHHHhhcCC-CceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCC----CC
Q 024619          121 VKRVNTC-----DLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPL----EL  189 (265)
Q Consensus       121 ~~~~~~~-----d~~~l~~~~~~-~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~----~~  189 (265)
                      ++.++.+     |++++++++.+ ++++|++++|+||||.+.|++++.++++.+++++|+||+|+.+... ...    ..
T Consensus       140 ~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~  219 (369)
T 3cq5_A          140 FIAVSRGADFRIDMDVALEEIRAKQPDIVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKY  219 (369)
T ss_dssp             EEEEECCTTSSCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTC
T ss_pred             EEEecCCcCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhC
Confidence            8888743     78999998876 8999999999999999999999999999999999999999865532 111    23


Q ss_pred             C-ccEEEeccccccccCCCceeeEEEeechhH
Q 024619          190 G-ADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       190 ~-~di~~~s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                      + .++++.|+||++ +.+|+++|+++++++.+
T Consensus       220 ~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~~~  250 (369)
T 3cq5_A          220 PTKLVVSRTMSKAF-DFAGGRLGYFVANPAFI  250 (369)
T ss_dssp             TTTEEEEEESSSTT-SCGGGCCEEEEECTHHH
T ss_pred             CCCEEEEEechHhc-CCcccceEEEEeCHHHH
Confidence            4 679999999999 55689999999886543

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=99.91  E-value=3.9e-23  Score=182.16  Aligned_cols=200  Identities=18%  Similarity=0.205  Sum_probs=142.6

Q ss_pred             eeEeeccCCCCC---CCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhH------h----CCCceEE
Q 024619           11 TLLMNFSNEFDP---YGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKL------D----KADRALC   75 (265)
Q Consensus        11 ~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~------~----g~~~~i~   75 (265)
                      ..+++|+ .+++   ....++|.+........  .......|++. |.+ +++++++++.+.      .    ..+.+++
T Consensus        33 ~~~i~l~-~g~p~~~~~~~~~~~v~~a~~~~~--~~~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~  109 (416)
T 1bw0_A           33 KPIIKLS-VGDPTLDKNLLTSAAQIKKLKEAI--DSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVL  109 (416)
T ss_dssp             SCCEECC-CCCTTTTSCSCCCHHHHHHHHHHH--HTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEE
T ss_pred             CCeEEec-CcCCCcccCCCCCHHHHHHHHHHh--hCCccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEEE
Confidence            4688998 5443   23334444433321111  11123467665 554 477777777632      1    2334555


Q ss_pred             ecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC-------CCHHHHHhhcCCCceEEEEec
Q 024619           76 FTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-------CDLDEVASAIGPWTKLVWVES  147 (265)
Q Consensus        76 ~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~~~~~~~~i~~~~  147 (265)
                      +++|++++. ++..++++||+|+++.|+|+++..    .++..|.+++.++.       .|++++++++.+++++|++++
T Consensus       110 ~~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~----~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~  185 (416)
T 1bw0_A          110 CSGGSHGILMAITAICDAGDYALVPQPGFPHYET----VCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTN  185 (416)
T ss_dssp             ESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHH----HHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTEEEEEEES
T ss_pred             eCChHHHHHHHHHHhCCCCCEEEEcCCCcHhHHH----HHHHcCcEEEEeecCcccCCCCCHHHHHHHhccCCeEEEEeC
Confidence            556668986 677788999999999999999874    44567888888764       378999999988899999999


Q ss_pred             CCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc---------CCCC---CCccEEEeccccccccCCCceeeE
Q 024619          148 PTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS---------RPLE---LGADIVMHSATKFIAGHSDVMAGV  212 (265)
Q Consensus       148 ~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~---------~~~~---~~~di~~~s~sK~~~g~~g~~~G~  212 (265)
                      |+||||.+.+   +++|+++|+++|+++|+||+|+...+.         ....   .+.+++++|+||++ +.+|+|+|+
T Consensus       186 p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~Glr~G~  264 (416)
T 1bw0_A          186 PSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNL-VVPGWRLGW  264 (416)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTT-SCGGGCCEE
T ss_pred             CCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecchhhC-CCCCceEEE
Confidence            9999999988   899999999999999999999863221         1111   12468899999998 557899999


Q ss_pred             EEeech
Q 024619          213 LAVKGE  218 (265)
Q Consensus       213 v~~~~~  218 (265)
                      ++++++
T Consensus       265 ~~~~~~  270 (416)
T 1bw0_A          265 LLYVDP  270 (416)
T ss_dssp             EEEECT
T ss_pred             EEeeCc
Confidence            998875

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=99.90  E-value=1e-22  Score=180.43  Aligned_cols=225  Identities=13%  Similarity=0.091  Sum_probs=156.5

Q ss_pred             eEeeccCCCCC--CCCCCCCee---eccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHh-CCC--c---eEEecc
Q 024619           12 LLMNFSNEFDP--YGALSTPLY---QTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLD-KAD--R---ALCFTS   78 (265)
Q Consensus        12 ~~~~~~~~~~~--~g~~~~~~~---~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~-g~~--~---~i~~~~   78 (265)
                      .+++|+ .+++  +|.  +|.+   ++..   ..........|++. |.+ +++++++++.+.. +.+  +   ++++++
T Consensus        48 ~~i~l~-~g~~~~~~~--~~~~~~~~a~~---~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g  121 (430)
T 2x5f_A           48 TTYNAT-IGMATNKDG--KMFASSLDAMF---NDLTPDEIFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNA  121 (430)
T ss_dssp             CSEECC-CSSCEETTE--ECCCHHHHTTB---SSCCGGGTSSCCCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEEESH
T ss_pred             CcEEee-eeeccCCCC--chhhHHHHHHH---HhcCcccccccCCCCCCHHHHHHHHHHHhccCcccCCCccceEEEcCC
Confidence            578998 5555  453  3333   2221   11111134567766 664 4777777765543 443  4   455555


Q ss_pred             hHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCC-CCeEEEeecCC------CHHHHHhhcCC---CceEEEEec
Q 024619           79 GMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPK-TGVVVKRVNTC------DLDEVASAIGP---WTKLVWVES  147 (265)
Q Consensus        79 g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~------d~~~l~~~~~~---~~~~i~~~~  147 (265)
                      |++|+. ++..++++||+|++++|+|+++.    ..++. .|.+++.++.+      |++++++++.+   ++++|++++
T Consensus       122 ~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~----~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~  197 (430)
T 2x5f_A          122 LTHGLSLVGDLFVNQDDTILLPEHNWGNYK----LVFNTRNGANLQTYPIFDKDGHYTTDSLVEALQSYNKDKVIMILNY  197 (430)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEESSCCTHHH----HHHTTTTCCEEEEECCBCTTSCBCSHHHHHHHHHCCSSEEEEEECS
T ss_pred             chHHHHHHHHHHhCCCCEEEEcCCcCccHH----HHHHHhcCCeEEEEeccCccCCcCHHHHHHHHHhcCCCCEEEEEcC
Confidence            569986 67778899999999999999986    44566 88999888752      68889888865   789999999


Q ss_pred             CCCCcccccc---HHHHHHHHHH-----cCCEEEEeCCcCCCCCc----CC-C----C-CCc---cEEEeccccccccCC
Q 024619          148 PTNPRQQICD---IRKIAEMAHA-----HGALLLVDNSIMSPVLS----RP-L----E-LGA---DIVMHSATKFIAGHS  206 (265)
Q Consensus       148 ~~np~G~~~~---l~~i~~~a~~-----~~~~li~D~~~~~~~~~----~~-~----~-~~~---di~~~s~sK~~~g~~  206 (265)
                      |+||||.+.+   +++|+++|++     +|+++|+||+|+...+.    .+ .    . .+.   ++++.|+||++ |++
T Consensus       198 p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~  276 (430)
T 2x5f_A          198 PNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEF-FAW  276 (430)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHT-TCG
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCC-CCC
Confidence            9999999987   8999999999     99999999999864432    11 1    1 345   78999999999 666


Q ss_pred             CceeeEEEe---echhHHHHHHHHHHh----ccCCCChhHHHHHHhccC
Q 024619          207 DVMAGVLAV---KGERLAKELYFLQNA----EGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       207 g~~~G~v~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~  248 (265)
                      |+|+|++++   +++ +.+.+......    .....++..++.+.+.|+
T Consensus       277 G~riG~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~  324 (430)
T 2x5f_A          277 GFRVGFMTFGTSDQT-TKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLK  324 (430)
T ss_dssp             GGCCEEEEEBCCCHH-HHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHH
T ss_pred             CCCeEEEEEecCCHH-HHHHHHHHHhhhhhcccCCCChHHHHHHHHHHc
Confidence            899999998   554 44444443333    344566666555555554

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=99.90  E-value=1.8e-23  Score=182.35  Aligned_cols=184  Identities=18%  Similarity=0.206  Sum_probs=141.2

Q ss_pred             hHHHHHHHHHhHhCC---CceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHH
Q 024619           56 TRDALESLLAKLDKA---DRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDE  131 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~---~~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~  131 (265)
                      ..+++++.+++++|.   ++++++++|++++. ++..+  +||+|+++.|+|+++...+. .++..|++++.+  .|+++
T Consensus        59 ~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~~~--~gd~Vl~~~~~y~~~~~~~~-~~~~~g~~~~~v--~d~~~  133 (374)
T 2aeu_A           59 FAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL--KPKKVIHYLPELPGHPSIER-SCKIVNAKYFES--DKVGE  133 (374)
T ss_dssp             HHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH--CCSEEEEECSSSSCCTHHHH-HHHHTTCEEEEE--SCHHH
T ss_pred             HHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHHhC--CCCEEEEecCCCCccHHHHH-HHHHcCcEEEEe--CCHHH
Confidence            356788888888998   56788888889986 55555  99999999999988654443 556678999888  68999


Q ss_pred             HHhhcCCCceE-EEEecCCCCcc-ccccHHHHHHHHHHcCCEEEEeCCcCCCCC---cC--CCCCCccEEEecccccccc
Q 024619          132 VASAIGPWTKL-VWVESPTNPRQ-QICDIRKIAEMAHAHGALLLVDNSIMSPVL---SR--PLELGADIVMHSATKFIAG  204 (265)
Q Consensus       132 l~~~~~~~~~~-i~~~~~~np~G-~~~~l~~i~~~a~~~~~~li~D~~~~~~~~---~~--~~~~~~di~~~s~sK~~~g  204 (265)
                      ++++ .+++++ |++++|+|||| ...++++|.++|+++|+++|+||+|+.+..   ..  +...+.|++++|+||+++|
T Consensus       134 l~~~-~~~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~g  212 (374)
T 2aeu_A          134 ILNK-IDKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEG  212 (374)
T ss_dssp             HHTT-CCTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSS
T ss_pred             HHhc-CCCccEEEEEccCCCCCCCCcccHHHHHHHHHHcCCEEEEECCcccccccccccCCccccCCcEEEecCcccccC
Confidence            9998 778999 99999999999 888999999999999999999999876531   11  3345789999999999855


Q ss_pred             CCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccCc
Q 024619          205 HSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT  249 (265)
Q Consensus       205 ~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  249 (265)
                         .++|+++++++.+ +.+.......+...++..++.+...++.
T Consensus       213 ---~~~G~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~a~~~al~~  253 (374)
T 2aeu_A          213 ---PRGGLLAGKKELV-DKIYIEGTKFGLEAQPPLLAGIYRALKN  253 (374)
T ss_dssp             ---CSCEEEEEEHHHH-HHHHHHHHTTTCBCCHHHHHHHHHHHHH
T ss_pred             ---cceEEEEECHHHH-HHHHHhhccccCCCCHHHHHHHHHHHHH
Confidence               3579998877544 4444444444455666666655555543

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=99.90  E-value=3.2e-23  Score=187.25  Aligned_cols=179  Identities=17%  Similarity=0.189  Sum_probs=136.3

Q ss_pred             CCCccCCC-CCh-hHHHHHHHHHhHhCC----CceEEecchHHHHH-HHHHhc-CCCCEEEEcCCCCCChHHHHHhhcCC
Q 024619           45 GPYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGMAALA-AVTHLL-GTGEEIVAGDDLYGGTDRLLSRVTPK  116 (265)
Q Consensus        45 ~~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~g~~al~-~~~~~~-~~g~~viv~~~~~~~~~~~~~~~~~~  116 (265)
                      ....|+.. |.+ +++++++++.+.+|.    ++++++++|++++. ++..++ ++||.|+++.|+|+.+..    .++.
T Consensus       126 ~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~y~~~~~----~~~~  201 (500)
T 3tcm_A          126 ATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSA----SIAL  201 (500)
T ss_dssp             CSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCSTTEEEEEEESCCTHHHH----HHHH
T ss_pred             cCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCEEEEeCCCcHhHHH----HHHH
Confidence            45678877 775 599999999888763    35666666679986 666677 799999999999999874    4456


Q ss_pred             CCeEEEeecC-------CCHHHHHhhcCC------CceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCC
Q 024619          117 TGVVVKRVNT-------CDLDEVASAIGP------WTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMS  180 (265)
Q Consensus       117 ~g~~~~~~~~-------~d~~~l~~~~~~------~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~  180 (265)
                      .|.+++.+++       .|++++++++.+      ++++|++++|+||||.+.+   +++|+++|+++|+++|+||+|+.
T Consensus       202 ~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~  281 (500)
T 3tcm_A          202 HGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQE  281 (500)
T ss_dssp             TTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTT
T ss_pred             cCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccc
Confidence            7888888873       378999998875      7899999999999999965   67888889999999999999987


Q ss_pred             CCCcC-----C-----------CCCCccEEEeccccccccCCCceeeEEEee--chhHHHHHHHH
Q 024619          181 PVLSR-----P-----------LELGADIVMHSATKFIAGHSDVMAGVLAVK--GERLAKELYFL  227 (265)
Q Consensus       181 ~~~~~-----~-----------~~~~~di~~~s~sK~~~g~~g~~~G~v~~~--~~~~~~~~~~~  227 (265)
                      ..+..     .           ......+++.|+||.+.|.+|+|+|++++.  ++.+.+.+...
T Consensus       282 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~  346 (500)
T 3tcm_A          282 NIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQIYKI  346 (500)
T ss_dssp             CBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHHHHHHHH
T ss_pred             cccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHHHHHHHH
Confidence            55421     1           011124888999999867788999999872  33444444333

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.90  E-value=5.3e-23  Score=178.84  Aligned_cols=165  Identities=20%  Similarity=0.220  Sum_probs=136.4

Q ss_pred             hhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHh-cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-----
Q 024619           55 PTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~-~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----  127 (265)
                      +..+++++.+++++|.++++++++|++|+. ++..+ +++||+|+++.++|+++...    ++..|.+++.++.+     
T Consensus        36 ~~~~~l~~~la~~~~~~~~i~~~sgt~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~  111 (373)
T 3frk_A           36 DEDKKFEQEFADYCNVNYCIGCGNGLDALHLILKGYDIGFGDEVIVPSNTFIATALA----VSYTGAKPIFVEPDIRTYN  111 (373)
T ss_dssp             HHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHTTCCTTCEEEEETTSCTHHHHH----HHHHSCEEEEECEETTTTE
T ss_pred             chHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHH----HHHcCCEEEEEeccccccC
Confidence            678999999999999999999999999986 67777 89999999999999998744    45568899888865     


Q ss_pred             -CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCC--ccEEEeccc--ccc
Q 024619          128 -DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELG--ADIVMHSAT--KFI  202 (265)
Q Consensus       128 -d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~--~di~~~s~s--K~~  202 (265)
                       |++++++++.+++++|+   ++||+|.+.|+++|.++|+++|+++|+|++|+.|........+  .|+++.||+  |++
T Consensus       112 ~d~~~l~~~l~~~~~~v~---~~n~~G~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~~d~~~~S~~~~K~l  188 (373)
T 3frk_A          112 IDPSLIESAITEKTKAII---AVHLYGQPADMDEIKRIAKKYNLKLIEDAAQAHGSLYKGMKVGSLGDAAGFSFYPAKNL  188 (373)
T ss_dssp             ECGGGTGGGCCTTEEEEE---EECCTTCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSS
T ss_pred             cCHHHHHHhcCCCCeEEE---EECCCcCcccHHHHHHHHHHcCCEEEEECCcccCCEECCEeccccccEEEEeCcCCCcc
Confidence             89999999998999888   6779999999999999999999999999999987654333333  689999977  999


Q ss_pred             ccCCCceeeEEEeechhHHHHHHHHH
Q 024619          203 AGHSDVMAGVLAVKGERLAKELYFLQ  228 (265)
Q Consensus       203 ~g~~g~~~G~v~~~~~~~~~~~~~~~  228 (265)
                      ++ .|. +|+++.++..+.+......
T Consensus       189 ~~-~g~-gg~~~~~~~~~~~~~~~~~  212 (373)
T 3frk_A          189 GS-LGD-GGAVVTNDKDLAEKIKALS  212 (373)
T ss_dssp             CC-SSS-CEEEEESCHHHHHHHHHHH
T ss_pred             Cc-cce-eEEEEeCCHHHHHHHHHHH
Confidence            54 232 7899888776655555444

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=99.90  E-value=4.7e-22  Score=175.99  Aligned_cols=197  Identities=15%  Similarity=0.183  Sum_probs=142.9

Q ss_pred             CccCCC-CCh-hHHHHHHHHHhHhC----C--CceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCC
Q 024619           47 YDYTRS-GNP-TRDALESLLAKLDK----A--DRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (265)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~~l~~~~g----~--~~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~  117 (265)
                      ..|++. |.+ +++++++++.+.+|    .  +.+++++++++++. ++..++++||+|++++|+|+++..   ......
T Consensus        77 ~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~---~~~~~~  153 (428)
T 1iay_A           77 ANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNR---DLRWRT  153 (428)
T ss_dssp             HHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHH---HTTTTT
T ss_pred             cCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHhCCCCCeEEEccCCCcchHH---HHHHhc
Confidence            457665 554 47778888777655    2  34445545558886 677788999999999999999862   234567


Q ss_pred             CeEEEeecCC-------CHHHHHhhcC------CCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCC
Q 024619          118 GVVVKRVNTC-------DLDEVASAIG------PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSP  181 (265)
Q Consensus       118 g~~~~~~~~~-------d~~~l~~~~~------~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~  181 (265)
                      |.+++.++.+       |++++++++.      +++++|++++|+||||.+.+   +++|+++|+++|+++|+||+|+..
T Consensus       154 g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~  233 (428)
T 1iay_A          154 GVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAAT  233 (428)
T ss_dssp             CCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGG
T ss_pred             CCEEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEecccccc
Confidence            8999988753       7888988875      36899999999999999988   899999999999999999999864


Q ss_pred             CCc-----CCC--CCC-------cc--EEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHh
Q 024619          182 VLS-----RPL--ELG-------AD--IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR  245 (265)
Q Consensus       182 ~~~-----~~~--~~~-------~d--i~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (265)
                      .+.     ...  ..+       .|  +++.|+||++ |.+|+|.|+++++++.+.+.+.....  ....++..+..+..
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~-g~~Glr~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~  310 (428)
T 1iay_A          234 VFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDM-GLPGFRVGIIYSFNDDVVNCARKMSS--FGLVSTQTQYFLAA  310 (428)
T ss_dssp             CCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTS-SCGGGCEEEEEESCHHHHHHHHHHHT--TSCCCHHHHHHHHH
T ss_pred             ccCCCCccCHHHhccccccccCCCCcEEEEecchhhc-CCCCceEEEEEeCCHHHHHHHHHHHh--cccCCHHHHHHHHH
Confidence            321     111  111       45  8999999999 66789999999865555554443322  23455555555555


Q ss_pred             ccCc
Q 024619          246 GVKT  249 (265)
Q Consensus       246 ~l~~  249 (265)
                      .++.
T Consensus       311 ~l~~  314 (428)
T 1iay_A          311 MLSD  314 (428)
T ss_dssp             HTTC
T ss_pred             HhcC
Confidence            5554

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.90  E-value=1e-22  Score=176.86  Aligned_cols=165  Identities=21%  Similarity=0.260  Sum_probs=136.8

Q ss_pred             ChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHh-cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC----
Q 024619           54 NPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (265)
Q Consensus        54 ~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~-~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----  127 (265)
                      .+...++++.+++++|.++.+++++|++|+. ++..+ +++||+|+++.|+|+++..    .++..|.+++.++.+    
T Consensus        37 ~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~~~~~~~~~gd~v~~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~  112 (374)
T 3uwc_A           37 GAELEKFEKRFAALHNAPHAIGVGTGTDALAMSFKMLNIGAGDEVITCANTFIASVG----AIVQAGATPVLVDSENGYV  112 (374)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHH----HHHHTTCEEEEECBCTTSS
T ss_pred             ChhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHHHH----HHHHcCCEEEEEecCCCCC
Confidence            3678999999999999999999999999986 67777 8999999999999998874    446678999999876    


Q ss_pred             -CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCC--CccEEEeccc--ccc
Q 024619          128 -DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLEL--GADIVMHSAT--KFI  202 (265)
Q Consensus       128 -d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~--~~di~~~s~s--K~~  202 (265)
                       |++++++++.+++++|+   ++||||.+.|+++|.++|+++|+++|+|++|+.+........  ..|+++.|+|  |++
T Consensus       113 ~d~~~l~~~~~~~~~~v~---~~n~~G~~~~~~~i~~~~~~~~~~li~D~~~~~g~~~~~~~~~~~~d~~~~s~~~~K~l  189 (374)
T 3uwc_A          113 IDPEKIEAAITDKTKAIM---PVHYTGNIADMPALAKIAKKHNLHIVEDACQTILGRINDKFVGSWGQFACFSLHPLKNL  189 (374)
T ss_dssp             BCGGGTGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECSSSSSS
T ss_pred             cCHHHHHHhCCCCceEEE---EeCCcCCcCCHHHHHHHHHHcCCEEEEeCCCccCceeCCeeccccccEEEEeCCCCCcC
Confidence             89999999988888888   889999999999999999999999999999998764322222  2699999977  999


Q ss_pred             ccCCCceeeEEEeechhHHHHHHHH
Q 024619          203 AGHSDVMAGVLAVKGERLAKELYFL  227 (265)
Q Consensus       203 ~g~~g~~~G~v~~~~~~~~~~~~~~  227 (265)
                      + +.|. +|+++.++..+.+.....
T Consensus       190 ~-~~g~-~g~~~~~~~~~~~~~~~~  212 (374)
T 3uwc_A          190 N-VWSD-AGVIITHSDEYAEKLRLY  212 (374)
T ss_dssp             C-CSSC-CEEEEESCHHHHHHHHHH
T ss_pred             C-ccce-eEEEEeCCHHHHHHHHHH
Confidence            5 4333 788888876665555444

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=99.90  E-value=1e-23  Score=187.85  Aligned_cols=231  Identities=14%  Similarity=0.146  Sum_probs=148.4

Q ss_pred             ceeEeeccCCCCCCCCCCCCeeecc-ccccCCCC-CCCCCccCCC-CCh-hHHHHHHHHHhHh--CCC-ceEEecch-HH
Q 024619           10 STLLMNFSNEFDPYGALSTPLYQTA-TFKQPSAT-ENGPYDYTRS-GNP-TRDALESLLAKLD--KAD-RALCFTSG-MA   81 (265)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~-~~~~~~y~~~-g~~-~~~~l~~~l~~~~--g~~-~~i~~~~g-~~   81 (265)
                      +..+|+|+ +++ .+...+|.+..+ ........ ....+.|++. |.+ +++++++++.  +  +.+ +.+++++| ++
T Consensus        68 ~~~~i~l~-~g~-~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~--~g~~~~~~~i~~t~G~~~  143 (449)
T 3qgu_A           68 DAKIISLG-IGD-TTEPLPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFY--GHAGRAADEIFISDGSKC  143 (449)
T ss_dssp             TCCCEECS-SCC-CCCCCCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHH--TTTTCCGGGEEEESCHHH
T ss_pred             CCCEEEee-CCC-CCCCCCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHH--cCCCCCHHHEEEccCHHH
Confidence            34689999 554 333344433332 21111110 1234567665 554 3555555554  2  333 45555555 58


Q ss_pred             HHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeE----------EEeecCCCHHHHHhhcC--CCceEEEEecCC
Q 024619           82 ALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV----------VKRVNTCDLDEVASAIG--PWTKLVWVESPT  149 (265)
Q Consensus        82 al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~----------~~~~~~~d~~~l~~~~~--~~~~~i~~~~~~  149 (265)
                      ++.++..++++||+|++++|+|+++...+    +..|.+          ++.++.++.+.+...+.  +++++|++++|+
T Consensus       144 al~~~~~l~~~gd~Vl~~~p~~~~~~~~~----~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~p~  219 (449)
T 3qgu_A          144 DIARIQMMFGSKPTVAVQDPSYPVYVDTS----VMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKAKRTDIIFFCSPN  219 (449)
T ss_dssp             HHHHHHHHHCSSSCEEEEESCCTHHHHHH----HHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGCCCCSEEEEESSC
T ss_pred             HHHHHHHHhCCCCEEEEcCCCChhHHHHH----HHcCCcccccccccceeEEEecccccCCcCChhHcCCCCEEEEeCCC
Confidence            88755888999999999999999997554    344555          67777654323322222  578999999999


Q ss_pred             CCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc-----CCC----CCCccEEEeccccccccCCCceeeEEEeec
Q 024619          150 NPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPL----ELGADIVMHSATKFIAGHSDVMAGVLAVKG  217 (265)
Q Consensus       150 np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~~----~~~~di~~~s~sK~~~g~~g~~~G~v~~~~  217 (265)
                      ||||.+.+   +++|+++|+++|+++|+||+|+.....     ...    ..+.++++.|+||++ |.+|+|+|++++++
T Consensus       220 NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~  298 (449)
T 3qgu_A          220 NPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYA-GFTGVRLGWTVVPK  298 (449)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGG-TCTTCCCEEEECCT
T ss_pred             CCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhc-CCccceeEEEecCH
Confidence            99999975   788999999999999999999864332     111    135679999999999 67789999999887


Q ss_pred             hhHHH-------HHHHHHHhccCCCChhHHHHHHhccCc
Q 024619          218 ERLAK-------ELYFLQNAEGSGLAPFDCWICLRGVKT  249 (265)
Q Consensus       218 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~  249 (265)
                      +.+..       .............++..+..+...++.
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~  337 (449)
T 3qgu_A          299 ALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQP  337 (449)
T ss_dssp             TCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSH
T ss_pred             HHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhh
Confidence            65431       333333444445566655555555543

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=99.90  E-value=1.5e-22  Score=182.70  Aligned_cols=180  Identities=18%  Similarity=0.208  Sum_probs=133.8

Q ss_pred             CCccCCC-CCh-hHHHHHHHHHhHhC-C----CceEEecchHHHHH-HHHHhcCCCC----EEEEcCCCCCChHHHHHhh
Q 024619           46 PYDYTRS-GNP-TRDALESLLAKLDK-A----DRALCFTSGMAALA-AVTHLLGTGE----EIVAGDDLYGGTDRLLSRV  113 (265)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g-~----~~~i~~~~g~~al~-~~~~~~~~g~----~viv~~~~~~~~~~~~~~~  113 (265)
                      ...|+.. |.+ +++++++++.+..| .    +++++++++++++. ++..++++||    .|+++.|.|+.+..    .
T Consensus       122 ~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~~~d~Vlv~~p~y~~~~~----~  197 (498)
T 3ihj_A          122 LGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSA----V  197 (498)
T ss_dssp             ------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCCCCGGGSEEEEEEESCCTHHHH----H
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCCCCEEEEeCCCchhHHH----H
Confidence            4568777 875 69999999998875 3    34555555568886 6677888875    99999999999874    4


Q ss_pred             cCCCCeEEEeecCC-------CHHHHHhhcCC-----CceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCc
Q 024619          114 TPKTGVVVKRVNTC-------DLDEVASAIGP-----WTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSI  178 (265)
Q Consensus       114 ~~~~g~~~~~~~~~-------d~~~l~~~~~~-----~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~  178 (265)
                      ++..|.+++.++++       |++++++++.+     ++++|++++|+||||.+.+   +++|+++|+++|+++|+||+|
T Consensus       198 ~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y  277 (498)
T 3ihj_A          198 ISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVY  277 (498)
T ss_dssp             HHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTT
T ss_pred             HHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCc
Confidence            45678888888765       88999998865     5899999999999999965   678999999999999999999


Q ss_pred             CCCCCcCC---C---C-----------CCccEEEeccccccccCCCceeeEEEe--echhHHHHHHHHHH
Q 024619          179 MSPVLSRP---L---E-----------LGADIVMHSATKFIAGHSDVMAGVLAV--KGERLAKELYFLQN  229 (265)
Q Consensus       179 ~~~~~~~~---~---~-----------~~~di~~~s~sK~~~g~~g~~~G~v~~--~~~~~~~~~~~~~~  229 (265)
                      +...+...   .   .           ....++++|+||.+.|.+|+|+||++.  .+..+.+.+.....
T Consensus       278 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~~~~  347 (498)
T 3ihj_A          278 QDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLS  347 (498)
T ss_dssp             TTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHHHHH
T ss_pred             cccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHHHHHHHh
Confidence            87655311   0   0           012478999999997778999999984  44455554444443

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=99.90  E-value=1.2e-22  Score=177.73  Aligned_cols=198  Identities=15%  Similarity=0.100  Sum_probs=142.4

Q ss_pred             eeEeeccCCC---CCCCCCCC-CeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhC----CC--ceEEecc
Q 024619           11 TLLMNFSNEF---DPYGALST-PLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDK----AD--RALCFTS   78 (265)
Q Consensus        11 ~~~~~~~~~~---~~~g~~~~-~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g----~~--~~i~~~~   78 (265)
                      ..+++|+ ..   |+.+..+. |.+..+.... .......+.|++. |.+ +++++++++....+    .+  .++++++
T Consensus        26 ~~~i~l~-~g~y~d~~~~~~~~~~v~~a~~~~-~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g  103 (397)
T 3fsl_A           26 SDKVNLS-IGLYYNEDGIIPQLQAVAEAEARL-NAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLG  103 (397)
T ss_dssp             SCCEECS-SCCCCCTTSCCCCCHHHHHHHHHH-HHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESH
T ss_pred             CCeEEEe-eeEEECCCCCccCcHHHHHHHHhh-ccCccccccCCCCCchHHHHHHHHHHHhcCCcccccccceEEEEcCC
Confidence            3589999 55   44444432 2222221110 1112234577775 765 58888888877655    33  3445555


Q ss_pred             hHHHHH-H--HHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC----C---CHHHHHhhcC---CCceEEEE
Q 024619           79 GMAALA-A--VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT----C---DLDEVASAIG---PWTKLVWV  145 (265)
Q Consensus        79 g~~al~-~--~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~---d~~~l~~~~~---~~~~~i~~  145 (265)
                      |++++. +  +..++++||+|+++.|+|+++.    ..++..|.+++.++.    .   |++++++++.   ++++++++
T Consensus       104 ~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~  179 (397)
T 3fsl_A          104 GSGALKVGADFLKRYFPESGVWVSDPTWENHV----AIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQAGSIVLLH  179 (397)
T ss_dssp             HHHHHHHHHHHHHHHCTTCCEEEESSCCHHHH----HHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTCCTTCEEEEC
T ss_pred             cHHHHHHHHHHHHhcCCCCeEEEeCCCchhHH----HHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhCCCCCEEEEe
Confidence            568886 4  3456899999999999999886    444567888888887    2   8999999987   67889999


Q ss_pred             ecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCcC----------CCCCCccEEEeccccccccCCCceeeE
Q 024619          146 ESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR----------PLELGADIVMHSATKFIAGHSDVMAGV  212 (265)
Q Consensus       146 ~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~~----------~~~~~~di~~~s~sK~~~g~~g~~~G~  212 (265)
                      ++|+||||.+.+   +++|+++|+++|+++|+||+|+......          ....+.++++.|+||.+ |++|+|.|+
T Consensus       180 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~riG~  258 (397)
T 3fsl_A          180 PCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIF-SLYGERVGG  258 (397)
T ss_dssp             SSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTT-TCGGGCCEE
T ss_pred             CCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccc-cCcCCCeeE
Confidence            999999999954   6799999999999999999998655430          11345679999999999 778999999


Q ss_pred             EEe
Q 024619          213 LAV  215 (265)
Q Consensus       213 v~~  215 (265)
                      ++.
T Consensus       259 ~~~  261 (397)
T 3fsl_A          259 LSV  261 (397)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            975

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=99.90  E-value=2.8e-22  Score=177.86  Aligned_cols=174  Identities=18%  Similarity=0.241  Sum_probs=133.8

Q ss_pred             CccCCC-CCh-hHHHHHHHHHhHhC------CCceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcC-C
Q 024619           47 YDYTRS-GNP-TRDALESLLAKLDK------ADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTP-K  116 (265)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~~l~~~~g------~~~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~-~  116 (265)
                      ..|.+. |.+ +++++++++.+..+      .+.++++++|++|+. ++..++++||.|+++.|+|+++.    ..++ .
T Consensus        80 ~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~----~~~~~~  155 (435)
T 3piu_A           80 ALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFD----RDLKWR  155 (435)
T ss_dssp             HHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHH----HHTTTT
T ss_pred             cccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHhcCCCCeEEECCCccccHH----HHHHHh
Confidence            356666 654 47777777765544      345666666679986 67778899999999999999987    3345 6


Q ss_pred             CCeEEEeecCC-------CHHHHHhhcCC------CceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCC
Q 024619          117 TGVVVKRVNTC-------DLDEVASAIGP------WTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMS  180 (265)
Q Consensus       117 ~g~~~~~~~~~-------d~~~l~~~~~~------~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~  180 (265)
                      .|.+++.++.+       |++++++++.+      ++++|++++|+||||.+.+   +++|+++|++||+++|+||+|+.
T Consensus       156 ~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~  235 (435)
T 3piu_A          156 TGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSG  235 (435)
T ss_dssp             TCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGG
T ss_pred             cCCEEEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccc
Confidence            89999988864       78999988864      7899999999999999965   58899999999999999999976


Q ss_pred             CCCcCC---------CC---------CCccEEEeccccccccCCCceeeEEEeechhHHHHHH
Q 024619          181 PVLSRP---------LE---------LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY  225 (265)
Q Consensus       181 ~~~~~~---------~~---------~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~  225 (265)
                      +.+...         .+         .+.++++.|+||++ |.+|+++|+++++++.+.....
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~-g~~G~r~G~~~~~~~~~~~~~~  297 (435)
T 3piu_A          236 TAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDL-GLPGFRVGAIYSNDDMVVAAAT  297 (435)
T ss_dssp             GCCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSSS-CCGGGCEEEEEESCHHHHHHHH
T ss_pred             cccCCCCCcCHHHhccccccccccCCCCCEEEEEeeeccc-CCCceeEEEEEeCCHHHHHHHH
Confidence            443210         01         33459999999999 6678999999987666655443

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=99.90  E-value=8.4e-23  Score=178.04  Aligned_cols=164  Identities=20%  Similarity=0.213  Sum_probs=136.6

Q ss_pred             hhHHHHHHHHHhHhCCC--ceEEecchHHHHH-HHHHh-cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC---
Q 024619           55 PTRDALESLLAKLDKAD--RALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~--~~i~~~~g~~al~-~~~~~-~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---  127 (265)
                      +...++++.+++++|.+  .++++++|++++. ++..+ +++||+|+++.|+|+++...+...++..|.+++.++.+   
T Consensus        59 ~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~  138 (390)
T 1elu_A           59 QLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATL  138 (390)
T ss_dssp             HHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGS
T ss_pred             HHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCC
Confidence            45788999999999977  4666667779986 66677 78999999999999998766545556678899988863   


Q ss_pred             ----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHH----HcCCEEEEeCCcCCCCCcCC-CCCCccEEEecc
Q 024619          128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAH----AHGALLLVDNSIMSPVLSRP-LELGADIVMHSA  198 (265)
Q Consensus       128 ----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~----~~~~~li~D~~~~~~~~~~~-~~~~~di~~~s~  198 (265)
                          |++++++.+.+++++|++++++||||.+.|+++|.++|+    ++|+++|+|++|+.+..... ...+.|++++|+
T Consensus       139 ~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~  218 (390)
T 1elu_A          139 NQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTG  218 (390)
T ss_dssp             SSSCHHHHHHTTCCTTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEES
T ss_pred             CccchHHHHHHhcCCCceEEEEeccccCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccCCcCCChhhcCCCEEEccc
Confidence                689999999889999999999999999999999999999    99999999999997765422 245689999999


Q ss_pred             ccccccCCCceeeEEEeechhH
Q 024619          199 TKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       199 sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                      ||++.++.|  .|+++++++.+
T Consensus       219 ~K~~~~~~g--~G~~~~~~~~~  238 (390)
T 1elu_A          219 HKWFAGPAG--VGGLYIHGDCL  238 (390)
T ss_dssp             SSTTCCCTT--CEEEEECTTTG
T ss_pred             cccccCCCc--eEEEEECHHhH
Confidence            997777766  59998887544

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=99.90  E-value=1.7e-23  Score=181.32  Aligned_cols=159  Identities=21%  Similarity=0.226  Sum_probs=134.5

Q ss_pred             hhHHHHHHH-HHhHhCCCceEEecch-HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeec--CC--
Q 024619           55 PTRDALESL-LAKLDKADRALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN--TC--  127 (265)
Q Consensus        55 ~~~~~l~~~-l~~~~g~~~~i~~~~g-~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~--  127 (265)
                      +..+++++. +++++|.+ .+++++| ++|+. ++..++++||+|++++|+|+++...    ++..|.+++.++  .+  
T Consensus        53 ~~~~~l~~~~la~~~~~~-~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~v~~~~~~~  127 (371)
T 2e7j_A           53 PPIHDFIHNQLPKFLGCD-VARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVA----AERAGLNIALVPKTDYPD  127 (371)
T ss_dssp             CCHHHHHHTHHHHHTTSS-EEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHH----HHHTTCEEEEECCCCTTT
T ss_pred             HHHHHHHHHHHHHHcCCC-EEEEeCChHHHHHHHHHHHhCCCCEEEEccCcchHHHHH----HHHcCCeEEEeecccCCC
Confidence            568899999 99999988 6666655 68986 6777789999999999999988744    466789999998  65  


Q ss_pred             ---CHHHHHhhcC-----CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEecc
Q 024619          128 ---DLDEVASAIG-----PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSA  198 (265)
Q Consensus       128 ---d~~~l~~~~~-----~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~  198 (265)
                         |++++++++.     +++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.+..+ .....+.|++++|+
T Consensus       128 ~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~  207 (371)
T 2e7j_A          128 YAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSG  207 (371)
T ss_dssp             CCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHHTCSEEEEEH
T ss_pred             CCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEECccccCCCCCChhhcCCCEEEecC
Confidence               8999999887     68999999999999999999999999999999999999999987764 23344689999999


Q ss_pred             ccccccCCCceeeEEEeechhH
Q 024619          199 TKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       199 sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                      ||+++++.  ++|+++++++.+
T Consensus       208 sK~~~~~~--~~G~~~~~~~~~  227 (371)
T 2e7j_A          208 HKSMAASG--PIGVMGMKEEWA  227 (371)
T ss_dssp             HHHSSCCS--SCEEEEECTTTT
T ss_pred             CcCCCCCC--CcEEEEEechhh
Confidence            99997654  579999887643

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=99.90  E-value=1.6e-22  Score=180.25  Aligned_cols=230  Identities=14%  Similarity=0.060  Sum_probs=153.4

Q ss_pred             eEeeccCCCCCCC-CCCCCeeeccccccCCC---CCCCCCccCCC-CCh-hHHHHHHHHHhHhCCC-------ceEE--e
Q 024619           12 LLMNFSNEFDPYG-ALSTPLYQTATFKQPSA---TENGPYDYTRS-GNP-TRDALESLLAKLDKAD-------RALC--F   76 (265)
Q Consensus        12 ~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~---~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~~-------~~i~--~   76 (265)
                      ..|+|+ ...|+. ..++++..+........   .......|.+. |.+ +++++++++.   |.+       .+++  +
T Consensus        50 ~~i~l~-~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~---g~~~~~~~~~~i~~~~t  125 (448)
T 3meb_A           50 KKVNLG-VGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLMF---GKDSKAAQEGRIASCQS  125 (448)
T ss_dssp             TCEEES-SCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHHHHHHHHH---CTTCHHHHTTCEEEEEE
T ss_pred             CeEEee-cccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhc---CCCccccCcCcEEEEEC
Confidence            369999 888844 44555555433221111   12345677766 765 3666666662   443       4555  6


Q ss_pred             cchHHHHHH---HHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC---C-----CHHHHHhhcC---CCceE
Q 024619           77 TSGMAALAA---VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT---C-----DLDEVASAIG---PWTKL  142 (265)
Q Consensus        77 ~~g~~al~~---~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~-----d~~~l~~~~~---~~~~~  142 (265)
                      ++|++|+..   +..++.+||+|++++|+|+.+...+...++..|.+++.++.   +     |++++++++.   +++++
T Consensus       126 ~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e~l~~~l~~~~~~~~~  205 (448)
T 3meb_A          126 LSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQSAPEKSIF  205 (448)
T ss_dssp             SHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSBCHHHHHHHHHHSCTTCEE
T ss_pred             CcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCcCHHHHHHHHHhCCCCcEE
Confidence            666788843   45678899999999999999975543222377888888775   2     7899998886   45788


Q ss_pred             EEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCcCC-----------CCCCccEEEeccccccccCCCc
Q 024619          143 VWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSRP-----------LELGADIVMHSATKFIAGHSDV  208 (265)
Q Consensus       143 i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~~~-----------~~~~~di~~~s~sK~~~g~~g~  208 (265)
                      +++++|+||||.+.+   +++|+++|+++|+++|+||+|........           .....++++.|+||.+ |++|+
T Consensus       206 v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~  284 (448)
T 3meb_A          206 LFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNF-GLYGE  284 (448)
T ss_dssp             EEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTS-CCGGG
T ss_pred             EEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEEEecccccC-CCccc
Confidence            899999999999976   56699999999999999999985444310           1123568899999999 67889


Q ss_pred             eeeEE--Ee--------ech----hHHHHHHHHHHhccCCCChhHHHHHHhc
Q 024619          209 MAGVL--AV--------KGE----RLAKELYFLQNAEGSGLAPFDCWICLRG  246 (265)
Q Consensus       209 ~~G~v--~~--------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (265)
                      |.|++  ++        ++.    .+...+...........+...+..+...
T Consensus       285 RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~  336 (448)
T 3meb_A          285 RIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMSAIHGAYIVQVI  336 (448)
T ss_dssp             CCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHH
T ss_pred             cceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHH
Confidence            99998  66        443    3333333333444444554444443333

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=99.90  E-value=6.7e-23  Score=179.46  Aligned_cols=163  Identities=16%  Similarity=0.206  Sum_probs=134.8

Q ss_pred             hhHHHHHHHHHhHhCC---CceEEecchHHHHH-HHHHh----cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC
Q 024619           55 PTRDALESLLAKLDKA---DRALCFTSGMAALA-AVTHL----LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT  126 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~---~~~i~~~~g~~al~-~~~~~----~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~  126 (265)
                      +..+++++.+++++|.   +.++++++|++|+. ++..+    +++||+|++++|+|++....+...++..|.+++.++.
T Consensus        67 ~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  146 (406)
T 1kmj_A           67 EKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPL  146 (406)
T ss_dssp             HHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECB
T ss_pred             HHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEec
Confidence            3478899999999998   24555566679986 66777    7899999999999998765555556667889988886


Q ss_pred             C-----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEecccc
Q 024619          127 C-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATK  200 (265)
Q Consensus       127 ~-----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK  200 (265)
                      +     |++++++++.+++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.+... .....+.|++++|+||
T Consensus       147 ~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K  226 (406)
T 1kmj_A          147 NPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHK  226 (406)
T ss_dssp             CTTSCBCGGGHHHHCCTTEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGG
T ss_pred             CCCCCcCHHHHHHHhccCCeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcCCCCCcccccCCCEEEEEchh
Confidence            4     789999999989999999999999999999999999999999999999999987653 2223468999999999


Q ss_pred             ccccCCCceeeEEEeechhH
Q 024619          201 FIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       201 ~~~g~~g~~~G~v~~~~~~~  220 (265)
                      ++ |++|  +|+++++++.+
T Consensus       227 ~~-g~~G--~G~~~~~~~~~  243 (406)
T 1kmj_A          227 LY-GPTG--IGILYVKEALL  243 (406)
T ss_dssp             TT-SCTT--CEEEEECHHHH
T ss_pred             cc-CCCC--cEEEEEeHHHH
Confidence            98 7777  59998876443

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=99.90  E-value=3.4e-23  Score=182.15  Aligned_cols=162  Identities=14%  Similarity=0.130  Sum_probs=135.0

Q ss_pred             hhHHHHHHHHHhHhCCCc--eE-EecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC---
Q 024619           55 PTRDALESLLAKLDKADR--AL-CFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~--~i-~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---  127 (265)
                      +..+++++++++++|.+.  .+ ++++|++++. ++..++++||+|++++|.|++..  +...++..|.+++.++.+   
T Consensus        44 ~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~  121 (416)
T 3isl_A           44 GIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASVIEPEDDVLIPIYGRFGYL--LTEIAERYGANVHMLECEWGT  121 (416)
T ss_dssp             HHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTTC
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHhcCCCCEEEEecCCcccHH--HHHHHHhcCCeeEEEecCCCC
Confidence            458899999999999873  33 4456668886 67778999999999999997622  235567789999999876   


Q ss_pred             --CHHHHHhhcC-CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEeccccccc
Q 024619          128 --DLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIA  203 (265)
Q Consensus       128 --d~~~l~~~~~-~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~~~  203 (265)
                        |++++++++. +++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.+... .....+.|++++|++|++.
T Consensus       122 ~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~l~  201 (416)
T 3isl_A          122 VFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIGGCEVKVDEWKIDAAIGGTQKCLS  201 (416)
T ss_dssp             CCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCHHHHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTC
T ss_pred             CCCHHHHHHHHhhCCCcEEEEEccCCCCceecCHHHHHHHHHHcCCEEEEECCccccCCCcchhhcCCCEEEecCccccC
Confidence              8999999997 68999999999999999999999999999999999999999987764 3344578999999999977


Q ss_pred             cCCCceeeEEEeechhH
Q 024619          204 GHSDVMAGVLAVKGERL  220 (265)
Q Consensus       204 g~~g~~~G~v~~~~~~~  220 (265)
                      ++.|  .|+++.+++.+
T Consensus       202 g~~g--~g~~~~~~~~~  216 (416)
T 3isl_A          202 VPSG--MAPITYNERVA  216 (416)
T ss_dssp             CCSS--EEEEEECHHHH
T ss_pred             CCCC--eEEEEECHHHH
Confidence            8877  58888877654

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=99.90  E-value=9.1e-24  Score=183.30  Aligned_cols=159  Identities=19%  Similarity=0.189  Sum_probs=131.6

Q ss_pred             hhHHHHHHHHHhHhCCC-c-eEEecchHHHHH-HHHHhc----CCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC
Q 024619           55 PTRDALESLLAKLDKAD-R-ALCFTSGMAALA-AVTHLL----GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC  127 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~-~-~i~~~~g~~al~-~~~~~~----~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  127 (265)
                      +..+++++++++++|.+ + ++++++|++++. ++..+.    ++||+|+++++.|+++...+. .++..|++++.++.+
T Consensus        43 ~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~-~~~~~g~~~~~v~~~  121 (382)
T 4hvk_A           43 EAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAK-FLQKQGFEVEYIPVG  121 (382)
T ss_dssp             HHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHH-HHHHTTCEEEEECBC
T ss_pred             HHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHHHhhhhhcCCCCEEEECCCCcHHHHHHHH-HHHhcCCEEEEeccC
Confidence            45889999999999987 3 555555568886 566666    899999999999999887653 335578999999865


Q ss_pred             -----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCC-CCCCccEEEeccccc
Q 024619          128 -----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRP-LELGADIVMHSATKF  201 (265)
Q Consensus       128 -----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~-~~~~~di~~~s~sK~  201 (265)
                           |++++++++.+++++|++++++||||.+.|+++|.++|+++|+ +|+|++|+.+..... ...+.|++++|+||+
T Consensus       122 ~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~-li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~  200 (382)
T 4hvk_A          122 KYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHIDATASVGQIEVDVEKIGADMLTISSNDI  200 (382)
T ss_dssp             TTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHHHHSSSSE-EEEECTTTBTTBCCCHHHHTCSEEEEESGGG
T ss_pred             CCCCcCHHHHHHHhccCceEEEEECCCCCceeeCCHHHHHHHHHHcCE-EEEEhHHhcCCCCCCchhcCCCEEEEeHHHh
Confidence                 8999999999999999999999999999999999999999999 999999988766432 234789999999997


Q ss_pred             cccCCCceeeEEEeech
Q 024619          202 IAGHSDVMAGVLAVKGE  218 (265)
Q Consensus       202 ~~g~~g~~~G~v~~~~~  218 (265)
                      + |+.|  .|+++++++
T Consensus       201 ~-g~~g--~g~~~~~~~  214 (382)
T 4hvk_A          201 Y-GPKG--VGALWIRKE  214 (382)
T ss_dssp             T-SCTT--CEEEEEETT
T ss_pred             c-CCCc--eEEEEEcCc
Confidence            6 6766  477777664

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=99.90  E-value=2e-22  Score=177.48  Aligned_cols=196  Identities=14%  Similarity=0.098  Sum_probs=136.2

Q ss_pred             eeEeeccCCCCCCCC---C-CCCeeeccccc-cCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhC----CCceEE--ec
Q 024619           11 TLLMNFSNEFDPYGA---L-STPLYQTATFK-QPSATENGPYDYTRS-GNP-TRDALESLLAKLDK----ADRALC--FT   77 (265)
Q Consensus        11 ~~~~~~~~~~~~~g~---~-~~~~~~~~~~~-~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g----~~~~i~--~~   77 (265)
                      ..+++|+ .++|+..   . ++|.+...... ..  .....+.|++. |.+ +++++++++...+|    .+++++  ++
T Consensus        29 ~~~i~l~-~g~~~d~~~~~~~~~~v~~a~~~~~~--~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~  105 (412)
T 1yaa_A           29 ATKVDLG-IGAYRDDNGKPWVLPSVKAAEKLIHN--DSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSL  105 (412)
T ss_dssp             SSCEECS-SCCCBCTTSCBCCCHHHHHHHHHHHT--CTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEE
T ss_pred             CCeEEEe-eeeeeCCCCCCCCcHHHHHHHHhhhc--CcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEecc
Confidence            4579999 7776332   2 22333332211 11  11123467655 665 47888888766544    445555  66


Q ss_pred             chHHHHHHH---HHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC-------CCHHHHHhhcCCC---ceEEE
Q 024619           78 SGMAALAAV---THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-------CDLDEVASAIGPW---TKLVW  144 (265)
Q Consensus        78 ~g~~al~~~---~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~~~~~---~~~i~  144 (265)
                      +|++|+.++   ...+++||+|++++|+|+++..    .++..|.+++.++.       .|++++++++.++   +.+++
T Consensus       106 g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~----~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~  181 (412)
T 1yaa_A          106 SGTGALHISAKFFSKFFPDKLVYLSKPTWANHMA----IFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVL  181 (412)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHH----HHHTTTCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEE
T ss_pred             chHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHH----HHHHcCceEEEEeeecCCCCccCHHHHHHHHHhCCCCCEEEE
Confidence            667888643   4556899999999999999974    44567888888876       2789998887532   45556


Q ss_pred             EecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCcC------CC-----CCC---ccEEEeccccccccCCC
Q 024619          145 VESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR------PL-----ELG---ADIVMHSATKFIAGHSD  207 (265)
Q Consensus       145 ~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~~------~~-----~~~---~di~~~s~sK~~~g~~g  207 (265)
                      +++|+||||.+.+   +++|+++|+++|+++|+||+|+...+..      +.     ...   .+++++|+||.+ |++|
T Consensus       182 ~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G  260 (412)
T 1yaa_A          182 HSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNA-GMYG  260 (412)
T ss_dssp             ECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTS-CCGG
T ss_pred             eCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEeccCCCC-CCcC
Confidence            6999999999965   6789999999999999999996433221      11     122   579999999999 6889


Q ss_pred             ceeeEEE
Q 024619          208 VMAGVLA  214 (265)
Q Consensus       208 ~~~G~v~  214 (265)
                      +|.|+++
T Consensus       261 lriG~~~  267 (412)
T 1yaa_A          261 ERVGCFH  267 (412)
T ss_dssp             GCEEEEE
T ss_pred             CcceEEE
Confidence            9999998

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.90  E-value=2.2e-22  Score=176.61  Aligned_cols=187  Identities=24%  Similarity=0.309  Sum_probs=144.4

Q ss_pred             hhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHh-cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-----
Q 024619           55 PTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~-~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----  127 (265)
                      +...++++.+++++|.++.+++++|++|+. ++..+ +++||+|+++.|+|+++..    .++..|.+++.++.+     
T Consensus        63 ~~~~~l~~~la~~~~~~~~v~~~~Gt~a~~~~l~~~~~~~gd~vl~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~  138 (399)
T 2oga_A           63 PELEGFEAEFAAYCETDHAVGVNSGMDALQLALRGLGIGPGDEVIVPSHTYIASWL----AVSATGATPVPVEPHEDHPT  138 (399)
T ss_dssp             HHHHHHHHHHHHHTTSSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHH----HHHHTTCEEEEECBCSSSSS
T ss_pred             hhHHHHHHHHHHHHCCCeEEEecCHHHHHHHHHHHhCCCCcCEEEECCCccHHHHH----HHHHCCCEEEEEecCCCCCC
Confidence            668899999999999988999999999986 66777 7899999999999999874    345578898888753     


Q ss_pred             -CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCC--ccEEEecc--cccc
Q 024619          128 -DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELG--ADIVMHSA--TKFI  202 (265)
Q Consensus       128 -d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~--~di~~~s~--sK~~  202 (265)
                       |++++++++.+++++|+   ++||||.+.|+++|.++|+++|+++|+|++|+.+........+  .|+++.|+  +|++
T Consensus       139 ~d~~~l~~~i~~~~~~v~---~~n~tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~di~~~S~~~sK~~  215 (399)
T 2oga_A          139 LDPLLVEKAITPRTRALL---PVHLYGHPADMDALRELADRHGLHIVEDAAQAHGARYRGRRIGAGSSVAAFSFYPGKNL  215 (399)
T ss_dssp             BCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHHTCEECEECTTCTTCEETTEETTCTTCEEEEECCTTSSS
T ss_pred             cCHHHHHHhcCCCCeEEE---EeCCcCCccCHHHHHHHHHHcCCEEEEECcccccCccCCeecccccCEEEEeCCCCccC
Confidence             78999999988888887   5689999999999999999999999999999877533222223  58999999  6999


Q ss_pred             ccCCCceeeEEEeechhHHHHHHHHHHhc------------cCCCChhHHHHHHhccCch
Q 024619          203 AGHSDVMAGVLAVKGERLAKELYFLQNAE------------GSGLAPFDCWICLRGVKTM  250 (265)
Q Consensus       203 ~g~~g~~~G~v~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~l~~~  250 (265)
                       +++| ++|+++.+++.+.+.+.......            ...+++..++.+...++.+
T Consensus       216 -~~~G-~~g~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~  273 (399)
T 2oga_A          216 -GCFG-DGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHL  273 (399)
T ss_dssp             -CCSS-CCEEEEESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTH
T ss_pred             -CcCC-ceEEEEeCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHH
Confidence             5656 78999887555555444443321            1234566666555555544

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=99.89  E-value=2.4e-22  Score=173.56  Aligned_cols=221  Identities=14%  Similarity=0.173  Sum_probs=149.4

Q ss_pred             cceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCC--ceEEecchHHHHHHH
Q 024619            9 VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD--RALCFTSGMAALAAV   86 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~--~~i~~~~g~~al~~~   86 (265)
                      .+..+|+|+...++++  ++|.+.........    ....|+.   +...++++.++++++.+  .++++++|++++.++
T Consensus        24 ~~~~~idl~~~~~~~~--~~~~v~~a~~~~~~----~~~~y~~---~~~~~l~~~la~~~~~~~~~i~~~~g~t~al~~~   94 (361)
T 3ftb_A           24 KGRELLDYSSNINPLG--IPKSFLNNIDEGIK----NLGVYPD---VNYRRLNKSIENYLKLKDIGIVLGNGASEIIELS   94 (361)
T ss_dssp             ----CEETTCCCCTTC--SCHHHHTTHHHHHH----GGGSCCC---TTCHHHHHHHHHHHTCCSCEEEEESSHHHHHHHH
T ss_pred             CCCCEEEecCCCCCCC--CCHHHHHHHHHHHH----HhcCCCC---ccHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHH
Confidence            3457899994334444  23333332211111    1234432   33577888888888864  355555566999765


Q ss_pred             HHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-----CHHHHHhhcCCCceEEEEecCCCCcccccc---H
Q 024619           87 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICD---I  158 (265)
Q Consensus        87 ~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l  158 (265)
                      ...+   |+|+++.|+|+++..    .++..|.+++.++.+     +++++++++.+ +++|++++|+||||.+.+   +
T Consensus        95 ~~~~---d~vi~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l  166 (361)
T 3ftb_A           95 ISLF---EKILIIVPSYAEYEI----NAKKHGVSVVFSYLDENMCIDYEDIISKIDD-VDSVIIGNPNNPNGGLINKEKF  166 (361)
T ss_dssp             HTTC---SEEEEEESCCTHHHH----HHHHTTCEEEEEECCTTSCCCHHHHHHHTTT-CSEEEEETTBTTTTBCCCHHHH
T ss_pred             HHHc---CcEEEecCChHHHHH----HHHHcCCeEEEeecCcccCCCHHHHHHhccC-CCEEEEeCCCCCCCCCCCHHHH
Confidence            5555   999999999999874    445578999988854     56899999988 999999999999999975   6


Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCCCCc-------CCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhc
Q 024619          159 RKIAEMAHAHGALLLVDNSIMSPVLS-------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE  231 (265)
Q Consensus       159 ~~i~~~a~~~~~~li~D~~~~~~~~~-------~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~  231 (265)
                      ++|+++|++||+++|+||+|+.....       .....+.++++.|+||++ +++|+++|+++..++.+.+.+....  .
T Consensus       167 ~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~g~~~~~~~~~~~~~~~~~--~  243 (361)
T 3ftb_A          167 IHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKFF-AMPGIRFGYGITNNKEIAAKIKAKQ--N  243 (361)
T ss_dssp             HHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSSTT-SCGGGCCEEEEESCHHHHHHHHTTS--C
T ss_pred             HHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhhc-CCCCcceeEEEeCCHHHHHHHHhhC--C
Confidence            78888999999999999999754431       112335668999999999 6678999999845555544333222  2


Q ss_pred             cCCCChhHHHHHHhccCc
Q 024619          232 GSGLAPFDCWICLRGVKT  249 (265)
Q Consensus       232 ~~~~~~~~~~~~~~~l~~  249 (265)
                      ....++.....+...++.
T Consensus       244 ~~~~~~~~~~~~~~~l~~  261 (361)
T 3ftb_A          244 PWNINCFAEMAAINCLKD  261 (361)
T ss_dssp             TTCSCHHHHHHHHHTSSC
T ss_pred             CCCCCHHHHHHHHHHhcC
Confidence            235566666666666664

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=99.89  E-value=2.2e-22  Score=174.96  Aligned_cols=160  Identities=16%  Similarity=0.152  Sum_probs=131.9

Q ss_pred             hHHHHHHHHHhHhCCC--ceEEecchHHHHH-HHHHhc----CCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC--
Q 024619           56 TRDALESLLAKLDKAD--RALCFTSGMAALA-AVTHLL----GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT--  126 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~~i~~~~g~~al~-~~~~~~----~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~--  126 (265)
                      ..+++++.+++++|.+  .++++++|++++. ++..+.    ++||+|++++|+|+++...+. .++..|.+++.++.  
T Consensus        45 ~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-~~~~~g~~~~~v~~~~  123 (384)
T 1eg5_A           45 HMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMK-YLSMKGFKVKYVPVDS  123 (384)
T ss_dssp             HHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHH-HHHHTTCEEEECCBCT
T ss_pred             HHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHHhhhhhccCCCCEEEECCCCchHHHHHHH-HHHhcCCEEEEEccCC
Confidence            4788999999999976  4666666679986 566666    799999999999998865542 33556889999886  


Q ss_pred             ---CCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcC--CEEEEeCCcCCCCCc-CCCCCCccEEEecccc
Q 024619          127 ---CDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHG--ALLLVDNSIMSPVLS-RPLELGADIVMHSATK  200 (265)
Q Consensus       127 ---~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~--~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK  200 (265)
                         .|++++++++.+++++|++++++||||.+.|+++|.++|+++|  +++|+||+|+.+... .....+.|++++|+||
T Consensus       124 ~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK  203 (384)
T 1eg5_A          124 RGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHK  203 (384)
T ss_dssp             TSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGG
T ss_pred             CCccCHHHHHHHhCCCCeEEEEECCCCCcccccCHHHHHHHHHhcCCceEEEEEhhhhcCCcccCchhcCCCEEEecHHH
Confidence               3899999999889999999999999999999999999999999  999999999866543 2223468999999999


Q ss_pred             ccccCCCceeeEEEeechh
Q 024619          201 FIAGHSDVMAGVLAVKGER  219 (265)
Q Consensus       201 ~~~g~~g~~~G~v~~~~~~  219 (265)
                      ++ |++|  .|+++++++.
T Consensus       204 ~~-g~~G--~G~~~~~~~~  219 (384)
T 1eg5_A          204 FH-GPKG--VGITYIRKGV  219 (384)
T ss_dssp             GT-SCTT--CEEEEECTTS
T ss_pred             hc-CCCc--eEEEEEcCCC
Confidence            87 6777  4898888753

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=99.89  E-value=4.9e-23  Score=180.05  Aligned_cols=160  Identities=17%  Similarity=0.253  Sum_probs=132.4

Q ss_pred             hhHHHHHHHHHhHhCCC-c-eEEe-cchHHHHH-HHHHhcCCCCEEEEcCCCCCC--hHHHHHhhcCCCCeEEEeecC--
Q 024619           55 PTRDALESLLAKLDKAD-R-ALCF-TSGMAALA-AVTHLLGTGEEIVAGDDLYGG--TDRLLSRVTPKTGVVVKRVNT--  126 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~-~-~i~~-~~g~~al~-~~~~~~~~g~~viv~~~~~~~--~~~~~~~~~~~~g~~~~~~~~--  126 (265)
                      +.++++++++++++|.+ + .+++ ++|++|+. ++..++++||+|++++|+|++  +.    ..++..|.+++.++.  
T Consensus        67 ~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~~~~~gd~Vl~~~~~~~~~~~~----~~~~~~g~~~~~v~~~~  142 (393)
T 1vjo_A           67 ALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGNRLV----DMAGRYGADVRTISKPW  142 (393)
T ss_dssp             HHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHH----HHHHHTTCEEEEEECCT
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHhccCCCCEEEEEcCChhHHHHH----HHHHHcCCceEEEecCC
Confidence            46899999999999986 4 4544 55568986 677788999999999999987  54    445667889988885  


Q ss_pred             ---CCHHHHHhhcCC-CceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEeccccc
Q 024619          127 ---CDLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKF  201 (265)
Q Consensus       127 ---~d~~~l~~~~~~-~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~  201 (265)
                         .|++++++++.+ ++++|++++|+||||.+.|+++|.++|+++|+++|+||+|+.+... .....+.|++++|+||+
T Consensus       143 ~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~di~~~s~sK~  222 (393)
T 1vjo_A          143 GEVFSLEELRTALETHRPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKG  222 (393)
T ss_dssp             TCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSST
T ss_pred             CCCCCHHHHHHHHhhCCceEEEEeccCCCcceeccHHHHHHHHHHcCCEEEEECCccccCcCCcccccCccEEEEcCccc
Confidence               489999999887 8999999999999999999999999999999999999999966543 22234689999999999


Q ss_pred             cccCCCceeeEEEeechhH
Q 024619          202 IAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       202 ~~g~~g~~~G~v~~~~~~~  220 (265)
                      +++++  +.|+++++++.+
T Consensus       223 l~~~~--~~G~l~~~~~~~  239 (393)
T 1vjo_A          223 LGCSP--GASPFTMSSRAI  239 (393)
T ss_dssp             TCSCS--SCEEEEECHHHH
T ss_pred             ccCCC--ceEEEEECHHHH
Confidence            97765  469998887644

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=99.89  E-value=2e-23  Score=181.53  Aligned_cols=159  Identities=19%  Similarity=0.202  Sum_probs=130.9

Q ss_pred             hhHHHHHHHHHhHhCCC--ceEEecchHHHHH-HHHHhc----CCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC-
Q 024619           55 PTRDALESLLAKLDKAD--RALCFTSGMAALA-AVTHLL----GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-  126 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~--~~i~~~~g~~al~-~~~~~~----~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~-  126 (265)
                      +..+++++++++++|.+  .++++++|++|+. ++..+.    ++||+|++++|+|+++...+. .++..|++++.++. 
T Consensus        43 ~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~-~~~~~g~~~~~v~~~  121 (382)
T 4eb5_A           43 EAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAK-FLQKQGFEVEYIPVG  121 (382)
T ss_dssp             HHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHH-HHTTTTCEEEEECBC
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHHHHHHHhhccCCCCEEEECCCcchHHHHHHH-HHHhCCcEEEEeccC
Confidence            45889999999999986  4555556679986 566666    899999999999998876653 34567999999986 


Q ss_pred             ----CCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCC-CCCCccEEEeccccc
Q 024619          127 ----CDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRP-LELGADIVMHSATKF  201 (265)
Q Consensus       127 ----~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~-~~~~~di~~~s~sK~  201 (265)
                          .|++++++++.+++++|++++++||||.+.|+++|.++|+++|++ |+|++|+.+..... ...+.|++++|+||+
T Consensus       122 ~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~-i~D~a~~~g~~~~~~~~~~~di~~~s~sK~  200 (382)
T 4eb5_A          122 KYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEVLAGKAAL-HIDATASVGQIEVDVEKIGADMLTISSNDI  200 (382)
T ss_dssp             TTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHHHHTTSSEE-EEECTTTBTTBCCCHHHHTCSEEEEETGGG
T ss_pred             CCCccCHHHHHHHhcCCCeEEEEeccCCCccccCCHHHHHHHHHHCCCE-EEEcchhcCCcccCccccCCCEEEeehHHh
Confidence                389999999988899999999999999999999999999999999 99999997654321 223689999999998


Q ss_pred             cccCCCceeeEEEeech
Q 024619          202 IAGHSDVMAGVLAVKGE  218 (265)
Q Consensus       202 ~~g~~g~~~G~v~~~~~  218 (265)
                      + |++|+  |+++++++
T Consensus       201 ~-g~~g~--G~~~~~~~  214 (382)
T 4eb5_A          201 Y-GPKGV--GALWIRKE  214 (382)
T ss_dssp             T-CCSSC--EEEEEETT
T ss_pred             c-CCCce--EEEEEccc
Confidence            6 67774  77777765

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=99.89  E-value=9.1e-23  Score=180.60  Aligned_cols=193  Identities=15%  Similarity=0.078  Sum_probs=138.0

Q ss_pred             CCccCCC-CChhHHHHHHHHHhHhCCC-ceEEecch-HHHH--H-HHHHhcC--C----------CCEEEEcCCCCCChH
Q 024619           46 PYDYTRS-GNPTRDALESLLAKLDKAD-RALCFTSG-MAAL--A-AVTHLLG--T----------GEEIVAGDDLYGGTD  107 (265)
Q Consensus        46 ~~~y~~~-g~~~~~~l~~~l~~~~g~~-~~i~~~~g-~~al--~-~~~~~~~--~----------g~~viv~~~~~~~~~  107 (265)
                      .+.|++. |.+   ++++.++++++.+ +.+++++| ++++  . ++..+++  +          ||+|++++|+|+.+.
T Consensus        71 ~~~Y~~~~g~~---~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~  147 (427)
T 3ppl_A           71 VRNYGGLDGIV---DIRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHF  147 (427)
T ss_dssp             TTSSCCSSCCH---HHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHH
T ss_pred             hcCCCCCCCcH---HHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHH
Confidence            4667665 554   4445555555665 45555555 5888  3 5566666  6          899999999999887


Q ss_pred             HHHHhhcCCCCeEEEeecCC----CHHHHHhhcC-CCceEEEEe-cCCCCccccccHH---HHHHHH-HHcCCEEEEeCC
Q 024619          108 RLLSRVTPKTGVVVKRVNTC----DLDEVASAIG-PWTKLVWVE-SPTNPRQQICDIR---KIAEMA-HAHGALLLVDNS  177 (265)
Q Consensus       108 ~~~~~~~~~~g~~~~~~~~~----d~~~l~~~~~-~~~~~i~~~-~~~np~G~~~~l~---~i~~~a-~~~~~~li~D~~  177 (265)
                          ..++..|.+++.++.+    |++++++++. +++++|+++ +++||||.+.+.+   +|+++| +++|+++|+||+
T Consensus       148 ----~~~~~~g~~~~~v~~~~~g~d~~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~  223 (427)
T 3ppl_A          148 ----SITERFGFEMISVPMNEDGPDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNA  223 (427)
T ss_dssp             ----HHHHHTTCEEEEEEEETTEECHHHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECT
T ss_pred             ----HHHHHcCCEEEEeCCCCCCCCHHHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECC
Confidence                4446678898888764    8999999995 678988865 8999999998765   899999 999999999999


Q ss_pred             cCCCCCcC-------C-------CCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHH
Q 024619          178 IMSPVLSR-------P-------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC  243 (265)
Q Consensus       178 ~~~~~~~~-------~-------~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (265)
                      |+...+..       .       ...+.+++++|+||++ + +|+|+|+++.+++ +...+...........+...+..+
T Consensus       224 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~-~G~r~G~~~~~~~-l~~~~~~~~~~~~~~~~~~~q~~~  300 (427)
T 3ppl_A          224 YAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKIT-L-AGAGVSFFLTSAE-NRKWYTGHAGIRGIGPNKVNQLAH  300 (427)
T ss_dssp             TTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTS-C-TTSSCEEEECCHH-HHHHHHHHHHHHCSCCCHHHHHHH
T ss_pred             CcccccCCCCCCccchhhhhhccCCCCcEEEEechhhcc-C-cCccEEEEEcCHH-HHHHHHHHhhcccCCCCHHHHHHH
Confidence            98643321       1       1346789999999983 4 4799999988765 444455555555555665555544


Q ss_pred             HhccC
Q 024619          244 LRGVK  248 (265)
Q Consensus       244 ~~~l~  248 (265)
                      ...++
T Consensus       301 ~~~l~  305 (427)
T 3ppl_A          301 ARYFG  305 (427)
T ss_dssp             HHHHC
T ss_pred             HHHHh
Confidence            44443

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=99.89  E-value=1.1e-22  Score=177.54  Aligned_cols=161  Identities=17%  Similarity=0.198  Sum_probs=131.1

Q ss_pred             hHHHHHHHHHhHhCCC-c-eEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-----
Q 024619           56 TRDALESLLAKLDKAD-R-ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~-~-~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----  127 (265)
                      ..+++++.+++++|.+ + ++++++|++++. ++..++++||+|++++|+|+++.  +...++..|.+++.++.+     
T Consensus        43 ~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~  120 (392)
T 2z9v_A           43 LYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASLISPDDVVLNLASGVYGKG--FGYWAKRYSPHLLEIEVPYNEAI  120 (392)
T ss_dssp             HHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHHCCTTCCEEEEESSHHHHH--HHHHHHHHCSCEEEEECCTTSCC
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHhcCCCCEEEEecCCcccHH--HHHHHHHcCCceEEeeCCCCCCC
Confidence            4789999999999976 4 555566678986 66777899999999999998763  224445567788887753     


Q ss_pred             CHHHHHhhc--CCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcC-CCCCCccEEEecccccccc
Q 024619          128 DLDEVASAI--GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR-PLELGADIVMHSATKFIAG  204 (265)
Q Consensus       128 d~~~l~~~~--~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~-~~~~~~di~~~s~sK~~~g  204 (265)
                      |++++++++  .+++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.+.... ....+.|++++|+||++.+
T Consensus       121 d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~sK~~~~  200 (392)
T 2z9v_A          121 DPQAVADMLKAHPEITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFGGMKTHPEDCKADIYVTGPNKCLGA  200 (392)
T ss_dssp             CHHHHHHHHHHCTTCCEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEEECTTTBTTBSCCGGGGTCSEEEECSSSTTCC
T ss_pred             CHHHHHHHHhcCCCCcEEEEeccCCCCceeccHHHHHHHHHHcCCeEEEEcccccCCcccccccccceEEEecCcccccC
Confidence            799999988  4689999999999999999999999999999999999999998766542 2334689999999998878


Q ss_pred             CCCceeeEEEeechhH
Q 024619          205 HSDVMAGVLAVKGERL  220 (265)
Q Consensus       205 ~~g~~~G~v~~~~~~~  220 (265)
                      ++|+  |+++++++.+
T Consensus       201 ~~g~--G~l~~~~~~~  214 (392)
T 2z9v_A          201 PPGL--TMMGVSERAW  214 (392)
T ss_dssp             CSCC--EEEEECHHHH
T ss_pred             CCce--eEEEECHHHH
Confidence            8875  8888877544

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.89  E-value=1.1e-22  Score=174.99  Aligned_cols=197  Identities=22%  Similarity=0.231  Sum_probs=135.0

Q ss_pred             eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHh
Q 024619           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL   89 (265)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~   89 (265)
                      +.+|+|+ ++-...  ++|.+.... ....   .....|.+  .+...++++.+++++|.++.+++++|++++. ++..+
T Consensus         3 ~~~i~~~-~~~~~~--p~~~~~~a~-~~~~---~~~~~y~~--~~~~~~l~~~la~~~g~~~~~~~~~gt~a~~~~~~~~   73 (347)
T 1jg8_A            3 HMMIDLR-SDTVTK--PTEEMRKAM-AQAE---VGDDVYGE--DPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAH   73 (347)
T ss_dssp             --CEECS-CGGGCC--CCHHHHHHH-HTCC---CCCGGGTC--CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHH
T ss_pred             ceEEEec-cccCCC--CCHHHHHHH-hcCC---CCCcccCC--ChHHHHHHHHHHHHhCCceEEEecCcHHHHHHHHHHh
Confidence            5678888 443332  333333322 1111   11234544  3668899999999999998999999998875 66777


Q ss_pred             cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC----CCHHHHHhhcCC------CceEEEEecCCCCc-ccccc-
Q 024619           90 LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT----CDLDEVASAIGP------WTKLVWVESPTNPR-QQICD-  157 (265)
Q Consensus        90 ~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~d~~~l~~~~~~------~~~~i~~~~~~np~-G~~~~-  157 (265)
                      +++||+|++++|+|.+..... ..++..|++++.+..    .|++++++++.+      ++++|++++|+||| |.+.+ 
T Consensus        74 ~~~gd~Vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~  152 (347)
T 1jg8_A           74 TQRGDEVILEADSHIFWYEVG-AMAVLSGVMPHPVPGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPL  152 (347)
T ss_dssp             CCTTCEEEEETTCHHHHSSTT-HHHHHTCCEEEEECEETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCH
T ss_pred             cCCCCEEEEcCcchhhhcccc-chhhccCeEEEEecCCCCccCHHHHHHHhccccccccCceEEEEeccccccCCccCcH
Confidence            899999999999986532100 123446788877721    289999999874      68999999999999 99865 


Q ss_pred             --HHHHHHHHHHcCCEEEEeCCcCCCCC---c-C--CCCCCccEEEeccccccccCCCceeeEEEeechhH
Q 024619          158 --IRKIAEMAHAHGALLLVDNSIMSPVL---S-R--PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       158 --l~~i~~~a~~~~~~li~D~~~~~~~~---~-~--~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                        +++|+++|+++|+++++|++|..+..   + .  ....+.|.++.|+||+++++   .+++++.+++.+
T Consensus       153 ~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~---~G~~~~~~~~~~  220 (347)
T 1jg8_A          153 ENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAP---VGSVVVGDRDFI  220 (347)
T ss_dssp             HHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCS---SCEEEEECHHHH
T ss_pred             HHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhcccccEEEEecccccCCC---ceEEEEcCHHHH
Confidence              57899999999999999998753211   1 1  11225778888999999654   244565555433

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=99.89  E-value=1.7e-22  Score=176.33  Aligned_cols=197  Identities=12%  Similarity=0.095  Sum_probs=154.8

Q ss_pred             hhHHHHHHHH-HhHhC-CCceEEecchHHHHH-HHHHh-cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC---
Q 024619           55 PTRDALESLL-AKLDK-ADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (265)
Q Consensus        55 ~~~~~l~~~l-~~~~g-~~~~i~~~~g~~al~-~~~~~-~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---  127 (265)
                      +..+++++.+ ++++| .++++++++|++|+. ++..+ +++||+|+++.++|+++...    ++..|++++.++++   
T Consensus        36 ~~~~~l~~~~~a~~~g~~~~~v~~~sgt~al~~al~~l~~~~Gd~Vi~~~~~~~~~~~~----~~~~G~~~~~v~~~~~~  111 (377)
T 3ju7_A           36 PINQRFEQTIMSGFFQNRGAVTTVANATLGLMAAIQLKKRKKGKYALMPSFTFPATPLA----AIWCGLEPYFIDISIDD  111 (377)
T ss_dssp             HHHHHHHHHHHHHTSTTCSEEEEESCHHHHHHHHHHHHSCTTCCEEEEESSSCTHHHHH----HHHTTCEEEEECBCTTT
T ss_pred             HHHHHHHHHHHHHHhCCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHH----HHHcCCEEEEEecCCcc
Confidence            6789999999 99999 778999999999986 66777 89999999999999998743    45679999998864   


Q ss_pred             ---CHHHHHhhc-CCC--ceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCC---CccEEEecc
Q 024619          128 ---DLDEVASAI-GPW--TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLEL---GADIVMHSA  198 (265)
Q Consensus       128 ---d~~~l~~~~-~~~--~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~---~~di~~~s~  198 (265)
                         |++++++++ .++  +++|+   ++||+|.+.|+++|.++|+ +|+++|+|++|+.|........   ..|+.+.|+
T Consensus       112 ~~~d~~~l~~~i~~~~~~tk~v~---~~~~~G~~~~~~~i~~la~-~~~~vi~D~a~a~g~~~~~~~~g~~~~d~~~~S~  187 (377)
T 3ju7_A          112 WYMDKTVLWDKIEELKEEVAIVV---PYATFGSWMNLEEYEELEK-KGVPVVVDAAPGFGLMNGGMHYGQDFSGMIIYSF  187 (377)
T ss_dssp             CSBCHHHHHHHHHHHGGGEEEEC---CBCGGGBCCCCHHHHHHHH-TTCCBEEECTTCTTCEETTEETTTTCSSEEEEEC
T ss_pred             CCcCHHHHHHHHhcCCCCceEEE---EECCCCCccCHHHHHHHHh-cCCEEEEECCCccCCeECCEeccCCCCcEEEEEC
Confidence               899999988 556  88887   6788999999999999999 9999999999998865322222   246766665


Q ss_pred             --ccccccCCCceeeEEEeechhHHHHHHHHHHhc------------cCCCChhHHHHHHhccCchHhhHHHHhhchh
Q 024619          199 --TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE------------GSGLAPFDCWICLRGVKTMALRVEKQQVCFF  262 (265)
Q Consensus       199 --sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  262 (265)
                        +|++++  | .+|+++.+++.+.+....+....            ...+++..+++.+.+++.+..+.++.++++.
T Consensus       188 ~~~K~l~~--g-~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~l~~~~~~~~~~~~  262 (377)
T 3ju7_A          188 HATKPFGI--G-EGGLIYSKNEEDIQRIKRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIATMKKWDDKLKERTRISE  262 (377)
T ss_dssp             BTTSSSCC--B-SCEEEEESCHHHHHHHHHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             CCCCcCCC--C-CcEEEEECCHHHHHHHHHHHhcCCCCCCceeeccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              699964  3 37999888877766655554422            3457778888888888877666666665554

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=99.89  E-value=2.4e-22  Score=175.55  Aligned_cols=156  Identities=23%  Similarity=0.315  Sum_probs=128.6

Q ss_pred             ChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHh-cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC----
Q 024619           54 NPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (265)
Q Consensus        54 ~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~-~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----  127 (265)
                      .+..+++++.+++++|.++.+++++|++|+. ++..+ +++||+|+++.|+|+++..    .++..|.+++.++++    
T Consensus        37 ~~~~~~l~~~la~~~~~~~~i~~~sGt~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~----~~~~~g~~~~~v~~~~~~~  112 (388)
T 1b9h_A           37 GDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMGVGPGTEVIVPAFTFISSSQ----AAQRLGAVTVPVDVDAATY  112 (388)
T ss_dssp             CSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHH----HHHHTTCEEEEECBCTTTC
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCccHHHHH----HHHHcCCEEEEEecCCCcC
Confidence            3678899999999999998999999999986 66777 7899999999999999974    345678899888753    


Q ss_pred             --CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcC---CCCCCccEEEeccc--c
Q 024619          128 --DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR---PLELGADIVMHSAT--K  200 (265)
Q Consensus       128 --d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~---~~~~~~di~~~s~s--K  200 (265)
                        |++++++++.+++++|+   |+||||.+.++++|.++|+++|+++|+|++|+.|....   ....+ |+.+.|||  |
T Consensus       113 ~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~l~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~-~i~~~S~s~~K  188 (388)
T 1b9h_A          113 NLDPEAVAAAVTPRTKVIM---PVHMAGLMADMDALAKISADTGVPLLQDAAHAHGARWQGKRVGELD-SIATFSFQNGK  188 (388)
T ss_dssp             CBCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGGSS-SCEEEECCTTS
T ss_pred             CCCHHHHHHhcCcCceEEE---EeCCccCcCCHHHHHHHHHHcCCEEEEecchhcCCccCCeeccccc-ceEEEEccCCC
Confidence              79999999988888877   89999999999999999999999999999999766431   11222 67777877  7


Q ss_pred             ccccCCCceeeEEEeechhH
Q 024619          201 FIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       201 ~~~g~~g~~~G~v~~~~~~~  220 (265)
                      +++|+   ++|+++.+++.+
T Consensus       189 ~l~g~---~~G~~~~~~~~~  205 (388)
T 1b9h_A          189 LMTAG---EGGAVVFPDGET  205 (388)
T ss_dssp             SSCSS---SCEEEEECTTCH
T ss_pred             cccCC---CeEEEEECCHHH
Confidence            77442   579998887644

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=99.89  E-value=1.4e-22  Score=177.82  Aligned_cols=161  Identities=24%  Similarity=0.212  Sum_probs=131.9

Q ss_pred             hhHHHHHHHHHhHhCCC-c-eEEecchHHHHH-HHHHh---cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-
Q 024619           55 PTRDALESLLAKLDKAD-R-ALCFTSGMAALA-AVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-  127 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~-~-~i~~~~g~~al~-~~~~~---~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-  127 (265)
                      +..+++++.+++++|.+ + ++++++|++++. ++..+   +++||+|+++.|+|+++...+...++..|.+++.++.+ 
T Consensus        69 ~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~  148 (406)
T 3cai_A           69 AVLDAAREAVADLVNADPGGVVLGADRAVLLSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDI  148 (406)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCT
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEeCChHHHHHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCc
Confidence            45889999999999987 4 445555568886 44555   68999999999999988766644445568899999875 


Q ss_pred             -----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEeccccc
Q 024619          128 -----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKF  201 (265)
Q Consensus       128 -----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~  201 (265)
                           |++++++++.+++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.+... .....+.|++++|+||+
T Consensus       149 ~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~  228 (406)
T 3cai_A          149 ETGELPTWQWESLISKSTRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRLLDIRETDADVVTVNAHAW  228 (406)
T ss_dssp             TTCCCCGGGHHHHCCTTEEEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTTCCCCHHHHCCSEEEEEGGGG
T ss_pred             ccCCcCHHHHHHHhCCCceEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCCCchhcCCCEEEeehhhh
Confidence                 899999999989999999999999999999999999999999999999999977653 22334789999999998


Q ss_pred             cccCCCceee-EEEeechh
Q 024619          202 IAGHSDVMAG-VLAVKGER  219 (265)
Q Consensus       202 ~~g~~g~~~G-~v~~~~~~  219 (265)
                      + ||.   +| +++++++.
T Consensus       229 ~-g~~---~G~~~~~~~~~  243 (406)
T 3cai_A          229 G-GPP---IGAMVFRDPSV  243 (406)
T ss_dssp             T-SCS---CEEEEESCHHH
T ss_pred             c-CCC---cCeEEEEehHH
Confidence            7 553   56 99887643

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.89  E-value=2.7e-22  Score=172.44  Aligned_cols=158  Identities=16%  Similarity=0.136  Sum_probs=127.9

Q ss_pred             hHHHHHHHHHhHhCCC--ceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-----
Q 024619           56 TRDALESLLAKLDKAD--RALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----  127 (265)
                      ..+++++++++++|.+  .++++++|++++. ++..++++||+|++++|+|+++.  +...++..|.+++.++.+     
T Consensus        35 ~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~  112 (352)
T 1iug_A           35 VFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFAPGERVLVPVYGKFSER--FYEIALEAGLVVERLDYPYGDTP  112 (352)
T ss_dssp             HHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHH--HHHHHHHTTCEEEEEECCTTCCC
T ss_pred             HHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhccCCCCeEEEEeCCchhHH--HHHHHHHcCCceEEEeCCCCCCC
Confidence            4789999999999987  3555556679986 67777899999999999998875  224445678899888763     


Q ss_pred             CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHc--CCEEEEeCCcCCCCCcC-CCCCCccEEEecccccccc
Q 024619          128 DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH--GALLLVDNSIMSPVLSR-PLELGADIVMHSATKFIAG  204 (265)
Q Consensus       128 d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~--~~~li~D~~~~~~~~~~-~~~~~~di~~~s~sK~~~g  204 (265)
                      |++++++   +++++|++++++||||.+.|+++|.++|+++  |+++|+|++|+.+.... ....+.|++++|+||++.+
T Consensus       113 d~~~l~~---~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~  189 (352)
T 1iug_A          113 RPEDVAK---EGYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMC  189 (352)
T ss_dssp             CTTTSCC---SSCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCC
T ss_pred             CHHHHhc---cCCcEEEEEEecCCcceecCHHHHHHHHHhhCCCCEEEEECCccccCcceeccccCeeEEEecCcccccC
Confidence            5666665   6789999999999999999999999999999  99999999998765532 2234689999999998878


Q ss_pred             CCCceeeEEEeechhH
Q 024619          205 HSDVMAGVLAVKGERL  220 (265)
Q Consensus       205 ~~g~~~G~v~~~~~~~  220 (265)
                      +.|  .|+++++++.+
T Consensus       190 ~~g--~G~~~~~~~~~  203 (352)
T 1iug_A          190 PPG--LGFVALSPRAL  203 (352)
T ss_dssp             CSC--EEEEEECHHHH
T ss_pred             CCc--eeEEEECHHHH
Confidence            877  48888877654

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.89  E-value=3.7e-23  Score=178.62  Aligned_cols=204  Identities=15%  Similarity=0.074  Sum_probs=143.0

Q ss_pred             ccCCCCCCCCCCCCeeeccccccCCCC--CCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHhcCC
Q 024619           16 FSNEFDPYGALSTPLYQTATFKQPSAT--ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGT   92 (265)
Q Consensus        16 ~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~~~~   92 (265)
                      |+ +|||+|+.++|.+...........  ......|+..  +...++++++++++|.+..+++++|++++. ++..+.++
T Consensus         9 ~~-~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~--~~~~~l~~~la~~~~~~~~i~~~~G~~a~~~al~~~~~~   85 (357)
T 3lws_A            9 FQ-QTTGQISGHGKRNVGVLKTAFAAVADEMASDQYGTG--AIIEPFEQKFADVLGMDDAVFFPSGTMAQQVALRIWSDE   85 (357)
T ss_dssp             HH-TCSEESSBSSCCBHHHHHHHHTTSCTTCBCEETTEE--TTHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHHH
T ss_pred             HH-hhcccccCCCCCCHHHHHHHHHHhhcccCcccccCC--hHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHHHHhhc
Confidence            66 899999999998875432221111  1122334432  568899999999999998888899998875 67777888


Q ss_pred             CC--EEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC----CHHHHHhhcCCCceEEEEecCCCCc-ccccc---HHHHH
Q 024619           93 GE--EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLDEVASAIGPWTKLVWVESPTNPR-QQICD---IRKIA  162 (265)
Q Consensus        93 g~--~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~~~~~~~~i~~~~~~np~-G~~~~---l~~i~  162 (265)
                      ||  .|+++.+.|...... .......|++++.++.+    |+++++++.  ++++|++++|+||+ |.+.+   +++|+
T Consensus        86 gd~~~vi~~~~~~~~~~~~-~~~~~~~g~~~~~v~~~~~~~d~~~l~~~~--~~~~v~~~~p~np~~G~~~~~~~l~~i~  162 (357)
T 3lws_A           86 TDNRTVAYHPLCHLEIHEQ-DGLKELHPIETILVGAADRLMTLDEIKALP--DIACLLLELPQREIGGVAPAFSELETIS  162 (357)
T ss_dssp             HTCCEEEECTTCHHHHSST-THHHHHSSCEEEECSCTTSCCCHHHHHTCC--SCSEEEEESSBGGGTSBCCCHHHHHHHH
T ss_pred             CCCcEEEecccceeeeecc-chhhhccCcEEEEecCCCCCcCHHHHhcCc--CcceEEEEcccccCCceeCCHHHHHHHH
Confidence            88  677766655433210 01123358888888753    889998873  48999999999998 88864   89999


Q ss_pred             HHHHHcCCEEEEeCCcCC---CCCcC---CCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHH
Q 024619          163 EMAHAHGALLLVDNSIMS---PVLSR---PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN  229 (265)
Q Consensus       163 ~~a~~~~~~li~D~~~~~---~~~~~---~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~  229 (265)
                      ++|++||+++|+|++|..   +..+.   ......|+++.|+||++++|.|   |+++.+++. .+.......
T Consensus       163 ~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~g---g~~~~~~~~-~~~~~~~~~  231 (357)
T 3lws_A          163 RYCRERGIRLHLDGARLFEMLPYYEKTAAEIAGLFDSIYISFYKGLGGIAG---AILAGPAAF-CQTARIWKR  231 (357)
T ss_dssp             HHHHHTTCEEEEEETTHHHHHHHHTCCHHHHHTTSSEEEEESSSTTCCSSC---EEEEECHHH-HHHHHHHHH
T ss_pred             HHHHHcCCEEEEECchhhhhhhhcCCChHHHHhcCCEEEEeccccCCCCce---EEEEcCHHH-HHHHHHHHH
Confidence            999999999999999862   11111   1123468889999999977764   888776644 444443433

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=99.89  E-value=2.7e-22  Score=175.51  Aligned_cols=197  Identities=16%  Similarity=0.089  Sum_probs=137.2

Q ss_pred             eeEeeccCCCCCCCC----CCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhC----CCceEE--ecc
Q 024619           11 TLLMNFSNEFDPYGA----LSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDK----ADRALC--FTS   78 (265)
Q Consensus        11 ~~~~~~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g----~~~~i~--~~~   78 (265)
                      ..+++|+ .++|+.+    .++|.+.......  ......+.|++. |.+ +++++++++....+    .+++++  +++
T Consensus        26 ~~~i~l~-~g~~~~~~~~~~~~~~v~~a~~~~--~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g  102 (396)
T 2q7w_A           26 PGKINLG-IGVYKDETGKTPVLTSVKKAEQYL--LENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPG  102 (396)
T ss_dssp             --CEESS-CCSCCCTTSCCCCCHHHHHHHHHH--HHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESH
T ss_pred             CCceecc-cccccCCCCCccCcHHHHHHHHhh--cCcccccCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEEeccc
Confidence            4689999 7775433    2233333322111  000123467555 664 47777777755432    445555  666


Q ss_pred             hHHHHH-HHHHh--cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC---C----CHHHHHhhcCC---CceEEEE
Q 024619           79 GMAALA-AVTHL--LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT---C----DLDEVASAIGP---WTKLVWV  145 (265)
Q Consensus        79 g~~al~-~~~~~--~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~----d~~~l~~~~~~---~~~~i~~  145 (265)
                      |++|+. ++..+  +.+||+|+++.|+|+++..    .++..|.+++.++.   +    |++++++++.+   +++++++
T Consensus       103 ~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~----~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~  178 (396)
T 2q7w_A          103 GTGALRVAADFLAKNTSVKRVWVSNPSWPNHKS----VFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFH  178 (396)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHH----HHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEE
T ss_pred             chhhHHHHHHHHHHhCCCCEEEEcCCCchhHHH----HHHHcCCceEEEecccCCCCCcCHHHHHHHHHhCCCCCEEEEe
Confidence            678986 44333  5799999999999999874    44557889888887   3    79999998864   4778889


Q ss_pred             ecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc------CC--C--CCCccEEEeccccccccCCCceeeE
Q 024619          146 ESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS------RP--L--ELGADIVMHSATKFIAGHSDVMAGV  212 (265)
Q Consensus       146 ~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~------~~--~--~~~~di~~~s~sK~~~g~~g~~~G~  212 (265)
                      ++|+||||.+.+   +++|+++|+++|+++|+||+|+.....      ..  .  ..+.++++.|+||++ |++|+|+|+
T Consensus       179 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~riG~  257 (396)
T 2q7w_A          179 GCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNF-GLYNERVGA  257 (396)
T ss_dssp             CSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTT-TCGGGCCEE
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEeccccc-cccccccce
Confidence            999999999965   678999999999999999999864432      01  1  124579999999999 778899999


Q ss_pred             EEe
Q 024619          213 LAV  215 (265)
Q Consensus       213 v~~  215 (265)
                      +++
T Consensus       258 ~~~  260 (396)
T 2q7w_A          258 CTL  260 (396)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            986

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=99.89  E-value=7.6e-22  Score=173.61  Aligned_cols=165  Identities=16%  Similarity=0.109  Sum_probs=127.5

Q ss_pred             CCCccCCC-CCh-hHHHHHHHHHhHhCC----Cc-eEEecc-hHHHHH-HHHHhcC--CCCEEEEcCCCCCChHHHHHhh
Q 024619           45 GPYDYTRS-GNP-TRDALESLLAKLDKA----DR-ALCFTS-GMAALA-AVTHLLG--TGEEIVAGDDLYGGTDRLLSRV  113 (265)
Q Consensus        45 ~~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~-~i~~~~-g~~al~-~~~~~~~--~g~~viv~~~~~~~~~~~~~~~  113 (265)
                      ..+.|++. |.+ +++++.+++.+..+.    +. .++++. |++|+. ++..+.+  + |+|++++|+|+.+.    ..
T Consensus        64 ~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~----~~  138 (405)
T 3k7y_A           64 KEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHV----NM  138 (405)
T ss_dssp             CCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHH----HH
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHH----HH
Confidence            46789887 987 599999999766543    22 244454 458886 5566666  8 99999999999997    55


Q ss_pred             cCCCCeEEEeecCC-------CHHHHHhhcC--CCceEEEEecC-CCCcccccc---HHHHHHHHHHcCCEEEEeCCcCC
Q 024619          114 TPKTGVVVKRVNTC-------DLDEVASAIG--PWTKLVWVESP-TNPRQQICD---IRKIAEMAHAHGALLLVDNSIMS  180 (265)
Q Consensus       114 ~~~~g~~~~~~~~~-------d~~~l~~~~~--~~~~~i~~~~~-~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~  180 (265)
                      ++..|.+++.+++.       |++++++++.  ++++++++++| |||||.+.+   +++|+++|++||+++|+||+|..
T Consensus       139 ~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~  218 (405)
T 3k7y_A          139 IESRGFNLKYINFFDYNLIDINYDLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQG  218 (405)
T ss_dssp             HHTTTCEEEEECCEETTTTEECHHHHHHHHHHSCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTT
T ss_pred             HHHcCCeEEEEeccccccCCcCHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCccc
Confidence            57889999998761       7899998885  35678888665 899999965   68899999999999999999975


Q ss_pred             CCCcC------C-----CCCCccEEEeccccccccCCCceeeEEEe
Q 024619          181 PVLSR------P-----LELGADIVMHSATKFIAGHSDVMAGVLAV  215 (265)
Q Consensus       181 ~~~~~------~-----~~~~~di~~~s~sK~~~g~~g~~~G~v~~  215 (265)
                      -.+..      +     ...+..+++.||||.| +.+|+|.|++++
T Consensus       219 l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~l~GlRiG~~~~  263 (405)
T 3k7y_A          219 FGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNM-SLYGERAGALHI  263 (405)
T ss_dssp             TSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTS-CCTTTTEEEEEE
T ss_pred             ccCCCcccchHHHHHHHhcCCcEEEEeeCCccC-CCccccceEEEE
Confidence            43321      0     1124679999999999 778999999864

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=99.89  E-value=9.8e-23  Score=175.61  Aligned_cols=215  Identities=15%  Similarity=0.167  Sum_probs=142.8

Q ss_pred             ceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCC-ceEEe-cchHHHHHHHH
Q 024619           10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD-RALCF-TSGMAALAAVT   87 (265)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~-~~i~~-~~g~~al~~~~   87 (265)
                      +..+++|+...++++  ++|.+.......  .  .....|+..   ...++++.+++++|.+ +.+++ ++|++++.++.
T Consensus        14 g~~~id~~~~~~~~~--~~~~v~~a~~~~--~--~~~~~y~~~---~~~~lr~~la~~~~~~~~~i~~t~g~~~al~~~~   84 (350)
T 3fkd_A           14 SSEIVNFSTTVWTDG--DKDHLEKHLVEN--L--NCIRHYPEP---DAGTLRQMLAKRNSVDNNAILVTNGPTAAFYQIA   84 (350)
T ss_dssp             --CCEECSCCSCCCS--CCHHHHHHHHHT--G--GGGGSCCCT---TCHHHHHHHHHHTTCCGGGEEEESHHHHHHHHHH
T ss_pred             cccEEEccCCCCCCC--CCHHHHHHHHHh--H--hHHhcCCCC---cHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHH
Confidence            367999993334455  334333322111  1  123445443   2257888999999876 44444 55568987544


Q ss_pred             HhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC-CCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHH
Q 024619           88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-CDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAH  166 (265)
Q Consensus        88 ~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~  166 (265)
                      ..+. ||+|+++.|+|+.+.    ..++..|.+++.++. ++.+.+..   +++++|++++|+||||.+.+++++.++++
T Consensus        85 ~~l~-gd~Vi~~~p~~~~~~----~~~~~~g~~~~~v~~~~~~~~~~~---~~~~~v~i~~p~nptG~~~~~~~l~~l~~  156 (350)
T 3fkd_A           85 QAFR-GSRSLIAIPSFAEYE----DACRMYEHEVCFYPSNEDIGEADF---SNMDFCWLCNPNNPDGRLLQRTEILRLLN  156 (350)
T ss_dssp             HHTT-TCEEEEEESCCHHHH----HHHHHTTCEEEEEETTSCGGGSCC---TTCSEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             HHHC-CCEEEEeCCCcHHHH----HHHHHcCCeEEEEecCCccccCcc---CCCCEEEEeCCCCCcCCCCCHHHHHHHHH
Confidence            4433 999999999999887    444667999999998 55444322   67999999999999999999999999998


Q ss_pred             HcC-CEEEEeCCcCCCCCcC------CCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhH
Q 024619          167 AHG-ALLLVDNSIMSPVLSR------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFD  239 (265)
Q Consensus       167 ~~~-~~li~D~~~~~~~~~~------~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (265)
                      .++ .++|+||+|+......      ....+.++++.|+||++ +.+|+++|+++.+++ +.+.+....  .....++..
T Consensus       157 ~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~-~~~G~r~G~~~~~~~-~~~~~~~~~--~~~~~~~~~  232 (350)
T 3fkd_A          157 DHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAY-GIPGLRIGYIVANKD-FMKRVAAFS--TPWAVNALA  232 (350)
T ss_dssp             HCTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHH-SCGGGCCEEEECCHH-HHHHHHTTC--CTTCSCHHH
T ss_pred             hCCCCEEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhc-cCcchheEeEEeCHH-HHHHHHHhC--CCCCCCHHH
Confidence            876 7999999997544321      11335679999999999 667899999998554 434332221  223455555


Q ss_pred             HHHHHh
Q 024619          240 CWICLR  245 (265)
Q Consensus       240 ~~~~~~  245 (265)
                      ++.+.+
T Consensus       233 ~~~~~~  238 (350)
T 3fkd_A          233 IEAAKF  238 (350)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444333

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=99.88  E-value=1.3e-22  Score=177.54  Aligned_cols=158  Identities=18%  Similarity=0.135  Sum_probs=131.5

Q ss_pred             hhHHHHHHHHHhHhCCC--ceEEecchHHHHH-HHHHhc----CCCC-EEEEcCCCCCChHHHHHhhcCCCCeEEEeecC
Q 024619           55 PTRDALESLLAKLDKAD--RALCFTSGMAALA-AVTHLL----GTGE-EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT  126 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~--~~i~~~~g~~al~-~~~~~~----~~g~-~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~  126 (265)
                      +..+++++++++++|.+  .++++++|++|+. ++..++    ++|| +|+++.++|+++...+... +..|.+++.++.
T Consensus        63 ~~~~~l~~~la~~~~~~~~~v~~~~g~t~al~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~-~~~g~~~~~v~~  141 (400)
T 3vax_A           63 RGVERAREYLASTVSAEPDELIFTSGATESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHL-AGRGFEVDFLTP  141 (400)
T ss_dssp             HHHHHHHHHHHHHTTCCGGGEEEESCHHHHHHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHH-HTTTCEEEEECC
T ss_pred             HHHHHHHHHHHHHcCCCCCcEEEeCCHHHHHHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHHH-HhcCCeEEEEcc
Confidence            45889999999999987  4555556679986 566666    8999 9999999999988776443 567999999987


Q ss_pred             C-----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcC-CCCCCccEEEecccc
Q 024619          127 C-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR-PLELGADIVMHSATK  200 (265)
Q Consensus       127 ~-----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~-~~~~~~di~~~s~sK  200 (265)
                      +     |++++++++.+++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.+.... .... .|++++|++|
T Consensus       142 ~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~-~d~~~~s~~K  220 (400)
T 3vax_A          142 GPSGRISVEGVMERLRPDTLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVPGDLTTP-IDMISISGHK  220 (400)
T ss_dssp             CTTCCCCHHHHHTTCCTTEEEEECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSGGGGGSC-CSEEEEETGG
T ss_pred             CCCCCcCHHHHHHhcCCCceEEEEECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCCcChhhc-CcEEEEeHHH
Confidence            5     8999999999999999999999999999999999999999999999999999776542 2233 8999999999


Q ss_pred             ccccCCCceeeEEE-eec
Q 024619          201 FIAGHSDVMAGVLA-VKG  217 (265)
Q Consensus       201 ~~~g~~g~~~G~v~-~~~  217 (265)
                      ++ |+.|+  |+++ +++
T Consensus       221 ~~-g~~g~--g~~~~~~~  235 (400)
T 3vax_A          221 IG-APKGV--GALVTRRR  235 (400)
T ss_dssp             GT-SCSSC--EEEEECBC
T ss_pred             hC-CCCce--EEEEEecc
Confidence            65 67664  7776 666

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=99.88  E-value=2e-22  Score=177.02  Aligned_cols=162  Identities=12%  Similarity=0.141  Sum_probs=133.8

Q ss_pred             hhHHHHHHHHHhHhCCCc--eEEe-cchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC---
Q 024619           55 PTRDALESLLAKLDKADR--ALCF-TSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~--~i~~-~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---  127 (265)
                      ...+++++++++++|.+.  .+++ ++|++++. ++..++++||+|+++.|+|++..  +...++..|.+++.++.+   
T Consensus        46 ~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~  123 (411)
T 3nnk_A           46 HYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAIRPGDKVLVPVFGRFGHL--LCEIARRCRAEVHTIEVPWGE  123 (411)
T ss_dssp             HHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHH--HHHHHHHTTCEEEEEECCTTC
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhcCCCCEEEEecCCchHHH--HHHHHHHcCCeEEEEecCCCC
Confidence            457899999999998773  2444 45678886 77778999999999999997621  125556778999998866   


Q ss_pred             --CHHHHHhhcCC-CceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEeccccccc
Q 024619          128 --DLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIA  203 (265)
Q Consensus       128 --d~~~l~~~~~~-~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~~~  203 (265)
                        |++++++++.+ ++++|++++++||||.+.|+++|.++|++||+++|+|++|+.+... .....+.|+++.|++|++.
T Consensus       124 ~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~d~~~~s~~K~l~  203 (411)
T 3nnk_A          124 VFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQPLAELGEICRRYDALFYTDATASLGGNPLETDVWGLDAVSAGMQKCLG  203 (411)
T ss_dssp             CCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTBTTBCCCTTTTTCSEEECCSTTTTC
T ss_pred             CCCHHHHHHHHhhCCCeEEEEeCCCCCcceeccHHHHHHHHHHcCCEEEEECCcccCCcccchhccCCcEEEecCccccC
Confidence              89999999975 8999999999999999999999999999999999999999877654 3345578999999999977


Q ss_pred             cCCCceeeEEEeechhH
Q 024619          204 GHSDVMAGVLAVKGERL  220 (265)
Q Consensus       204 g~~g~~~G~v~~~~~~~  220 (265)
                      ++.|  .|+++.+++.+
T Consensus       204 ~~~g--~g~~~~~~~~~  218 (411)
T 3nnk_A          204 GPSG--TSPITLSARME  218 (411)
T ss_dssp             CCSS--EEEEEECHHHH
T ss_pred             CCCc--eEEEEECHHHH
Confidence            8776  58888877544

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=99.88  E-value=2.8e-22  Score=175.90  Aligned_cols=227  Identities=16%  Similarity=0.137  Sum_probs=154.1

Q ss_pred             ceeEeeccCCC---CCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-H
Q 024619           10 STLLMNFSNEF---DPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-A   85 (265)
Q Consensus        10 ~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~   85 (265)
                      +.++++|+ ++   +++|..+|.+..+..-....    ..+.+.....+..+++++++++++|.+.++++++|++|+. +
T Consensus        38 g~~~lD~~-~~~~~~~lg~~~p~v~~a~~~~~~~----~~~~~~~~~~~~~~~l~~~la~~~~~~~v~~~~gg~~a~~~a  112 (406)
T 4adb_A           38 GKEYIDFA-GGIAVNALGHAHPELREALNEQASK----FWHTGNGYTNEPVLRLAKKLIDATFADRVFFCNSGAEANEAA  112 (406)
T ss_dssp             CCEEEESS-HHHHTCTTCBTCHHHHHHHHHHHTT----CSCCCTTSCCHHHHHHHHHHHHHSSCSEEEEESSHHHHHHHH
T ss_pred             CCEEEECC-CchhhcccCCCCHHHHHHHHHHHHh----cccccCCcCCHHHHHHHHHHHhhCCCCeEEEeCcHHHHHHHH
Confidence            45689998 55   88998554444443221211    1111122245679999999999999998888888899986 5


Q ss_pred             HHHhcC-------CC-CEEEEcCCCCCChHHHHHhhcC---------CCCeEEEeecCCCHHHHHhhcCCCceEEEEecC
Q 024619           86 VTHLLG-------TG-EEIVAGDDLYGGTDRLLSRVTP---------KTGVVVKRVNTCDLDEVASAIGPWTKLVWVESP  148 (265)
Q Consensus        86 ~~~~~~-------~g-~~viv~~~~~~~~~~~~~~~~~---------~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~  148 (265)
                      +..+..       +| |+|++.+|.|+.+.........         ..+..+..++.+|++++++++.+++++|+++ |
T Consensus       113 l~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~-p  191 (406)
T 4adb_A          113 LKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDINSASALIDDSTCAVIVE-P  191 (406)
T ss_dssp             HHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTTCHHHHHTTCSTTEEEEEEC-S
T ss_pred             HHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCCcHHHHHHHhcCCeEEEEEe-C
Confidence            555543       55 9999999999988544322221         1224566777889999999999899999999 8


Q ss_pred             CCCccccc-----cHHHHHHHHHHcCCEEEEeCCcC-CCCCcCC-----CCCCccEEEeccccccccCCCceeeEEEeec
Q 024619          149 TNPRQQIC-----DIRKIAEMAHAHGALLLVDNSIM-SPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKG  217 (265)
Q Consensus       149 ~np~G~~~-----~l~~i~~~a~~~~~~li~D~~~~-~~~~~~~-----~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~  217 (265)
                      +||+|.+.     ++++|.++|++||+++|+||+|+ .+..+.+     .....|++  |+||+++  +|+++|+++.++
T Consensus       192 ~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~--t~sK~~~--~G~r~G~~~~~~  267 (406)
T 4adb_A          192 IQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDLL--TTAKALG--GGFPVGALLATE  267 (406)
T ss_dssp             EETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGG--TTSCCEEEEECH
T ss_pred             CcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCCCCCEE--Eechhhc--CCCCeEEEEEcH
Confidence            99999764     68999999999999999999996 2222211     12345666  6799995  578999998876


Q ss_pred             hhHHHHHHHHHHhccCCCChhHHHHHHhcc
Q 024619          218 ERLAKELYFLQNAEGSGLAPFDCWICLRGV  247 (265)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  247 (265)
                      +.+ +.+...........++..+..+...+
T Consensus       268 ~~~-~~~~~~~~~~~~~~~~~~~~a~~~~l  296 (406)
T 4adb_A          268 ECA-RVMTVGTHGTTYGGNPLASAVAGKVL  296 (406)
T ss_dssp             HHH-HTCCTTSSCCSSTTCHHHHHHHHHHH
T ss_pred             HHH-hhhccCCcCCCCCCCHHHHHHHHHHH
Confidence            543 32222222233445555555544433

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=99.88  E-value=1.1e-21  Score=171.51  Aligned_cols=165  Identities=22%  Similarity=0.298  Sum_probs=134.1

Q ss_pred             ChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHh-cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC----
Q 024619           54 NPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (265)
Q Consensus        54 ~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~-~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----  127 (265)
                      .+...++++.+++++|.++.+++++|++|+. ++..+ +++||+|+++.|+|+++...+    +..|.+++.++.+    
T Consensus        55 ~~~~~~l~~~la~~~~~~~~i~~~~gt~al~~~l~~~~~~~gd~vl~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~  130 (391)
T 3dr4_A           55 GRFIVEFEKAFADYCGVKHAIACNNGTTALHLALVAMGIGPGDEVIVPSLTYIASANSV----TYCGATPVLVDNDPRTF  130 (391)
T ss_dssp             SHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHTCCTTCEEEEESSSCTHHHHHH----HHTTCEEEEECBCTTTC
T ss_pred             ChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCchHHHHHHH----HHCCCEEEEEecCcccc
Confidence            3678999999999999999999999999986 67777 899999999999999997443    5678899988865    


Q ss_pred             --CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCC--CCCccEEEeccc--cc
Q 024619          128 --DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPL--ELGADIVMHSAT--KF  201 (265)
Q Consensus       128 --d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~--~~~~di~~~s~s--K~  201 (265)
                        |++++++++.+++++|+   ++||||.+.|+++|.++|+++|+++|+|++|+.|......  ..-.|+.+.|++  |+
T Consensus       131 ~~d~~~l~~~~~~~~~~v~---~~n~tG~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~~di~~~S~s~~K~  207 (391)
T 3dr4_A          131 NLDAAKLEALITPRTKAIM---PVHLYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSLGDCATFSFFGNAI  207 (391)
T ss_dssp             SBCGGGSGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECBTTSS
T ss_pred             CcCHHHHHHhcCCCceEEE---EECCCCChhhHHHHHHHHHHcCCEEEEECcccccceECCeeecccCCEEEEECCCCCc
Confidence              78999999988899888   5689999999999999999999999999999987653222  112377777855  99


Q ss_pred             cccCCCceeeEEEeechhHHHHHHHHH
Q 024619          202 IAGHSDVMAGVLAVKGERLAKELYFLQ  228 (265)
Q Consensus       202 ~~g~~g~~~G~v~~~~~~~~~~~~~~~  228 (265)
                      ++++   ++|+++.+++.+.+......
T Consensus       208 l~~g---~gg~~~~~~~~~~~~~~~~~  231 (391)
T 3dr4_A          208 ITTG---EGGMITTNDDDLAAKMRLLR  231 (391)
T ss_dssp             SCCB---SCEEEEESCHHHHHHHHHHH
T ss_pred             CCcC---CeEEEEECCHHHHHHHHHHH
Confidence            9542   37888888776666555444

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=99.88  E-value=2.3e-22  Score=175.70  Aligned_cols=162  Identities=16%  Similarity=0.260  Sum_probs=132.4

Q ss_pred             hhHHHHHHHHHhHhCCCc--eEEe-cchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC----
Q 024619           55 PTRDALESLLAKLDKADR--ALCF-TSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT----  126 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~--~i~~-~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~----  126 (265)
                      +..+++++++++++|.+.  .+++ ++|++|+. ++..++++||+|++++|+|+++.  +...++..|.+++.++.    
T Consensus        52 ~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~  129 (393)
T 2huf_A           52 KIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNLLEDGDVILIGHTGHWGDR--SADMATRYGADVRVVKSKVGQ  129 (393)
T ss_dssp             HHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTTC
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHhCCCCEEEEECCCcchHH--HHHHHHHcCCeeEEEeCCCCC
Confidence            458899999999999863  4555 55669986 66777899999999999998753  22444567889888885    


Q ss_pred             -CCHHHHHhhcCC-CceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcC-CCCCCccEEEeccccccc
Q 024619          127 -CDLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR-PLELGADIVMHSATKFIA  203 (265)
Q Consensus       127 -~d~~~l~~~~~~-~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~-~~~~~~di~~~s~sK~~~  203 (265)
                       .|++++++++.+ ++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+.+.... ....+.|++++|+||+++
T Consensus       130 ~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~sK~l~  209 (393)
T 2huf_A          130 SLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLGGAPMFMDRWEIDAMYTGSQKVLG  209 (393)
T ss_dssp             CCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEECCSSSTTC
T ss_pred             CCCHHHHHHHHhccCCcEEEEEccCCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCcchhhcCccEEEECCCcccc
Confidence             489999999877 89999999999999999999999999999999999999998765432 224478999999999987


Q ss_pred             cCCCceeeEEEeechhH
Q 024619          204 GHSDVMAGVLAVKGERL  220 (265)
Q Consensus       204 g~~g~~~G~v~~~~~~~  220 (265)
                      |++|+  |+++++++.+
T Consensus       210 g~~G~--G~~~~~~~~~  224 (393)
T 2huf_A          210 APPGI--TPVSFSHRAV  224 (393)
T ss_dssp             CCSSC--EEEEECHHHH
T ss_pred             cCCCe--EEEEECHHHH
Confidence            88886  8888876443

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=99.88  E-value=2.1e-22  Score=176.76  Aligned_cols=199  Identities=17%  Similarity=0.190  Sum_probs=129.3

Q ss_pred             eeEeeccCCCCCCCCCCCCeeeccccc-cCCCC-CCCCCccCCC-CChhHHHHHHHHHhH--hC-CC-ceEEec-chHHH
Q 024619           11 TLLMNFSNEFDPYGALSTPLYQTATFK-QPSAT-ENGPYDYTRS-GNPTRDALESLLAKL--DK-AD-RALCFT-SGMAA   82 (265)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~-~~~~~~y~~~-g~~~~~~l~~~l~~~--~g-~~-~~i~~~-~g~~a   82 (265)
                      ..+++|+ .+++. ..++|.+...... ..... ....+.|++. |.   .++++.++++  +| .+ +.++++ +++++
T Consensus        33 ~~~i~l~-~~~~~-~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~---~~lr~~la~~l~~g~~~~~~v~~~~G~~~a  107 (400)
T 3asa_A           33 HTVINLS-IGDTT-QPLNASVAEAFASSIARLSSPTTCRGYGPDFGL---PALRQKLSEDFYRGFVDAKEIFISDGAKVD  107 (400)
T ss_dssp             SCCEECS-SCCCC-CCCCHHHHHHHHHHHHHHTSSSCCCCCCCTTCC---HHHHHHHHHTTSTTSSCGGGEEEESCHHHH
T ss_pred             CceEecc-CCCCC-CCCCHHHHHHHHHHHhcccccccccCCCCCCCC---HHHHHHHHHHHHcCCCCHHHEEEccChHHH
Confidence            4678998 55542 2233333322111 11100 1123456654 44   3455555555  46 33 444445 44588


Q ss_pred             HHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeE-EEeecCCCHHHHHhhcC--CCceEEEEecCCCCcccccc--
Q 024619           83 LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV-VKRVNTCDLDEVASAIG--PWTKLVWVESPTNPRQQICD--  157 (265)
Q Consensus        83 l~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~d~~~l~~~~~--~~~~~i~~~~~~np~G~~~~--  157 (265)
                      +.++..++++||+|++++|+|+++...    ++..|.+ ++.++.++.+.+...+.  +++++|++++|+||||.+.+  
T Consensus       108 l~~~~~~~~~gd~Vl~~~p~y~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~v~l~~p~nptG~~~~~~  183 (400)
T 3asa_A          108 LFRLLSFFGPNQTVAIQDPSYPAYLDI----ARLTGAKEIIALPCLQENAFFPEFPEDTHIDILCLCSPNNPTGTVLNKD  183 (400)
T ss_dssp             HHHHHHHHCSSCEEEEEESCCHHHHHH----HHHTTCSEEEEEECCGGGTTCCCCCTTCCCSEEEEESSCTTTCCCCCHH
T ss_pred             HHHHHHHcCCCCEEEECCCCcHHHHHH----HHHcCCcceEecccchhcCcccChhhccCccEEEEeCCCCCCCCcCCHH
Confidence            876667788999999999999988743    3446776 77777642212211121  57899999999999999976  


Q ss_pred             -HHHHHHHHHHcCCEEEEeCCcCCCCCc-----CCCC----CCccEEEeccccccccCCCceeeEEEeechh
Q 024619          158 -IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLE----LGADIVMHSATKFIAGHSDVMAGVLAVKGER  219 (265)
Q Consensus       158 -l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~~~----~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~  219 (265)
                       +++|+++|+++|+++|+||+|+.....     ....    .+.++++.|+||++ |++|+|+|+++++++.
T Consensus       184 ~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~GlriG~~~~~~~~  254 (400)
T 3asa_A          184 QLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPL-GFAGIRLGWTVIPQEL  254 (400)
T ss_dssp             HHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGG-TTTTCCCEEEECCTTC
T ss_pred             HHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhc-CCcchheeEEeeChhh
Confidence             678999999999999999999832211     1112    23469999999999 6678999999988765

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=99.88  E-value=3.6e-22  Score=174.86  Aligned_cols=231  Identities=14%  Similarity=0.082  Sum_probs=157.9

Q ss_pred             ceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-HH
Q 024619           10 STLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AV   86 (265)
Q Consensus        10 ~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~   86 (265)
                      +.++++|++.  ..++|..+|.+..+..-....    ..+.|.....+..+++++++++++|.+.++++++|++|+. ++
T Consensus        35 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~----~~~~~~~~~~~~~~~l~~~la~~~~~~~v~~~~gg~ea~~~al  110 (395)
T 3nx3_A           35 AKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDK----LLHTSNLYYNENIAAAAKNLAKASALERVFFTNSGTESIEGAM  110 (395)
T ss_dssp             CCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTT----CSCCCTTSBCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHH
T ss_pred             CCEEEECCCcHHhccCCCCCHHHHHHHHHHHHh----ccccccccCCHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHH
Confidence            4578999833  367888665555554322221    2233333345789999999999999888888889999986 44


Q ss_pred             HHhc-------CCCCEEEEcCCCCCChHHHHHh---------hcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCC
Q 024619           87 THLL-------GTGEEIVAGDDLYGGTDRLLSR---------VTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTN  150 (265)
Q Consensus        87 ~~~~-------~~g~~viv~~~~~~~~~~~~~~---------~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~n  150 (265)
                      ..+.       .++++|++.+|.|+++......         .....+.++..++.+|++++++++.+++++|++++++|
T Consensus       111 ~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~~  190 (395)
T 3nx3_A          111 KTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYNDISSVEKLVNEKTCAIILESVQG  190 (395)
T ss_dssp             HHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTTCHHHHHTTCCTTEEEEEEESEEC
T ss_pred             HHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCCCHHHHHHhccCCeEEEEEeCccC
Confidence            4443       4579999999999877532211         12233456777888899999999998899999999999


Q ss_pred             Ccccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CCCCCccEEEeccccccccCCCceeeEEEeechhH
Q 024619          151 PRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       151 p~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                      ++|.+.+    +++|.++|++||+++|+||+|. .+..+.     ......|++  |+||.+++  |+++|+++++++.+
T Consensus       191 ~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d~~--t~sK~~~~--G~~~G~~~~~~~~~  266 (395)
T 3nx3_A          191 EGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPDIM--TSAKALGC--GLSVGAFVINQKVA  266 (395)
T ss_dssp             TTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGTT--TSCCEEEEECHHHH
T ss_pred             CCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCCCCEE--EecccccC--CCceEEEEEchhhh
Confidence            9999876    9999999999999999999987 332221     112234555  67899953  68899998877652


Q ss_pred             HHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619          221 AKELYFLQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      .+.+...........++..++.....++
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~aa~aal~  294 (395)
T 3nx3_A          267 SNSLEAGDHGSTYGGNPLVCAGVNAVFE  294 (395)
T ss_dssp             HHHSCTTCCSSCBSCCHHHHHHHHHHHH
T ss_pred             hhhcCCcccCCCCCCCHHHHHHHHHHHH
Confidence            3333222222334455655555444443

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=99.88  E-value=2.1e-22  Score=176.02  Aligned_cols=161  Identities=17%  Similarity=0.275  Sum_probs=131.1

Q ss_pred             hHHHHHHHHHhHhCCC-c-eEEec-chHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC-----
Q 024619           56 TRDALESLLAKLDKAD-R-ALCFT-SGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----  126 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~-~-~i~~~-~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----  126 (265)
                      ..+++++.+++++|.+ + .++++ +|++++. ++..++++||+|++++|+|+++.  +...++..|.+++.++.     
T Consensus        52 ~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~  129 (396)
T 2ch1_A           52 TMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAER--AVEMSERYGADVRTIEGPPDRP  129 (396)
T ss_dssp             HHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTTSC
T ss_pred             HHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhcCCCCeEEEEcCCcccHH--HHHHHHHcCCceEEecCCCCCC
Confidence            4789999999999987 3 45555 5568886 67777899999999999998873  22345667889988884     


Q ss_pred             CCHHHHHhhcCC-CceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEecccccccc
Q 024619          127 CDLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAG  204 (265)
Q Consensus       127 ~d~~~l~~~~~~-~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~~~g  204 (265)
                      .|++++++++.+ ++++|++++|+||||.+.|+++|.++|+++|+++|+||+|+.+... .....+.|+++.|++|++++
T Consensus       130 ~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~  209 (396)
T 2ch1_A          130 FSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGA  209 (396)
T ss_dssp             CCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCC
T ss_pred             CCHHHHHHHHHhCCCCEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEEccccccCCccchhhcCcCEEEEcCCccccC
Confidence            489999999876 8999999999999999999999999999999999999999976543 22344679999999999988


Q ss_pred             CCCceeeEEEeechhH
Q 024619          205 HSDVMAGVLAVKGERL  220 (265)
Q Consensus       205 ~~g~~~G~v~~~~~~~  220 (265)
                      ++|+  |+++.+++.+
T Consensus       210 ~~g~--g~~~~~~~~~  223 (396)
T 2ch1_A          210 PPGI--TPISISPKAL  223 (396)
T ss_dssp             CSSC--EEEEECHHHH
T ss_pred             CCCe--EEEEECHHHH
Confidence            8875  8888877543

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=99.88  E-value=2.5e-22  Score=175.99  Aligned_cols=193  Identities=16%  Similarity=0.203  Sum_probs=136.9

Q ss_pred             CccCCCCChhHHHHHHHHHhHhCCC-ceEEecch-HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEe
Q 024619           47 YDYTRSGNPTRDALESLLAKLDKAD-RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKR  123 (265)
Q Consensus        47 ~~y~~~g~~~~~~l~~~l~~~~g~~-~~i~~~~g-~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~  123 (265)
                      ..|++.  ....++++.+++++|.+ +.+++++| ++++. ++..++++||+|+++.|+|+++..    .++..|.+++.
T Consensus        68 ~~y~~~--~~~~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~----~~~~~g~~~~~  141 (397)
T 2zyj_A           68 LQYSPT--EGYAPLRAFVAEWIGVRPEEVLITTGSQQALDLVGKVFLDEGSPVLLEAPSYMGAIQ----AFRLQGPRFLT  141 (397)
T ss_dssp             TSCCCT--TCCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH----HHHTTCCEEEE
T ss_pred             hCCCCC--CCCHHHHHHHHHHhCCChhhEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHH----HHHHcCCEEEe
Confidence            355544  22455666666666764 44555555 58886 677778999999999999998874    44567888888


Q ss_pred             ecCC----CHHHHHhhcCC-CceEE-EEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc-C----CCCC
Q 024619          124 VNTC----DLDEVASAIGP-WTKLV-WVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-R----PLEL  189 (265)
Q Consensus       124 ~~~~----d~~~l~~~~~~-~~~~i-~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~-~----~~~~  189 (265)
                      ++.+    |++++++++.+ ++++| ++++|+||||.+.+   +++|+++|+++|+++|+||+|+.+.+. .    ....
T Consensus       142 ~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~  221 (397)
T 2zyj_A          142 VPAGEEGPDLDALEEVLKRERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFEL  221 (397)
T ss_dssp             EEEETTEECHHHHHHHHHHCCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHH
T ss_pred             cCcCCCCCCHHHHHHHHhhcCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhh
Confidence            8753    78999988875 78887 57999999999976   459999999999999999999875442 1    1112


Q ss_pred             ------CccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619          190 ------GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       190 ------~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                            +.++++.|+||++ + +|+++|+++++++ +.+.+...........++..+..+.+.++
T Consensus       222 ~~~~~~~~~i~~~s~sK~~-~-~G~r~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~~l~  283 (397)
T 2zyj_A          222 AREAGYPGVIYLGSFSKVL-S-PGLRVAFAVAHPE-ALQKLVQAKQGADLHTPMLNQMLVHELLK  283 (397)
T ss_dssp             HHHHTCCCEEEEEESTTTT-C-GGGCCEEEECCHH-HHHHHHHHHHHHHSSCCHHHHHHHHHHHT
T ss_pred             CcccCCCeEEEEecccccc-c-ccceeEEEecCHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence                  3459999999999 5 7899999998764 44444443333333445555554444444

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=99.88  E-value=1.5e-22  Score=176.40  Aligned_cols=161  Identities=14%  Similarity=0.065  Sum_probs=130.0

Q ss_pred             hHHHHHHHHHhHhCCC--ceEEecchHHHHH-HHHHhcCC-------------CCEEEEcCCCCCChHHHHHhhcCCCCe
Q 024619           56 TRDALESLLAKLDKAD--RALCFTSGMAALA-AVTHLLGT-------------GEEIVAGDDLYGGTDRLLSRVTPKTGV  119 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~~i~~~~g~~al~-~~~~~~~~-------------g~~viv~~~~~~~~~~~~~~~~~~~g~  119 (265)
                      ..+++++++++++|.+  +++++++|++|+. ++..+..+             ||+|+++.|+|+++...    ++..|.
T Consensus        70 ~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~----~~~~g~  145 (397)
T 3f9t_A           70 LEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKG----REMMDL  145 (397)
T ss_dssp             HHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHH----HHHHTC
T ss_pred             HHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhHHHHH----HHHcCc
Confidence            4788999999999876  3467777778885 66666554             99999999999998744    455688


Q ss_pred             EEEeecCC-----CHHHHHhhcCC-CceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcC--------
Q 024619          120 VVKRVNTC-----DLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR--------  185 (265)
Q Consensus       120 ~~~~~~~~-----d~~~l~~~~~~-~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~--------  185 (265)
                      +++.++.+     |++++++++.+ ++++|++++|+||||.+.|+++|.++|++||+++|+||+|+.+.++.        
T Consensus       146 ~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~  225 (397)
T 3f9t_A          146 EYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKK  225 (397)
T ss_dssp             EEEEECBCTTSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCT
T ss_pred             eeEEEeeCCCCcCCHHHHHHHHhhcCCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhcccccccc
Confidence            99999876     89999999987 89999999999999999999999999999999999999998544310        


Q ss_pred             ----CCCC--CccEEEeccccccccCCCceeeEEEeechhHHH
Q 024619          186 ----PLEL--GADIVMHSATKFIAGHSDVMAGVLAVKGERLAK  222 (265)
Q Consensus       186 ----~~~~--~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~  222 (265)
                          +...  +.|+++.|++|+++++.  ++|+++.+++.+.+
T Consensus       226 ~~~~~~~~~~~~~~~~~s~~K~~~~~~--~~g~~~~~~~~~~~  266 (397)
T 3f9t_A          226 GVNYKFDFSLGVDSITIDPHKMGHCPI--PSGGILFKDIGYKR  266 (397)
T ss_dssp             TCCCCCSGGGTCSEEECCTTTTTCCCS--SCEEEEESSGGGGG
T ss_pred             cccccccccccCCeEEEccccccCCCC--CceEEEEeCHHHHH
Confidence                1111  78999999999986554  46888777765543

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=99.88  E-value=3.7e-22  Score=176.50  Aligned_cols=194  Identities=16%  Similarity=0.080  Sum_probs=134.9

Q ss_pred             CCccCCC-CChhHHHHHHHHHhHhCCC-ceEEecch-HHHH--HHH-HHhcCC------------CCEEEEcCCCCCChH
Q 024619           46 PYDYTRS-GNPTRDALESLLAKLDKAD-RALCFTSG-MAAL--AAV-THLLGT------------GEEIVAGDDLYGGTD  107 (265)
Q Consensus        46 ~~~y~~~-g~~~~~~l~~~l~~~~g~~-~~i~~~~g-~~al--~~~-~~~~~~------------g~~viv~~~~~~~~~  107 (265)
                      .+.|++. |.+   ++++.++++++.+ +.+++++| ++++  .++ ..+..+            +|+|++++|+|+.+.
T Consensus        69 ~~~Y~~~~G~~---~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~  145 (422)
T 3d6k_A           69 CRNYGGLLGIA---DIRELWAEALGLPADLVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHF  145 (422)
T ss_dssp             TTSSCCSSCCH---HHHHHHHHHHTCCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHH
T ss_pred             hhCCCCCCCCH---HHHHHHHHHhCCChhHEEEecchHHHHHHHHHHHHhcCcccccccccccCCCCEEEEeCCccHHHH
Confidence            4567766 554   3444555555665 45666665 5776  443 445555            347999999999987


Q ss_pred             HHHHhhcCCCCeEEEeecC----CCHHHHHhhcCC-CceEEE-EecCCCCccccccHH---HHHHHHH-HcCCEEEEeCC
Q 024619          108 RLLSRVTPKTGVVVKRVNT----CDLDEVASAIGP-WTKLVW-VESPTNPRQQICDIR---KIAEMAH-AHGALLLVDNS  177 (265)
Q Consensus       108 ~~~~~~~~~~g~~~~~~~~----~d~~~l~~~~~~-~~~~i~-~~~~~np~G~~~~l~---~i~~~a~-~~~~~li~D~~  177 (265)
                      .    .++..|.+++.++.    .|++++++++.+ ++++|+ +++|+||||.+.+.+   +|+++|+ ++|+++|+||+
T Consensus       146 ~----~~~~~g~~~~~v~~~~~g~d~~~l~~~l~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~  221 (422)
T 3d6k_A          146 T----ITEHFGFEMINVPMTDEGPDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNA  221 (422)
T ss_dssp             H----HHHHHTCEEEEEEEETTEECHHHHHHHHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECT
T ss_pred             H----HHHHcCCEEEecCCCCCCCCHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECC
Confidence            4    44556888888876    379999998875 789888 689999999998765   8888888 99999999999


Q ss_pred             cCCCCC-c------CC-------CCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHH
Q 024619          178 IMSPVL-S------RP-------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC  243 (265)
Q Consensus       178 ~~~~~~-~------~~-------~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (265)
                      |+...+ .      ..       ...+.++++.|+||+ ++ +|+|+|+++++++. .+.+...........+...+..+
T Consensus       222 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~-~GlriG~~~~~~~l-~~~l~~~~~~~~~~~~~~~q~a~  298 (422)
T 3d6k_A          222 YALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKI-TH-AGSGVSFFASSKEN-IEWYASHANVRGIGPNKLNQLAH  298 (422)
T ss_dssp             TTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTT-SC-TTSSCEEEECCHHH-HHHHHHHHHHHCSCCCHHHHHHH
T ss_pred             ccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhh-cC-cccceEEEEeCHHH-HHHHHHHHHhhcCCCCHHHHHHH
Confidence            974211 1      11       134678999999998 35 48999999987654 44455555544555666655555


Q ss_pred             HhccCc
Q 024619          244 LRGVKT  249 (265)
Q Consensus       244 ~~~l~~  249 (265)
                      ...++.
T Consensus       299 ~~~l~~  304 (422)
T 3d6k_A          299 AQFFGD  304 (422)
T ss_dssp             HHHHCS
T ss_pred             HHHHhC
Confidence            444443

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=99.80  E-value=2.1e-24  Score=188.99  Aligned_cols=206  Identities=16%  Similarity=0.166  Sum_probs=146.8

Q ss_pred             eEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhC--C--CceEEecchHHHHH-HH
Q 024619           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK--A--DRALCFTSGMAALA-AV   86 (265)
Q Consensus        12 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g--~--~~~i~~~~g~~al~-~~   86 (265)
                      .+++|+ .+++ +..++|.+..+...  . .....+.|+..-..+++++++++.+.+|  .  +.++++++|++++. ++
T Consensus        32 ~~i~l~-~~~~-~~~~~~~v~~a~~~--~-~~~~~~~y~~~~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~  106 (392)
T 3b1d_A           32 QLLPAW-IADM-DFEVMPEVKQAIHD--Y-AEQLVYGYTYASDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAI  106 (392)
Confidence            688898 5665 33344444443211  1 1123455655422357788888877766  2  34455555568886 66


Q ss_pred             HHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC--------CCHHHHHhhcC-CCceEEEEecCCCCcccccc
Q 024619           87 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT--------CDLDEVASAIG-PWTKLVWVESPTNPRQQICD  157 (265)
Q Consensus        87 ~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~d~~~l~~~~~-~~~~~i~~~~~~np~G~~~~  157 (265)
                      ..++++||+|+++.|+|+++.    ..++..|.+++.++.        .|++++++.+. +++++|++++|+||||.+.+
T Consensus       107 ~~~~~~gd~vl~~~p~~~~~~----~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~  182 (392)
T 3b1d_A          107 QAFTKEGEAVLINSPVYPPFA----RSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVENDVKLYLLCNPHNPGGRVWE  182 (392)
Confidence            777899999999999999986    455677888888775        36788888887 67899999999999999975


Q ss_pred             ---HHHHHHHHHHcCCEEEEeCCcCCCCCc-----CCC---C--CCccEEEeccccccccCCCceeeEEEeechhHHHHH
Q 024619          158 ---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPL---E--LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL  224 (265)
Q Consensus       158 ---l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~~---~--~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~  224 (265)
                         +++|+++|+++|+++|+||+|+...+.     ...   .  .+.++++.|+||++ +.+|+++|+++++++.+.+.+
T Consensus       183 ~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~~~~~~~  261 (392)
T 3b1d_A          183 REVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTF-NIAGTKNSYAIIENPTLCAQF  261 (392)
Confidence               899999999999999999999864331     111   1  45679999999999 667799999998765444434


Q ss_pred             HHH
Q 024619          225 YFL  227 (265)
Q Consensus       225 ~~~  227 (265)
                      ...
T Consensus       262 ~~~  264 (392)
T 3b1d_A          262 KHQ  264 (392)
Confidence            333

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=99.88  E-value=5.1e-22  Score=180.70  Aligned_cols=161  Identities=20%  Similarity=0.253  Sum_probs=127.4

Q ss_pred             CCh-hHHHHHHHHHhHhCC------CceEEec-chHHHHH-HHHH-----hcCCCCEEEEcCCCCCChHHHHHhhcCCCC
Q 024619           53 GNP-TRDALESLLAKLDKA------DRALCFT-SGMAALA-AVTH-----LLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (265)
Q Consensus        53 g~~-~~~~l~~~l~~~~g~------~~~i~~~-~g~~al~-~~~~-----~~~~g~~viv~~~~~~~~~~~~~~~~~~~g  118 (265)
                      |.+ .++++++++.+.++.      ++.++++ +|++++. ++..     ++++||+|++++|+|+++.    ..++..|
T Consensus       139 g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~----~~~~~~g  214 (533)
T 3f6t_A          139 CLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPYL----RIPELKD  214 (533)
T ss_dssp             CCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEESSCCHHHH----TSGGGGG
T ss_pred             cHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhccCCcCEEEEcCCCcHHHH----HHHHHcC
Confidence            665 588899998777333      2345445 4568886 5555     7899999999999999886    5566778


Q ss_pred             eEEEeecCC---------CHHHHHhhcCCCceEEEEecCCCCccccccH---HHHHHHHH-HcCCEEEEeCCcCCCCCcC
Q 024619          119 VVVKRVNTC---------DLDEVASAIGPWTKLVWVESPTNPRQQICDI---RKIAEMAH-AHGALLLVDNSIMSPVLSR  185 (265)
Q Consensus       119 ~~~~~~~~~---------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l---~~i~~~a~-~~~~~li~D~~~~~~~~~~  185 (265)
                      .+++.++++         |++++++++.+++++|++++|+||||.+.+.   ++|+++|+ ++|+++|+||+|+......
T Consensus       215 ~~~~~v~~~~~~~~~~~~d~~~l~~~l~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~  294 (533)
T 3f6t_A          215 YELVEVDLHSYEKNDWEIEPNEIEKLKDPSIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNF  294 (533)
T ss_dssp             SEEEEECCCEETTTTSEECHHHHHHHSCTTEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTC
T ss_pred             CeEEEEEecCCcccCCCCCHHHHHHHhCCCCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCc
Confidence            888888753         7999999999999999999999999999775   58888998 5899999999998543321


Q ss_pred             ----CCCCCccEEEeccccccccCCCceeeEEEeech
Q 024619          186 ----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGE  218 (265)
Q Consensus       186 ----~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~  218 (265)
                          ....+.+++++|+||.+ |++|+|+|+++++++
T Consensus       295 ~~~~~~~~~~~i~~~S~SK~~-g~~G~RiG~l~~~~~  330 (533)
T 3f6t_A          295 KSIYSVVPYNTMLVYSYSKLF-GCTGWRLGVIALNEK  330 (533)
T ss_dssp             CCHHHHSGGGEEEEEESHHHH-TCGGGCEEEEEEESS
T ss_pred             cCHhhcCCCCEEEEecCcccC-CCcccceEEEEECcH
Confidence                11225679999999999 678999999999886

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=99.88  E-value=2.5e-21  Score=170.88  Aligned_cols=169  Identities=20%  Similarity=0.210  Sum_probs=135.0

Q ss_pred             cCCC-CCh-hHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHh-cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEee
Q 024619           49 YTRS-GNP-TRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV  124 (265)
Q Consensus        49 y~~~-g~~-~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~-~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~  124 (265)
                      |++. |.+ .++++++.+++++|.++.+++++|++|+. ++..+ +++||+|+++.|+|+++...+    +..|.+++.+
T Consensus        34 ~~~~~g~~~l~~~l~~~la~~~g~~~~i~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~~  109 (418)
T 2c81_A           34 SGYWTGEESMERKFAKAFADFNGVPYCVPTTSGSTALMLALEALGIGEGDEVIVPSLTWIATATAV----LNVNALPVFV  109 (418)
T ss_dssp             TSBCCSSCCHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHH----HHTTCEEEEE
T ss_pred             cCcccCCHHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCccHhHHHHH----HHcCCEEEEE
Confidence            5554 665 59999999999999998999999999986 66777 789999999999999997443    5678899888


Q ss_pred             cCC------CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCC-Cc-CCCCCCccEEEe
Q 024619          125 NTC------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV-LS-RPLELGADIVMH  196 (265)
Q Consensus       125 ~~~------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~-~~-~~~~~~~di~~~  196 (265)
                      +.+      |++++++++.+++++|+++   ||+|...++++|.++|+++|+++|+|++|+.+. +. .....-.|+.+.
T Consensus       110 ~~~~~~~~~d~~~l~~~i~~~~~~v~~~---~~~G~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~  186 (418)
T 2c81_A          110 DVEADTYCIDPQLIKSAITDKTKAIIPV---HLFGSMANMDEINEIAQEHNLFVIEDCAQSHGSVWNNQRAGTIGDIGAF  186 (418)
T ss_dssp             CBCTTTCSBCHHHHGGGCCTTEEEECCB---CCTTCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEE
T ss_pred             ecCCCCCCcCHHHHHHhhCCCCeEEEEe---CCcCCcccHHHHHHHHHHCCCEEEEECcccccCccCCEecccccceEEE
Confidence            764      7999999998889988864   589999999999999999999999999999876 32 111112367777


Q ss_pred             cc--ccccccCCCceeeEEEeechhHHHHHHHH
Q 024619          197 SA--TKFIAGHSDVMAGVLAVKGERLAKELYFL  227 (265)
Q Consensus       197 s~--sK~~~g~~g~~~G~v~~~~~~~~~~~~~~  227 (265)
                      |+  +|++ ++ | ++|+++.+++.+.+.+...
T Consensus       187 s~s~~K~~-~~-g-~~g~~~~~~~~l~~~~~~~  216 (418)
T 2c81_A          187 SCQQGKVL-TA-G-EGGIIVTKNPRLFELIQQL  216 (418)
T ss_dssp             ECCTTSSS-CS-S-SCEEEEESCHHHHHHHHHH
T ss_pred             eccCCccc-CC-C-CeEEEEECCHHHHHHHHHH
Confidence            77  9999 45 5 6899988655554444433

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.88  E-value=1.4e-22  Score=177.30  Aligned_cols=230  Identities=13%  Similarity=0.113  Sum_probs=150.6

Q ss_pred             ceeEeeccCCC--CCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-HH
Q 024619           10 STLLMNFSNEF--DPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AV   86 (265)
Q Consensus        10 ~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~   86 (265)
                      +.++++|++..  ..+|..+|.+..+..-....    ..+.+.....+..+++++++++++|.+.++++++|++|+. ++
T Consensus        35 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~----~~~~~~~~~~~~~~~l~~~la~~~g~~~v~~~~~gt~a~~~al  110 (392)
T 3ruy_A           35 GNRYMDLLSAYSAVNQGHRHPKIINALIDQANR----VTLTSRAFHSDQLGPWYEKVAKLTNKEMVLPMNTGAEAVETAI  110 (392)
T ss_dssp             CCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTT----CSCCCTTSEETTHHHHHHHHHHHHTCSEEEEESSHHHHHHHHH
T ss_pred             CCEEEEcCCChhhhccCCCCHHHHHHHHHHHHh----ccccccccCCHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHH
Confidence            45788887321  22555444444443222211    1111111233579999999999999888888899999986 55


Q ss_pred             HHhcCC----------CCEEEEcCCCCCChHHHHHhhcCCC---------CeEEEeecCCCHHHHHhhcCCCceEEEEec
Q 024619           87 THLLGT----------GEEIVAGDDLYGGTDRLLSRVTPKT---------GVVVKRVNTCDLDEVASAIGPWTKLVWVES  147 (265)
Q Consensus        87 ~~~~~~----------g~~viv~~~~~~~~~~~~~~~~~~~---------g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~  147 (265)
                      ..+..+          +|+|++..++|++............         ...+..++..|++++++++.+++++|++++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~  190 (392)
T 3ruy_A          111 KTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYGDLEALKAAITPNTAAFILEP  190 (392)
T ss_dssp             HHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECTTCHHHHHHHCCTTEEEEEECS
T ss_pred             HHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCcccHHHHHHHhccCeEEEEEeC
Confidence            544432          6799999999987754432221110         113556677799999999998999999999


Q ss_pred             CCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CCCCCccEEEeccccccccCCC-ceeeEEEee
Q 024619          148 PTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATKFIAGHSD-VMAGVLAVK  216 (265)
Q Consensus       148 ~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~~~~~di~~~s~sK~~~g~~g-~~~G~v~~~  216 (265)
                      ++||||.+.|    +++|.++|++||+++|+||+|+ .+..+.     ......|++  ++||+++|  | +++|+++++
T Consensus       191 ~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~--~~SK~l~g--G~~~~G~~~~~  266 (392)
T 3ruy_A          191 IQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVTPDMY--ILGKALGG--GVFPISCAAAN  266 (392)
T ss_dssp             SBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT--TTSCCEEEEEC
T ss_pred             ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhccCCCCCEE--EEchhhhC--ChhhhEEEEEC
Confidence            9999999998    9999999999999999999995 222221     112345766  56799854  5 788999887


Q ss_pred             chhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619          217 GERLAKELYFLQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      ++.+ +.+...........++..++.+...++
T Consensus       267 ~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~l~  297 (392)
T 3ruy_A          267 RDIL-GVFEPGSHGSTFGGNPLACAVSIAALE  297 (392)
T ss_dssp             HHHH-TTCCTTSSCCSSTTCHHHHHHHHHHHH
T ss_pred             HHHH-hhhccCCcCCCCCCCHHHHHHHHHHHH
Confidence            6443 322222233334555555555444443

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=99.88  E-value=3.6e-22  Score=176.42  Aligned_cols=187  Identities=16%  Similarity=0.106  Sum_probs=135.0

Q ss_pred             Ccc-CCC-CChhHHHHHHHHHhHhCCC-ceEEecch-HHHHH---HHHHhcC--C---------CCEEEEcCCCCCChHH
Q 024619           47 YDY-TRS-GNPTRDALESLLAKLDKAD-RALCFTSG-MAALA---AVTHLLG--T---------GEEIVAGDDLYGGTDR  108 (265)
Q Consensus        47 ~~y-~~~-g~~~~~~l~~~l~~~~g~~-~~i~~~~g-~~al~---~~~~~~~--~---------g~~viv~~~~~~~~~~  108 (265)
                      +.| ++. |.   .++++.++++++.+ +.+++++| ++++.   ++..+++  +         ||+|++++|+|+.+..
T Consensus        63 ~~Yp~~~~g~---~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~  139 (423)
T 3ez1_A           63 RNYPGGVAGL---PSARALFAGYLDVKAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFL  139 (423)
T ss_dssp             TSSCSCTTCC---HHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHH
T ss_pred             hCCCCCCCCh---HHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHH
Confidence            567 554 44   45556666667765 45555555 58884   5566677  7         5999999999998874


Q ss_pred             HHHhhcCCCCeEEEeecCC----CHHHHHhhc--CCCceEEEE-ecCCCCccccccHH---HHHHHH-HHcCCEEEEeCC
Q 024619          109 LLSRVTPKTGVVVKRVNTC----DLDEVASAI--GPWTKLVWV-ESPTNPRQQICDIR---KIAEMA-HAHGALLLVDNS  177 (265)
Q Consensus       109 ~~~~~~~~~g~~~~~~~~~----d~~~l~~~~--~~~~~~i~~-~~~~np~G~~~~l~---~i~~~a-~~~~~~li~D~~  177 (265)
                          .++..|.+++.++.+    |++++++++  .+++++|++ ++|+||||.+.+.+   +|+++| +++|+++|+||+
T Consensus       140 ----~~~~~g~~~~~v~~~~~g~d~~~l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~  215 (423)
T 3ez1_A          140 ----LLQTLGFELLTVDMQSDGPDVDAVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDA  215 (423)
T ss_dssp             ----HHHHHTCEEEEEEEETTEECHHHHHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECT
T ss_pred             ----HHHHcCCEEEeccCCCCCCCHHHHHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECC
Confidence                445678888888764    899999998  578999875 58999999998765   888888 999999999999


Q ss_pred             cCCCCCcC--------C-------CCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHH
Q 024619          178 IMSPVLSR--------P-------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI  242 (265)
Q Consensus       178 ~~~~~~~~--------~-------~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (265)
                      |+...+..        .       ...+.++++.|+||++ + +|+++|+++.+++ +.+.+...........+...+..
T Consensus       216 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~-~-~G~r~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a  292 (423)
T 3ez1_A          216 YRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKIT-F-AGAGLGFVASSED-NIRWLSKYLGAQSIGPNKVEQAR  292 (423)
T ss_dssp             TSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTS-C-SSSSCEEEEECHH-HHHHHHHHHHHSCSCCCHHHHHH
T ss_pred             cchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhc-c-CCcceEEEEeCHH-HHHHHHHHHhhhccCCCHHHHHH
Confidence            98432211        1       1346789999999984 4 4789999988775 44545555555555566555444


Q ss_pred             H
Q 024619          243 C  243 (265)
Q Consensus       243 ~  243 (265)
                      +
T Consensus       293 ~  293 (423)
T 3ez1_A          293 H  293 (423)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=99.88  E-value=1.1e-21  Score=172.73  Aligned_cols=198  Identities=15%  Similarity=0.084  Sum_probs=136.6

Q ss_pred             eeEeeccCCCCCCCC----CCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhC----CCceEE--ecc
Q 024619           11 TLLMNFSNEFDPYGA----LSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDK----ADRALC--FTS   78 (265)
Q Consensus        11 ~~~~~~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g----~~~~i~--~~~   78 (265)
                      ..+++|+ .++|+.+    .++|.+......... .....+.|++. |.+ +++++.+++...+|    .+++++  +++
T Consensus        30 ~~~i~l~-~g~~~~~~~~~~~~~~v~~a~~~~~~-~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~g  107 (412)
T 1ajs_A           30 PRKVNLG-VGAYRTDDCQPWVLPVVRKVEQRIAN-NSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLG  107 (412)
T ss_dssp             TTCEECC-SCCCCCTTSCCCCCHHHHHHHHHHHT-CTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEH
T ss_pred             CCceeec-cceecCCCCCccccHHHHHHHHHhhh-ChhhccCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCC
Confidence            4578999 6665332    222333333211110 11134567655 654 47777777655433    345666  666


Q ss_pred             hHHHHHHH---HHhcCCC-----CEEEEcCCCCCChHHHHHhhcCCCCeE-EEeecC---C----CHHHHHhhcCC---C
Q 024619           79 GMAALAAV---THLLGTG-----EEIVAGDDLYGGTDRLLSRVTPKTGVV-VKRVNT---C----DLDEVASAIGP---W  139 (265)
Q Consensus        79 g~~al~~~---~~~~~~g-----~~viv~~~~~~~~~~~~~~~~~~~g~~-~~~~~~---~----d~~~l~~~~~~---~  139 (265)
                      |++|+.++   ..++++|     |+|+++.|+|+++...    ++..|.+ ++.++.   +    |++++++++.+   +
T Consensus       108 g~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~----~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~  183 (412)
T 1ajs_A          108 GTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGV----FTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEF  183 (412)
T ss_dssp             HHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHH----HHHTTCSCEEEEECEETTTTEECHHHHHHHHHHSCTT
T ss_pred             cHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHH----HHHcCCceeEEEeeecCCCCccCHHHHHHHHHhCCCC
Confidence            67998633   3457899     9999999999998744    4556777 777775   2    78999888753   6


Q ss_pred             ceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc----C---C--C--CCCccEEEeccccccccC
Q 024619          140 TKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----R---P--L--ELGADIVMHSATKFIAGH  205 (265)
Q Consensus       140 ~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~----~---~--~--~~~~di~~~s~sK~~~g~  205 (265)
                      ++++++++|+||||.+.+   +++|+++|+++|+++|+||+|......    .   .  .  ..+.++++.|+||.+ |+
T Consensus       184 ~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~  262 (412)
T 1ajs_A          184 SIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNF-GL  262 (412)
T ss_dssp             CEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTS-CC
T ss_pred             cEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEEEeccccc-CC
Confidence            788889999999999964   678999999999999999998744332    1   1  1  123459999999999 67


Q ss_pred             CCceeeEEEe
Q 024619          206 SDVMAGVLAV  215 (265)
Q Consensus       206 ~g~~~G~v~~  215 (265)
                      +|+|.|++++
T Consensus       263 ~G~riG~~~~  272 (412)
T 1ajs_A          263 YNERVGNLTV  272 (412)
T ss_dssp             GGGCEEEEEE
T ss_pred             CCcceEEEEE
Confidence            8899999998

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=99.87  E-value=2.9e-22  Score=174.09  Aligned_cols=190  Identities=16%  Similarity=0.177  Sum_probs=132.9

Q ss_pred             hhHHHHHHHHHhHhCC-CceEEecchHHHHH-HHHH---hc---CCC-CEEEEcCCCCCChHHHHHhhcCC----CCeE-
Q 024619           55 PTRDALESLLAKLDKA-DRALCFTSGMAALA-AVTH---LL---GTG-EEIVAGDDLYGGTDRLLSRVTPK----TGVV-  120 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~-~~~i~~~~g~~al~-~~~~---~~---~~g-~~viv~~~~~~~~~~~~~~~~~~----~g~~-  120 (265)
                      +...++++.+++++|. ++++++++|++|+. ++..   +.   ++| |+|++.+|+|+.+...+......    .+.. 
T Consensus        70 ~~~~~l~~~la~~~g~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~  149 (375)
T 2eh6_A           70 PWQEELAHKLVKHFWTEGKVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEP  149 (375)
T ss_dssp             HHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCS
T ss_pred             HHHHHHHHHHHhhcCCCCeEEEeCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCC
Confidence            5578899999999998 66777777789986 4432   35   788 99999999998876543222111    1222 


Q ss_pred             ----EEeecCCCHHHHHhhcCCCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcC---CCC
Q 024619          121 ----VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR---PLE  188 (265)
Q Consensus       121 ----~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~---~~~  188 (265)
                          +..++..|++++++++.+++++|++++++||||.+.+    +++|.++|+++|+++|+||+|+ .+..+.   ...
T Consensus       150 ~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~  229 (375)
T 2eh6_A          150 LVPGFSYAKLNDIDSVYKLLDEETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQH  229 (375)
T ss_dssp             CCSSEEEECTTCHHHHHTTCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGG
T ss_pred             CCCCceeCCCchHHHHHHHhcCCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhh
Confidence                5666677999999999889999999999999999987    9999999999999999999998 333221   122


Q ss_pred             CC--ccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccCc
Q 024619          189 LG--ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT  249 (265)
Q Consensus       189 ~~--~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  249 (265)
                      .+  .|++  |+||++++  |++.|+++++++.+ +.+...........++..+..+...|+.
T Consensus       230 ~~~~~d~~--s~SK~~~~--g~~~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~  287 (375)
T 2eh6_A          230 FNLKPDVI--ALAKGLGG--GVPIGAILAREEVA-QSFTPGSHGSTFGGNPLACRAGTVVVDE  287 (375)
T ss_dssp             GTCCCSEE--EECGGGGT--TSCCEEEEEEHHHH-TTCCTTSCCCSSTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCEE--EEcccccC--CCCeEEEEEcHHHH-hhhcCCCCCCCCCCCHHHHHHHHHHHHH
Confidence            23  6776  67799953  57889998877533 3222111122233455555544444443

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=99.87  E-value=8.2e-22  Score=171.17  Aligned_cols=162  Identities=14%  Similarity=0.122  Sum_probs=130.3

Q ss_pred             hhHHHHHHHHHhHhCCC---ceEEec-chHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC--
Q 024619           55 PTRDALESLLAKLDKAD---RALCFT-SGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--  127 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~---~~i~~~-~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--  127 (265)
                      +..+++++++++++|.+   +.++++ +|++++. ++..++++||+|++..|.|.+..  +...++..|.+++.++.+  
T Consensus        52 ~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~~~gd~vi~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~  129 (376)
T 3f0h_A           52 STMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCFTKKDKVLVIDGGSFGHR--FVQLCEIHEIPYVALKLEHG  129 (376)
T ss_dssp             HHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHCCTTCCEEEEESSHHHHH--HHHHHHHTTCCEEEEECCTT
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhccCCCCeEEEEeCChhhHH--HHHHHHHcCCceEEEeCCCC
Confidence            45889999999999876   355545 4579986 67778999999999988776543  223455667788777643  


Q ss_pred             ---CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcC-CCCCCccEEEeccccccc
Q 024619          128 ---DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR-PLELGADIVMHSATKFIA  203 (265)
Q Consensus       128 ---d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~-~~~~~~di~~~s~sK~~~  203 (265)
                         |++++++++.+++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.+.... ....+.|+++.|++|+++
T Consensus       130 ~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~d~~~~s~~K~l~  209 (376)
T 3f0h_A          130 KKLTKEKLYEYDNQNFTGLLVNVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLADPFNMNECGADVMITGSQKVLA  209 (376)
T ss_dssp             CCCCHHHHHTTTTSCCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEETTTTTC
T ss_pred             CCCCHHHHHHhhccCceEEEEecccCCcceecCHHHHHHHHHHcCCEEEEEcCccccCccccccccCccEEEecCccccc
Confidence               8999999888899999999999999999999999999999999999999998776542 223468999999999997


Q ss_pred             cCCCceeeEEEeechhH
Q 024619          204 GHSDVMAGVLAVKGERL  220 (265)
Q Consensus       204 g~~g~~~G~v~~~~~~~  220 (265)
                      +++|+  |+++.+++.+
T Consensus       210 ~~~G~--g~~~~~~~~~  224 (376)
T 3f0h_A          210 CPPGI--SVIVLAPRGV  224 (376)
T ss_dssp             CCSSC--EEEEECHHHH
T ss_pred             CCCce--EEEEECHHHH
Confidence            68874  7777776544

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=99.87  E-value=4.8e-22  Score=173.29  Aligned_cols=162  Identities=17%  Similarity=0.234  Sum_probs=131.8

Q ss_pred             hhHHHHHHHHHhHhCCC--c-eEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC----
Q 024619           55 PTRDALESLLAKLDKAD--R-ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT----  126 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~--~-~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~----  126 (265)
                      +..+++++++++++|.+  + ++++++|++++. ++..++++||+|+++.+.|.+..  +...++..|.+++.++.    
T Consensus        56 ~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~  133 (393)
T 3kgw_A           56 QIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLLEPGDSFLTGTNGIWGMR--AAEIADRIGARVHQMIKKPGE  133 (393)
T ss_dssp             HHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHCCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTTC
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcCCCCCEEEEEeCCchhHH--HHHHHHHcCCceEEEeCCCCC
Confidence            45788999999999876  2 445566678886 77778999999999988774321  23555677889888875    


Q ss_pred             -CCHHHHHhhcCC-CceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcC-CCCCCccEEEeccccccc
Q 024619          127 -CDLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR-PLELGADIVMHSATKFIA  203 (265)
Q Consensus       127 -~d~~~l~~~~~~-~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~-~~~~~~di~~~s~sK~~~  203 (265)
                       .|++++++++.+ ++++|++++++||||.+.|+++|.++|++||+++|+||+|+.+.... ....+.|+++.|+||+++
T Consensus       134 ~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~d~~~~s~sK~~~  213 (393)
T 3kgw_A          134 HYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLGGVPIYMDQQGIDIMYSSSQKVLN  213 (393)
T ss_dssp             CCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCCEEEEESSSTTC
T ss_pred             CCCHHHHHHHHhhCCCcEEEEeccCCcchhhccHHHHHHHHHHcCCEEEEECCccccCcccchhhcCCCEEEecCccccc
Confidence             389999999987 89999999999999999999999999999999999999998765542 344578999999999987


Q ss_pred             cCCCceeeEEEeechhH
Q 024619          204 GHSDVMAGVLAVKGERL  220 (265)
Q Consensus       204 g~~g~~~G~v~~~~~~~  220 (265)
                      ++.|  .|+++++++.+
T Consensus       214 ~~~g--~g~~~~~~~~~  228 (393)
T 3kgw_A          214 APPG--ISLISFNDKAK  228 (393)
T ss_dssp             CCSS--CEEEEECHHHH
T ss_pred             CCCc--eeEEEECHHHH
Confidence            7777  58888877554

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=99.87  E-value=2.9e-21  Score=171.61  Aligned_cols=192  Identities=15%  Similarity=0.174  Sum_probs=138.2

Q ss_pred             CccCCC-CCh-hHHHHHHHHHhHhCC----CceEEecchHHHHH-HHHHhcCCCC--------------EEEEc-CCCCC
Q 024619           47 YDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGMAALA-AVTHLLGTGE--------------EIVAG-DDLYG  104 (265)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~g~~al~-~~~~~~~~g~--------------~viv~-~~~~~  104 (265)
                      +.|.+. |.+ +++++++++.+.+|.    ++++++++|++|+. ++..++++||              +|++. .|+|+
T Consensus        77 ~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~  156 (444)
T 3if2_A           77 ANYSNPQGDSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYI  156 (444)
T ss_dssp             HSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCG
T ss_pred             hccCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCcc
Confidence            567766 665 588888888877653    34666666679986 6677788888              78775 99998


Q ss_pred             ChHHHHH--hhcCCCCeEEEeecC----------CCHHHHHhh---cCCCceEEEEecCCCCcccccc---HHHHHHHHH
Q 024619          105 GTDRLLS--RVTPKTGVVVKRVNT----------CDLDEVASA---IGPWTKLVWVESPTNPRQQICD---IRKIAEMAH  166 (265)
Q Consensus       105 ~~~~~~~--~~~~~~g~~~~~~~~----------~d~~~l~~~---~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~  166 (265)
                      .+.....  ......|.+++.++.          .|+++++++   +.+++++|++++|+||||.+.+   +++|+++|+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~  236 (444)
T 3if2_A          157 GYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAK  236 (444)
T ss_dssp             GGTTCCSSSCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred             chhhcccccchhhccCceEEecccccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHH
Confidence            8852110  023446777777663          389999988   6788999999999999999988   899999999


Q ss_pred             HcCCEEEEeCCcCCCCCc------CCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHH
Q 024619          167 AHGALLLVDNSIMSPVLS------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC  240 (265)
Q Consensus       167 ~~~~~li~D~~~~~~~~~------~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (265)
                      +||+++|+||+|+.+...      .+...+.+++++|+||+  +.+|+++|+++.+++.+ ..+...........++..+
T Consensus       237 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~--~~~G~r~G~~~~~~~l~-~~~~~~~~~~~~~~~~~~~  313 (444)
T 3if2_A          237 RYDIPLIIDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSKI--GLPGMRTGIIVADAKVI-EAVSAMNAVVNLAPTRFGA  313 (444)
T ss_dssp             HTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESTTT--TCGGGCCEEEECCHHHH-HHHHHHHHHHHSSCCCHHH
T ss_pred             HCCCEEEEECCCCCcccccccccccccCCCCEEEEechhhc--cCCCCceEEEEECHHHH-HHHHHHHHhccCCCChHHH
Confidence            999999999999853221      11234678999999995  55689999998766544 4444444444444444443


Q ss_pred             H
Q 024619          241 W  241 (265)
Q Consensus       241 ~  241 (265)
                      .
T Consensus       314 ~  314 (444)
T 3if2_A          314 A  314 (444)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.87  E-value=2.6e-21  Score=168.33  Aligned_cols=161  Identities=11%  Similarity=0.118  Sum_probs=126.2

Q ss_pred             hHHHHHHHHHhHhCC------CceEEecchHHHHH-HHHHhc---CCCCEEEEc-CCCCCChHHHHHhhcCCCCeEEEee
Q 024619           56 TRDALESLLAKLDKA------DRALCFTSGMAALA-AVTHLL---GTGEEIVAG-DDLYGGTDRLLSRVTPKTGVVVKRV  124 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~------~~~i~~~~g~~al~-~~~~~~---~~g~~viv~-~~~~~~~~~~~~~~~~~~g~~~~~~  124 (265)
                      ...+++++++++++.      +.++++++|++++. ++..+.   ++||+|++. .+.|+.+.   ...++..|.+++.+
T Consensus        39 ~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~~~~gd~vlv~~~~~~~~~~---~~~~~~~g~~~~~v  115 (385)
T 2bkw_A           39 IFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRF---ADCLRSYGAQVDVV  115 (385)
T ss_dssp             HHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHH---HHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhccCCCCCeEEEEcCCcchHHH---HHHHHHcCCceEEE
Confidence            356677788887765      24556666679986 666676   899999877 44554442   13445678899998


Q ss_pred             cC------CCHHHHHhhcCC-CceEEEEecCCCCccccccHHHHHHHHHHc--CCEEEEeCCcCCCCCc-CCCCCCccEE
Q 024619          125 NT------CDLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAH--GALLLVDNSIMSPVLS-RPLELGADIV  194 (265)
Q Consensus       125 ~~------~d~~~l~~~~~~-~~~~i~~~~~~np~G~~~~l~~i~~~a~~~--~~~li~D~~~~~~~~~-~~~~~~~di~  194 (265)
                      +.      .|++++++++.+ ++++|++++++||||.+.|+++|.++|+++  |+++|+|++|+.+... .....+.|++
T Consensus       116 ~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~  195 (385)
T 2bkw_A          116 RPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFA  195 (385)
T ss_dssp             CCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEE
T ss_pred             ecCCCCCCCCHHHHHHHHhcCCCCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCCccccccccCceEE
Confidence            87      388999998876 799999999999999999999999999999  9999999999877653 2334578999


Q ss_pred             EeccccccccCCCceeeEEEeechhHH
Q 024619          195 MHSATKFIAGHSDVMAGVLAVKGERLA  221 (265)
Q Consensus       195 ~~s~sK~~~g~~g~~~G~v~~~~~~~~  221 (265)
                      ++|+||+++|++|+  |+++++++.+.
T Consensus       196 ~~s~~K~~~~~~G~--G~~~~~~~~~~  220 (385)
T 2bkw_A          196 LTASQKAIGAPAGL--SISLCSSRFMD  220 (385)
T ss_dssp             EEESSSTTCCCSCE--EEEEECHHHHH
T ss_pred             EecCccccccCCcc--eEEEEcHHHHH
Confidence            99999998888885  88888876543

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=99.87  E-value=1.6e-22  Score=177.25  Aligned_cols=199  Identities=13%  Similarity=0.118  Sum_probs=139.2

Q ss_pred             ceeEeeccCCC---CCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-H
Q 024619           10 STLLMNFSNEF---DPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-A   85 (265)
Q Consensus        10 ~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~   85 (265)
                      +..+++|+ ++   +++|..++.+..+..-.... .......|   ..+..+++++.+++++|.+.++++++|++|+. +
T Consensus        39 g~~~ld~~-~~~~~~~lg~~~~~v~~a~~~~~~~-~~~~~~~~---~~~~~~~l~~~la~~~g~~~v~~~~gg~~a~~~a  113 (397)
T 2ord_A           39 GNAYLDFT-SGIAVNVLGHSHPRLVEAIKDQAEK-LIHCSNLF---WNRPQMELAELLSKNTFGGKVFFANTGTEANEAA  113 (397)
T ss_dssp             CCEEEESS-HHHHTCTTCBTCHHHHHHHHHHHHH-CSCCCTTS---EEHHHHHHHHHHHHTTTSCEEEEESSHHHHHHHH
T ss_pred             CCEEEECC-ccccccccCCCCHHHHHHHHHHHHh-cccCcccc---CCHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHH
Confidence            35688997 54   88888444444443211111 11111111   23579999999999999888888888999986 4


Q ss_pred             HHHhcC------C-CCEEEEcCCCCCChHHHHHhhcCCCCeE------------EEeecCCCHHHHHhhcCCCceEEEEe
Q 024619           86 VTHLLG------T-GEEIVAGDDLYGGTDRLLSRVTPKTGVV------------VKRVNTCDLDEVASAIGPWTKLVWVE  146 (265)
Q Consensus        86 ~~~~~~------~-g~~viv~~~~~~~~~~~~~~~~~~~g~~------------~~~~~~~d~~~l~~~~~~~~~~i~~~  146 (265)
                      +..+..      + ++.|++.+|.|++....   .++..|.+            +..++..|++++++++.+++++|+++
T Consensus       114 l~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~---~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~  190 (397)
T 2ord_A          114 IKIARKYGKKKSEKKYRILSAHNSFHGRTLG---SLTATGQPKYQKPFEPLVPGFEYFEFNNVEDLRRKMSEDVCAVFLE  190 (397)
T ss_dssp             HHHHHHHHHHHCTTCCEEEEEBTCCCCSSHH---HHHHSBCHHHHGGGCSCCTTEEEECTTCHHHHHHHCCTTEEEEEEC
T ss_pred             HHHHHHHhhcCCCCCceEEEEcCCcCCCchh---hhhccCChhhccccCCCCCCeeEecCCCHHHHHHHhhcCeEEEEEe
Confidence            554442      5 47899999999765431   12223333            66777789999999998899999999


Q ss_pred             cCCCCccc-c---ccHHHHHHHHHHcCCEEEEeCCcCCC-CCcCCC-----CCCccEEEeccccccccCCCceeeEEEee
Q 024619          147 SPTNPRQQ-I---CDIRKIAEMAHAHGALLLVDNSIMSP-VLSRPL-----ELGADIVMHSATKFIAGHSDVMAGVLAVK  216 (265)
Q Consensus       147 ~~~np~G~-~---~~l~~i~~~a~~~~~~li~D~~~~~~-~~~~~~-----~~~~di~~~s~sK~~~g~~g~~~G~v~~~  216 (265)
                      +|+||||. +   .++++|.++|+++|+++|+||+|+.. ..+.+.     ....|++  |+||+++  +|++.|+++++
T Consensus       191 ~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~--~G~r~G~~~~~  266 (397)
T 2ord_A          191 PIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVL--TTAKGLG--GGVPIGAVIVN  266 (397)
T ss_dssp             SEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGG--TTSCCEEEEEC
T ss_pred             cccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCCCCCee--eeccccC--CCcCeEEEEEc
Confidence            99999999 3   56899999999999999999999721 111111     1236765  7799995  46889999988


Q ss_pred             chhH
Q 024619          217 GERL  220 (265)
Q Consensus       217 ~~~~  220 (265)
                      ++.+
T Consensus       267 ~~~~  270 (397)
T 2ord_A          267 ERAN  270 (397)
T ss_dssp             STTC
T ss_pred             hHhc
Confidence            7643

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.87  E-value=2.2e-21  Score=169.56  Aligned_cols=161  Identities=19%  Similarity=0.258  Sum_probs=131.7

Q ss_pred             hhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHh-cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-----
Q 024619           55 PTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~-~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----  127 (265)
                      +...++++.+++++|.++++++++|++|+. ++..+ +++||+|+++.|+|+++...    ++..|++++.++.+     
T Consensus        39 ~~~~~l~~~la~~~~~~~~~~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~v~~~~~~~~  114 (393)
T 1mdo_A           39 PKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNM----IVLLGANPVMVDVDRDTLM  114 (393)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHH----HHHTTCEEEEECBCTTTCC
T ss_pred             hHHHHHHHHHHHHhCCCcEEEecChHHHHHHHHHHcCCCCCCEEEeCCCccHhHHHH----HHHCCCEEEEEeccCCcCC
Confidence            668899999999999988888888999986 66777 89999999999999988743    45678899888753     


Q ss_pred             -CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCC-ccEEEeccc--cccc
Q 024619          128 -DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELG-ADIVMHSAT--KFIA  203 (265)
Q Consensus       128 -d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~-~di~~~s~s--K~~~  203 (265)
                       |++++++++.+++++|+++   ||+|.+.++++|.++|+++|+++|+|++|+.|........+ .|+++.|+|  |+++
T Consensus       115 ~d~~~l~~~l~~~~~~v~~~---~~~G~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~S~~k~K~l~  191 (393)
T 1mdo_A          115 VTPEHIEAAITPQTKAIIPV---HYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGARGTAIFSFHAIKNIT  191 (393)
T ss_dssp             BCHHHHHHHCCTTEEEECCB---CGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEETTSSSEEEEECCTTSSSC
T ss_pred             CCHHHHHHhcCCCceEEEEe---CCCCCcCCHHHHHHHHHHcCCeEEEECccccCCeECCeecCCCCeEEEeCCCCCccc
Confidence             7899999998889998875   47999999999999999999999999999987543222234 899999999  8884


Q ss_pred             cCCCceeeEEEeechhHHHHHH
Q 024619          204 GHSDVMAGVLAVKGERLAKELY  225 (265)
Q Consensus       204 g~~g~~~G~v~~~~~~~~~~~~  225 (265)
                      +  | ++|+++.+++.+.+.+.
T Consensus       192 ~--~-~~g~~~~~~~~~~~~l~  210 (393)
T 1mdo_A          192 C--A-EGGIVVTDNPQFADKLR  210 (393)
T ss_dssp             S--S-SCEEEEESCHHHHHHHH
T ss_pred             c--c-cceEEEeCCHHHHHHHH
Confidence            3  2 58999887555544443

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=99.87  E-value=6.5e-21  Score=165.30  Aligned_cols=162  Identities=17%  Similarity=0.124  Sum_probs=127.7

Q ss_pred             hhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHh---cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC---
Q 024619           55 PTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~---~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---  127 (265)
                      +..+++++.+++++|.+.++++++|++|+. ++..+   +++||+|+++.|+|+++...+    +..|++++.++.+   
T Consensus        32 ~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~  107 (375)
T 2fnu_A           32 KRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATANML----LESGYTPVFAGIKNDG  107 (375)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHHH----HHTTCEEEECCBCTTS
T ss_pred             hHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHhcccCCCCCEEEECCCccHhHHHHH----HHCCCEEEEeccCCCC
Confidence            568899999999999987888888889986 67777   789999999999999997544    4478999998864   


Q ss_pred             --CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCC--CCCCccEEEeccc--cc
Q 024619          128 --DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRP--LELGADIVMHSAT--KF  201 (265)
Q Consensus       128 --d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~--~~~~~di~~~s~s--K~  201 (265)
                        |++++++++.+++++|+++++   +|.+.|+++|.++|+++|+++|+|++|+.+.....  ...-.|+.+.|+|  |+
T Consensus       108 ~~d~~~l~~~i~~~~~~v~~~~~---tG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~~~i~~~s~s~~K~  184 (375)
T 2fnu_A          108 NIDELALEKLINERTKAIVSVDY---AGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAIKP  184 (375)
T ss_dssp             SBCGGGSGGGCCTTEEEEEEECG---GGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSS
T ss_pred             CCCHHHHHhhcCcCceEEEEeCC---cCCccCHHHHHHHHHHcCCEEEEECccccCCeECCeeccccCCeEEEeCCCCCC
Confidence              789999999888999888776   99999999999999999999999999998765322  1111378888888  99


Q ss_pred             cccCCCceeeEEEeechhHHHHHHH
Q 024619          202 IAGHSDVMAGVLAVKGERLAKELYF  226 (265)
Q Consensus       202 ~~g~~g~~~G~v~~~~~~~~~~~~~  226 (265)
                      + ++ |+ +++++.+++.+.+.+..
T Consensus       185 ~-~~-g~-g~~~~~~~~~~~~~~~~  206 (375)
T 2fnu_A          185 I-TT-AE-GGAVVTNDSELHEKMKL  206 (375)
T ss_dssp             S-CC-SS-CEEEEESCHHHHHHHHH
T ss_pred             c-cc-cC-ceEEEeCCHHHHHHHHH
Confidence            9 55 53 44444344545444433

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=99.87  E-value=3.6e-22  Score=175.00  Aligned_cols=186  Identities=18%  Similarity=0.159  Sum_probs=125.9

Q ss_pred             CCCccCCC-CC-----h-hHHHHHHHHHhHhC----CCceEEecchH-HHHH-HHHHhcCCCC----EEEEcCCCCCChH
Q 024619           45 GPYDYTRS-GN-----P-TRDALESLLAKLDK----ADRALCFTSGM-AALA-AVTHLLGTGE----EIVAGDDLYGGTD  107 (265)
Q Consensus        45 ~~~~y~~~-g~-----~-~~~~l~~~l~~~~g----~~~~i~~~~g~-~al~-~~~~~~~~g~----~viv~~~~~~~~~  107 (265)
                      ....|++. |.     + +++++++++. ..|    .++.+++++|+ +++. ++..++++||    +|++++|+|+.+.
T Consensus        55 ~~~~Y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~  133 (391)
T 3bwn_A           55 LMSYFSDMTNLCWFLEPELEDAIKDLHG-VVGNAATEDRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYV  133 (391)
T ss_dssp             TCSSCSCTTSSSTTSCHHHHHHHHHHHH-HHCSBCCSSSEEEEEEHHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHH
T ss_pred             hhhcCCCCCCcccccCHHHHHHHHHHHH-hcCCCCCCCCeEEEeCChHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHH
Confidence            44668777 65     4 3666666655 333    33467677775 8886 6777889999    9999999999987


Q ss_pred             HHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcC-C
Q 024619          108 RLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR-P  186 (265)
Q Consensus       108 ~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~-~  186 (265)
                      .    .++..|.+++.++.+ .+.++   .+++++|++++|+||||.+.+  +|++.++.+++++|+||+|..+.... .
T Consensus       134 ~----~~~~~g~~~~~~~~d-~~~l~---~~~~k~v~l~~p~NPtG~~~~--~l~~~~~~~~~~ii~De~y~~~~~~~l~  203 (391)
T 3bwn_A          134 E----ETTYVRSGMYKWEGD-AWGFD---KKGPYIELVTSPNNPDGTIRE--TVVNRPDDDEAKVIHDFAYYWPHYTPIT  203 (391)
T ss_dssp             H----HHHTTCBTTEEEEEE-STTCC---CCSCEEEEEESSCTTTCCCCC--CCC-----CCCEEEEECTTCSTTTSCCC
T ss_pred             H----HHHHcCCeEEEecCC-HHHcC---CCCCEEEEECCCCCCCchhHH--HHHHHhhcCCCEEEEeCCCCCCCCCccc
Confidence            4    445667777766643 23332   357899999999999999986  45552233349999999998543211 1


Q ss_pred             CCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHH
Q 024619          187 LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI  242 (265)
Q Consensus       187 ~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (265)
                      ...+.+++++|+||.+ |++|+|.|++++.++.+.+.+...+.......+...+..
T Consensus       204 ~~~~~~i~~~S~SK~~-g~~GlRiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a  258 (391)
T 3bwn_A          204 RRQDHDIMLFTFSKIT-GHAGSRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVR  258 (391)
T ss_dssp             CCBCCSEEEEEHHHHH-SCGGGCEEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred             cCCCCeEEEEechhhc-CCCccceEEEEecCHHHHHHHHHHhcccccCCCHHHHHH
Confidence            1346789999999999 788999999987444455555555544345556554443

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=99.87  E-value=3e-21  Score=169.91  Aligned_cols=191  Identities=18%  Similarity=0.215  Sum_probs=132.8

Q ss_pred             CccCCC-CCh-hHHHHHHHHHhHhCC----CceEEecchHHHHH-HHHHhcCCCC-----EEEEc-CCCCCChHHHHHh-
Q 024619           47 YDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGMAALA-AVTHLLGTGE-----EIVAG-DDLYGGTDRLLSR-  112 (265)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~g~~al~-~~~~~~~~g~-----~viv~-~~~~~~~~~~~~~-  112 (265)
                      +.|++. |.+ +++++++++.+.+|.    ++++++++|++|+. ++..++++||     +|+++ .|+|+.+...+.. 
T Consensus        69 ~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~  148 (417)
T 3g7q_A           69 CNYDGPQGKTALLNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLED  148 (417)
T ss_dssp             HSTTCTTSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----
T ss_pred             eccCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccch
Confidence            367766 664 588888888777653    24555556669996 6677888887     89997 9999888633211 


Q ss_pred             -hcCCCCeEEEeecC------CCHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCC
Q 024619          113 -VTPKTGVVVKRVNT------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPV  182 (265)
Q Consensus       113 -~~~~~g~~~~~~~~------~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~  182 (265)
                       .....+..+..++.      .|+++++  +.+++++|++++|+||||.+.+   +++|+++|++||+++|+||+|+...
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~  226 (417)
T 3g7q_A          149 DLFVSARPNIELLPEGQFKYHVDFEHLH--IGEETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPF  226 (417)
T ss_dssp             CCEEECCCEEEEEGGGEEEEECCGGGCC--CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTT
T ss_pred             hhhccccCcccccCCcccccccCHHHhc--cccCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCcccc
Confidence             11223445555543      2778877  6778999999999999999987   8999999999999999999998532


Q ss_pred             Cc------CCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHH
Q 024619          183 LS------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI  242 (265)
Q Consensus       183 ~~------~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (265)
                      ..      .+...+.++++.|+|| + +.+|+++|+++.+++ +.+.+...........++..+..
T Consensus       227 ~~~~~~~~~~~~~~~~i~~~s~sK-~-~~~G~r~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  289 (417)
T 3g7q_A          227 PGIIFSEARPLWNPNIILCMSLSK-L-GLPGSRCGIIIANDK-TITAIANMNGIISLAPGGMGPAM  289 (417)
T ss_dssp             TCCBCSCCCCCCCTTEEEEEESGG-G-TCTTSCCEEEECCHH-HHHHHHHHHHHHCCCCCSHHHHH
T ss_pred             ccccccccccCCCCCEEEEEechh-c-cCCCcceEEEEeCHH-HHHHHHHhhcceeeCCCcHHHHH
Confidence            11      1223467899999999 5 567899999988664 44545555554444445444433

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=99.87  E-value=8.1e-22  Score=173.53  Aligned_cols=163  Identities=18%  Similarity=0.213  Sum_probs=126.9

Q ss_pred             hhHHHHHHHHHhHhCCC--ceEEecchHHHHH-HHHHhc------CCCCE-EEEcCCCCCChHHHHHhhcCCC--CeEEE
Q 024619           55 PTRDALESLLAKLDKAD--RALCFTSGMAALA-AVTHLL------GTGEE-IVAGDDLYGGTDRLLSRVTPKT--GVVVK  122 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~--~~i~~~~g~~al~-~~~~~~------~~g~~-viv~~~~~~~~~~~~~~~~~~~--g~~~~  122 (265)
                      +..+++++.+++++|.+  .++++++|++++. ++..++      ++||+ |+++.+.|+++...+...++..  |.+++
T Consensus        71 ~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~  150 (416)
T 1qz9_A           71 DLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLR  150 (416)
T ss_dssp             GHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEE
T ss_pred             HHHHHHHHHHHHHcCCCcccEEEeCChhHHHHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEE
Confidence            45889999999999986  4555555568885 556555      89987 5556667776655443333333  88999


Q ss_pred             eecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCC-CCCccEEEeccccc
Q 024619          123 RVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPL-ELGADIVMHSATKF  201 (265)
Q Consensus       123 ~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~-~~~~di~~~s~sK~  201 (265)
                      .++.  ++++++++.+++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.|...... ..+.|++++|++|+
T Consensus       151 ~v~~--~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~  228 (416)
T 1qz9_A          151 LVDS--PEELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKY  228 (416)
T ss_dssp             EESS--GGGHHHHCSTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSST
T ss_pred             EeCc--HHHHHHHhCCCceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEEccccccCcCCChhhcCCCEEEecCccc
Confidence            9987  88999999888999999999999999999999999999999999999999977654222 34689999999999


Q ss_pred             cccCCCceeeEEEeechhH
Q 024619          202 IAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       202 ~~g~~g~~~G~v~~~~~~~  220 (265)
                      +.+++++ .|+++.+++.+
T Consensus       229 l~~g~~~-~g~l~~~~~~~  246 (416)
T 1qz9_A          229 LNGGPGS-QAFVWVSPQLC  246 (416)
T ss_dssp             TCCCTTC-CCEEEECTTTT
T ss_pred             CCCCCCC-eEEEEECHHHH
Confidence            8655543 38988887643

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=99.87  E-value=7.6e-22  Score=172.61  Aligned_cols=197  Identities=15%  Similarity=0.124  Sum_probs=134.1

Q ss_pred             eeEeeccCCCCCCCC----CCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHh-CCCceEE--ecchHH
Q 024619           11 TLLMNFSNEFDPYGA----LSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLD-KADRALC--FTSGMA   81 (265)
Q Consensus        11 ~~~~~~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~-g~~~~i~--~~~g~~   81 (265)
                      ..+++|+ .++|..+    .++|.+..+.....  .....+.|++. |.+ +++++++++.... ..+.+++  +++|++
T Consensus        26 ~~~i~l~-~g~~~~~~~~~~~~~~v~~a~~~~~--~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~~  102 (394)
T 2ay1_A           26 QGKIDLG-VGVYKDATGHTPIMRAVHAAEQRML--ETETTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTG  102 (394)
T ss_dssp             TTCEECC-CCSCCCTTSCCCCCHHHHHHHHHHH--HHCCCCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHH
T ss_pred             ccccccc-cceeeCCCCCccCcHHHHHHHHHhc--CCcccCCCCCCCCcHHHHHHHHHHHhCCCCCcccEEEEecCCchh
Confidence            3579999 7776432    22343433321110  00134567665 554 4666666663321 2234555  666678


Q ss_pred             HHH-HHHHh--cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC---C----CHHHHHhhcCC---CceEEEEecC
Q 024619           82 ALA-AVTHL--LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT---C----DLDEVASAIGP---WTKLVWVESP  148 (265)
Q Consensus        82 al~-~~~~~--~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~----d~~~l~~~~~~---~~~~i~~~~~  148 (265)
                      |+. ++..+  +.+||+|+++.|+|+++...    ++..|.+++.++.   +    |++++++++.+   +++++++++|
T Consensus       103 a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~  178 (394)
T 2ay1_A          103 ALRQALELARMANPDLRVFVSDPTWPNHVSI----MNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCC  178 (394)
T ss_dssp             HHHHHHHHHHHHCTTCCEEEEESCCHHHHHH----HHHHTCCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSS
T ss_pred             HHHHHHHHHHhcCCCCEEEEcCCCChhHHHH----HHHcCCceEEEecccccCCccCHHHHHHHHHhCCCCCEEEEeCCC
Confidence            986 44444  34999999999999998744    3456778888876   3    78999888753   3677888999


Q ss_pred             CCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc------CC--C-C-CCccEEEeccccccccCCCceeeEEEe
Q 024619          149 TNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS------RP--L-E-LGADIVMHSATKFIAGHSDVMAGVLAV  215 (265)
Q Consensus       149 ~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~------~~--~-~-~~~di~~~s~sK~~~g~~g~~~G~v~~  215 (265)
                      +||||.+.+   +++|+++|+++|+++|+||+|+.....      ..  . . .+.+++++|+||++ |++|+|.|++++
T Consensus       179 ~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~riG~~~~  257 (394)
T 2ay1_A          179 HNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNF-GIYRERTGCLLA  257 (394)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTT-TCGGGCEEEEEE
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCC-cCcCCccceEEE
Confidence            999999975   678999999999999999999865432      01  1 1 23468899999999 677899999987

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=99.86  E-value=1.7e-20  Score=165.91  Aligned_cols=163  Identities=21%  Similarity=0.218  Sum_probs=128.5

Q ss_pred             hhHHHHHHHHHhHhCCCceEEecchHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC------C
Q 024619           55 PTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------D  128 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~g~~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------d  128 (265)
                      +...++++.+++++|.++++++++|++++.++...+.+||+|++++|+|+++...    ++..|.+++.++.+      |
T Consensus        52 ~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~l~~l~~gd~Vlv~~~~~~~~~~~----~~~~G~~~~~v~~~~~~~~~d  127 (424)
T 2po3_A           52 PLVREFEERVAGLAGVRHAVATCNATAGLQLLAHAAGLTGEVIMPSMTFAATPHA----LRWIGLTPVFADIDPDTGNLD  127 (424)
T ss_dssp             HHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHHTCCSEEEEESSSCTHHHHH----HHHTTCEEEEECBCTTTSSBC
T ss_pred             HHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCEEEECCCccHHHHHH----HHHcCCEEEEEecCCCcCCcC
Confidence            5688999999999999888888888899974444445789999999999998743    45578899988754      7


Q ss_pred             HHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcC--CCCCCccEEEeccc--ccccc
Q 024619          129 LDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR--PLELGADIVMHSAT--KFIAG  204 (265)
Q Consensus       129 ~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~--~~~~~~di~~~s~s--K~~~g  204 (265)
                      ++++++++.+++++|++++   |+|...++++|.++|+++|+++|+|++|+.+....  +.....|++++|+|  |++++
T Consensus       128 ~~~l~~~i~~~~~~v~~~~---~tG~~~~l~~i~~la~~~~~~li~Dea~~~g~~~~~~~~~~~~di~~~S~sk~K~l~~  204 (424)
T 2po3_A          128 PDQVAAAVTPRTSAVVGVH---LWGRPCAADQLRKVADEHGLRLYFDAAHALGCAVDGRPAGSLGDAEVFSFHATKAVNA  204 (424)
T ss_dssp             HHHHGGGCCTTEEEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCC
T ss_pred             HHHHHHhhCcCCcEEEEEC---CCCCcCCHHHHHHHHHHcCCEEEEECccccCCeECCeecccccCEEEEeCCCCCCccC
Confidence            8999999988899998864   79999999999999999999999999999655321  22222579999998  77743


Q ss_pred             CCCceeeEEEeechhHHHHHHHH
Q 024619          205 HSDVMAGVLAVKGERLAKELYFL  227 (265)
Q Consensus       205 ~~g~~~G~v~~~~~~~~~~~~~~  227 (265)
                         .++|+++.+++.+.+.+...
T Consensus       205 ---~~~G~~v~~~~~l~~~l~~~  224 (424)
T 2po3_A          205 ---FEGGAVVTDDADLAARIRAL  224 (424)
T ss_dssp             ---SSCEEEEESCHHHHHHHHHH
T ss_pred             ---CCCeEEEeCCHHHHHHHHHH
Confidence               46899988854554444433

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=99.86  E-value=1.3e-21  Score=168.07  Aligned_cols=159  Identities=16%  Similarity=0.165  Sum_probs=127.6

Q ss_pred             hHHHHHHHHHhHhCCC---ceEEec-chHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC----
Q 024619           56 TRDALESLLAKLDKAD---RALCFT-SGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT----  126 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~---~~i~~~-~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~----  126 (265)
                      ..+++++++++++|.+   +.++++ +|++|+. ++..+++  |+|+++++.|+++  .+...++..|.+++.++.    
T Consensus        34 ~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~--d~vl~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~  109 (353)
T 2yrr_A           34 VNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLDR--GPVLVLVNGAFSQ--RVAEMAALHGLDPEVLDFPPGE  109 (353)
T ss_dssp             HHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCSC--CCEEEEECSHHHH--HHHHHHHHTTCCEEEEECCTTS
T ss_pred             HHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhcC--CcEEEEcCCCchH--HHHHHHHHcCCceEEEeCCCCC
Confidence            4889999999999974   445554 5568987 4555555  8999999999876  223455667888888875    


Q ss_pred             -CCHHHHHhhcCC-CceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCC-CCCCccEEEeccccccc
Q 024619          127 -CDLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRP-LELGADIVMHSATKFIA  203 (265)
Q Consensus       127 -~d~~~l~~~~~~-~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~-~~~~~di~~~s~sK~~~  203 (265)
                       .|++++++.+.+ ++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.+..... ...+.|+++.|++|++.
T Consensus       110 ~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~  189 (353)
T 2yrr_A          110 PVDPEAVARALKRRRYRMVALVHGETSTGVLNPAEAIGALAKEAGALFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCLS  189 (353)
T ss_dssp             CCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEECCTTSTTC
T ss_pred             CCCHHHHHHHHHhCCCCEEEEEccCCCcceecCHHHHHHHHHHcCCeEEEEcCcccccccccccccCceEEEecCccccc
Confidence             478999998877 899999999999999999999999999999999999999987654322 22367999999999887


Q ss_pred             cCCCceeeEEEeechhH
Q 024619          204 GHSDVMAGVLAVKGERL  220 (265)
Q Consensus       204 g~~g~~~G~v~~~~~~~  220 (265)
                      +++|  .|+++++++.+
T Consensus       190 ~~~g--~G~~~~~~~~~  204 (353)
T 2yrr_A          190 APPG--LAPIAASLEAR  204 (353)
T ss_dssp             CCSS--CEEEEECHHHH
T ss_pred             CCCc--eEEEEECHHHH
Confidence            8777  48998887654

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=99.86  E-value=1.5e-21  Score=172.68  Aligned_cols=228  Identities=17%  Similarity=0.150  Sum_probs=150.8

Q ss_pred             ceeEeeccCCC---CCCCCCCCCeeeccccccCCCCCCCCCccCCC-CChhHHHHHHHHHhHhCCCceEEecchHHHHH-
Q 024619           10 STLLMNFSNEF---DPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLDKADRALCFTSGMAALA-   84 (265)
Q Consensus        10 ~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-   84 (265)
                      +..+++|+ ++   +++|..+|.+..+..-.... ...    +++. ..+.++++++++++++|.+.++++++|++|+. 
T Consensus        56 g~~~lD~~-~~~~~~~lG~~~p~v~~ai~~~~~~-~~~----~~~~~~~~~~~~l~~~la~~~g~~~v~~~~ggteA~~~  129 (420)
T 2pb2_A           56 GKEYIDFA-GGIAVTALGHCHPALVEALKSQGET-LWH----TSNVFTNEPALRLGRKLIDATFAERVLFMNSGTEANET  129 (420)
T ss_dssp             CCEEEESS-HHHHTCTTCBTCHHHHHHHHHHHTT-CCC----CCTTSCCHHHHHHHHHHHHHSSCSEEEEESSHHHHHHH
T ss_pred             CCEEEEcc-ccccccccCCCCHHHHHHHHHHHHh-ccc----ccCccCCHHHHHHHHHHHhhCCCCeEEEeCCHHHHHHH
Confidence            45788997 44   78888554444443322221 111    1112 34679999999999999888888888999986 


Q ss_pred             HHHHhcC-------CC-CEEEEcCCCCCChHHHHHhhcCC---------CCeEEEeecCCCHHHHHhhcCCCceEEEEec
Q 024619           85 AVTHLLG-------TG-EEIVAGDDLYGGTDRLLSRVTPK---------TGVVVKRVNTCDLDEVASAIGPWTKLVWVES  147 (265)
Q Consensus        85 ~~~~~~~-------~g-~~viv~~~~~~~~~~~~~~~~~~---------~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~  147 (265)
                      ++..+..       +| ++|++.+|+|+++..........         ....+..++..|++++++++.+++++|++++
T Consensus       130 al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~le~~i~~~~~~vi~~p  209 (420)
T 2pb2_A          130 AFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFNDLHAVKAVMDDHTCAVVVEP  209 (420)
T ss_dssp             HHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECTTCHHHHHHHCCTTEEEEEECS
T ss_pred             HHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecCCCHHHHHHHhccCceEEEEeC
Confidence            5555543       67 58999999998775332222111         0112566777799999999998999999999


Q ss_pred             CCCCcccc----ccHHHHHHHHHHcCCEEEEeCCcCC-CCCcCC-----CCCCccEEEeccccccccCCCceeeEEEeec
Q 024619          148 PTNPRQQI----CDIRKIAEMAHAHGALLLVDNSIMS-PVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKG  217 (265)
Q Consensus       148 ~~np~G~~----~~l~~i~~~a~~~~~~li~D~~~~~-~~~~~~-----~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~  217 (265)
                      ++|++|.+    .++++|.++|++||+++|+||+|.. +..+..     .....|++  |++|+++  +|++.|++++++
T Consensus       210 ~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~~~~~~~dii--t~sK~l~--~G~~iG~~~~~~  285 (420)
T 2pb2_A          210 IQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPDIL--TSAKALG--GGFPVSAMLTTQ  285 (420)
T ss_dssp             EETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGG--TTSCCEEEEECH
T ss_pred             CcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHHHhcCCCCCeE--Eeccccc--CCCceEEEEEhH
Confidence            99988863    4689999999999999999999952 211211     12346776  6899995  468899999887


Q ss_pred             hhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619          218 ERLAKELYFLQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      + +.+.+...........++..++.+...|+
T Consensus       286 ~-l~~~l~~~~~~~t~~~~~~~~aa~~a~L~  315 (420)
T 2pb2_A          286 E-IASAFHVGSHGSTYGGNPLACAVAGAAFD  315 (420)
T ss_dssp             H-HHTTCC----CCEECCCHHHHHHHHHHHH
T ss_pred             H-HHHhhcCCCcCcccCcCHHHHHHHHHHHH
Confidence            5 33333222223334556666555444443

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=99.86  E-value=8.8e-22  Score=172.34  Aligned_cols=197  Identities=18%  Similarity=0.164  Sum_probs=135.6

Q ss_pred             eeEeeccCCC---CCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCC--CceEEecchHHHHH-
Q 024619           11 TLLMNFSNEF---DPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA--DRALCFTSGMAALA-   84 (265)
Q Consensus        11 ~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~--~~~i~~~~g~~al~-   84 (265)
                      ..+++|+ ++   +++|..++.+..+..-.... .......|   ..+..+++++.++++++.  +.++++++|++|+. 
T Consensus        45 ~~~ld~~-~~~~~~~~g~~~~~v~~a~~~~~~~-~~~~~~~~---~~~~~~~l~~~la~~~~~~~~~v~~~~gg~~a~~~  119 (395)
T 1vef_A           45 NEYIDCV-GGYGVANLGHGNPEVVEAVKRQAET-LMAMPQTL---PTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEA  119 (395)
T ss_dssp             CEEEESS-HHHHTCTTCBTCHHHHHHHHHHHHH-CCCCCTTS---CCHHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHH
T ss_pred             CEEEEcc-CccccccCCCCCHHHHHHHHHHHHh-CCCCcccc---CCHHHHHHHHHHHHhcCCCcCEEEEcCcHHHHHHH
Confidence            4678887 44   67777444444443211111 11111112   346799999999999954  45777777889986 


Q ss_pred             HHHHhc--CCCCEEEEcCCCCCChHHHHHhhcCCCCeE------------EEeecCCCHHHHHhhcCCCceEEEEecCCC
Q 024619           85 AVTHLL--GTGEEIVAGDDLYGGTDRLLSRVTPKTGVV------------VKRVNTCDLDEVASAIGPWTKLVWVESPTN  150 (265)
Q Consensus        85 ~~~~~~--~~g~~viv~~~~~~~~~~~~~~~~~~~g~~------------~~~~~~~d~~~l~~~~~~~~~~i~~~~~~n  150 (265)
                      ++..+.  .+|+.|++.+|.|++....+   ++..|.+            +..++..|++++++++.+++++|++++++|
T Consensus       120 al~~~~~~~~~~~vi~~~~~y~~~~~~~---~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~  196 (395)
T 1vef_A          120 ALKFARAHTGRKKFVAAMRGFSGRTMGS---LSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAVDEETAAVILEPVQG  196 (395)
T ss_dssp             HHHHHHHHHSCCEEEEETTCCCCSSHHH---HHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHHHCCTTEEEEEECSEET
T ss_pred             HHHHHHHHhCCCeEEEEcCCcCCCchhh---hhhcCCcccccccCCCCCCeeEeCCCcHHHHHHHhccCEEEEEEeCccC
Confidence            444442  67899999999997654221   1222332            555666799999999988899999988889


Q ss_pred             Ccccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcCC-----CCCCccEEEeccccccccCCCceeeEEEeechh
Q 024619          151 PRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGER  219 (265)
Q Consensus       151 p~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~~-----~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~  219 (265)
                      |||.+.+    +++|.++|++||+++|+||+|+ .+..+..     .....|++  |+||++++  |++.|+++++++.
T Consensus       197 ~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~--g~~~G~~~~~~~~  271 (395)
T 1vef_A          197 EGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDIL--TLAKALGG--GVPLGVAVMREEV  271 (395)
T ss_dssp             TTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGT--TSSCEEEEEEHHH
T ss_pred             CCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcCCCCCEE--EEcccccC--CCceEEEEehHHH
Confidence            9999887    9999999999999999999998 2211211     12346766  78999954  5788999888753

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=99.86  E-value=3.6e-22  Score=176.80  Aligned_cols=160  Identities=19%  Similarity=0.193  Sum_probs=116.0

Q ss_pred             hHHHHHHHHHhHhCCC--ceEEecchHHHHH-HHHHhc--------CCCCEEEEcCCCCCCh-------------HHHHH
Q 024619           56 TRDALESLLAKLDKAD--RALCFTSGMAALA-AVTHLL--------GTGEEIVAGDDLYGGT-------------DRLLS  111 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~~i~~~~g~~al~-~~~~~~--------~~g~~viv~~~~~~~~-------------~~~~~  111 (265)
                      ..+++++++++++|.+  +++++++|++++. ++..++        ++||+|++..|+|+.+             ...+.
T Consensus        62 ~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~  141 (432)
T 3a9z_A           62 IINTARASLAKMIGGKPQDIIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLE  141 (432)
T ss_dssp             HHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCcCeEEEeCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHH
Confidence            4689999999999986  3555555568886 555554        5899888888888654             22333


Q ss_pred             hhcCCCCeEEEeecCC------CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcC----------CEEEEe
Q 024619          112 RVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHG----------ALLLVD  175 (265)
Q Consensus       112 ~~~~~~g~~~~~~~~~------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~----------~~li~D  175 (265)
                      ..++..|.+++.++.+      |++++++++.+++++|++++|+||||.+.|+++|.++|+++|          +++|+|
T Consensus       142 ~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livD  221 (432)
T 3a9z_A          142 HLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPTTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTD  221 (432)
T ss_dssp             HHHHTTSCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEE
T ss_pred             HHHHhcCcEEEEEecCcccCCcCHHHHHHhccCCceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEE
Confidence            4456678999988863      789999999989999999999999999999999999999999          999999


Q ss_pred             CCcCCCCCcCC-CCCCccEEEeccccccccCCCceeeEEEeechh
Q 024619          176 NSIMSPVLSRP-LELGADIVMHSATKFIAGHSDVMAGVLAVKGER  219 (265)
Q Consensus       176 ~~~~~~~~~~~-~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~  219 (265)
                      ++|+.+..... ...+.|+++.|+||++ |+.   +|+++++++.
T Consensus       222 ea~~~~~~~~~~~~~~~d~~~~s~~K~~-g~~---~G~~~~~~~~  262 (432)
T 3a9z_A          222 AAQALGKRRVDVEDLGVDFLTIVGHKFY-GPR---IGALYVRGVG  262 (432)
T ss_dssp             CTTTTTTSCCCHHHHCCSEEEEEGGGTT-CCS---CEEEEETTBT
T ss_pred             chhhhCCcccChhhcCCCEEEEehhHhc-CCc---ceEEEEcccc
Confidence            99987754322 2346899999999987 553   6999888654

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=99.85  E-value=9.2e-22  Score=168.67  Aligned_cols=212  Identities=8%  Similarity=0.034  Sum_probs=137.9

Q ss_pred             eEeeccCCCCC-CCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhC---CC-c-eEEecchHHHHHH
Q 024619           12 LLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK---AD-R-ALCFTSGMAALAA   85 (265)
Q Consensus        12 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g---~~-~-~i~~~~g~~al~~   85 (265)
                      .+++|+ .+.. ++  ++|.+..+.....  .......|+..+   ..++++.++++++   .+ + ++++++|++++.+
T Consensus        20 ~~i~l~-~~~~~~~--~~~~v~~a~~~~~--~~~~~~~y~~~~---~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~   91 (335)
T 1uu1_A           20 DKTYLA-LNENPFP--FPEDLVDEVFRRL--NSDALRIYYDSP---DEELIEKILSYLDTDFLSKNNVSVGNGADEIIYV   91 (335)
T ss_dssp             CSEEES-SCCCSSC--CCHHHHHHHHHTC--CGGGGGSCCCSS---CHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHH
T ss_pred             cceECC-CCCCCCC--CCHHHHHHHHHHh--hhhhhhcCCCCc---hHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHH
Confidence            578998 4444 33  3333333221111  111234454433   5667777777777   44 4 4455555689875


Q ss_pred             HHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-----CHHHHHhhcCCCceEEEEecCCCCccccccHHH
Q 024619           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRK  160 (265)
Q Consensus        86 ~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~  160 (265)
                      +...+  ||+|+++ |+|+++..    .++..|.+++.++.+     |++++     +++++|++++|+||||.+.+.++
T Consensus        92 ~~~~~--gd~Vl~~-p~y~~~~~----~~~~~g~~~~~v~~~~~~~~d~~~l-----~~~~~v~l~~p~nptG~~~~~~~  159 (335)
T 1uu1_A           92 MMLMF--DRSVFFP-PTYSCYRI----FAKAVGAKFLEVPLTKDLRIPEVNV-----GEGDVVFIPNPNNPTGHVFEREE  159 (335)
T ss_dssp             HHHHS--SEEEECS-SSCHHHHH----HHHHHTCEEEECCCCTTSCCCCCCC-----CTTEEEEEESSCTTTCCCCCHHH
T ss_pred             HHHHh--CCcEEEC-CCcHHHHH----HHHHcCCeEEEeccCCCCCCCHHHc-----CCCCEEEEeCCCCCCCCCCCHHH
Confidence            54444  8999999 99998874    345578899888864     33333     57899999999999999999999


Q ss_pred             HHHHHHHcCCEEEEeCCcCCCCC----cCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCC
Q 024619          161 IAEMAHAHGALLLVDNSIMSPVL----SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA  236 (265)
Q Consensus       161 i~~~a~~~~~~li~D~~~~~~~~----~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~  236 (265)
                      +.++++..| ++|+||+|+....    ......+.++++.|+||++ |++|+|+|+++++++ +.+.+....  .....+
T Consensus       160 l~~l~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~-~~~~l~~~~--~~~~~~  234 (335)
T 1uu1_A          160 IERILKTGA-FVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAF-SLAAQRVGYVVASEK-FIDAYNRVR--LPFNVS  234 (335)
T ss_dssp             HHHHHHTTC-EEEEECTTHHHHCCCCGGGGGTCSSEEEEEESTTTT-TCGGGCCEEEEECHH-HHHHHHHHS--CTTCSC
T ss_pred             HHHHHHhCC-EEEEECcchhhcchhHHHHhhhCCCEEEEecchhhc-CCcccCeEEEEeCHH-HHHHHHHhc--CCCCcC
Confidence            999999888 9999999974221    1112345789999999999 667899999998654 334333322  223455


Q ss_pred             hhHHHHHHhccC
Q 024619          237 PFDCWICLRGVK  248 (265)
Q Consensus       237 ~~~~~~~~~~l~  248 (265)
                      +..+..+.+.++
T Consensus       235 ~~~~~~~~~~l~  246 (335)
T 1uu1_A          235 YVSQMFAKVALD  246 (335)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC
Confidence            555544444443

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.85  E-value=3.3e-20  Score=162.57  Aligned_cols=162  Identities=16%  Similarity=0.134  Sum_probs=129.3

Q ss_pred             hhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHh-cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-----
Q 024619           55 PTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~-~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----  127 (265)
                      +...++++.+++++|.+.++++++|++|+. ++..+ +++||+|+++.|+|+++...+    +..|.+++.++.+     
T Consensus        32 ~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~l~~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~v~~~~~~~~  107 (394)
T 1o69_A           32 EFVNRFEQSVKDYSKSENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPI----CYLKAKPVFIDCDETYNI  107 (394)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTHHH----HHTTCEEEEECBCTTSSB
T ss_pred             hHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHHHHHH----HHcCCEEEEEEeCCCCCc
Confidence            678999999999999988888888889986 66777 899999999999999997554    4478899888854     


Q ss_pred             CHHHHHhhcCC---CceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCC---C-CCccEEEecccc
Q 024619          128 DLDEVASAIGP---WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPL---E-LGADIVMHSATK  200 (265)
Q Consensus       128 d~~~l~~~~~~---~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~---~-~~~di~~~s~sK  200 (265)
                      |++++++++.+   ++++|++++   |+|...++++|.++|+++|+++|+|++|+.+......   . .+.|+..+|.+|
T Consensus       108 d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~K  184 (394)
T 1o69_A          108 DVDLLKLAIKECEKKPKALILTH---LYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNK  184 (394)
T ss_dssp             CHHHHHHHHHHCSSCCCEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTS
T ss_pred             CHHHHHHHHhcccCCceEEEEEC---CCCChhhHHHHHHHHHHcCCEEEEECcCcccceeCCcccccccCcEEEEEeCCc
Confidence            78999988865   789999885   7999999999999999999999999999966543211   1 246677777789


Q ss_pred             ccccCCCceeeEEEeechhHHHHHHH
Q 024619          201 FIAGHSDVMAGVLAVKGERLAKELYF  226 (265)
Q Consensus       201 ~~~g~~g~~~G~v~~~~~~~~~~~~~  226 (265)
                      .++ +.  ++|+++++++.+.+.+..
T Consensus       185 ~l~-~~--~~G~~~~~~~~l~~~l~~  207 (394)
T 1o69_A          185 IIT-TS--GGGMLIGKNKEKIEKARF  207 (394)
T ss_dssp             SSC-CS--SCEEEEESCHHHHHHHHH
T ss_pred             cCC-CC--CceEEEECCHHHHHHHHH
Confidence            884 33  479999875555444433

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=99.85  E-value=3.6e-21  Score=166.06  Aligned_cols=161  Identities=17%  Similarity=0.232  Sum_probs=126.5

Q ss_pred             hhHHHHHHHHHhHhCCC----ceEEecchHHHHH-HHHHhcCCCCEEEEcC-CCCCChHHHHHhhcCCCCeEEEeecC--
Q 024619           55 PTRDALESLLAKLDKAD----RALCFTSGMAALA-AVTHLLGTGEEIVAGD-DLYGGTDRLLSRVTPKTGVVVKRVNT--  126 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~----~~i~~~~g~~al~-~~~~~~~~g~~viv~~-~~~~~~~~~~~~~~~~~g~~~~~~~~--  126 (265)
                      +..+++++.+++++|.+    .++++++|++|+. ++..++++||+|++.+ +.|+...   ...++..|.+++.++.  
T Consensus        37 ~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vi~~~~~~~~~~~---~~~~~~~g~~~~~v~~~~  113 (366)
T 1m32_A           37 GVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARM---VEMAGLMGIAHHAYDCGE  113 (366)
T ss_dssp             TTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCCTTCCEEEEESSHHHHHH---HHHHHHHTCCEEEEECCT
T ss_pred             HHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHhcCCCCeEEEEeCCCccHHH---HHHHHHhCCceEEEeCCC
Confidence            45788999999999843    3666667779986 6777788999988765 5554322   2344556778887775  


Q ss_pred             ---CCHHHHHhhcCC--CceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCC-CCCCccEEEecccc
Q 024619          127 ---CDLDEVASAIGP--WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRP-LELGADIVMHSATK  200 (265)
Q Consensus       127 ---~d~~~l~~~~~~--~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~-~~~~~di~~~s~sK  200 (265)
                         .|++++++++.+  ++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.+..... ...+.|++++|+||
T Consensus       114 ~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~~K  193 (366)
T 1m32_A          114 VARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANK  193 (366)
T ss_dssp             TSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSS
T ss_pred             CCCCCHHHHHHHHhcCCCeEEEEEecccCCcceecCHHHHHHHHHHcCCEEEEECCccccCcCccccccCccEEEecCcc
Confidence               478999988864  588999999999999999999999999999999999999997765422 23468999999999


Q ss_pred             ccccCCCceeeEEEeechhH
Q 024619          201 FIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       201 ~~~g~~g~~~G~v~~~~~~~  220 (265)
                      +++++.|+  |+++++++.+
T Consensus       194 ~~~~~~g~--G~~~~~~~~~  211 (366)
T 1m32_A          194 CIQGVPGF--AFVIAREQKL  211 (366)
T ss_dssp             TTCCCSSE--EEEEEEHHHH
T ss_pred             cccCCCce--EEEEECHHHH
Confidence            98777764  9998887544

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=99.85  E-value=8.1e-21  Score=172.09  Aligned_cols=160  Identities=21%  Similarity=0.183  Sum_probs=131.5

Q ss_pred             hHHHHHHHHHhHhCCC----ce--EEecchHHHHH-HHHHhcCCC--------CEEEEcCCCCCChHHHHHhhcCCCCeE
Q 024619           56 TRDALESLLAKLDKAD----RA--LCFTSGMAALA-AVTHLLGTG--------EEIVAGDDLYGGTDRLLSRVTPKTGVV  120 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~----~~--i~~~~g~~al~-~~~~~~~~g--------~~viv~~~~~~~~~~~~~~~~~~~g~~  120 (265)
                      ..+++++++++++|.+    .+  +++++|++|+. ++..+.++|        |+|+++.++|+++.    ..++..|++
T Consensus       140 le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~----~~~~~~G~~  215 (514)
T 3mad_A          140 FEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFD----KAAQYFGIK  215 (514)
T ss_dssp             HHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHH----HHHHHHTCE
T ss_pred             HHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHH----HHHHHcCCe
Confidence            3667788889999876    34  77777789986 666666665        89999999999987    444567899


Q ss_pred             EEeecCC-----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCC------------
Q 024619          121 VKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL------------  183 (265)
Q Consensus       121 ~~~~~~~-----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~------------  183 (265)
                      ++.++.+     |++++++++.+++++|++++++||+|.+.|+++|.++|++||+++|+|++|+.+..            
T Consensus       216 v~~v~~~~~~~~d~~~Le~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~  295 (514)
T 3mad_A          216 LVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPP  295 (514)
T ss_dssp             EEEECBCTTSCBCHHHHHHHCCTTEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCC
T ss_pred             eEEeeeCCCCCCCHHHHHHHhccCCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCc
Confidence            9999876     89999999999999999999999999999999999999999999999999986533            


Q ss_pred             cCCCCCCccEEEeccccccccCCCceeeEEEeechhHH
Q 024619          184 SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA  221 (265)
Q Consensus       184 ~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~  221 (265)
                      ......+.|+++.|++|++.++.+  +|+++.+++.+.
T Consensus       296 ~~~~~~g~d~~~~s~~K~l~~~~~--~g~~~~~~~~~~  331 (514)
T 3mad_A          296 FDFRLEGVTSVSADTHKYGYGAKG--TSVILYRRPDLL  331 (514)
T ss_dssp             CSTTSTTCCEEEECTTTTTCCCSS--CEEEEESSHHHH
T ss_pred             ccccCCCCcEEEECchhccCCCCC--eEEEEEeCHHHh
Confidence            112344789999999999766655  588888876553

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=99.85  E-value=1.3e-20  Score=162.49  Aligned_cols=158  Identities=11%  Similarity=0.114  Sum_probs=122.8

Q ss_pred             hhHHHHHHHHHhHhCCC--c-eEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC---
Q 024619           55 PTRDALESLLAKLDKAD--R-ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~--~-~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---  127 (265)
                      ...+++++++++++|.+  + ++++++|++++. ++.++.++ +.+++..+.|. .  .+...++..|++++.++.+   
T Consensus        43 ~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~~~-~~i~~~~~~~~-~--~~~~~~~~~g~~~~~v~~~~~~  118 (362)
T 3ffr_A           43 EVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCVEK-KSFHCVNGSFS-K--RFYEFAGELGREAYKEEAAFGK  118 (362)
T ss_dssp             HHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHCSS-EEEEEECSHHH-H--HHHHHHHHTTCEEEEEECCTTC
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhccCC-cEEEEcCcHHH-H--HHHHHHHHhCCCeEEEecCCCC
Confidence            35888999999999873  3 556666679986 66778877 54555555554 1  2224556678899888754   


Q ss_pred             --CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHc-CCEEEEeCCcCCCCCcCCCCCCccEEEecccccccc
Q 024619          128 --DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH-GALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAG  204 (265)
Q Consensus       128 --d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~-~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g  204 (265)
                        |+++++  +.+++++|++++|+||||.+.|+++|.++|++| |+++|+|++|+.+........ .|++++|+||++++
T Consensus       119 ~~d~~~l~--~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~~~~~~~~-~d~~~~s~~K~~~~  195 (362)
T 3ffr_A          119 GFYPADIT--VPADAEIICLTHNETSSGVSMPVEDINTFRDKNKDALIFVDAVSSLPYPKFDWTK-IDSVFFSVQKCFGL  195 (362)
T ss_dssp             CCCGGGCC--CCTTCCEEEEESEETTTTEECCHHHHTTSGGGSTTSEEEEECTTTTTSSCCCTTS-CSEEEEETTSTTCC
T ss_pred             CCCHHHHh--ccCCccEEEEEcCCCCcceeCCHHHHHHHHHhCCCCEEEEecccccCCcccChhH-CcEEEEecccccCC
Confidence              788887  678899999999999999999999999999999 999999999998775433333 89999999999976


Q ss_pred             CCCceeeEEEeechhHH
Q 024619          205 HSDVMAGVLAVKGERLA  221 (265)
Q Consensus       205 ~~g~~~G~v~~~~~~~~  221 (265)
                      ++|+  |+++.+++.+.
T Consensus       196 ~~G~--g~~~~~~~~~~  210 (362)
T 3ffr_A          196 PAGL--GVWILNDRVIE  210 (362)
T ss_dssp             CSCC--EEEEEEHHHHH
T ss_pred             CCce--EEEEECHHHHH
Confidence            8884  77877775543

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=99.85  E-value=6.3e-21  Score=170.63  Aligned_cols=164  Identities=10%  Similarity=0.140  Sum_probs=129.8

Q ss_pred             hhHHHHHHHHHhHhCCC-ceEEecch-HHHHH-HHHHhcCCCC---EEEEcCCCCCChHHHHHhhcCCCCeEE-----Ee
Q 024619           55 PTRDALESLLAKLDKAD-RALCFTSG-MAALA-AVTHLLGTGE---EIVAGDDLYGGTDRLLSRVTPKTGVVV-----KR  123 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~-~~i~~~~g-~~al~-~~~~~~~~g~---~viv~~~~~~~~~~~~~~~~~~~g~~~-----~~  123 (265)
                      ...+++++++++++|.+ +.+++++| ++++. ++.+++++|+   +|+++.|+|++....+...++..|.++     ..
T Consensus       111 ~~~~~l~~~la~~~g~~~~~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~  190 (465)
T 3e9k_A          111 TGDESIVGLMKDIVGANEKEIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMI  190 (465)
T ss_dssp             GTTHHHHGGGHHHHTCCGGGEEECSCHHHHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEE
T ss_pred             HhHHHHHHHHHHHcCCCcCCEEEECCHHHHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEE
Confidence            34788999999999987 45555555 58887 6677777655   499999999998776666667777764     22


Q ss_pred             ecC-----CCHHHHHhhcC---CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCC-CCCCccEE
Q 024619          124 VNT-----CDLDEVASAIG---PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRP-LELGADIV  194 (265)
Q Consensus       124 ~~~-----~d~~~l~~~~~---~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~-~~~~~di~  194 (265)
                      .+.     .|++++++++.   +++++|++++++||||.+.|+++|.++|+++|+++++|++|+.|..... ...+.|++
T Consensus       191 ~~~~~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~~~~~~~~D~~  270 (465)
T 3e9k_A          191 KPREGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVELYLHDWGVDFA  270 (465)
T ss_dssp             CCCTTCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCCEE
T ss_pred             ecCCCCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcCCchhhcCCCEE
Confidence            232     27999999985   6799999999999999999999999999999999999999998877533 24578999


Q ss_pred             Eeccccccc-cCCCceeeEEEeechhH
Q 024619          195 MHSATKFIA-GHSDVMAGVLAVKGERL  220 (265)
Q Consensus       195 ~~s~sK~~~-g~~g~~~G~v~~~~~~~  220 (265)
                      ++|++|+++ ||.|  .|+++.+++..
T Consensus       271 ~~s~~K~l~~gp~~--~g~l~~~~~~~  295 (465)
T 3e9k_A          271 CWCSYKYLNAGAGG--IAGAFIHEKHA  295 (465)
T ss_dssp             EECSSSTTCCCTTC--CCEEEECGGGT
T ss_pred             EECcccccccCCCc--eEEEEEcHHHH
Confidence            999999995 5554  47777776543

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=99.84  E-value=2.7e-20  Score=160.25  Aligned_cols=193  Identities=16%  Similarity=0.129  Sum_probs=140.2

Q ss_pred             eEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CC-hhHHHHHHHHHhHhCCC--ceEEecchHHHHH-HH
Q 024619           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GN-PTRDALESLLAKLDKAD--RALCFTSGMAALA-AV   86 (265)
Q Consensus        12 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~-~~~~~l~~~l~~~~g~~--~~i~~~~g~~al~-~~   86 (265)
                      .++.|+ + ++.+..++.+..+.. ....       .|... |. +.++++++++++++|.+  .++++++|++++. ++
T Consensus        14 ~~i~l~-~-~~~~~~~~~v~~a~~-~~~~-------~~~~~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~   83 (359)
T 1svv_A           14 KPYSFV-N-DYSVGMHPKILDLMA-RDNM-------TQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIAC   83 (359)
T ss_dssp             -CEECS-C-SCSSCCCHHHHHHHH-HHTT-------CCCCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHH
T ss_pred             eeEEec-C-CCcCCCCHHHHHHHH-HHHh-------hccccccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHH
Confidence            478998 4 666644443433332 1111       24333 44 56999999999999876  3556666779986 67


Q ss_pred             HHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC----CHHHHHhhcCCC-------ceEEEEecCCCCcccc
Q 024619           87 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLDEVASAIGPW-------TKLVWVESPTNPRQQI  155 (265)
Q Consensus        87 ~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~~~~~-------~~~i~~~~~~np~G~~  155 (265)
                      ..+.++||+|++++|+|+++...  ..++..|.+++.++.+    |++++++.+.++       +++|++++| ||||.+
T Consensus        84 ~~~~~~gd~vl~~~~~~~~~~~~--~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~  160 (359)
T 1svv_A           84 SLALRPWEAVIATQLGHISTHET--GAIEATGHKVVTAPCPDGKLRVADIESALHENRSEHMVIPKLVYISNT-TEVGTQ  160 (359)
T ss_dssp             HHHCCTTEEEEEETTSHHHHSST--THHHHTTCCEEEECCTTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCC
T ss_pred             HHHhCCCCEEEEcccchHHHHHH--HHHhcCCCeeEEEeCCCCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCCcee
Confidence            77889999999999999887531  0245578888888865    589999888654       899999999 799999


Q ss_pred             cc---HHHHHHHHHHcCCEEEEeCCc---CCCCCcCCCC-----CCccEEEeccccccccCCCceeeEEEeechhH
Q 024619          156 CD---IRKIAEMAHAHGALLLVDNSI---MSPVLSRPLE-----LGADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       156 ~~---l~~i~~~a~~~~~~li~D~~~---~~~~~~~~~~-----~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                      .+   +++|.++|+++|+++|+||+|   +.+..+....     ...|+++.|++|+. ++.|  .|+++.+++.+
T Consensus       161 ~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~g-~~~~--~g~l~~~~~~~  233 (359)
T 1svv_A          161 YTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAG-GMFG--EALIILNDALK  233 (359)
T ss_dssp             CCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTT-CSSC--EEEEECSGGGC
T ss_pred             cCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccCC-CCCc--eEEEEEcccHH
Confidence            87   899999999999999999998   4343332111     35789999999974 6654  48888776544

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=99.84  E-value=2.3e-20  Score=170.09  Aligned_cols=169  Identities=17%  Similarity=0.220  Sum_probs=128.1

Q ss_pred             CccCCC-CCh-hHHHHHHHH-HhHhCC------CceEEecchH-HHHH-HHHH-----hcCCCCEEEEcCCCCCChHHHH
Q 024619           47 YDYTRS-GNP-TRDALESLL-AKLDKA------DRALCFTSGM-AALA-AVTH-----LLGTGEEIVAGDDLYGGTDRLL  110 (265)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~~l-~~~~g~------~~~i~~~~g~-~al~-~~~~-----~~~~g~~viv~~~~~~~~~~~~  110 (265)
                      ..|++. |.+ +++++.+.+ .+.++.      ++.+++++|+ +++. ++..     ++++||.|++++|+|+.+....
T Consensus       132 ~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~  211 (546)
T 2zy4_A          132 CNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIP  211 (546)
T ss_dssp             CSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHH
T ss_pred             CCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHH
Confidence            468777 664 687766655 444321      2466666665 8886 4444     4789999999999999987432


Q ss_pred             HhhcCCCCeEEEeecC-------CCHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHH--HHcCCEEEEeCCc
Q 024619          111 SRVTPKTGVVVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMA--HAHGALLLVDNSI  178 (265)
Q Consensus       111 ~~~~~~~g~~~~~~~~-------~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a--~~~~~~li~D~~~  178 (265)
                        .....|.+++.++.       .|++++++.+.+++++|++++|+||||.+.+   +++|+++|  +++|++||+||+|
T Consensus       212 --~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y  289 (546)
T 2zy4_A          212 --ELAQYALEEVAINADPSLNWQYPDSELDKLKDPAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVY  289 (546)
T ss_dssp             --HSTTSCCEEEEEECBGGGTTBCCHHHHGGGGSTTEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTT
T ss_pred             --HHcCCCcEEEEEecCcccCCCCCHHHHHHhhCCCCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcc
Confidence              23455788888875       4789999888888999999999999999976   67789998  7889999999999


Q ss_pred             CCCCCc--CCC--CCCccEEEeccccccccCCCceeeEEEeech
Q 024619          179 MSPVLS--RPL--ELGADIVMHSATKFIAGHSDVMAGVLAVKGE  218 (265)
Q Consensus       179 ~~~~~~--~~~--~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~  218 (265)
                      +.....  ...  ..+.++++.|+||++ |.+|+|+|+++++++
T Consensus       290 ~~~~~~~~s~~~~~~~~~i~~~S~SK~~-g~~GlRiG~~~~~~~  332 (546)
T 2zy4_A          290 GTFADDFQSLFAICPENTLLVYSFSKYF-GATGWRLGVVAAHQQ  332 (546)
T ss_dssp             GGGSTTCCCHHHHCGGGEEEEEESTTTT-TCGGGCEEEEEEESS
T ss_pred             hhhcccCcCHHHhCCCCEEEEEeCcccc-CCCCcceEEEEECCH
Confidence            854432  111  125789999999999 677899999998875

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=99.84  E-value=6.3e-20  Score=157.91  Aligned_cols=167  Identities=14%  Similarity=0.124  Sum_probs=123.4

Q ss_pred             ChhHHHHHHHHHhHhCCCc-eEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCC--CeEEEeecCC--
Q 024619           54 NPTRDALESLLAKLDKADR-ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT--GVVVKRVNTC--  127 (265)
Q Consensus        54 ~~~~~~l~~~l~~~~g~~~-~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~--  127 (265)
                      .+..+++++++++++|.+. ++++++|++++. ++..+.++||+|+++.|.|.+....  ..+...  |.+++.++.+  
T Consensus        42 ~~~~~~l~~~la~~~g~~~~v~~~~~gt~a~~~al~~~~~~gd~vi~~~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~  119 (356)
T 1v72_A           42 DELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAMTPPWGNIYCHPASHINNDEC--GAPEFFSNGAKLMTVDGPAA  119 (356)
T ss_dssp             SHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTSCCTTEEEEECTTSHHHHSST--THHHHHTTSCEEEECCCGGG
T ss_pred             chHHHHHHHHHHHHhCCCCcEEEeCCccHHHHHHHHHhcCCCCEEEEcCccchhhhhc--hHHHHHhCCcEEEEecCCCC
Confidence            3678999999999999655 577778888886 6677788999999999988665311  002333  8899988865  


Q ss_pred             --CHHHHHh-hcCC-------CceEEEEecCCCCcccc---ccHHHHHHHHHHcCCEEEEeCCcCCCC------CcCCC-
Q 024619          128 --DLDEVAS-AIGP-------WTKLVWVESPTNPRQQI---CDIRKIAEMAHAHGALLLVDNSIMSPV------LSRPL-  187 (265)
Q Consensus       128 --d~~~l~~-~~~~-------~~~~i~~~~~~np~G~~---~~l~~i~~~a~~~~~~li~D~~~~~~~------~~~~~-  187 (265)
                        |++++++ ++.+       ++++|++++|+| ||.+   .++++|.++|++||+++|+|++|+.+.      ..... 
T Consensus       120 ~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~  198 (356)
T 1v72_A          120 KLDIVRLRERTREKVGDVHTTQPACVSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMT  198 (356)
T ss_dssp             CCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTT
T ss_pred             eEcHHHHHHHhhhcchhhccCCceEEEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhh
Confidence              8999999 8875       689999999987 9995   568999999999999999999986421      11111 


Q ss_pred             -CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHH
Q 024619          188 -ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL  227 (265)
Q Consensus       188 -~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~  227 (265)
                       ..+.|+++.|+||+ ++|.|  +|+++.+++.+ +.....
T Consensus       199 ~~~~~d~~~~s~sK~-g~~~G--~g~~~~~~~~~-~~~~~~  235 (356)
T 1v72_A          199 WKAGVDALSFGATKN-GVLAA--EAIVLFNTSLA-TEMSYR  235 (356)
T ss_dssp             GGGTCCEEEECCGGG-TCSSC--EEEEESSGGGH-HHHHHH
T ss_pred             hhhcCCEEEEecccC-CCcCc--cEEEEECHHHH-hhHHHH
Confidence             13678899999999 45543  26887765444 433333

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=99.84  E-value=1.4e-20  Score=166.96  Aligned_cols=226  Identities=13%  Similarity=0.146  Sum_probs=141.9

Q ss_pred             ceeEeeccCCCCC--CCCCCCCeeeccccccCCCCCCCCCccCCC-CChhHHHHHHHHHhHhCCCceEEecchHHHHH-H
Q 024619           10 STLLMNFSNEFDP--YGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLDKADRALCFTSGMAALA-A   85 (265)
Q Consensus        10 ~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~   85 (265)
                      +.++++|.+++++  +|..+|.+..+..-.... .  .  .+++. ..+...++++.+++++|.+.++++++|++|+. +
T Consensus        64 G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~-~--~--~~~~~~~~~~~~~l~~~la~~~g~~~v~~~~sGseA~~~a  138 (433)
T 1z7d_A           64 DKRYYDFLSAYSSVNQGHCHPNILNAMINQAKN-L--T--ICSRAFFSVPLGICERYLTNLLGYDKVLMMNTGAEANETA  138 (433)
T ss_dssp             CCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTT-C--S--CCCTTSEEHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHH
T ss_pred             CCEEEEcccchhhcccCCCCHHHHHHHHHHHHh-C--C--CccCCcCCHHHHHHHHHHHhhcCCCeEEEeCCHHHHHHHH
Confidence            4578899743443  454455555443322221 1  1  12222 23568999999999999888889999999986 4


Q ss_pred             HHHhc---------CCC-CEEEEcCCCCCChHHHHHhhcCCCC------------eEEEeecCCCHHHHHhhc-CCCceE
Q 024619           86 VTHLL---------GTG-EEIVAGDDLYGGTDRLLSRVTPKTG------------VVVKRVNTCDLDEVASAI-GPWTKL  142 (265)
Q Consensus        86 ~~~~~---------~~g-~~viv~~~~~~~~~~~~~~~~~~~g------------~~~~~~~~~d~~~l~~~~-~~~~~~  142 (265)
                      +..+.         .+| ++|++.+|+|+++....   ....|            ..+..++..|++++++++ .+++++
T Consensus       139 l~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~---~~~~g~~~~~~~~~p~~~~v~~~~~~d~~~le~~l~~~~~~~  215 (433)
T 1z7d_A          139 YKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGC---ISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELKDPNVCA  215 (433)
T ss_dssp             HHHHHHHHHHTSCCCTTCCEEEEETTC-----------------------------CEEEECTTCHHHHHHHHTSTTEEE
T ss_pred             HHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhh---hcccCCccccccCCCCCCCeEEeCCCCHHHHHHHhCCCCEEE
Confidence            44332         467 99999999998765321   11112            345667778999999999 577899


Q ss_pred             EEEecCCCCccccc----cHHHHHHHHHHcCCEEEEeCCcCC-CCCcC-----CCCCCccEEEeccccccccCCC-ceee
Q 024619          143 VWVESPTNPRQQIC----DIRKIAEMAHAHGALLLVDNSIMS-PVLSR-----PLELGADIVMHSATKFIAGHSD-VMAG  211 (265)
Q Consensus       143 i~~~~~~np~G~~~----~l~~i~~~a~~~~~~li~D~~~~~-~~~~~-----~~~~~~di~~~s~sK~~~g~~g-~~~G  211 (265)
                      |++++.+|++|.+.    ++++|.++|++||+++|+||+|.. +..+.     ......|++  |++|+++  +| +++|
T Consensus       216 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l~--~G~~~~G  291 (433)
T 1z7d_A          216 FIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVI--LLGKALS--GGHYPIS  291 (433)
T ss_dssp             EEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGG--TTSSCCE
T ss_pred             EEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcchhhHhcCCCCCEE--EECcccc--CCCCCeE
Confidence            99888888899875    799999999999999999999962 22121     112346776  7899995  46 7899


Q ss_pred             EEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619          212 VLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       212 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      +++++++.+ +.+...........++..++.....++
T Consensus       292 ~v~~~~~~~-~~l~~~~~~~t~~~~~~~~aaa~aal~  327 (433)
T 1z7d_A          292 AVLANDDIM-LVIKPGEHGSTYGGNPLAASICVEALN  327 (433)
T ss_dssp             EEEECHHHH-TTCCTTCCCCTTTTCHHHHHHHHHHHH
T ss_pred             EEEECHHHH-hhhccccccccCCCCHHHHHHHHHHHH
Confidence            999877533 322211112223445555554444443

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.83  E-value=3.2e-20  Score=160.21  Aligned_cols=168  Identities=20%  Similarity=0.170  Sum_probs=121.7

Q ss_pred             hhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHhcCCCCE--EEEcCCCCCChHHHHHhhcCCCCeEEEeecCC----
Q 024619           55 PTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEE--IVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~~~~g~~--viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----  127 (265)
                      +..+++++++++++|.+..+++++|++|+. ++..++++||.  |+++.+.|.... .........|.+++.++.+    
T Consensus        48 ~~~~~l~~~la~~~~~~~~i~~~~g~~a~~~a~~~~~~~g~~~vvi~~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~  126 (359)
T 3pj0_A           48 AVIEDFETKIAKILGKQSAVFFPSGTMAQQIALRIWADRKENRRVAYHPLSHLEIH-EQDGLKELQQITPLLLGTANQLL  126 (359)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHS-STTHHHHHHCCEEEECSCTTSCC
T ss_pred             HHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHHhcCCCcEEEEeccceeeeh-hcchHHHhcCceEEecCCcCCCc
Confidence            678999999999999998888899998885 67777888886  555545443221 0001113358899888864    


Q ss_pred             CHHHHHhhcCCCceEEEEecCCCCc-cccccH---HHHHHHHHHcCCEEEEeCCcCCCCC---c---CCCCCCccEEEec
Q 024619          128 DLDEVASAIGPWTKLVWVESPTNPR-QQICDI---RKIAEMAHAHGALLLVDNSIMSPVL---S---RPLELGADIVMHS  197 (265)
Q Consensus       128 d~~~l~~~~~~~~~~i~~~~~~np~-G~~~~l---~~i~~~a~~~~~~li~D~~~~~~~~---~---~~~~~~~di~~~s  197 (265)
                      |+++++++ .+++++|++++|+||+ |.+.+.   ++|+++|++||+++|+|++|..+..   .   .....+.|+++.|
T Consensus       127 d~~~l~~~-~~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s  205 (359)
T 3pj0_A          127 TIDDIKSL-REPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALFDSVYVS  205 (359)
T ss_dssp             CHHHHHTC-SSCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHHTTCSEEEEE
T ss_pred             CHHHHHhc-cCCceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhhccCCEEEEe
Confidence            89999988 7789999999999998 688764   5569999999999999999865432   1   1112457899999


Q ss_pred             cccccccCCCceeeEEEeechhHHHHHHHHH
Q 024619          198 ATKFIAGHSDVMAGVLAVKGERLAKELYFLQ  228 (265)
Q Consensus       198 ~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~  228 (265)
                      +||+++++.   +|+++.+++ +.+......
T Consensus       206 ~sK~~~~~~---gg~~~~~~~-l~~~~~~~~  232 (359)
T 3pj0_A          206 FYKGIGGIA---GAILAGNDD-FVQEAKIWK  232 (359)
T ss_dssp             SSSTTCCSS---CEEEEECHH-HHHHHHHHH
T ss_pred             ccccCCCcc---eEEEECCHH-HHHHHHHHH
Confidence            999997663   377766654 444444433

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=99.83  E-value=3.2e-20  Score=165.05  Aligned_cols=229  Identities=14%  Similarity=0.137  Sum_probs=148.2

Q ss_pred             ceeEeeccCCCCC--CCCCCCCeeeccccccCCCCCCCCCccCCC-CChhHHHHHHHHHhHhCCCceEEecchHHHHH-H
Q 024619           10 STLLMNFSNEFDP--YGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLDKADRALCFTSGMAALA-A   85 (265)
Q Consensus        10 ~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~   85 (265)
                      +..+++|.+++++  +|..+|.+..+..-....    .. .+++. ..+...++++++++++|.+.++++++|++|+. +
T Consensus        75 g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~----~~-~~~~~~~~~~~~~l~~~la~~~g~~~v~~~~sGseA~~~a  149 (439)
T 2oat_A           75 GRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDK----LT-LTSRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETA  149 (439)
T ss_dssp             CCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTT----CS-CCCTTSEESSHHHHHHHHHHHHTCSEEEEESSHHHHHHHH
T ss_pred             CCEEEEccCCcccccCCCCCHHHHHHHHHHHHh----cC-cccCccCCHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHH
Confidence            4578999854555  444455455443322221    11 12222 23568999999999999888888899999986 4


Q ss_pred             HHHhc---------CCC-CEEEEcCCCCCChHHHHHhhcCC------C---CeEEEeecCCCHHHHHhhcC-CCceEEEE
Q 024619           86 VTHLL---------GTG-EEIVAGDDLYGGTDRLLSRVTPK------T---GVVVKRVNTCDLDEVASAIG-PWTKLVWV  145 (265)
Q Consensus        86 ~~~~~---------~~g-~~viv~~~~~~~~~~~~~~~~~~------~---g~~~~~~~~~d~~~l~~~~~-~~~~~i~~  145 (265)
                      +..+.         .+| ++|++.+|.|++...........      .   ..++..++..|++++++++. +++++|++
T Consensus       150 l~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~d~~~le~~l~~~~~~~vi~  229 (439)
T 2oat_A          150 CKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQDPNVAAFMV  229 (439)
T ss_dssp             HHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECSSCHHHHHHHTTSTTEEEEEE
T ss_pred             HHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCCCCHHHHHHHhCCCCEEEEEE
Confidence            44433         356 89999999998764322121110      0   03566777789999999994 67888988


Q ss_pred             ecCCCCccccc----cHHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CCCCCccEEEeccccccccCCC-ceeeEEE
Q 024619          146 ESPTNPRQQIC----DIRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATKFIAGHSD-VMAGVLA  214 (265)
Q Consensus       146 ~~~~np~G~~~----~l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~~~~~di~~~s~sK~~~g~~g-~~~G~v~  214 (265)
                      ++.++++|.+.    ++++|.++|++||+++|+||+|. .+..+.     ......|++  |++|++++  | +++|+++
T Consensus       230 ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~~~~~~~Di~--t~sK~l~~--G~~~~G~v~  305 (439)
T 2oat_A          230 EPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIV--LLGKALSG--GLYPVSAVL  305 (439)
T ss_dssp             CSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT--TSSCCEEEE
T ss_pred             ECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHHHhCCCCcEE--EecccccC--CCCCeEEEE
Confidence            88888899875    79999999999999999999995 221121     112346766  88999953  6 7889999


Q ss_pred             eechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619          215 VKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      ++++.+ +.+...........++..++.....++
T Consensus       306 ~~~~~~-~~l~~~~~~~t~~~~~~~~aaa~aal~  338 (439)
T 2oat_A          306 CDDDIM-LTIKPGEHGSTYGGNPLGCRVAIAALE  338 (439)
T ss_dssp             ECHHHH-TTSCTTSSCCSSTTCHHHHHHHHHHHH
T ss_pred             ECHHHH-hccCCCCcccCCCcCHHHHHHHHHHHH
Confidence            887533 322211122233445555554444443

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=99.83  E-value=2.4e-20  Score=163.57  Aligned_cols=160  Identities=23%  Similarity=0.244  Sum_probs=119.2

Q ss_pred             HHHHHhHhCCCce-EEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCe--EEEeecC------CCHH
Q 024619           61 ESLLAKLDKADRA-LCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV--VVKRVNT------CDLD  130 (265)
Q Consensus        61 ~~~l~~~~g~~~~-i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~--~~~~~~~------~d~~  130 (265)
                      ++++++++|.+.. +++++|++|+. ++..++++||+|++++|+|+++.... ..++..|.  .++.++.      .|++
T Consensus        75 r~~la~~~g~~~~~i~~~sGt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~d~~  153 (407)
T 2dkj_A           75 IERAKALFGAAWANVQPHSGSQANMAVYMALMEPGDTLMGMDLAAGGHLTHG-SRVNFSGKLYKVVSYGVRPDTELIDLE  153 (407)
T ss_dssp             HHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGT-CTTSHHHHHSEEEEECCCTTTSSCCHH
T ss_pred             HHHHHHHhCCCcceEEecchHHHHHHHHHHhcCCCCEEEEecccccCccchH-HHHHhcCceEEEEecCCCcccCccCHH
Confidence            3589999998854 67789998886 66777899999999999998883111 22333444  4555532      3789


Q ss_pred             HHHhhcCC-CceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-----CCCCCCccEEEecccccccc
Q 024619          131 EVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLELGADIVMHSATKFIAG  204 (265)
Q Consensus       131 ~l~~~~~~-~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~~~~~~di~~~s~sK~~~g  204 (265)
                      ++++++.+ ++++|++++|+||  .+.|+++|.++|+++|+++|+||+|+.|...     .... ..|++++|+||+++|
T Consensus       154 ~l~~~l~~~~~~~v~~~~p~~~--~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~-~~di~~~s~sK~l~g  230 (407)
T 2dkj_A          154 EVRRLALEHRPKVIVAGASAYP--RFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLP-YAHVVTSTTHKTLRG  230 (407)
T ss_dssp             HHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTT-TCSEEEEESSGGGCC
T ss_pred             HHHHHHhhcCCeEEEEeccccC--CCCCHHHHHHHHHHcCCEEEEEccccccccccCccCCccc-cccEEEEeccccCCC
Confidence            99998874 8999999889997  6789999999999999999999999874432     1122 379999999998865


Q ss_pred             CCCceeeEEEeechhHHHHHHHH
Q 024619          205 HSDVMAGVLAVKGERLAKELYFL  227 (265)
Q Consensus       205 ~~g~~~G~v~~~~~~~~~~~~~~  227 (265)
                      +   ++|+++++++.+.+.+...
T Consensus       231 ~---~~G~~~~~~~~~~~~l~~~  250 (407)
T 2dkj_A          231 P---RGGLILSNDPELGKRIDKL  250 (407)
T ss_dssp             C---SCEEEEESCHHHHHHHHHH
T ss_pred             C---CceEEEECCHHHHHHHHhh
Confidence            4   4699988844444444333

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=99.83  E-value=1.1e-19  Score=162.00  Aligned_cols=164  Identities=17%  Similarity=0.161  Sum_probs=125.9

Q ss_pred             ChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHhcCCCCEEEEcCCCC-CChHHHHHhhcCCCCeEEEeecCC----
Q 024619           54 NPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLY-GGTDRLLSRVTPKTGVVVKRVNTC----  127 (265)
Q Consensus        54 ~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~----  127 (265)
                      .+...++++.+++++|.++++++++|++|+. ++..++++||  +++.|+| +.+.    ..++..|.+++.++.+    
T Consensus        74 ~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~al~~l~~~gd--i~~~~~~~~~~~----~~~~~~G~~~~~v~~~~~~~  147 (456)
T 2ez2_A           74 SENFYHLERTVQELFGFKHIVPTHQGRGAENLLSQLAIKPGQ--YVAGNMYFTTTR----YHQEKNGAVFVDIVRDEAHD  147 (456)
T ss_dssp             CHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHHHHHHCCTTC--EEEESSCCHHHH----HHHHHTTCEEEECBCGGGGC
T ss_pred             ChhHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHhCCCCC--EeccccccchhH----HHHHHcCCEEEEeccccccc
Confidence            3668889999999999998999999999986 6777789999  7778898 5544    3345678888887643    


Q ss_pred             -----------CHHHHHhhcCCCc----eEEEEecCCC-Ccccccc---HHHHHHHHHHcCCEEEEeCCcCCC-------
Q 024619          128 -----------DLDEVASAIGPWT----KLVWVESPTN-PRQQICD---IRKIAEMAHAHGALLLVDNSIMSP-------  181 (265)
Q Consensus       128 -----------d~~~l~~~~~~~~----~~i~~~~~~n-p~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~-------  181 (265)
                                 |++++++++.+++    ++|++++|+| |||.+.+   +++|+++|++||+++|+||+|+.|       
T Consensus       148 ~~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~  227 (456)
T 2ez2_A          148 AGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKE  227 (456)
T ss_dssp             TTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHH
T ss_pred             ccccccccCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccc
Confidence                       7899998886554    8999999999 9999876   999999999999999999999864       


Q ss_pred             --C-C-cCC-------CCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHH
Q 024619          182 --V-L-SRP-------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF  226 (265)
Q Consensus       182 --~-~-~~~-------~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~  226 (265)
                        . + +..       .....|+++.|++|++ ++ | ++|+++.+++.+.+.+..
T Consensus       228 ~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~-~~-~-~gG~~~~~~~~~~~~~~~  280 (456)
T 2ez2_A          228 QEQGFENKSIAEIVHEMFSYADGCTMSGKKDC-LV-N-IGGFLCMNDDEMFSSAKE  280 (456)
T ss_dssp             HSTTCTTSCHHHHHHHHHTTCSEEEEETTTTT-CC-S-SCEEEEESCHHHHHHHHH
T ss_pred             cccccCCcchhhhhhhhcccCCEEEEeCcccC-CC-C-ceeEEEECCHHHHHHHHH
Confidence              1 2 221       1123688888889986 43 3 479998855455444433

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.83  E-value=9.2e-20  Score=160.34  Aligned_cols=166  Identities=20%  Similarity=0.211  Sum_probs=117.4

Q ss_pred             HHHHHHHHHhHhCCCc-eEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhh-cCCCCeEEEeecC-----CC
Q 024619           57 RDALESLLAKLDKADR-ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRV-TPKTGVVVKRVNT-----CD  128 (265)
Q Consensus        57 ~~~l~~~l~~~~g~~~-~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~-~~~~g~~~~~~~~-----~d  128 (265)
                      .+.+++.+++++|.+. .+++++|++|+. ++..++++||+|++++|+|+++...+... ....+..++.++.     .|
T Consensus        73 ~~~~~~~la~~~g~~~~~i~~~sGt~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d  152 (417)
T 3n0l_A           73 ETLAIERCKKLFNCKFANVQPNSGSQANQGVYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRID  152 (417)
T ss_dssp             HHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHSCTTCEEEEECC----------------CCSEEEEECCCTTSSCC
T ss_pred             HHHHHHHHHHHhCCCCcceEeccHHHHHHHHHHHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcC
Confidence            3345568899999885 488899998886 67788999999999999998765322111 1123455555554     48


Q ss_pred             HHHHHhhcC-CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCC-----cCCCCCCccEEEecccccc
Q 024619          129 LDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL-----SRPLELGADIVMHSATKFI  202 (265)
Q Consensus       129 ~~~l~~~~~-~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~-----~~~~~~~~di~~~s~sK~~  202 (265)
                      ++++++++. +++++|++++++|  |.+.++++|.++|++||+++|+|++|+.+..     ..... +.|++++|+||++
T Consensus       153 ~~~l~~~i~~~~~~~v~~~~~~~--G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~-~~di~~~s~sK~l  229 (417)
T 3n0l_A          153 YEKVREIAKKEKPKLIVCGASAY--ARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFP-YAHVVSSTTHKTL  229 (417)
T ss_dssp             HHHHHHHHHHHCCSEEEECCSSC--CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTT-TCSEEEEESSTTT
T ss_pred             HHHHHHHHHhcCCeEEEECCccc--CccCCHHHHHHHHHHcCCEEEEECccchhhhhcccCCCccc-cceEEEeeCcccc
Confidence            999999987 6899999888775  8899999999999999999999999865543     21222 4799999999999


Q ss_pred             ccCCCceeeEEEeechhHHHHHHHHH
Q 024619          203 AGHSDVMAGVLAVKGERLAKELYFLQ  228 (265)
Q Consensus       203 ~g~~g~~~G~v~~~~~~~~~~~~~~~  228 (265)
                      .|+   ++|+++++++.+.+.+....
T Consensus       230 ~g~---~~G~~~~~~~~~~~~~~~~~  252 (417)
T 3n0l_A          230 RGP---RGGIIMTNDEELAKKINSAI  252 (417)
T ss_dssp             CSC---SCEEEEESCHHHHHHHHHHH
T ss_pred             CCC---CeeEEEECCHHHHHHHhhhh
Confidence            554   46999888555555444433

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=99.83  E-value=2.5e-19  Score=167.43  Aligned_cols=159  Identities=16%  Similarity=0.125  Sum_probs=128.2

Q ss_pred             hhHHHHHHHHHhHhCCCceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC------
Q 024619           55 PTRDALESLLAKLDKADRALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT------  126 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~------  126 (265)
                      ...+++++.+++++|++..+++++|+ +++. ++.+++++||+|+++.++|.++...   +++..|+++++++.      
T Consensus       173 ~~i~e~e~~lA~~~gae~~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~~---~~~l~Ga~~v~v~~~~~~~~  249 (730)
T 1c4k_A          173 GPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNS---ALAMAGGRPVYLQTNRNPYG  249 (730)
T ss_dssp             THHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHH---HTTTTCCEEEEECEEECTTC
T ss_pred             HHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHHH---HHHHCCCEEEEEeCCccccC
Confidence            45899999999999999888888887 7775 7788899999999999999888632   26778999888763      


Q ss_pred             ----CCHHHH-----HhhcCCC------c----eEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCC-c--
Q 024619          127 ----CDLDEV-----ASAIGPW------T----KLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL-S--  184 (265)
Q Consensus       127 ----~d~~~l-----~~~~~~~------~----~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~-~--  184 (265)
                          .|++++     ++++.++      +    ++|++++| |++|.+.|+++|+++|+++|+++++|++|+.+.. .  
T Consensus       250 i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~g~~livDeAh~~~~~f~~~  328 (730)
T 1c4k_A          250 FIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPM  328 (730)
T ss_dssp             CEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSGG
T ss_pred             ccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHcCCeEEEEcccccccccCcc
Confidence                267777     8888755      4    89999998 6899999999999999999999999999975321 1  


Q ss_pred             ----CCCCC---Ccc----EEEeccccccccCCCceeeEEEeechh
Q 024619          185 ----RPLEL---GAD----IVMHSATKFIAGHSDVMAGVLAVKGER  219 (265)
Q Consensus       185 ----~~~~~---~~d----i~~~s~sK~~~g~~g~~~G~v~~~~~~  219 (265)
                          .+...   +.|    ++++|+||+++|+.+  +|+++.+++.
T Consensus       329 ~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~--gg~I~v~~~~  372 (730)
T 1c4k_A          329 MRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQ--TSQIHKKDSH  372 (730)
T ss_dssp             GGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTT--CEEEEEECGG
T ss_pred             cCCcCcccccccCCCCCCEEEEECCCCCCCCCCC--EEEEEecchh
Confidence                12322   566    999999999977654  5788776654

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=99.83  E-value=3.5e-19  Score=155.64  Aligned_cols=161  Identities=21%  Similarity=0.193  Sum_probs=127.2

Q ss_pred             ChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHh-------cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeec
Q 024619           54 NPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-------LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN  125 (265)
Q Consensus        54 ~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~-------~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~  125 (265)
                      .+..+++++.+++++|.++.+++++|++|+. ++..+       +++||+|+++.++|+++...+    +..|.+++.++
T Consensus        33 ~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi~~~~~~~~~~~~~----~~~g~~~~~~~  108 (390)
T 3b8x_A           33 GEYVKQYETQFAKTFGSKYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYPL----QQYGLRVKFVD  108 (390)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEESSSCHHHHHHH----HHTTCEEEEEC
T ss_pred             ChHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEEECCCCcHHHHHHH----HHcCCEEEEEe
Confidence            3678999999999999999999999998886 66677       788999999999999987544    45788998887


Q ss_pred             CC------CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCc--cEEEec
Q 024619          126 TC------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGA--DIVMHS  197 (265)
Q Consensus       126 ~~------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~--di~~~s  197 (265)
                      .+      |++++++++.+++++|++++   ++|...|+++|.++|+++|+++|+|++|+.|........+.  |+.++|
T Consensus       109 ~~~~~~~~d~~~l~~~i~~~~~~v~~~~---~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~g~~~~~~~~s  185 (390)
T 3b8x_A          109 IDINTLNIDIESLKEAVTDSTKAILTVN---LLGNPNNFDEINKIIGGRDIILLEDNCESMGATFNNKCAGTFGLMGTFS  185 (390)
T ss_dssp             BCTTTCSBCHHHHHHHCCTTEEEEEEEC---GGGCCCCHHHHHHHHTTSCCEEEEECTTCTTCEETTEETTSSSSEEEEE
T ss_pred             cCccccCcCHHHHHHHhCcCCeEEEEEC---CccChhhHHHHHHHHHHcCCEEEEECcCcccCEECCcccccccceEEEE
Confidence            64      89999999988899999874   57778999999999999999999999999876654333444  555544


Q ss_pred             c--ccccccCCCceeeEEEeechhHHHHH
Q 024619          198 A--TKFIAGHSDVMAGVLAVKGERLAKEL  224 (265)
Q Consensus       198 ~--sK~~~g~~g~~~G~v~~~~~~~~~~~  224 (265)
                      +  +|.+.++   ++|+++.++..+.+..
T Consensus       186 ~~~~k~~~~g---~gG~~~~~~~~l~~~~  211 (390)
T 3b8x_A          186 SFYSNHIATM---EGGCIVTDDEEIYHIL  211 (390)
T ss_dssp             CCTTSSSCSS---SCEEEEESCHHHHHHH
T ss_pred             ccCCCCCccC---CceEEEeCCHHHHHHH
Confidence            3  4555332   3689988775554433

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=99.82  E-value=3.3e-20  Score=164.71  Aligned_cols=201  Identities=15%  Similarity=0.083  Sum_probs=135.0

Q ss_pred             cceeEeeccCCCCC---CCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHh--CC-CceEEecchHHH
Q 024619            9 VSTLLMNFSNEFDP---YGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD--KA-DRALCFTSGMAA   82 (265)
Q Consensus         9 ~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~--g~-~~~i~~~~g~~a   82 (265)
                      .+.++++|+ ++.+   +|..+|.+..+.......   ...+.+.....+.++++++++++++  +. +.++++++|++|
T Consensus        41 ~g~~~lD~~-~~~~~~~lG~~~p~v~~a~~~~~~~---~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea  116 (439)
T 3dxv_A           41 NGRELIDLS-GAWGAASLGYGHPAIVAAVSAAAAN---PAGATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDA  116 (439)
T ss_dssp             TSCEEEESS-TTTTTCTTCBSCHHHHHHHHHHHHS---CSCSCSSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHHHH
T ss_pred             CCCEEEECC-CchhhccCCCCCHHHHHHHHHHHHh---ccCccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHH
Confidence            346789999 6766   887554444443222111   1122222222356999999999998  55 468888888899


Q ss_pred             HH-HHHHh--cCCCCEEEEcCCCCCChHHHHHhhcCCCCeE--------------EEeecCC----------CHHHHHhh
Q 024619           83 LA-AVTHL--LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV--------------VKRVNTC----------DLDEVASA  135 (265)
Q Consensus        83 l~-~~~~~--~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~--------------~~~~~~~----------d~~~l~~~  135 (265)
                      +. ++..+  ..+++.|++.++.|++.....   ....+..              +..++.+          |+++++++
T Consensus       117 ~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~  193 (439)
T 3dxv_A          117 NEAAYRAIVKATGRSGVIAFAGAYHGCTVGS---MAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEK  193 (439)
T ss_dssp             HHHHHHHHHHHHSCCEEEEETTCCCCSSHHH---HCC-------------CEEEECCCCSSSCBTTBTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCEEEEECCCCCCCcHHH---HhhcCCCchhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHH
Confidence            86 44443  346778888888887765332   1222211              2334443          58999998


Q ss_pred             c----CCCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCC-CCCcC-----CCCCCccEEEeccccc
Q 024619          136 I----GPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLSR-----PLELGADIVMHSATKF  201 (265)
Q Consensus       136 ~----~~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~~-~~~~~-----~~~~~~di~~~s~sK~  201 (265)
                      +    .+++++|++++++|++|.+.+    +++|.++|++||+++|+||+|+. +..+.     ......|++  |+||.
T Consensus       194 l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~~~di~--s~sK~  271 (439)
T 3dxv_A          194 LAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGFVPDIL--VLGKG  271 (439)
T ss_dssp             HHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTTCCCSEE--EECGG
T ss_pred             HHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcCCCCCEE--EEcch
Confidence            8    567889999999999999987    99999999999999999999962 21111     112345666  88999


Q ss_pred             cccCCCceeeEEEeechhH
Q 024619          202 IAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       202 ~~g~~g~~~G~v~~~~~~~  220 (265)
                      ++ + |+++|+++++++.+
T Consensus       272 ~~-~-G~riG~~~~~~~~~  288 (439)
T 3dxv_A          272 LG-G-GLPLSAVIAPAEIL  288 (439)
T ss_dssp             GG-T-TSCCEEEEEEHHHH
T ss_pred             hc-C-CcceEEEEECHHHH
Confidence            95 3 78999998876543

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=99.82  E-value=5e-20  Score=165.30  Aligned_cols=160  Identities=19%  Similarity=0.276  Sum_probs=129.8

Q ss_pred             hHHHHHHHHHhHhCCCceEEe-cchHHHHH-HHHHh----cCCCC-----EEEEcCCCCCChHHHHHhhcCCCCeEEEee
Q 024619           56 TRDALESLLAKLDKADRALCF-TSGMAALA-AVTHL----LGTGE-----EIVAGDDLYGGTDRLLSRVTPKTGVVVKRV  124 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~~~i~~-~~g~~al~-~~~~~----~~~g~-----~viv~~~~~~~~~~~~~~~~~~~g~~~~~~  124 (265)
                      .++++++++++++|.+..+++ ++|++++. +++.+    .++||     +|+++++.|+++.    ..++..|++++.+
T Consensus       108 l~~~l~~~la~~~g~~~~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~----~~~~~~G~~vv~v  183 (474)
T 1wyu_B          108 LMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNP----ATASMAGYQVREI  183 (474)
T ss_dssp             HHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHH----HHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHHHHCCCceeecChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhH----HHHHHCCCEEEEe
Confidence            488999999999999865545 55668875 34333    35787     9999999999887    3446678999999


Q ss_pred             cCC-----CHHHHHhhcCCCceEEEEecCCCCcccc-ccHHHHHHHHHHcCCEEEEeCCcCCCCCc--CCCCCCccEEEe
Q 024619          125 NTC-----DLDEVASAIGPWTKLVWVESPTNPRQQI-CDIRKIAEMAHAHGALLLVDNSIMSPVLS--RPLELGADIVMH  196 (265)
Q Consensus       125 ~~~-----d~~~l~~~~~~~~~~i~~~~~~np~G~~-~~l~~i~~~a~~~~~~li~D~~~~~~~~~--~~~~~~~di~~~  196 (265)
                      +.+     |++++++++.+++++|++++| ||+|.+ .++++|+++|+++|+++|+|++|+.+.++  .+...+.|+++.
T Consensus       184 ~~~~~~~~d~~~L~~~i~~~t~~v~~~~p-n~~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~~g~~~~~~~g~di~~~  262 (474)
T 1wyu_B          184 PSGPEGEVDLEALKRELGPHVAALMLTNP-NTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWARPGDMGFDVVHL  262 (474)
T ss_dssp             CBCTTSSBCHHHHHHHCSTTEEEEEECSS-CTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHHTCSEEEC
T ss_pred             cCCCCCCcCHHHHHHhhCCCceEEEEECC-CCCcccCCCHHHHHHHHHHcCCEEEEeCchhhhhccCCCcccCCCcEEEE
Confidence            875     899999999989999999998 689998 69999999999999999999999766542  233457899999


Q ss_pred             ccccccccCC---CceeeEEEeechhH
Q 024619          197 SATKFIAGHS---DVMAGVLAVKGERL  220 (265)
Q Consensus       197 s~sK~~~g~~---g~~~G~v~~~~~~~  220 (265)
                      |+||++++|.   |.++|+++++++.+
T Consensus       263 s~~K~~~~p~g~gG~~~G~~~~~~~l~  289 (474)
T 1wyu_B          263 NLHKTFTVPHGGGGPGSGPVGVKAHLA  289 (474)
T ss_dssp             CTTTTTCCCCTTSCCCCCCEEECGGGG
T ss_pred             eCccccccCCCCCCCCeEEEEEcHHHH
Confidence            9999997663   35689999988654

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=99.82  E-value=2.5e-20  Score=168.08  Aligned_cols=160  Identities=21%  Similarity=0.192  Sum_probs=129.0

Q ss_pred             hHHHHHHHHHhHhCCC----ceEEecchHHHHH-HHHHhcC-----CC---CEEEEcCCCCCChHHHHHhhcCCCCeEEE
Q 024619           56 TRDALESLLAKLDKAD----RALCFTSGMAALA-AVTHLLG-----TG---EEIVAGDDLYGGTDRLLSRVTPKTGVVVK  122 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~----~~i~~~~g~~al~-~~~~~~~-----~g---~~viv~~~~~~~~~~~~~~~~~~~g~~~~  122 (265)
                      ..+++++++++++|.+    ..+++++|++|+. ++..+.+     +|   ++|+++.+.|+++.    ..++..|++++
T Consensus       108 l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~~~~~Vi~~~~~h~~~~----~~~~~~G~~~~  183 (497)
T 3mc6_A          108 MESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFD----KAAYYFGMKLR  183 (497)
T ss_dssp             HHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSCCSSCEEEEETTSCHHHH----HHHHHSCCEEE
T ss_pred             HHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCccHHHH----HHHHHcCCeEE
Confidence            3678889999999876    4666667778885 5565543     45   89999999999886    44566789999


Q ss_pred             eecCC------CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCC-----------C--
Q 024619          123 RVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV-----------L--  183 (265)
Q Consensus       123 ~~~~~------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~-----------~--  183 (265)
                      .++.+      |++++++++.+++++|++++|+||+|.+.|+++|.++|+++|+++++|++|+.+.           .  
T Consensus       184 ~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~  263 (497)
T 3mc6_A          184 HVELDPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPL  263 (497)
T ss_dssp             EECBCTTTCSBCTTTTGGGCCSSEEEEEEETTCTTTCCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCC
T ss_pred             EEecCcccCcCCHHHHHHHHhhCCEEEEEECCCCCCCcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCcc
Confidence            88754      5899999999999999999999999999999999999999999999999997322           1  


Q ss_pred             cCCCCCCccEEEeccccccccCCCceeeEEEeechhHH
Q 024619          184 SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA  221 (265)
Q Consensus       184 ~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~  221 (265)
                      ......+.|+++.|++|++.++.+  +|+++++++.+.
T Consensus       264 ~~~~~~g~d~~~~s~~K~l~~~~~--~g~~~~~~~~~~  299 (497)
T 3mc6_A          264 LDFRVPGVTSISCDTHKYGFAPKG--SSVIMYRNSDLR  299 (497)
T ss_dssp             CSTTSTTCCEEEEETTTTTCCCSS--CEEEECSSHHHH
T ss_pred             ccccCCCCcEEEECchhhcCCCCC--ceeEEecCHHHH
Confidence            123345789999999999877765  588888876554

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=99.82  E-value=1.2e-19  Score=161.58  Aligned_cols=156  Identities=14%  Similarity=0.131  Sum_probs=119.3

Q ss_pred             ChhHHHHHHHHHhHhCCCceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC--C--
Q 024619           54 NPTRDALESLLAKLDKADRALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT--C--  127 (265)
Q Consensus        54 ~~~~~~l~~~l~~~~g~~~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~--  127 (265)
                      ....+++++.+++ +|.++.+++++|+ +++. ++.+++++||+|++++++|+++...+    ...|+++++++.  +  
T Consensus        56 ~~~~~~~~~~la~-~g~~~~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~~~----~~~G~~~~~v~~~~~~~  130 (446)
T 2x3l_A           56 EEVILKSMKQVEK-HSDYDGYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHAL----DISQQEGHFIETHQSPL  130 (446)
T ss_dssp             SSHHHHHHHHHCS-CTTEEEEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHHHH----HHHTCCEEECEEEECTT
T ss_pred             chHHHHHHHHHHh-cCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHHHH----HHcCCeEEEEeCeeccc
Confidence            3568899999999 9988777777775 8886 67778899999999999999987554    336777777765  3  


Q ss_pred             -------CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCC-C----cCCCCCCccEEE
Q 024619          128 -------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV-L----SRPLELGADIVM  195 (265)
Q Consensus       128 -------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~-~----~~~~~~~~di~~  195 (265)
                             |++++   +.+++++|++++ .|++|.+.|+++|+++|+++|+++++||+|+... +    ......+.|+++
T Consensus       131 ~~~~~~~d~~~l---~~~~~~~v~~~~-~n~~G~~~~l~~I~~l~~~~~~~livDea~~~~~~f~~~~~~~~~~g~Di~~  206 (446)
T 2x3l_A          131 TNHYNKVNLSRL---NNDGHKLVVLTY-PNYYGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDSTLNYQADYVV  206 (446)
T ss_dssp             TSSEEEEEC----------CCEEEEES-SCTTSCCCCHHHHHHHHHHTTCCEEEECTTCTTTTSTTSCCCGGGGTCSEEE
T ss_pred             cCcCCCCCHHHH---cCCCceEEEEEC-CCCCeEecCHHHHHHHHHhcCCeEEEcchhhhhhccCCCCCChHHcCCCEEE
Confidence                   34555   456789999999 5669999999999999999999999999998621 1    123344689999


Q ss_pred             eccccccccCCCceeeEEEeechhH
Q 024619          196 HSATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       196 ~s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                      .|+||++.++.|  +|+++++++.+
T Consensus       207 ~S~~K~l~~~~g--~g~l~~~~~~i  229 (446)
T 2x3l_A          207 QSFHKTLPALTM--GSVLYIHKNAP  229 (446)
T ss_dssp             ECHHHHSSSCTT--CEEEEEETTCT
T ss_pred             ECCccccccccc--cEEEEEcCCcC
Confidence            999998877766  59998887654

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=99.81  E-value=6e-19  Score=155.38  Aligned_cols=165  Identities=21%  Similarity=0.242  Sum_probs=115.0

Q ss_pred             hHHHH-HHHHHhHhCCCce-EEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhh-cCCCCeEEEeecCC----
Q 024619           56 TRDAL-ESLLAKLDKADRA-LCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRV-TPKTGVVVKRVNTC----  127 (265)
Q Consensus        56 ~~~~l-~~~l~~~~g~~~~-i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~----  127 (265)
                      ..+++ ++.+++++|.+.. +++++|++|+. ++..++++||+|++++|+|++........ ....+.+++.++.+    
T Consensus        78 ~~~~~a~~~~~~~~~~~~~~v~~~~Gs~a~~~al~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  157 (425)
T 3ecd_A           78 EVEALAIERVKRLFNAGHANVQPHSGAQANGAVMLALAKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTM  157 (425)
T ss_dssp             HHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECC------------------CEEEEECCCTTTS
T ss_pred             HHHHHHHHHHHHHhCCCCceeecCchHHHHHHHHHHccCCCCEEEEcccccccceecchhhhhcccceeeeecCCCcccC
Confidence            44444 4888999999866 45888888885 67778999999999999998732111111 12223355566544    


Q ss_pred             --CHHHHHhhcC-CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-----CCCCCCccEEEeccc
Q 024619          128 --DLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLELGADIVMHSAT  199 (265)
Q Consensus       128 --d~~~l~~~~~-~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~~~~~~di~~~s~s  199 (265)
                        |++++++++. +++++|++++|+||  ...++++|.++|++||+++|+||+|+.+...     .... ..|++++|+|
T Consensus       158 ~~d~~~l~~~i~~~~~~~v~~~~~~~~--~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~-~~di~~~s~s  234 (425)
T 3ecd_A          158 LIDYDQVEALAQQHKPSLIIAGFSAYP--RKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVE-HAHVVTSTTH  234 (425)
T ss_dssp             SCCHHHHHHHHHHHCCSEEEEECSCCC--SCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG-TCSEEEEESS
T ss_pred             ccCHHHHHHHHhhcCCcEEEEccccCC--CcCCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCchh-cCcEEEecCC
Confidence              8999999886 58999999988884  5789999999999999999999997655432     1222 3789999999


Q ss_pred             cccccCCCceeeEEEeechhHHHHHHH
Q 024619          200 KFIAGHSDVMAGVLAVKGERLAKELYF  226 (265)
Q Consensus       200 K~~~g~~g~~~G~v~~~~~~~~~~~~~  226 (265)
                      |+++|+   ++|+++.+++.+.+....
T Consensus       235 K~l~g~---~~g~~~~~~~~~~~~~~~  258 (425)
T 3ecd_A          235 KTLRGP---RGGFVLTNDEEIAKKINS  258 (425)
T ss_dssp             GGGCCC---SCEEEEESCHHHHHHHHH
T ss_pred             cccCCC---CcEEEEeCCHHHHHHHHh
Confidence            999554   479998886655554443

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=99.81  E-value=3e-19  Score=155.69  Aligned_cols=160  Identities=19%  Similarity=0.237  Sum_probs=126.3

Q ss_pred             hHHHHHHHHHhHhCCCceEEe-cchHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC--eEEEeec-------
Q 024619           56 TRDALESLLAKLDKADRALCF-TSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG--VVVKRVN-------  125 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~~~i~~-~~g~~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g--~~~~~~~-------  125 (265)
                      ..+++++.+++++|.++.+++ ++|++|+.++..++++||+|++.++.|+++.  +...++..|  .+++.++       
T Consensus        36 ~~~~~~~~l~~~~~~~~~v~~~~sgt~a~~~~~~~~~~gd~vi~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~g~~  113 (379)
T 3ke3_A           36 VMNDLLSNLKTVYNAEAAVIIPGSGTYGMEAVARQLTIDEDCLIIRNGWFSYR--WTQILEKGKFAKSSTVLTAERTEDT  113 (379)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHHHCTTCEEEEEECSHHHHH--HHHHHHHHCCSSEEEEEECEESSCC
T ss_pred             HHHHHHHHHHHHhCCCCEEEEcCChhHHHHHHHHhCCCCCeEEEEeCCchhHH--HHHHHHHhCCCCceEEEeccccccc
Confidence            578899999999998865555 5677998755567789999999999887653  223333333  3555553       


Q ss_pred             -------CCCHHHHHhhcC-CCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccE
Q 024619          126 -------TCDLDEVASAIG-PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADI  193 (265)
Q Consensus       126 -------~~d~~~l~~~~~-~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di  193 (265)
                             ..|++++++++. +++++|++++++|++|.+.|   +++|.++|+++|+++++|++++ |... .....+.|+
T Consensus       114 ~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g~~~~~~~~~~~d~  192 (379)
T 3ke3_A          114 EAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-GCVWLDMKELGIDV  192 (379)
T ss_dssp             SSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-TTCCCCHHHHTCSE
T ss_pred             cccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-CCccccccccCCCE
Confidence                   358899999885 57999999999999999999   9999999999999999999998 6543 223447899


Q ss_pred             EEeccccccccCCCceeeEEEeechhH
Q 024619          194 VMHSATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       194 ~~~s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                      +++|++|++++|+|  +|+++.+++.+
T Consensus       193 ~~~s~~K~l~~~~g--~g~~~~~~~~~  217 (379)
T 3ke3_A          193 LISAPQKGWSSTPC--AGLVMLSAAAI  217 (379)
T ss_dssp             EEECTTTTTCSCCC--EEEEEECHHHH
T ss_pred             EEecchhhcCCCCc--eEEEEECHHHH
Confidence            99999999988877  58888877544

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=99.81  E-value=6.3e-20  Score=162.57  Aligned_cols=182  Identities=18%  Similarity=0.173  Sum_probs=127.3

Q ss_pred             ccCCC--C---Ch-hHHHHHHHHHhHhC--CC-ceEEecch-HHHHH-HHHHh--------cCCCCEEEEcCCCCCChHH
Q 024619           48 DYTRS--G---NP-TRDALESLLAKLDK--AD-RALCFTSG-MAALA-AVTHL--------LGTGEEIVAGDDLYGGTDR  108 (265)
Q Consensus        48 ~y~~~--g---~~-~~~~l~~~l~~~~g--~~-~~i~~~~g-~~al~-~~~~~--------~~~g~~viv~~~~~~~~~~  108 (265)
                      .|++.  |   .+ +++++++++.+..+  .+ +.+++++| ++++. ++..+        +++||.|+++.|.|+.+..
T Consensus        91 ~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~  170 (427)
T 2hox_A           91 SYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFRE  170 (427)
T ss_dssp             SSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHH
T ss_pred             cCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEEeCCHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHH
Confidence            46654  5   44 46666666665433  22 45555555 58886 66778        8999999999999998875


Q ss_pred             HHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCC
Q 024619          109 LLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPL  187 (265)
Q Consensus       109 ~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~  187 (265)
                      .+    +..|.+++.+. .|++++++++.+++++|++++|+||||.+.+ + +   ++  ++..++|+++...... ...
T Consensus       171 ~~----~~~g~~~~~~~-~d~~~l~~~~~~~~k~v~l~~p~NPtG~~~~-~-~---l~--~~~~i~d~~~~~~~~s~~~~  238 (427)
T 2hox_A          171 QT----KYFDKKGYVWA-GNAANYVNVSNPEQYIEMVTSPNNPEGLLRH-A-V---IK--GCKSIYDMVYYWPHYTPIKY  238 (427)
T ss_dssp             HH----HHSCBTTEEEE-EEGGGGTTCSCGGGEEEEEESSCTTTCCCCC-C-S---ST--TCEEEEECTTCSTTTSCCCS
T ss_pred             HH----HHcCCeeeeec-CCHHHHHHhhcCCceEEEEcCCCCCcccccH-H-H---Hc--CCCEEEeecccCCCCCcccc
Confidence            44    44565555443 3678888888888999999999999999998 3 2   23  5678999887542211 111


Q ss_pred             CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHH
Q 024619          188 ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI  242 (265)
Q Consensus       188 ~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (265)
                      ..+.+++++||||.+ |++|+|+|+++++++.+.+.+...........+...+..
T Consensus       239 ~~~~~i~~~S~SK~~-g~~G~RiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a  292 (427)
T 2hox_A          239 KADEDILLFTMSKFT-GHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLR  292 (427)
T ss_dssp             CBCCSEEEEEHHHHT-SCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHH
T ss_pred             CCCceEEEEeChhcC-CCCCceEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence            256899999999998 778999999998655565656665555555566554443

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=99.81  E-value=1.6e-19  Score=158.19  Aligned_cols=159  Identities=22%  Similarity=0.233  Sum_probs=115.6

Q ss_pred             HHHHHHhHhCCCce-EEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCe--EEEeecC------CCH
Q 024619           60 LESLLAKLDKADRA-LCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV--VVKRVNT------CDL  129 (265)
Q Consensus        60 l~~~l~~~~g~~~~-i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~--~~~~~~~------~d~  129 (265)
                      +++++++++|.+.. +++++|++++. ++..++++||+|+++.|.|+++...+ ......|.  +++.+++      .|+
T Consensus        74 ~r~~la~~~g~~~~~i~~~sGt~a~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~d~  152 (405)
T 2vi8_A           74 ARERAKQLFGAEHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHG-SPVNFSGVQYNFVAYGVDPETHVIDY  152 (405)
T ss_dssp             HHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCTTTT-CTTSHHHHHSEEEEECBCTTTCSBCH
T ss_pred             HHHHHHHHhCCCceEEEecCcHHHHHHHHHHhcCCCCEEEEecccccchhccc-chhhhccceeEEEecccccccCCcCH
Confidence            45799999998854 45688898885 67777899999999999998874210 00122233  6666653      378


Q ss_pred             HHHHhhcCC-CceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcC---CCC-CCccEEEecccccccc
Q 024619          130 DEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR---PLE-LGADIVMHSATKFIAG  204 (265)
Q Consensus       130 ~~l~~~~~~-~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~---~~~-~~~di~~~s~sK~~~g  204 (265)
                      +++++++.+ ++++|+++ ++|. |...++++|.++|+++|+++|+||+|+.+....   ... ...|++++|+||+++|
T Consensus       153 ~~l~~~i~~~~~~~v~~~-~~~~-~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~~~g  230 (405)
T 2vi8_A          153 DDVREKARLHRPKLIVAA-AAAY-PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRG  230 (405)
T ss_dssp             HHHHHHHHHHCCSEEEEC-CSSC-CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCC
T ss_pred             HHHHHHHHhcCCeEEEEe-CCCC-CccCCHHHHHHHHHHcCCEEEEEccccccccccCcCCCccccCCEEEEeccccCCC
Confidence            999998875 78888874 4443 566789999999999999999999998543321   111 1578999999999976


Q ss_pred             CCCceeeEEEeechhHHHHHH
Q 024619          205 HSDVMAGVLAVKGERLAKELY  225 (265)
Q Consensus       205 ~~g~~~G~v~~~~~~~~~~~~  225 (265)
                      +.|   |+++++++ +.+.+.
T Consensus       231 ~~g---G~~~~~~~-~~~~l~  247 (405)
T 2vi8_A          231 PRG---GMILCQEQ-FAKQID  247 (405)
T ss_dssp             CSC---EEEEECHH-HHHHHH
T ss_pred             CCC---eEEEEcHH-HHHHHH
Confidence            765   88888754 434333

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=99.80  E-value=2.3e-19  Score=157.86  Aligned_cols=154  Identities=23%  Similarity=0.248  Sum_probs=111.0

Q ss_pred             HHHHHHHHHhHhCCCc-eEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC--eEEEeecC-----C
Q 024619           57 RDALESLLAKLDKADR-ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG--VVVKRVNT-----C  127 (265)
Q Consensus        57 ~~~l~~~l~~~~g~~~-~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g--~~~~~~~~-----~  127 (265)
                      .+.+++++++++|.+. .+++++|++++. ++..++++||+|+++.|.|+++.... ......|  ..++.++.     .
T Consensus        78 ~~~~~~~la~~~~~~~~~v~~~sGs~a~~~a~~~~~~~gd~v~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~  156 (420)
T 3gbx_A           78 EQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLQPGDTVLGMNLAQGGHLTHG-SPVNFSGKLYNIVPYGIDESGKI  156 (420)
T ss_dssp             HHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEEEEC-------------CHHHHSEEEEEEECTTCSC
T ss_pred             HHHHHHHHHHHhCCCCceeEecCcHHHHHHHHHHhcCCCCEEEecchhhcceeccc-hhhhhcccceeEEeccCCccCCc
Confidence            4455688999999884 456889998885 67888999999999999998743221 1112222  33333322     4


Q ss_pred             CHHHHHhhcCC-CceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCC-----cCCCCCCccEEEeccccc
Q 024619          128 DLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL-----SRPLELGADIVMHSATKF  201 (265)
Q Consensus       128 d~~~l~~~~~~-~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~-----~~~~~~~~di~~~s~sK~  201 (265)
                      |++++++++.+ ++++|++++|+||  ...++++|.++|++||+++|+||+|+.+..     ..... ..|++++|+||+
T Consensus       157 d~~~l~~~i~~~~~~~v~~~~~~~~--~~~~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~-~~di~~~s~sK~  233 (420)
T 3gbx_A          157 DYDEMAKLAKEHKPKMIIGGFSAYS--GVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVP-HAHVVTTTTHKT  233 (420)
T ss_dssp             CHHHHHHHHHHHCCSEEEECCTTCC--SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCSTT-TSSEEEEESSGG
T ss_pred             CHHHHHHHHHhcCCeEEEEecCccC--CccCHHHHHHHHHHcCCEEEEECCcchhceecccCCcccc-cCCEEEeecccC
Confidence            89999999875 6999999888886  478999999999999999999999875543     22222 489999999999


Q ss_pred             cccCCCceeeEEEeec
Q 024619          202 IAGHSDVMAGVLAVKG  217 (265)
Q Consensus       202 ~~g~~g~~~G~v~~~~  217 (265)
                      ++|+.   +|+++.++
T Consensus       234 ~~g~~---gg~~~~~~  246 (420)
T 3gbx_A          234 LAGPR---GGLILAKG  246 (420)
T ss_dssp             GCSCS---CEEEEESS
T ss_pred             CCCCC---ceEEEEcC
Confidence            97654   59998877

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=99.80  E-value=8e-19  Score=154.98  Aligned_cols=226  Identities=12%  Similarity=0.066  Sum_probs=138.3

Q ss_pred             eeEeeccCCC--CCCCCC-CCCeeeccccccCCCCCCCCCccCC--CCChhHHHHHHHHHhHhCCC---ceEEecchHHH
Q 024619           11 TLLMNFSNEF--DPYGAL-STPLYQTATFKQPSATENGPYDYTR--SGNPTRDALESLLAKLDKAD---RALCFTSGMAA   82 (265)
Q Consensus        11 ~~~~~~~~~~--~~~g~~-~~~~~~~~~~~~~~~~~~~~~~y~~--~g~~~~~~l~~~l~~~~g~~---~~i~~~~g~~a   82 (265)
                      ..+++|++..  .++|.. +|.+..+..-....    .. .|+.  ...+...++++.+++++|.+   +++++++|++|
T Consensus        42 ~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~----~~-~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea  116 (419)
T 2eo5_A           42 NKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQK----LA-HAAANDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEA  116 (419)
T ss_dssp             CEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTT----SC-CCSCSCSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHH
T ss_pred             CEEEEccCChhhhccCCCCCHHHHHHHHHHHhh----Cc-cccccccCCHHHHHHHHHHHHhCCCCcCCEEEEeCchHHH
Confidence            4688887222  368877 55555554322221    11 1322  23356899999999999863   46666667799


Q ss_pred             HH-HHHHhcC-CCCEEEEcCCCCCChHHHHHhhcC----------CCCeEEEeecCC---------------------CH
Q 024619           83 LA-AVTHLLG-TGEEIVAGDDLYGGTDRLLSRVTP----------KTGVVVKRVNTC---------------------DL  129 (265)
Q Consensus        83 l~-~~~~~~~-~g~~viv~~~~~~~~~~~~~~~~~----------~~g~~~~~~~~~---------------------d~  129 (265)
                      +. ++..+.. +|++|++.+|.|+++.........          ....+++.++.+                     |+
T Consensus       117 ~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~  196 (419)
T 2eo5_A          117 IEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVI  196 (419)
T ss_dssp             HHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhhHHHHH
Confidence            86 4544433 389999999999865543222111          111234444432                     36


Q ss_pred             HHHH-hhcC-----CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CCCCCccE
Q 024619          130 DEVA-SAIG-----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADI  193 (265)
Q Consensus       130 ~~l~-~~~~-----~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~~~~~di  193 (265)
                      ++++ +++.     +++++|++++.+||||.+.+    +++|.++|++||+++|+||+|. .+..+.     ......|+
T Consensus       197 ~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~  276 (419)
T 2eo5_A          197 EFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDV  276 (419)
T ss_dssp             HHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSE
T ss_pred             HHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhcCCCCCE
Confidence            7888 7775     35667777666678897655    9999999999999999999997 332221     11224565


Q ss_pred             EEeccccccccCCC-ceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619          194 VMHSATKFIAGHSD-VMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       194 ~~~s~sK~~~g~~g-~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      +  |+||.++ + | +++|+++++++.+ .. . .........++..+..+...++
T Consensus       277 ~--t~sK~~~-~-G~~riG~~~~~~~~~-~~-~-~~~~~t~~~n~~~~~aa~aal~  325 (419)
T 2eo5_A          277 I--TLAKALG-G-GIMPIGATIFRKDLD-FK-P-GMHSNTFGGNALACAIGSKVID  325 (419)
T ss_dssp             E--EECGGGG-T-TTSCCEEEEEEGGGC-CC--------CCCCCHHHHHHHHHHHH
T ss_pred             E--Eeccccc-C-CccceEEEEEchHhh-cC-C-cccCCCCCCCHHHHHHHHHHHH
Confidence            5  7899995 3 7 8899999887655 32 2 1222334455555554444443

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=99.80  E-value=6.9e-19  Score=156.90  Aligned_cols=157  Identities=11%  Similarity=-0.031  Sum_probs=125.1

Q ss_pred             hHHHHHHHHHhHhCCCc-------eEEecchHHHHH-HHHHhcC--------CC-----CEEEEcCCCCCChHHHHHhhc
Q 024619           56 TRDALESLLAKLDKADR-------ALCFTSGMAALA-AVTHLLG--------TG-----EEIVAGDDLYGGTDRLLSRVT  114 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~~-------~i~~~~g~~al~-~~~~~~~--------~g-----~~viv~~~~~~~~~~~~~~~~  114 (265)
                      ..+++++++++++|.+.       .+++++|++|+. +++++.+        +|     ++|++++ .|.++.    ..+
T Consensus        82 l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~h~~~~----~~~  156 (452)
T 2dgk_A           82 IDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWH----KFA  156 (452)
T ss_dssp             HHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-CCHHHH----HHH
T ss_pred             HHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-CcHHHH----HHH
Confidence            37788899999999762       567777778875 5555543        45     5899998 887775    555


Q ss_pred             CCCCeEEEeecCC------CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHc------CCEEEEeCCcCCCC
Q 024619          115 PKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH------GALLLVDNSIMSPV  182 (265)
Q Consensus       115 ~~~g~~~~~~~~~------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~------~~~li~D~~~~~~~  182 (265)
                      +..|++++.++.+      |++++++++.+++++|++++|+||||.+.|+++|.++|+++      |+++++|++|+.+.
T Consensus       157 ~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~  236 (452)
T 2dgk_A          157 RYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFL  236 (452)
T ss_dssp             HHTTCEEEECCCBTTBCSCCHHHHHHHCCTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGT
T ss_pred             HHcCceEEEEecCCCCCeECHHHHHHHHhhCCEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHH
Confidence            6679999999864      79999999998999999999999999999999999999995      99999999998754


Q ss_pred             C---cC--CC---CCCccEEEeccccccccCCCceeeEEEeechh
Q 024619          183 L---SR--PL---ELGADIVMHSATKFIAGHSDVMAGVLAVKGER  219 (265)
Q Consensus       183 ~---~~--~~---~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~  219 (265)
                      .   ..  ..   ..+.|+++.|++||+.+|.+  +|+++.++..
T Consensus       237 ~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~~~~--~G~~~~~~~~  279 (452)
T 2dgk_A          237 APFVAPDIVWDFRLPRVKSISASGHKFGLAPLG--CGWVIWRDEE  279 (452)
T ss_dssp             HHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSS--CEEEEESSGG
T ss_pred             HHhhCccchhhcCCCCCcEEEECcccccCCCCC--eEEEEEcCHH
Confidence            3   11  11   23689999999998877665  6999887653

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=99.80  E-value=3.9e-19  Score=160.93  Aligned_cols=169  Identities=11%  Similarity=0.004  Sum_probs=129.3

Q ss_pred             CCccCCC-CCh-hHHHHHHHHHhHhCCC----ceEEecchHHHHH-HHHHhcC--------------CCCEEEEcCCCCC
Q 024619           46 PYDYTRS-GNP-TRDALESLLAKLDKAD----RALCFTSGMAALA-AVTHLLG--------------TGEEIVAGDDLYG  104 (265)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~~----~~i~~~~g~~al~-~~~~~~~--------------~g~~viv~~~~~~  104 (265)
                      .+.|... +.. +.+++.+++++++|.+    ..+++++|++|+. ++..+.+              +++.|+++.+.|.
T Consensus       124 ~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~  203 (511)
T 3vp6_A          124 MFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHY  203 (511)
T ss_dssp             SSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCT
T ss_pred             CCCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchH
Confidence            3455544 222 3677888899999876    4567777777764 5444432              5678999999999


Q ss_pred             ChHHHHHhhcCCCCe---EEEeecCC-----CHHHHHhhcCCC------ceEEEEecCCCCccccccHHHHHHHHHHcCC
Q 024619          105 GTDRLLSRVTPKTGV---VVKRVNTC-----DLDEVASAIGPW------TKLVWVESPTNPRQQICDIRKIAEMAHAHGA  170 (265)
Q Consensus       105 ~~~~~~~~~~~~~g~---~~~~~~~~-----d~~~l~~~~~~~------~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~  170 (265)
                      ++...+    +..|+   +++.++.+     |++++++++.++      +++|++++++|++|.+.|+++|+++|++||+
T Consensus       204 s~~~~~----~~~g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~  279 (511)
T 3vp6_A          204 SIKKAG----AALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNL  279 (511)
T ss_dssp             HHHHHH----HHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTC
T ss_pred             HHHHHH----HHcCCCCCcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcCC
Confidence            887443    44555   77777755     899999998654      8899999999999999999999999999999


Q ss_pred             EEEEeCCcCCCCCcCC-------CCCCccEEEeccccccccCCCceeeEEEeechhH
Q 024619          171 LLLVDNSIMSPVLSRP-------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       171 ~li~D~~~~~~~~~~~-------~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                      ++++|++|+.+.+..+       ...+.|+++++++||+++|.|  +|+++.++...
T Consensus       280 ~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g--~g~l~~~~~~~  334 (511)
T 3vp6_A          280 WLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQ--CSAILVKEKGI  334 (511)
T ss_dssp             EEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSC--CEEEEESSTTH
T ss_pred             EEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcC--eEEEEEeCHHH
Confidence            9999999998776422       122569999999999988876  58777877654

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=99.80  E-value=1.4e-19  Score=159.82  Aligned_cols=201  Identities=13%  Similarity=0.135  Sum_probs=125.9

Q ss_pred             ceeEeeccCCCC---CCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHh-C-C-CceEEecchHHHH
Q 024619           10 STLLMNFSNEFD---PYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD-K-A-DRALCFTSGMAAL   83 (265)
Q Consensus        10 ~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~-g-~-~~~i~~~~g~~al   83 (265)
                      +..+++|+ ++.   ++|..++.+..+....... .......|.  ..+...++++.+++++ | . +.++++++|++|+
T Consensus        40 g~~~id~~-~~~~~~~lg~~~~~v~~a~~~~~~~-~~~~~~~~~--~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~  115 (426)
T 1sff_A           40 GREYLDFA-GGIAVLNTGHLHPKVVAAVEAQLKK-LSHTCFQVL--AYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAV  115 (426)
T ss_dssp             CCEEEESS-HHHHTCTTCBTCHHHHHHHHHHTTT-CSCCCTTTE--ECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHH
T ss_pred             CCEEEEcc-cChhhcccCCCCHHHHHHHHHHHHh-CCCcccccc--CCHHHHHHHHHHHHhCCcccccEEEEeCchHHHH
Confidence            35688887 443   6787444444333211111 111111122  2356888999999998 5 3 3466666667998


Q ss_pred             H-HHH---HhcCCCCEEEEcCCCCCChHHHHHhhcCC-------CCe---EEEeecCC----------CHHHHHhhcC--
Q 024619           84 A-AVT---HLLGTGEEIVAGDDLYGGTDRLLSRVTPK-------TGV---VVKRVNTC----------DLDEVASAIG--  137 (265)
Q Consensus        84 ~-~~~---~~~~~g~~viv~~~~~~~~~~~~~~~~~~-------~g~---~~~~~~~~----------d~~~l~~~~~--  137 (265)
                      . ++.   .+.++| .|++.+|.|+.+...+......       .+.   .++.++.+          |++++++++.  
T Consensus       116 ~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~  194 (426)
T 1sff_A          116 ENAVKIARAATKRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKND  194 (426)
T ss_dssp             HHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhc
Confidence            6 444   456776 8999999998765322222211       111   13444432          6788888775  


Q ss_pred             ---CCceEEEEe-cCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCC-CCCcC-----CCCCCccEEEeccccccc
Q 024619          138 ---PWTKLVWVE-SPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLSR-----PLELGADIVMHSATKFIA  203 (265)
Q Consensus       138 ---~~~~~i~~~-~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~~-~~~~~-----~~~~~~di~~~s~sK~~~  203 (265)
                         +++++|+++ +++| ||.+.+    +++|.++|++||+++|+||+|+. +..+.     ......|++  |+||++ 
T Consensus       195 ~~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~di~--s~sK~~-  270 (426)
T 1sff_A          195 AAPEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLT--TFAKSI-  270 (426)
T ss_dssp             CCGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEE--EECGGG-
T ss_pred             cCCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchhhhhhcCCCCCEE--EEcccc-
Confidence               467788774 4567 997766    99999999999999999999982 11111     112235554  889999 


Q ss_pred             cCCCceeeEEEeechhH
Q 024619          204 GHSDVMAGVLAVKGERL  220 (265)
Q Consensus       204 g~~g~~~G~v~~~~~~~  220 (265)
                      ++ |+++|+++++++.+
T Consensus       271 ~~-GlriG~~~~~~~~~  286 (426)
T 1sff_A          271 AG-GFPLAGVTGRAEVM  286 (426)
T ss_dssp             GT-SSCCEEEEEEHHHH
T ss_pred             cC-CCceEEEEEcHHHH
Confidence            45 89999999887543

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=99.80  E-value=3.6e-19  Score=158.69  Aligned_cols=199  Identities=15%  Similarity=0.123  Sum_probs=126.0

Q ss_pred             ceeEeeccCCC---CCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHh-CCCceEEecchHHHHH-
Q 024619           10 STLLMNFSNEF---DPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD-KADRALCFTSGMAALA-   84 (265)
Q Consensus        10 ~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~-g~~~~i~~~~g~~al~-   84 (265)
                      +..+++|+ ++   +++|..+|.+..+..-....   ...+.|   ..+.++++++++++++ +.+.++++++|++|+. 
T Consensus        56 g~~~iD~~-~~~~~~~lg~~~~~v~~a~~~~~~~---~~~~~~---~~~~~~~la~~l~~~~~~~~~v~~~~gg~eA~~~  128 (453)
T 2cy8_A           56 GNVYLDFF-GGHGALVLGHGHPRVNAAIAEALSH---GVQYAA---SHPLEVRWAERIVAAFPSIRKLRFTGSGTETTLL  128 (453)
T ss_dssp             CCEEEESC-TTTTSCTTCBTCHHHHHHHHHHHTT---TCSSCS---SCHHHHHHHHHHHHHCTTCSEEEEESCHHHHHHH
T ss_pred             CCEEEECc-ccHhhcccCCCCHHHHHHHHHHHHh---CCCCCC---CCHHHHHHHHHHHhhCCCCCEEEEeCCHHHHHHH
Confidence            35688997 44   77888544454443322221   111211   3356899999999888 5556778888889986 


Q ss_pred             HHHHh--cCCCCEEEEcCCCCCChHHHHHhhc-------CCCCe------EEEeecCCCHHHHHhhcC---CCceEEEEe
Q 024619           85 AVTHL--LGTGEEIVAGDDLYGGTDRLLSRVT-------PKTGV------VVKRVNTCDLDEVASAIG---PWTKLVWVE  146 (265)
Q Consensus        85 ~~~~~--~~~g~~viv~~~~~~~~~~~~~~~~-------~~~g~------~~~~~~~~d~~~l~~~~~---~~~~~i~~~  146 (265)
                      ++...  +.+++.|++.+|+|+++........       ...|+      .+..++..|++++++++.   +++++|+++
T Consensus       129 al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~e  208 (453)
T 2cy8_A          129 ALRVARAFTGRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRPDDIEGMREVFANHGSDIAAFIAE  208 (453)
T ss_dssp             HHHHHHHHHCCCEEEEECC----------------------------CGGGEEEECTTCHHHHHHHHHHHGGGEEEEEEC
T ss_pred             HHHHHHHhhCCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCCCCHHHHHHHHHhcCCCEEEEEEC
Confidence            44441  3345788888899987653221111       11233      244556679999998886   467888888


Q ss_pred             cCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCCCC-cCC-----CCCCccEEEeccccccccCCCceeeEEEee
Q 024619          147 SPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPVL-SRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVK  216 (265)
Q Consensus       147 ~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~~~~~-~~~-----~~~~~di~~~s~sK~~~g~~g~~~G~v~~~  216 (265)
                      +.+|++|.+.+    +++|.++|++||+++|+||+|+ +.. +..     .....|++  |++|+++ + |+++|+++++
T Consensus       209 p~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~~~g~~~~~~~~~~~~di~--s~sK~l~-~-G~~~G~v~~~  283 (453)
T 2cy8_A          209 PVGSHFGVTPVSDSFLREGAELARQYGALFILDEVIS-GFRVGNHGMQALLDVQPDLT--CLAKASA-G-GLPGGILGGR  283 (453)
T ss_dssp             SSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTT-TTTTCTTHHHHHHTCCCSEE--EEEGGGG-T-TSSCEEEEEC
T ss_pred             CCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcc-ccccCchhhhHHhCCCCcEE--EEChhhh-C-CcceEEEech
Confidence            77788998877    9999999999999999999998 332 111     12235765  7899995 3 6889999988


Q ss_pred             chhH
Q 024619          217 GERL  220 (265)
Q Consensus       217 ~~~~  220 (265)
                      ++.+
T Consensus       284 ~~~~  287 (453)
T 2cy8_A          284 EDVM  287 (453)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7543

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=99.80  E-value=2.1e-19  Score=160.45  Aligned_cols=161  Identities=12%  Similarity=0.078  Sum_probs=123.7

Q ss_pred             hHHHHHHHHHhHhCCCc-eEEecchH-HHHH-HHHHhcC--CCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC----
Q 024619           56 TRDALESLLAKLDKADR-ALCFTSGM-AALA-AVTHLLG--TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT----  126 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~~-~i~~~~g~-~al~-~~~~~~~--~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~----  126 (265)
                      ..+++++++++++|.+. ++++++|+ .++. ++..+..  +|+.|+++++.|+++.    ..++..|++++.++.    
T Consensus       134 ~~~~~~~~la~~~g~~~~~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~----~~~~~~G~~~~~v~~~~~~  209 (456)
T 2z67_A          134 LTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPI----KAVSFVGMNMRLVETVLDG  209 (456)
T ss_dssp             HHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH----HHHHHTTCEEEEECCEEET
T ss_pred             HHHHHHHHHHHHcCCCCCEEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHH----HHHHHcCCCceEEEEeccC
Confidence            36779999999999874 56666667 4553 4444333  6788999999998876    344557899988875    


Q ss_pred             ----CCHHHHHhhc-C----CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCC-----CCCc
Q 024619          127 ----CDLDEVASAI-G----PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPL-----ELGA  191 (265)
Q Consensus       127 ----~d~~~l~~~~-~----~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~-----~~~~  191 (265)
                          .|++++++++ .    .++.+|+++.++||+|.+.|+++|.++|+++|+++++|++|+....+ .+.     ..+.
T Consensus       210 ~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~~~~~~~~  289 (456)
T 2z67_A          210 DRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRV  289 (456)
T ss_dssp             TEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCC
T ss_pred             CCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHhhHHHHHhhCCCC
Confidence                2799999988 4    46778888999999999999999999999999999999998855442 111     1178


Q ss_pred             cEEEeccccccccCCCceeeEEEeechhHHH
Q 024619          192 DIVMHSATKFIAGHSDVMAGVLAVKGERLAK  222 (265)
Q Consensus       192 di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~  222 (265)
                      |+++.|++||+++|.|  +|+++.+++.+..
T Consensus       290 D~~~~s~hK~~~~p~g--~G~l~~~~~~~~~  318 (456)
T 2z67_A          290 DAVVSSSDKNLLTPIG--GGLVYSTDAEFIK  318 (456)
T ss_dssp             SEEEEEHHHHHCCCSS--CEEEEESCHHHHH
T ss_pred             CEEEEcCCCCcCCCCC--eEEEEEcCHHHHh
Confidence            9999999999877765  6999986554433

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=99.79  E-value=9.1e-19  Score=155.97  Aligned_cols=156  Identities=23%  Similarity=0.187  Sum_probs=117.4

Q ss_pred             HHHH-HHHHhHhCCCceEE-ecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCC--CCeEEEeecC------
Q 024619           58 DALE-SLLAKLDKADRALC-FTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPK--TGVVVKRVNT------  126 (265)
Q Consensus        58 ~~l~-~~l~~~~g~~~~i~-~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~--~g~~~~~~~~------  126 (265)
                      ++++ +++++++|.+...+ +++|++|+. ++..++++||+|++.+|+|+++.... .....  .+..++.++.      
T Consensus        93 e~~a~~~la~~~g~~~~~v~~~sGs~a~~~a~~~~~~~Gd~Vl~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~  171 (447)
T 3h7f_A           93 ENLARDRAKALFGAEFANVQPHSGAQANAAVLHALMSPGERLLGLDLANGGHLTHG-MRLNFSGKLYENGFYGVDPATHL  171 (447)
T ss_dssp             HHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGT-CTTSHHHHSSEEEEECCCTTTCS
T ss_pred             HHHHHHHHHHHcCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEecCcccccccchh-hhhhhcCCeeEEEEcCcCcccCC
Confidence            5555 99999999997666 888998885 77888999999999999998732100 00111  2335555542      


Q ss_pred             CCHHHHHhhcC-CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCC-----CcCCCCCCccEEEecccc
Q 024619          127 CDLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV-----LSRPLELGADIVMHSATK  200 (265)
Q Consensus       127 ~d~~~l~~~~~-~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~-----~~~~~~~~~di~~~s~sK  200 (265)
                      .|++++++++. .++++|++++++||++.  ++++|.++|+++|+++|+||+|..+.     ...+. .+.|+++.|+||
T Consensus       172 ~d~~~l~~~i~~~~~~~i~~~~~~~~~~~--~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~-~~~di~~~s~sK  248 (447)
T 3h7f_A          172 IDMDAVRATALEFRPKVIIAGWSAYPRVL--DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPV-PHADVVSTTVHK  248 (447)
T ss_dssp             CCHHHHHHHHHHHCCSEEEEECSSCCSCC--CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST-TTCSEEEEESSG
T ss_pred             cCHHHHHHHHHhcCCeEEEEcCCCCCCcc--CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCC-CCCcEEEecCCc
Confidence            48999999885 47889999999998876  99999999999999999999986543     22222 357999999999


Q ss_pred             ccccCCCceeeEEEeechhH
Q 024619          201 FIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       201 ~~~g~~g~~~G~v~~~~~~~  220 (265)
                      +++||   ++|+++.+++..
T Consensus       249 ~l~G~---~gG~i~~~~~~~  265 (447)
T 3h7f_A          249 TLGGG---RSGLIVGKQQYA  265 (447)
T ss_dssp             GGCCC---SCEEEEECGGGH
T ss_pred             CCCCC---CeEEEEECHHHH
Confidence            99655   469998877443

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=99.79  E-value=1.3e-18  Score=163.72  Aligned_cols=156  Identities=15%  Similarity=0.134  Sum_probs=125.3

Q ss_pred             hhHHHHHHHHHhHhCCCceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-----
Q 024619           55 PTRDALESLLAKLDKADRALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----  127 (265)
                      ....+.++.+++++|.+..+++++|+ +++. ++.+++++||+|+++.++|.++...+    +..|+++++++..     
T Consensus       205 g~v~~~ee~la~l~G~d~~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~~~----~~~G~~~v~v~~~~~~~g  280 (755)
T 2vyc_A          205 GAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGL----MLTGAKPVYMVPSRNRYG  280 (755)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHH----HHHCCEEEEECCCBCTTS
T ss_pred             cHHHHHHHHHHHHhCCCceEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHH----HHcCCEEEEEeCCCCccc
Confidence            35788999999999999888888886 7775 77888999999999999999887543    4468888888642     


Q ss_pred             ----------CHHHHHhhcCC--Cce--------EEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc---
Q 024619          128 ----------DLDEVASAIGP--WTK--------LVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS---  184 (265)
Q Consensus       128 ----------d~~~l~~~~~~--~~~--------~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~---  184 (265)
                                |++++++++.+  +++        ++++++| |++|.+.|+++|+++|+++|+++++|++|+.+...   
T Consensus       281 ~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~~~~livDeA~~~~~~~~~~  359 (755)
T 2vyc_A          281 IIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPI  359 (755)
T ss_dssp             CBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTTCSEEEEECTTCTTGGGCGG
T ss_pred             cccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHcCCEEEEECcCchhcccCcc
Confidence                      78999988853  344        8999998 79999999999999999999999999999753211   


Q ss_pred             ----CCCCCC--ccE------EEeccccccccCCCceeeEEEeech
Q 024619          185 ----RPLELG--ADI------VMHSATKFIAGHSDVMAGVLAVKGE  218 (265)
Q Consensus       185 ----~~~~~~--~di------~~~s~sK~~~g~~g~~~G~v~~~~~  218 (265)
                          .+. .+  .|+      +++|+||+++|+.+  +|+++.++.
T Consensus       360 ~~~~~~~-~g~~aD~~~~~~iv~~S~hK~L~g~~~--g~~i~~~~~  402 (755)
T 2vyc_A          360 YADHYAM-RGEPGDHNGPTVFATHSTHKLLNALSQ--ASYIHVREG  402 (755)
T ss_dssp             GTTSSSS-CSCCCCCSSBEEEEEEETTTSSSCCTT--CEEEEEECC
T ss_pred             cCCcchh-cCCcCCccCCCeEEEECccccccCcCC--eeeeeecCc
Confidence                121 33  455      99999999977764  588877665

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=99.79  E-value=6.2e-19  Score=157.14  Aligned_cols=201  Identities=17%  Similarity=0.121  Sum_probs=134.8

Q ss_pred             ceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CChhHHHHHHHHHhHhCCC-ceEEecchHHHHH-
Q 024619           10 STLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLDKAD-RALCFTSGMAALA-   84 (265)
Q Consensus        10 ~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~g~~-~~i~~~~g~~al~-   84 (265)
                      +.++++|+++  ..++|..+|.+..+..-....    ..+ +... ..+.+.+++++++++++.+ +++++++|++|+. 
T Consensus        48 g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~----~~~-~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~ggseA~~~  122 (452)
T 3n5m_A           48 GKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQT----LSY-FPMSQSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANET  122 (452)
T ss_dssp             CCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTT----CCC-CCTTSEEHHHHHHHHHHHHHHTSCEEEEEESSHHHHHHH
T ss_pred             CCEEEECCcchhhccCCCCCHHHHHHHHHHHHh----cCC-cccccCCHHHHHHHHHHHHhCCCCceEEEeCchHHHHHH
Confidence            4678999832  388998766666654322221    112 1112 2256999999999998754 4667777789986 


Q ss_pred             HHHHhc-----C---CCCEEEEcCCCCCChHHHHHhhcCC---------CCeEEEeecC--------CC---------HH
Q 024619           85 AVTHLL-----G---TGEEIVAGDDLYGGTDRLLSRVTPK---------TGVVVKRVNT--------CD---------LD  130 (265)
Q Consensus        85 ~~~~~~-----~---~g~~viv~~~~~~~~~~~~~~~~~~---------~g~~~~~~~~--------~d---------~~  130 (265)
                      ++..+.     .   ++++|++.+|+|+++..........         ....+..++.        .|         ++
T Consensus       123 al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (452)
T 3n5m_A          123 AFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVK  202 (452)
T ss_dssp             HHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHH
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHH
Confidence            555554     4   7899999999998875332121110         0112233332        23         88


Q ss_pred             HHHhhcC----CCceEEEEecC-CCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CCCCCccEEE
Q 024619          131 EVASAIG----PWTKLVWVESP-TNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVM  195 (265)
Q Consensus       131 ~l~~~~~----~~~~~i~~~~~-~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~~~~~di~~  195 (265)
                      ++++++.    +++++|+++++ +| +|.+.+    +++|.++|++||+++|+||+|. .+..+.     ......|++ 
T Consensus       203 ~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~~di~-  280 (452)
T 3n5m_A          203 EVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKAFGFMNYDVKPDII-  280 (452)
T ss_dssp             HHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEE-
T ss_pred             HHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccccchhhhcCCCCCEE-
Confidence            8988886    56888999998 89 998876    9999999999999999999987 332221     112235665 


Q ss_pred             eccccccccCCC-ceeeEEEeechhH
Q 024619          196 HSATKFIAGHSD-VMAGVLAVKGERL  220 (265)
Q Consensus       196 ~s~sK~~~g~~g-~~~G~v~~~~~~~  220 (265)
                       ++||.++ . | ++.|+++++++.+
T Consensus       281 -t~sK~l~-~-G~~~ig~~~~~~~i~  303 (452)
T 3n5m_A          281 -TMAKGIT-S-AYLPLSATAVKREIY  303 (452)
T ss_dssp             -EECGGGG-T-TSSCCEEEEEEHHHH
T ss_pred             -eeccccc-C-CCcceEEEEECHHHH
Confidence             5789994 4 7 8899998876543

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=99.79  E-value=1.6e-18  Score=154.22  Aligned_cols=203  Identities=14%  Similarity=0.118  Sum_probs=133.5

Q ss_pred             ceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCC--CceEEecchHHHHH-
Q 024619           10 STLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA--DRALCFTSGMAALA-   84 (265)
Q Consensus        10 ~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~--~~~i~~~~g~~al~-   84 (265)
                      +..+++|++  +..++|..++.+..+..-....   .....+.....+...++++.++++++.  +.++++++|++|+. 
T Consensus        49 g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~---~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggsea~~~  125 (449)
T 3a8u_X           49 GRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLST---LDYSPGFQYGHPLSFQLAEKITDLTPGNLNHVFFTDSGSECALT  125 (449)
T ss_dssp             CCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTT---CSCCCSSSCCCHHHHHHHHHHHTTSSTTEEEEEEESSHHHHHHH
T ss_pred             CCEEEECCccHhhccCCCCCHHHHHHHHHHHHh---CCCccccccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHH
Confidence            356788852  2256887755555554322221   110111122335689999999999854  45777777889986 


Q ss_pred             HHHHhcC--------CCCEEEEcCCCCCChHHHHHhhcC-----------CCCeEEEeecC--------CC--------H
Q 024619           85 AVTHLLG--------TGEEIVAGDDLYGGTDRLLSRVTP-----------KTGVVVKRVNT--------CD--------L  129 (265)
Q Consensus        85 ~~~~~~~--------~g~~viv~~~~~~~~~~~~~~~~~-----------~~g~~~~~~~~--------~d--------~  129 (265)
                      ++..+..        +||+|++.+|.|+++.........           ..++..+.++.        .|        +
T Consensus       126 al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~  205 (449)
T 3a8u_X          126 AVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALA  205 (449)
T ss_dssp             HHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHH
Confidence            5554443        679999999999876432212221           12455555442        15        8


Q ss_pred             HHHHhhcC----CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcCC-----CCCCccEEE
Q 024619          130 DEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSRP-----LELGADIVM  195 (265)
Q Consensus       130 ~~l~~~~~----~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~~-----~~~~~di~~  195 (265)
                      +++++++.    +++++|++++.+|++|.+.+    +++|.++|++||+++|+||+|. .+..+..     .....|++ 
T Consensus       206 ~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~di~-  284 (449)
T 3a8u_X          206 DELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMFGADSFGVTPDLM-  284 (449)
T ss_dssp             HHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE-
T ss_pred             HHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCcchhhhhcCCCCCEE-
Confidence            88888886    46778887777788998887    9999999999999999999994 5533221     12235765 


Q ss_pred             eccccccccCCC-ceeeEEEeechh
Q 024619          196 HSATKFIAGHSD-VMAGVLAVKGER  219 (265)
Q Consensus       196 ~s~sK~~~g~~g-~~~G~v~~~~~~  219 (265)
                       |+||++++  | ++.|+++++++.
T Consensus       285 -s~sK~l~~--G~~~~G~~~~~~~~  306 (449)
T 3a8u_X          285 -CIAKQVTN--GAIPMGAVIASTEI  306 (449)
T ss_dssp             -EECGGGGT--TSSCCEEEEEEHHH
T ss_pred             -EEcccccC--CCCceEEEEECHHH
Confidence             78899953  5 788999887643

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=99.79  E-value=3.2e-19  Score=157.91  Aligned_cols=229  Identities=10%  Similarity=0.017  Sum_probs=136.5

Q ss_pred             ceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CC-hhHHHHHHHHHhHhCC--CceEEecchHHHH
Q 024619           10 STLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GN-PTRDALESLLAKLDKA--DRALCFTSGMAAL   83 (265)
Q Consensus        10 ~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~-~~~~~l~~~l~~~~g~--~~~i~~~~g~~al   83 (265)
                      +.++++|+++  .+++|..+|.+..+..-....    .. .|... +. +.+++++++++++++.  +.++++++|++|+
T Consensus        28 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~----~~-~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~  102 (430)
T 3i4j_A           28 GRRYLDGSSGALVANIGHGRAEVGERMAAQAAR----LP-FVHGSQFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEAT  102 (430)
T ss_dssp             SCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHH----CC-CCCTTTCEEHHHHHHHHHHHHHTTCTTCEEEEESSHHHHH
T ss_pred             CCEEEECCCchhccccCCCCHHHHHHHHHHHHh----cc-cccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHH
Confidence            4578999843  678998766555554322111    11 23322 22 4699999999999864  4677777788998


Q ss_pred             H-HHHHhc--------CCCCEEEEcCCCCCChHHHHHhhcCCCC---------e--EEEeecCC--------CHHHHHhh
Q 024619           84 A-AVTHLL--------GTGEEIVAGDDLYGGTDRLLSRVTPKTG---------V--VVKRVNTC--------DLDEVASA  135 (265)
Q Consensus        84 ~-~~~~~~--------~~g~~viv~~~~~~~~~~~~~~~~~~~g---------~--~~~~~~~~--------d~~~l~~~  135 (265)
                      . ++..+.        .+++.|++.+|.|+++............         .  .+..++.+        |+++++++
T Consensus       103 ~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~  182 (430)
T 3i4j_A          103 ESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRAL  182 (430)
T ss_dssp             HHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCCCTTSCHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHH
Confidence            6 555554        4478999999999887632211111000         0  22233333        34777777


Q ss_pred             cC----CCceEEEEecCCC-Ccccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CC-CCCccEEEeccc
Q 024619          136 IG----PWTKLVWVESPTN-PRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PL-ELGADIVMHSAT  199 (265)
Q Consensus       136 ~~----~~~~~i~~~~~~n-p~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~-~~~~di~~~s~s  199 (265)
                      +.    +++++|++++++| ++|.+.+    +++|.++|++||+++|+||+|. .+..+.     .. ....|++  ++|
T Consensus       183 l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~~~~~~~~~~~di~--t~s  260 (430)
T 3i4j_A          183 LEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRWSGVTPDIA--VLG  260 (430)
T ss_dssp             HHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTTCCCSEE--EEC
T ss_pred             HHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhhhhcCCCCcEE--EEc
Confidence            75    4567788888888 8998766    9999999999999999999997 322221     11 2235555  578


Q ss_pred             cccccCCC-ceeeEEEeechhHHHHHHHH----HHhccCCCChhHHHHHHhccC
Q 024619          200 KFIAGHSD-VMAGVLAVKGERLAKELYFL----QNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       200 K~~~g~~g-~~~G~v~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      |.++ . | ++.|+++++++.+ +.+...    ........++..+...+..|+
T Consensus       261 K~l~-~-G~~r~G~~~~~~~i~-~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~  311 (430)
T 3i4j_A          261 KGLA-A-GYAPLAGLLAAPQVY-ETVMGGSGAFMHGFTYAGHPVSVAAGLSVLD  311 (430)
T ss_dssp             GGGT-T-TSSCCEEEEECHHHH-HHHHHTTCBCCCCCTTTTCHHHHHHHHHHHH
T ss_pred             cccc-C-CccccEEEEECHHHH-HHHhccCCcccccCCCCCCHHHHHHHHHHHH
Confidence            9995 3 8 8999998866543 433321    122333455555554444443

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=99.79  E-value=1.9e-18  Score=160.44  Aligned_cols=155  Identities=17%  Similarity=0.178  Sum_probs=124.9

Q ss_pred             hhHHHHHHHHHhHhCCCceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-----
Q 024619           55 PTRDALESLLAKLDKADRALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----  127 (265)
                      ....++++.+++++|++..+++++|+ +|+. ++.+++++||+|++++++|.++...    +...|+++++++..     
T Consensus       195 g~i~eaE~~lA~~fGa~~a~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~~----l~lsGa~pv~v~~~~~~~g  270 (715)
T 3n75_A          195 GPHKEAEQYIARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHL----MMMSDVTPIYFRPTRNAYG  270 (715)
T ss_dssp             THHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHH----HHHSCCEEEEECCCBCTTC
T ss_pred             HHHHHHHHHHHHHhCCCCceEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHHH----HHHcCCEEEEEeccccccc
Confidence            35899999999999999999999996 7874 7888999999999999999998743    45678999888742     


Q ss_pred             ----------CHHHHHhhcC--CCce---EEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCC-c------C
Q 024619          128 ----------DLDEVASAIG--PWTK---LVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL-S------R  185 (265)
Q Consensus       128 ----------d~~~l~~~~~--~~~~---~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~-~------~  185 (265)
                                |++++++++.  ++++   ++++++| |++|.+.|+++|.++|++++  +++||+|+.+.. .      .
T Consensus       271 i~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~~--livDEAH~~~~~f~~~~~~~~  347 (715)
T 3n75_A          271 ILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKC  347 (715)
T ss_dssp             CBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHHHHCCCSE--EEEECTTCTTGGGSGGGTTSS
T ss_pred             cccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHHHHhCcCc--EEEccccccccccCCcccccc
Confidence                      7899999886  3344   8999999 99999999999999998763  799999986641 1      1


Q ss_pred             CCCCC--ccEE---EeccccccccCCCceeeEEEeech
Q 024619          186 PLELG--ADIV---MHSATKFIAGHSDVMAGVLAVKGE  218 (265)
Q Consensus       186 ~~~~~--~di~---~~s~sK~~~g~~g~~~G~v~~~~~  218 (265)
                      ....+  .|++   ++|+||+++|+.+  +|++.+++.
T Consensus       348 al~~g~~aD~vii~~~S~hKtL~gltq--gs~i~v~~~  383 (715)
T 3n75_A          348 GMSGGRVEGKVIYETQSTHKLLAAFSQ--ASMIHVKGD  383 (715)
T ss_dssp             TTSSSCCTTCEEEEEECHHHHSSCCTT--CEEEEEESC
T ss_pred             ccccCcCCCEEEEEEecccccccCCCC--eeEEEeCch
Confidence            22222  5655   9999999977643  688888765

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=99.78  E-value=1.7e-18  Score=153.14  Aligned_cols=203  Identities=14%  Similarity=0.091  Sum_probs=131.2

Q ss_pred             eeEeeccCCC--CCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhC--CCceEEecchHHHHH-H
Q 024619           11 TLLMNFSNEF--DPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK--ADRALCFTSGMAALA-A   85 (265)
Q Consensus        11 ~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g--~~~~i~~~~g~~al~-~   85 (265)
                      ..+++|++..  .++|..+|.+..+..-.... .  ..+.++....+...++++.++++++  .+.++++++|++|+. +
T Consensus        43 ~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~-~--~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggtea~~~a  119 (429)
T 1s0a_A           43 RRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDA-M--SHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVA  119 (429)
T ss_dssp             CEEEESSTTTTTCTTCBSCHHHHHHHHHHHHH-C--SCCCCSSEECHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHH
T ss_pred             CEEEEcCccHhhccCCCCCHHHHHHHHHHHHh-c--ccccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHH
Confidence            4678887322  46786544454443322111 0  1111111133568889999999995  446777777789986 4


Q ss_pred             HHHhc---C----CCCEEEEcCCCCCChHHHHHhhcC------------CCCeEEEeecC---------CCHHHHHhhcC
Q 024619           86 VTHLL---G----TGEEIVAGDDLYGGTDRLLSRVTP------------KTGVVVKRVNT---------CDLDEVASAIG  137 (265)
Q Consensus        86 ~~~~~---~----~g~~viv~~~~~~~~~~~~~~~~~------------~~g~~~~~~~~---------~d~~~l~~~~~  137 (265)
                      +..+.   +    +|++|++.+|.|+++.........            ..+...+.++.         .|++++++++.
T Consensus       120 i~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~  199 (429)
T 1s0a_A          120 MKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMA  199 (429)
T ss_dssp             HHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHH
T ss_pred             HHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHH
Confidence            44332   2    689999999999876533212111            11345555542         36888888876


Q ss_pred             ---CCceEEEEecC-CCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CCCCCccEEEeccccccc
Q 024619          138 ---PWTKLVWVESP-TNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATKFIA  203 (265)
Q Consensus       138 ---~~~~~i~~~~~-~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~~~~~di~~~s~sK~~~  203 (265)
                         +++++|+++++ +||||.+.+    +++|.++|++||+++|+||+|+ .+..+.     ......|++  |+||+++
T Consensus       200 ~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~~~~~~~~~~d~~--t~sK~l~  277 (429)
T 1s0a_A          200 AHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDIL--CLGKALT  277 (429)
T ss_dssp             HHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGG
T ss_pred             hCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHHHhhhcCCCCCEE--Eeccccc
Confidence               46777777777 799998766    9999999999999999999997 332221     112345665  6789985


Q ss_pred             cCCC-ceeeEEEeechhH
Q 024619          204 GHSD-VMAGVLAVKGERL  220 (265)
Q Consensus       204 g~~g-~~~G~v~~~~~~~  220 (265)
                      +  | +++|+++++++.+
T Consensus       278 ~--G~~~iG~~~~~~~~~  293 (429)
T 1s0a_A          278 G--GTMTLSATLTTREVA  293 (429)
T ss_dssp             T--SSSCCEEEEECHHHH
T ss_pred             C--CCccceEEEeCHHHH
Confidence            3  6 7889998876443

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=99.78  E-value=1.6e-18  Score=152.88  Aligned_cols=201  Identities=13%  Similarity=0.041  Sum_probs=131.5

Q ss_pred             EeeccCCCCC---CCCCCCCeeeccccccCC-CCCCCCCccCCC-CChh-HHHHHHHHHhHhCCC---ceEEecchHHHH
Q 024619           13 LMNFSNEFDP---YGALSTPLYQTATFKQPS-ATENGPYDYTRS-GNPT-RDALESLLAKLDKAD---RALCFTSGMAAL   83 (265)
Q Consensus        13 ~~~~~~~~~~---~g~~~~~~~~~~~~~~~~-~~~~~~~~y~~~-g~~~-~~~l~~~l~~~~g~~---~~i~~~~g~~al   83 (265)
                      -||++ ..-|   .|  .+|+++....+... ...+....|.+. |.|. ++++.+.+.......   ..+.+.+|+.|+
T Consensus        46 kinLg-vG~y~d~~g--~~~vl~~Vk~A~~~~~~~~~~~~Y~p~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~  122 (420)
T 4h51_A           46 KANLV-IGAYRDEQG--RPYPLRVVRKAEQLLLDMNLDYEYLPISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTGAV  122 (420)
T ss_dssp             CEECC-SCCCBCTTS--CBCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHHHH
T ss_pred             CEEee-cCcccCCCC--CCCCCHHHHHHHHHHhcCCCCCCCCCcCChHHHHHHHHHHhcCCCccccccceeeecCchHHH
Confidence            68888 5433   33  34444433211111 122334579988 9985 777777664322222   233345566665


Q ss_pred             H-HH----HHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEE-eecC-------CCHHHHHhhc---CCCceEEEEec
Q 024619           84 A-AV----THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVK-RVNT-------CDLDEVASAI---GPWTKLVWVES  147 (265)
Q Consensus        84 ~-~~----~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~-~~~~-------~d~~~l~~~~---~~~~~~i~~~~  147 (265)
                      . ++    ..+.+|||+|++++|+|+.+...+    +..|.+.+ ..+.       .|.+.+.+.+   .++++++++++
T Consensus       123 ~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~----~~aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~vll~~~  198 (420)
T 4h51_A          123 SLGAKLLTRVFDAETTPIYLSDPTWPNHYGVV----KAAGWKNICTYAYYDPKTVSLNFEGMKKDILAAPDGSVFILHQC  198 (420)
T ss_dssp             HHHHHHHTTTSCTTTSCEEEEESCCTHHHHHH----HHTTCCCEEEEECEEGGGTEECHHHHHHHHHHSCSSCEEEEESS
T ss_pred             HHHHHHHHHhcCCCCCEEEEecCCchhHHHHH----HHcCCeEEEeeccccccccCCCHHHHHHHHhccCCCcEEEEeCC
Confidence            3 22    234679999999999999997444    55665432 2221       1566666554   46788889999


Q ss_pred             CCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCcCC-----------CCCCccEEEeccccccccCCCceeeEE
Q 024619          148 PTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSRP-----------LELGADIVMHSATKFIAGHSDVMAGVL  213 (265)
Q Consensus       148 ~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~~~-----------~~~~~di~~~s~sK~~~g~~g~~~G~v  213 (265)
                      ||||||...+   +++|+++|+++++++++|++|....++..           ......+++.|+||.+ +..|+|+|++
T Consensus       199 p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~-~~~G~RvG~~  277 (420)
T 4h51_A          199 AHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNM-GLYSERAGTL  277 (420)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTS-CCGGGCEEEE
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEecccccc-ccccCceEEE
Confidence            9999999964   78999999999999999999975544311           1223568999999999 7789999999


Q ss_pred             EeechhHH
Q 024619          214 AVKGERLA  221 (265)
Q Consensus       214 ~~~~~~~~  221 (265)
                      ++......
T Consensus       278 ~~~~~~~~  285 (420)
T 4h51_A          278 SLLLKDKT  285 (420)
T ss_dssp             EEECSCHH
T ss_pred             EecccCHH
Confidence            88765443

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=99.78  E-value=4.9e-19  Score=156.98  Aligned_cols=201  Identities=15%  Similarity=0.153  Sum_probs=134.8

Q ss_pred             ceeEeeccCCC--CCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHh-CCCceEEecchHHHHH-H
Q 024619           10 STLLMNFSNEF--DPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD-KADRALCFTSGMAALA-A   85 (265)
Q Consensus        10 ~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~-g~~~~i~~~~g~~al~-~   85 (265)
                      +..+++|++..  .++|..+|.+..+..-....   ...+.|   ..+...++++++++++ +.+.++++++|++|+. +
T Consensus        55 g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~---~~~~~~---~~~~~~~l~~~la~~~~~~~~v~~~~sgseA~~~a  128 (434)
T 2epj_A           55 GARIVDLVLAYGPLILGHKHPRVLEAVEEALAR---GWLYGA---PGEAEVLLAEKILGYVKRGGMIRFVNSGTEATMTA  128 (434)
T ss_dssp             CCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHT---CSCCSS---CCHHHHHHHHHHHHHHCTTCEEEEESSHHHHHHHH
T ss_pred             CCEEEEcccchhcccCCCCCHHHHHHHHHHHHh---CCCCCC---CCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHH
Confidence            35688997322  57888444444443222111   111222   3356889999999999 7777888888999986 4


Q ss_pred             HHH--hcCCCCEEEEcCCCCCChHHHHHhhc----------CCCCe------EEEeecCCCHHHHHhhcC---CCceEEE
Q 024619           86 VTH--LLGTGEEIVAGDDLYGGTDRLLSRVT----------PKTGV------VVKRVNTCDLDEVASAIG---PWTKLVW  144 (265)
Q Consensus        86 ~~~--~~~~g~~viv~~~~~~~~~~~~~~~~----------~~~g~------~~~~~~~~d~~~l~~~~~---~~~~~i~  144 (265)
                      +..  .+.+++.|++.+++|+++........          ...|+      ++..++..|++++++++.   +++++|+
T Consensus       129 l~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi  208 (434)
T 2epj_A          129 IRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYNDVEALERVFAEYGDRIAGVI  208 (434)
T ss_dssp             HHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEE
T ss_pred             HHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCCCCHHHHHHHHHhCCCCEEEEE
Confidence            443  14456788888899987642110000          11233      355666679999998886   3678888


Q ss_pred             EecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCCCCcCC-----CCCCccEEEeccccccccCCCceeeEEEe
Q 024619          145 VESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAV  215 (265)
Q Consensus       145 ~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~~~~~~~~-----~~~~~di~~~s~sK~~~g~~g~~~G~v~~  215 (265)
                      +++.++++|.+.+    +++|.++|++||+++|+||+|+....+..     .....|++  |+||+++ + |+++|++++
T Consensus       209 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g~~~~~~~~~~~~di~--s~sK~l~-~-G~~~G~v~~  284 (434)
T 2epj_A          209 VEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGFRLGLEGAQGYFNIEGDII--VLGKIIG-G-GFPVGAVAG  284 (434)
T ss_dssp             ECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTTTSSTTHHHHHHTCCCSEE--EEEGGGG-T-TSSCEEEEE
T ss_pred             EeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhceeCCcchhhHHhCCCCCee--eecchhc-C-Ccceeeeee
Confidence            8888888999887    99999999999999999999982211111     12246764  7899995 4 688999998


Q ss_pred             echhH
Q 024619          216 KGERL  220 (265)
Q Consensus       216 ~~~~~  220 (265)
                      +++.+
T Consensus       285 ~~~~~  289 (434)
T 2epj_A          285 SREVM  289 (434)
T ss_dssp             CHHHH
T ss_pred             cHHHH
Confidence            76443

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.78  E-value=2.5e-19  Score=158.84  Aligned_cols=199  Identities=17%  Similarity=0.186  Sum_probs=133.9

Q ss_pred             cceeEeeccCCC--CCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHh-CCCceEEecchHHHHH-
Q 024619            9 VSTLLMNFSNEF--DPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD-KADRALCFTSGMAALA-   84 (265)
Q Consensus         9 ~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~-g~~~~i~~~~g~~al~-   84 (265)
                      .+.++++|+++.  ..+|..+|.+..+..-....   ...+.|   ..+...++++++++++ +.+.++++++|++|+. 
T Consensus        53 ~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~---~~~~~~---~~~~~~~l~~~la~~~~~~~~v~~~~sGsea~~~  126 (434)
T 3l44_A           53 DGNKYIDYLAAYGPIITGHAHPHITKAITTAAEN---GVLYGT---PTALEVKFAKMLKEAMPALDKVRFVNSGTEAVMT  126 (434)
T ss_dssp             TCCEEEECCGGGTTCSSCBTCHHHHHHHHHHHHH---CSCCSS---CCHHHHHHHHHHHHHCTTCSEEEEESSHHHHHHH
T ss_pred             CCCEEEECCCchhccccCCCCHHHHHHHHHHHHh---CcCCCC---CCHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHH
Confidence            346789997432  56888665555543322111   111112   2356888999999988 4556888888899986 


Q ss_pred             HHHHhcC--CCCEEEEcCCCCCChHHHHHhhcCCCCe-------------------EEEeecCCCHHHHHhhcC---CCc
Q 024619           85 AVTHLLG--TGEEIVAGDDLYGGTDRLLSRVTPKTGV-------------------VVKRVNTCDLDEVASAIG---PWT  140 (265)
Q Consensus        85 ~~~~~~~--~g~~viv~~~~~~~~~~~~~~~~~~~g~-------------------~~~~~~~~d~~~l~~~~~---~~~  140 (265)
                      ++..+..  ++++|++.+|+|+.+...   .....|.                   ++..++..|++++++++.   +++
T Consensus       127 ai~~a~~~~~~~~vi~~~~~yhg~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~  203 (434)
T 3l44_A          127 TIRVARAYTGRTKIMKFAGCYHGHSDL---VLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWGHEV  203 (434)
T ss_dssp             HHHHHHHHHCCCEEEEETTCCCCSSGG---GGBC-------CCCBSSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGE
T ss_pred             HHHHHHHhhCCCEEEEEcCccCCCcHH---HHhhcCCcccccCCCCcCCCCCcCCCceEecCcccHHHHHHHHHhCCCCE
Confidence            5544433  678999999999876421   1111111                   345566668999998886   467


Q ss_pred             eEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCCCCcC-----CCCCCccEEEeccccccccCCCceee
Q 024619          141 KLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPVLSR-----PLELGADIVMHSATKFIAGHSDVMAG  211 (265)
Q Consensus       141 ~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~~~~~~~-----~~~~~~di~~~s~sK~~~g~~g~~~G  211 (265)
                      ++|++++++|++|.+.+    +++|.++|++||+++|+||+|.....+.     ......|++  |+||.++  +|++.|
T Consensus       204 ~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~~~g~~~~~~~~~~~~di~--t~sK~~~--~G~~iG  279 (434)
T 3l44_A          204 AAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFMYGGAQDLLGVTPDLT--ALGKVIG--GGLPIG  279 (434)
T ss_dssp             EEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTSSSSCHHHHHTCCCSEE--EEEGGGG--TTSSCE
T ss_pred             EEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccceeccccHHHHHcCCCCCee--ehhhhhc--CCcCee
Confidence            88888888888888876    9999999999999999999997321111     112235654  6899995  468999


Q ss_pred             EEEeechhH
Q 024619          212 VLAVKGERL  220 (265)
Q Consensus       212 ~v~~~~~~~  220 (265)
                      +++++++.+
T Consensus       280 ~~~~~~~i~  288 (434)
T 3l44_A          280 AYGGKKEIM  288 (434)
T ss_dssp             EEEECHHHH
T ss_pred             eEEEcHHHH
Confidence            998776543

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=99.78  E-value=5.8e-19  Score=156.10  Aligned_cols=201  Identities=14%  Similarity=0.183  Sum_probs=134.1

Q ss_pred             ceeEeeccCCC--CCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhC-CCceEEecchHHHHH-H
Q 024619           10 STLLMNFSNEF--DPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK-ADRALCFTSGMAALA-A   85 (265)
Q Consensus        10 ~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g-~~~~i~~~~g~~al~-~   85 (265)
                      +.++++|+++.  ..+|..+|.+..+..-....   ...+.|   ..+.+.+++++++++++ .+.++++++|++|+. +
T Consensus        51 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~---~~~~~~---~~~~~~~la~~l~~~~~~~~~v~~~~ggsea~~~a  124 (427)
T 3fq8_A           51 GNRYIDYVGTWGPAICGHAHPEVIEALKVAMEK---GTSFGA---PCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAV  124 (427)
T ss_dssp             SCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTT---CSCCSS---CCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHH
T ss_pred             CCEEEECCCchhhhccCCCCHHHHHHHHHHHHh---CCCcCC---CCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHH
Confidence            46789997432  56888666555554322221   112222   34679999999999985 456777788889986 4


Q ss_pred             HHH--hcCCCCEEEEcCCCCCChHHHHHhh----------cCCCCe------EEEeecCCCHHHHHhhcCC---CceEEE
Q 024619           86 VTH--LLGTGEEIVAGDDLYGGTDRLLSRV----------TPKTGV------VVKRVNTCDLDEVASAIGP---WTKLVW  144 (265)
Q Consensus        86 ~~~--~~~~g~~viv~~~~~~~~~~~~~~~----------~~~~g~------~~~~~~~~d~~~l~~~~~~---~~~~i~  144 (265)
                      +..  ....++.|++.+++|+++.......          ....+.      .+..++..|++++++++.+   ++++|+
T Consensus       125 l~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi  204 (427)
T 3fq8_A          125 LRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVI  204 (427)
T ss_dssp             HHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETTCHHHHHHHHHHSTTTEEEEE
T ss_pred             HHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEE
Confidence            422  2234578999899998753111000          001111      2455666689999988864   688999


Q ss_pred             EecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCCCCc-----CCCCCCccEEEeccccccccCCCceeeEEEe
Q 024619          145 VESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVLAV  215 (265)
Q Consensus       145 ~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~  215 (265)
                      +++++|++|.+.+    +++|.++|++||+++|+||+|+....+     .......|+  .|+||.++  +|+++|++++
T Consensus       205 ~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~~~~~~~~~~~~di--~t~sK~~~--~G~~~G~~~~  280 (427)
T 3fq8_A          205 LEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIAYGGVQEKFGVTPDL--TTLGKIIG--GGLPVGAYGG  280 (427)
T ss_dssp             ECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBTTHHHHHTTCCCSE--EEECGGGG--TTSSCEEEEE
T ss_pred             EcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCcchhhHhcCCCCCh--hhhhhhhh--CCcceEEEEE
Confidence            9999999999988    999999999999999999999722111     111223565  47789995  4789999988


Q ss_pred             echhH
Q 024619          216 KGERL  220 (265)
Q Consensus       216 ~~~~~  220 (265)
                      +++.+
T Consensus       281 ~~~~~  285 (427)
T 3fq8_A          281 KREIM  285 (427)
T ss_dssp             CHHHH
T ss_pred             cHHHH
Confidence            66543

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=99.78  E-value=1.4e-18  Score=155.18  Aligned_cols=231  Identities=14%  Similarity=0.058  Sum_probs=147.4

Q ss_pred             ceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCC--CChhHHHHHHHHHhHhC--CCceEEecchHHHH
Q 024619           10 STLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRS--GNPTRDALESLLAKLDK--ADRALCFTSGMAAL   83 (265)
Q Consensus        10 ~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~--g~~~~~~l~~~l~~~~g--~~~~i~~~~g~~al   83 (265)
                      +.++++|+++  ...+|..+|.+..+..-+...    ..+.|+..  ..+.+.+++++++++++  .+.++++++|++|+
T Consensus        49 g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~----~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~ggseA~  124 (459)
T 4a6r_A           49 GNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEE----LPFYNTFFKTTHPAVVELSSLLAEVTPAGFDRVFYTNSGSESV  124 (459)
T ss_dssp             CCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHH----CSCCCTTSSSCCHHHHHHHHHHHHHSCTTCCEEEEESSHHHHH
T ss_pred             CCEEEECCCchhcccCCCCCHHHHHHHHHHHHh----ccccccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHH
Confidence            4678999843  577888766666554322211    12223332  34679999999999985  45677778888998


Q ss_pred             H-HHHHhcC--------CCCEEEEcCCCCCChHHHHHhhcC-----------CCCeEEEeecC----C---C--------
Q 024619           84 A-AVTHLLG--------TGEEIVAGDDLYGGTDRLLSRVTP-----------KTGVVVKRVNT----C---D--------  128 (265)
Q Consensus        84 ~-~~~~~~~--------~g~~viv~~~~~~~~~~~~~~~~~-----------~~g~~~~~~~~----~---d--------  128 (265)
                      . ++..+.+        +++.|++.+|+|+++.........           ..+...+.++.    .   |        
T Consensus       125 ~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~~~  204 (459)
T 4a6r_A          125 DTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVA  204 (459)
T ss_dssp             HHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcccCHHHHHHHH
Confidence            6 5555554        578999999999987644322211           11334443332    1   2        


Q ss_pred             HHHHHhhcC----CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcCC-----CCCCccEE
Q 024619          129 LDEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSRP-----LELGADIV  194 (265)
Q Consensus       129 ~~~l~~~~~----~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~~-----~~~~~di~  194 (265)
                      ++++++.+.    +++++|+++++++++|.+.+    +++|.++|++||+++|+||+|. .+..+..     .....|++
T Consensus       205 ~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~pdi~  284 (459)
T 4a6r_A          205 ARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPDLF  284 (459)
T ss_dssp             HHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE
T ss_pred             HHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCee
Confidence            677887775    45778888888888888766    9999999999999999999987 3332211     12345666


Q ss_pred             EeccccccccCCCceeeEEEeechhHHHHHH---HHHHhccCCCChhHHHHHHhccC
Q 024619          195 MHSATKFIAGHSDVMAGVLAVKGERLAKELY---FLQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       195 ~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                        ++||.+ +.++++.|+++++++.+ +.+.   ..........++..++..+..|+
T Consensus       285 --t~sK~l-~gg~~~lg~v~~~~~i~-~~~~~~~~~~~~~t~~~~~~~~aaa~aal~  337 (459)
T 4a6r_A          285 --TAAKGL-SSGYLPIGAVFVGKRVA-EGLIAGGDFNHGFTYSGHPVCAAVAHANVA  337 (459)
T ss_dssp             --EECGGG-GTTSSCCEEEEECHHHH-HHHHHHCTTHHHHHHCSCHHHHHHHHHHHH
T ss_pred             --ehhhhh-cCCCCCccceeeCHHHH-HHhhcCCCcccCCCCCCCHHHHHHHHHHHH
Confidence              578998 44557899998876543 4333   22222334455555555444443

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=99.78  E-value=2.3e-18  Score=154.46  Aligned_cols=154  Identities=19%  Similarity=0.181  Sum_probs=103.5

Q ss_pred             HHHHHHHhHhCCCc----eE-EecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHH----hhcCCCCeE--EEeec-
Q 024619           59 ALESLLAKLDKADR----AL-CFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLS----RVTPKTGVV--VKRVN-  125 (265)
Q Consensus        59 ~l~~~l~~~~g~~~----~i-~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~----~~~~~~g~~--~~~~~-  125 (265)
                      ..++++++++|.+.    .. +++||++|+. ++.++++|||+|++.++.|.++.....    ..+...|..  ++.++ 
T Consensus       104 ~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~v  183 (490)
T 2a7v_A          104 LCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKL  183 (490)
T ss_dssp             HHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCCSCEECCC-------------------------------CCB
T ss_pred             HHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHHHcCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEeccc
Confidence            34499999999985    33 4458898885 788899999999999998876432110    012233433  33333 


Q ss_pred             -----CCCHHHHHhhcC-CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCC-----cCCCCCCccEE
Q 024619          126 -----TCDLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL-----SRPLELGADIV  194 (265)
Q Consensus       126 -----~~d~~~l~~~~~-~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~-----~~~~~~~~di~  194 (265)
                           ..|++++++++. .++++|+++.++||  ...|+++|.++|+++|+++++|++|..|..     ..+.. +.|++
T Consensus       184 d~~~~~iD~d~le~~l~~~~~klIi~~~s~~~--~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~-~aDiv  260 (490)
T 2a7v_A          184 NPKTGLIDYNQLALTARLFRPRLIIAGTSAYA--RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK-HADIV  260 (490)
T ss_dssp             CTTTCSBCHHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG-TCSEE
T ss_pred             ccccCCcCHHHHHHHHhhcCCcEEEEcCCCCC--CcccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC-CCCEE
Confidence                 238999999885 47889998888886  467999999999999999999999875432     33433 68999


Q ss_pred             EeccccccccCCCceeeEEEeech
Q 024619          195 MHSATKFIAGHSDVMAGVLAVKGE  218 (265)
Q Consensus       195 ~~s~sK~~~g~~g~~~G~v~~~~~  218 (265)
                      ++|+||+++||.   +|++++++.
T Consensus       261 ~~S~hK~l~Gp~---GG~i~~~~~  281 (490)
T 2a7v_A          261 TTTTHKTLRGAR---SGLIFYRKG  281 (490)
T ss_dssp             EEESSGGGCSCS---CEEEEEECS
T ss_pred             EECCcccCcccc---chheeeccc
Confidence            999999997765   599988874

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=99.77  E-value=1e-18  Score=157.12  Aligned_cols=156  Identities=19%  Similarity=0.154  Sum_probs=121.3

Q ss_pred             HHHHHHHHHhHhCCCc-----eEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHh----hcCCCC--eEEEee
Q 024619           57 RDALESLLAKLDKADR-----ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSR----VTPKTG--VVVKRV  124 (265)
Q Consensus        57 ~~~l~~~l~~~~g~~~-----~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~----~~~~~g--~~~~~~  124 (265)
                      .+.+++++++++|.+.     .+++++|++++. ++.++++|||+|+++++.|+++...+..    .++..|  .+++.+
T Consensus        92 e~~~~~~~a~~~g~~~~~~~~~V~~~sGs~an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~  171 (483)
T 1rv3_A           92 ETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAY  171 (483)
T ss_dssp             HHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEE
T ss_pred             HHHHHHHHHHHhCCCcccCceEEEECCcHHHHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEEC
Confidence            4566699999999872     388999997775 5888899999999999999887532210    112223  455555


Q ss_pred             cC------CCHHHHHhhcC-CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-----CCCCCCcc
Q 024619          125 NT------CDLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLELGAD  192 (265)
Q Consensus       125 ~~------~d~~~l~~~~~-~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~~~~~~d  192 (265)
                      ++      .|++++++++. +++++|++ +++|++ .+.|+++|.++|+++|+++++|++|+.|...     .+.. +.|
T Consensus       172 ~~~~~~~~iD~d~le~~i~~~~tklIi~-~~sn~~-~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~-~~d  248 (483)
T 1rv3_A          172 KVNPDTGYIDYDRLEENARLFHPKLIIA-GTSCYS-RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE-HCH  248 (483)
T ss_dssp             CBCTTTCSBCHHHHHHHHHHHCCSEEEE-CCSSCC-SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG-TCS
T ss_pred             ccccCCCcCCHHHHHHHHhhcCCcEEEE-eCCcCC-CcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC-CCc
Confidence            32      38999999998 78999999 888988 8899999999999999999999999865432     2222 589


Q ss_pred             EEEeccccccccCCCceeeEEEeech
Q 024619          193 IVMHSATKFIAGHSDVMAGVLAVKGE  218 (265)
Q Consensus       193 i~~~s~sK~~~g~~g~~~G~v~~~~~  218 (265)
                      ++++|+||++.||.   +|+++++++
T Consensus       249 iv~~s~~K~l~Gpr---gG~i~~~~~  271 (483)
T 1rv3_A          249 VVTTTTHKTLRGCR---AGMIFYRRG  271 (483)
T ss_dssp             EEEEESSGGGCCCS---CEEEEEECS
T ss_pred             EEEecCcccCCCCC---ceEEEEcch
Confidence            99999999997664   599998875

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=99.77  E-value=1.7e-18  Score=154.76  Aligned_cols=205  Identities=12%  Similarity=0.050  Sum_probs=136.3

Q ss_pred             cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCC-C-ChhHHHHHHHHHhHhCC--CceEEecchHHH
Q 024619            9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRS-G-NPTRDALESLLAKLDKA--DRALCFTSGMAA   82 (265)
Q Consensus         9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g-~~~~~~l~~~l~~~~g~--~~~i~~~~g~~a   82 (265)
                      .+.++++|+++  ..++|..+|.+..+..-+...    ..+.|+.. + .+.+.+++++++++++.  +.++++++|++|
T Consensus        49 ~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~----~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gGseA  124 (460)
T 3gju_A           49 NGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKN----LAYYHAYVGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDA  124 (460)
T ss_dssp             TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHH----HSCCCCCTTCCCHHHHHHHHHHHHHSCTTEEEEEEESSHHHH
T ss_pred             CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHh----ccccccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHH
Confidence            34678999833  367888766666554322211    12233333 2 35699999999998744  467788888899


Q ss_pred             HH-HHHHhc--------CCCCEEEEcCCCCCChHHHHHhhcC-----------CCCeEEEeecC----CC----------
Q 024619           83 LA-AVTHLL--------GTGEEIVAGDDLYGGTDRLLSRVTP-----------KTGVVVKRVNT----CD----------  128 (265)
Q Consensus        83 l~-~~~~~~--------~~g~~viv~~~~~~~~~~~~~~~~~-----------~~g~~~~~~~~----~d----------  128 (265)
                      +. ++..+.        .+++.|++.+++|+++.........           ..+...+.++.    ++          
T Consensus       125 ~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~  204 (460)
T 3gju_A          125 NETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQ  204 (460)
T ss_dssp             HHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHH
Confidence            86 555554        2468999999999887644322211           11334443332    22          


Q ss_pred             --HHHHHhhcC----CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcCC-----CCCCcc
Q 024619          129 --LDEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSRP-----LELGAD  192 (265)
Q Consensus       129 --~~~l~~~~~----~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~~-----~~~~~d  192 (265)
                        ++++++++.    +++++|++++++|++|.+.+    +++|.++|++||+++|+||+|. .+..+..     .....|
T Consensus       205 ~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pd  284 (460)
T 3gju_A          205 HCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPD  284 (460)
T ss_dssp             HHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCS
T ss_pred             HHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCC
Confidence              578888775    56788999998898888755    9999999999999999999997 3333211     122456


Q ss_pred             EEEeccccccccCCCceeeEEEeechhH
Q 024619          193 IVMHSATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       193 i~~~s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                      ++  ++||.+++ ++++.|+++++++.+
T Consensus       285 i~--t~sK~l~g-G~~~lg~v~~~~~i~  309 (460)
T 3gju_A          285 LI--TIAKGLTS-AYAPLSGVIVADRVW  309 (460)
T ss_dssp             EE--EECGGGTT-TSSCCEEEEEEHHHH
T ss_pred             ee--eeehhhcC-CCCCeEEEEECHHHH
Confidence            65  57899854 336889998877544

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=99.77  E-value=6e-18  Score=151.15  Aligned_cols=168  Identities=18%  Similarity=0.186  Sum_probs=121.7

Q ss_pred             ccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHhcC----CCCE---EEEcCCCCCChHHHHHhhcCCCCe
Q 024619           48 DYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLG----TGEE---IVAGDDLYGGTDRLLSRVTPKTGV  119 (265)
Q Consensus        48 ~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~~~----~g~~---viv~~~~~~~~~~~~~~~~~~~g~  119 (265)
                      .|+..  +...++++.++++++.++++++++|++|+. ++..+.+    +||+   |+++.+.|..+..    .+...|.
T Consensus        71 ~y~~~--~~~~~l~~~la~~~~~~~v~~t~ggt~A~~~al~~~~~~~~~~Gd~~~~viv~~~~~~~~~~----~~~~~g~  144 (467)
T 1ax4_A           71 AYAGS--RNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAA----HVELNGC  144 (467)
T ss_dssp             CSSSC--HHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHH----HHHHTTC
T ss_pred             ccccC--ccHHHHHHHHHHHcCCCcEEEcCCcHHHHHHHHHHHHHhhccCCCccceEEEeccccchhhH----HHhccCC
Confidence            45443  567889999999999988888888999986 6677777    9998   9988555555442    3344566


Q ss_pred             EEEeecC---------------CCHHHHHhhcCC----CceEEEEecCCCCc-cccc---cHHHHHHHHHHcCCEEEEeC
Q 024619          120 VVKRVNT---------------CDLDEVASAIGP----WTKLVWVESPTNPR-QQIC---DIRKIAEMAHAHGALLLVDN  176 (265)
Q Consensus       120 ~~~~~~~---------------~d~~~l~~~~~~----~~~~i~~~~~~np~-G~~~---~l~~i~~~a~~~~~~li~D~  176 (265)
                      +++.++.               .|++++++++.+    ++++|++++++||+ |.+.   ++++|.++|++||+++|+|+
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De  224 (467)
T 1ax4_A          145 KAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDS  224 (467)
T ss_dssp             EEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred             ceecccccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEc
Confidence            7665421               278999998863    68999999999999 7775   47899999999999999999


Q ss_pred             CcCC-----------CCCcCC-CC------CCccEEEeccccccccCCCceeeEEEeech-hHHHHH
Q 024619          177 SIMS-----------PVLSRP-LE------LGADIVMHSATKFIAGHSDVMAGVLAVKGE-RLAKEL  224 (265)
Q Consensus       177 ~~~~-----------~~~~~~-~~------~~~di~~~s~sK~~~g~~g~~~G~v~~~~~-~~~~~~  224 (265)
                      ++..           +..+.. ..      ...|+++.|+||+++. +  .+|+++.+++ .+.+.+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~g~-~--~Gg~~~~~d~~~l~~~~  288 (467)
T 1ax4_A          225 ARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLL-N--IGGLVAIRDNEEIFTLA  288 (467)
T ss_dssp             TTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCC-S--SCEEEEESSCHHHHHHH
T ss_pred             hhhhhcchhccccccccCCCchhhhhhhhccccceEEEeccccCCC-C--cceEEEeCCHHHHHHHH
Confidence            8654           222211 11      2368889999999854 3  2478877734 444433

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=99.77  E-value=1.4e-18  Score=157.39  Aligned_cols=156  Identities=20%  Similarity=0.167  Sum_probs=123.4

Q ss_pred             HHHHHHHHHhHhCCC--ceEEecchHHHHH-HHHHhc-------C-CCC------EEEEcCCCCCChHHHHHhhcCCCCe
Q 024619           57 RDALESLLAKLDKAD--RALCFTSGMAALA-AVTHLL-------G-TGE------EIVAGDDLYGGTDRLLSRVTPKTGV  119 (265)
Q Consensus        57 ~~~l~~~l~~~~g~~--~~i~~~~g~~al~-~~~~~~-------~-~g~------~viv~~~~~~~~~~~~~~~~~~~g~  119 (265)
                      .+++++++++++|.+  +.+++++|++|+. ++..+.       + +|+      .|+++++.|+++...+    +..|.
T Consensus       150 e~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~----~~~g~  225 (515)
T 2jis_A          150 EEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGA----AFLGL  225 (515)
T ss_dssp             HHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHH----HHTTS
T ss_pred             HHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHH----HHcCC
Confidence            677888999999986  4667777788864 444432       2 465      7889999999887554    33344


Q ss_pred             ---EEEeecCC-----CHHHHHhhcCC------CceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcC
Q 024619          120 ---VVKRVNTC-----DLDEVASAIGP------WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR  185 (265)
Q Consensus       120 ---~~~~~~~~-----d~~~l~~~~~~------~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~  185 (265)
                         +++.++.+     |++++++++.+      ++++|++++++|++|.+.|+++|.++|+++|+++++|++|+.+....
T Consensus       226 g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~~~~~~  305 (515)
T 2jis_A          226 GTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLS  305 (515)
T ss_dssp             CGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGC
T ss_pred             CCCcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhhHHHhC
Confidence               77777764     79999998864      48899999999999999999999999999999999999998777643


Q ss_pred             C-----C-C-CCccEEEeccccccccCCCceeeEEEeech
Q 024619          186 P-----L-E-LGADIVMHSATKFIAGHSDVMAGVLAVKGE  218 (265)
Q Consensus       186 ~-----~-~-~~~di~~~s~sK~~~g~~g~~~G~v~~~~~  218 (265)
                      +     . . .++|++++|+|||+++|.|  +|+++++++
T Consensus       306 ~~~~~~~~g~~~aD~v~~s~hK~l~~p~g--~G~l~~~~~  343 (515)
T 2jis_A          306 QTHRHLLDGIQRADSVAWNPHKLLAAGLQ--CSALLLQDT  343 (515)
T ss_dssp             TTTGGGGTTGGGCSEEEECTTSTTCCCSC--CEEEEESCC
T ss_pred             hhhHhhcCCCccCCEEEECcccccCCCCC--eeEEEEeCh
Confidence            2     1 2 2689999999999987766  588888876

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=99.77  E-value=1e-18  Score=155.71  Aligned_cols=203  Identities=15%  Similarity=0.080  Sum_probs=126.4

Q ss_pred             cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CC-hhHHHHHHHHHhHhC--CCceEEecchHHH
Q 024619            9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GN-PTRDALESLLAKLDK--ADRALCFTSGMAA   82 (265)
Q Consensus         9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~-~~~~~l~~~l~~~~g--~~~~i~~~~g~~a   82 (265)
                      .+.++++|.++  ..++|..+|.+.++..-....    .. .|... +. +.+.+++++++++++  .+.+++++||++|
T Consensus        42 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~----~~-~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA  116 (448)
T 3dod_A           42 NGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGK----IA-HSTLLGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEA  116 (448)
T ss_dssp             TSCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTT----CS-CCCCSSSEEHHHHHHHHHHHHHSCTTEEEEEEESSHHHH
T ss_pred             CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHh----cc-CccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHH
Confidence            34678999742  677998766665554422221    11 12222 22 568999999999984  4568888888999


Q ss_pred             HH-HHHHhcC----C----CCEEEEcCCCCCChHHHHHhhcCCC---------CeEEEeecCCC----------------
Q 024619           83 LA-AVTHLLG----T----GEEIVAGDDLYGGTDRLLSRVTPKT---------GVVVKRVNTCD----------------  128 (265)
Q Consensus        83 l~-~~~~~~~----~----g~~viv~~~~~~~~~~~~~~~~~~~---------g~~~~~~~~~d----------------  128 (265)
                      +. ++..+.+    +    +|+|++.+|+|+++...........         ...+..++.++                
T Consensus       117 ~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  196 (448)
T 3dod_A          117 MEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQC  196 (448)
T ss_dssp             HHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECCCCCTTSSSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCCccccCCccchhhhhHHH
Confidence            86 5555543    4    4999999999987753221110000         01223333332                


Q ss_pred             HHHHHhhcC---CCceEEEEecCC-CCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CCCCCccEE
Q 024619          129 LDEVASAIG---PWTKLVWVESPT-NPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIV  194 (265)
Q Consensus       129 ~~~l~~~~~---~~~~~i~~~~~~-np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~~~~~di~  194 (265)
                      ++++++++.   +++++|++++++ |++|.+.+    +++|.++|++||+++|+||+|. .+..+.     ......|++
T Consensus       197 ~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di~  276 (448)
T 3dod_A          197 LRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLM  276 (448)
T ss_dssp             HHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE
T ss_pred             HHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccchhhhhhcCCCCCEE
Confidence            788888875   567889999888 99997765    9999999999999999999987 332221     112235655


Q ss_pred             EeccccccccCCC-ceeeEEEeechhH
Q 024619          195 MHSATKFIAGHSD-VMAGVLAVKGERL  220 (265)
Q Consensus       195 ~~s~sK~~~g~~g-~~~G~v~~~~~~~  220 (265)
                        +++|.+++  | +++|+++.+++.+
T Consensus       277 --t~sK~l~~--G~~~ig~v~~~~~~~  299 (448)
T 3dod_A          277 --AAGKGITG--GYLPIAVTFATEDIY  299 (448)
T ss_dssp             --EECGGGGT--TSSCCEEEEEEHHHH
T ss_pred             --EecccccC--CcCceEEEEECHHHH
Confidence              67899953  6 5899998877543

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=99.77  E-value=5.7e-18  Score=152.97  Aligned_cols=157  Identities=13%  Similarity=0.073  Sum_probs=125.5

Q ss_pred             HHHHHHHHHhHhCCC-------ceEEecchHHHHH-HHHHhcCC--------CC-----EEEEcCCCCCChHHHHHhhcC
Q 024619           57 RDALESLLAKLDKAD-------RALCFTSGMAALA-AVTHLLGT--------GE-----EIVAGDDLYGGTDRLLSRVTP  115 (265)
Q Consensus        57 ~~~l~~~l~~~~g~~-------~~i~~~~g~~al~-~~~~~~~~--------g~-----~viv~~~~~~~~~~~~~~~~~  115 (265)
                      .+++++++++++|.+       ..+++++|++++. +++++..+        |+     .|+++.+.|.++.    ..++
T Consensus        97 e~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~----~~~~  172 (502)
T 3hbx_A           97 QNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWE----KFAR  172 (502)
T ss_dssp             HHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHH----HHHH
T ss_pred             HHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHH----HHHH
Confidence            557788899999987       2345777788875 55555444        76     8999999998876    5556


Q ss_pred             CCCeEEEeecCC------CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHc------CCEEEEeCCcCCCCC
Q 024619          116 KTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH------GALLLVDNSIMSPVL  183 (265)
Q Consensus       116 ~~g~~~~~~~~~------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~------~~~li~D~~~~~~~~  183 (265)
                      ..|++++.++.+      |++++++++.+++++|++++++||||.+.|+++|.++|+++      |+++++|++|+.+..
T Consensus       173 ~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~  252 (502)
T 3hbx_A          173 YFEVELKEVKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIA  252 (502)
T ss_dssp             HTTCEEEEECCBTTBCSCCHHHHHHHCCTTEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTH
T ss_pred             HcCceeEEEecCCCcCcCCHHHHHHHHhhCCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhh
Confidence            678899888753      79999999999999999999999999999999999999999      999999999985431


Q ss_pred             ----c----CCCCCCccEEEeccccccccCCCceeeEEEeechh
Q 024619          184 ----S----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER  219 (265)
Q Consensus       184 ----~----~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~  219 (265)
                          .    .....+.|++..|++||+.+|.|  +|+++.++..
T Consensus       253 p~~~~~~~~~~~~~~~D~v~~s~hK~l~~p~g--~G~~~~~~~~  294 (502)
T 3hbx_A          253 PFLYPELEWDFRLPLVKSINVSGHKYGLVYAG--IGWVIWRNKE  294 (502)
T ss_dssp             HHHCTTCCCSTTSTTEEEEEEETTTTTCCCSS--CEEEEESSGG
T ss_pred             hhhCcccccccCCCCceEEEECcccccCCCCC--eEEEEEeCHH
Confidence                1    11123789999999999988877  4777776544

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=99.76  E-value=2.6e-18  Score=155.26  Aligned_cols=160  Identities=13%  Similarity=0.056  Sum_probs=122.9

Q ss_pred             HHHHHHHHHhHhCCC----ceEEecchHHHHH-HHHHhc--------CCC-----C-EEEEcCCCCCChHHHHHhhcCCC
Q 024619           57 RDALESLLAKLDKAD----RALCFTSGMAALA-AVTHLL--------GTG-----E-EIVAGDDLYGGTDRLLSRVTPKT  117 (265)
Q Consensus        57 ~~~l~~~l~~~~g~~----~~i~~~~g~~al~-~~~~~~--------~~g-----~-~viv~~~~~~~~~~~~~~~~~~~  117 (265)
                      .+++.+++++++|.+    ..+++++|++|+. ++..+.        ++|     + .|+++.+.|+++...+. ... .
T Consensus       134 e~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~-~~g-~  211 (504)
T 2okj_A          134 EQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGA-ALG-F  211 (504)
T ss_dssp             HHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHH-HTT-S
T ss_pred             HHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHH-HcC-C
Confidence            556668889999875    4666667778875 454443        246     6 78899999999875552 222 1


Q ss_pred             Ce-EEEeecCC-----CHHHHHhhcCC------CceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcC
Q 024619          118 GV-VVKRVNTC-----DLDEVASAIGP------WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR  185 (265)
Q Consensus       118 g~-~~~~~~~~-----d~~~l~~~~~~------~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~  185 (265)
                      |. +++.++.+     |++++++++.+      ++++|++++++|++|.+.|+++|.++|+++|+++++|++|+.+.+..
T Consensus       212 g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a~~~~~~~~  291 (504)
T 2okj_A          212 GTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMS  291 (504)
T ss_dssp             CGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGC
T ss_pred             CcccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEehhhhhHHHhC
Confidence            33 77777765     89999998864      58899999999999999999999999999999999999998776531


Q ss_pred             -----CCC--CCccEEEeccccccccCCCceeeEEEeechhH
Q 024619          186 -----PLE--LGADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       186 -----~~~--~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                           ...  .+.|+++.|+|||+++|.+  +|+++.+++.+
T Consensus       292 ~~~~~~~~g~~~~D~i~~~~hK~~~~p~~--~g~l~~~~~~~  331 (504)
T 2okj_A          292 RKHRHKLNGIERANSVTWNPHKMMGVLLQ--CSAILVKEKGI  331 (504)
T ss_dssp             TTTGGGGTTGGGCSEEEECTTSTTCCCSC--CEEEEESSTTH
T ss_pred             HhhHhhcCCcccCCEEEECchhhcCCCcc--eEEEEEECHHH
Confidence                 111  2689999999999977765  69998887543

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=99.76  E-value=4.4e-18  Score=150.68  Aligned_cols=202  Identities=15%  Similarity=0.092  Sum_probs=130.5

Q ss_pred             ceeEeeccCCC--CCCCCCCCCeeeccccccCCCCCCCCCccCCC-CChhHHHHHHHHHhHhCC--CceEEecchHHHHH
Q 024619           10 STLLMNFSNEF--DPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLDKA--DRALCFTSGMAALA   84 (265)
Q Consensus        10 ~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~g~--~~~i~~~~g~~al~   84 (265)
                      +..+++|.+..  .++|..+|.+..+..-....    ..+ +... ..+...++++.++++++.  +.++++++|++|+.
T Consensus        42 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~----~~~-~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~  116 (433)
T 1zod_A           42 GRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGK----LDH-LFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNE  116 (433)
T ss_dssp             CCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHH----CCC-CCTTCCCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHH
T ss_pred             CCEEEEcccchhccccCCCCHHHHHHHHHHHHh----Ccc-cccccCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHH
Confidence            35678885222  36787555554443322111    111 1122 235688999999999974  45667777889986


Q ss_pred             -HHHHhc--CCCCEEEEcCCCCCChHHHHHhhc----------CCCCeEEEeecC------C---------CHHHHHhhc
Q 024619           85 -AVTHLL--GTGEEIVAGDDLYGGTDRLLSRVT----------PKTGVVVKRVNT------C---------DLDEVASAI  136 (265)
Q Consensus        85 -~~~~~~--~~g~~viv~~~~~~~~~~~~~~~~----------~~~g~~~~~~~~------~---------d~~~l~~~~  136 (265)
                       ++..+.  ..+++|++.+|.|++.........          ...|+..+.++.      .         |++++++.+
T Consensus       117 ~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l  196 (433)
T 1zod_A          117 AAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLI  196 (433)
T ss_dssp             HHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHH
Confidence             444332  345899999999987653321111          123566555432      1         388888887


Q ss_pred             C----CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcCC-----CCCCccEEEecccccc
Q 024619          137 G----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSRP-----LELGADIVMHSATKFI  202 (265)
Q Consensus       137 ~----~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~~-----~~~~~di~~~s~sK~~  202 (265)
                      .    +++++|++++.+||+|.+.+    +++|.++|++||+++|+||+|+ .+..+..     .....|++  |+||++
T Consensus       197 ~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~~~~~~~~~~di~--s~sK~~  274 (433)
T 1zod_A          197 DRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDIL--TLSKTL  274 (433)
T ss_dssp             HHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECHHH
T ss_pred             HhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHhHHhhcCCCCCEE--Eecccc
Confidence            6    46777777766788997755    9999999999999999999998 3332221     12235654  789999


Q ss_pred             ccCCCceeeEEEeechhH
Q 024619          203 AGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       203 ~g~~g~~~G~v~~~~~~~  220 (265)
                      + + |+++|+++++++.+
T Consensus       275 ~-~-G~~ig~~~~~~~~~  290 (433)
T 1zod_A          275 G-A-GLPLAAIVTSAAIE  290 (433)
T ss_dssp             H-T-TSSCEEEEECHHHH
T ss_pred             c-C-CCCeeEEEEhHHHH
Confidence            5 3 78999999877443

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=99.75  E-value=9.4e-18  Score=150.59  Aligned_cols=231  Identities=16%  Similarity=0.146  Sum_probs=148.1

Q ss_pred             cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccC-CCCChhHHHHHHHHHhHhC--CCceEEecchHHHH
Q 024619            9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYT-RSGNPTRDALESLLAKLDK--ADRALCFTSGMAAL   83 (265)
Q Consensus         9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~-~~g~~~~~~l~~~l~~~~g--~~~~i~~~~g~~al   83 (265)
                      .+.++|+|+++  ...+|..+|.+..+..-+...    ..+.++ ....+...+++++++++++  .+.+++++||++|+
T Consensus        52 ~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~----~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~  127 (476)
T 3i5t_A           52 DGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMV----LPYASPWYMATSPAARLAEKIATLTPGDLNRIFFTTGGSTAV  127 (476)
T ss_dssp             TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHH----CCCCCTTTCBCHHHHHHHHHHHTTSSTTCCEEEEESSHHHHH
T ss_pred             CCCEEEECCCchhhccCCCCCHHHHHHHHHHHHh----ccCcccCccCCHHHHHHHHHHHhcCCCCcCEEEEeCchHHHH
Confidence            34678999743  466898776666665422221    122222 1234679999999999984  55788888889998


Q ss_pred             H-HHHHhc--------CCCCEEEEcCCCCCChHHHHHhhcC-----------CCCeEEEeecC-----C-C--------H
Q 024619           84 A-AVTHLL--------GTGEEIVAGDDLYGGTDRLLSRVTP-----------KTGVVVKRVNT-----C-D--------L  129 (265)
Q Consensus        84 ~-~~~~~~--------~~g~~viv~~~~~~~~~~~~~~~~~-----------~~g~~~~~~~~-----~-d--------~  129 (265)
                      . ++..+.        ..++.|++.++.|+++.........           ..+...+..+.     + +        +
T Consensus       128 ~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  207 (476)
T 3i5t_A          128 DSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLV  207 (476)
T ss_dssp             HHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHH
Confidence            6 554443        3367899999999887643322111           12333433332     1 1        6


Q ss_pred             HHHHhhcC----CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcC------CCCCCccEE
Q 024619          130 DEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR------PLELGADIV  194 (265)
Q Consensus       130 ~~l~~~~~----~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~------~~~~~~di~  194 (265)
                      +++++.+.    +++++|++++++|++|.+.+    +++|.++|++||+++|+||+|. .+..+.      ......|++
T Consensus       208 ~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v~pdi~  287 (476)
T 3i5t_A          208 QEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDII  287 (476)
T ss_dssp             HHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCCCCSEE
T ss_pred             HHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccCceeeecccCCCcchh
Confidence            78887775    56789999999999997654    9999999999999999999997 333221      223346776


Q ss_pred             EeccccccccCCC-ceeeEEEeechhHHHHHHHH-------HHhccCCCChhHHHHHHhccC
Q 024619          195 MHSATKFIAGHSD-VMAGVLAVKGERLAKELYFL-------QNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       195 ~~s~sK~~~g~~g-~~~G~v~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~  248 (265)
                        +++|.+++  | ++.|+++++++.+ +.+...       ........++..++..+..|+
T Consensus       288 --t~sK~l~~--G~~plg~v~~~~~i~-~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~  344 (476)
T 3i5t_A          288 --TFAKGVTS--GYVPLGGLAISEAVL-ARISGENAKGSWFTNGYTYSNQPVACAAALANIE  344 (476)
T ss_dssp             --EECGGGGT--TSSCCEEEEECHHHH-HTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHH
T ss_pred             --hhhhhhcC--CCcCeEEEEECHHHH-HHHhcCCcccccccccCCCCcCHHHHHHHHHHHH
Confidence              56899954  6 7889998876433 322221       112334455666555554444

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=99.75  E-value=8.6e-19  Score=155.20  Aligned_cols=199  Identities=17%  Similarity=0.133  Sum_probs=133.9

Q ss_pred             cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHh-CCCceEEecchHHHHH-
Q 024619            9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD-KADRALCFTSGMAALA-   84 (265)
Q Consensus         9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~-g~~~~i~~~~g~~al~-   84 (265)
                      .+.++++|+++  ..++|..+|.+..+..-....   ...+.|   ..+...++++.+++++ +.+.++++++|++|+. 
T Consensus        51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~---~~~~~~---~~~~~~~l~~~la~~~~~~~~v~~~~~Gsea~~~  124 (429)
T 3k28_A           51 DGNEYIDYVLSWGPLIHGHANDRVVEALKAVAER---GTSFGA---PTEIENKLAKLVIERVPSIEIVRMVNSGTEATMS  124 (429)
T ss_dssp             TCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHHH---CSCCSS---CCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHH
T ss_pred             CCCEEEECCCChhhcccCCCCHHHHHHHHHHHhh---CcCcCC---CCHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHH
Confidence            34678999742  256887666665554322211   111111   2366888999999988 5667888888899986 


Q ss_pred             HHHHhc--CCCCEEEEcCCCCCChHHHHHhhcCCCC-------------e------EEEeecCCCHHHHHhhcC---CCc
Q 024619           85 AVTHLL--GTGEEIVAGDDLYGGTDRLLSRVTPKTG-------------V------VVKRVNTCDLDEVASAIG---PWT  140 (265)
Q Consensus        85 ~~~~~~--~~g~~viv~~~~~~~~~~~~~~~~~~~g-------------~------~~~~~~~~d~~~l~~~~~---~~~  140 (265)
                      ++..+.  .+++.|++.+++|+.+..   ......|             .      ++..++..|++++++++.   +++
T Consensus       125 ai~~a~~~~~~~~vi~~~~~yhg~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~  201 (429)
T 3k28_A          125 ALRLARGYTGRNKILKFIGCYHGHGD---SLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDI  201 (429)
T ss_dssp             HHHHHHHHHTCCEEEEEETCCCCSCG---GGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGE
T ss_pred             HHHHHHHhhCCCEEEEECCCcCCCcH---HHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCCCCE
Confidence            454443  357889999999986642   1111111             1      344555668999998886   467


Q ss_pred             eEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCCCCcC-----CCCCCccEEEeccccccccCCCceee
Q 024619          141 KLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPVLSR-----PLELGADIVMHSATKFIAGHSDVMAG  211 (265)
Q Consensus       141 ~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~~~~~~~-----~~~~~~di~~~s~sK~~~g~~g~~~G  211 (265)
                      ++|++++++|++|.+.+    +++|.++|++||+++|+||+|.....+.     ......|++  ++||.++ . |+++|
T Consensus       202 ~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~~~~~~~~~~~~di~--t~sK~~~-~-G~~iG  277 (429)
T 3k28_A          202 ACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGFRVAYNCGQGYYGVTPDLT--CLGKVIG-G-GLPVG  277 (429)
T ss_dssp             EEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTSSTTHHHHHHTCCCSEE--EECGGGG-T-TSCCE
T ss_pred             EEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccccccCcchHHHHhCCCCcee--hhhhhhc-C-CCCeE
Confidence            88888888888888877    9999999999999999999996321111     112235554  6899994 3 68999


Q ss_pred             EEEeechhH
Q 024619          212 VLAVKGERL  220 (265)
Q Consensus       212 ~v~~~~~~~  220 (265)
                      +++++++.+
T Consensus       278 ~~~~~~~~~  286 (429)
T 3k28_A          278 AYGGKAEIM  286 (429)
T ss_dssp             EEEECHHHH
T ss_pred             EEEEcHHHH
Confidence            998877543

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=99.75  E-value=3.2e-18  Score=153.91  Aligned_cols=158  Identities=16%  Similarity=0.108  Sum_probs=122.0

Q ss_pred             HHHHHHHHHhHhCCCc-----------eEEecchHHHHH-HHHHhcCC---------CC--------E--EEEcCCCCCC
Q 024619           57 RDALESLLAKLDKADR-----------ALCFTSGMAALA-AVTHLLGT---------GE--------E--IVAGDDLYGG  105 (265)
Q Consensus        57 ~~~l~~~l~~~~g~~~-----------~i~~~~g~~al~-~~~~~~~~---------g~--------~--viv~~~~~~~  105 (265)
                      .+++.+++++++|.+.           .+++++|++|+. ++..+.++         ||        .  |+++.+.|++
T Consensus       115 e~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s  194 (486)
T 1js3_A          115 ETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSS  194 (486)
T ss_dssp             HHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHH
T ss_pred             HHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCCcHH
Confidence            5577788899998763           577777888864 44443211         42        3  7789999988


Q ss_pred             hHHHHHhhcCCCCeEEEeecCC-----CHHHHHhhcCCCc------eEEEEecCCCCccccccHHHHHHHHHHcCCEEEE
Q 024619          106 TDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWT------KLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV  174 (265)
Q Consensus       106 ~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~~~~~~------~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~  174 (265)
                      +.    ..++..|++++.++.+     |++++++++.+++      .+|++++++|++|.+.|+++|+++|++||+++++
T Consensus       195 ~~----~~~~~~G~~v~~v~~d~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~lhv  270 (486)
T 1js3_A          195 VE----RAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHV  270 (486)
T ss_dssp             HH----HHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEE
T ss_pred             HH----HHHHhCCCceEEeecCCCCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEEEE
Confidence            76    4456678899999864     8999999997555      3888999999999999999999999999999999


Q ss_pred             eCCcCCCCCcCC-C------CCCccEEEeccccccccCCCceeeEEEeechhH
Q 024619          175 DNSIMSPVLSRP-L------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       175 D~~~~~~~~~~~-~------~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                      |++|+.+.+..+ .      ..+.|.+++++||++++|.+  +|+++.+++..
T Consensus       271 D~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~--~G~l~~~~~~~  321 (486)
T 1js3_A          271 DAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFD--CSAMWVKRRTD  321 (486)
T ss_dssp             ECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSS--CEEEEESCHHH
T ss_pred             ehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCcc--eEEEEEeCHHH
Confidence            999987654321 1      12579999999999977654  69998887643

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=99.75  E-value=1.4e-18  Score=156.70  Aligned_cols=203  Identities=15%  Similarity=0.114  Sum_probs=136.9

Q ss_pred             EeeccCCCCCCCCCCCCeeeccccccC--CCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCCC---ceEEecchHHHHH-
Q 024619           13 LMNFSNEFDPYGALSTPLYQTATFKQP--SATENGPYDYTRS-GNP-TRDALESLLAKLDKAD---RALCFTSGMAALA-   84 (265)
Q Consensus        13 ~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~~~g~~al~-   84 (265)
                      .++++ ++.|++..+.+..........  .........|... +.. ..+++.+++++++|.+   .++++++|++|+. 
T Consensus        95 ~~~~~-~~~yl~~~~~~~~~~~v~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~~  173 (497)
T 2qma_A           95 AIFTQ-HPDCIAHLHTPPLMPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQM  173 (497)
T ss_dssp             SCCTT-STTBCSSSCCCCBHHHHHHHHHHHHHCCCTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHHHH
T ss_pred             CCCCC-CCCeeEeCCCCCcHHHHHHHHHHHhhcccccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHHHH
Confidence            34666 788888777665444321110  0011112233333 112 2455677799999873   4666677778874 


Q ss_pred             HHHHh----c---------CC------CC-EEEEcCCCCCChHHHHHhhcCCCCe-EEEeecCC-----CHHHHHhhcCC
Q 024619           85 AVTHL----L---------GT------GE-EIVAGDDLYGGTDRLLSRVTPKTGV-VVKRVNTC-----DLDEVASAIGP  138 (265)
Q Consensus        85 ~~~~~----~---------~~------g~-~viv~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~-----d~~~l~~~~~~  138 (265)
                      ++..+    +         ++      |+ .|+++.+.|.++...+. ... .|. +++.++.+     |++++++++.+
T Consensus       174 al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~-~~g-~g~~~v~~v~~~~~~~~d~~~L~~~i~~  251 (497)
T 2qma_A          174 GLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSAS-WMG-LGEKAVMTVDANADGTMDITKLDEVIAQ  251 (497)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHH-HTT-SCGGGEEEECBCTTSSBCGGGHHHHHHH
T ss_pred             HHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHH-HcC-CCcccEEEEecCCCCcCCHHHHHHHHHH
Confidence            44432    2         12      46 78899999988875542 222 133 67777765     88999888864


Q ss_pred             C----c--eEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCC-----CC-CccEEEeccccccccCC
Q 024619          139 W----T--KLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPL-----EL-GADIVMHSATKFIAGHS  206 (265)
Q Consensus       139 ~----~--~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~-----~~-~~di~~~s~sK~~~g~~  206 (265)
                      +    +  .+|++++++|++|.+.|+++|.++|++||+++++|++|+.+......     .. +.|+++.|+|||+++|.
T Consensus       252 ~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~~~~~~~~~~~~~gi~~~D~i~~s~hK~l~~p~  331 (497)
T 2qma_A          252 AKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGALILSSHKSRLKGVERAHSISVDFHKLFYQTI  331 (497)
T ss_dssp             HHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGSTTGGGGTTGGGCSEEEEETTTTTCCCS
T ss_pred             HHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhhHHHHhCcchHhhcCcccCCEEEEcchhccCCCc
Confidence            2    3  38888999999999999999999999999999999999877654221     22 57999999999998875


Q ss_pred             CceeeEEEeechhH
Q 024619          207 DVMAGVLAVKGERL  220 (265)
Q Consensus       207 g~~~G~v~~~~~~~  220 (265)
                      +  +|+++.+++..
T Consensus       332 ~--~G~l~~~~~~~  343 (497)
T 2qma_A          332 S--CGALLVNDKSN  343 (497)
T ss_dssp             S--CEEEEESCGGG
T ss_pred             c--eEEEEEeCHHH
Confidence            5  68888876653

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=99.74  E-value=4.6e-18  Score=151.87  Aligned_cols=203  Identities=13%  Similarity=0.088  Sum_probs=135.2

Q ss_pred             eEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhC--CCceEEecchHHHHH-HH
Q 024619           12 LLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK--ADRALCFTSGMAALA-AV   86 (265)
Q Consensus        12 ~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g--~~~~i~~~~g~~al~-~~   86 (265)
                      ++|+|.++  ..++|..+|.+..+..-+...   .....+.....+...+++++++++++  .+.++++++|++|+. ++
T Consensus        76 ~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~---~~~~~~~~~~~~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Al  152 (457)
T 3tfu_A           76 EVLDAMSSWWTAIHGHGHPALDQALTTQLRV---MNHVMFGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAA  152 (457)
T ss_dssp             EEEETTHHHHTCTTCBTCHHHHHHHHHHHHH---CSCCCSSSEECHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHH
T ss_pred             EEEECCCcHhhhccCCCCHHHHHHHHHHHHh---ccCccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHH
Confidence            89999843  578998666665554322211   11111222234678899999999995  446788888889986 55


Q ss_pred             HHhcC-------CC-CEEEEcCCCCCChHHHHHhhcC------------CCCeEEEeecC-----CCHHHHHhhcC---C
Q 024619           87 THLLG-------TG-EEIVAGDDLYGGTDRLLSRVTP------------KTGVVVKRVNT-----CDLDEVASAIG---P  138 (265)
Q Consensus        87 ~~~~~-------~g-~~viv~~~~~~~~~~~~~~~~~------------~~g~~~~~~~~-----~d~~~l~~~~~---~  138 (265)
                      ..+.+       +| +.|++.+++|+++.........            ..+......+.     .|++++++++.   +
T Consensus       153 k~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~  232 (457)
T 3tfu_A          153 KMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAG  232 (457)
T ss_dssp             HHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCC
Confidence            54443       55 5889999999886533222211            01222222221     26788888886   6


Q ss_pred             CceEEEEec-CCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcCC-----CCCCccEEEeccccccccCCC
Q 024619          139 WTKLVWVES-PTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSRP-----LELGADIVMHSATKFIAGHSD  207 (265)
Q Consensus       139 ~~~~i~~~~-~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~~-----~~~~~di~~~s~sK~~~g~~g  207 (265)
                      ++++|++++ ++|++|.+.+    +++|.++|++||+++|+||+|. .+..+..     .....|++  |++|.++| +.
T Consensus       233 ~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~~~a~~~~~~~pdii--t~sK~l~g-G~  309 (457)
T 3tfu_A          233 ELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIM--CVGKALTG-GY  309 (457)
T ss_dssp             GEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGT-TS
T ss_pred             CEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccchhHhHhcCCCceEE--EEChhhhC-CC
Confidence            788999999 9999998865    8999999999999999999986 3322211     12346766  78998854 33


Q ss_pred             ceeeEEEeechhH
Q 024619          208 VMAGVLAVKGERL  220 (265)
Q Consensus       208 ~~~G~v~~~~~~~  220 (265)
                      +++|+++++++.+
T Consensus       310 ~~lG~v~~~~~i~  322 (457)
T 3tfu_A          310 LSLAATLCTADVA  322 (457)
T ss_dssp             SCCEEEEEEHHHH
T ss_pred             cceEEEEEcHHHH
Confidence            5789998877543

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=99.74  E-value=6.5e-18  Score=149.29  Aligned_cols=200  Identities=17%  Similarity=0.136  Sum_probs=131.1

Q ss_pred             ceeEeeccCCC--CCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHh-CCCceEEecchHHHHH-H
Q 024619           10 STLLMNFSNEF--DPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD-KADRALCFTSGMAALA-A   85 (265)
Q Consensus        10 ~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~-g~~~~i~~~~g~~al~-~   85 (265)
                      +.++++|++..  +++|..+|.+..+..-....   ...+.|   ..+...++++++++++ +.+.++++++|++|+. +
T Consensus        51 g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~---~~~~~~---~~~~~~~l~~~l~~~~~~~~~v~~~~~g~ea~~~a  124 (424)
T 2e7u_A           51 GNRYLDYVMSWGPLILGHAHPKVLARVRETLER---GLTFGA---PSPLEVALAKKVKRAYPFVDLVRFVNSGTEATMSA  124 (424)
T ss_dssp             CCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHT---CSCCSS---CCHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHH
T ss_pred             CCEEEEccccccccccCCCCHHHHHHHHHHHHh---CCCCCC---CCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHH
Confidence            45688997322  67888444444443222111   111211   2356899999999998 6667888888889986 4


Q ss_pred             HHH--hcCCCCEEEEcCCCCCChHHHHHhhc----------CCCCe------EEEeecCCCHHHHHhhcC---CCceEEE
Q 024619           86 VTH--LLGTGEEIVAGDDLYGGTDRLLSRVT----------PKTGV------VVKRVNTCDLDEVASAIG---PWTKLVW  144 (265)
Q Consensus        86 ~~~--~~~~g~~viv~~~~~~~~~~~~~~~~----------~~~g~------~~~~~~~~d~~~l~~~~~---~~~~~i~  144 (265)
                      +..  .+.+++.|++.+|+|+++........          ...|+      ++..++..|++++++.+.   +++++|+
T Consensus       125 l~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi  204 (424)
T 2e7u_A          125 LRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEYNDPEGLREVLKRRGEEIAAII  204 (424)
T ss_dssp             HHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEE
T ss_pred             HHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCCCCHHHHHHHHHhCCCCEEEEE
Confidence            443  24456889999999988642110111          11232      355666779999998886   4567777


Q ss_pred             EecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCCCCcCC-----CCCCccEEEeccccccccCCCceeeEEEe
Q 024619          145 VESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAV  215 (265)
Q Consensus       145 ~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~~~~~~~~-----~~~~~di~~~s~sK~~~g~~g~~~G~v~~  215 (265)
                      +++.++++|.+.+    +++|.++ ++||+++|+||+|+....+..     .....|++  |++|+++ + |+++|++++
T Consensus       205 ~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~~~g~~~~~~~~~~~~di~--s~sK~l~-~-G~~~G~~~~  279 (424)
T 2e7u_A          205 FEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGFRLAFGGATELLGLKPDLV--TLGKILG-G-GLPAAAYAG  279 (424)
T ss_dssp             ECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTTTSSTTHHHHHHTCCCSEE--EECGGGG-T-TSSCEEEEE
T ss_pred             EeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCccccccchhHHHHHhCCCcchh--hhhhhhh-C-CcceEEEEE
Confidence            7665556898877    9999999 999999999999982211211     12235665  8899995 3 688999998


Q ss_pred             echhH
Q 024619          216 KGERL  220 (265)
Q Consensus       216 ~~~~~  220 (265)
                      +++.+
T Consensus       280 ~~~~~  284 (424)
T 2e7u_A          280 RREIM  284 (424)
T ss_dssp             CHHHH
T ss_pred             cHHHH
Confidence            87543

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=99.74  E-value=2e-18  Score=149.26  Aligned_cols=150  Identities=15%  Similarity=0.083  Sum_probs=110.9

Q ss_pred             hHHHHHHHHHhHhCCC---ceEEecch-HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC---
Q 024619           56 TRDALESLLAKLDKAD---RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~---~~i~~~~g-~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---  127 (265)
                      .++++++++++++|.+   +++++++| ++++. ++..++++||+|++.++.+.+..  +...++..| +++.++.+   
T Consensus        50 ~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~--~~~~~~~~g-~~~~v~~~~~~  126 (362)
T 2c0r_A           50 VHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFLKEGQTANYVMTGSWASK--ALKEAKLIG-DTHVAASSEAS  126 (362)
T ss_dssp             HHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHH--HHHHHHHHS-CEEEEEECGGG
T ss_pred             HHHHHHHHHHHHhCCCCCcEEEEECCCchHHHHHHHHhcCCCCCeEEEEecCcHhHH--HHHHHHHhC-CeEEEeccccc
Confidence            4789999999999987   34566554 58886 77788999999988766543321  123344456 66666532   


Q ss_pred             ------CHHHHHhhcCCCceEEEEecCCCCcccc-ccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEecccc
Q 024619          128 ------DLDEVASAIGPWTKLVWVESPTNPRQQI-CDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATK  200 (265)
Q Consensus       128 ------d~~~l~~~~~~~~~~i~~~~~~np~G~~-~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK  200 (265)
                            |.++++  +.+++++|++++++||||.+ .|+++|      +|+++++|++|+.+....... +.|++++|+||
T Consensus       127 ~~~~~~~~~~~~--i~~~t~~v~~~~~~n~tG~~~~~l~~i------~~~~vivD~a~~~~~~~~~~~-~~d~~~~s~~K  197 (362)
T 2c0r_A          127 NYMTLPKLQEIQ--LQDNAAYLHLTSNETIEGAQFKAFPDT------GSVPLIGDMSSDILSRPFDLN-QFGLVYAGAQK  197 (362)
T ss_dssp             TTCSCCCGGGCC--CCTTEEEEEEESEETTTTEECSSCCCC------TTSCEEEECTTTTTSSCCCGG-GCSEEEEETTT
T ss_pred             ccccCCCHHHcc--cCCCcCEEEEeCCcCccceeccccccc------CCCEEEEEChhhccCCccchh-HCcEEEEeccc
Confidence                  333332  67789999999999999996 677776      899999999999886542222 24899999999


Q ss_pred             ccccCCCceeeEEEeechhH
Q 024619          201 FIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       201 ~~~g~~g~~~G~v~~~~~~~  220 (265)
                      ++ ||+|  +|+++++++.+
T Consensus       198 ~~-g~~G--~G~l~~~~~~~  214 (362)
T 2c0r_A          198 NL-GPSG--VTVVIVREDLV  214 (362)
T ss_dssp             TT-CCSS--CEEEEEEGGGS
T ss_pred             cc-cCcC--cEEEEEcHHHH
Confidence            99 6887  69998887654

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=99.74  E-value=1.3e-17  Score=148.77  Aligned_cols=232  Identities=16%  Similarity=0.156  Sum_probs=140.4

Q ss_pred             cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhC---CCceEEecchHHHH
Q 024619            9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK---ADRALCFTSGMAAL   83 (265)
Q Consensus         9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g---~~~~i~~~~g~~al   83 (265)
                      .+.++++|+++  ...+|..+|.+..+..-+...   ...+.+.....+.+.+++++++++++   .+.++++++|++|+
T Consensus        59 ~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~---~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~  135 (451)
T 3oks_A           59 DGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGD---FTHTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAV  135 (451)
T ss_dssp             TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTT---CSCCTTTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHHHHH
T ss_pred             CCCEEEEcCCCccccccCCCCHHHHHHHHHHHHh---cccccCCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHH
Confidence            34678999843  566887766666554322222   11222222234568999999999985   34688888889998


Q ss_pred             H-HHHHhcC--CCCEEEEcCCCCCChHHHHHhhcCC----------CCeEEEeecCC------------------CHHHH
Q 024619           84 A-AVTHLLG--TGEEIVAGDDLYGGTDRLLSRVTPK----------TGVVVKRVNTC------------------DLDEV  132 (265)
Q Consensus        84 ~-~~~~~~~--~g~~viv~~~~~~~~~~~~~~~~~~----------~g~~~~~~~~~------------------d~~~l  132 (265)
                      . ++..+..  .++.|++.+++|+++..........          ....+..++.+                  +++.+
T Consensus       136 ~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  215 (451)
T 3oks_A          136 ENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRA  215 (451)
T ss_dssp             HHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHH
Confidence            6 4444432  4588999999998776443222111          11123344433                  23333


Q ss_pred             Hhhc----C-CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CCCCCccEEEec
Q 024619          133 ASAI----G-PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHS  197 (265)
Q Consensus       133 ~~~~----~-~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~~~~~di~~~s  197 (265)
                      ++.+    . +++++|++++.++..|.+.+    +++|.++|++||+++|+||+|. .+..+.     ......|++  |
T Consensus       216 ~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~--t  293 (451)
T 3oks_A          216 ITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLI--V  293 (451)
T ss_dssp             HHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--E
T ss_pred             HHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccchhhhhcCCCCCee--e
Confidence            3333    3 34667777776666677655    9999999999999999999997 222221     112245665  7


Q ss_pred             cccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619          198 ATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       198 ~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      ++|.+++  |++.|+++++++.+ +.+...........++..++..+..++
T Consensus       294 ~sK~l~~--G~~iG~v~~~~~~~-~~~~~~~~~~t~~~~~~~~aaa~aal~  341 (451)
T 3oks_A          294 TAKGIAG--GLPLSAVTGRAEIM-DSPHVSGLGGTYGGNPIACAAALATIE  341 (451)
T ss_dssp             ECGGGGT--TSSCEEEEEEHHHH-TCSCTTSBCCSSSSCHHHHHHHHHHHH
T ss_pred             ehhhhhC--CcceEEEEECHHHH-hhhcCCCcCCCCCCCHHHHHHHHHHHH
Confidence            8899954  68999998876543 323222233344556666555444443

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=99.74  E-value=1.1e-17  Score=149.95  Aligned_cols=232  Identities=16%  Similarity=0.077  Sum_probs=148.2

Q ss_pred             cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCC--CChhHHHHHHHHHhHhCC--CceEEecchHHH
Q 024619            9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRS--GNPTRDALESLLAKLDKA--DRALCFTSGMAA   82 (265)
Q Consensus         9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~--g~~~~~~l~~~l~~~~g~--~~~i~~~~g~~a   82 (265)
                      .+.++|+|.++  ...+|..+|.+..+..-+...    ..+.|+..  ..+...+++++++++++.  +.++++++|++|
T Consensus        53 ~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~----~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~~v~~~~sGseA  128 (472)
T 3hmu_A           53 EGEEILDAMAGLWCVNIGYGRDELAEVAARQMRE----LPYYNTFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEA  128 (472)
T ss_dssp             TCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHH----CSCCCSSSSEECHHHHHHHHHHHHHSCTTEEEEEEESSHHHH
T ss_pred             CCCEEEECCCchhhccCCCCCHHHHHHHHHHHHh----ccccccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHH
Confidence            35689999843  577998766666654322211    12223322  346789999999999854  467888888999


Q ss_pred             HH-HHHHhcC--------CCCEEEEcCCCCCChHHHHHhhcC----------CCCeEEEeecC----C---C--------
Q 024619           83 LA-AVTHLLG--------TGEEIVAGDDLYGGTDRLLSRVTP----------KTGVVVKRVNT----C---D--------  128 (265)
Q Consensus        83 l~-~~~~~~~--------~g~~viv~~~~~~~~~~~~~~~~~----------~~g~~~~~~~~----~---d--------  128 (265)
                      +. ++..+.+        +++.|++.+++|+.+.........          ..+...+..|.    .   |        
T Consensus       129 ~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~~~~~  208 (472)
T 3hmu_A          129 NDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGDMDPEEFGLAR  208 (472)
T ss_dssp             HHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcccCHHHHHHHH
Confidence            86 5554443        468899999999887543322211          11333333332    1   1        


Q ss_pred             HHHHHhhcC----CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CCCCCccEE
Q 024619          129 LDEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIV  194 (265)
Q Consensus       129 ~~~l~~~~~----~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~~~~~di~  194 (265)
                      ++++++.+.    +++++|+++++++++|.+.+    +++|.++|++||+++|+||+|. .+..+.     ......|++
T Consensus       209 ~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~pdi~  288 (472)
T 3hmu_A          209 ARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIM  288 (472)
T ss_dssp             HHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEE
T ss_pred             HHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCccchhHHhCCCCcee
Confidence            677877775    56788999999999998876    9999999999999999999997 333321     112346776


Q ss_pred             EeccccccccCCCceeeEEEeechhHHHHHHHH--HHhccCCCChhHHHHHHhccC
Q 024619          195 MHSATKFIAGHSDVMAGVLAVKGERLAKELYFL--QNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       195 ~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~  248 (265)
                        +++|.++ .++++.|+++++++.+ +.+...  ........++..++..+..|+
T Consensus       289 --t~sK~l~-gg~~plG~v~~~~~i~-~~~~~~~~~~~~t~~~np~a~aAa~aaL~  340 (472)
T 3hmu_A          289 --TIAKGLS-SGYAPIGGSIVCDEVA-HVIGKDEFNHGYTYSGHPVAAAVALENLR  340 (472)
T ss_dssp             --EECGGGT-TTSSCCEEEEEEHHHH-HHHTTSCBCCCCTTTTCHHHHHHHHHHHH
T ss_pred             --eechhhh-cCCcceEEEEECHHHH-HhcccCCccccCCCCCCHHHHHHHHHHHH
Confidence              4689984 4557889998876544 333111  111233445666555555444

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=99.74  E-value=5.5e-18  Score=149.99  Aligned_cols=202  Identities=15%  Similarity=0.166  Sum_probs=130.6

Q ss_pred             cceeEeeccCCC--CCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHh-CCCceEEecchHHHHH-
Q 024619            9 VSTLLMNFSNEF--DPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD-KADRALCFTSGMAALA-   84 (265)
Q Consensus         9 ~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~-g~~~~i~~~~g~~al~-   84 (265)
                      .+.++++|+++.  ..+|..+|.+..+..-....   ...+.|   ..+...++++++++++ +.+.++++++|++|+. 
T Consensus        51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~---~~~~~~---~~~~~~~la~~l~~~~~~~~~v~~~~sGsea~~~  124 (429)
T 4e77_A           51 DGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVER---GLSFGA---PTEMEVKMAQLVTDLVPTMDMVRMVNSGTEATMS  124 (429)
T ss_dssp             TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTT---CSCCSS---CCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHH
T ss_pred             CCCEEEECCCchhccccCCCCHHHHHHHHHHHHh---CcccCC---CCHHHHHHHHHHHhhCCCCCEEEEeCcHHHHHHH
Confidence            346789997433  56887666666554322221   111222   2367889999999988 4557888888899986 


Q ss_pred             HHHHh--cCCCCEEEEcCCCCCChHHHHHh----------hcCCCC------eEEEeecCCCHHHHHhhcC---CCceEE
Q 024619           85 AVTHL--LGTGEEIVAGDDLYGGTDRLLSR----------VTPKTG------VVVKRVNTCDLDEVASAIG---PWTKLV  143 (265)
Q Consensus        85 ~~~~~--~~~g~~viv~~~~~~~~~~~~~~----------~~~~~g------~~~~~~~~~d~~~l~~~~~---~~~~~i  143 (265)
                      ++...  ..+++.|++.++.|++.......          .....+      ..+..++..|++++++++.   +++++|
T Consensus       125 al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~v  204 (429)
T 4e77_A          125 AIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLASVRQAFEQYPQEVACI  204 (429)
T ss_dssp             HHHHHHHHHCCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECTTCHHHHHHHHHHSTTTEEEE
T ss_pred             HHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCCCHHHHHHHHHhcCCCEEEE
Confidence            44432  23567899999999887631100          001111      1345556668999998885   456777


Q ss_pred             EEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCC---CCCc--CCCCCCccEEEeccccccccCCCceeeEEE
Q 024619          144 WVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS---PVLS--RPLELGADIVMHSATKFIAGHSDVMAGVLA  214 (265)
Q Consensus       144 ~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~~---~~~~--~~~~~~~di~~~s~sK~~~g~~g~~~G~v~  214 (265)
                      ++++.++.+|.+.+    +++|.++|++||+++|+||+|..   +...  .......|++  |+||.++  +|+++|+++
T Consensus       205 i~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~r~g~~~~~~~~~~~pdi~--t~sK~~~--~G~~~G~~~  280 (429)
T 4e77_A          205 IVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGFRVALAGAQDYYHVIPDLT--CLGKIIG--GGMPVGAFG  280 (429)
T ss_dssp             EECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBTTTBTTCHHHHTTCCCSEE--EEEGGGG--TTSCCEEEE
T ss_pred             EECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcccCcchHHHhcCCCCCee--eeccccc--CCCCeEEEE
Confidence            77766666677776    99999999999999999999982   2111  1112345664  7899995  368899998


Q ss_pred             eechhH
Q 024619          215 VKGERL  220 (265)
Q Consensus       215 ~~~~~~  220 (265)
                      .+++.+
T Consensus       281 ~~~~~~  286 (429)
T 4e77_A          281 GRREVM  286 (429)
T ss_dssp             ECHHHH
T ss_pred             ECHHHH
Confidence            876543

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=99.73  E-value=1.6e-17  Score=148.26  Aligned_cols=232  Identities=17%  Similarity=0.176  Sum_probs=139.9

Q ss_pred             cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhC---CCceEEecchHHHH
Q 024619            9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK---ADRALCFTSGMAAL   83 (265)
Q Consensus         9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g---~~~~i~~~~g~~al   83 (265)
                      .+.++|+|+++  ...+|..+|.+.++..-+...   ...+.+.....+.+.+++++++++++   .+.++++++|++|+
T Consensus        62 ~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~---~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~  138 (453)
T 4ffc_A           62 DGNSFIDLGAGIAVTTVGASHPAVAAAIADQATH---FTHTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAV  138 (453)
T ss_dssp             TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHH---CSCCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHH
T ss_pred             CCCEEEEcCCCcccCcCCCCCHHHHHHHHHHHHh---ccccccCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHH
Confidence            34679999843  567888766665554322211   11222222234668999999999986   34678888889998


Q ss_pred             H-HHHHhc--CCCCEEEEcCCCCCChHHHHHhhcCC------------CCeEEEeecCC--C-------------HHHHH
Q 024619           84 A-AVTHLL--GTGEEIVAGDDLYGGTDRLLSRVTPK------------TGVVVKRVNTC--D-------------LDEVA  133 (265)
Q Consensus        84 ~-~~~~~~--~~g~~viv~~~~~~~~~~~~~~~~~~------------~g~~~~~~~~~--d-------------~~~l~  133 (265)
                      . ++..+.  ..++.|++.+++|+++..........            .+...+.++..  |             .+.++
T Consensus       139 ~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~  218 (453)
T 4ffc_A          139 ENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIE  218 (453)
T ss_dssp             HHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHH
Confidence            6 443433  24588999999998776443222111            13333333311  2             35666


Q ss_pred             hhcCCC-ceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcCCC-----CCCccEEEecccccc
Q 024619          134 SAIGPW-TKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSRPL-----ELGADIVMHSATKFI  202 (265)
Q Consensus       134 ~~~~~~-~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~~~-----~~~~di~~~s~sK~~  202 (265)
                      +.+.++ +++|++++.++..|.+.+    +++|.++|++||+++|+||+|. .+..+...     ....|++  +++|.+
T Consensus       219 ~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~--t~sK~~  296 (453)
T 4ffc_A          219 TQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVPDIV--TMAKGI  296 (453)
T ss_dssp             HHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGG
T ss_pred             HhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcCCCcchH--hhhhhh
Confidence            666544 555666655445556654    8999999999999999999996 33222111     2234555  678999


Q ss_pred             ccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619          203 AGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       203 ~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      + + |++.|+++++++.+ +.+...........++..++..+..|+
T Consensus       297 ~-~-G~~~G~~~~~~~i~-~~~~~~~~~~t~~~~~~~~aaa~aal~  339 (453)
T 4ffc_A          297 A-G-GMPLSAVTGRAELM-DAVYAGGLGGTYGGNPVTCAAAVAALG  339 (453)
T ss_dssp             G-T-TSSCEEEEEEHHHH-TTSCTTSSCCSSSSCHHHHHHHHHHHH
T ss_pred             c-C-CcCeEEEEECHHHH-hhhcccCcCCCCCcCHHHHHHHHHHHH
Confidence            4 4 68999998876543 323222233344555665554444443

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=99.72  E-value=2.8e-17  Score=145.97  Aligned_cols=157  Identities=21%  Similarity=0.218  Sum_probs=120.3

Q ss_pred             hHHHHHHHHHhHhCCCc--eEEecchHHHHH-HHHH-hcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC----
Q 024619           56 TRDALESLLAKLDKADR--ALCFTSGMAALA-AVTH-LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----  127 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~~--~i~~~~g~~al~-~~~~-~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----  127 (265)
                      ..+++++.+++++|.+.  ++++++++.+.. +.+. ..++||+|+++.+.|+++...+...++..|++++.++..    
T Consensus       109 ~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~~~~~~  188 (438)
T 1wyu_A          109 ATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGRT  188 (438)
T ss_dssp             HHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTBC
T ss_pred             HHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcCcCCcc
Confidence            48899999999999873  345555554433 2222 357899999999999999887766667789999999853    


Q ss_pred             CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCC-cCCCCCcCCCCCCccEEEecccc-----c
Q 024619          128 DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS-IMSPVLSRPLELGADIVMHSATK-----F  201 (265)
Q Consensus       128 d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~-~~~~~~~~~~~~~~di~~~s~sK-----~  201 (265)
                      |+++    +.+++++|++++| ||+|.+.|+++|+++|+++|+++++|.. ++.+....+...+.|++++|.+|     |
T Consensus       189 d~~~----i~~~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~~~~~~~~g~D~~~~s~kk~~~~~~  263 (438)
T 1wyu_A          189 PLPE----VGEEVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPPGAYGADIAVGDGQSLGLPMG  263 (438)
T ss_dssp             CCCC----CCTTEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCCHHHHTCSEEEEECTTTTCCCG
T ss_pred             CHHH----hCCCeEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEechhhccCcCCCccCCCCEEEECCcccCCCcc
Confidence            2333    6678999999999 9999999999999999999999997733 55555544555678999999554     5


Q ss_pred             cccCCCceeeEEEeechhH
Q 024619          202 IAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       202 ~~g~~g~~~G~v~~~~~~~  220 (265)
                      ++|| +  +|+++++++.+
T Consensus       264 ~~Gp-~--~G~l~~~~~~~  279 (438)
T 1wyu_A          264 FGGP-H--FGFLATKKAFV  279 (438)
T ss_dssp             GGCS-C--CEEEEECGGGG
T ss_pred             CCCC-C--eeEEEEcHHHH
Confidence            6565 4  69998887644

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=99.72  E-value=4e-18  Score=147.02  Aligned_cols=150  Identities=15%  Similarity=0.153  Sum_probs=111.6

Q ss_pred             hHHHHHHHHHhHhCCC--ceE-Eecch-HHHHH-HHHHhcCC---CCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC
Q 024619           56 TRDALESLLAKLDKAD--RAL-CFTSG-MAALA-AVTHLLGT---GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC  127 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~~i-~~~~g-~~al~-~~~~~~~~---g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  127 (265)
                      ..+++++++++++|.+  +.+ +++++ ++|+. ++..++.+   ||.|+++.+.|...     ..++..| +++.++.+
T Consensus        49 ~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~~~l~~~~~~g~~vi~~~~~~~~~-----~~~~~~g-~~~~v~~~  122 (360)
T 1w23_A           49 VHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKAL-----KEAKLLG-ETHIAAST  122 (360)
T ss_dssp             HHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHH-----HHHHTTS-EEEEEEEC
T ss_pred             HHHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHHHHhcCCCCcccEEEecchhHHHH-----HHHHHhC-CeEEeecc
Confidence            4889999999999986  244 55555 68886 56777765   55677666655432     2345678 88888742


Q ss_pred             ------CHHHHHh-hcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEecccc
Q 024619          128 ------DLDEVAS-AIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATK  200 (265)
Q Consensus       128 ------d~~~l~~-~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK  200 (265)
                            |++++++ ++.+++++|++++++||||.+.+  +   +++++|+++|+|++|+.+....... ..|++++|+||
T Consensus       123 ~~~~~~d~~~l~~~~i~~~~k~v~~~~~~nptG~~~~--~---i~~~~~~~li~D~a~~~~~~~~~~~-~~di~~~s~sK  196 (360)
T 1w23_A          123 KANSYQSIPDFSEFQLNENDAYLHITSNNTIYGTQYQ--N---FPEINHAPLIADMSSDILSRPLKVN-QFGMIYAGAQK  196 (360)
T ss_dssp             GGGTSCSCCCGGGCCCCTTEEEEEEESEETTTTEECS--S---CCCCCSSCEEEECTTTTTSSCCCGG-GCSEEEEETTT
T ss_pred             cccCcCCccchHhhccCCCCCEEEEeCCCCCcceecc--c---ccccCCceEEEechhhcCCCCcCcc-cCCEEEEEccc
Confidence                  6788888 88888999999999999999976  3   3338999999999999876542222 23899999999


Q ss_pred             ccccCCCceeeEEEeechhH
Q 024619          201 FIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       201 ~~~g~~g~~~G~v~~~~~~~  220 (265)
                      ++ +++|  .|+++++++.+
T Consensus       197 ~~-~~~G--~G~~~~~~~~~  213 (360)
T 1w23_A          197 NL-GPSG--VTVVIVKKDLL  213 (360)
T ss_dssp             TT-SCTT--CEEEEEEHHHH
T ss_pred             cc-CCCC--cEEEEEcHHHH
Confidence            99 5777  58888887554

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=99.71  E-value=1e-17  Score=150.25  Aligned_cols=158  Identities=13%  Similarity=0.044  Sum_probs=122.1

Q ss_pred             HHHHHHHHHhHhCCC-----------ceEEecchHHHHH-HHHHhc-------------------CCCCEEEEcCCCCCC
Q 024619           57 RDALESLLAKLDKAD-----------RALCFTSGMAALA-AVTHLL-------------------GTGEEIVAGDDLYGG  105 (265)
Q Consensus        57 ~~~l~~~l~~~~g~~-----------~~i~~~~g~~al~-~~~~~~-------------------~~g~~viv~~~~~~~  105 (265)
                      .+++.+++++++|.+           ..+++++|++++. ++....                   .+++.|+++..+|.+
T Consensus       115 E~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s  194 (475)
T 3k40_A          115 EVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSS  194 (475)
T ss_dssp             HHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSCHH
T ss_pred             HHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCchHH
Confidence            556677889999876           3677888887763 443331                   134689999999988


Q ss_pred             hHHHHHhhcCCCCeEEEeecCC----CHHHHHhhcCCC------ceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEe
Q 024619          106 TDRLLSRVTPKTGVVVKRVNTC----DLDEVASAIGPW------TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVD  175 (265)
Q Consensus       106 ~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~~~~~------~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D  175 (265)
                      +..    .++..|++++.++.+    |++++++++.++      +.+|+++.++|++|.+.|+++|+++|++||+++++|
T Consensus       195 ~~~----~~~~~g~~~~~v~~d~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~~~~~lhvD  270 (475)
T 3k40_A          195 VER----AGLLGGVKLRSVQSENHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVD  270 (475)
T ss_dssp             HHH----HHHHHTCEEEEECCBTTBCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEE
T ss_pred             HHH----HHHHcCCceEEEECCCCCcCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHHHHHhCCeEEEe
Confidence            874    345578899999874    899999998643      667888999999999999999999999999999999


Q ss_pred             CCcCCCCCcCCC----C---CCccEEEeccccccccCCCceeeEEEeechhH
Q 024619          176 NSIMSPVLSRPL----E---LGADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       176 ~~~~~~~~~~~~----~---~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                      ++|+.+....+.    .   ...|.++.++|||+++|.|  +|+++.++...
T Consensus       271 ~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g--~g~l~~~~~~~  320 (475)
T 3k40_A          271 AAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFD--CSAMWLKDPSW  320 (475)
T ss_dssp             CTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSS--CEEEEESSGGG
T ss_pred             HHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCc--eEEEEEeCHHH
Confidence            999876542211    1   1359999999999988887  47777776543

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=99.71  E-value=4.9e-17  Score=146.10  Aligned_cols=170  Identities=15%  Similarity=0.075  Sum_probs=128.1

Q ss_pred             CCCccCCC-CCh-hHHHHHHHHHhHhCCCc------------eEEecchHHHHH-HHHHhc-------------------
Q 024619           45 GPYDYTRS-GNP-TRDALESLLAKLDKADR------------ALCFTSGMAALA-AVTHLL-------------------   90 (265)
Q Consensus        45 ~~~~y~~~-g~~-~~~~l~~~l~~~~g~~~------------~i~~~~g~~al~-~~~~~~-------------------   90 (265)
                      ....|... +.. ..+++.+++++++|.+.            .+++++|++++. ++....                   
T Consensus       106 ~~~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~  185 (481)
T 4e1o_A          106 LGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSL  185 (481)
T ss_dssp             CCSSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHH
T ss_pred             ccCCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccc
Confidence            34455554 222 36667778889988762            477788887763 444332                   


Q ss_pred             CCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-----CHHHHHhhcCCC------ceEEEEecCCCCccccccHH
Q 024619           91 GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPW------TKLVWVESPTNPRQQICDIR  159 (265)
Q Consensus        91 ~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~~~~~------~~~i~~~~~~np~G~~~~l~  159 (265)
                      .+++.|+++..+|.++...    ++..|.+++.++.+     |++++++++.++      +.+|+++.++|++|.+.|++
T Consensus       186 ~~~~~v~~s~~~H~s~~~~----~~~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~  261 (481)
T 4e1o_A          186 NARLVAYASDQAHSSVEKA----GLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLS  261 (481)
T ss_dssp             HTTEEEEEETTSCHHHHHH----HHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHH
T ss_pred             cCCeEEEEcCcchHHHHHH----HHhCCCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHH
Confidence            1567899999999888744    34568899999865     899999998643      67788899999999999999


Q ss_pred             HHHHHHHHcCCEEEEeCCcCCCCCcCC----CCCC---ccEEEeccccccccCCCceeeEEEeechhH
Q 024619          160 KIAEMAHAHGALLLVDNSIMSPVLSRP----LELG---ADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       160 ~i~~~a~~~~~~li~D~~~~~~~~~~~----~~~~---~di~~~s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                      +|+++|++||+++++|++|+.+.+..+    ...+   .|.++.++|||+++|.|  +|+++.++...
T Consensus       262 ~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g--~g~l~~~~~~~  327 (481)
T 4e1o_A          262 ELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFD--CTGFWVKDKYK  327 (481)
T ss_dssp             HHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSS--CEEEEESBHHH
T ss_pred             HHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCc--eEEEEEeCHHH
Confidence            999999999999999999987654321    1123   59999999999999887  47777777654

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=99.54  E-value=7.7e-19  Score=156.59  Aligned_cols=201  Identities=16%  Similarity=0.110  Sum_probs=138.5

Q ss_pred             cceeEeeccCCCCC---CCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHh-CCCceEEecchHHHHH
Q 024619            9 VSTLLMNFSNEFDP---YGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD-KADRALCFTSGMAALA   84 (265)
Q Consensus         9 ~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~-g~~~~i~~~~g~~al~   84 (265)
                      .+.++|+|. ++.+   +|..+|.+..+..-   +......+.|   .++...++++.+++++ +.+.+++++||++|+.
T Consensus        98 dG~~yiD~~-~~~~~~~lGh~~p~V~~Av~~---q~~~~~~~~~---~~~~~~~Lae~L~~~~p~~~~v~~~nSGseA~~  170 (465)
T 2yky_A           98 DGHAYVNFL-GEYTAGLFGHSHPVIRAAVER---ALAVGLNLST---QTENEALFAEAVCDRFPSIDLVRFTNSGTEANL  170 (465)
Confidence            457899998 5554   78766666655432   2111111111   3356888999999998 6777889999999986


Q ss_pred             -HHHHh--cCCCCEEEEcCCCCCChHHHHHhhcCCCCe--EEEeecCCCHHHHHhhcC---CCceEEEEecCCCCccccc
Q 024619           85 -AVTHL--LGTGEEIVAGDDLYGGTDRLLSRVTPKTGV--VVKRVNTCDLDEVASAIG---PWTKLVWVESPTNPRQQIC  156 (265)
Q Consensus        85 -~~~~~--~~~g~~viv~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~d~~~l~~~~~---~~~~~i~~~~~~np~G~~~  156 (265)
                       ++..+  ...+++|++.+++|++.......-....|+  .+..++..|++++++++.   +++++|++++.++++|.+.
T Consensus       171 ~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~  250 (465)
T 2yky_A          171 MALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVYNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVP  250 (465)
Confidence             44332  244689999999998865321100012334  445556678999998887   6789999988777799876


Q ss_pred             c----HHHHHHHHHHcCCEEEEeCCcCCCCCcCCC-----CCCccEEEeccccccccCCCceeeEEEeechhHH
Q 024619          157 D----IRKIAEMAHAHGALLLVDNSIMSPVLSRPL-----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA  221 (265)
Q Consensus       157 ~----l~~i~~~a~~~~~~li~D~~~~~~~~~~~~-----~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~  221 (265)
                      +    +++|.++|++||+++|+||+|. +..+...     ....|++  |++|++++  |+++|+++++++.+.
T Consensus       251 ~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~~~a~~~~gv~pDi~--t~sK~lg~--G~piG~v~~~~~i~~  319 (465)
T 2yky_A          251 AERAFLDLLRAEASRCGALLIFDEVMT-SRLSGGGAQEMLGISADLT--TLGKYIGG--GMSFGAFGGRRDLME  319 (465)
Confidence            6    9999999999999999999999 5332111     1234554  79999954  688999988876543

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=99.69  E-value=9.9e-17  Score=142.88  Aligned_cols=198  Identities=13%  Similarity=0.061  Sum_probs=126.3

Q ss_pred             ceeEeeccCC--CCCCCCCCCCee-e-cccc---ccCCCCCCCCCccCCC-CChhHHHHHHHHHhHhC---CCceEEecc
Q 024619           10 STLLMNFSNE--FDPYGALSTPLY-Q-TATF---KQPSATENGPYDYTRS-GNPTRDALESLLAKLDK---ADRALCFTS   78 (265)
Q Consensus        10 ~~~~~~~~~~--~~~~g~~~~~~~-~-~~~~---~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~g---~~~~i~~~~   78 (265)
                      +..+++|++.  ...+|..+|.+. + +..-   ....   ..  .|+.. ..+...++++.++++++   .+.++++++
T Consensus        53 g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~---~~--~~~~~~~~~~~~~la~~la~~~~~~~~~~v~~~~~  127 (449)
T 2cjg_A           53 GRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAAL---NK--PSNSDVYSVAMARFVETFARVLGDPALPHLFFVEG  127 (449)
T ss_dssp             CCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHT---CC--CCTTTCCCHHHHHHHHHHHHHHCCTTCCEEEEESS
T ss_pred             CcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHh---cC--CCCcccCCHHHHHHHHHHHHhcCCCCCCEEEEeCc
Confidence            4568888522  245777655555 4 4332   1111   11  13322 34568899999999985   346777778


Q ss_pred             hHHHHH-HHHHh---cC----------C-CCEEEEcCCCCCChHHHHHhhcC----------CCCeEEEeecCCC--HH-
Q 024619           79 GMAALA-AVTHL---LG----------T-GEEIVAGDDLYGGTDRLLSRVTP----------KTGVVVKRVNTCD--LD-  130 (265)
Q Consensus        79 g~~al~-~~~~~---~~----------~-g~~viv~~~~~~~~~~~~~~~~~----------~~g~~~~~~~~~d--~~-  130 (265)
                      |++|+. ++..+   ..          + |++|++.+|.|+++...+.....          ....++..++.+|  .+ 
T Consensus       128 gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  207 (449)
T 2cjg_A          128 GALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDE  207 (449)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCH
T ss_pred             hHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCchhhc
Confidence            889986 44322   12          2 89999999999886532111111          1112556666655  32 


Q ss_pred             ------------HHHhhcC---CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcCC----
Q 024619          131 ------------EVASAIG---PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSRP----  186 (265)
Q Consensus       131 ------------~l~~~~~---~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~~----  186 (265)
                                  ++++.+.   +++++|++++++|++|.+.+    +++|.++|++||+++|+||+|+ .+..+..    
T Consensus       208 ~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~  287 (449)
T 2cjg_A          208 PAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAWAYQ  287 (449)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSTHH
T ss_pred             cccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCcceeec
Confidence                        3777773   67889998888899997665    9999999999999999999998 3332211    


Q ss_pred             -CCCCccEEEeccccccccCCCceeeEEEeechhH
Q 024619          187 -LELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       187 -~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                       .....|++  |+||++  |    .|+++++++.+
T Consensus       288 ~~~~~~di~--t~sK~l--~----iG~~~~~~~~~  314 (449)
T 2cjg_A          288 QLDVAPDIV--AFGKKT--Q----VCGVMAGRRVD  314 (449)
T ss_dssp             HHTCCCSEE--EECGGG--S----SEEEEECGGGG
T ss_pred             ccCCCceEE--EecCcc--c----EEEEEECHHHh
Confidence             12345765  678988  3    57787776443

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=99.68  E-value=3.3e-16  Score=139.83  Aligned_cols=162  Identities=17%  Similarity=0.193  Sum_probs=110.9

Q ss_pred             ccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHhcCC-----C----CEEEEcCCCCCChHHHHHhhcCCC
Q 024619           48 DYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGT-----G----EEIVAGDDLYGGTDRLLSRVTPKT  117 (265)
Q Consensus        48 ~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~~~~-----g----~~viv~~~~~~~~~~~~~~~~~~~  117 (265)
                      .|+..  +...++++++++++|.+.++++++|++|+. ++..+.++     |    |+|++..+.|..+....    ...
T Consensus        69 ~y~~~--~~~~~l~~~la~~~~~~~v~~t~~gt~A~~~al~~~~~~~~~~~G~~~~d~Ii~~~~h~~t~~~~~----~~~  142 (467)
T 2oqx_A           69 AYSGS--RSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHS----QIN  142 (467)
T ss_dssp             CSSSC--HHHHHHHHHHHHHHCCSEEEEEC--CCSHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHH----HHT
T ss_pred             eeccC--chhHHHHHHHHHHhCcCcEEEcCCcHHHHHHHHHHHhccccccCCCCccceEEecccccccchhhh----hcc
Confidence            45433  567889999999999988888888888875 66666777     8    98887733222222111    222


Q ss_pred             CeEEEee------c---------CCCHHHHHhhcC----CCceEEEEecCCCCc-cccc---cHHHHHHHHHHcCCEEEE
Q 024619          118 GVVVKRV------N---------TCDLDEVASAIG----PWTKLVWVESPTNPR-QQIC---DIRKIAEMAHAHGALLLV  174 (265)
Q Consensus       118 g~~~~~~------~---------~~d~~~l~~~~~----~~~~~i~~~~~~np~-G~~~---~l~~i~~~a~~~~~~li~  174 (265)
                      |..+...      +         ..|++++++++.    +++++|++++++||+ |.+.   ++++|.++|++||+++|+
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~  222 (467)
T 2oqx_A          143 GCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVM  222 (467)
T ss_dssp             TCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred             CcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence            3333321      1         127899999986    379999999999998 7764   478999999999999999


Q ss_pred             eCCcCC-C----------CCcC-CCC------CCccEEEeccccccccCCCceeeEEEeech
Q 024619          175 DNSIMS-P----------VLSR-PLE------LGADIVMHSATKFIAGHSDVMAGVLAVKGE  218 (265)
Q Consensus       175 D~~~~~-~----------~~~~-~~~------~~~di~~~s~sK~~~g~~g~~~G~v~~~~~  218 (265)
                      |++++. +          ..+. ...      ...|+++.|+||+++.|   .+|+++.+++
T Consensus       223 D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~g~~---~Gg~~~~~~~  281 (467)
T 2oqx_A          223 DSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVP---MGGLLCMKDD  281 (467)
T ss_dssp             ECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCS---SCEEEEECSG
T ss_pred             EchhhhhhhhhcccccccccCccHHHHhhhhhccCCeEEEecccccCCC---CceEEEecCh
Confidence            977654 2          1121 111      23678899999999544   2578877765

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=99.67  E-value=1.5e-16  Score=139.32  Aligned_cols=156  Identities=12%  Similarity=0.021  Sum_probs=105.9

Q ss_pred             hHHHHHHHHHhHhCCC--ceEE--ecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCC--CeEEEeecCCC
Q 024619           56 TRDALESLLAKLDKAD--RALC--FTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT--GVVVKRVNTCD  128 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~~i~--~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~d  128 (265)
                      ..+++++++++++|.+  +.++  +++|++++. ++..++++| .+++..+.|....   ...+...  |.+++.++.++
T Consensus        79 ~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~~~g-v~~v~~~~~~~~~---~~~~~~~~~g~~~~~v~~~~  154 (398)
T 2fyf_A           79 LVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLIDKR-SLHLTYGEFSAKF---ASAVSKNPFVGEPIIITSDP  154 (398)
T ss_dssp             HHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTCSSC-EEEEECSHHHHHH---HHHHHHCTTSCCCEEEECCT
T ss_pred             HHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhcCCC-eEEEeCCHHHHHH---HHHHHHhCCCCceEEEecCC
Confidence            4789999999999986  3444  455669986 667788887 2233333332111   1112222  66666666542


Q ss_pred             HHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCc
Q 024619          129 LDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDV  208 (265)
Q Consensus       129 ~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~  208 (265)
                      -......+.+++++|++++++||||.+.|+++|.++   +|+++++|++|+.+....... +.|++++|+||++++++| 
T Consensus       155 g~~~~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~~---~~~~vivD~a~~~~~~~~~~~-~~di~~~s~sK~~~~~gg-  229 (398)
T 2fyf_A          155 GSAPEPQTDPSVDVIAWAHNETSTGVAVAVRRPEGS---DDALVVIDATSGAGGLPVDIA-ETDAYYFAPQKNFASDGG-  229 (398)
T ss_dssp             TCCCCCCCCTTCSEEEEESEETTTTEECCCCCCTTC---C-CEEEEECTTTTTTSCCCGG-GCSEEEECTTSTTCSCSS-
T ss_pred             CCCCCccccCCCCEEEEeCcCCCcceecchHHhhhh---cCCeEEEEeccccCCcccCcc-cCcEEEEecCcccCCCCc-
Confidence            111112356789999999999999999999888887   899999999999876543222 489999999999955434 


Q ss_pred             eeeEEEeechhHH
Q 024619          209 MAGVLAVKGERLA  221 (265)
Q Consensus       209 ~~G~v~~~~~~~~  221 (265)
                       .|+++.+++.+.
T Consensus       230 -~g~l~~~~~~~~  241 (398)
T 2fyf_A          230 -LWLAIMSPAALS  241 (398)
T ss_dssp             -EEEEEECHHHHH
T ss_pred             -eEEEEECHHHHH
Confidence             688888775543

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=99.58  E-value=5.7e-16  Score=138.85  Aligned_cols=191  Identities=16%  Similarity=0.155  Sum_probs=119.9

Q ss_pred             cceeEeeccCC--CCCCCCCCCCeeeccccccCCC-CCCCCCccCCCC-ChhHHHHHHHHHhHh--CCCceEEecchHHH
Q 024619            9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSA-TENGPYDYTRSG-NPTRDALESLLAKLD--KADRALCFTSGMAA   82 (265)
Q Consensus         9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~y~~~g-~~~~~~l~~~l~~~~--g~~~~i~~~~g~~a   82 (265)
                      .+.++|+|.++  ...+|..+|.+..+..-..... .... ..|+... ..+.+++++.++++.  +.+.+++++||++|
T Consensus        61 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~la~~l~~~~~~~~~~v~f~~sGseA  139 (472)
T 1ohv_A           61 DGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINR-PALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCS  139 (472)
T ss_dssp             TSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCC-CCTTTSCBTTHHHHHHHTGGGGCCTTCCEEEEESSHHHH
T ss_pred             CCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhcccccc-cccccccHHHHHHHHHHHHHHhCCCCcCEEEEeCCchhH
Confidence            35679999632  2347886666666543211100 0011 1222222 245777777787776  55678899999999


Q ss_pred             HH-HHHHhc--------C-----------------CC---CEEEEcCCCCCChHHHHHhhcCC-----CCeE-----EEe
Q 024619           83 LA-AVTHLL--------G-----------------TG---EEIVAGDDLYGGTDRLLSRVTPK-----TGVV-----VKR  123 (265)
Q Consensus        83 l~-~~~~~~--------~-----------------~g---~~viv~~~~~~~~~~~~~~~~~~-----~g~~-----~~~  123 (265)
                      +. ++..+.        .                 +|   ++|++.++.|+++..........     .+..     .+.
T Consensus       140 ~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~~~  219 (472)
T 1ohv_A          140 NENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAP  219 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCEEC
T ss_pred             HHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCCCcccC
Confidence            85 444432        1                 45   89999999999876543222211     1111     112


Q ss_pred             ecC-----------------CCHHHHHhhcCC------CceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeC
Q 024619          124 VNT-----------------CDLDEVASAIGP------WTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDN  176 (265)
Q Consensus       124 ~~~-----------------~d~~~l~~~~~~------~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~  176 (265)
                      ++.                 .|++++++++.+      ++++|++++.+|++|.+.+    +++|.++|++||+++|+||
T Consensus       220 ~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DE  299 (472)
T 1ohv_A          220 FPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDE  299 (472)
T ss_dssp             CCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeC
Confidence            211                 147788888865      7899999998899998876    9999999999999999999


Q ss_pred             CcC-CCCCcC---CCCCC----ccEEEecccccc
Q 024619          177 SIM-SPVLSR---PLELG----ADIVMHSATKFI  202 (265)
Q Consensus       177 ~~~-~~~~~~---~~~~~----~di~~~s~sK~~  202 (265)
                      +|. .+..+.   ....+    .|++  |+||++
T Consensus       300 v~~g~g~~g~~~~~~~~gv~~~~Di~--t~sK~~  331 (472)
T 1ohv_A          300 VQTGGGSTGKFWAHEHWGLDDPADVM--TFSKKM  331 (472)
T ss_dssp             TTTTTTTTSSSSGGGGGCCSSCCSEE--EECGGG
T ss_pred             cccCCCCCCCchhccccCCCCCCCEE--EEcccc
Confidence            997 333321   11123    6765  778983

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=99.57  E-value=6.9e-15  Score=127.66  Aligned_cols=153  Identities=16%  Similarity=0.126  Sum_probs=118.6

Q ss_pred             hHHHHHHHHHhHhCCC--ceEEe-c-chHHHHH-HHHHhcCC--CCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-
Q 024619           56 TRDALESLLAKLDKAD--RALCF-T-SGMAALA-AVTHLLGT--GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-  127 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~~i~~-~-~g~~al~-~~~~~~~~--g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-  127 (265)
                      ..++.++.+++++|++  +.+++ + +|+++++ ++..++.+  ||+|++....+.+.  .|...++..|.+++.++.+ 
T Consensus        59 ~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~~~~~Gd~v~~~~~g~~~~--~~~~~a~~~G~~~~~~~~~~  136 (377)
T 3e77_A           59 IINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGLKAGRCADYVVTGAWSA--KAAEEAKKFGTINIVHPKLG  136 (377)
T ss_dssp             HHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHGGGSTTCEEEECCCSHHHH--HHHHHHTTTSEEEECSCCCS
T ss_pred             HHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhccCCCCCCeEEEEECCHHHH--HHHHHHHHhCCceEEeccCC
Confidence            4788999999999986  33444 4 4568886 67777765  89988766655443  3557778889888877653 


Q ss_pred             ----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccc
Q 024619          128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA  203 (265)
Q Consensus       128 ----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~  203 (265)
                          ++++++.++++++++|.+++..|.||.+.|+     +|+++|+++++|.+++.|..+..... .+++++|.+||+ 
T Consensus       137 ~~~~~~~~~~~~i~~~t~lV~~~h~et~tG~~~pi-----i~~~~~~~~~vD~~q~~g~~~id~~~-~~~~~~s~~K~~-  209 (377)
T 3e77_A          137 SYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDF-----IPDVKGAVLVCDMSSNFLSKPVDVSK-FGVIFAGAQKNV-  209 (377)
T ss_dssp             SSCSCCCGGGCCCCTTCSCEEEESEETTTTEECSS-----CCCCTTCCEEEECTTTTTSSCCCGGG-CSEEEEEGGGTT-
T ss_pred             CcCCCCChHHhccCCCccEEEEeCccCchheEchh-----hhccCCCEEEEEcccccCCCCCchhh-cCEEEEeccccc-
Confidence                4667777788899999999999999999998     47789999999999999988633322 346889999999 


Q ss_pred             cCCCceeeEEEeechh
Q 024619          204 GHSDVMAGVLAVKGER  219 (265)
Q Consensus       204 g~~g~~~G~v~~~~~~  219 (265)
                      ||+|+  |+++.+++.
T Consensus       210 gp~G~--g~l~~~~~~  223 (377)
T 3e77_A          210 GSAGV--TVVIVRDDL  223 (377)
T ss_dssp             SCTTC--EEEEEETTS
T ss_pred             CCCcc--EEEEEcHHH
Confidence            79995  888888755

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=99.55  E-value=1.2e-14  Score=127.89  Aligned_cols=160  Identities=13%  Similarity=0.029  Sum_probs=117.7

Q ss_pred             HHHHHHHHHhHhCCCc---eEEecchH-HHHHHHHHhcCC----CCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-
Q 024619           57 RDALESLLAKLDKADR---ALCFTSGM-AALAAVTHLLGT----GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-  127 (265)
Q Consensus        57 ~~~l~~~l~~~~g~~~---~i~~~~g~-~al~~~~~~~~~----g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-  127 (265)
                      .+.+..++.+++|.++   .+++++++ .++.++++.+++    ++.|+++..+|.+..    ..+...|+++++++.. 
T Consensus       100 e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~----kAl~l~Gl~p~~v~~~~  175 (450)
T 3bc8_A          100 TNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCF----KSMVTAGFEPVVIENVL  175 (450)
T ss_dssp             HHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHH----HHHHHTTCEEEEECCEE
T ss_pred             HHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHH----HHHHHcCCeeEEEEeee
Confidence            5678888888888773   37777776 555555555443    899999999998886    5567789998888642 


Q ss_pred             -------CHHHHHhhcCC---CceE-EEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc------CCCC-C
Q 024619          128 -------DLDEVASAIGP---WTKL-VWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS------RPLE-L  189 (265)
Q Consensus       128 -------d~~~l~~~~~~---~~~~-i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~------~~~~-~  189 (265)
                             |++++++++.+   +..+ |+.+..++.+|.+.|+++|+++|++||+++++|++|+.....      .... .
T Consensus       176 ~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~~~a~~~~  255 (450)
T 3bc8_A          176 EGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVG  255 (450)
T ss_dssp             ETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHHS
T ss_pred             cCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhhhhhHhHHHHHhccc
Confidence                   89999999853   2344 444444455668899999999999999999999999854322      1112 2


Q ss_pred             CccEEEeccccccccCCCceeeEEEeechhHHH
Q 024619          190 GADIVMHSATKFIAGHSDVMAGVLAVKGERLAK  222 (265)
Q Consensus       190 ~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~  222 (265)
                      +.|+++.|+|||+.+|.+  ++++..++....+
T Consensus       256 ~AD~~v~S~HK~l~a~~~--~~~l~~rd~~~~~  286 (450)
T 3bc8_A          256 RIDAFVQSLDKNFMVPVG--GAIIAGFNEPFIQ  286 (450)
T ss_dssp             CCCEEEEEHHHHHSCCSS--CEEEEESCHHHHH
T ss_pred             CCCEEEECCccCCCchhc--cEEEEecCHHHHH
Confidence            689999999999988765  6777777655443

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=99.55  E-value=6.6e-15  Score=128.34  Aligned_cols=153  Identities=12%  Similarity=0.022  Sum_probs=116.7

Q ss_pred             hhHHHHHHHHHhHhCCC--c-eEEe-cchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC--
Q 024619           55 PTRDALESLLAKLDKAD--R-ALCF-TSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--  127 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~--~-~i~~-~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--  127 (265)
                      ...++.++.+++++|++  + ++++ .+|+++++ ++..++++||+|++..-++.+.  .|...++..| ++..++.+  
T Consensus        72 ~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~ai~~l~~~gd~v~~~~~~~~~~--~~~~~a~~~G-~v~~v~~~~~  148 (386)
T 3qm2_A           72 QVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAA--SAIKEAKKYC-APQIIDAKIT  148 (386)
T ss_dssp             -CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHHHHHHHHCTTCCEEEEEESSHHHH--HHHHHHTTTS-EEEEEECEEE
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhccCCCCeEEEEeCCHHHH--HHHHHHHHhC-CeEEEecCcc
Confidence            34788999999999986  2 4443 46679986 7788899999987544444333  3445667788 77777654  


Q ss_pred             ------CHHHHHhhcCCCceEEEEecCCCCcccc-ccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEecccc
Q 024619          128 ------DLDEVASAIGPWTKLVWVESPTNPRQQI-CDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATK  200 (265)
Q Consensus       128 ------d~~~l~~~~~~~~~~i~~~~~~np~G~~-~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK  200 (265)
                            +++++++++++++++|++++..|.||.+ .|+++|.     +|+++++|.+++.|..+..... .|+.++|.+|
T Consensus       149 ~~G~~~~~~~~~~~l~~~t~lV~~~h~et~tG~~i~pi~~i~-----~g~~~~vDa~qs~g~~pidv~~-~~~~~~s~hK  222 (386)
T 3qm2_A          149 VDGKRAVKPMREWQLSDNAAYLHYCPNETIDGIAIDETPDFG-----PEVVVTADFSSTILSAPLDVSR-YGVIYAGAQK  222 (386)
T ss_dssp             ETTEEEECCGGGCCCCTTCSCEEECSEETTTTEECCCCCCCC-----TTCCEEEECTTTTTSSCCCGGG-CSEEEEETTT
T ss_pred             cCCCCCCchHHHhhcCCCCcEEEEECCcCCcCEecCchhhhc-----CCCEEEEEcccccCCCCCCccc-cCEEEEeccc
Confidence                  4577788888999999999999999996 8898885     7999999999999988633322 2467799999


Q ss_pred             ccccCCCceeeEEEeechh
Q 024619          201 FIAGHSDVMAGVLAVKGER  219 (265)
Q Consensus       201 ~~~g~~g~~~G~v~~~~~~  219 (265)
                      |+ ||+|+  |+++.+++.
T Consensus       223 ~l-GP~G~--g~l~v~~~~  238 (386)
T 3qm2_A          223 NI-GPAGL--TLVIVREDL  238 (386)
T ss_dssp             TT-CCTTE--EEEEEEGGG
T ss_pred             cc-CCCcc--EEEEECHHH
Confidence            99 79995  888888765

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=99.52  E-value=3e-14  Score=124.47  Aligned_cols=154  Identities=10%  Similarity=0.038  Sum_probs=109.9

Q ss_pred             HHHHhHhCCC---ceEEecchH-HHHHHHHHhcCC----CCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC------
Q 024619           62 SLLAKLDKAD---RALCFTSGM-AALAAVTHLLGT----GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------  127 (265)
Q Consensus        62 ~~l~~~~g~~---~~i~~~~g~-~al~~~~~~~~~----g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------  127 (265)
                      ++++++ |..   ..+++++++ ..+.++++.+++    +|.|+++..+|-+..    ..+...|+++++++..      
T Consensus       124 d~L~~~-G~~~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~----kAliL~Gl~Pv~V~p~~d~~~~  198 (501)
T 3hl2_A          124 DIIKLA-GVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCF----KSMITAGFEPVVIENVLEGDEL  198 (501)
T ss_dssp             HHHHHT-TCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHH----HHHHHTTCEEEEECEEEETTEE
T ss_pred             HHHHHc-CCCCCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHH----HHHHHcCCeEEEEeeeeccccc
Confidence            334444 765   356666666 445666776664    499999999998887    5556789999998741      


Q ss_pred             --CHHHHHhhcCC---C-ceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc------CCCCCC-ccEE
Q 024619          128 --DLDEVASAIGP---W-TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS------RPLELG-ADIV  194 (265)
Q Consensus       128 --d~~~l~~~~~~---~-~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~------~~~~~~-~di~  194 (265)
                        |++++++++.+   + ..+|+.+.++|-.|.+.|+++|+++|++||+++++|++|+.-...      .....| .|++
T Consensus       199 ~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD~v  278 (501)
T 3hl2_A          199 RTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAF  278 (501)
T ss_dssp             EECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCCcEE
Confidence              78999988853   2 334444555554456689999999999999999999999865422      223446 9999


Q ss_pred             EeccccccccCCCceeeEEEeechhHHH
Q 024619          195 MHSATKFIAGHSDVMAGVLAVKGERLAK  222 (265)
Q Consensus       195 ~~s~sK~~~g~~g~~~G~v~~~~~~~~~  222 (265)
                      +.|.+|++..|-|  ++++..+++...+
T Consensus       279 VqS~HK~llvpIG--G~ii~~~d~e~l~  304 (501)
T 3hl2_A          279 VQSLDKNFMVPVG--GAIIAGFNDSFIQ  304 (501)
T ss_dssp             EEEHHHHHCCCSS--CEEEEESCHHHHH
T ss_pred             EecccccceeecC--ceEEEeCCHHHHH
Confidence            9999999987754  4566667765544

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=99.45  E-value=2.9e-13  Score=120.08  Aligned_cols=202  Identities=18%  Similarity=0.182  Sum_probs=135.5

Q ss_pred             CcceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHh-CCCceEEecchHHHHH
Q 024619            8 GVSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD-KADRALCFTSGMAALA   84 (265)
Q Consensus         8 ~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~-g~~~~i~~~~g~~al~   84 (265)
                      ..+.++|+|.+  +...+|...|.+..+..-+...     ...+.. .++...++++.+++.+ +.+.+.+++||++|..
T Consensus        84 ~dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~-----~~~~~~-~~~~~~~lae~l~~~~p~~~~v~f~~SGsEA~e  157 (454)
T 4ao9_A           84 ADGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQG-----GINLTG-HNLLEGRLARLICERFPQIEQLRFTNSGTEANL  157 (454)
T ss_dssp             TTCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHT-----CSCCCS-EESSHHHHHHHHHHHSTTCSEEEEESSHHHHHH
T ss_pred             CCCCEEEEccccHHhhcccCCCHHHHHHHHHHHhc-----CCCccC-CcHHHHHHHHHHHHhCCCCCEEEEeCchHHHHH
Confidence            34578899853  3555888887777765432221     111111 1234677888888887 4567888899999885


Q ss_pred             -HHHHh--cCCCCEEEEcCCCCCChHHHHHhh--cCCCCeEEEeecCCCHHHHHhhcC---CCceEEEEecCCCCccccc
Q 024619           85 -AVTHL--LGTGEEIVAGDDLYGGTDRLLSRV--TPKTGVVVKRVNTCDLDEVASAIG---PWTKLVWVESPTNPRQQIC  156 (265)
Q Consensus        85 -~~~~~--~~~g~~viv~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~d~~~l~~~~~---~~~~~i~~~~~~np~G~~~  156 (265)
                       ++...  ....++|+..+.+|+.........  ..........+|..|.+.+++.+.   +++++|+++......|.+.
T Consensus       158 ~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~nd~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~  237 (454)
T 4ao9_A          158 MALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYNDAQTARAQIERHGPEIAVVLVEPMQGASGCIP  237 (454)
T ss_dssp             HHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECTTCHHHHHHHHHHTGGGEEEEEECSEESTTTCEE
T ss_pred             HHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCCchHHHHHHHHhhcCCceEEEEeccccCCCCccC
Confidence             44332  234578888888888764211000  011223556677789998888875   4688999999988889887


Q ss_pred             c----HHHHHHHHHHcCCEEEEeCCcCCCCCcC-----CCCCCccEEEeccccccccCCCceeeEEEeechhH
Q 024619          157 D----IRKIAEMAHAHGALLLVDNSIMSPVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       157 ~----l~~i~~~a~~~~~~li~D~~~~~~~~~~-----~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                      +    +++|.++|++||+++|+||++. |..+.     .....+|++  +++|.++|  |+..|.+.++++.+
T Consensus       238 p~~~fL~~lr~lc~~~g~lLI~DEV~t-GR~G~~~a~e~~gv~PDi~--t~gK~lgg--G~Piga~~~~~ei~  305 (454)
T 4ao9_A          238 GQPDFLQALRESATQVGALLVFDEVMT-SRLAPHGLANKLGIRSDLT--TLGKYIGG--GMSFGAFGGRADVM  305 (454)
T ss_dssp             CCHHHHHHHHHHHHHHTCEEEEECTTG-GGGSTTCHHHHHTCCCSEE--EEEGGGGT--TSSCEEEEECHHHH
T ss_pred             CchhhHHHHHHHHhhcCCEEEEECCCc-CCCccccchhccCCCCcEE--EeccccCC--CCcceeeeeHHHHH
Confidence            6    8999999999999999999986 43321     123357887  46898854  45678887777544

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.41  E-value=3.4e-13  Score=116.51  Aligned_cols=148  Identities=14%  Similarity=0.084  Sum_probs=107.6

Q ss_pred             hHHHHHHHHHhHhCCC--ceEEe-cch-HHHHH-HHHHhcCCCCEEE-EcCCCCCChHHHHHhhcCCCCeEEEeecCC--
Q 024619           56 TRDALESLLAKLDKAD--RALCF-TSG-MAALA-AVTHLLGTGEEIV-AGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--  127 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~~i~~-~~g-~~al~-~~~~~~~~g~~vi-v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--  127 (265)
                      ..++.++.+++++|++  ..+++ ++| +++++ ++..++ +||++. +....| +  ..|...++..|+++..++.+  
T Consensus        51 ~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~~~~~-~~~~~~~i~~~~~-~--~~~~~~a~~~G~~v~~~~~~~~  126 (361)
T 3m5u_A           51 VHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNLA-LNGVCEYANTGVW-T--KKAIKEAQILGVNVKTVASSEE  126 (361)
T ss_dssp             HHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHC-CSSCEEEEECSHH-H--HHHHHHHHHTTCCEEEEEECTT
T ss_pred             HHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHHHHhcC-CCCeEEEEeCCHH-H--HHHHHHHHHcCCceEEEecccC
Confidence            4888999999999984  24444 555 58886 677777 788652 222222 2  22334556677777776532  


Q ss_pred             -----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEecccccc
Q 024619          128 -----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFI  202 (265)
Q Consensus       128 -----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~  202 (265)
                           ++++  + +++++++|.+++..|.+|.+.|.     +++ +|+++++|.+++.|..+.... +.|++++|.+||+
T Consensus       127 g~~~~~~~~--~-l~~~t~lv~~~~~e~~tG~~~~~-----i~~-~~~~~~vD~~q~~g~~~id~~-~~d~~~~s~~K~~  196 (361)
T 3m5u_A          127 SNFDHIPRV--E-FSDNADYAYICSNNTIYGTQYQN-----YPK-TKTPLIVDASSDFFSRKVDFS-NIALFYGGVQKNA  196 (361)
T ss_dssp             TTSCSCCCC--C-CCTTSSEEEEESEETTTTEECSS-----CCC-CSSCEEEECGGGTTSSCCCCT-TEEEEEEETTTTS
T ss_pred             cCCCcCChh--h-cCCCCCEEEEeCCCCCcceeCCc-----ccc-cCCEEEEEcccccCCCCCCcc-cCCEEEEechhcc
Confidence                 3444  4 78899999999999999998662     333 499999999999998874444 4799999999999


Q ss_pred             ccCCCceeeEEEeechhH
Q 024619          203 AGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       203 ~g~~g~~~G~v~~~~~~~  220 (265)
                       ||+|+  |+++.+++.+
T Consensus       197 -gp~G~--g~l~~~~~~~  211 (361)
T 3m5u_A          197 -GISGL--SCIFIRKDML  211 (361)
T ss_dssp             -SCTTC--EEEEEEHHHH
T ss_pred             -CCCcc--EEEEEcHHHH
Confidence             79995  8888887665

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=99.37  E-value=4.3e-12  Score=110.57  Aligned_cols=151  Identities=21%  Similarity=0.224  Sum_probs=103.4

Q ss_pred             HHHHhHhCCCc-----eEEecchHHHH-HHHHHhcCCCCEEEEcCCCCCChHHHHH----hhcCCCCeEEEee--cC---
Q 024619           62 SLLAKLDKADR-----ALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLS----RVTPKTGVVVKRV--NT---  126 (265)
Q Consensus        62 ~~l~~~~g~~~-----~i~~~~g~~al-~~~~~~~~~g~~viv~~~~~~~~~~~~~----~~~~~~g~~~~~~--~~---  126 (265)
                      ++.+++||++.     .+-..||++|. .+..++++|||+|+-.+..+.+......    .-....|.-...+  .+   
T Consensus       107 ~rak~lF~a~~A~w~VNVQP~SGs~AN~avy~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~  186 (490)
T 3ou5_A          107 RRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPK  186 (490)
T ss_dssp             HHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCC-CCCEECBC----------------------------CBCEETT
T ss_pred             HHHHHHhCCCccccCCCCCcCCHHHHHHHHHHHHcCCCCEEEecccCCCCcccccccCCCcccccccccccccccccCCC
Confidence            45678899984     47777999776 5889999999999988877665542210    0011122222222  11   


Q ss_pred             ---CCHHHHHhhcC-CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcC-----CCCCcCCCCCCccEEEec
Q 024619          127 ---CDLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIM-----SPVLSRPLELGADIVMHS  197 (265)
Q Consensus       127 ---~d~~~l~~~~~-~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~-----~~~~~~~~~~~~di~~~s  197 (265)
                         .|.+++++... .++++|+.-...+|  ...|.+++.++|++.|+++++|.+|-     .|.+++|... .|++++|
T Consensus       187 t~~IDyd~~~~~A~~~kPklIi~G~SaY~--r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~~-ADvVTtT  263 (490)
T 3ou5_A          187 TGLIDYNQLALTARLFRPRLIIAGTSAYA--RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKH-ADIVTTT  263 (490)
T ss_dssp             TTEECHHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGT-CSEEEEE
T ss_pred             CCcccHHHHHHHHhhcCCCeEEECCccCc--cccCHHHHHHHHhhcccEEEechhhhhhhhcccccCCcccc-ceEEecc
Confidence               27888888765 57999887665554  46799999999999999999999994     5666788877 8999999


Q ss_pred             cccccccCCCceeeEEEeech
Q 024619          198 ATKFIAGHSDVMAGVLAVKGE  218 (265)
Q Consensus       198 ~sK~~~g~~g~~~G~v~~~~~  218 (265)
                      .||+|.||.   +|+|.+++.
T Consensus       264 THKTLrGPr---GG~Il~~~~  281 (490)
T 3ou5_A          264 THKTLRGAR---SGLIFYRKG  281 (490)
T ss_dssp             SSSTTCSCS---CEEEEEECS
T ss_pred             ccccccCCC---ceEEEeccc
Confidence            999999986   699998863

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=99.19  E-value=2.8e-10  Score=101.13  Aligned_cols=233  Identities=17%  Similarity=0.188  Sum_probs=139.3

Q ss_pred             cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCC---CceEEecchHHHH
Q 024619            9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA---DRALCFTSGMAAL   83 (265)
Q Consensus         9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~---~~~i~~~~g~~al   83 (265)
                      .+.++|+|.+  +...+|...|.+..+..-+....   ....+....++...++.+.+.++...   +.+.+++||++|+
T Consensus        62 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~---~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~  138 (456)
T 4atq_A           62 DGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHF---THTCFMVTPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAV  138 (456)
T ss_dssp             TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHC---SCCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHH
T ss_pred             CCCEEEEccccHHHHhcCCCCHHHHHHHHHHHhhc---cCcccCccCcHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHH
Confidence            4567888854  35668988887777654322211   11111111224466788889888743   3577888999998


Q ss_pred             HHHHHh---cCCCCEEEEcCCCCCChHHHHHhhcCC----------CCeEEEeecCC-----------CHH-------HH
Q 024619           84 AAVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTPK----------TGVVVKRVNTC-----------DLD-------EV  132 (265)
Q Consensus        84 ~~~~~~---~~~g~~viv~~~~~~~~~~~~~~~~~~----------~g~~~~~~~~~-----------d~~-------~l  132 (265)
                      ...+.+   ....++|+....+|++...........          ....+..+|.+           +.+       .+
T Consensus       139 e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  218 (456)
T 4atq_A          139 ENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMI  218 (456)
T ss_dssp             HHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHH
Confidence            633332   334578888888888865332121111          11123333321           122       22


Q ss_pred             HhhcC-CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCC-CCCc-----CCCCCCccEEEeccccc
Q 024619          133 ASAIG-PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLS-----RPLELGADIVMHSATKF  201 (265)
Q Consensus       133 ~~~~~-~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~~-~~~~-----~~~~~~~di~~~s~sK~  201 (265)
                      ++.+. +++.+|+++..+...|.+.+    +++|.++|++||+++|+||++.. |..+     ......+||++.  +|.
T Consensus       219 e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv~PDivt~--gK~  296 (456)
T 4atq_A          219 EKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPDIITM--AKG  296 (456)
T ss_dssp             HHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEE--CGG
T ss_pred             HHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccccccccccCCCCchhhh--hhc
Confidence            23333 46889999999887887753    89999999999999999999853 3332     222345899854  798


Q ss_pred             cccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccCc
Q 024619          202 IAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT  249 (265)
Q Consensus       202 ~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  249 (265)
                      ++|  |+..|.++.+++.. +.+.......+..-+|..++..+..|+.
T Consensus       297 lgg--g~P~~av~~~~~i~-~~~~~~~~~~Tf~gnpla~aaala~L~~  341 (456)
T 4atq_A          297 IAG--GLPLSAITGRADLL-DAVHPGGLGGTYGGNPVACAAALAAIDT  341 (456)
T ss_dssp             GGT--TSSCEEEEEEHHHH-TTSCTTSSCCSSSSCHHHHHHHHHHHHH
T ss_pred             ccC--cCCceeeEecHHHH-hcccccCCCCCCCCChHHHHhhHHHHHH
Confidence            853  46788888877543 3222222233344456666665555543

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=99.10  E-value=1.8e-09  Score=96.27  Aligned_cols=205  Identities=14%  Similarity=0.095  Sum_probs=126.6

Q ss_pred             CcceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-C--ChhHHHHHHHHHhHhCC--CceEEecchH
Q 024619            8 GVSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-G--NPTRDALESLLAKLDKA--DRALCFTSGM   80 (265)
Q Consensus         8 ~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g--~~~~~~l~~~l~~~~g~--~~~i~~~~g~   80 (265)
                      ..+.++|+|.+  ++..+|...|.+..+..-+....     ..|... +  ++...++.++|.++...  +.+.+.+||+
T Consensus        64 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l-----~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGs  138 (473)
T 4e3q_A           64 VNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERF-----PGYHAFFGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGS  138 (473)
T ss_dssp             TTCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHC-----CCCCCCTTEEEHHHHHHHHHHHHHSSCSSCEEEEESSHH
T ss_pred             CCCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhc-----ccccccccccCHHHHHHHHHHHhhCCCCccEEEEeCchH
Confidence            34578899854  35558888877776654322211     112222 2  24467788999988753  4688889999


Q ss_pred             HHHHHHHHhc--------CC-CCEEEEcCCCCCChHHHHHhhcC----------CCCeEEEeecC--------CC-----
Q 024619           81 AALAAVTHLL--------GT-GEEIVAGDDLYGGTDRLLSRVTP----------KTGVVVKRVNT--------CD-----  128 (265)
Q Consensus        81 ~al~~~~~~~--------~~-g~~viv~~~~~~~~~~~~~~~~~----------~~g~~~~~~~~--------~d-----  128 (265)
                      +|+...+.+.        ++ ..+|+....+|++..........          ..+...+..|.        ..     
T Consensus       139 EA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  218 (473)
T 4e3q_A          139 EANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFV  218 (473)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchhhHHH
Confidence            9986333321        23 35688888888875432211111          11222222221        01     


Q ss_pred             ---HHHHHhhc----CCCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CCCCCc
Q 024619          129 ---LDEVASAI----GPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGA  191 (265)
Q Consensus       129 ---~~~l~~~~----~~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~~~~~  191 (265)
                         .+++++.+    .+++++|+++....-.|.+.+    +++|.++|++||+++|.||++. .|-.+.     .....+
T Consensus       219 ~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~P  298 (473)
T 4e3q_A          219 ARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTP  298 (473)
T ss_dssp             HHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTCCC
T ss_pred             HHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccchhHHHhcCCCC
Confidence               22333333    246889999999887787743    8999999999999999999985 333332     223458


Q ss_pred             cEEEeccccccccCCCceeeEEEeechhH
Q 024619          192 DIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       192 di~~~s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                      |+++  ++|.+++ +.+..|.++++++..
T Consensus       299 Di~t--~~K~l~g-G~~Pl~av~~~~~i~  324 (473)
T 4e3q_A          299 DAII--SSKNLTA-GFFPMGAVILGPELS  324 (473)
T ss_dssp             SEEE--ECGGGGT-TSSCCEEEEECHHHH
T ss_pred             ChHH--hcccccC-CCCCcccccccHHHH
Confidence            9885  5899843 446688888877544

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=99.04  E-value=2.7e-10  Score=108.21  Aligned_cols=202  Identities=12%  Similarity=0.039  Sum_probs=125.1

Q ss_pred             eEeeccC--CCCCCCCC-CCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhC---CCceEEecchHHHHH-
Q 024619           12 LLMNFSN--EFDPYGAL-STPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK---ADRALCFTSGMAALA-   84 (265)
Q Consensus        12 ~~~~~~~--~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g---~~~~i~~~~g~~al~-   84 (265)
                      ++++|.+  ++..+|.. .|.+..+...+....   ....+....++...+++++|+++.+   .+.+++++||++|+. 
T Consensus       381 ~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~l---~h~~~~~~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~  457 (831)
T 4a0g_A          381 QQFDACASWWTQGPDPTFQAELAREMGYTAARF---GHVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEI  457 (831)
T ss_dssp             EEEETTHHHHTCCCCHHHHHHHHHHHHHHHHHH---SSCCCTTEECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHH
T ss_pred             heeeecccHhhcCCCCCCCHHHHHHHHHHHhhc---ccccccccCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHH
Confidence            7888853  47889998 666666654332211   1111111234567799999999986   356888999999985 


Q ss_pred             HHHHhc-----CC------------CCEEEEcCCCCCChHHHHHhhcCCC------------CeE---------------
Q 024619           85 AVTHLL-----GT------------GEEIVAGDDLYGGTDRLLSRVTPKT------------GVV---------------  120 (265)
Q Consensus        85 ~~~~~~-----~~------------g~~viv~~~~~~~~~~~~~~~~~~~------------g~~---------------  120 (265)
                      ++....     +.            ..+||....+|++.....-.+....            +..               
T Consensus       458 AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  537 (831)
T 4a0g_A          458 ALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSW  537 (831)
T ss_dssp             HHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEE
T ss_pred             HHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCceeeeeccCccccccccccccccCCccccCCccccccCCce
Confidence            332221     11            2368888888876543322222110            100               


Q ss_pred             EEeecC------------CC------------------HHHHHhhcC--------CCceEEEEecC-CCCcccccc----
Q 024619          121 VKRVNT------------CD------------------LDEVASAIG--------PWTKLVWVESP-TNPRQQICD----  157 (265)
Q Consensus       121 ~~~~~~------------~d------------------~~~l~~~~~--------~~~~~i~~~~~-~np~G~~~~----  157 (265)
                      .+.+|.            .+                  .+.+++.+.        +++++|+++.. ++..|.+.+    
T Consensus       538 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~  617 (831)
T 4a0g_A          538 NISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLF  617 (831)
T ss_dssp             EEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSEEECHHH
T ss_pred             EecCCccccccccccccccchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHH
Confidence            111110            11                  145666653        35789999986 888887754    


Q ss_pred             HHHHHHHHHHcCCEEEEeCCcC-CCCCcCC-----CCCCccEEEeccccccccCCCceeeEEEeechh
Q 024619          158 IRKIAEMAHAHGALLLVDNSIM-SPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGER  219 (265)
Q Consensus       158 l~~i~~~a~~~~~~li~D~~~~-~~~~~~~-----~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~  219 (265)
                      +++|.++|++||+++|+||++. .|..+..     .....|++  +++|.++| +.+..|+++++++.
T Consensus       618 L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDii--tlsK~L~g-G~~Plgav~~~~~i  682 (831)
T 4a0g_A          618 QRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIA--CFAKLLTG-GMVPLAVTLATDAV  682 (831)
T ss_dssp             HHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSCCSEE--EECGGGGT-TSSCCEEEEECHHH
T ss_pred             HHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCCCCcEE--EEeccccc-CccCcEEEEECHHH
Confidence            8999999999999999999985 3333321     12356876  58999954 22678999887754

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=88.75  E-value=2  Score=29.21  Aligned_cols=90  Identities=22%  Similarity=0.199  Sum_probs=57.4

Q ss_pred             ceEEecchHHHHHHHHHhcCCC-CEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCC
Q 024619           72 RALCFTSGMAALAAVTHLLGTG-EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTN  150 (265)
Q Consensus        72 ~~i~~~~g~~al~~~~~~~~~g-~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~n  150 (265)
                      .++++..|..+..++..+.+.| ..|++.+..-    ...... ...+.+....+..+.+.+.+.+. +..+|+.+.+..
T Consensus         7 ~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~----~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~-~~d~vi~~~~~~   80 (118)
T 3ic5_A            7 NICVVGAGKIGQMIAALLKTSSNYSVTVADHDL----AALAVL-NRMGVATKQVDAKDEAGLAKALG-GFDAVISAAPFF   80 (118)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH----HHHHHH-HTTTCEEEECCTTCHHHHHHHTT-TCSEEEECSCGG
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH----HHHHHH-HhCCCcEEEecCCCHHHHHHHHc-CCCEEEECCCch
Confidence            3556666666666666666667 6666544421    111122 25678888888889898888775 566776655422


Q ss_pred             CccccccHHHHHHHHHHcCCEEE
Q 024619          151 PRQQICDIRKIAEMAHAHGALLL  173 (265)
Q Consensus       151 p~G~~~~l~~i~~~a~~~~~~li  173 (265)
                            ....+.+.|.+.|+..+
T Consensus        81 ------~~~~~~~~~~~~g~~~~   97 (118)
T 3ic5_A           81 ------LTPIIAKAAKAAGAHYF   97 (118)
T ss_dssp             ------GHHHHHHHHHHTTCEEE
T ss_pred             ------hhHHHHHHHHHhCCCEE
Confidence                  23778888999888754

>2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A {Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB: 1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A 4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A* 2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ...

Probab=81.68  E-value=3.1  Score=36.30  Aligned_cols=93  Identities=14%  Similarity=0.050  Sum_probs=67.4

Q ss_pred             HHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC--CCHHHHHhhcCCCceEEEEecCCCCccccccH
Q 024619           81 AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT--CDLDEVASAIGPWTKLVWVESPTNPRQQICDI  158 (265)
Q Consensus        81 ~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l  158 (265)
                      +++..+..++++-+.+.+++|..+.-...|..+.+...+++.-=+.  .+++++++.+..+..=++..-+ |..|.+.+.
T Consensus       277 eai~~~~~~l~~y~i~~iEdPl~~dD~~g~~~l~~~~~ipI~gDE~~vt~~~~~~~~i~~~a~d~i~ikv-~qiGGitea  355 (436)
T 2al1_A          277 QLADLYHSLMKRYPIVSIEDPFAEDDWEAWSHFFKTAGIQIVADDLTVTNPKRIATAIEKKAADALLLKV-NQIGTLSES  355 (436)
T ss_dssp             HHHHHHHHHHHHSCEEEEECCSCTTCHHHHHHHHTTCCSEEEESTTTTTCHHHHHHHHHTTCCSEEEECH-HHHCCHHHH
T ss_pred             HHHHHHHHHHHhCCcEEEECCCCCcCHHHHHHHHhcCCCeEEECCcccCCHHHHHHHHHhCCCCEEEech-hhcCCHHHH
Confidence            4444556666666788899998877777777777776676654443  3789999988765443333334 557999999


Q ss_pred             HHHHHHHHHcCCEEEE
Q 024619          159 RKIAEMAHAHGALLLV  174 (265)
Q Consensus       159 ~~i~~~a~~~~~~li~  174 (265)
                      .+++++|+++|+.+++
T Consensus       356 ~~ia~lA~~~g~~~~~  371 (436)
T 2al1_A          356 IKAAQDSFAAGWGVMV  371 (436)
T ss_dssp             HHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHcCCeEEE
Confidence            9999999999997755

>3qtp_A Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Entamoeba histolytica}

Probab=80.03  E-value=3.4  Score=35.97  Aligned_cols=94  Identities=12%  Similarity=-0.013  Sum_probs=67.2

Q ss_pred             HHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC-eEEEeecC--CCHHHHHhhcCCCceEEEEecCCCCccccc
Q 024619           80 MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG-VVVKRVNT--CDLDEVASAIGPWTKLVWVESPTNPRQQIC  156 (265)
Q Consensus        80 ~~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g-~~~~~~~~--~d~~~l~~~~~~~~~~i~~~~~~np~G~~~  156 (265)
                      .+++.....++++-..+.+++|....-...|..+.+..+ ++++-=+.  .+++.+++.+..+..=+++.-+ |-.|.+.
T Consensus       282 ~elid~y~~lle~ypI~~IEDPl~~dD~eg~a~Lt~~lg~i~IvGDEl~vTn~~~i~~~Ie~~a~n~IlIKv-nqiGGIT  360 (441)
T 3qtp_A          282 DGLIAEYVDYGKHYPIASIEDPFAEDDWAAWNKFTVEHGNFQIVGDDLLVTNPARVQMAMDKNACNSVLIKV-NQIGTLT  360 (441)
T ss_dssp             HHHHHHHHHHHHHSCEEEEESCSCTTCHHHHHHHHHHTTTSEEEESTTTTTCHHHHHHHHHHTCCSEEEECG-GGTCCHH
T ss_pred             HHHHHHHHHHhhhcceeeecCCCChHHHHHHHHHHHhcCCceEEeccccccCHHHHHHHHHcCCCCEEEecc-cccccHH
Confidence            355566677777667888999988777777777766666 65544333  4789999888755433333334 4578999


Q ss_pred             cHHHHHHHHHHcCCEEEE
Q 024619          157 DIRKIAEMAHAHGALLLV  174 (265)
Q Consensus       157 ~l~~i~~~a~~~~~~li~  174 (265)
                      +..+++++|+++|..+++
T Consensus       361 Ealkaa~lA~~~G~~vmv  378 (441)
T 3qtp_A          361 ETFKTIKMAQEKGWGVMA  378 (441)
T ss_dssp             HHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHcCCeEEE
Confidence            999999999999998765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	265
d1ibja_	380	c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale	1e-69
d1y4ia1	397	c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Ci	2e-60
d1gc0a_	392	c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudom	4e-60
d1n8pa_	393	c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Ba	7e-60
d1cs1a_	384	c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {E	5e-51
d2ctza1	421	c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydry	2e-47
d1e5ea_	394	c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichom	3e-45
d1qgna_	398	c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {C	4e-43
d1pffa_	331	c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichom	3e-40
d1cl1a_	391	c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Esche	7e-32
d2aeua1	366	c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Ar	4e-21
d1p3wa_	391	c.67.1.3 (A:) Cysteine desulfurase IscS {Escherich	1e-10
d1c7ga_	456	c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbi	9e-10
d2z67a1	434	c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (	3e-08
d1c4ka2	462	c.67.1.5 (A:108-569) Ornithine decarboxylase major	9e-08
d1b5pa_	382	c.67.1.1 (A:) Aspartate aminotransferase, AAT {The	9e-08
d2v1pa1	467	c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop	1e-07
d3bc8a1	445	c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase	2e-07
d2e7ja1	364	c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (	2e-07
d1gdea_	388	c.67.1.1 (A:) Aromatic aminoacid aminotransferase,	1e-06
d1ax4a_	465	c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas	2e-06
d1mdoa_	376	c.67.1.4 (A:) Aminotransferase ArnB {Salmonella ty	5e-06
d1jf9a_	405	c.67.1.3 (A:) NifS-like protein/selenocysteine lya	2e-05
d2hoxa1	425	c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativ	9e-05
d1m6sa_	343	c.67.1.1 (A:) Low-specificity threonine aldolase {	1e-04
d1bs0a_	383	c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-a	3e-04
d1j32a_	388	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho	3e-04
d1v2da_	368	c.67.1.1 (A:) Glutamine aminotransferase {Thermus	0.001

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 380

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  217 bits (552), Expect = 1e-69
 Identities = 216/251 (86%), Positives = 237/251 (94%)

Query: 8   GVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKL 67
            VSTLL+N  N+FDP+ A+STPLYQTATFKQPSA ENGPYDYTRSGNPTRDALESLLAKL
Sbjct: 2   SVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLAKL 61

Query: 68  DKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC 127
           DKADRA CFTSGMAAL+AVTHL+  GEEIVAGDD+YGG+DRLLS+V P++GVVVKRVNT 
Sbjct: 62  DKADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT 121

Query: 128 DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPL 187
            LDEVA+AIGP TKLVW+ESPTNPRQQI DIRKI+EMAHA GAL+LVDNSIMSPVLSRPL
Sbjct: 122 KLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPL 181

Query: 188 ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV 247
           ELGADIVMHSATKFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDCW+CLRG+
Sbjct: 182 ELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGI 241

Query: 248 KTMALRVEKQQ 258
           KTMALR+EKQQ
Sbjct: 242 KTMALRIEKQQ 252

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} Length = 397

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

 Score =  194 bits (493), Expect = 2e-60
 Identities = 108/262 (41%), Positives = 160/262 (61%), Gaps = 11/262 (4%)

Query: 8   GVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSA--------TENGPYDYTRSGNPTRD 58
           G +T +++   + DP  GALSTP++QT+TF   SA         E   Y YTR GNPT D
Sbjct: 7   GFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTD 66

Query: 59  ALESLLAKLDKADRALCFTSGMAALAAVTH-LLGTGEEIVAGDDLYGGTDRLLSRVTPKT 117
           ALE  LA L++ +  L   SG++A+      L   G+ IV+   +YG T   LS   PK 
Sbjct: 67  ALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKF 126

Query: 118 GVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS 177
           G+ V+ V+    +E+ +A+ P TK+V++E+P NP   + DI  +A +AH  GALL+VDN+
Sbjct: 127 GINVRFVDAGKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNT 186

Query: 178 IMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE-LYFLQNAEGSGLA 236
            MSP   +PL+LGADIV+HS TK+I GH DV+ G++  K E + +     L++  G  ++
Sbjct: 187 FMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMS 246

Query: 237 PFDCWICLRGVKTMALRVEKQQ 258
           PF+ W+ LRGVKT+ +R+E+  
Sbjct: 247 PFNAWLTLRGVKTLGIRMERHC 268

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} Length = 392

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

 Score =  193 bits (490), Expect = 4e-60
 Identities = 94/263 (35%), Positives = 154/263 (58%), Gaps = 11/263 (4%)

Query: 7   PGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSA--------TENGPYDYTRSGNPTR 57
           PG +T  ++   +     GAL  P+YQTATF  P+          E   + Y+R  NPT 
Sbjct: 2   PGFATRAIHHGYDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTL 61

Query: 58  DALESLLAKLDKADRALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPK 116
           + LE+ +A L+  +  L   SGM A+ + +  LL  G+E++ G+ LYG T   L     +
Sbjct: 62  NLLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGE 121

Query: 117 TGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDN 176
            GV ++ V+  DL  + +A+ P T++++ ESP NP   + DI  +A++A  HGA ++VDN
Sbjct: 122 FGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDN 181

Query: 177 SIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY-FLQNAEGSGL 235
           +  +P L RPLELGAD+V+HSATK+++GH D+ AG++      + +     L++  G+ L
Sbjct: 182 TYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVL 241

Query: 236 APFDCWICLRGVKTMALRVEKQQ 258
           +P D  + +RG+KT+ LR+++  
Sbjct: 242 SPHDAALLMRGIKTLNLRMDRHC 264

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  192 bits (488), Expect = 7e-60
 Identities = 101/262 (38%), Positives = 148/262 (56%), Gaps = 6/262 (2%)

Query: 2   SVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATE-NGPYDYTRSGNPTRDAL 60
           +++E    +T  ++     D +G++  P+  + TFKQ S     G Y+Y+RS NP R+ L
Sbjct: 1   TLQESDKFATKAIHAGEHVDVHGSVIEPISLSTTFKQSSPANPIGTYEYSRSQNPNRENL 60

Query: 61  ESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
           E  +A L+ A   L F+SG A  A +   L  G   V+  D+YG               V
Sbjct: 61  ERAVAALENAQYGLAFSSGSATTATILQSLPQGSHAVSIGDVYG-GTHRYFTKVANAHGV 119

Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH----GALLLVDN 176
                   L+++   I   TKLVW+E+PTNP  ++ DI+K+A++   H      +L+VDN
Sbjct: 120 ETSFTNDLLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDN 179

Query: 177 SIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA 236
           + +SP +S PL  GADIV+HSATK+I GHSDV+ GVLA   + L + L FLQNA G+  +
Sbjct: 180 TFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPS 239

Query: 237 PFDCWICLRGVKTMALRVEKQQ 258
           PFD W+  RG+KT+ LRV +  
Sbjct: 240 PFDAWLTHRGLKTLHLRVRQAA 261

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} Length = 384

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

 Score =  169 bits (428), Expect = 5e-51
 Identities = 92/251 (36%), Positives = 143/251 (56%), Gaps = 2/251 (0%)

Query: 10  STLLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD 68
           +T+ +      D  YG +  P++ ++T+      E   +DY+R GNPTRD ++  LA+L+
Sbjct: 4   ATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNEPRAHDYSRRGNPTRDVVQRALAELE 63

Query: 69  KADRALCFTSGMAALAAVTHLLGTGEE-IVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC 127
               A+   +GM+A+  VT +     + +VA  D YGG+ RL   +  +    V  V+  
Sbjct: 64  GGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQG 123

Query: 128 DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPL 187
           D   + +A+    KLV VESP+NP  ++ DI KI  +A   GA+ +VDN+ +SP L  PL
Sbjct: 124 DEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPL 183

Query: 188 ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV 247
            LGAD+V+HS TK++ GHSDV+AGV+  K   +  EL +  N  G     FD ++ LRG+
Sbjct: 184 ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGL 243

Query: 248 KTMALRVEKQQ 258
           +T+  R+E  Q
Sbjct: 244 RTLVPRMELAQ 254

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} Length = 421

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

 Score =  161 bits (407), Expect = 2e-47
 Identities = 84/292 (28%), Positives = 119/292 (40%), Gaps = 43/292 (14%)

Query: 10  STLLMNFSNEFDP-YGALSTPLYQTATFKQPSA--------TENGPYDYTRSGNPTRDAL 60
            TL ++   E +P   +   P+Y T ++   S          +     Y+R  NPT D L
Sbjct: 4   ETLQLHAGYEPEPTTLSRQVPIYPTTSYVFKSPEHAANLFALKEFGNIYSRIMNPTVDVL 63

Query: 61  ESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEE-IVAGDDLYGGTDRLLSRV-TPKTG 118
           E  LA L+    AL   SG AA       L    + IV+  +LYGGT             
Sbjct: 64  EKRLAALEGGKAALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGI 123

Query: 119 VVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSI 178
            V         +E  +     T+  WVES  NP   I D+  +A+ A   G  L+VDN+ 
Sbjct: 124 EVRFTSREERPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTF 183

Query: 179 -MSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK--------------- 222
            M   L RPL  GA +V HS TK++ GH  V+AG +   G    +               
Sbjct: 184 GMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYH 243

Query: 223 ---------ELYFLQNAE-------GSGLAPFDCWICLRGVKTMALRVEKQQ 258
                    EL F+  A        G  L PF+ W+ L G++T++LR E+  
Sbjct: 244 GLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHV 295

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} Length = 394

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

 Score =  154 bits (390), Expect = 3e-45
 Identities = 88/260 (33%), Positives = 147/260 (56%), Gaps = 11/260 (4%)

Query: 10  STLLMNFSNEFDPYGALSTPLYQTATFKQPSA--------TENGPYDYTRSGNPTRDALE 61
           +T  ++ + + D +GA   P+YQT+TF   +          +   Y YTR GNPT   LE
Sbjct: 6   ATACIHANPQKDQFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNLE 65

Query: 62  SLLAKLDKADRALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
             +A L+K +  +  +SGM A+AA V  +L  G+ +++ + LYG T  L      K G+ 
Sbjct: 66  GKIAFLEKTEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQ 125

Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD-IRKIAEMAHAHGALLLVDNSIM 179
           V  +NT    EV   + P TK+V+ E+P NP  +I D  R   +     G L++ DN+  
Sbjct: 126 VDFINTAIPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFC 185

Query: 180 SPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY-FLQNAEGSGLAPF 238
           SP+++ P++ G D+V+HSATK+I GH+DV+AG++  K + L +     +++  GS ++P 
Sbjct: 186 SPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPH 245

Query: 239 DCWICLRGVKTMALRVEKQQ 258
           D W+  RG+ T+ +R++ + 
Sbjct: 246 DAWLITRGLSTLNIRMKAES 265

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 398

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score =  148 bits (375), Expect = 4e-43
 Identities = 70/246 (28%), Positives = 113/246 (45%), Gaps = 11/246 (4%)

Query: 23  YGALSTPLYQTATFKQPSATE--------NGPYDYTRSGNPTRDALESLLAKLDKADRAL 74
             A++TP+  T+ +     +E           ++Y R GNPT   LE  ++ L+ A+  L
Sbjct: 27  TDAITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEGAESTL 86

Query: 75  CFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVAS 134
              SGM A   +   L      +          R+          +   V          
Sbjct: 87  LMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGALE 146

Query: 135 AIGPW--TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGAD 192
                    L + ESPTNP  +  DI  ++++ H  GAL+ +D +  +P+  + L LGAD
Sbjct: 147 LALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGAD 206

Query: 193 IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL 252
           +V+HSATKF+ GH+DV+AG       +L  E+  L +  G  L P   ++ +RG+KT+ L
Sbjct: 207 LVLHSATKFLGGHNDVLAGC-ISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTLHL 265

Query: 253 RVEKQQ 258
           RV++Q 
Sbjct: 266 RVQQQN 271

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} Length = 331

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

 Score =  139 bits (352), Expect = 3e-40
 Identities = 70/203 (34%), Positives = 116/203 (57%), Gaps = 3/203 (1%)

Query: 59  ALESLLAKLDKADRALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT 117
           ALE  +AKL+ A+      SGM A+ A+V   L  G+ +++ D LYG T  L      K 
Sbjct: 2   ALEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKF 61

Query: 118 GVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNP-RQQICDIRKIAEMAHAHGALLLVDN 176
           GV V  ++      +   + P T++V+ E+P NP  + I     + +       L++VDN
Sbjct: 62  GVEVDFIDMAVPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDN 121

Query: 177 SIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE-LYFLQNAEGSGL 235
           +  SP+L+ PL+LG DIV+HSATK+I GH+DV+AG++  + + +AK     +++  G+ +
Sbjct: 122 TFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAII 181

Query: 236 APFDCWICLRGVKTMALRVEKQQ 258
           +P D W+  RG  T+ +RV++  
Sbjct: 182 SPHDAWLITRGTLTLDMRVKRAA 204

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} Length = 391

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

 Score =  118 bits (297), Expect = 7e-32
 Identities = 56/262 (21%), Positives = 112/262 (42%), Gaps = 14/262 (5%)

Query: 10  STLLMNFSNEFDP-YGALSTPLYQTATFKQPSA---------TENGPYDYTRSGNPTRDA 59
            T L+N         GA+++ + + ++    S            NG   Y R G  T  +
Sbjct: 3   DTQLVNAGRSKKYTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFS 62

Query: 60  LESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG 118
           L+  + +L+     + F  G AA+A ++   +  G+ ++  +  Y  +    S++  K G
Sbjct: 63  LQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLG 122

Query: 119 VVVKRVNTCDLDEVASAIGPWTKLVWVESPTNP--RQQICDIRKIAEMAHAHGALLLVDN 176
           V     +     ++   + P TK+V++ESP +             A  +    A++++DN
Sbjct: 123 VTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDN 182

Query: 177 SIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA 236
           +  + VL + L+ G D+ + +ATK++ GHSD M G          +         G  + 
Sbjct: 183 TWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLREN-AYLMGQMVD 241

Query: 237 PFDCWICLRGVKTMALRVEKQQ 258
               +I  RG++T+ +R+ +  
Sbjct: 242 ADTAYITSRGLRTLGVRLRQHH 263

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 366

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 88.8 bits (219), Expect = 4e-21
 Identities = 42/220 (19%), Positives = 78/220 (35%), Gaps = 19/220 (8%)

Query: 49  YTRSGNPTRDALESLLAKL--DKADRALCFTSGMAA-LAAVTHLLGTGEEIVAGDDLYGG 105
           Y  S        E  L  L  D+ D+ + F    +A LA +  L          +     
Sbjct: 45  YIGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALKPKKVIHYLPELPGHP 104

Query: 106 TDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQ-QICDIRKIAEM 164
           +   + R         K   +  + E+ + I   T ++   S  + +  ++ + +K+   
Sbjct: 105 S---IERSCKIVNA--KYFESDKVGEILNKIDKDTLVIITGSTMDLKVIELENFKKVINT 159

Query: 165 AHAHGALLLVDNSIMSPVL-----SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER 219
           A    A++ VD++  + V         L+LGAD+V+ S  K + G    +        + 
Sbjct: 160 AKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPRGGL----LAGKKE 215

Query: 220 LAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL-RVEKQQ 258
           L  ++Y      G    P       R +K   L R+ K  
Sbjct: 216 LVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAF 255

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} Length = 391

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

 Score = 58.8 bits (141), Expect = 1e-10
 Identities = 42/186 (22%), Positives = 68/186 (36%), Gaps = 20/186 (10%)

Query: 51  RSGNPTRDALE---SLLAKLDKADRA-LCFTSG------MAALAAVTHLLGTGEEIVAGD 100
           R G    +A++   + +A L  AD   + FTSG      +A   A       G+ I+   
Sbjct: 41  RFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSK 100

Query: 101 DLYGGTDRLLSRVTPKTGVVVKRVN-----TCDLDEVASAIGPWTKLVWVESPTNPRQQI 155
             +        ++  + G  V  +        DL E+ +A+   T LV +    N    +
Sbjct: 101 TEHKAVLDTCRQL-EREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVV 159

Query: 156 CDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLA 214
            DI  I EM  A G +  VD +     L     +L  D++  S  K          G L 
Sbjct: 160 QDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPK---GIGALY 216

Query: 215 VKGERL 220
           V+ +  
Sbjct: 217 VRRKPR 222

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} Length = 456

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

 Score = 56.3 bits (135), Expect = 9e-10
 Identities = 33/225 (14%), Positives = 66/225 (29%), Gaps = 42/225 (18%)

Query: 37  KQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEI 96
           KQ +    G   Y  +G+     LE  + +L      +    G  A   ++ L     + 
Sbjct: 59  KQWAGMMIGDEAY--AGSENFYHLEKTVKELFGFKHIVPTHQGRGAENLLSQLAIKPGQY 116

Query: 97  VAGDDLYGGTD-----------RLLSRVTPKTGVVVKRVNTCDLDEVASAIGP----WTK 141
           VAG+  +  T             ++        + +      DL+++A+ I         
Sbjct: 117 VAGNMYFTTTRFHQEKNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIA 176

Query: 142 LVWVESPTNPRQQIC----DIRKIAEMAHAHGALLLVDNSIMS----------------- 180
            + +    N          ++R + EMA  +G  +  D +                    
Sbjct: 177 YICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVS 236

Query: 181 -PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL 224
              +   +   AD    S  K    +   + G L +  E +    
Sbjct: 237 IKDIVHEMFSYADGCTMSGKKDCLVN---IGGFLCMNDEEMFSAA 278

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

 Score = 51.5 bits (122), Expect = 3e-08
 Identities = 19/147 (12%), Positives = 48/147 (32%), Gaps = 13/147 (8%)

Query: 125 NTCDLDEVASAIGPWTKL-----VWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIM 179
               ++++ +AI    +L     V       P +   DI +IA++   +    +++ +  
Sbjct: 192 VYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYA 251

Query: 180 SPV------LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS 233
                    L +  +   D V+ S+ K +     +  G++        KE+        S
Sbjct: 252 IQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTP--IGGGLVYSTDAEFIKEISLSYPGRAS 309

Query: 234 GLAPFDCWICLRGVKTMALRVEKQQVC 260
                +  + L  + +       +   
Sbjct: 310 ATPVVNTLVSLLSMGSKNYLELVKNQK 336

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} Length = 462

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

 Score = 50.0 bits (118), Expect = 9e-08
 Identities = 31/243 (12%), Positives = 61/243 (25%), Gaps = 39/243 (16%)

Query: 21  DPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGM 80
            P G      +    F+      +              A E   A++  AD+      G 
Sbjct: 32  HPAGREFYDFFGETVFRADLCNADVALGDLLIHEGPAVAAEKHAARVYNADKTYFVLGGS 91

Query: 81  AA--LAAVTHLLGTGEEIVAGDDLYGGTD---RLLSRVTPKTGVV-------VKRVNTCD 128
           +       + L+  G+ ++   + +         ++   P            +  +   D
Sbjct: 92  SNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRNPYGFIGGIYDSD 151

Query: 129 LDE-----------VASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVD-- 175
            DE              A       + V         I +  ++ +        +  D  
Sbjct: 152 FDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSA 211

Query: 176 ------------NSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 223
                       NS    +     E    IV+ S  K  AG S      +  K   +  +
Sbjct: 212 WVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFS--QTSQIHKKDSHIKGQ 269

Query: 224 LYF 226
           L +
Sbjct: 270 LRY 272

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

 Score = 50.1 bits (119), Expect = 9e-08
 Identities = 30/165 (18%), Positives = 57/165 (34%), Gaps = 23/165 (13%)

Query: 75  CFTSGMAALAAVTH-LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVV---KRVNTCDLD 130
               G  AL  +   +L  G+E++     +     ++         V    +     D +
Sbjct: 96  VTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPE 155

Query: 131 EVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS--- 184
            V  AI P TK + V SP NP   +     +  +A +A  H   L+ D      +     
Sbjct: 156 RVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEH 215

Query: 185 -RPLELGAD--IVMHSATK----------FIAGHSDVMAGVLAVK 216
             P  +  +  + ++ A K          +  G  +V+  + +V 
Sbjct: 216 FSPGRVAPEHTLTVNGAAKAFAMTGWRIGYACGPKEVIKAMASVS 260

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

 Score = 49.9 bits (118), Expect = 1e-07
 Identities = 19/167 (11%), Positives = 45/167 (26%), Gaps = 31/167 (18%)

Query: 38  QPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL-AAVTHLLGTGEEI 96
             +A   G   +  SG+ +  AL   +  +      +    G  A    +  L+   E+ 
Sbjct: 59  MQAAMMRGDEAF--SGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQE 116

Query: 97  VAGDDLYGGT-----------------------DRLLSRVTPKTGVVVKRVNTCDLDEVA 133
              D                                 +  T          +   L+   
Sbjct: 117 KGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGI 176

Query: 134 SAIGPWTKLVWVESPTNPR-----QQICDIRKIAEMAHAHGALLLVD 175
             +GP      V + T+         + +++ +  +A  +   +++D
Sbjct: 177 EEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMD 223

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.2 bits (116), Expect = 2e-07
 Identities = 22/185 (11%), Positives = 50/185 (27%), Gaps = 19/185 (10%)

Query: 77  TSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV-----NTCDLDE 131
            S       + H     + I+          + +        VV++ V        DL  
Sbjct: 124 MSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSM-VTAGFEPVVIENVLEGDELRTDLKA 182

Query: 132 VASA----IGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDN--SIMSPVLSR 185
           V +            +   +     +    + ++A +   +    +V+N   + S     
Sbjct: 183 VEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMH 242

Query: 186 PLEL-----GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC 240
            ++        D  + S  K           ++A   E   +++  +     S     D 
Sbjct: 243 LIQQGARVGRIDAFVQSLDKNFMVPVGGA--IIAGFNEPFIQDISKMYPGRASASPSLDV 300

Query: 241 WICLR 245
            I L 
Sbjct: 301 LITLL 305

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 364

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 49.0 bits (115), Expect = 2e-07
 Identities = 32/207 (15%), Positives = 60/207 (28%), Gaps = 10/207 (4%)

Query: 44  NGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLY 103
                      P  D + + L K    D A        A  AV H L   +  V  D+  
Sbjct: 36  TTGRLDEIKTPPIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMHSLAKKDAWVVMDENC 95

Query: 104 GGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW---------TKLVWVESPTNPRQQ 154
             +  + +        +V + +  D                      L  +  P      
Sbjct: 96  HYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGN 155

Query: 155 ICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLA 214
           + D++KIA++   +   LLV+ +     +   L+      +  +       S    GV+ 
Sbjct: 156 LPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAAS-GPIGVMG 214

Query: 215 VKGERLAKELYFLQNAEGSGLAPFDCW 241
           +K E     L   +  +   +    C 
Sbjct: 215 MKEEWAEIVLRRSEKYKNKEVELLGCT 241

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 46.8 bits (110), Expect = 1e-06
 Identities = 33/187 (17%), Positives = 66/187 (35%), Gaps = 31/187 (16%)

Query: 41  ATENGPYDYTRS-GNPT-RDALESLLAKL------DKADRALCFTSGMAALAAVTHLLGT 92
           A + G   Y  + G    R+A+   L K        K +  +   +  A L  ++  L  
Sbjct: 50  ALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKD 109

Query: 93  GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWV 145
           GEE++     +      +       G     V T        ++DE+   +   T+ + +
Sbjct: 110 GEEVLIPTPAFVSYAPAVIL----AGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALII 165

Query: 146 ESPTNPRQQIC---DIRKIAEMAHAHGALLLVD---------NSIMSPVLSRPLELGADI 193
            SP NP   +    D+ +IA+    H  +++ D         ++    + S        I
Sbjct: 166 NSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTI 225

Query: 194 VMHSATK 200
            ++  +K
Sbjct: 226 TVNGFSK 232

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

 Score = 46.1 bits (108), Expect = 2e-06
 Identities = 31/267 (11%), Positives = 78/267 (29%), Gaps = 41/267 (15%)

Query: 38  QPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSG-MAALAAVTHLLGTGEEI 96
           Q +A   G   Y   G+     L+    +L   D  +    G  A       LL   ++ 
Sbjct: 60  QWAAMITGDEAYA--GSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQKE 117

Query: 97  VAGDDLYGGTDR------------------LLSRVTPKTGVVVKRVNTCDLDEVASAIGP 138
               +    ++                   +++     +          D+ ++   I  
Sbjct: 118 GKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQ 177

Query: 139 W----TKLVWVESPTNPRQQIC----DIRKIAEMAHAHGALLLVDN------------SI 178
                   +      N          +++++ E+A  HG  +++D+              
Sbjct: 178 HGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARD 237

Query: 179 MSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF 238
                +   E+  D+  ++    ++   D +  +  +   R  +E++ L       +  F
Sbjct: 238 PKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGF 297

Query: 239 DCWICLRGVKTMALRVEKQQVCFFDLL 265
             +  L G    A+    ++    + L
Sbjct: 298 VTYGGLAGRDMAAMVQGLEEGTEEEYL 324

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} Length = 376

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

 Score = 44.6 bits (104), Expect = 5e-06
 Identities = 24/128 (18%), Positives = 49/128 (38%), Gaps = 7/128 (5%)

Query: 52  SGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGT--GEEIVAGDDLYGGTDRL 109
           +  P    LE+   +L     A+  +S  A +      LG   G+E++     +  T  +
Sbjct: 28  TTGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNM 87

Query: 110 LSRVTPKTGVVVKRVNTC--DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA 167
           +  +     +V    +T     + + +AI P TK +    P +      D+  I  +   
Sbjct: 88  IVLLGANPVMVDVDRDTLMVTPEHIEAAITPQTKAII---PVHYAGAPADLDAIYALGER 144

Query: 168 HGALLLVD 175
           +G  ++ D
Sbjct: 145 YGIPVIED 152

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} Length = 405

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

 Score = 43.0 bits (100), Expect = 2e-05
 Identities = 21/132 (15%), Positives = 46/132 (34%), Gaps = 6/132 (4%)

Query: 80  MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN-----TCDLDEVAS 134
           + A +     +  G+ I+     +         +  + G  ++ +      T  L+ + +
Sbjct: 99  LVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPT 158

Query: 135 AIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS-PVLSRPLELGADI 193
                T+L+ +   +N       + ++  +AH HGA +LVD +            L  D 
Sbjct: 159 LFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDF 218

Query: 194 VMHSATKFIAGH 205
            + S  K     
Sbjct: 219 YVFSGHKLYGPT 230

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} Length = 425

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

 Score = 40.8 bits (95), Expect = 9e-05
 Identities = 36/197 (18%), Positives = 60/197 (30%), Gaps = 31/197 (15%)

Query: 46  PYDYTRSGNPTRDALESLLAKL-------DKADRALCFTSG-----MAALAAVT-----H 88
            Y +    N     LE  + +L          DR + F  G        + +++      
Sbjct: 91  SYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTAT 150

Query: 89  LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESP 148
                 ++VA    Y    R  ++   K G V       +     +   P   +  V SP
Sbjct: 151 PDAPESKVVAHAPFYPVF-REQTKYFDKKGYVWAG----NAANYVNVSNPEQYIEMVTSP 205

Query: 149 TNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGA-DIVMHSATKFIAGHSD 207
            NP   +         A   G   + D     P  +        DI++ + +K   GHS 
Sbjct: 206 NNPEGLLRH-------AVIKGCKSIYDMVYYWPHYTPIKYKADEDILLFTMSK-FTGHSG 257

Query: 208 VMAGVLAVKGERLAKEL 224
              G   +K E +   L
Sbjct: 258 SRFGWALIKDESVYNNL 274

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} Length = 343

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

 Score = 40.1 bits (92), Expect = 1e-04
 Identities = 34/165 (20%), Positives = 59/165 (35%), Gaps = 20/165 (12%)

Query: 35  TFKQPS-----ATENGPYDYTRSGN-PTRDALESLLAKLDKADRALCFTSGMAA-LAAVT 87
           T  +P+     A           G  PT + LE L A+    + AL   SG      ++ 
Sbjct: 8   TVTKPTEEMRKAMAQAEVGDDVYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIM 67

Query: 88  HLLGTGEEIVAGDDLYGGTD---RLLSRVTPKTGVVVKRVNTCDLDEVASAI------GP 138
                G+E++   D +        +          V  +    D D+V  AI       P
Sbjct: 68  AHTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGKNGAMDPDDVRKAIRPRNIHFP 127

Query: 139 WTKLVWVESPTNPRQQIC----DIRKIAEMAHAHGALLLVDNSIM 179
            T L+ +E+  N          +I++I  +A  HG  + +D + +
Sbjct: 128 RTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARI 172

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} Length = 383

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

 Score = 39.5 bits (91), Expect = 3e-04
 Identities = 26/115 (22%), Positives = 48/115 (41%)

Query: 64  LAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKR 123
           LA+     RAL F SG AA  AV   +   E+ +A D L   +    + ++P        
Sbjct: 92  LAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAH 151

Query: 124 VNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSI 178
            +   L  + ++  P  ++V  E   +       + +I ++   H   L+VD++ 
Sbjct: 152 NDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAH 206

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

 Score = 39.4 bits (91), Expect = 3e-04
 Identities = 32/149 (21%), Positives = 61/149 (40%), Gaps = 13/149 (8%)

Query: 41  ATENGPYDYTRS-GNPT-RDALESLLAK---LDKADRALCFTSG--MAALAAVTHLLGTG 93
           A E G   Y  + G P  R+A+   L +   L      +  T+G   +    +  ++  G
Sbjct: 55  ALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPG 114

Query: 94  EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---DLDEVASAIGPWTKLVWVESPTN 150
           +E++     +     ++        ++   V T      +++  AI P TKL+   +P+N
Sbjct: 115 DEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSN 174

Query: 151 P---RQQICDIRKIAEMAHAHGALLLVDN 176
           P        ++R IA++A   G  +L D 
Sbjct: 175 PTGMVYTPDEVRAIAQVAVEAGLWVLSDE 203

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} Length = 368

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 127 CDLDEVASAIGPWTKLVWVESPTNPRQQIC---DIRKIAEMAHAHGALLLVD 175
            DL  +  A+ P T+ + + +P NP   +    ++  IA +A AH   L+ D
Sbjct: 140 LDLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISD 191

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	265
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	100.0
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	100.0
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	100.0
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	100.0
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	100.0
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	100.0
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	100.0
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	100.0
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	100.0
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.97
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	99.96
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	99.96
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	99.95
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	99.94
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	99.93
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	99.93
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	99.93
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	99.92
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	99.92
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	99.92
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	99.92
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	99.92
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	99.92
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	99.92
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.91
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	99.91
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	99.9
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	99.9
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.9
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	99.9
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	99.9
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	99.89
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	99.88
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	99.87
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	99.87
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	99.87
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	99.86
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	99.85
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	99.85
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	99.85
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	99.84
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	99.84
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	99.84
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	99.83
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	99.83
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	99.83
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	99.81
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	99.81
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	99.81
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	99.8
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	99.77
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	99.73
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	99.73
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	99.73
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	99.69
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.66
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	99.66
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	99.65
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	99.61
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	99.59
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	99.58
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	99.57
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	99.52
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	99.5
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	99.46
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	99.46
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	99.45
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	99.42
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	99.36
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	99.32
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	99.31
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	99.31
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	99.31
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	99.31
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	99.3
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	99.26
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	99.25
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	99.12
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	99.04
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	99.03
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	99.02
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	98.94
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	98.87
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	98.84
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	98.83
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	98.06
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	84.4
d2al1a1	295	Enolase {Baker's yeast (Saccharomyces cerevisiae)	80.45
d2akza1	294	Enolase {Human (Homo sapiens), gamma isoform [TaxI	80.11

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=3.9e-39  Score=276.63  Aligned_cols=255  Identities=84%  Similarity=1.276  Sum_probs=241.3

Q ss_pred             ceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHHHHHHh
Q 024619           10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHL   89 (265)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~~~~~~   89 (265)
                      ++.+++.+...|+.|...+|++++.++..+.......|.|+|.|+|..+.++++++.+.|++.+++++||++|+.+++.+
T Consensus         4 ~t~~~h~~~~~dp~ga~~~PI~~sstf~~~~~~~~~~~~Y~R~~nPt~~~le~~la~LE~~~~a~~fsSGMaAisall~l   83 (380)
T d1ibja_           4 STLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLAKLDKADRAFCFTSGMAALSAVTHL   83 (380)
T ss_dssp             HHHHTCCCCSSCTTCCSSCCCCCCSBCCCSSSSCCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHTT
T ss_pred             hHhhhcCCCCCCCCCCccCCccCCcceecCCCCccCCceeeCCCChHHHHHHHHHHHHcCCceEEehhhHHHHHHHHHHh
Confidence            45567777788899999999999999988877777889999999999999999999999999999999999999888899


Q ss_pred             cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcC
Q 024619           90 LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHG  169 (265)
Q Consensus        90 ~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~  169 (265)
                      +++||+|++..+.|.+....+.......|+++.+++..+.+++++++++++++|+++.|.||+..+.|+++|+++|+++|
T Consensus        84 l~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~~~~~~~~ai~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g  163 (380)
T d1ibja_          84 IKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQG  163 (380)
T ss_dssp             SCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTTSHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHTTT
T ss_pred             hCCCCEEEEEecccccccchhhhhhccccccccccCcchHHHHHHHhccCccEEEeccccccccccccHHHHHHHHHHcC
Confidence            99999999999999999999988899999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccCc
Q 024619          170 ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT  249 (265)
Q Consensus       170 ~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  249 (265)
                      +++|+|.+++.+....|.+.|+|+++.|++|+++|.....+|.++.+++.+.+.....+...+..++|.++|++.+++++
T Consensus       164 ~~~vVDnT~atP~~~~Pl~~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~T  243 (380)
T d1ibja_         164 ALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKT  243 (380)
T ss_dssp             CEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTT
T ss_pred             CeEEeeccccccccccccccCCCEEEecccceeccccCccccccccchhhHHHHHHhhccccCCcCCHHHHHHHHhcchh
Confidence            99999999999999999999999999999999999999999999999888888888889999999999999999999999


Q ss_pred             hHhhHHHHhhchhcc
Q 024619          250 MALRVEKQQVCFFDL  264 (265)
Q Consensus       250 ~~~~~~~~~~~~~~l  264 (265)
                      +..|++++.+|+..+
T Consensus       244 l~lRm~~~~~nA~~l  258 (380)
T d1ibja_         244 MALRIEKQQENARKI  258 (380)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHH
Confidence            999999999998765

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=100.00  E-value=1.3e-38  Score=273.79  Aligned_cols=258  Identities=38%  Similarity=0.630  Sum_probs=225.5

Q ss_pred             CCcceeEeeccCC-CCCCCCCCCCeeeccccccCCCC--------CCCCCccCCCCChhHHHHHHHHHhHhCCCceEEec
Q 024619            7 PGVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFT   77 (265)
Q Consensus         7 ~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~   77 (265)
                      ++++|..|+-+.. .+..|...||++++.++..+...        ....+.|+|.|+|.++.+++.++++.|.+..++++
T Consensus         2 ~g~~T~~vH~G~~~~~~~g~v~pPI~~ssT~~f~~~~~~~~~~~~~~~~~~Y~R~~nPT~~~LE~~la~LEg~~~a~~~~   81 (392)
T d1gc0a_           2 PGFATRAIHHGYDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGLALA   81 (392)
T ss_dssp             CCHHHHHHHTTCCGGGGTTBSSCCBCCCSCBCCC---------------------CCHHHHHHHHHHHHHHTCSEEEEES
T ss_pred             cCcchhceeCCCCCCCCCCCeeCCccCCCCEeeCCHHHHHHhhcCCcCCceecCCCChHHHHHHHHHHHHhCCcceeehh
Confidence            4566777877633 24578999999999998765432        23457899999999999999999999999999999


Q ss_pred             chHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccc
Q 024619           78 SGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQIC  156 (265)
Q Consensus        78 ~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~  156 (265)
                      ||++|+. +++.++++||+|++.+..|++....+...++..|+++.+++..|++++++++++++++|++++|.||+..+.
T Consensus        82 SGmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~~d~~d~~~~~~ai~~~t~lv~~Esp~NP~l~v~  161 (392)
T d1gc0a_          82 SGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMA  161 (392)
T ss_dssp             SHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCTTEEEEEEESSCTTTCCCC
T ss_pred             hHHHHHHHHHHhhccCCCeeecccccchhhhhhhhhhhccCCcccccCCccCHHHHHHhCCCCCeEEEecccccceeeec
Confidence            9999996 788999999999999999999999998999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHH-HHHHHHHhccCCC
Q 024619          157 DIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQNAEGSGL  235 (265)
Q Consensus       157 ~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~-~~~~~~~~~~~~~  235 (265)
                      |+++|+++|+++|+++++|.+++.+....|.+.|+||++.|++|+++|+..+.+|.+++++..+.. .....+...|..+
T Consensus       162 Di~~i~~ia~~~g~~~vvDnT~atP~~~~Pl~~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~~~~G~~~  241 (392)
T d1gc0a_         162 DIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVL  241 (392)
T ss_dssp             CHHHHHHHHGGGTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCC
T ss_pred             chHHHHHHHHhcCCEEEEecCccCccccChHHhCCCEEEEecceeecCCcccccccccchhHHHHHHHHHHHHHccCCcC
Confidence            999999999999999999999999999999999999999999999999999999999998877655 3455667789999


Q ss_pred             ChhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619          236 APFDCWICLRGVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       236 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l  264 (265)
                      +|.++|+++++++++..|++++.+|+..+
T Consensus       242 ~p~da~ll~rgl~TL~lRm~~~~~nA~~l  270 (392)
T d1gc0a_         242 SPHDAALLMRGIKTLNLRMDRHCANAQVL  270 (392)
T ss_dssp             CHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             ChhhHHHHHhccccHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999875

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=100.00  E-value=3.1e-38  Score=271.68  Aligned_cols=260  Identities=41%  Similarity=0.684  Sum_probs=236.1

Q ss_pred             CCCCcceeEeeccCC-CCCCCCCCCCeeeccccccCCC--------CCCCCCccCCCCChhHHHHHHHHHhHhCCCceEE
Q 024619            5 EEPGVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSA--------TENGPYDYTRSGNPTRDALESLLAKLDKADRALC   75 (265)
Q Consensus         5 ~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~--------~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~   75 (265)
                      |++++++..|+-+.. .+..|...||++++.++..+..        .....+.|+|.|+|.++.+++.++.+.|.+..++
T Consensus         4 k~~~f~T~~ih~G~~~~~~~g~v~pPI~~sST~~~~~~~~~~~~~~~~~~~~~Y~R~~nPT~~~LE~~la~LEgg~~a~~   83 (397)
T d1y4ia1           4 RTYGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERGEAGLA   83 (397)
T ss_dssp             GGSCHHHHHHHTTCCCCTTTCCSSCCCCCCSCCCCSSHHHHHHHHHSCSSSSCCCTTSCHHHHHHHHHHHHHHTCSEEEE
T ss_pred             CCCCccceeEeCCCCCCCCCCCccCCccCCCCeeeCCHHHHHHhhcCCcCCceeeCCCCHHHHHHHHHHHHHhCCcccee
Confidence            567788889998743 3467899999999999876543        1345688999999999999999999999999999


Q ss_pred             ecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccc
Q 024619           76 FTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQ  154 (265)
Q Consensus        76 ~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~  154 (265)
                      ++||++|+. +++.++++||+|++.+..|.+..+.+...+.+.|+++.+++..|++.+++++++++++|++++|.||+..
T Consensus        84 ~sSGmaAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~vd~~d~~~~~~~i~~~Tklv~~Esp~NP~l~  163 (397)
T d1y4ia1          84 TASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAGKPEEIRAAMRPETKVVYIETPANPTLS  163 (397)
T ss_dssp             ESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTTSHHHHHHHCCTTEEEEEEESSCTTTCC
T ss_pred             ehHHHHHHHHHHhhccCCCCeeeeecccccccchhhhcccCCCceEeeccCCCCHHHHHHhcCCCCcEEEecCCccccee
Confidence            999999996 7889999999999999999999988888888999999999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHH-HHHHHHhccC
Q 024619          155 ICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE-LYFLQNAEGS  233 (265)
Q Consensus       155 ~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~-~~~~~~~~~~  233 (265)
                      +.|+++|+++|+++|+++++|.+++.+....|.+.|+||++.|++|+++|+..+.+|+++.+++.+.+. ....+...|.
T Consensus       164 v~Di~~i~~iA~~~gi~~vvDnT~atP~~~~Pl~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~~G~  243 (397)
T d1y4ia1         164 LVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGG  243 (397)
T ss_dssp             CCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCC
T ss_pred             ecccHHHHHHhhcCCceEEecCcccCcccCcchhcCCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHHHHHhCcCC
Confidence            999999999999999999999999999999999999999999999999999999999999988776553 3345667799


Q ss_pred             CCChhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619          234 GLAPFDCWICLRGVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       234 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l  264 (265)
                      .++|.++|+++++|+++..|++++.+|+..+
T Consensus       244 ~l~p~~a~l~~rgl~TL~lRm~~~~~nA~~l  274 (397)
T d1y4ia1         244 CMSPFNAWLTLRGVKTLGIRMERHCENALKI  274 (397)
T ss_dssp             CCCHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHcCcCcHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999875

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.3e-38  Score=268.75  Aligned_cols=257  Identities=36%  Similarity=0.557  Sum_probs=237.9

Q ss_pred             CcceeEeeccCCC-CCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-H
Q 024619            8 GVSTLLMNFSNEF-DPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-A   85 (265)
Q Consensus         8 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~   85 (265)
                      ++.+..++-+... +..|...||++++.++..+.......+.|+|.|+|..+.+++.++++.|.+..++++||++|+. +
T Consensus         2 k~~T~~vh~G~~~~~~~gav~pPI~~sst~~~~~~~~~~~~~Y~R~~nPt~~~le~~la~LEgg~~a~~~sSGMaAi~~~   81 (384)
T d1cs1a_           2 KQATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNEPRAHDYSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLV   81 (384)
T ss_dssp             CHHHHHHHTTTTCCTTTCBSSCCBCCCSBBCCSBTTBCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHH
T ss_pred             ChhhheeeCCCCCCCCCCCccCCccCCCCeecCCCCcccCCcccCCCCHHHHHHHHHHHHHhCCCceEEecChHHHHHHH
Confidence            3456667766433 4689999999999999877666667899999999999999999999999999999999999996 7


Q ss_pred             HHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHH
Q 024619           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA  165 (265)
Q Consensus        86 ~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a  165 (265)
                      ++.++++||.|++.+..|.+....+...++..|+++.+++..|.+++++++.+++++|++++|.||+..+.|+++|+++|
T Consensus        82 l~~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~d~~d~~~~~~~~~~~t~~v~~EspsNP~l~v~Di~~i~~ia  161 (384)
T d1cs1a_          82 TTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLA  161 (384)
T ss_dssp             HHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTTCHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHH
T ss_pred             HhhcccccceecccccccchhhhhhhhhhcccccccccccCCCHHHHHhhccccccEEEEeccccccceeccHHHHhhhh
Confidence            78899999999999999999988888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHh
Q 024619          166 HAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR  245 (265)
Q Consensus       166 ~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (265)
                      +++|+++++|.+++.+....|.+.|+||++.|++|+++|...+.+|+++.+++.+...+...+...+..+++.++|++++
T Consensus       162 ~~~g~~~vVDNT~atP~~~~Pl~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~G~~~~p~~a~ll~r  241 (384)
T d1cs1a_         162 REVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLR  241 (384)
T ss_dssp             HHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHH
T ss_pred             hhcCcEEEEeccccCcccccccccCCCEEEEccccccccCCCcccccccCCchhhhhhhhhhhhhhhhccccccHHHHhh
Confidence            99999999999999999999999999999999999999999999999999888888888888888999999999999999


Q ss_pred             ccCchHhhHHHHhhchhcc
Q 024619          246 GVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       246 ~l~~~~~~~~~~~~~~~~l  264 (265)
                      +|+++..|++++.+|+..+
T Consensus       242 gL~TL~lRm~~~~~nA~~l  260 (384)
T d1cs1a_         242 GLRTLVPRMELAQRNAQAI  260 (384)
T ss_dssp             HHTTHHHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHH
Confidence            9999999999999999865

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.9e-37  Score=264.08  Aligned_cols=260  Identities=41%  Similarity=0.670  Sum_probs=238.6

Q ss_pred             CCCCCcceeEeeccCCCCCCCCCCCCeeeccccccCCCC-CCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHH
Q 024619            4 EEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSAT-ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAA   82 (265)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~a   82 (265)
                      .+..+.+++.++-+...|..|...||++++.++..+... ....|.|+|.|+|.++.+++.++++.|.+..++++||++|
T Consensus         3 ~~~~~f~T~~vHag~~~d~~gav~pPI~~ssTf~~~~~~~~~~~y~YsR~gnPT~~~lE~~la~LE~~~~a~~~sSGmaA   82 (393)
T d1n8pa_           3 QESDKFATKAIHAGEHVDVHGSVIEPISLSTTFKQSSPANPIGTYEYSRSQNPNRENLERAVAALENAQYGLAFSSGSAT   82 (393)
T ss_dssp             CSSCCHHHHHHHTTCCCCSSCCSSCCBCCCSBCCBSSSSSBSSSCCBTTTCCHHHHHHHHHHHHHTTCSEEEEESCHHHH
T ss_pred             CCCCCcchheEECCCCCCCCCCccCCcCCCCceecCCcccccCCeeeeCCCChHHHHHHHHHHHHhCCceEEEecCchhH
Confidence            455677888999886667889999999999998776543 3456899999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHH
Q 024619           83 LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIA  162 (265)
Q Consensus        83 l~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~  162 (265)
                      +.+++.++.+||+|++....|.+....+...+.+.|+++.+++ .+.+++++++++++++|+++.|.||+..+.|+++|+
T Consensus        83 i~~~l~~l~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~~~~~-~~~~~~~~~i~~~t~lv~~EspsNP~l~v~Di~~ia  161 (393)
T d1n8pa_          83 TATILQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTN-DLLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVA  161 (393)
T ss_dssp             HHHHHHTSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEES-SHHHHHHHHSCSSEEEEEECSSCTTTCCCCCHHHHH
T ss_pred             HHhhhhcccCCCeeeeeeeecccchhhhhhhhhcccceeEEee-cchHHHHHHhhhhcceeEecCcchhhhhccchhhhh
Confidence            9877888999999999999999999999999999999999888 456899999999999999999999999999999999


Q ss_pred             HHHH----HcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChh
Q 024619          163 EMAH----AHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF  238 (265)
Q Consensus       163 ~~a~----~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~  238 (265)
                      ++|+    ++|+++++|.+++.+....|.+.|+||++.|++|+++|...+++|+++.++..+.+.+...+...+..++|.
T Consensus       162 ~~a~~~~~~~g~~lvVDnT~atP~~~~Pl~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~~~~G~~~~p~  241 (393)
T d1n8pa_         162 DLIKKHAAGQDVILVVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPF  241 (393)
T ss_dssp             HHHHHHTTTTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHH
T ss_pred             hhhhhhcccCCceEEEecCccCcccCCchhhCCCEEEEccccccCCCCccccceeeecchhHHHHHHHHHhhcCCCCChH
Confidence            9999    678999999999999999999999999999999999999999999998888888888888899999999999


Q ss_pred             HHHHHHhccCchHhhHHHHhhchhcc
Q 024619          239 DCWICLRGVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       239 ~~~~~~~~l~~~~~~~~~~~~~~~~l  264 (265)
                      ++|+++++++++..|++++.+|+.++
T Consensus       242 ~a~ll~rgl~Tl~lR~~~~~~nA~~l  267 (393)
T d1n8pa_         242 DAWLTHRGLKTLHLRVRQAALSANKI  267 (393)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCcchhhHHHHHHHHHHHH
Confidence            99999999999999999999999765

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.8e-35  Score=254.84  Aligned_cols=254  Identities=23%  Similarity=0.395  Sum_probs=227.5

Q ss_pred             ceeEeeccCCCC-CCCCCCCCeeeccccccCCCC---------CCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecch
Q 024619           10 STLLMNFSNEFD-PYGALSTPLYQTATFKQPSAT---------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSG   79 (265)
Q Consensus        10 ~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~---------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g   79 (265)
                      ++.+++-+...+ ..|...||++++.++..+...         ..+.+.|+|.|+|.++.+++.++++.|++.+++++||
T Consensus         3 ~T~~vh~g~~~~~~~g~v~pPi~~sst~~f~~~~~~~~~~~~~~~~~~~Y~R~~nPt~~~le~~la~LEg~~~a~~~~SG   82 (391)
T d1cl1a_           3 DTQLVNAGRSKKYTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCG   82 (391)
T ss_dssp             HHHHHHTTCCHHHHTTBSSCCBCCCSCBCCSSHHHHHHHHHTTTTTCCCCTTTCCHHHHHHHHHHHHHHTCSEEEEESSH
T ss_pred             ccceecCCCCCCCCCCCccCCeeCCCceeeCCHHHHHHHhcCCccCceEeECCCChhHHHHHHHHHHHhCCccEEEeccc
Confidence            455666663333 478999999999988665421         2345789999999999999999999999999999999


Q ss_pred             HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccH
Q 024619           80 MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI  158 (265)
Q Consensus        80 ~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l  158 (265)
                      ++|+. +++.++++||+|++.+..|.++...+...+...|+++.+++..|.+++++++++++++|+++.|.||+..+.|+
T Consensus        83 MaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~d~~d~~~~~~~i~~~t~~i~~EtpsNP~l~v~Di  162 (391)
T d1cl1a_          83 AAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDV  162 (391)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTTCGGGGGGTCCTTEEEEEEESSCTTTCCCCCH
T ss_pred             cceeeehhhcccCCCCeEEEecccccchhhhhhhcccccccccccccCccccccccccccccceeeecccCccccccccc
Confidence            99996 77899999999999999999999999888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHc--CCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCC
Q 024619          159 RKIAEMAHAH--GALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA  236 (265)
Q Consensus       159 ~~i~~~a~~~--~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~  236 (265)
                      ++++++|+++  |+++++|.+++.+....|.+.|.|+++.|++|+++|...+++|.++.+++ ............+..++
T Consensus       163 ~~i~~~a~~~~~g~~~vVDnT~atP~~~~Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~-~~~~~~~~~~~~G~~~~  241 (391)
T d1cl1a_         163 PAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNAR-CWEQLRENAYLMGQMVD  241 (391)
T ss_dssp             HHHHHHHHHHCTTCEEEEECTTTTTTSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTT-THHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHhccCCcEEEEeccccchhhhcccccccceEEeecchhccccccccccceecccc-ccccchhhhhcccccCC
Confidence            9999999775  99999999999999999999999999999999999999999999987765 44556667778889999


Q ss_pred             hhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619          237 PFDCWICLRGVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l  264 (265)
                      |..+|+++++|+++..|++++.+|+..+
T Consensus       242 p~~a~ll~rgl~TL~lR~~~~~~nA~~v  269 (391)
T d1cl1a_         242 ADTAYITSRGLRTLGVRLRQHHESSLKV  269 (391)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhccchhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999765

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=100.00  E-value=1.2e-35  Score=256.14  Aligned_cols=258  Identities=34%  Similarity=0.600  Sum_probs=230.8

Q ss_pred             CCcceeEeeccCCCCCCCCCCCCeeeccccccCCC--------CCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecc
Q 024619            7 PGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSA--------TENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTS   78 (265)
Q Consensus         7 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--------~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~   78 (265)
                      .++++..++-+...|..|...||++++.++..+..        .....+.|+|.|+|.++.+++.++++.|++..++++|
T Consensus         3 ~~~~T~~vh~g~~~d~~gav~~PI~~sst~~~~~~~~~~~~~~~~~~~~~YsR~~nPT~~~le~~la~LEg~~~a~~~sS   82 (394)
T d1e5ea_           3 MTPATACIHANPQKDQFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNLEGKIAFLEKTEACVATSS   82 (394)
T ss_dssp             CCHHHHHHHSSCCCCTTCCSSCCCCCCSBCCCSSHHHHHHHHTTSSCSCCBTTTCCHHHHHHHHHHHHHHTCSEEEEESS
T ss_pred             CCHHHHheeCCCCCCCCCCeeCCccCCCCeeeCCHHHHHHhhcCCcCCceecCCCCHHHHHHHHHHHHHhCCcceeeecc
Confidence            45667788888777889999999999999876542        2345689999999999999999999999999999999


Q ss_pred             hHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCcccccc
Q 024619           79 GMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD  157 (265)
Q Consensus        79 g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~  157 (265)
                      |++|+. ++++++++||.|++.+..|.+....+...+...|+++.+++..|.+++++++++++++|+++.|.||+..+.|
T Consensus        83 GmaAi~~~~l~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~gi~~~~~d~~d~~~~~~~i~~~t~lv~~Etp~NP~l~v~D  162 (394)
T d1e5ea_          83 GMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTAIPGEVKKHMKPNTKIVYFETPANPTLKIID  162 (394)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHHCCTTEEEEEEESSCTTTCCCCC
T ss_pred             chHHHHHHHHhhcccccccccccceeehhhHhHHHHhhccceeeeccCCCCHHHHHHhhcccccEEEEeccCCcceeeeh
Confidence            999996 7899999999999999999999888888889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH-cCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHH-HHHHHhccCCC
Q 024619          158 IRKIAEMAHA-HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL-YFLQNAEGSGL  235 (265)
Q Consensus       158 l~~i~~~a~~-~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~-~~~~~~~~~~~  235 (265)
                      ++++++.+++ +|+++++|.+++.+....|.+.|+||++.|++|+++|+..+++|+++.+++.+.... ...+...|..+
T Consensus       163 i~~~~~~~~~~~g~~vvvDnT~atP~~~~Pl~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~~~~~G~~l  242 (394)
T d1e5ea_         163 MERVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVI  242 (394)
T ss_dssp             HHHHHHHHHTSTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCC
T ss_pred             hhhhhhccccccCeEEEecCcccCcccCCchhcCCCEEEechhhhcCCCcccccccccchhhHHHHHHHHHHHHhhCCCC
Confidence            9999987765 689999999999999999999999999999999999999999999988876654422 22334578999


Q ss_pred             ChhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619          236 APFDCWICLRGVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       236 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l  264 (265)
                      +|.++|+++++||++..|++++.+|+..+
T Consensus       243 sp~~a~ll~rgl~TL~lRm~r~~~nA~~l  271 (394)
T d1e5ea_         243 SPHDAWLITRGLSTLNIRMKAESENAMKV  271 (394)
T ss_dssp             CHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHhhchhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999865

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=3.8e-35  Score=254.06  Aligned_cols=256  Identities=33%  Similarity=0.455  Sum_probs=220.4

Q ss_pred             cceeEeeccCCCC-CCCCCCCCeeeccccccCCC--------CCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecch
Q 024619            9 VSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSA--------TENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSG   79 (265)
Q Consensus         9 ~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~--------~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g   79 (265)
                      .++..|+-+...+ ..|...||++++.++..+..        .....+.|+|.|+|.++.+++.++++.|++.+++++||
T Consensus         3 ~~T~~vh~g~~~~~~~gsv~pPI~~sstf~~~~~~~~~~~~~~~~~~~~YsR~~nPT~~~LE~~la~LE~~~~a~~~~SG   82 (421)
T d2ctza1           3 FETLQLHAGYEPEPTTLSRQVPIYPTTSYVFKSPEHAANLFALKEFGNIYSRIMNPTVDVLEKRLAALEGGKAALATASG   82 (421)
T ss_dssp             HHHHHHHTTCCCCTTTCBSSCCBCCCSCBCCSCHHHHHHHHTTTTGGGSCBTTBCHHHHHHHHHHHHHHTCSEEEEESSH
T ss_pred             hhHhheeCCCCCCCCCCCccCCccCCCCeecCCHHHHHHhhcCCcCCceecCCCCHHHHHHHHHHHHHhCCCeEEEecCh
Confidence            4566677664333 47889999999999876532        12345889999999999999999999999999999999


Q ss_pred             HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCC-HHHHHhhcCCCceEEEEecCCCCcccccc
Q 024619           80 MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCD-LDEVASAIGPWTKLVWVESPTNPRQQICD  157 (265)
Q Consensus        80 ~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d-~~~l~~~~~~~~~~i~~~~~~np~G~~~~  157 (265)
                      ++|+. +++.++++||+|++.+..|.+....+...+.+.|+++.+++..+ .+..++.+++++++|+++.|.||+..+.|
T Consensus        83 maAi~~~~~~l~~~gd~il~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~~~~~~~~~~~~~~t~li~~EtpsNP~l~v~D  162 (421)
T d2ctza1          83 HAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREERPEEFLALTDEKTRAWWVESIGNPALNIPD  162 (421)
T ss_dssp             HHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTCCHHHHHHHCCTTEEEEEEESSCTTTCCCCC
T ss_pred             HHHHHHHHHhhcccccceeecCCcCCchhHHHHHHHhhccccceecccccCcchhccccCCCceEEEEcCCCcceeEecc
Confidence            99985 88999999999999999999999999889999999999998755 56667778899999999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEeCCcC-CCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHH---------------
Q 024619          158 IRKIAEMAHAHGALLLVDNSIM-SPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA---------------  221 (265)
Q Consensus       158 l~~i~~~a~~~~~~li~D~~~~-~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~---------------  221 (265)
                      +++|+++|+++|+++++|.+++ .+....|.+.|+||++.|++|+++|+..+++|+++.+++.+.               
T Consensus       163 i~~i~~iA~~~g~~~vvDnT~a~tP~~~~Pl~~GaDiVvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~  242 (421)
T d2ctza1         163 LEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGY  242 (421)
T ss_dssp             HHHHHHHHHHHTCEEEEECGGGGGGTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGG
T ss_pred             hHHHHHHHHhcCCceEecccccccceeccccccCCcEEEEechhhccCCCCeEEEEEEcCCcchhhhcccccccCCchhh
Confidence            9999999999999999999998 577788999999999999999999999999999987654211               


Q ss_pred             ----------------HHHHHHHHhccCCCChhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619          222 ----------------KELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       222 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l  264 (265)
                                      +.........|..++|.++|+++++|+++..|++++.+|+..+
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~sP~~a~l~~rgl~TL~lRm~~~~~nA~~v  301 (421)
T d2ctza1         243 HGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHL  301 (421)
T ss_dssp             TTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHhccHHHHHHHHHHHHHhccCCCCHHHHHHHhcCCcchhhHHHHHHHHHHHH
Confidence                            1111222346899999999999999999999999999999765

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=4.1e-34  Score=246.20  Aligned_cols=255  Identities=30%  Similarity=0.524  Sum_probs=226.2

Q ss_pred             cceeEeeccCCCC---CCCCCCCCeeeccccccCCC--------CCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEec
Q 024619            9 VSTLLMNFSNEFD---PYGALSTPLYQTATFKQPSA--------TENGPYDYTRSGNPTRDALESLLAKLDKADRALCFT   77 (265)
Q Consensus         9 ~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~--------~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~   77 (265)
                      .++..++-+...+   ..|...||++++.++..+..        .....+.|+|.|+|..+.++++++++.|++.+++++
T Consensus        10 ~~T~avH~G~~~~~~~~~~av~~PI~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~nPt~~~LE~~la~LEgg~~a~~~s   89 (398)
T d1qgna_          10 DGSVAIHAGERLGRGIVTDAITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEGAESTLLMA   89 (398)
T ss_dssp             HHHHHHHTTTTTCCSSCCSBSSCCBCCCSBBCBSSHHHHHHHHTTSSCCCCBGGGCCHHHHHHHHHHHHHHTCSEEEEES
T ss_pred             CccEEEeCCCcCCCCCCCCCccCCeeCCCcEEeCCHHHHHHHhcCCcCCceecCCCChHHHHHHHHHHHHhCCceEEEec
Confidence            3477788774322   36889999999999876542        234678999999999999999999999999999999


Q ss_pred             chHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHh-hcCCCceEEEEecCCCCcccc
Q 024619           78 SGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVAS-AIGPWTKLVWVESPTNPRQQI  155 (265)
Q Consensus        78 ~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~-~~~~~~~~i~~~~~~np~G~~  155 (265)
                      ||++|+. ++++++++||+|++.+..|.+....+....+..|+++.+++..+.++..+ .+.+++++|++++|.||+..+
T Consensus        90 SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~t~~v~~EspsNP~l~v  169 (398)
T d1qgna_          90 SGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGALELALNQKKVNLFFTESPTNPFLRC  169 (398)
T ss_dssp             CHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSSCHHHHHHHHHHSCEEEEEEESSCTTTCCC
T ss_pred             CcchHHHHHHhhcccccccccccccccchhhhhhcccccccccccccccccchhhhhhhhccccceEEEccCcccccccc
Confidence            9999986 78889999999999999999999999899999999999999777666554 456899999999999999999


Q ss_pred             ccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCC
Q 024619          156 CDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL  235 (265)
Q Consensus       156 ~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~  235 (265)
                      .|+++|+++|+++|+++++|.+++.+....|.+.|+||++.|++|+++|+..+.+|++..+.+ ........+...+..+
T Consensus       170 ~Di~~ia~ia~~~g~~~vVDnT~atP~~~~Pl~~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~-~~~~~~~~~~~~G~~l  248 (398)
T d1qgna_         170 VDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLK-LVSEIRNLHHILGGAL  248 (398)
T ss_dssp             CCHHHHHHHHHHTTCEEEEECTTTCTTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHH-HHHHHHHHHHHHCCCC
T ss_pred             chHHHHHHHHhhcCCEEEecceeeccccCCchhhCCCEEEEechhhcCcccceeehhhcchhh-hhhhhhhhcccCCCcC
Confidence            999999999999999999999999999999999999999999999999999999998876554 4566677788889999


Q ss_pred             ChhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619          236 APFDCWICLRGVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       236 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l  264 (265)
                      +|.++|+++++|+++..|++++.+|+..+
T Consensus       249 ~p~~a~ll~rgl~TL~lRm~~~~~nA~~l  277 (398)
T d1qgna_         249 NPNAAYLIIRGMKTLHLRVQQQNSTALRM  277 (398)
T ss_dssp             CHHHHHHHHHHGGGHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999865

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=99.97  E-value=1.1e-30  Score=220.59  Aligned_cols=206  Identities=35%  Similarity=0.600  Sum_probs=188.2

Q ss_pred             HHHHHHHhHhCCCceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcC
Q 024619           59 ALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG  137 (265)
Q Consensus        59 ~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~  137 (265)
                      +++++++++.|++..++++||++|+. +++.++++||+|++.+..|.+....+...++..|+++.+++..|.+.++++++
T Consensus         2 aLE~~la~Leg~~~a~~~sSGMaAi~~~l~~ll~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~~d~~~~~~~i~   81 (331)
T d1pffa_           2 ALEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNIEKHLK   81 (331)
T ss_dssp             HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHTCC
T ss_pred             HHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEecccchhhHhhhcc
Confidence            68999999999999999999999985 78999999999999999999999898888899999999999999999999999


Q ss_pred             CCceEEEEecCCCCccccccHHHHHHHH-HHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEee
Q 024619          138 PWTKLVWVESPTNPRQQICDIRKIAEMA-HAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVK  216 (265)
Q Consensus       138 ~~~~~i~~~~~~np~G~~~~l~~i~~~a-~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~  216 (265)
                      +++++|++++|.||+..+.|++.+++++ +++|+++++|.+++.+....|.+.|+|+++.|++|+++|....++|+++.+
T Consensus        82 ~~t~~i~~Es~~np~~~v~d~~~~~~~~a~~~~~~~vVDnT~atp~~~~pl~~GaDiVv~S~TKy~~Gh~d~~~G~v~~~  161 (331)
T d1pffa_          82 PNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSR  161 (331)
T ss_dssp             TTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTSSSSSCCCEEEEEC
T ss_pred             cccceeeeecccccccccccchhhhhhhhcccCceEEeeccccccccccccccCCCEEEecchhhcCCCCcccccccccc
Confidence            9999999999999999999999999985 678999999999999999999999999999999999999999999999988


Q ss_pred             chhHHHHHH-HHHHhccCCCChhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619          217 GERLAKELY-FLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQVCFFDL  264 (265)
Q Consensus       217 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l  264 (265)
                      ++....... ..+...+..++|.++|+++++++++..|++++.+|+..+
T Consensus       162 ~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~Tl~~Rm~~~~~nA~~l  210 (331)
T d1pffa_         162 ADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDMRVKRAAENAQKV  210 (331)
T ss_dssp             HHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            765544222 233456889999999999999999999999999999865

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=99.96  E-value=7.3e-28  Score=209.00  Aligned_cols=218  Identities=19%  Similarity=0.229  Sum_probs=158.7

Q ss_pred             eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCCC---ceEEecchH-HHHH
Q 024619           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKAD---RALCFTSGM-AALA   84 (265)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~~~g~-~al~   84 (265)
                      ..+|+|+ .++..-..++.+.++.....    +.+.+.|++. |.+ +++++++++.+.+|..   +.+++++|+ +++.
T Consensus        30 ~~vi~l~-~G~p~~~~p~~v~~a~~~~~----~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al~  104 (388)
T d1j32a_          30 IDVCSFS-AGEPDFNTPKHIVEAAKAAL----EQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIF  104 (388)
T ss_dssp             CCCEECC-CSSCSSCCCHHHHHHHHHHH----HTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHH
T ss_pred             CCeEECC-CCCCCCCCCHHHHHHHHHHH----hcCCCCCCCCCCCHHHHHHHHHHHHHhcccCCCCceEEEcCCHHHHHH
Confidence            3579999 55543222333333322111    2245679887 887 5999999999988754   456666665 8886


Q ss_pred             -HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC-------CCHHHHHhhcCCCceEEEEecCCCCccccc
Q 024619           85 -AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPRQQIC  156 (265)
Q Consensus        85 -~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~~~~~~~~i~~~~~~np~G~~~  156 (265)
                       ++..++++||.|++++|+|+.+...    ++..|.+++.++.       .|++++++.+.++++++++++|+||||.+.
T Consensus       105 ~~~~~~~~~gd~Vlv~~P~y~~~~~~----~~~~~~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~P~NPTG~~~  180 (388)
T d1j32a_         105 NLMLAMIEPGDEVIIPAPFWVSYPEM----VKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVY  180 (388)
T ss_dssp             HHHHHHCCTTCEEEEESSCCTHHHHH----HHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCC
T ss_pred             HHHHHHhCCCCEEEEcCCCcHHHHHH----HHHhcCeEEEEecccccccCCCHHHHHHhCCCCCeEEEECCCCCCCCccc
Confidence             6778899999999999999999743    3556677777764       379999999999999999999999999996


Q ss_pred             c---HHHHHHHHHHcCCEEEEeCCcCCCCCcCC-----C-----CCCccEEEeccccccccCCCceeeEEEeechhHHHH
Q 024619          157 D---IRKIAEMAHAHGALLLVDNSIMSPVLSRP-----L-----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE  223 (265)
Q Consensus       157 ~---l~~i~~~a~~~~~~li~D~~~~~~~~~~~-----~-----~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~  223 (265)
                      +   +++|+++|+++|++||+||+|+...+...     .     ..+..+++.|+||.+ +.+|+|+||++++++.+.. 
T Consensus       181 ~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~-~~~GlRvG~~~~~~~~~~~-  258 (388)
T d1j32a_         181 TPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTY-AMTGWRVGFLAGPVPLVKA-  258 (388)
T ss_dssp             CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTT-TCTTTCCEEEECCHHHHHH-
T ss_pred             chhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCcccccceeEecCChhhh-hcchhHeEEEEECHHHHHH-
Confidence            5   78999999999999999999975544211     1     113579999999999 6678999999887765543 


Q ss_pred             HHHHHHhccCCCChhH
Q 024619          224 LYFLQNAEGSGLAPFD  239 (265)
Q Consensus       224 ~~~~~~~~~~~~~~~~  239 (265)
                      ............+...
T Consensus       259 ~~~~~~~~~~~~~~~~  274 (388)
T d1j32a_         259 ATKIQGHSTSNVCTFA  274 (388)
T ss_dssp             HHHHHHTTTCSCCHHH
T ss_pred             HHHhhhhccccccHHH
Confidence            3344443444444433

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=1e-27  Score=207.63  Aligned_cols=217  Identities=20%  Similarity=0.242  Sum_probs=160.2

Q ss_pred             eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCCC---ceEEecchH-HHHH
Q 024619           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKAD---RALCFTSGM-AALA   84 (265)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~~~g~-~al~   84 (265)
                      ..+|+|+ ..+..-+.++.+..+....    ..++.+.|++. |.+ +++++++++.+.+|.+   +.+++++|+ +++.
T Consensus        31 ~~vi~l~-~g~p~~~~p~~i~~a~~~~----~~~~~~~Y~~~~G~~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~al~  105 (382)
T d1b5pa_          31 VDLVALT-AGEPDFDTPEHVKEAARRA----LAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALF  105 (382)
T ss_dssp             CCCEECC-CSSCSSCCCHHHHHHHHHH----HHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHH
T ss_pred             CCeEECC-CCCCCCCCCHHHHHHHHHH----HhcCCcCCCCCCCCHHHHHHHHhhhhhhcccccccccceecCCHHHHHH
Confidence            4589999 5554322233332332111    12246789888 887 5999999998887653   455666664 8886


Q ss_pred             -HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC-------CCHHHHHhhcCCCceEEEEecCCCCccccc
Q 024619           85 -AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPRQQIC  156 (265)
Q Consensus        85 -~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~~~~~~~~i~~~~~~np~G~~~  156 (265)
                       ++..++++||.|++++|+|+.+.    ..++..|.+++.++.       .|++++++++.++++++++++||||||.+.
T Consensus       106 ~~~~~l~~~gd~vl~~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~P~NPTG~~~  181 (382)
T d1b5pa_         106 NLFQAILDPGDEVIVLSPYWVSYP----EMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVY  181 (382)
T ss_dssp             HHHHHHCCTTCEEEEEESCCTHHH----HHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEESSCTTTCCCC
T ss_pred             HHHHHhCCCCCEEEECCCCcHHHH----HHHHHhcCeEEEEecccccccCCCHHHHHHhCCCCCeEEEECCCCCCcchhC
Confidence             77889999999999999999997    445667888888864       389999999999999999999999999996


Q ss_pred             c---HHHHHHHHHHcCCEEEEeCCcCCCCCc----CC--CCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHH
Q 024619          157 D---IRKIAEMAHAHGALLLVDNSIMSPVLS----RP--LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL  227 (265)
Q Consensus       157 ~---l~~i~~~a~~~~~~li~D~~~~~~~~~----~~--~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~  227 (265)
                      +   +++|+++|++||++||+||+|+...+.    .+  ...+..+++.|+||.| +.+|+|+||++++++.+.. ....
T Consensus       182 s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~-~~~GlR~G~~~~~~~~i~~-~~~~  259 (382)
T d1b5pa_         182 PKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAF-AMTGWRIGYACGPKEVIKA-MASV  259 (382)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTT-TCGGGCCEEEECCHHHHHH-HHHH
T ss_pred             CHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHHcCCCCEEEEecchhhc-cCcHhheEEEEECHHHHHH-HHHH
Confidence            5   789999999999999999999854432    11  1235679999999999 6778999999987765533 3344


Q ss_pred             HHhccCCCChh
Q 024619          228 QNAEGSGLAPF  238 (265)
Q Consensus       228 ~~~~~~~~~~~  238 (265)
                      ........+..
T Consensus       260 ~~~~~~~~~~~  270 (382)
T d1b5pa_         260 SRQSTTSPDTI  270 (382)
T ss_dssp             HHTTTCSCCHH
T ss_pred             HHhcccCcccc
Confidence            44444444433

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.95  E-value=8.2e-28  Score=208.47  Aligned_cols=219  Identities=16%  Similarity=0.188  Sum_probs=158.3

Q ss_pred             EeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCC----CceEEecch-HHHHH-
Q 024619           13 LMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSG-MAALA-   84 (265)
Q Consensus        13 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~g-~~al~-   84 (265)
                      +|+|+ .++..-. +|+.+.......   ...+.+.|++. |.+ +++++++++.+..+.    ++.+++++| ++++. 
T Consensus        27 vi~l~-~g~p~~~-~p~~v~~~~~~a---~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l~~  101 (388)
T d1gdea_          27 VISLG-IGEPDFD-TPQHIKEYAKEA---LDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLM  101 (388)
T ss_dssp             CEECC-CCSCCSC-CCHHHHHHHHHH---HHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHH
T ss_pred             eEECC-CCCCCCC-CCHHHHHHHHHH---HhcCccCCCCCcCCHHHHHHHHHHHHhhccccCCChheeeeccCcchHHHH
Confidence            78998 4443222 233322221111   12245679888 886 599999999877653    234555555 48886 


Q ss_pred             HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC-------CCHHHHHhhcCCCceEEEEecCCCCcccccc
Q 024619           85 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPRQQICD  157 (265)
Q Consensus        85 ~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~  157 (265)
                      ++..++++||+|++++|+|+.+.    ..++..|.+++.++.       .|++++++.+.++++++++++|+||||.+.+
T Consensus       102 ~~~~l~~~gd~vlv~~P~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~P~NPtG~~~s  177 (388)
T d1gdea_         102 GLSAFLKDGEEVLIPTPAFVSYA----PAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLT  177 (388)
T ss_dssp             HHTTTCCTTCEEEEEESCCTTHH----HHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCC
T ss_pred             HHHHhcCCCCEEEECCCCcHHHH----HHHHHcCCEEEEeecccccCCCCCHHHHHHhCccCCeEEEECCCcCCCCCcCC
Confidence            66788999999999999999997    445667889888875       3799999999999999999999999999964


Q ss_pred             ---HHHHHHHHHHcCCEEEEeCCcCCCCCc-----CC----CCCCccEEEeccccccccCCCceeeEEEeechhHHHHHH
Q 024619          158 ---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RP----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY  225 (265)
Q Consensus       158 ---l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~----~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~  225 (265)
                         +++|+++|++++++||+||+|+.....     ..    ...+..+++.|+||.+ +.+|+|+||++++++.+.. ..
T Consensus       178 ~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~GlR~G~ii~~~~~~~~-~~  255 (388)
T d1gdea_         178 KKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTF-AMTGWRLGFVAAPSWIIER-MV  255 (388)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTT-TCGGGCCEEEECCHHHHHH-HH
T ss_pred             HHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhc-cCccccEEEEEeeccchhh-hh
Confidence               788999999999999999999854332     11    1224679999999999 6678999999988765544 44


Q ss_pred             HHHHhccCCCChhHHHH
Q 024619          226 FLQNAEGSGLAPFDCWI  242 (265)
Q Consensus       226 ~~~~~~~~~~~~~~~~~  242 (265)
                      ..........+...+..
T Consensus       256 ~~~~~~~~~~~~~~~~~  272 (388)
T d1gdea_         256 KFQMYNATCPVTFIQYA  272 (388)
T ss_dssp             HHHHTTTCSCCHHHHHH
T ss_pred             hccccccccccccchhh
Confidence            44444444444444333

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=99.94  E-value=2.9e-25  Score=191.50  Aligned_cols=221  Identities=18%  Similarity=0.197  Sum_probs=157.6

Q ss_pred             eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCCC---ceEEecc-hHHHHH
Q 024619           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKAD---RALCFTS-GMAALA   84 (265)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~~~-g~~al~   84 (265)
                      ..+|+|+.++..++  +|+.+..+....   ..++.+.|++. |.+ +++++.+++.+..|.+   +.+++++ +++++.
T Consensus        28 ~~vI~l~~G~p~~~--~p~~i~~~~~~~---~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al~  102 (375)
T d1o4sa_          28 EDVINLTAGEPDFP--TPEPVVEEAVRF---LQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALF  102 (375)
T ss_dssp             CCCEECCCSSCSSC--CCHHHHHHHHHH---HTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHH
T ss_pred             CCeEECCCcCCCCC--CCHHHHHHHHHH---HhcCCcCCCCCcCCHHHHHHHHhhhhhccccccccccccccCcHHHHHH
Confidence            45899993332232  223222222111   12345779888 886 5999999999887754   4444444 559986


Q ss_pred             -HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC-------CCHHHHHhhcCCCceEEEEecCCCCccccc
Q 024619           85 -AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPRQQIC  156 (265)
Q Consensus        85 -~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~~~~~~~~i~~~~~~np~G~~~  156 (265)
                       ++..++++||.|++++|.|+.+....    ...+.....++.       .+.+.++....++++++++++|+||||.+.
T Consensus       103 ~~~~~l~~~gd~vlv~~P~y~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nP~NPTG~~~  178 (375)
T d1o4sa_         103 NAFMALLDPGDEVIVFSPVWVSYIPQI----ILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVY  178 (375)
T ss_dssp             HHHHHHCCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEESSCTTTCCCC
T ss_pred             HHHHHHhCCCCEEEEccCccccchhhh----hccccccccccccccccccchhHHHHHhhccCccEEEEeCCCCCccCCC
Confidence             77889999999999999999997443    445556665543       378888888889999999999999999996


Q ss_pred             c---HHHHHHHHHHcCCEEEEeCCcCCCCCc--------CCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHH
Q 024619          157 D---IRKIAEMAHAHGALLLVDNSIMSPVLS--------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY  225 (265)
Q Consensus       157 ~---l~~i~~~a~~~~~~li~D~~~~~~~~~--------~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~  225 (265)
                      +   +++|+++|++|+++||+||+|+.....        .....+..+++.|+||.+ +.+|+|+||++++++.+.. ..
T Consensus       179 s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~l~G~R~G~~~~~~~~~~~-~~  256 (375)
T d1o4sa_         179 RREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSH-SMTGWRVGYLISSEKVATA-VS  256 (375)
T ss_dssp             CHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTT-TCGGGCCEEEECCHHHHHH-HH
T ss_pred             CHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCCCCCEEEEeechhhc-cCCccccccccccccchhh-hh
Confidence            4   788999999999999999999755442        123446789999999999 6789999999988866544 33


Q ss_pred             HHHHhccCCCChhHHHH
Q 024619          226 FLQNAEGSGLAPFDCWI  242 (265)
Q Consensus       226 ~~~~~~~~~~~~~~~~~  242 (265)
                      .................
T Consensus       257 ~~~~~~~~~~~~~~~~~  273 (375)
T d1o4sa_         257 KIQSHTTSCINTVAQYA  273 (375)
T ss_dssp             HHHHHHTCSCCHHHHHH
T ss_pred             hhhccccccccccchhh
Confidence            44444444444444333

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=99.93  E-value=1e-25  Score=197.18  Aligned_cols=187  Identities=20%  Similarity=0.264  Sum_probs=144.5

Q ss_pred             CCccCCC-CCh-hHHHHHHHHHhHhCCC----ceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCC
Q 024619           46 PYDYTRS-GNP-TRDALESLLAKLDKAD----RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (265)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~~----~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~  117 (265)
                      .++|++. |.+ +|+++++++++.+|.+    +.|++++|+ +|+. ++..++++||.|++++|+|+.+.    ..+...
T Consensus        59 ~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~----~~~~~~  134 (418)
T d2r5ea1          59 ANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYE----PMVKAA  134 (418)
T ss_dssp             GGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHH----HHHHHT
T ss_pred             CcCCCCCCCCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhhhhhhhccccccceeccccccchhh----HHHHHc
Confidence            4569888 886 5999999999988643    456667765 8996 77889999999999999999997    444567


Q ss_pred             CeEEEeecC---------------CCHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcC
Q 024619          118 GVVVKRVNT---------------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIM  179 (265)
Q Consensus       118 g~~~~~~~~---------------~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~  179 (265)
                      |.+++.++.               .+.+++.+...++++++++++||||||.+.+   +++|+++|+++|++||+||+|.
T Consensus       135 g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~  214 (418)
T d2r5ea1         135 GGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYE  214 (418)
T ss_dssp             TCEEEEEECEESCCSSCEEGGGEECCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred             CCeEEEEEecccccccchhhhhhhhhHHHHhhhhhccccceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchh
Confidence            778777653               2578888888889999999999999999965   6889999999999999999997


Q ss_pred             CCCCc---------CCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChh
Q 024619          180 SPVLS---------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF  238 (265)
Q Consensus       180 ~~~~~---------~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~  238 (265)
                      ...+.         .+...+..+++.|+||.+ +.+|+|+||++++++.+ +.+...........+..
T Consensus       215 ~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~-~~pGlRiG~~~~~~~~i-~~~~~~~~~~~~~~~~~  280 (418)
T d2r5ea1         215 HMVFEPFEHIRICTLPGMWERTITIGSAGKTF-SLTGWKIGWAYGPEALL-KNLQMVHQNCVYTCATP  280 (418)
T ss_dssp             TCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHT-TCGGGCCEEEESCHHHH-HHHHHHHTTTTCSCCHH
T ss_pred             hhccCCCccccccccccccceeeeeecCCccc-cCCCcccccccccchhh-hhhhhcccccccccccc
Confidence            54432         111234679999999999 66799999998877655 33334444334444433

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.93  E-value=2.2e-25  Score=192.48  Aligned_cols=228  Identities=19%  Similarity=0.138  Sum_probs=170.4

Q ss_pred             cceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC--CC-hhHHHHHHHHHhHhCCCceEEecchHHHH-H
Q 024619            9 VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS--GN-PTRDALESLLAKLDKADRALCFTSGMAAL-A   84 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~--g~-~~~~~l~~~l~~~~g~~~~i~~~~g~~al-~   84 (265)
                      .+..+++|+ ||||+|+..+|.+........+... .+..-+|.  |+ +..+++|+.+++++|.++.+++++|..|. .
T Consensus        43 ~~~~~~~Fs-SndYLGL~~~p~v~~a~~~al~~yG-~gs~~Sr~~~G~~~~h~~LE~~lA~~~g~e~all~~sG~~An~~  120 (396)
T d2bwna1          43 GKQDITVWC-GNDYLGMGQHPVVLAAMHEALEAVG-AGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDA  120 (396)
T ss_dssp             CEEEEEECS-CSCTTSGGGCHHHHHHHHHHHHHHC-SCCCSBTTTBCCBHHHHHHHHHHHHHTTCSEEEEESCHHHHHHH
T ss_pred             CCeEEEEEE-cccccCcCCCHHHHHHHHHHHHHhC-CCccccccccCCchHHHHHHHHHHHHhCCCceeeeecchHHHHH
Confidence            357899999 9999999999988876533322122 22333444  66 46999999999999999999999999776 4


Q ss_pred             HHHHh--cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcC----CCceEEEEecCCCCccccccH
Q 024619           85 AVTHL--LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG----PWTKLVWVESPTNPRQQICDI  158 (265)
Q Consensus        85 ~~~~~--~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~----~~~~~i~~~~~~np~G~~~~l  158 (265)
                      ++..+  ..++|.|+.+.-.|.+..    ..++..+.+++.+++.|.+++++.+.    .+.++|++++.++++|.+.|+
T Consensus       121 ~i~~l~~~~~~d~i~~D~~~Hasi~----~g~~ls~a~~~~f~Hnd~~~l~~l~~~~~~~~~~~iv~egvySmdGd~apl  196 (396)
T d2bwna1         121 TLSTLRVLFPGLIIYSDSLNHASMI----EGIKRNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPI  196 (396)
T ss_dssp             HHHHHHHHSTTCEEEEETTCCHHHH----HHHHHSCCCEEEECTTCHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCH
T ss_pred             HHHHHhcccCCCceeehhhhhhccc----hhhhccccCceEeecchHHHhhhHHhhhcccCceeEEEEeeccCccccccc
Confidence            66655  578898888888887765    34455677888888888887766653    346688899999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCCCCcCC---------CCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHH-
Q 024619          159 RKIAEMAHAHGALLLVDNSIMSPVLSRP---------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-  228 (265)
Q Consensus       159 ~~i~~~a~~~~~~li~D~~~~~~~~~~~---------~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~-  228 (265)
                      ++|++++++||+++++||+|+.|.++..         .....|++++||+|.+++.    +|++.+++..+ +.+.... 
T Consensus       197 ~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~g~~----Gg~v~~~~~~i-~~l~~~~~  271 (396)
T d2bwna1         197 KEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVF----GGYIAASARMV-DAVRSYAP  271 (396)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSC----CEEEEECHHHH-HHHHHHCH
T ss_pred             HhHHHHhhhhcceeeeccceeeeeeccccccchhhcCCceeeeeeeeccccccccc----ccccchhHHHH-HHHHhhcc
Confidence            9999999999999999999999988622         1235799999999999543    58887766544 4333322 


Q ss_pred             -HhccCCCChhHHHHHHhcc
Q 024619          229 -NAEGSGLAPFDCWICLRGV  247 (265)
Q Consensus       229 -~~~~~~~~~~~~~~~~~~l  247 (265)
                       ......++|......+..+
T Consensus       272 ~~ifStalpp~~~aa~~~al  291 (396)
T d2bwna1         272 GFIFSTSLPPAIAAGAQASI  291 (396)
T ss_dssp             HHHTSBCCCHHHHHHHHHHH
T ss_pred             hhhhcccCcHHHHHHHHHHH
Confidence             2444566666655544433

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.93  E-value=1.3e-25  Score=195.17  Aligned_cols=168  Identities=22%  Similarity=0.209  Sum_probs=136.9

Q ss_pred             CCCccCCC-CCh-hHHHHHHHHHhHhCCC---ceEEecch-HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCC
Q 024619           45 GPYDYTRS-GNP-TRDALESLLAKLDKAD---RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (265)
Q Consensus        45 ~~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~~~g-~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~  117 (265)
                      +.+.|++. |.+ +++++++++.+.+|.+   +.+++++| .+++. ++..++++||+|++++|+|+.+.    ..++..
T Consensus        62 ~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~G~~~~~~~~~~~~~~~Gd~vlv~~P~y~~~~----~~~~~~  137 (395)
T d1xi9a_          62 GHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYT----GLVKFY  137 (395)
T ss_dssp             TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHH----HHHHHT
T ss_pred             CCCCCCCCCCCHHHHHHHHHhhhhcccccccccccccccccchhhhhhhhhhcCCCCEEEEcCCccccch----hhhhhc
Confidence            45679888 886 5999999999998764   45555555 58885 77888999999999999999886    455677


Q ss_pred             CeEEEeecC-------CCHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCcC--
Q 024619          118 GVVVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR--  185 (265)
Q Consensus       118 g~~~~~~~~-------~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~~--  185 (265)
                      |.+++.++.       .|++++++.+.++++++++++||||||.+.+   +++|+++|++++++|+.||+|....+..  
T Consensus       138 g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~  217 (395)
T d1xi9a_         138 GGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEH  217 (395)
T ss_dssp             TCEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCC
T ss_pred             CCEEEEEeccccccccchHHHHHHhhcccccEEEecCCCCCccchhhHHHHHHHHhhhhhcCeeEEeccccccccccccc
Confidence            888888763       3889999999999999999999999999965   6899999999999999999997654421  


Q ss_pred             -----CCCCCccEEEeccccccccCCCceeeEEEeec
Q 024619          186 -----PLELGADIVMHSATKFIAGHSDVMAGVLAVKG  217 (265)
Q Consensus       186 -----~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~  217 (265)
                           ....+..+++.|+||.+ +.+|+|+|+++...
T Consensus       218 ~~~~~~~~~~~vi~~~S~SK~~-~~~GlRvG~~~~~~  253 (395)
T d1xi9a_         218 ISPGSLTKDVPVIVMNGLSKVY-FATGWRLGYMYFVD  253 (395)
T ss_dssp             CCHHHHCSSSCEEEEEESTTTT-CCGGGCCEEEEEEC
T ss_pred             cchhhcCCCCCEEEEeCcchhc-ccchhhcEeeEecC
Confidence                 11234579999999999 56799999987654

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.92  E-value=1.4e-24  Score=189.56  Aligned_cols=169  Identities=19%  Similarity=0.199  Sum_probs=135.8

Q ss_pred             CCCccCCC-CCh-hHHHHHHHHHhHhCC--------C-ceEEecch-HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHH
Q 024619           45 GPYDYTRS-GNP-TRDALESLLAKLDKA--------D-RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLS  111 (265)
Q Consensus        45 ~~~~y~~~-g~~-~~~~l~~~l~~~~g~--------~-~~i~~~~g-~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~  111 (265)
                      ..++|++. |.+ +|+++++++.+.++.        + +.+++++| ++++. ++..++++||+|++++|+|+.+.    
T Consensus        64 ~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~----  139 (412)
T d1bw0a_          64 ECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYE----  139 (412)
T ss_dssp             CSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHH----
T ss_pred             CCCCCCCCcCCHHHHHHHHHHHHHhcCcccccCCCCCCCeEEEecccccchhhhhhhhhccccceeeeeccchhhh----
Confidence            45679988 997 599999999987632        1 35555555 48886 77889999999999999999987    


Q ss_pred             hhcCCCCeEEEeecCC-------CHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCC
Q 024619          112 RVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSP  181 (265)
Q Consensus       112 ~~~~~~g~~~~~~~~~-------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~  181 (265)
                      ..++..|.+++.++++       +++++++...++++++++++|+||||.+.+   +++|+++|++++++||+||+|+.-
T Consensus       140 ~~~~~~G~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~  219 (412)
T d1bw0a_         140 TVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGM  219 (412)
T ss_dssp             HHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTC
T ss_pred             hhhhccCccccccccccccccchhhHHHHhhhhccccccccccccccccccchhhhccccccccccCCeeeechhhHHHh
Confidence            5556788999888742       789999999999999999999999999964   789999999999999999999744


Q ss_pred             CCc---------C---CCCCCccEEEeccccccccCCCceeeEEEeech
Q 024619          182 VLS---------R---PLELGADIVMHSATKFIAGHSDVMAGVLAVKGE  218 (265)
Q Consensus       182 ~~~---------~---~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~  218 (265)
                      .+.         .   .......+++.|+||.+ +.+|+|.|++++++.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~-~~~G~RvG~~~~~~~  267 (412)
T d1bw0a_         220 VFKGKDPNATFTSVADFETTVPRVILGGTAKNL-VVPGWRLGWLLYVDP  267 (412)
T ss_dssp             BCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTT-SCGGGCCEEEEEECT
T ss_pred             ccCCCCCccccccccccccccccccccccCccC-ccCCCCcccccccch
Confidence            331         0   11112458889999999 667899999998764

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=1.9e-24  Score=186.78  Aligned_cols=227  Identities=17%  Similarity=0.166  Sum_probs=173.0

Q ss_pred             ceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC--CC-hhHHHHHHHHHhHhCCCceEEecchHHHH-HH
Q 024619           10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS--GN-PTRDALESLLAKLDKADRALCFTSGMAAL-AA   85 (265)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~--g~-~~~~~l~~~l~~~~g~~~~i~~~~g~~al-~~   85 (265)
                      +.++++|+ +|||+|+..+|.+............ ....-++.  |. +..+++|+.+++++|.++.+++++|.+|. .+
T Consensus        37 g~~~l~f~-s~dYLGl~~~p~v~~a~~~a~~~~G-~~~~~sr~~~g~~~~~~~lE~~LA~~~g~e~al~~~SG~~an~~~  114 (383)
T d1bs0a_          37 DRQYLNFS-SNDYLGLSHHPQIIRAWQQGAEQFG-IGSGGSGHVSGYSVVHQALEEELAEWLGYSRALLFISGFAANQAV  114 (383)
T ss_dssp             TEEEEECS-CCCTTSGGGCHHHHHHHHHHHHHHC-SCCCSBTTTTCCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHH
T ss_pred             CeEEEEEE-cccccccCCCHHHHHHHHHHHHHhC-CCCCccccccCcchHHHHHHHHHHHhcCCCceEEecccchhhHHH
Confidence            45799999 9999999999988776543322111 12233443  55 56999999999999999999999999776 58


Q ss_pred             HHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcC---CCceEEEEecCCCCccccccHHHHH
Q 024619           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG---PWTKLVWVESPTNPRQQICDIRKIA  162 (265)
Q Consensus        86 ~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~---~~~~~i~~~~~~np~G~~~~l~~i~  162 (265)
                      +..+..++|.|+++...|.+..    ..++..+.+++.++..|.+++++.+.   ++..+|+++++++++|.+.|+++|.
T Consensus       115 i~al~~~~d~v~~d~~~h~si~----~g~~~~~~~~~~~~hnd~~~le~~l~~~~~~~~~vv~e~v~s~~G~i~pl~~l~  190 (383)
T d1bs0a_         115 IAAMMAKEDRIAADRLSHASLL----EAASLSPSQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQ  190 (383)
T ss_dssp             HHHHCCTTCEEEEETTCCHHHH----HHHHTSSSEEEEECTTCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCCHHHHH
T ss_pred             HHhhcCCCceEEeeccccHHHh----hccccCCCcceEecchHHHHHHHHhcccCCCceEEEecCCCCCCCcccchhHHH
Confidence            8889999999999999887776    34456778899999999888887763   5577899999999999999999999


Q ss_pred             HHHHHcCCEEEEeCCcCCCCCcCC-------CCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHH--HHhccC
Q 024619          163 EMAHAHGALLLVDNSIMSPVLSRP-------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL--QNAEGS  233 (265)
Q Consensus       163 ~~a~~~~~~li~D~~~~~~~~~~~-------~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~--~~~~~~  233 (265)
                      ++|++||+++++||+|+.|.++..       .....++++.+++|.++++    +|++.+..... +.+...  ......
T Consensus       191 ~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~~~~~~~~t~~ka~g~~----Gg~v~~~~~~~-~~l~~~~~~~~~s~  265 (383)
T d1bs0a_         191 QVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVS----GAAVLCSSTVA-DYLLQFARHLIYST  265 (383)
T ss_dssp             HHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTSSC----CEEEEECHHHH-HHHHHHCHHHHSSB
T ss_pred             HHHHhcCcEEEeecceeeeecCCcccchHHHcCCcccccccccccccccc----ccccccchhHH-HHHHhhchhhhhcc
Confidence            999999999999999999887522       1235678899999998543    58887777544 333322  234445


Q ss_pred             CCChhHHHHHHhcc
Q 024619          234 GLAPFDCWICLRGV  247 (265)
Q Consensus       234 ~~~~~~~~~~~~~l  247 (265)
                      .+++.....++..+
T Consensus       266 ~~~p~~~aa~~~a~  279 (383)
T d1bs0a_         266 SMPPAQAQALRASL  279 (383)
T ss_dssp             CCCHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHH
Confidence            66666554444443

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.92  E-value=9.8e-26  Score=193.19  Aligned_cols=160  Identities=21%  Similarity=0.234  Sum_probs=135.9

Q ss_pred             hhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC------
Q 024619           55 PTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------  127 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------  127 (265)
                      +..+.+++.+++++|.++++++++|++|+. ++.+++++||+|++++++|.+...    .++..|++++.+|++      
T Consensus        47 ~l~~~~~~~~A~~~g~e~~~~t~g~t~a~~~~~~al~~~gd~Vi~~~~~h~s~~~----~~~~~g~~v~~v~~~~~~~~~  122 (364)
T d2e7ja1          47 PIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYV----AAERAGLNIALVPKTDYPDYA  122 (364)
T ss_dssp             CHHHHHHTHHHHHTTSSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHH----HHHHTTCEEEEECCCCTTTCC
T ss_pred             HHHHHHHHHHHHHhCcCEEEEECcHHHHHHHHHHHHhCCCcEEEeecccccccch----HHHhccceEEEeeeccccccc
Confidence            368889999999999999999999999985 778899999999999999987763    345678999988753      


Q ss_pred             -CHHHHHhhcC-----CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEecccc
Q 024619          128 -DLDEVASAIG-----PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATK  200 (265)
Q Consensus       128 -d~~~l~~~~~-----~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK  200 (265)
                       |++++++++.     .++++|++++++||+|.+.|+++|+++|++||+++++|++|+.+.++ +..+.++|++++|+||
T Consensus       123 i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~l~~I~~ia~~~~i~livD~a~~~g~~~~~~~~~g~D~~~~S~~K  202 (364)
T d2e7ja1         123 ITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHK  202 (364)
T ss_dssp             CCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHHTCSEEEEEHHH
T ss_pred             cCHHHHHhhhhhhcccCCceEEEeecCCCCCceeecchhheeccccccchhhccccchhhhhhhcccccccceeeecccc
Confidence             6888888874     34568999999999999999999999999999999999999988775 3445589999999999


Q ss_pred             ccccCCCceeeEEEeechhH
Q 024619          201 FIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       201 ~~~g~~g~~~G~v~~~~~~~  220 (265)
                      +++++++  +|+++.+++.+
T Consensus       203 ~~~~~g~--~g~l~~~~~~~  220 (364)
T d2e7ja1         203 SMAASGP--IGVMGMKEEWA  220 (364)
T ss_dssp             HSSCCSS--CEEEEECTTTT
T ss_pred             ccCCCCC--EEEEEECHHHH
Confidence            9966554  68998887644

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=1.2e-24  Score=189.09  Aligned_cols=230  Identities=18%  Similarity=0.163  Sum_probs=169.9

Q ss_pred             cceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC--CCh-hHHHHHHHHHhHhCCCceEEecchHHHHH-
Q 024619            9 VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS--GNP-TRDALESLLAKLDKADRALCFTSGMAALA-   84 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~--g~~-~~~~l~~~l~~~~g~~~~i~~~~g~~al~-   84 (265)
                      .+.++|+|+ ||||+|+..+|.+..+......... ..+..+|.  |++ ..+++++.+++++|.+.+++++||++|.. 
T Consensus        43 dG~~~l~f~-s~dYLGl~~hp~v~~a~~~a~~~~g-~~~~~sr~~~g~~~~~~~lE~~lA~~~g~e~al~~~SG~~An~~  120 (401)
T d1fc4a_          43 DGSHVINFC-ANNYLGLANHPDLIAAAKAGMDSHG-FGMASVRFICGTQDSHKELEQKLAAFLGMEDAILYSSCFDANGG  120 (401)
T ss_dssp             TSCEEEECC-CSCTTSCTTCHHHHHHHHHHHHHHC-SCCCSCHHHHCCBHHHHHHHHHHHHHHTCSEEEEESCHHHHHHT
T ss_pred             CCCEEEEEE-ccccccccCCHHHHHHHHHHHHHhC-CCcccceeeccCcHHHHHHHHHHHHhhcCCceEEecchhhhhHH
Confidence            356799999 9999999988888776433211111 12233333  664 59999999999999999999999998875 


Q ss_pred             HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcC------CCceEEEEecCCCCccccccH
Q 024619           85 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG------PWTKLVWVESPTNPRQQICDI  158 (265)
Q Consensus        85 ~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~------~~~~~i~~~~~~np~G~~~~l  158 (265)
                      ++..+.+++|.|+++...|.+....    +...+.++..++..|.+++++.+.      ....+|++++.+++.|.+.|+
T Consensus       121 ~i~~l~~~~d~i~~d~~~h~s~~~G----~~~~~a~~~~~~~~d~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~L  196 (401)
T d1fc4a_         121 LFETLLGAEDAIISDALNHASIIDG----VRLCKAKRYRYANNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANL  196 (401)
T ss_dssp             THHHHCCTTCEEEEETTCCHHHHHH----HHTSCSEEEEECTTCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCH
T ss_pred             HHHHhcCCCcEEEeCCcchHHHHcc----ccccCceEEEEcCCChHHHHHHHHHhhhcccCceEEEEcCCCCCCCchhhh
Confidence            7888999999999999999887643    345666777788777777666542      345688889999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCCCCcC---------CCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHH--
Q 024619          159 RKIAEMAHAHGALLLVDNSIMSPVLSR---------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL--  227 (265)
Q Consensus       159 ~~i~~~a~~~~~~li~D~~~~~~~~~~---------~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~--  227 (265)
                      +++.++|+++|+++++||+|+.+.++.         ....++|++++|++|.++|++   +|++.++.+.+ +.+...  
T Consensus       197 ~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~gg~~---Gg~v~g~~~~~-~~l~~~~~  272 (401)
T d1fc4a_         197 KGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGAS---GGYTAARKEVV-EWLRQRSR  272 (401)
T ss_dssp             HHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSS---CEEEEECHHHH-HHHHHHCH
T ss_pred             hHHHHHHhhcCcEEEehhhhccccccCCCCccchhccCCCCCeEEEeecccccccCC---cccccCCHHHH-HHHHcCCh
Confidence            999999999999999999999887752         112358999999999996554   58887766544 433322  


Q ss_pred             HHhccCCCChhHHHHHHhccC
Q 024619          228 QNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      .......+++.........++
T Consensus       273 ~~~~s~~l~p~~~~aa~~~l~  293 (401)
T d1fc4a_         273 PYLFSNSLAPAIVAASIKVLE  293 (401)
T ss_dssp             HHHHSCCCCHHHHHHHHHHHH
T ss_pred             hhhhcCCCCHHHHHHHHhhhc
Confidence            234556666665554444333

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=99.92  E-value=2.1e-24  Score=187.35  Aligned_cols=212  Identities=13%  Similarity=0.118  Sum_probs=154.0

Q ss_pred             eEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCCh-hHHHHHHHHHhHhCCC---ceEEecchH-HHHH-H
Q 024619           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNP-TRDALESLLAKLDKAD---RALCFTSGM-AALA-A   85 (265)
Q Consensus        12 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~-~~~~l~~~l~~~~g~~---~~i~~~~g~-~al~-~   85 (265)
                      .+|+|+ ..|..-+.|+.+.++....    .+.+.++|++ |.+ +++++++++++.+|.+   +.|++++|+ +++. +
T Consensus        32 ~vi~l~-~g~pdf~~p~~v~~al~~~----~~~~~~~Y~~-g~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al~~~  105 (394)
T d1c7na_          32 EVVPLS-VADMEFKNPPELIEGLKKY----LDETVLGYTG-PTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNA  105 (394)
T ss_dssp             TCCCCC-SSSCSSCCCHHHHHHHHHH----HHHCCCSSBC-CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHH
T ss_pred             CeEEcc-CCCCCCCCCHHHHHHHHHH----HhCCCcCCCC-CCHHHHHHHHHHHHHhcCCCCCCcceEeeccchhhhhhh
Confidence            578887 5554322333333332211    1224567864 565 5999999999988764   456555555 9986 7


Q ss_pred             HHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC--------CCHHHHHhhcC-CCceEEEEecCCCCccccc
Q 024619           86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT--------CDLDEVASAIG-PWTKLVWVESPTNPRQQIC  156 (265)
Q Consensus        86 ~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~d~~~l~~~~~-~~~~~i~~~~~~np~G~~~  156 (265)
                      +..+++|||+|++..|.|.++.    ...+..|.+.+.++.        .|.+.++..+. ++++++++++||||||.+.
T Consensus       106 ~~~~~~pgd~vi~~~p~~~~~~----~~~~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~P~NPTG~v~  181 (394)
T d1c7na_         106 VREFTKPGDGVIIITPVYYPFF----MAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVW  181 (394)
T ss_dssp             HHHHCCTTCEEEECSSCCTHHH----HHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCC
T ss_pred             hccccccccccccccCcccchh----hHHhhhhhcccccccccccccccchhhhhhhhhccccceEEEecccccccceec
Confidence            8889999999999999999886    455667778777763        26777777664 6799999999999999996


Q ss_pred             c---HHHHHHHHHHcCCEEEEeCCcCCCCCcC----C-C-----CCCccEEEeccccccccCCCceeeEEEeechhHHHH
Q 024619          157 D---IRKIAEMAHAHGALLLVDNSIMSPVLSR----P-L-----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE  223 (265)
Q Consensus       157 ~---l~~i~~~a~~~~~~li~D~~~~~~~~~~----~-~-----~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~  223 (265)
                      +   +++|+++|++++++||+||+|....+..    . .     .....+++.|+||.+ +.+|+|.|++++++..+.+.
T Consensus       182 s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~-~~~G~R~g~~~~~~~~i~~~  260 (394)
T d1c7na_         182 KKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTF-NIAGMGMSNIIIKNPDIRER  260 (394)
T ss_dssp             CHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHH-TCGGGCCEEEECCCHHHHHH
T ss_pred             cHHHhhhhhccccccceeEeccccccccccCCccccchhhhhcccccceeecccccccc-cccccccccccccChhhhhh
Confidence            5   6889999999999999999997544321    1 1     114569999999999 67889999999988888776


Q ss_pred             HHHHHHhccCC
Q 024619          224 LYFLQNAEGSG  234 (265)
Q Consensus       224 ~~~~~~~~~~~  234 (265)
                      ...........
T Consensus       261 ~~~~~~~~~~~  271 (394)
T d1c7na_         261 FTKSRDATSGM  271 (394)
T ss_dssp             HHHHHHHTTCC
T ss_pred             hhhhhhhcccc
Confidence            66665544443

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=2e-24  Score=185.24  Aligned_cols=199  Identities=16%  Similarity=0.249  Sum_probs=144.7

Q ss_pred             eeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CChhHHHHHHHHHhHhCCC---ceEEecch-HHHHH-HHH
Q 024619           14 MNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLDKAD---RALCFTSG-MAALA-AVT   87 (265)
Q Consensus        14 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~g~~---~~i~~~~g-~~al~-~~~   87 (265)
                      |.|+ ..|..-+.|+++.++....    ...+.++|++. |.++++++++++++.+|.+   +.+++++| ++++. ++.
T Consensus         2 ~~~~-~~~~df~~p~~i~eal~~~----~~~~~~~Y~~~~g~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~   76 (361)
T d1d2fa_           2 LPFT-ISDMDFATAPCIIEALNQR----LMHGVFGYSRWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIR   76 (361)
T ss_dssp             EECC-SSSCSSCCCHHHHHHHHHH----HTTCCCCCCCSCCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHH
T ss_pred             cCcC-CCCCCCCCCHHHHHHHHHH----HhCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhh
Confidence            5565 5555433333333332211    12345678887 5346999999999988754   45555555 58886 778


Q ss_pred             HhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC--------CCHHHHHhhcC-CCceEEEEecCCCCcccccc-
Q 024619           88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT--------CDLDEVASAIG-PWTKLVWVESPTNPRQQICD-  157 (265)
Q Consensus        88 ~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~d~~~l~~~~~-~~~~~i~~~~~~np~G~~~~-  157 (265)
                      .++++||+|++++|+|+.+...    ++..|.+++.++.        .|++.+++.+. ++++++++++|+||||.+.+ 
T Consensus        77 ~l~~~gd~Vlv~~P~y~~~~~~----~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p~NPTG~~~s~  152 (361)
T d1d2fa_          77 QWSETGEGVVIHTPAYDAFYKA----IEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTC  152 (361)
T ss_dssp             HSSCTTCEEEEEESCCHHHHHH----HHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCT
T ss_pred             hccccccccccccccccchhHH----HHhhcceEEeecccccccccccccccchhhcccCCceeEEecccccccccccch
Confidence            8899999999999999988743    3456666666542        37889888885 68999999999999999965 


Q ss_pred             --HHHHHHHHHHcCCEEEEeCCcCCCCCc-------CCCCCCccEEEeccccccccCCCceeeEEEeechhHHH
Q 024619          158 --IRKIAEMAHAHGALLLVDNSIMSPVLS-------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK  222 (265)
Q Consensus       158 --l~~i~~~a~~~~~~li~D~~~~~~~~~-------~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~  222 (265)
                        +++|+++|+++|+++|+||+|+...+.       .....+..+++.|+||.+ +.+|+|+|+++........
T Consensus       153 ~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~v~~~s~SK~~-~~~g~R~g~~~~~~~~~~~  225 (361)
T d1d2fa_         153 DELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSF-NIPALTGAYGIIENSSSRD  225 (361)
T ss_dssp             THHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEEEECSHHHH-TCGGGCCEEEEECSHHHHH
T ss_pred             hhhhhhhhhhhhhheeeeeccccccccccccccccccccccccccccccccccc-ccccccceeeecchhHHHH
Confidence              789999999999999999999855432       112234568999999999 6678999999877654433

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=6.6e-24  Score=183.73  Aligned_cols=180  Identities=23%  Similarity=0.326  Sum_probs=141.2

Q ss_pred             CCCccCCC-CChh-HHHHHHHHHhHhCCC---ceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCC
Q 024619           45 GPYDYTRS-GNPT-RDALESLLAKLDKAD---RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (265)
Q Consensus        45 ~~~~y~~~-g~~~-~~~l~~~l~~~~g~~---~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~  117 (265)
                      ..+.|++. |.+. ++++++++.+.+|.+   +.+++++|+ +++. ++..++++||.|++++|.|+.+.    ..++..
T Consensus        56 ~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~~~~~~l~~~gd~V~i~~P~y~~~~----~~~~~~  131 (389)
T d2gb3a1          56 EVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYN----AFAKIA  131 (389)
T ss_dssp             SSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHH----HHHHHH
T ss_pred             CCCCCCCCcCCHHHHHHHHHHHHHhcCCCcccceEEecccccccccccccccccCCCeEEEeCCCCcccc----cccccc
Confidence            46779888 8974 999999999987754   456666665 8886 67788999999999999999887    444566


Q ss_pred             CeEEEeecCC------CHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCcC---
Q 024619          118 GVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR---  185 (265)
Q Consensus       118 g~~~~~~~~~------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~~---  185 (265)
                      |.+++.++.+      +.+.+.+.+.++++++++++|+||||.+.+   +++|+++|++++++||+||+|+......   
T Consensus       132 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~  211 (389)
T d2gb3a1         132 GVKLIPVTRRMEEGFAIPQNLESFINERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFA  211 (389)
T ss_dssp             TCEEEEEECCGGGTSCCCTTGGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCC
T ss_pred             CccccccccccccccchhhhhhhhcccCccEEEeCCCCccccccchHHHHHHHHhhcccCCEEEEEeccccccccccccc
Confidence            7777777643      345566667788999999999999999965   7999999999999999999997544321   


Q ss_pred             ---CCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHH
Q 024619          186 ---PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN  229 (265)
Q Consensus       186 ---~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~  229 (265)
                         ....+..+++.|+||.+ +.+|+|+||++++++.+.........
T Consensus       212 ~~~~~~~~~~~v~~s~sK~~-~~~GlRiG~~~~~~~~i~~~~~~~~~  257 (389)
T d2gb3a1         212 SALSIESDKVVVIDSVSKKF-SACGARVGCLITRNEELISHAMKLAQ  257 (389)
T ss_dssp             CGGGSCCTTEEEEEESTTTT-TCGGGCCEEEECSCHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccc-cCcccceeeeeccchhHHHHHhhhhh
Confidence               12335678899999999 56889999999988776665544444

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=99.91  E-value=2.4e-23  Score=182.50  Aligned_cols=179  Identities=17%  Similarity=0.240  Sum_probs=137.5

Q ss_pred             CccCCC-CCh-hHHHHHHHHHhHhCC----C-ceEEecch-HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCC
Q 024619           47 YDYTRS-GNP-TRDALESLLAKLDKA----D-RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (265)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~~l~~~~g~----~-~~i~~~~g-~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~  117 (265)
                      ..|++. |.+ +|+++++++.+.+|.    + +.+++++| ++++. ++..++++||.|++++|+|+.+..   .+....
T Consensus        77 ~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~---~~~~~~  153 (428)
T d1iaya_          77 ANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNR---DLRWRT  153 (428)
T ss_dssp             HHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHH---HTTTTT
T ss_pred             ccCcCCcchHHHHHHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHHHhCCCCCEEEEccCCchHHHH---HHHHhc
Confidence            468888 997 599999999998763    2 35555655 58886 778889999999999999999973   233356


Q ss_pred             CeEEEeecCC-------CHHHHHhh------cCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCC
Q 024619          118 GVVVKRVNTC-------DLDEVASA------IGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSP  181 (265)
Q Consensus       118 g~~~~~~~~~-------d~~~l~~~------~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~  181 (265)
                      |++++.++.+       |++++..+      ..++++++++++|+||||.+.+   +++|+++|++||++||+||+|+..
T Consensus       154 g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~  233 (428)
T d1iaya_         154 GVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAAT  233 (428)
T ss_dssp             CCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGG
T ss_pred             CCeEEEeecccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEeccccccc
Confidence            8899888753       56665443      3467899999999999999965   789999999999999999999754


Q ss_pred             CCcC----------------CCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHH
Q 024619          182 VLSR----------------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN  229 (265)
Q Consensus       182 ~~~~----------------~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~  229 (265)
                      .+..                ....+..+++.|+||.+ +.+|+|+|+++..++.+.+.......
T Consensus       234 ~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~-~~~GlRiG~~~~~~~~l~~~~~~~~~  296 (428)
T d1iaya_         234 VFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDM-GLPGFRVGIIYSFNDDVVNCARKMSS  296 (428)
T ss_dssp             CCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTS-SCGGGCEEEEEESCHHHHHHHHHHHT
T ss_pred             ccCcccccccccccchhhccccccceEEEEecCCCcc-cCCCcccccccccccchhhhhhhhhc
Confidence            3321                11224568999999999 66889999999887777665544433

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=99.91  E-value=1.7e-24  Score=188.39  Aligned_cols=173  Identities=18%  Similarity=0.139  Sum_probs=132.4

Q ss_pred             CCccCCC-CCh-hHHHHHHHHHhHhCCC---ceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC
Q 024619           46 PYDYTRS-GNP-TRDALESLLAKLDKAD---RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG  118 (265)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g  118 (265)
                      .++|++. |.+ +++++++++.+.+|.+   +.+++++|+ +++. ++..++++||.|++++|+|+.+.    ..++..|
T Consensus        64 ~~~Y~~~~G~~~lR~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~~gd~v~~~~P~y~~~~----~~~~~~g  139 (403)
T d1wsta1          64 ALQYGTTKGFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFLNPGDPIVVEAPTYLAAI----QAFKYYD  139 (403)
T ss_dssp             HHSCCCSSCCHHHHHHHHHHHHHHHCCCCTTCEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHH----HHHHTTC
T ss_pred             ccCCCCCcCCHHHHHHHHHHHHHHhCCCCChHHeeecccchHHHHHHHHHHhhcCCccccCCCcchhhh----HHHhhcc
Confidence            3679988 897 4999999999887753   456666665 8886 67788999999999999999987    4557788


Q ss_pred             eEEEeecCCC----H-------HHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc
Q 024619          119 VVVKRVNTCD----L-------DEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS  184 (265)
Q Consensus       119 ~~~~~~~~~d----~-------~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~  184 (265)
                      .+++.++.++    .       +...+..++...++++++|+||||.+.+   +++|+++|++||++||+||+|....+.
T Consensus       140 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~  219 (403)
T d1wsta1         140 PEFISIPLDDKGMRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYS  219 (403)
T ss_dssp             CEEEEEEEETTEECHHHHHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCS
T ss_pred             ccceeEeecccCCccccccccchhhhhccccccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecC
Confidence            8888887541    1       1222233345667888999999999965   688999999999999999999743321


Q ss_pred             --------CCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHH
Q 024619          185 --------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL  224 (265)
Q Consensus       185 --------~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~  224 (265)
                              .....+..++++|+||++ + +|+|+||++++++.+....
T Consensus       220 ~~~~~~~~~~~~~~~~i~~~S~SK~~-~-~G~RiG~~i~~~~~i~~~~  265 (403)
T d1wsta1         220 GEPTPPIKHFDDYGRVIYLGTFSKIL-A-PGFRIGWVAAHPHLIRKME  265 (403)
T ss_dssp             SCCCCCGGGGCSSSCEEEEEESTTTT-C-GGGCCEEEEECHHHHHHHH
T ss_pred             CCCCCcccccCCCCcEEEEcccccee-c-CcccccccccchHHHHHHH
Confidence                    122446789999999998 5 6899999998776654433

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=2.2e-23  Score=180.08  Aligned_cols=220  Identities=19%  Similarity=0.229  Sum_probs=158.2

Q ss_pred             eEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCCC----ceEEecchH-HHHH
Q 024619           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKAD----RALCFTSGM-AALA   84 (265)
Q Consensus        12 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~~----~~i~~~~g~-~al~   84 (265)
                      .+|+|+.+...+.  +|+.++.+. ..  ....+.++|++. |.+ +|+++++++.+.+|.+    ..+++++|+ +++.
T Consensus        27 ~~i~l~~G~Pd~~--~p~~i~~a~-~~--~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~  101 (382)
T d1u08a_          27 QAINLSQGFPDFD--GPRYLQERL-AH--HVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALY  101 (382)
T ss_dssp             TCEECCCSSCSSC--CCHHHHHHH-HH--HHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHH
T ss_pred             CCEEccCCCCCCC--CCHHHHHHH-HH--HHhcCCCCCCCCcCCHHHHHHHHHHHHHHhCCCCCCCceEEeccchHHHHH
Confidence            4689984444333  233332221 11  112246789888 887 5999999999988743    346666665 8886


Q ss_pred             -HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC------CCHHHHHhhcCCCceEEEEecCCCCcccccc
Q 024619           85 -AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT------CDLDEVASAIGPWTKLVWVESPTNPRQQICD  157 (265)
Q Consensus        85 -~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~------~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~  157 (265)
                       +++.++++||.|++++|.|+.+..    .....|.+++.++.      .|.+++++.+.++++++++++|+||||.+.+
T Consensus       102 ~~~~~l~~~gd~vl~~~p~y~~~~~----~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~v~~  177 (382)
T d1u08a_         102 AAITALVRNGDEVICFDPSYDSYAP----AIALSGGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTPHNPSATVWQ  177 (382)
T ss_dssp             HHHHHHCCTTCEEEEEESCCTTHHH----HHHHTTCEEEEEECCTTTCCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCC
T ss_pred             HHHhhcccccceEEEecccccchhh----hhhhccccceecccccccccCCHHHHhhhhccCccEEEECCCCcccccccc
Confidence             788899999999999999999974    34456666665553      3789999999999999999999999999975


Q ss_pred             ---HHHHHHHHHHcCCEEEEeCCcCCCCCcC-----C----CCCCccEEEeccccccccCCCceeeEEEeechhHHHHHH
Q 024619          158 ---IRKIAEMAHAHGALLLVDNSIMSPVLSR-----P----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY  225 (265)
Q Consensus       158 ---l~~i~~~a~~~~~~li~D~~~~~~~~~~-----~----~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~  225 (265)
                         +++|+++|++++++++.|+.|.......     .    ...+..+++.|+||.+ +.+|+|+||++++++.+.. ..
T Consensus       178 ~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~-~~pG~RiG~~v~~~~~~~~-~~  255 (382)
T d1u08a_         178 QADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTY-HMTGWKVGYCVAPAPISAE-IR  255 (382)
T ss_dssp             HHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHT-TCGGGCCEEEECCHHHHHH-HH
T ss_pred             cccchhhhhhhccccceeeeecchhhccccccccccccccccccCcEEEEeeccccc-cCCcccchhhhccchhHHH-HH
Confidence               6888899999999999999987544321     1    1124579999999999 6779999999987765544 44


Q ss_pred             HHHHhccCCCChhHHHH
Q 024619          226 FLQNAEGSGLAPFDCWI  242 (265)
Q Consensus       226 ~~~~~~~~~~~~~~~~~  242 (265)
                      ..........+...+..
T Consensus       256 ~~~~~~~~~~~~~~q~a  272 (382)
T d1u08a_         256 KVHQYLTFSVNTPAQLA  272 (382)
T ss_dssp             HHHHHHTSSCCHHHHHH
T ss_pred             hhhcccccccccccccc
Confidence            44444445555544443

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.3e-23  Score=182.11  Aligned_cols=188  Identities=20%  Similarity=0.223  Sum_probs=144.3

Q ss_pred             CCccCCC-CCh-hHHHHHHHHHhHhCCC----ceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCC
Q 024619           46 PYDYTRS-GNP-TRDALESLLAKLDKAD----RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (265)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~~----~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~  117 (265)
                      .+.|++. |.+ +++++++++.+.+|.+    +.|++++|+ +++. ++..++++||.|++++|.|+.+.    ..+...
T Consensus        57 ~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~~~g~~vlv~~p~~~~y~----~~~~~~  132 (418)
T d1w7la_          57 LNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYE----PMTMMA  132 (418)
T ss_dssp             GGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHH----HHHHHT
T ss_pred             ccCCCCCcCCHHHHHHHHHHHHHHhCCCCCcccceeeccCcHHHHHHHHHhhccCCceeeccccccchhH----HHHHHc
Confidence            4569888 887 5999999999988765    356677765 8886 77889999999999999999997    444566


Q ss_pred             CeEEEeecC-----------------CCHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCC
Q 024619          118 GVVVKRVNT-----------------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNS  177 (265)
Q Consensus       118 g~~~~~~~~-----------------~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~  177 (265)
                      |.+++.++.                 .|.+++.....++++++++++|+||||.+.+   +++|+++|+++++++|+||+
T Consensus       133 g~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~  212 (418)
T d1w7la_         133 GGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEV  212 (418)
T ss_dssp             TCEEEEEECEECC---CCSEEGGGEECCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECT
T ss_pred             CCEeeccccccccccccccccccCcccchhhhhccccccccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhh
Confidence            777666542                 1567777777888999999999999999964   78999999999999999999


Q ss_pred             cCCCCCc-----CC----CCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhH
Q 024619          178 IMSPVLS-----RP----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFD  239 (265)
Q Consensus       178 ~~~~~~~-----~~----~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (265)
                      |....+.     ..    ...+..+++.|+||.+ +.+|+|+||++++++.+ ..+...........+...
T Consensus       213 Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~pG~RvG~~v~~~~~~-~~l~~~~~~~~~~~~~~~  281 (418)
T d1w7la_         213 YQWMVYDGHQHISIASLPGMWERTLTIGSAGKTF-SATGWKVGWVLGPDHIM-KHLRTVHQNSVFHCPTQS  281 (418)
T ss_dssp             TTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHT-TCGGGCCEEEECCHHHH-HHHHHHHHTTTSCCCHHH
T ss_pred             hHHhhcCCCCCCCHHHccccccccceecccCccc-cCCCCcccccccchhhh-hhhccccccccccccchh
Confidence            9754332     11    1224679999999998 56789999999877544 444455554445555443

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=99.90  E-value=4.3e-23  Score=181.06  Aligned_cols=175  Identities=20%  Similarity=0.243  Sum_probs=135.3

Q ss_pred             CccCCC-CCh-hHHHHHHHHHhHhCC----C-ceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCC
Q 024619           47 YDYTRS-GNP-TRDALESLLAKLDKA----D-RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (265)
Q Consensus        47 ~~y~~~-g~~-~~~~l~~~l~~~~g~----~-~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~  117 (265)
                      ..|++. |.+ +++++++++.+++|.    + +.|++++|+ +++. ++..+++|||+|++++|.|+.+...   .....
T Consensus        78 ~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~~~~~---~~~~~  154 (431)
T d1m7ya_          78 ALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRD---LKWRT  154 (431)
T ss_dssp             HHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHH---TTTTT
T ss_pred             cCCcCCcCcHHHHHHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCchhHHHH---HHHhc
Confidence            468888 887 599999999998763    2 466666665 8886 7788899999999999999988632   22345


Q ss_pred             CeEEEeecCC-------CHHHHHhhcC------CCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCC
Q 024619          118 GVVVKRVNTC-------DLDEVASAIG------PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSP  181 (265)
Q Consensus       118 g~~~~~~~~~-------d~~~l~~~~~------~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~  181 (265)
                      |++++.++.+       |++.+++.+.      .+++++++++|+||||.+.+   +++|+++|+++|++||+||+|+..
T Consensus       155 g~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~  234 (431)
T d1m7ya_         155 GVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGT  234 (431)
T ss_dssp             CCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGG
T ss_pred             CceeccccccchhcccccHHHhhhhhhhhhhccCcceEEEecCccccccccccccccccccccccccCcceeeccccccc
Confidence            7888888743       5667666553      46889999999999999965   789999999999999999999744


Q ss_pred             CCcC------------------CCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHH
Q 024619          182 VLSR------------------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY  225 (265)
Q Consensus       182 ~~~~------------------~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~  225 (265)
                      .+..                  ....+..+++.|+||.+ +.+|+|+|+++.+++.+.....
T Consensus       235 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~-~~~G~RiG~~~~~~~~i~~~~~  295 (431)
T d1m7ya_         235 AFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDL-GLPGFRVGAIYSNDDMVVAAAT  295 (431)
T ss_dssp             CCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSS-CCGGGCEEEEEESCHHHHHHHH
T ss_pred             ccCCCCCCCHHHHhhhcccccccccCceEEEEecCcccc-cCCCCccceeccchhhhHHHHH
Confidence            3321                  01123569999999999 6788999999998876655433

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=3.9e-23  Score=177.53  Aligned_cols=212  Identities=19%  Similarity=0.212  Sum_probs=147.7

Q ss_pred             eEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CChhHHHHHHHHHhHhCCC--ceEEecchHHHHH-HHH
Q 024619           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLDKAD--RALCFTSGMAALA-AVT   87 (265)
Q Consensus        12 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~g~~--~~i~~~~g~~al~-~~~   87 (265)
                      .+|+|+ ..++..+ +||.+..+.....  .  ....|++. |.+.   +++.+++.++.+  ++++++++++++. ++.
T Consensus        26 ~~I~ls-~g~p~~~-~p~~i~~al~~~l--~--~~~~Y~~~~G~~e---lr~aiA~~~~~~~~~Iiit~G~~~al~~~~~   96 (368)
T d1v2da_          26 GAVNLG-QGFPSNP-PPPFLLEAVRRAL--G--RQDQYAPPAGLPA---LREALAEEFAVEPESVVVTSGATEALYVLLQ   96 (368)
T ss_dssp             TCEECC-CCSCSSC-CCHHHHHHHHHHT--T--TSCSCCCTTCCHH---HHHHHHHHHTSCGGGEEEESSHHHHHHHHHH
T ss_pred             CCEEec-CCCCCCC-CCHHHHHHHHHHh--h--cccCCCCCcCCHH---HHHHHHhhcccCCcceeeccchHHHHHHHhh
Confidence            378998 4443222 2333333221111  1  23578877 7653   344455566666  4555555569986 778


Q ss_pred             HhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC--------CCHHHHHhhcCCCceEEEEecCCCCcccccc--
Q 024619           88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT--------CDLDEVASAIGPWTKLVWVESPTNPRQQICD--  157 (265)
Q Consensus        88 ~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~--  157 (265)
                      .++++||.|++++|+|+.+...+    +..|.+++.+++        .|.+++++++.++++++++++|+||||.+.+  
T Consensus        97 ~l~~~~d~v~~~~p~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~p~NPtG~~~~~~  172 (368)
T d1v2da_          97 SLVGPGDEVVVLEPFFDVYLPDA----FLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGER  172 (368)
T ss_dssp             HHCCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEECEEETTEEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHH
T ss_pred             ccccccccccccCCcchhhhhHH----HhcCCccceeccccccccccCCHHHHHHhhccCceEEEEcCCCCcccccCCHH
Confidence            88999999999999999997443    455666665553        3899999999999999999999999999975  


Q ss_pred             -HHHHHHHHHHcCCEEEEeCCcCCCCCcCCC------CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHh
Q 024619          158 -IRKIAEMAHAHGALLLVDNSIMSPVLSRPL------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA  230 (265)
Q Consensus       158 -l~~i~~~a~~~~~~li~D~~~~~~~~~~~~------~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~  230 (265)
                       +++|+++|++||+++++||+|+........      ..+..+++.|+||.+ +.+|+|.|+++.+++.+.. .......
T Consensus       173 ~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~-~~~G~R~g~~~~~~~~~~~-~~~~~~~  250 (368)
T d1v2da_         173 ELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRL-EATGYRVGWIVGPKEFMPR-LAGMRQW  250 (368)
T ss_dssp             HHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHT-TCGGGCCEEEECCTTTHHH-HHHHHHH
T ss_pred             HHHHHHHHHHHcCCeeeechhhhhhcccccccccccccccccceeecccccc-cccccccccccccccccch-hhhhhhc
Confidence             788999999999999999999855443211      224568889999988 6679999999887765544 4444444


Q ss_pred             ccCCCChh
Q 024619          231 EGSGLAPF  238 (265)
Q Consensus       231 ~~~~~~~~  238 (265)
                      .....+..
T Consensus       251 ~~~~~~~~  258 (368)
T d1v2da_         251 TSFSAPTP  258 (368)
T ss_dssp             HTSSCCHH
T ss_pred             cccccccc
Confidence            44444443

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=1e-23  Score=184.46  Aligned_cols=221  Identities=14%  Similarity=0.118  Sum_probs=149.1

Q ss_pred             ceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCCC----ceEEecchH-HH
Q 024619           10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKAD----RALCFTSGM-AA   82 (265)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~~----~~i~~~~g~-~a   82 (265)
                      +..+|+|+.+.......|.+.++..............++|++. |.+ +++++++++.+.+|.+    +.+++++|+ ++
T Consensus        37 ~~~~I~l~~G~Pd~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~~a  116 (420)
T d1vp4a_          37 DKDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQA  116 (420)
T ss_dssp             STTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHH
T ss_pred             CCCcEecCCcCCCCccCCHHHHHHHHHHHHhhCCccccCCCCCcCCHHHHHHHHHHHHHHhCCCCCCHHHeEeccchhhh
Confidence            4568999833222222333333332211111011123579888 897 5999999999988643    466666665 88


Q ss_pred             HH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC----CHHHHHhhc---------CCCceEEEEecC
Q 024619           83 LA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLDEVASAI---------GPWTKLVWVESP  148 (265)
Q Consensus        83 l~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~~---------~~~~~~i~~~~~  148 (265)
                      +. ++..++++||.|++++|.|+.+.    ..++..|.+++.++.+    +++.+...+         .+.+.++++++|
T Consensus       117 l~~~~~~~~~~Gd~Vlv~~P~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p  192 (420)
T d1vp4a_         117 LDLIGKLFLDDESYCVLDDPAYLGAI----NAFRQYLANFVVVPLEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNF  192 (420)
T ss_dssp             HHHHHHHHCCTTCEEEEEESCCHHHH----HHHHTTTCEEEEEEEETTEECHHHHHHHHHHHHHTTCGGGEEEEEEECSS
T ss_pred             HHHHHHhhhccccccccccccccchh----HHHHHHhhhcccccccccccccchhhhhhhhhHHHhhccccceeeEecCC
Confidence            86 67778999999999999999887    5557788888888754    444443221         123446678999


Q ss_pred             CCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCcC--------CCCCCccEEEeccccccccCCCceeeEEEeec
Q 024619          149 TNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR--------PLELGADIVMHSATKFIAGHSDVMAGVLAVKG  217 (265)
Q Consensus       149 ~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~~--------~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~  217 (265)
                      +||||.+.+   +++|+++|+++++++|+||+|+...+..        ....+..++++|++|++ + +|+|+||+++++
T Consensus       193 ~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~s~sk~~-~-~G~RiG~~~~~~  270 (420)
T d1vp4a_         193 HNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVL-A-PGLRIGMVAGSK  270 (420)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTT-C-GGGCEEEEECCH
T ss_pred             CCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCcccccccccccccceeEEecccccc-c-cccccccccccc
Confidence            999999964   7899999999999999999998544421        11235678889999987 4 689999999877


Q ss_pred             hhHHHHHHHHHHhccCCCCh
Q 024619          218 ERLAKELYFLQNAEGSGLAP  237 (265)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~  237 (265)
                      +.+.. +...........+.
T Consensus       271 ~~i~~-l~~~~~~~~~~~~~  289 (420)
T d1vp4a_         271 EFIRK-IVQAKQSADLCSPA  289 (420)
T ss_dssp             HHHHH-HHHHHHHHHSSCCH
T ss_pred             hhhhh-hhhhhhhccccCch
Confidence            65544 33444443344443

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.89  E-value=8e-23  Score=175.64  Aligned_cols=195  Identities=19%  Similarity=0.190  Sum_probs=144.2

Q ss_pred             HHHHHHHHHhHhCCC---ceEEecchHHHHH-HHHHhcCCCCEEEE--cCCCCCChHHHHHhhcCCCCeEEEeecCCCHH
Q 024619           57 RDALESLLAKLDKAD---RALCFTSGMAALA-AVTHLLGTGEEIVA--GDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLD  130 (265)
Q Consensus        57 ~~~l~~~l~~~~g~~---~~i~~~~g~~al~-~~~~~~~~g~~viv--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~  130 (265)
                      .+++++...+.++.+   +++++++|++|+. ++++ +.+|+.|++  +.|+|+++...    ++..|+++  ++.+|++
T Consensus        52 ~~~l~~~~~~~~~~~~~e~~~~~~~~~~a~~~~l~a-l~~~~~vi~~~~~~~~~~~~~~----~~l~g~~~--v~~~d~e  124 (366)
T d2aeua1          52 AEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILA-LKPKKVIHYLPELPGHPSIERS----CKIVNAKY--FESDKVG  124 (366)
T ss_dssp             HHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHH-HCCSEEEEECSSSSCCTHHHHH----HHHTTCEE--EEESCHH
T ss_pred             HHHHHHHHHHHccCCCccEEEEeCCHHHHHHHHHHH-hCCCCEEEEecCCCcchhHHHH----HHhcCCeE--ECCCCHH
Confidence            556666666666543   5677777888886 5555 456666554  35899988744    45567775  4566999


Q ss_pred             HHHhhcCCCceEEEEecCCCCcc-ccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-----CCCCCCccEEEecccccccc
Q 024619          131 EVASAIGPWTKLVWVESPTNPRQ-QICDIRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLELGADIVMHSATKFIAG  204 (265)
Q Consensus       131 ~l~~~~~~~~~~i~~~~~~np~G-~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~~~~~~di~~~s~sK~~~g  204 (265)
                      ++++++++++++|++++|+||++ .+.++++|+++|++||+++++||+|+.+.+.     .+...+.|++++|+||+++|
T Consensus       125 ~l~~~i~~~tk~i~~~~p~n~~~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~~~~~~di~~~S~sK~~~g  204 (366)
T d2aeua1         125 EILNKIDKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEG  204 (366)
T ss_dssp             HHHTTCCTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSS
T ss_pred             HHHHhcCCCceEEEEEecCCCCcCCHHHHHHHHHHhccCcEEEEEecCccccccccccCCCHhhcCceEEEecccccccc
Confidence            99999999999999999988754 5689999999999999999999999865442     23355789999999998865


Q ss_pred             CCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccCchH-hhHHHHhhchh
Q 024619          205 HSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA-LRVEKQQVCFF  262 (265)
Q Consensus       205 ~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~  262 (265)
                      +   ++|+++++++.+ +.....+...+...+++.++.+.++|+.+. .+++++.++.+
T Consensus       205 ~---~~G~i~~~~~~i-~~~~~~~~~~g~~~~~~~~~a~~~aL~tl~~~r~~~~~~~~~  259 (366)
T d2aeua1         205 P---RGGLLAGKKELV-DKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAK  259 (366)
T ss_dssp             C---SCEEEEEEHHHH-HHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             c---ceeEEEecHHHH-HHHHHHHhcccccCCHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            4   579999888655 555566666777888888888877776542 34455544443

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=99.88  E-value=4.2e-23  Score=178.02  Aligned_cols=197  Identities=21%  Similarity=0.242  Sum_probs=150.2

Q ss_pred             CCCCCCCCeeeccccccCCCCCCCCCccCCCCC--hhHHHHHHHHHhHhCCC--ceEEecchHHHHH-HHHHh-cCCCCE
Q 024619           22 PYGALSTPLYQTATFKQPSATENGPYDYTRSGN--PTRDALESLLAKLDKAD--RALCFTSGMAALA-AVTHL-LGTGEE   95 (265)
Q Consensus        22 ~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~--~~~~~l~~~l~~~~g~~--~~i~~~~g~~al~-~~~~~-~~~g~~   95 (265)
                      ..|+.|.+++.+..-.......++.+.+.....  ...+++++.+++++|++  ++++++++++++. ++.++ .++||+
T Consensus        15 ~~~~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~i~~~~g~t~a~~~~~~~l~~~~g~~   94 (381)
T d1elua_          15 GQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLDWHQGDE   94 (381)
T ss_dssp             TCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSCCCTTCE
T ss_pred             cccCCCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHhCCCcccEEEECChHHHhhhcchhhhhcCCce
Confidence            466666666554331111111122333322211  24778999999999986  4555556679986 55666 689999


Q ss_pred             EEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-------CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHc
Q 024619           96 IVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH  168 (265)
Q Consensus        96 viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~  168 (265)
                      |+++++.|++....|....+..|++++.++.+       ..+.++++++++++++++++++|+||.+.|+++|.++|+++
T Consensus        95 i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~i~~~t~~v~i~~~~n~tG~~~~~~~I~~l~~~~  174 (381)
T d1elua_          95 ILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMAVCRRH  174 (381)
T ss_dssp             EEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTTTCCBCCHHHHHHHHHHC
T ss_pred             EEEeccccceeeeccccccccccccccccccccccccchHHHHHHhhhcccccccccccccccccccchhhHHHHHHhhc
Confidence            99999999999888878888889999999853       25667888889999999999999999999999999999995


Q ss_pred             ----CCEEEEeCCcCCCCCc-CCCCCCccEEEeccccccccCCCceeeEEEeechhH
Q 024619          169 ----GALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       169 ----~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                          ++++++|++|+.|... +....+.|++++|++||+++|.|+  |+++.++...
T Consensus       175 ~~~~~~~~~vD~~~~~g~~~~~~~~~~~D~~~~s~~K~~~~p~G~--g~l~~~~~~~  229 (381)
T d1elua_         175 QGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGV--GGLYIHGDCL  229 (381)
T ss_dssp             CSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCCCTTC--EEEEECTTTG
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccchh--hHHHhhHHHH
Confidence                5899999999988765 444668999999999999999885  8888777544

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=9e-22  Score=170.28  Aligned_cols=159  Identities=24%  Similarity=0.265  Sum_probs=133.4

Q ss_pred             HHHHHHHHHhHhCCC-ceEEe-cchHHHHH-HHHHh----cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC--
Q 024619           57 RDALESLLAKLDKAD-RALCF-TSGMAALA-AVTHL----LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--  127 (265)
Q Consensus        57 ~~~l~~~l~~~~g~~-~~i~~-~~g~~al~-~~~~~----~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--  127 (265)
                      .+++++.+++++|++ +.|++ +++++++. ++.++    .++||+|++.++.|+++...++ .++..|+++..++.+  
T Consensus        50 ~~~~R~~iA~~lg~~~~~I~~~~~~t~~l~~~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~-~~~~~G~~v~~v~~~~~  128 (391)
T d1p3wa_          50 VDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCR-QLEREGFEVTYLAPQRN  128 (391)
T ss_dssp             HHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTSCHHHHHHHH-HHHHTTCEEEEECCCTT
T ss_pred             HHHHHHHHHHHcCCCCCcEEEECCHHHHHHHHHhhhhhhhcCCCCEEEEeccccchHHHHHH-HHHHcCCEEEEeCCCCC
Confidence            667888999999998 44544 45568875 44433    5799999999999999877664 456679999999864  


Q ss_pred             ---CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEeccccccc
Q 024619          128 ---DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIA  203 (265)
Q Consensus       128 ---d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~~~  203 (265)
                         |+++++++++++|++|++++++||||.+.|+++|+++|+++|+++++|++|+.|..+ +....+.|+++.|.+||+ 
T Consensus       129 ~~~d~~~~~~~i~~~T~lv~is~~~n~tG~~~~~~~I~~~~~~~~~~~ivD~~~~~g~~~~d~~~~~~D~~~~s~~k~~-  207 (391)
T d1p3wa_         129 GIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIY-  207 (391)
T ss_dssp             SCCCHHHHHHHCCTTEEEEECCSBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTBTTBCCCTTTSCCSEEEEESTTTT-
T ss_pred             CeEcHHHHHHhCCCCcEEEEEECCCCCCeeECCHHHHHHHhccCCcEEEEeeccccCCccccchhcccccccccccccc-
Confidence               689999999999999999999999999999999999999999999999999999875 455678999999999998 


Q ss_pred             cCCCceeeEEEeechh
Q 024619          204 GHSDVMAGVLAVKGER  219 (265)
Q Consensus       204 g~~g~~~G~v~~~~~~  219 (265)
                      ||+|.  |+++.+++.
T Consensus       208 g~~g~--g~~~~~~~~  221 (391)
T d1p3wa_         208 GPKGI--GALYVRRKP  221 (391)
T ss_dssp             SCSSC--EEEEECBTT
T ss_pred             CCCce--EEEEEecch
Confidence            77774  877777654

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=99.87  E-value=2.3e-22  Score=174.72  Aligned_cols=171  Identities=12%  Similarity=0.076  Sum_probs=132.4

Q ss_pred             CCccCCC-CCh-hHHHHHHHHHhHhCC---CceEEecch--H----HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhh
Q 024619           46 PYDYTRS-GNP-TRDALESLLAKLDKA---DRALCFTSG--M----AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRV  113 (265)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~---~~~i~~~~g--~----~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~  113 (265)
                      ..+|++. |.+ +|+++.+++.+..+.   ++.++++.+  +    +++. ++..++++||+|++++|+|+.+.    ..
T Consensus        64 ~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~l~~pGd~Vlv~~P~y~~y~----~~  139 (401)
T d7aata_          64 DKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHT----PI  139 (401)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHH----HH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHhccCCcccCcCceEEeccchHHHHHHHHHHhhHhhcCCCceEEEecCCCcchh----hH
Confidence            4579998 997 599999999887753   234433322  1    2343 55678999999999999999997    45


Q ss_pred             cCCCCeEEEeecCC-------CHHHHHhhc---CCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCC
Q 024619          114 TPKTGVVVKRVNTC-------DLDEVASAI---GPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMS  180 (265)
Q Consensus       114 ~~~~g~~~~~~~~~-------d~~~l~~~~---~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~  180 (265)
                      ++..|.+++.++..       +.+.+.+.+   .++++++++++||||||.+++   +++|+++|++|+++||+||+|..
T Consensus       140 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~  219 (401)
T d7aata_         140 FRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQG  219 (401)
T ss_dssp             HHHTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             HHHcCCeEEEEeccccccccccHHHHHHHHhcCCCceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccchh
Confidence            57789999998853       566666665   367899999999999999965   78999999999999999999986


Q ss_pred             CCCcCC-----------CCCCccEEEeccccccccCCCceeeEEEeechhHH
Q 024619          181 PVLSRP-----------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA  221 (265)
Q Consensus       181 ~~~~~~-----------~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~  221 (265)
                      ..+...           ......+++.|+||.+ +.+|+|+|+++++...+.
T Consensus       220 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~-~~~G~RiG~~~~~~~~~~  270 (401)
T d7aata_         220 FASGDINRDAWALRHFIEQGIDVVLSQSYAKNM-GLYGERAGAFTVICRDAE  270 (401)
T ss_dssp             TTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTS-CCGGGCEEEEEEECSSHH
T ss_pred             hhcCCcccchhhhhhhhhhhcccceeEeccccc-eeeccccceeecchHHHH
Confidence            655321           1123458888999998 678999999999876544

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=99.87  E-value=1.7e-21  Score=166.40  Aligned_cols=220  Identities=15%  Similarity=0.167  Sum_probs=144.3

Q ss_pred             eEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCC-ceEEecchH-HHHHHHHHh
Q 024619           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD-RALCFTSGM-AALAAVTHL   89 (265)
Q Consensus        12 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~-~~i~~~~g~-~al~~~~~~   89 (265)
                      .+|+||...+.+|+ ++++.++..  .. ..  ....|+..+.   .++++.+++++|.+ +.|++++|+ +++.++..+
T Consensus        23 ~~idls~~~np~~~-p~~~~~a~~--~~-~~--~~~~Yp~~~~---~~Lr~aia~~~~v~~~~I~~~~g~~~~~~~~~~~   93 (355)
T d1lc5a_          23 QLLDFSANINPLGM-PVSVKRALI--DN-LD--CIERYPDADY---FHLHQALARHHQVPASWILAGNGETESIFTVASG   93 (355)
T ss_dssp             GSEECSSCCCTTCC-CHHHHHHHH--HT-GG--GGGSCCCTTC---HHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHH
T ss_pred             heEEccCCCCCCCC-CHHHHHHHH--HH-HH--HhccCCCCCh---HHHHHHHHHHhCCCHHHEEecccHHHHHHHHHhh
Confidence            58999944466774 223333221  11 11  1234644443   45777778888877 457777776 666655555


Q ss_pred             cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC------CHHHHHhhcCCCceEEEEecCCCCcccccc---HHH
Q 024619           90 LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRK  160 (265)
Q Consensus        90 ~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~  160 (265)
                      +. ++.+++..|.|..+...    ....+.+++.+++.      ..+++.+.+.+++++|++++|+||||.+.+   +++
T Consensus        94 ~~-~~~~~v~~p~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~l~nP~NPtG~~~~~e~l~~  168 (355)
T d1lc5a_          94 LK-PRRAMIVTPGFAEYGRA----LAQSGCEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNPTGLLPERPLLQA  168 (355)
T ss_dssp             HC-CSEEEEEESCCTHHHHH----HHHTTCEEEEEECCGGGTTCCCTTHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHH
T ss_pred             hc-cccccccCCccceeccc----cccccccceeeeeeccCCccceeeeeeccccccceeeeecccCcccccchhhhhhh
Confidence            54 44455667888877633    23344555555542      235577778889999999999999999975   788


Q ss_pred             HHHHHHHcCCEEEEeCCcCCCCCc------CCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCC
Q 024619          161 IAEMAHAHGALLLVDNSIMSPVLS------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG  234 (265)
Q Consensus       161 i~~~a~~~~~~li~D~~~~~~~~~------~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~  234 (265)
                      |+++|++|++++++||+|......      .....+..+++.|+||++ |.+|+|+||++++++.+.......  .....
T Consensus       169 i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~l~GlR~G~~i~~~~~~~~~~~~~--~~~~~  245 (355)
T d1lc5a_         169 IADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFY-AIPGLRLGYLVNSDDAAMARMRRQ--QMPWS  245 (355)
T ss_dssp             HHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTT-TCTTTCCEEEECCCHHHHHHHHHH--SCTTC
T ss_pred             hhhhccccccccccccceeeeeeecccccccccccccceeeccccccc-ccccccccceeccchhhhHHHHhh--cCCcc
Confidence            999999999999999999743321      122345679999999999 678999999998877665544332  22344


Q ss_pred             CChhHHHHHHhccC
Q 024619          235 LAPFDCWICLRGVK  248 (265)
Q Consensus       235 ~~~~~~~~~~~~l~  248 (265)
                      .+......+...++
T Consensus       246 ~~~~~~~~a~~~l~  259 (355)
T d1lc5a_         246 VNALAALAGEVALQ  259 (355)
T ss_dssp             SCHHHHHHHHHGGG
T ss_pred             cccccccccccccc
Confidence            55555555555544

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.86  E-value=4.2e-22  Score=169.03  Aligned_cols=202  Identities=10%  Similarity=0.039  Sum_probs=135.2

Q ss_pred             CCCcceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCCCceEEecchH-HH
Q 024619            6 EPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKADRALCFTSGM-AA   82 (265)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~~~~i~~~~g~-~a   82 (265)
                      ...++..++.++...+.++. ++++..+.....    ....+.|.+. |.+ +++++++++....=..+.|++++|+ ++
T Consensus        14 ~~~~~~d~~~l~~~enp~~~-p~~i~~~~~~~~----~~~~~~~yp~~g~~~Lr~aia~~~~~~~v~~d~I~it~G~~~~   88 (334)
T d2f8ja1          14 YETEKRDKTYLALNENPFPF-PEDLVDEVFRRL----NSDALRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEI   88 (334)
T ss_dssp             CCCCCCCSEECSSCCCSSCC-CHHHHHHHHHHC----CTTGGGSCCCSSCHHHHHHHHHHHTCSSCCGGGEEEEEHHHHH
T ss_pred             ccccCCCceEEECCCCCCCC-CHHHHHHHHHHh----hcchhcCCCCCCcHHHHHHHHHHhcccCCCcceEEecCcchhH
Confidence            33445568888733344432 333333321111    1234444444 775 4777776664432123567777776 77


Q ss_pred             HHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHH
Q 024619           83 LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIA  162 (265)
Q Consensus        83 l~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~  162 (265)
                      +.++   +++||+|++.+|+|+.+.    ..++..|++++.++.++-....+...++++++++++|+||||.+.+.+++.
T Consensus        89 l~~l---~~~~d~v~i~~P~y~~~~----~~~~~~g~~~v~v~~~~~~~~~~~~~~~~~~l~l~nP~NPtG~~~s~~~l~  161 (334)
T d2f8ja1          89 IYVM---MLMFDRSVFFPPTYSCYR----IFAKAVGAKFLEVPLTKDLRIPEVNVGEGDVVFIPNPNNPTGHVFEREEIE  161 (334)
T ss_dssp             HHHH---HHHSSEEEECSSCCHHHH----HHHHHHTCCEEECCCCTTSCCCCCCCCTTEEEEEESSCTTTCCCCCHHHHH
T ss_pred             HHHH---hhhccccccccccccccc----cchhccCCccccccccccccccccccccceEEEecccccccceeecHHHhh
Confidence            7643   345799999999999886    455667999999997643333344457899999999999999999988887


Q ss_pred             HHHHHcCCEEEEeCCcCCCCCc----CCCCCCccEEEeccccccccCCCceeeEEEeechhHH
Q 024619          163 EMAHAHGALLLVDNSIMSPVLS----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA  221 (265)
Q Consensus       163 ~~a~~~~~~li~D~~~~~~~~~----~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~  221 (265)
                      ++ .++++++|+||.|......    .....+..+++.|+||++ +.+|+|+|+++.+++.+.
T Consensus       162 ~~-~~~~~~ii~Dd~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~R~G~~~~~~~~i~  222 (334)
T d2f8ja1         162 RI-LKTGAFVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAF-SLAAQRVGYVVASEKFID  222 (334)
T ss_dssp             HH-HTTTCEEEEECTTGGGTCCCCGGGGGTCSSEEEEEESTTTS-SCTTTCEEEEEECHHHHH
T ss_pred             cc-ccceeEEeecccchhhcccccccccccCceEEEEecCcccc-chhhhhhhhcccchHHHH
Confidence            75 4578999999998543322    233446779999999999 668999999998776553

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=5e-21  Score=166.45  Aligned_cols=162  Identities=17%  Similarity=0.220  Sum_probs=138.7

Q ss_pred             hHHHHHHHHHhHhCCC--ceEEec-chHHHHH-HHHH----hcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC
Q 024619           56 TRDALESLLAKLDKAD--RALCFT-SGMAALA-AVTH----LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC  127 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~~i~~~-~g~~al~-~~~~----~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  127 (265)
                      ..++.++.+++++|+.  +.++++ ++++++. .+..    ...+||+|++.+..|++....|..+++..|++++.+|.+
T Consensus        67 ~~e~~R~~ia~~l~~~~~~~i~~~~~~T~~~~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~  146 (405)
T d1jf9a_          67 KMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLN  146 (405)
T ss_dssp             HHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBC
T ss_pred             HHHHHHHHHHHHcCCCCcccccccCcHHHHHHHHHhcccccccCCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCC
Confidence            3778889999999853  455555 4568875 3333    368899999999999999999988888999999999854


Q ss_pred             -----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEeccccc
Q 024619          128 -----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKF  201 (265)
Q Consensus       128 -----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~  201 (265)
                           |++.+++++.++|++|.+++.+|.+|.+.|+++|+++||++|+++++|.+|+.|... +....++|++++|++||
T Consensus       147 ~~g~~~~~~~~~~i~~~t~lv~~~~v~~~tG~~~pi~~i~~~~~~~g~~~~vD~~q~~g~~~id~~~~~~D~~~~s~hK~  226 (405)
T d1jf9a_         147 PDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKL  226 (405)
T ss_dssp             TTSCBCGGGHHHHCCTTEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGT
T ss_pred             CCCcCCHHHHHHhccCCcEEEEEecCCCcccccCchHHhhhHHHHcCCeeecccceeccccccchhhcCCceeecccccc
Confidence                 789999999999999999999999999999999999999999999999999999886 45577899999999999


Q ss_pred             cccCCCceeeEEEeechhH
Q 024619          202 IAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       202 ~~g~~g~~~G~v~~~~~~~  220 (265)
                      + ||+|  .|+++.+++.+
T Consensus       227 ~-Gp~G--~g~l~v~~~~~  242 (405)
T d1jf9a_         227 Y-GPTG--IGILYVKEALL  242 (405)
T ss_dssp             T-SCSS--CEEEEECHHHH
T ss_pred             c-cCCC--ceeeeechhhh
Confidence            7 7888  48888887543

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=99.85  E-value=1.4e-21  Score=170.19  Aligned_cols=186  Identities=20%  Similarity=0.199  Sum_probs=133.1

Q ss_pred             CCccCCCCChhHHHHHHHHHhHh---C---CC-ceEEecchH-HHHH-HHHHh--------cCCCCEEEEcCCCCCChHH
Q 024619           46 PYDYTRSGNPTRDALESLLAKLD---K---AD-RALCFTSGM-AALA-AVTHL--------LGTGEEIVAGDDLYGGTDR  108 (265)
Q Consensus        46 ~~~y~~~g~~~~~~l~~~l~~~~---g---~~-~~i~~~~g~-~al~-~~~~~--------~~~g~~viv~~~~~~~~~~  108 (265)
                      +|.|.+.......+|++.+++++   |   ++ ..|++++|+ +++. ++.++        ++|||+|+++.|.|+.|..
T Consensus        91 sy~~~~~~~~~~~~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~  170 (425)
T d2hoxa1          91 SYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFRE  170 (425)
T ss_dssp             SSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHH
T ss_pred             ceecCCccccCCHHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccccHHH
Confidence            34444333334456777777665   3   23 358888886 8886 66776        5789999999999999975


Q ss_pred             HHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCC
Q 024619          109 LLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPL  187 (265)
Q Consensus       109 ~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~  187 (265)
                      .. ..   .+.+...++. |.+.++++++++++++++++||||||.+..       +..+++.+|.||+|....+. .+.
T Consensus       171 ~~-~~---~~~~~~~~~~-D~~~~~~~~~~~~~ii~l~sPnNPtG~l~~-------~v~~~~~~I~DEaY~~~~f~~~~~  238 (425)
T d2hoxa1         171 QT-KY---FDKKGYVWAG-NAANYVNVSNPEQYIEMVTSPNNPEGLLRH-------AVIKGCKSIYDMVYYWPHYTPIKY  238 (425)
T ss_dssp             HH-HH---SCBTTEEEEE-EGGGGTTCSCGGGEEEEEESSCTTTCCCCC-------CSSTTCEEEEECTTCSTTTSCCCS
T ss_pred             HH-HH---cCCCCCccCC-CHHHHHhhCCCCceEEEEECCCCCCcchhh-------hhhhCCEEEEeccccCccccchhh
Confidence            43 22   3333223322 678888888899999999999999999842       23358999999999765443 344


Q ss_pred             CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHH
Q 024619          188 ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL  244 (265)
Q Consensus       188 ~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (265)
                      ..+.+|++.|+||.+ |.+|+|.||++++++.+.+...........+.+...+...+
T Consensus       239 ~~~~~Ivl~S~SK~f-glaGlRiGw~i~~~~~i~~~~~~~~~~~~~~vs~~~Q~aa~  294 (425)
T d2hoxa1         239 KADEDILLFTMSKFT-GHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSL  294 (425)
T ss_dssp             CBCCSEEEEEHHHHT-SCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHH
T ss_pred             hcCCeEEEEeCHHhc-cCcchheeeEEeCCHHHHHHHHHhhccCcccCCHHHHHHHH
Confidence            556899999999999 78899999998888888777766666666666655544433

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=1.1e-21  Score=170.12  Aligned_cols=173  Identities=13%  Similarity=0.074  Sum_probs=131.8

Q ss_pred             CCCCccCCC-CChh-HHHHHHHHHhHhCCC---ceEEec-chHH----HHH-HHHHhcCCCCEEEEcCCCCCChHHHHHh
Q 024619           44 NGPYDYTRS-GNPT-RDALESLLAKLDKAD---RALCFT-SGMA----ALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSR  112 (265)
Q Consensus        44 ~~~~~y~~~-g~~~-~~~l~~~l~~~~g~~---~~i~~~-~g~~----al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~  112 (265)
                      .....|++. |.+. |+++++++.+..+..   +.++++ ++++    ++. .+..++++||+|++++|+|+.+.    .
T Consensus        61 ~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~pgd~Vlv~~P~y~~y~----~  136 (397)
T d3tata_          61 HGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHV----A  136 (397)
T ss_dssp             CSSBCCCCTTCCHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHHHHHHHHHHHHHHCSSCCCEECSSCCTTHH----H
T ss_pred             ccCCCCCCcccCHHHHHHHHHHHhhccCCcCCcCcEEEecCchhHHHHHHHHHHhhhcCCCCcceecccCccccH----H
Confidence            345679999 9985 999999998776532   334333 3222    233 45567899999999999999997    5


Q ss_pred             hcCCCCeEEEeecCC-------CHHHHHhhc---CCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcC
Q 024619          113 VTPKTGVVVKRVNTC-------DLDEVASAI---GPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIM  179 (265)
Q Consensus       113 ~~~~~g~~~~~~~~~-------d~~~l~~~~---~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~  179 (265)
                      .++..|.+++.++..       +.+.+.+.+   .++++++++++||||||.+.+   +++|+++|+++++++|+||+|.
T Consensus       137 ~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~  216 (397)
T d3tata_         137 IFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQ  216 (397)
T ss_dssp             HHHTTTCCCEECCCCCTTTSSCCHHHHHHHHTTCCSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCT
T ss_pred             HHHHcCCEEEEEecchhhccccchHHHHHHhhhcccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhhh
Confidence            557789999998853       455555554   367889999999999999965   6899999999999999999998


Q ss_pred             CCCCcC----------CCCCCccEEEeccccccccCCCceeeEEEeechhHH
Q 024619          180 SPVLSR----------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA  221 (265)
Q Consensus       180 ~~~~~~----------~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~  221 (265)
                      ...+..          .......+++.|+||.+ +.+|+|+|+++++...+.
T Consensus       217 ~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~-~~~G~RiG~~~~~~~~~~  267 (397)
T d3tata_         217 GFGAGMEEDAYAIRAIASAGLPALVSNSFSKIF-SLYGERVGGLSVMCEDAE  267 (397)
T ss_dssp             TSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHH-TBTTTCCBCCEEECSSTT
T ss_pred             hhccCCcccchhhhhhhhcCCceEEEecCcccc-cccCccccccccchhHHH
Confidence            665530          11223569999999999 778999999998875543

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.84  E-value=1.7e-20  Score=161.15  Aligned_cols=197  Identities=18%  Similarity=0.224  Sum_probs=152.9

Q ss_pred             hhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHh-cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-----
Q 024619           55 PTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~-~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----  127 (265)
                      +..+++|+.+++++|.+.+++++||++|+. ++.++ +++||+|+++..+|++....+    ...|.+++.++++     
T Consensus        31 ~~v~~~E~~la~~~g~~~ai~~~sgt~Al~~al~al~~~~gdeVi~~~~~~~~~~~ai----~~~g~~pv~~d~~~~~~~  106 (376)
T d1mdoa_          31 PKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNMI----VLLGANPVMVDVDRDTLM  106 (376)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHH----HHTTCEEEEECBCTTTCC
T ss_pred             HHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHhCCCCCCEEEEecccccccccch----hccccceeeecccccccC
Confidence            788999999999999999999999999986 66667 899999999999999887444    5678899988754     


Q ss_pred             -CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCC---CCCCccEEEeccccccc
Q 024619          128 -DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRP---LELGADIVMHSATKFIA  203 (265)
Q Consensus       128 -d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~---~~~~~di~~~s~sK~~~  203 (265)
                       |++++++++.+++++|++.+   ..|...|+++|.++|+++|++||+|++|+.|.....   ...+..++.+..+|.+.
T Consensus       107 ~d~~~l~~~i~~~tkaIi~~h---~~G~~~~~~~i~~i~~~~~i~vIeD~a~a~g~~~~~~~~g~~g~~~~Sf~~~K~l~  183 (376)
T d1mdoa_         107 VTPEHIEAAITPQTKAIIPVH---YAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGARGTAIFSFHAIKNIT  183 (376)
T ss_dssp             BCHHHHHHHCCTTEEEECCBC---GGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEETTSSSEEEEECCTTSSSC
T ss_pred             CCHHHHHHhcCCCCeEEEEeC---CCCCccchhHHHHHHHhcCceEEeccchhccCeeCCeecccccCccccCCCcCCCC
Confidence             89999999999999999654   579999999999999999999999999998875322   22333333344579986


Q ss_pred             cCCCceeeEEEeechhHHHHHHHHHHhc------------------------cCCCChhHHHHHHhccCchHhhHHHHhh
Q 024619          204 GHSDVMAGVLAVKGERLAKELYFLQNAE------------------------GSGLAPFDCWICLRGVKTMALRVEKQQV  259 (265)
Q Consensus       204 g~~g~~~G~v~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~  259 (265)
                      ++.   +|+++.+++.+....+.+...+                        ...++...++....+|+.+.....+..+
T Consensus       184 ~g~---GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aai~~~qL~~~~~~~~~r~~  260 (376)
T d1mdoa_         184 CAE---GGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLDALNARRAA  260 (376)
T ss_dssp             SSS---CEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             CCC---CCEEEEechhHHHHHHhhcccCCcccccccccccccccccchhcccccccchhhhhhhhhhhhhhhHHHHHHhh
Confidence            543   6999999988877665554221                        2335566677788888776555555444


Q ss_pred             ch
Q 024619          260 CF  261 (265)
Q Consensus       260 ~~  261 (265)
                      ++
T Consensus       261 ~~  262 (376)
T d1mdoa_         261 IA  262 (376)
T ss_dssp             HH
T ss_pred             hh
Confidence            43

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=99.84  E-value=3.6e-20  Score=161.29  Aligned_cols=171  Identities=12%  Similarity=0.081  Sum_probs=129.0

Q ss_pred             CCCccCCC-CCh-hHHHHHHHHHhHhCC---Cc-eEEe-cchH-HHHH---HHHHhcCCCCEEEEcCCCCCChHHHHHhh
Q 024619           45 GPYDYTRS-GNP-TRDALESLLAKLDKA---DR-ALCF-TSGM-AALA---AVTHLLGTGEEIVAGDDLYGGTDRLLSRV  113 (265)
Q Consensus        45 ~~~~y~~~-g~~-~~~~l~~~l~~~~g~---~~-~i~~-~~g~-~al~---~~~~~~~~g~~viv~~~~~~~~~~~~~~~  113 (265)
                      ..+.|++. |.+ +|+++.+++.+..+.   ++ .+++ ++|. .++.   .+...+.+||.|++++|.|+.+.    ..
T Consensus        65 ~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~Vlip~P~~~~y~----~~  140 (412)
T d1yaaa_          65 YNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHM----AI  140 (412)
T ss_dssp             CCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHH----HH
T ss_pred             cCCCCCCCCCCHHHHHHHHHHHhcccCccccccceeEEecccchhHHHHHHHHHhccCCCCEEecccccCchhH----HH
Confidence            45679998 997 499999999877653   22 3222 2333 3332   23456889999999999999997    55


Q ss_pred             cCCCCeEEEeecCC-------CHHHHHhhc---CCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCC
Q 024619          114 TPKTGVVVKRVNTC-------DLDEVASAI---GPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMS  180 (265)
Q Consensus       114 ~~~~g~~~~~~~~~-------d~~~l~~~~---~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~  180 (265)
                      ++..|.+++.++..       +.+.+.+.+   .++++++++++||||||.+.+   +++|+++|+++++++|+||+|..
T Consensus       141 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~  220 (412)
T d1yaaa_         141 FENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQG  220 (412)
T ss_dssp             HHTTTCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             HHHcCCceecccccccccccccchhhhcccccCCCceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeecceeee
Confidence            57788888888742       555555554   356788999999999999975   79999999999999999999986


Q ss_pred             CCCcC--------------CCCCCccEEEeccccccccCCCceeeEEEeechhH
Q 024619          181 PVLSR--------------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       181 ~~~~~--------------~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                      ..+..              ....+..+++.|+||.+ +.+|+|+|+++++.+.+
T Consensus       221 l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~-~~~G~RiG~~~~~~~~~  273 (412)
T d1yaaa_         221 FATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNA-GMYGERVGCFHLALTKQ  273 (412)
T ss_dssp             TSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTS-CCGGGCEEEEEEECCSC
T ss_pred             cccCCcccchhhhhhhhhccccCCCeEEEEecCCcc-ccCcCceEEEEEchhhh
Confidence            55531              12234569999999999 77899999999987543

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=99.84  E-value=1.4e-20  Score=163.83  Aligned_cols=173  Identities=16%  Similarity=0.090  Sum_probs=124.7

Q ss_pred             CCCccCCC-CChh-HHHHHHHHHhHhCC----Cc-eEEecch-HHHHH-H---H----HHhcCCCCEEEEcCCCCCChHH
Q 024619           45 GPYDYTRS-GNPT-RDALESLLAKLDKA----DR-ALCFTSG-MAALA-A---V----THLLGTGEEIVAGDDLYGGTDR  108 (265)
Q Consensus        45 ~~~~y~~~-g~~~-~~~l~~~l~~~~g~----~~-~i~~~~g-~~al~-~---~----~~~~~~g~~viv~~~~~~~~~~  108 (265)
                      ..+.|++. |.|. |+++.+++.+..+.    +. .++.+.| +.++. +   +    ..+++|||+|++++|+|+.|..
T Consensus        66 ~~~~Y~p~~G~p~lreaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~  145 (412)
T d1ajsa_          66 LNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNG  145 (412)
T ss_dssp             CCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHH
T ss_pred             cCCCCCCCCCCHHHHHHHHHHHhccCCcccccccceeecccchhhHHHHHHHHHHHHhhhcCCCCCEEEEeCCcchhhHH
Confidence            44679999 9985 99999999876653    32 3333333 34432 1   1    1236999999999999999974


Q ss_pred             HHHhhcCCCCeEEEeec--------CCCHHHHHhh---cCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEE
Q 024619          109 LLSRVTPKTGVVVKRVN--------TCDLDEVASA---IGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLV  174 (265)
Q Consensus       109 ~~~~~~~~~g~~~~~~~--------~~d~~~l~~~---~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~  174 (265)
                      .    ++..|.+.+.++        ..|.+.+++.   ..++++++++++||||||.+.+   +++|+++|++||++||+
T Consensus       146 ~----~~~~G~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~  221 (412)
T d1ajsa_         146 V----FTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFF  221 (412)
T ss_dssp             H----HHHTTCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred             H----HHHcCCeEEEeecccccccccccHHHHHHHHHhccCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEe
Confidence            4    455665544332        1256655554   4578899999999999999975   79999999999999999


Q ss_pred             eCCcCCCCCcC-----------CCCCCccEEEeccccccccCCCceeeEEEeechhHHH
Q 024619          175 DNSIMSPVLSR-----------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK  222 (265)
Q Consensus       175 D~~~~~~~~~~-----------~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~  222 (265)
                      ||+|....+..           .......+++.|+||.+ +.+|+|.|+++........
T Consensus       222 De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~-~~~G~R~G~~~~~~~~~~~  279 (412)
T d1ajsa_         222 DSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNF-GLYNERVGNLTVVAKEPDS  279 (412)
T ss_dssp             EESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTS-CCGGGCEEEEEEECSSHHH
T ss_pred             cHhhhhhhcCCcccchhhhhhhhhhcccccccccccccc-cCCCCCccccccchhHHHH
Confidence            99998655431           11224568889999999 6788999999998765433

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=1.2e-19  Score=154.83  Aligned_cols=158  Identities=18%  Similarity=0.257  Sum_probs=120.7

Q ss_pred             HHHHHHHHhHhCCC-ceEEecchH-HHHH-HHHHhcCCCC-EEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-----C
Q 024619           58 DALESLLAKLDKAD-RALCFTSGM-AALA-AVTHLLGTGE-EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----D  128 (265)
Q Consensus        58 ~~l~~~l~~~~g~~-~~i~~~~g~-~al~-~~~~~~~~g~-~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----d  128 (265)
                      .++++.+++++|.+ +.|++++|+ +++. ++..++++|| .|+++.|+|..+.    ..++..|.+++.++..     |
T Consensus        59 ~~Lr~~ia~~~gv~pe~I~it~Gs~eai~~~~~~~~~pgd~~Vl~~~P~y~~~~----~~~~~~g~~v~~~~~~~~~~~d  134 (354)
T d1fg7a_          59 KAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYS----VSAETIGVECRTVPTLDNWQLD  134 (354)
T ss_dssp             HHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHH----HHHHHHTCEEEECCCCTTSCCC
T ss_pred             HHHHHHHHHHhCCChHHeeeccCchHHHHHHHHHhhccccccccccccccccch----hhhhccCceeeccccccccccc
Confidence            57888888888887 677777776 8886 7788899998 5888999999887    4456678888888743     7


Q ss_pred             HHHHHhhcCCCceEEEEecCCCCccccccH---HHHHHHHHHcCCEEEEeCCcCCCCCc-----CCCCCCccEEEecccc
Q 024619          129 LDEVASAIGPWTKLVWVESPTNPRQQICDI---RKIAEMAHAHGALLLVDNSIMSPVLS-----RPLELGADIVMHSATK  200 (265)
Q Consensus       129 ~~~l~~~~~~~~~~i~~~~~~np~G~~~~l---~~i~~~a~~~~~~li~D~~~~~~~~~-----~~~~~~~di~~~s~sK  200 (265)
                      ++++++.+ +++++|++++|+||||.+.+.   +.+.+.++ ++.++++||+|......     .....+..+++.||||
T Consensus       135 ~~~l~~~~-~~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~-~~~~~iidd~~~~f~~~~~~~~~~~~~~~~iv~~S~SK  212 (354)
T d1fg7a_         135 LQGISDKL-DGVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSK  212 (354)
T ss_dssp             HHHHHTSC-TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSS
T ss_pred             hhhhhhcc-cccceeeccCCCccceeEeeeccccccccccc-ccccccccccchhhccccccchhhcccccceEEeCCcc
Confidence            88888776 579999999999999999764   44444444 57888888887533221     1223456788999999


Q ss_pred             ccccCCCceeeEEEeechhHHH
Q 024619          201 FIAGHSDVMAGVLAVKGERLAK  222 (265)
Q Consensus       201 ~~~g~~g~~~G~v~~~~~~~~~  222 (265)
                      ++ |.+|+|.||++++++.+..
T Consensus       213 ~~-~laGlRiGy~i~~~~~i~~  233 (354)
T d1fg7a_         213 AF-ALAGLRCGFTLANEEVINL  233 (354)
T ss_dssp             TT-CCGGGCCEEEEECHHHHHH
T ss_pred             cc-CCCccccccccccchhhhh
Confidence            99 7789999999987765543

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=1.1e-20  Score=163.81  Aligned_cols=172  Identities=17%  Similarity=0.127  Sum_probs=129.0

Q ss_pred             CCccCCC-CCh-hHHHHHHHHHhHhCC----Cc-eEEec-chHHHHH---HHHHhcCCCCEEEEcCCCCCChHHHHHhhc
Q 024619           46 PYDYTRS-GNP-TRDALESLLAKLDKA----DR-ALCFT-SGMAALA---AVTHLLGTGEEIVAGDDLYGGTDRLLSRVT  114 (265)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~-~i~~~-~g~~al~---~~~~~~~~g~~viv~~~~~~~~~~~~~~~~  114 (265)
                      .+.|++. |.+ +|+++++++.+..+.    +. ..+++ +|..++.   .++..+++||.|++++|.|+.+.    ..+
T Consensus        62 ~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~----~~~  137 (396)
T d2q7wa1          62 TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHK----SVF  137 (396)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHH----HHH
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHhhcCCcccccceeeeccchHHHHHHHHHHHHhhcccceEEEEecCCCccch----HHH
Confidence            4579988 997 599999999887654    22 23333 3334442   34556899999999999999997    555


Q ss_pred             CCCCeEEEeecCC-------CHHHHHh---hcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCC
Q 024619          115 PKTGVVVKRVNTC-------DLDEVAS---AIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSP  181 (265)
Q Consensus       115 ~~~g~~~~~~~~~-------d~~~l~~---~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~  181 (265)
                      +..|.+++.++..       +.+.+.+   ...++++++++++||||||.+.+   +++|+++|++|+++||+||+|+..
T Consensus       138 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l  217 (396)
T d2q7wa1         138 NSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGF  217 (396)
T ss_dssp             HHTTCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTS
T ss_pred             HHcCCeeEecccccccccccccchHHHHHHHhccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEecccccc
Confidence            7788999888753       3343333   34567889999999999999965   689999999999999999999866


Q ss_pred             CCcC----------CCCCCccEEEeccccccccCCCceeeEEEeechhHHH
Q 024619          182 VLSR----------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK  222 (265)
Q Consensus       182 ~~~~----------~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~  222 (265)
                      .+..          .......+++.|++|.+ +.+|+|.|+++++...+..
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~-~~~G~R~G~~~~~~~~~~~  267 (396)
T d2q7wa1         218 ARGLEEDAEGLRAFAAMHKELIVASSYSKNF-GLYNERVGACTLVAADSET  267 (396)
T ss_dssp             SSCHHHHTHHHHHHHHHCSCEEEEEECTTTT-TCGGGCCEEEEEECSSHHH
T ss_pred             ccCCccCchHhhhhhhhcccccccccccccc-cccCCCccccccchhHHHH
Confidence            5531          11224568888999999 6788999999998765543

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=99.83  E-value=1.1e-19  Score=156.81  Aligned_cols=200  Identities=19%  Similarity=0.249  Sum_probs=158.1

Q ss_pred             CChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHh-cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC---
Q 024619           53 GNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (265)
Q Consensus        53 g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~-~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---  127 (265)
                      +.+..+++|+++++++|.+.++.++||++|+. +++++ +++||+|+++..+|++..    ..+...|.+++.++.+   
T Consensus        32 ~g~~v~~fE~~~a~~~g~~~~v~~~SGt~Al~lal~~l~~~~gdeVi~p~~t~~a~~----~ai~~~g~~p~~~d~~~~~  107 (384)
T d1b9ha_          32 GGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMGVGPGTEVIVPAFTFISSS----QAAQRLGAVTVPVDVDAAT  107 (384)
T ss_dssp             TCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHH----HHHHHTTCEEEEECBCTTT
T ss_pred             CCHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHcCCCCCCEEEEecccccccc----ccccccccccccccccccc
Confidence            34789999999999999999999999999986 56666 789999999999999887    4456688999998854   


Q ss_pred             ---CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcC--CCCCCccEEEec--ccc
Q 024619          128 ---DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR--PLELGADIVMHS--ATK  200 (265)
Q Consensus       128 ---d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~--~~~~~~di~~~s--~sK  200 (265)
                         |++.+++.+.+++++|+   +.++.|...|+++|.++|+++++++|+|.+++.|....  ....-.|+.++|  .+|
T Consensus       108 ~~~d~~~~~~~i~~~tk~i~---~~~~~g~~~d~~~i~~~~~~~~i~lieD~a~a~ga~~~g~~~g~~g~~~~~Sf~~~K  184 (384)
T d1b9ha_         108 YNLDPEAVAAAVTPRTKVIM---PVHMAGLMADMDALAKISADTGVPLLQDAAHAHGARWQGKRVGELDSIATFSFQNGK  184 (384)
T ss_dssp             CCBCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGGSSSCEEEECCTTS
T ss_pred             cccchhhhcccccccccccc---cccccccccccccchhhhhhhhhhhhhhhceecccccCCEecCcccccceecccccc
Confidence               89999999999999987   45668889999999999999999999999999887632  222224555555  588


Q ss_pred             ccccCCCceeeEEEeechhHHHHHHHHHHhc-----------------cCCCChhHHHHHHhccCchHhhHHHHhhchh
Q 024619          201 FIAGHSDVMAGVLAVKGERLAKELYFLQNAE-----------------GSGLAPFDCWICLRGVKTMALRVEKQQVCFF  262 (265)
Q Consensus       201 ~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  262 (265)
                      .+.+..   +|+++++++...+..+......                 ...++..++++++.+|+++....++.++++.
T Consensus       185 ~i~~g~---GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~n~rms~l~Aaig~~qL~~ld~~~~~R~~~~~  260 (384)
T d1b9ha_         185 LMTAGE---GGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLDEQIAVRDERWT  260 (384)
T ss_dssp             SSCSSS---CEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             cccccc---cchhhhhhHHHHHHHHHHHhcCCCCccccccccccccccccccccchhhhhhhhhhhcccchhhhhhhhh
Confidence            885443   6999898888777665554321                 1336677888999999988776666666554

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.81  E-value=1e-19  Score=156.40  Aligned_cols=159  Identities=16%  Similarity=0.152  Sum_probs=128.4

Q ss_pred             hHHHHHHHHHhHhCCC--ceEEecchHHHHHH-HH----HhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-
Q 024619           56 TRDALESLLAKLDKAD--RALCFTSGMAALAA-VT----HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-  127 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~~i~~~~g~~al~~-~~----~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-  127 (265)
                      ..++.++.+++++|++  ++++++++++++.. +.    ....+|+.|++....|+.....+ ..++..|++++.+|++ 
T Consensus        45 ~~~~aR~~ia~l~~~~~~~i~~~~~~T~~l~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~-~~~~~~g~~v~~vp~~~  123 (376)
T d1eg5a_          45 HMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETM-KYLSMKGFKVKYVPVDS  123 (376)
T ss_dssp             HHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHH-HHHHHTTCEEEECCBCT
T ss_pred             HHHHHHHHHHHHcCCCCCcEEEECCHHHHHHhhhhcccccccccCcccccccccchhhHHHH-HHHHhcCCEEEEEcCCC
Confidence            3667788999999998  45555555688753 32    34577888888887777776555 4556679999999854 


Q ss_pred             ----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHc--CCEEEEeCCcCCCCCc-CCCCCCccEEEecccc
Q 024619          128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH--GALLLVDNSIMSPVLS-RPLELGADIVMHSATK  200 (265)
Q Consensus       128 ----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~--~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK  200 (265)
                          |++++++++++++++|++++++|+||.+.|++++.++++.+  ++++++|++|+.|..+ +....++|++++|++|
T Consensus       124 ~~~id~~~l~~~i~~~t~lv~is~v~~~tG~~~~~~~i~~~~~~~~~~~~~~vD~~q~~g~~~~d~~~~~~D~~~~s~~K  203 (376)
T d1eg5a_         124 RGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHK  203 (376)
T ss_dssp             TSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGG
T ss_pred             CCeECHHHHHHhcCCCceEEEEECCccccceeeeehhhhhhhhhcccCceeEEEeeeccccccccccccCccceecccce
Confidence                79999999999999999999999999999999999998665  8999999999999886 4556789999999999


Q ss_pred             ccccCCCceeeEEEeech
Q 024619          201 FIAGHSDVMAGVLAVKGE  218 (265)
Q Consensus       201 ~~~g~~g~~~G~v~~~~~  218 (265)
                      |+ ||+|.  |+++.+++
T Consensus       204 ~~-gp~G~--~~l~~~~~  218 (376)
T d1eg5a_         204 FH-GPKGV--GITYIRKG  218 (376)
T ss_dssp             GT-SCTTC--EEEEECTT
T ss_pred             ee-cCCCc--eeEEeccC
Confidence            97 78885  66665543

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=99.81  E-value=2.5e-19  Score=155.76  Aligned_cols=162  Identities=27%  Similarity=0.277  Sum_probs=137.9

Q ss_pred             hHHHHHHHHHhHhCCC--ceEEecchH-HHHHH-HHH----hcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC
Q 024619           56 TRDALESLLAKLDKAD--RALCFTSGM-AALAA-VTH----LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC  127 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~~i~~~~g~-~al~~-~~~----~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  127 (265)
                      ..++.++.+++++|++  +.+++++++ +++.. +..    ..++|++|++.+-.|++....|...++..|.++..++.+
T Consensus        67 ~~e~aR~~ia~llga~~~~~i~~~~~tt~~~n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~  146 (408)
T d1t3ia_          67 AYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLD  146 (408)
T ss_dssp             HHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBC
T ss_pred             HHHHHHHHHHHHhCCCCcccEEeecchHHHHHHHHhhccccccCCCCEEEeecccchhhhhhhhhhhhccCceEeeeecc
Confidence            4778889999999985  556666554 67653 333    367899999999999999988877888889999888743


Q ss_pred             -----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEeccccc
Q 024619          128 -----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKF  201 (265)
Q Consensus       128 -----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~  201 (265)
                           +.+.+++++.+++++|.+++.+|.+|.+.|+++|.++|+++|+++++|.+|+.|..+ +....++|++++|.+||
T Consensus       147 ~~~~~~~~~l~~~~~~~t~lv~i~~~~~~tG~~~p~~~i~~~~~~~g~~~ivDa~q~~g~~~id~~~~~~D~~~~s~hK~  226 (408)
T d1t3ia_         147 EQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKM  226 (408)
T ss_dssp             TTSSBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGT
T ss_pred             ccccccHHHhhhccCCCceEEEEecccccccccCcHHHHhhhhhccCceeeeccceecccccccccccCCceEEeccccc
Confidence                 789999999999999999999999999999999999999999999999999999987 44466899999999999


Q ss_pred             cccCCCceeeEEEeechhH
Q 024619          202 IAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       202 ~~g~~g~~~G~v~~~~~~~  220 (265)
                      + ||+|  +|+++.+++..
T Consensus       227 ~-gp~G--~g~l~v~~~~~  242 (408)
T d1t3ia_         227 C-APTG--IGFLYGKEEIL  242 (408)
T ss_dssp             T-SCTT--CEEEEECHHHH
T ss_pred             c-CCCC--ccccccchhhh
Confidence            6 7888  48888887654

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=5.8e-20  Score=158.95  Aligned_cols=172  Identities=17%  Similarity=0.157  Sum_probs=129.5

Q ss_pred             CCccCCC-CCh-hHHHHHHHHHhHhCCC---ceEEecchHHH--HH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCC
Q 024619           46 PYDYTRS-GNP-TRDALESLLAKLDKAD---RALCFTSGMAA--LA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT  117 (265)
Q Consensus        46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~~~g~~a--l~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~  117 (265)
                      .+.|++. |.| +|+++.+++.+..+..   +.+++++|+++  +. .++.+.++||.|++++|+|+.+.    ..++..
T Consensus        62 ~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gd~V~~p~p~~~~y~----~~~~~~  137 (394)
T d2ay1a_          62 TKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHV----SIMNFM  137 (394)
T ss_dssp             CCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHH----HHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHhccccccccccceeccCchHHHHHHHHHhhhcCCceEEEEecccccchH----HHHHHc
Confidence            4589999 997 5999999998776654   45556655534  44 45667899999999999999997    444667


Q ss_pred             CeEEEeecCC-------CHHHH---HhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc
Q 024619          118 GVVVKRVNTC-------DLDEV---ASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS  184 (265)
Q Consensus       118 g~~~~~~~~~-------d~~~l---~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~  184 (265)
                      |.+++.++..       +.+++   .....++++++++++||||||.+.+   +++|+++|+++++++|+||+|....+.
T Consensus       138 g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~  217 (394)
T d2ay1a_         138 GLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDG  217 (394)
T ss_dssp             TCCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSC
T ss_pred             CCEEEEecccchhcccccchhHHHHHhhcccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhccc
Confidence            7788877642       23333   3334567888899999999999975   789999999999999999999866553


Q ss_pred             C----------CCCCCccEEEeccccccccCCCceeeEEEeechhHHH
Q 024619          185 R----------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK  222 (265)
Q Consensus       185 ~----------~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~  222 (265)
                      .          .......+++.|+||.+ +.+|+|.|++++....+..
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~s~sk~~-~~~G~R~G~~~~~~~~~~~  264 (394)
T d2ay1a_         218 LEEDAAGTRLIASRIPEVLIAASCSKNF-GIYRERTGCLLALCADAAT  264 (394)
T ss_dssp             HHHHHHHHHHHHHHCSSEEEEEECTTTT-TCGGGCEEEEEEECSSHHH
T ss_pred             ccccchhhhhhhhhcccccccccccccc-cCCcccccchhhchhHHHH
Confidence            1          11223457788999998 5678999999988765543

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.80  E-value=1.4e-18  Score=149.25  Aligned_cols=197  Identities=15%  Similarity=0.111  Sum_probs=153.4

Q ss_pred             hhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHh-cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-----
Q 024619           55 PTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~-~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----  127 (265)
                      |..+++|+.+++++|.+.+++++||+.|+. +++++ +++||+|+++..+|++...    .+...|++++.+|++     
T Consensus        21 ~~~~~fE~~~~~~~~~~~~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t~~a~~~----~~~~~g~~pv~~Di~~~~~~   96 (374)
T d1o69a_          21 EFVNRFEQSVKDYSKSENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVA----PICYLKAKPVFIDCDETYNI   96 (374)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTH----HHHHTTCEEEEECBCTTSSB
T ss_pred             HHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHcCCCCcCEEEeCCcchHhhHH----HHhhccceeEeccccccccc
Confidence            779999999999999999999999999986 66666 8899999999999998873    445679999999865     


Q ss_pred             ---CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcC--CCCCCccEEEeccc--c
Q 024619          128 ---DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR--PLELGADIVMHSAT--K  200 (265)
Q Consensus       128 ---d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~--~~~~~~di~~~s~s--K  200 (265)
                         +.+.......+++++|++.+.   .|...++++|.++|+++|++||+|.+|+.|....  ....-.|+.++||+  |
T Consensus        97 ~~~~~~~~~~~~~~~~~aii~~~~---~G~~~d~~~i~~~~~~~~i~vIED~a~a~g~~~~~~~~G~~gd~~~fSf~~~K  173 (374)
T d1o69a_          97 DVDLLKLAIKECEKKPKALILTHL---YGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNK  173 (374)
T ss_dssp             CHHHHHHHHHHCSSCCCEEEEECG---GGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTS
T ss_pred             ccccccccchhccccccccccccc---ccchhhhHHHHHHhhccCcchhhhhhhhhcceECCeecCCCCceEEEeccCcc
Confidence               123344556688999996654   7889999999999999999999999999887532  22223588888875  8


Q ss_pred             ccccCCCceeeEEEeechhHHHHHHHHHHhc--------------cCCCChhHHHHHHhccCchHhhHHHHhhch
Q 024619          201 FIAGHSDVMAGVLAVKGERLAKELYFLQNAE--------------GSGLAPFDCWICLRGVKTMALRVEKQQVCF  261 (265)
Q Consensus       201 ~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  261 (265)
                      .+....   +|+++..++.+.+....+....              ...++...+++.+.+|+++.....+.++++
T Consensus       174 ~l~tge---GG~i~tnn~~~~~~~~~~~~~g~~~~~~~~~~~~G~N~rm~ei~Aaig~~qL~~l~~~i~~r~~i~  245 (374)
T d1o69a_         174 IITTSG---GGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIY  245 (374)
T ss_dssp             SSCCSS---CEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             cccccc---ceeehhhhHHHHHhhccccccccccccccccccCCccccccchhhhhhHHHHhhhhhhcchhHHHH
Confidence            885543   5888898888777666554221              134677888999999998876666555544

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=99.77  E-value=8.6e-18  Score=144.10  Aligned_cols=198  Identities=15%  Similarity=0.120  Sum_probs=155.3

Q ss_pred             hhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHh-cCCC--CEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC---
Q 024619           55 PTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-LGTG--EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~-~~~g--~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---  127 (265)
                      +..+++|+.+++++|.+.+++++||+.|+. +++++ +.+|  ++|+++..+|++...    .....|++++.+|++   
T Consensus        31 ~~v~~fE~~~~~~~g~k~ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~~t~~a~~~----ai~~~G~~pv~vDi~~~~  106 (371)
T d2fnua1          31 KRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATAN----MLLESGYTPVFAGIKNDG  106 (371)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHH----HHHHTTCEEEECCBCTTS
T ss_pred             HHHHHHHHHHHHHHCcCeEEEEecHHHHHHHHHHHhcccCCCCCeeecccccccccce----eeeccCcccccccccccc
Confidence            789999999999999999999999999986 55555 4444  589999999988874    445689999999965   


Q ss_pred             --CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCC--CCCCccEEEecc--ccc
Q 024619          128 --DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRP--LELGADIVMHSA--TKF  201 (265)
Q Consensus       128 --d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~--~~~~~di~~~s~--sK~  201 (265)
                        +.+++++.+.+++++|++.+   .-|...++++|.++|+++|+++|+|.+|+.|.....  .....|+.++||  +|.
T Consensus       107 ~~~~~~~~~~~~~~t~avi~vh---~~G~~~~~~~i~~~~~~~~i~lIEDaaqa~Ga~~~~~~~G~~g~~~~~Sf~~~K~  183 (371)
T d2fnua1         107 NIDELALEKLINERTKAIVSVD---YAGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAIKP  183 (371)
T ss_dssp             SBCGGGSGGGCCTTEEEEEEEC---GGGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSS
T ss_pred             cccchhhhhhccchhhcccccc---ccccccccccccccccccchhhccchhhccCceeccccCCccccccccccccccc
Confidence              56788888889999999764   479999999999999999999999999999876422  233356777776  898


Q ss_pred             cccCCCceeeEEEeechhHHHHHHHHHHh----------------ccCCCChhHHHHHHhccCchHhhHHHHhhchh
Q 024619          202 IAGHSDVMAGVLAVKGERLAKELYFLQNA----------------EGSGLAPFDCWICLRGVKTMALRVEKQQVCFF  262 (265)
Q Consensus       202 ~~g~~g~~~G~v~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  262 (265)
                      +.+..   +|+++..++.+.+........                ....++..++++.+.+|+++....++.++++.
T Consensus       184 l~~g~---GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~n~r~sel~Aaigl~qL~~l~~~~~~R~~~~~  257 (371)
T d2fnua1         184 ITTAE---GGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKAPFLMQKREEAAL  257 (371)
T ss_dssp             SCCSS---CEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             ccccc---ceEEEeechhhhhhcccccccccccccccccccccccccccccchhhhhhhhhhhhccchhhhhhhhhh
Confidence            85543   699999998887766655432                12346677888999999998766666655543

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.73  E-value=2.2e-17  Score=140.52  Aligned_cols=162  Identities=14%  Similarity=0.161  Sum_probs=119.8

Q ss_pred             hhHHHHHHHHHhHhCCCc---eEEe-cchHHHHH-HHHHhcCCCCEEEEcCCCC-CChHHHHHhhcCCCCeEEEeecCC-
Q 024619           55 PTRDALESLLAKLDKADR---ALCF-TSGMAALA-AVTHLLGTGEEIVAGDDLY-GGTDRLLSRVTPKTGVVVKRVNTC-  127 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~---~i~~-~~g~~al~-~~~~~~~~g~~viv~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~-  127 (265)
                      ...+++++.+++++|+++   .+++ +||+.++. ++..+..+++.+++....+ ......+..... ........+.. 
T Consensus        33 ~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  111 (361)
T d1m32a_          33 GVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAGLMG-IAHHAYDCGEVA  111 (361)
T ss_dssp             TTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCCTTCCEEEEESSHHHHHHHHHHHHHT-CCEEEEECCTTS
T ss_pred             HHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhhhhccccceeeehhhhhhHHHHhhhhh-cccccccccccC
Confidence            458899999999999862   3444 45678886 6778888877766655443 333322222222 22233232211 


Q ss_pred             ----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEecccccc
Q 024619          128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI  202 (265)
Q Consensus       128 ----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~~  202 (265)
                          +.+.......++++++.+++.+|.||.+.|+++|.++|+++|+++++|.+++.|..+ +..+.+.|++++|.+||+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~tG~~~~i~~i~~~~~~~g~~~~vDa~qs~G~~~~d~~~~~~D~~~~s~~K~l  191 (361)
T d1m32a_         112 RPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKCI  191 (361)
T ss_dssp             CCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTT
T ss_pred             CccchhhHHHHHhccCccceEEEeeecccccchhhhhhhhhhcccceeeEeecccccCcccccccccccceEEeeecccc
Confidence                234445556789999999999999999999999999999999999999999999886 556779999999999999


Q ss_pred             ccCCCceeeEEEeechh
Q 024619          203 AGHSDVMAGVLAVKGER  219 (265)
Q Consensus       203 ~g~~g~~~G~v~~~~~~  219 (265)
                      +||+|+  |+++.+++.
T Consensus       192 ~gp~G~--g~l~~~~~~  206 (361)
T d1m32a_         192 QGVPGF--AFVIAREQK  206 (361)
T ss_dssp             CCCSSE--EEEEEEHHH
T ss_pred             cCCCCc--eEEEechhh
Confidence            999994  888888643

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=99.73  E-value=1.6e-17  Score=146.35  Aligned_cols=162  Identities=16%  Similarity=0.054  Sum_probs=118.7

Q ss_pred             hhHHHHHHHHHhHhCCCceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-----
Q 024619           55 PTRDALESLLAKLDKADRALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----  127 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----  127 (265)
                      ....++++.+++++|++..+++++|+ +++. ++.+++++||+|+++..+|.+....+ ..+...+..+..++.+     
T Consensus        66 ~~i~eae~~~A~~~ga~~a~f~~~Gtt~~n~a~i~a~~~~gd~Vi~~~~~H~Sv~~~~-~~l~~~~~~~~~~~~~~~g~~  144 (462)
T d1c4ka2          66 GPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSA-LAMAGGRPVYLQTNRNPYGFI  144 (462)
T ss_dssp             THHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHH-TTTTCCEEEEECEEECTTCCE
T ss_pred             HHHHHHHHHHHHHhCCCeEEEECCchHHHHHHHHHHhcCCCCeEEecccchHHHHHHH-HHHhcCCceeeeccccccccc
Confidence            45888999999999999999999997 5554 67888999999999999998887544 2333345555444322     


Q ss_pred             --------CHH---------HHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCC----
Q 024619          128 --------DLD---------EVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRP----  186 (265)
Q Consensus       128 --------d~~---------~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~----  186 (265)
                              +.+         +++++...++..+++...+|..|.+.|+++|+++|+++|+++++|++|+.+....+    
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~~l~vD~A~~~~~~~~~~~~~  224 (462)
T d1c4ka2         145 GGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRN  224 (462)
T ss_dssp             EEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGG
T ss_pred             CCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhhHHHHHHHHHHcCCEEEEechhhccccccCcCCc
Confidence                    112         23334445666666666778899999999999999999999999999987654311    


Q ss_pred             ----------CCCCccEEEeccccccccCCCceeeEEEeechh
Q 024619          187 ----------LELGADIVMHSATKFIAGHSDVMAGVLAVKGER  219 (265)
Q Consensus       187 ----------~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~  219 (265)
                                ...++|++++|+||+++++.+  ++++..++..
T Consensus       225 ~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~~--g~ll~~~~~~  265 (462)
T d1c4ka2         225 SSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQ--TSQIHKKDSH  265 (462)
T ss_dssp             GCTTSCCCCCTTSCEEEEEECHHHHSSCCTT--CEEEEEECGG
T ss_pred             chhhccccccccCCccEEEEecCcccccccc--eEEEEecccc
Confidence                      123469999999999966543  4566555543

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=99.73  E-value=2.5e-18  Score=148.76  Aligned_cols=205  Identities=15%  Similarity=0.102  Sum_probs=142.2

Q ss_pred             eEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCC--ChhHHHHHHHHHhHhCCC--ceEEecchHHHHH-HH
Q 024619           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSG--NPTRDALESLLAKLDKAD--RALCFTSGMAALA-AV   86 (265)
Q Consensus        12 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g--~~~~~~l~~~l~~~~g~~--~~i~~~~g~~al~-~~   86 (265)
                      .++.|.  +...|+.+.++..+..-.......+.........  ....+++++.+++++|++  +++++.++++++. ++
T Consensus        27 ~~iYLd--~as~g~~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~llga~~~ei~~~~~~T~~~~~~~  104 (404)
T d1qz9a_          27 GVIYLD--GNSLGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVL  104 (404)
T ss_dssp             TCEECC--TTTSCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHH
T ss_pred             CCEEcC--CcccccCCHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHhCCCCCcEEEecCchHHHHHHh
Confidence            345554  4567888888877754222221111111111111  134788999999999987  5666666677764 33


Q ss_pred             HH------hcCCCCEEEEcCCCCCChHHHHHhh-cCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHH
Q 024619           87 TH------LLGTGEEIVAGDDLYGGTDRLLSRV-TPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIR  159 (265)
Q Consensus        87 ~~------~~~~g~~viv~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~  159 (265)
                      ..      ...+++.|++.+..|++....+... .+.....+......+++.++++++++|++|.+++.+|.||.+.|++
T Consensus       105 ~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~T~lV~i~~v~~~tG~~~pv~  184 (404)
T d1qz9a_         105 SAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDSPEELPQAIDQDTAVVMLTHVNYKTGYMHDMQ  184 (404)
T ss_dssp             HHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESSGGGHHHHCSTTEEEEEEESBCTTTCBBCCHH
T ss_pred             hhhhhhhcccCCCcEEEEeccccchHHHHHHhhhheeeeeceeccccccchhHHHhcCCCceEEEEecccccccceecHH
Confidence            21      2467888888888777665444222 2222222222224478899999999999999999999999999999


Q ss_pred             HHHHHHHHcCCEEEEeCCcCCCCCcC-CCCCCccEEEeccccccccCCCceeeEEEeechh
Q 024619          160 KIAEMAHAHGALLLVDNSIMSPVLSR-PLELGADIVMHSATKFIAGHSDVMAGVLAVKGER  219 (265)
Q Consensus       160 ~i~~~a~~~~~~li~D~~~~~~~~~~-~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~  219 (265)
                      +|+++|+++|+.+++|.+|+.|.... ....+.|+++.|.+||+.+|+|. +|+++.+...
T Consensus       185 ~i~~~~~~~~~~~~vD~~q~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~-~g~~~~~~~~  244 (404)
T d1qz9a_         185 ALTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGS-QAFVWVSPQL  244 (404)
T ss_dssp             HHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCCCTTC-CCEEEECTTT
T ss_pred             HHhccccccccceeEEeeccccccccccccccceEEEEechhhcccCCce-EEEEEechhh
Confidence            99999999999999999999998863 34568999999999999776664 5777776644

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=7.4e-17  Score=138.67  Aligned_cols=162  Identities=17%  Similarity=0.247  Sum_probs=126.5

Q ss_pred             hhHHHHHHHHHhHhCCCc--eEEec-chHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC---
Q 024619           55 PTRDALESLLAKLDKADR--ALCFT-SGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~~--~i~~~-~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---  127 (265)
                      ...+++++.+++++|.++  .++++ +|++++. ++..++.+|+++++....+.+....  ..++..+..+..+..+   
T Consensus        52 ~i~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~~i~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  129 (388)
T d1h0ca_          52 QIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNVLEPGDSFLVGANGIWGQRAV--DIGERIGARVHPMTKDPGG  129 (388)
T ss_dssp             HHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHCCSSCCEEECBSSHHHHHHH--HHHHHHC--CBCCBCCTTC
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHhhccCCceeeecccceeeeec--cccccccccccccccCCcc
Confidence            348899999999999862  45555 4578886 7888899999999988877665433  3334444444444432   


Q ss_pred             --CHHHHHhhcC-CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEeccccccc
Q 024619          128 --DLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIA  203 (265)
Q Consensus       128 --d~~~l~~~~~-~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~~~  203 (265)
                        |.+++++.+. ++++++.+++.+|.||.+.|+++|.++|+++|+++++|++++.|... +....+.|++++|.+||++
T Consensus       130 ~~~~~~~~~~~~~~~~~~v~~~~~~n~tG~i~pi~~i~~~~~~~g~~~~vD~~qs~g~~~~d~~~~~~D~~~~s~~K~~~  209 (388)
T d1h0ca_         130 HYTLQEVEEGLAQHKPVLLFLTHGESSTGVLQPLDGFGELCHRYKCLLLVDSVASLGGTPLYMDRQGIDILYSGSQKALN  209 (388)
T ss_dssp             CCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHTTTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTC
T ss_pred             ccchHHHHHHhccCCcceEEEeeeeeccccccCHHHHHHHhhcccccceeccccccccccccccccccceeccccccccc
Confidence              6666666554 68999999999999999999999999999999999999999999875 4556789999999999999


Q ss_pred             cCCCceeeEEEeechhH
Q 024619          204 GHSDVMAGVLAVKGERL  220 (265)
Q Consensus       204 g~~g~~~G~v~~~~~~~  220 (265)
                      +|+|+  |+++.++..+
T Consensus       210 gp~g~--~~~~~~~~~~  224 (388)
T d1h0ca_         210 APPGT--SLISFSDKAK  224 (388)
T ss_dssp             CCTTC--EEEEECHHHH
T ss_pred             CCCce--EEEeecHHHH
Confidence            98884  7777776544

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.66  E-value=1.3e-16  Score=139.27  Aligned_cols=159  Identities=12%  Similarity=0.101  Sum_probs=120.6

Q ss_pred             HHHHHHHHhHhCCCc-eEEecchH-HHHH-HHHHh--cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC------
Q 024619           58 DALESLLAKLDKADR-ALCFTSGM-AALA-AVTHL--LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT------  126 (265)
Q Consensus        58 ~~l~~~l~~~~g~~~-~i~~~~g~-~al~-~~~~~--~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~------  126 (265)
                      .++..++.+++|.+. ..++.+|+ +++. ++++.  ..+++.|+++...|++..    ..+...|.+++.++.      
T Consensus       116 ~~~~~~~~~~~g~~~~~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~----k~~~~~g~~~~~v~~~~~~~~  191 (434)
T d2z67a1         116 NKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPI----KAVSFVGMNMRLVETVLDGDR  191 (434)
T ss_dssp             HHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH----HHHHHTTCEEEEECCEEETTE
T ss_pred             HHHHHHHHHhcCCCcceeecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHH----HHHHHhCCcceEEEeecCCCc
Confidence            334456677888763 44555554 5554 44443  337899999999998886    444567778777752      


Q ss_pred             --CCHHHHHhhcC-----CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCC------cCCCCCCccE
Q 024619          127 --CDLDEVASAIG-----PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL------SRPLELGADI  193 (265)
Q Consensus       127 --~d~~~l~~~~~-----~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~------~~~~~~~~di  193 (265)
                        .|++++++++.     .++.+|+++.|++++|.+.|+++|+++|+++|+++++|++|+.+..      ..+...+.|+
T Consensus       192 ~~~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~~~~~~~~D~  271 (434)
T d2z67a1         192 VYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDA  271 (434)
T ss_dssp             EECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCCSE
T ss_pred             cCCCHHHHHHHHHhhhhcCCceEEEeccCcCCCccccCHHHHHHHHHHhCCeEEEeccchhhhhhccccccccccCCcce
Confidence              38999999985     3677889999999999999999999999999999999999986542      1345678999


Q ss_pred             EEeccccccccCCCceeeEEEeechhHHH
Q 024619          194 VMHSATKFIAGHSDVMAGVLAVKGERLAK  222 (265)
Q Consensus       194 ~~~s~sK~~~g~~g~~~G~v~~~~~~~~~  222 (265)
                      +++|++|++++|.|  +|++..+++...+
T Consensus       272 ~~~s~hK~l~~~~g--~~~~~~~~~~~~~  298 (434)
T d2z67a1         272 VVSSSDKNLLTPIG--GGLVYSTDAEFIK  298 (434)
T ss_dssp             EEEEHHHHHCCCSS--CEEEEESCHHHHH
T ss_pred             EEEcCccccccCCC--ccccccCcHHHHH
Confidence            99999999988887  4777777765544

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=3e-16  Score=137.40  Aligned_cols=160  Identities=12%  Similarity=0.024  Sum_probs=121.1

Q ss_pred             HHHHHHHHhHhCCC---ceEEecchH-HHHH-HHHHh---cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC---
Q 024619           58 DALESLLAKLDKAD---RALCFTSGM-AALA-AVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT---  126 (265)
Q Consensus        58 ~~l~~~l~~~~g~~---~~i~~~~g~-~al~-~~~~~---~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~---  126 (265)
                      .++.+++++++|.+   ..+++++|+ +++. ++.+.   ..+++.|+++...|.+..    ..+...|.+++.++.   
T Consensus        97 ~~~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~----~a~~~~g~~~~~v~~~~~  172 (445)
T d3bc8a1          97 NSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCF----KSMVTAGFEPVVIENVLE  172 (445)
T ss_dssp             HHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHH----HHHHHTTCEEEEECCEEE
T ss_pred             HHHHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHH----HHHHHcCCeeEEEEeecc
Confidence            34667788888865   466666666 4443 33332   456789999999998886    445667888877753   


Q ss_pred             -----CCHHHHHhhcC----CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcC------CC-CCC
Q 024619          127 -----CDLDEVASAIG----PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR------PL-ELG  190 (265)
Q Consensus       127 -----~d~~~l~~~~~----~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~------~~-~~~  190 (265)
                           .|++++++++.    +++.+|+++.+++++|.+.|+++|+++|+++|+++++|++|+.+....      .. ..+
T Consensus       173 ~~~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~  252 (445)
T d3bc8a1         173 GDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGR  252 (445)
T ss_dssp             TTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHHSC
T ss_pred             CcccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehhHHHHHHHHHHhCCcEEEEccchhhhhhccccchhccCcCC
Confidence                 28888888874    468899999999999999999999999999999999999998765421      11 125


Q ss_pred             ccEEEeccccccccCCCceeeEEEeechhHHHH
Q 024619          191 ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE  223 (265)
Q Consensus       191 ~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~  223 (265)
                      +|++++|++|++++|.|  +|+++.++....+.
T Consensus       253 vd~~~~s~hK~~~~p~g--~~~l~~~~~~~~~~  283 (445)
T d3bc8a1         253 IDAFVQSLDKNFMVPVG--GAIIAGFNEPFIQD  283 (445)
T ss_dssp             CCEEEEEHHHHHSCCSS--CEEEEESCHHHHHH
T ss_pred             cceEEecCccccccCCC--CceeeeCChHHHHH
Confidence            89999999999988877  57887877665543

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=99.65  E-value=7.4e-16  Score=135.15  Aligned_cols=174  Identities=18%  Similarity=0.129  Sum_probs=128.5

Q ss_pred             CCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEe
Q 024619           45 GPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKR  123 (265)
Q Consensus        45 ~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~  123 (265)
                      ++-.|+  |+|...++++.+++++|.+.+++++||++|+. ++.+++++||+|+.... +..+.    ......|...+.
T Consensus        67 GDd~Y~--~dpt~~~lE~~~a~l~G~e~al~~~SGt~An~~a~~~l~~~Gd~Vi~~~~-f~~~~----~~i~~~g~~~~~  139 (456)
T d1c7ga_          67 GDEAYA--GSENFYHLEKTVKELFGFKHIVPTHQGRGAENLLSQLAIKPGQYVAGNMY-FTTTR----FHQEKNGATFVD  139 (456)
T ss_dssp             CCCCSS--SCHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHHHHHHCCTTEEEEESSC-CHHHH----HHHHHTTEEEEE
T ss_pred             cchhcc--CCchHHHHHHHHHHHhCCCeEEECCCHHHHHHHHHHHhcCCCCeEecCcc-hHHHH----HHHHHcCceeee
Confidence            444565  55999999999999999999999999999885 77888999999887554 32332    222445666665


Q ss_pred             ecC---------------CCHHHHHhhcC----CCceEEEEecCCCCcccc----ccHHHHHHHHHHcCCEEEEeCCcCC
Q 024619          124 VNT---------------CDLDEVASAIG----PWTKLVWVESPTNPRQQI----CDIRKIAEMAHAHGALLLVDNSIMS  180 (265)
Q Consensus       124 ~~~---------------~d~~~l~~~~~----~~~~~i~~~~~~np~G~~----~~l~~i~~~a~~~~~~li~D~~~~~  180 (265)
                      +..               .|++++++.++    .++.++++++++|+.|..    .++++|.++|++||+.+++|+++..
T Consensus       140 ~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~  219 (456)
T d1c7ga_         140 IVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCV  219 (456)
T ss_dssp             CBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHH
T ss_pred             ccccccccccccCCccccCCHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchhh
Confidence            432               27889988886    345689999999988643    3578999999999999999999754


Q ss_pred             CCC----------c--CC------CCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHH
Q 024619          181 PVL----------S--RP------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ  228 (265)
Q Consensus       181 ~~~----------~--~~------~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~  228 (265)
                      +..          .  ..      .....|++++|++|.++++.   +|+++.+++.+.+..+...
T Consensus       220 ~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~---GG~i~~~~~~l~~~~r~~~  282 (456)
T d1c7ga_         220 ENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNI---GGFLCMNDEEMFSAAKELV  282 (456)
T ss_dssp             HHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSS---CEEEEESCHHHHHHHHHHH
T ss_pred             cchhhhcccccccCCCChhhhccccccccccEEEeccccccccc---eeEEEcCCHHHHHHHHHhc
Confidence            321          0  00      01136899999999997654   5999988887776555443

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.61  E-value=9.8e-15  Score=125.00  Aligned_cols=162  Identities=11%  Similarity=0.095  Sum_probs=122.4

Q ss_pred             hHHHHHHHHHhHhCC----C-ceE-EecchHHHHH-HHHHhc---CCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeec
Q 024619           56 TRDALESLLAKLDKA----D-RAL-CFTSGMAALA-AVTHLL---GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN  125 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~----~-~~i-~~~~g~~al~-~~~~~~---~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~  125 (265)
                      ..+++.+.++++++.    + +.+ ++++|+++++ ++..++   ++||+|++....+.+....  ..++..+.....+.
T Consensus        37 ~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~~~~gd~vlv~~~~~~~~~~~--~~~~~~~~~~~~~~  114 (382)
T d2bkwa1          37 IFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFA--DCLRSYGAQVDVVR  114 (382)
T ss_dssp             HHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHH--HHHHHTTCEEEEEC
T ss_pred             HHHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHHhcCCCCceEEEEechhhhhhh--hhcccccccccccc
Confidence            356677777777764    3 344 4556679986 666665   6799999987766554432  34455555555443


Q ss_pred             C------CCHHHHHhhcC-CCceEEEEecCCCCccccccHHHHHHHHHHcC--CEEEEeCCcCCCCCc-CCCCCCccEEE
Q 024619          126 T------CDLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHG--ALLLVDNSIMSPVLS-RPLELGADIVM  195 (265)
Q Consensus       126 ~------~d~~~l~~~~~-~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~--~~li~D~~~~~~~~~-~~~~~~~di~~  195 (265)
                      .      .+.+.+++.+. ++++++++++.+|.||...|++++.+.|++++  +++++|.+++.|..+ +...+++|+++
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~vDa~qs~g~~pid~~~~giD~~~  194 (382)
T d2bkwa1         115 PLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFAL  194 (382)
T ss_dssp             CSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEEE
T ss_pred             ccCCCCccchhHHHHHhhhccchheeeeeccccccccccchhhhhhccccccceeeeeecccccccccccccccCeeEEe
Confidence            2      25677776654 67899999999999999999999999988774  999999999999986 45567899999


Q ss_pred             eccccccccCCCceeeEEEeechhHH
Q 024619          196 HSATKFIAGHSDVMAGVLAVKGERLA  221 (265)
Q Consensus       196 ~s~sK~~~g~~g~~~G~v~~~~~~~~  221 (265)
                      +|.+||++||+|+  |+++.+++.+.
T Consensus       195 ~s~~K~l~gP~G~--g~l~vs~~~~~  218 (382)
T d2bkwa1         195 TASQKAIGAPAGL--SISLCSSRFMD  218 (382)
T ss_dssp             EESSSTTCCCSCE--EEEEECHHHHH
T ss_pred             ecccccCcCCCch--hhhhccHHHHh
Confidence            9999999999995  88888886543

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=99.59  E-value=9.8e-15  Score=125.15  Aligned_cols=162  Identities=16%  Similarity=0.249  Sum_probs=125.7

Q ss_pred             hhHHHHHHHHHhHhCCC--ceEEecc-hHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC---
Q 024619           55 PTRDALESLLAKLDKAD--RALCFTS-GMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~--~~i~~~~-g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---  127 (265)
                      ...+++++.+++++|++  +++++++ |+.++. ++..++.+|+++++....+.+...  ...++..+...+.++..   
T Consensus        50 ~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a~ea~~~~l~~~~~~vl~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~  127 (388)
T d2ch1a1          50 RTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAERA--VEMSERYGADVRTIEGPPDR  127 (388)
T ss_dssp             HHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHH--HHHHHHTTCEEEEEECCTTS
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHHhccccccccccccccccccc--hhhhhhhccccccccccccc
Confidence            35889999999999987  4676665 468886 778889999999877666554432  23344455555555432   


Q ss_pred             --CHHHHHhhc-CCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEeccccccc
Q 024619          128 --DLDEVASAI-GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIA  203 (265)
Q Consensus       128 --d~~~l~~~~-~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~~~  203 (265)
                        +.+..++.. ..+++++.+++.+|.+|.+.|+++|.++|+++|+++++|.+++.|... +..+.+.|++++|.+|+++
T Consensus       128 ~~~~~~~~~~~~~~~~~~v~~~~~~t~tG~~~~~~~i~~~~~~~~~~~~vD~~ss~g~~pid~~~~~~d~~~~s~~K~~~  207 (388)
T d2ch1a1         128 PFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLG  207 (388)
T ss_dssp             CCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCC
T ss_pred             ccchhhhhhhhccCCcceeeeeecccccccccchhhhcchhccccceeeeeeeecccccccchhccCceEEEEccccccC
Confidence              455555544 367999999999999999999999999999999999999999998875 4567799999999999999


Q ss_pred             cCCCceeeEEEeechhH
Q 024619          204 GHSDVMAGVLAVKGERL  220 (265)
Q Consensus       204 g~~g~~~G~v~~~~~~~  220 (265)
                      +|+|+  |+++.++..+
T Consensus       208 gp~G~--g~~~~~~~~~  222 (388)
T d2ch1a1         208 APPGI--TPISISPKAL  222 (388)
T ss_dssp             CCSSC--EEEEECHHHH
T ss_pred             CCCeE--EEEeccHHHH
Confidence            99985  8888776544

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.58  E-value=9.6e-15  Score=123.73  Aligned_cols=162  Identities=17%  Similarity=0.150  Sum_probs=125.7

Q ss_pred             hhHHHHHHHHHhHhCCC-ceEEec-chHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC--CH
Q 024619           55 PTRDALESLLAKLDKAD-RALCFT-SGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--DL  129 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~-~~i~~~-~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--d~  129 (265)
                      ...+++++.++++++.+ ++++++ +|+.++. ++..++.+|++|++....+.  ...+...++..+.++..++.+  +.
T Consensus        33 ~i~~~~~~~l~~ll~~~~~~i~~~gsgT~a~e~~~~nl~~~g~~vlv~~~G~f--~~~~~~~a~~~~~~~~~~~~~~g~~  110 (348)
T d1iuga_          33 EVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFAPGERVLVPVYGKF--SERFYEIALEAGLVVERLDYPYGDT  110 (348)
T ss_dssp             HHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHH--HHHHHHHHHHTTCEEEEEECCTTCC
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHhcccccccceeecchHH--HHHHHHHHHhcCcccccccccCCCc
Confidence            34888899999999987 455544 4568886 67889999999887665543  333457777888777777644  22


Q ss_pred             HHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcC--CEEEEeCCcCCCCCc-CCCCCCccEEEeccccccccCC
Q 024619          130 DEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHG--ALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHS  206 (265)
Q Consensus       130 ~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~--~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~~~g~~  206 (265)
                      ....+...++++.+++++..+.+|.+.|+++|.++|++++  .++++|.+.+.|..+ +...+++|++++|.+|+++||+
T Consensus       111 ~~~~~~~~~~~~~v~~~h~eTstG~~~~i~~i~~~~~~~~~~~l~~vDavss~g~~~i~~d~~~iD~~~~~sqK~l~gpp  190 (348)
T d1iuga_         111 PRPEDVAKEGYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPP  190 (348)
T ss_dssp             CCTTTSCCSSCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCCS
T ss_pred             cccccccccCCCeeEEEecchhhhhhccHHHHHHHHHhhhccceeechhhhcccccccccccccCCEEEeccccceecCC
Confidence            2223334578899999999999999999999999999985  788999999998875 4445689999999999999999


Q ss_pred             CceeeEEEeechhH
Q 024619          207 DVMAGVLAVKGERL  220 (265)
Q Consensus       207 g~~~G~v~~~~~~~  220 (265)
                      |+  |+++.+++.+
T Consensus       191 G~--~~v~~s~~~l  202 (348)
T d1iuga_         191 GL--GFVALSPRAL  202 (348)
T ss_dssp             CE--EEEEECHHHH
T ss_pred             ce--eeeeechHHH
Confidence            95  8888887654

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=99.57  E-value=1.7e-14  Score=122.95  Aligned_cols=162  Identities=16%  Similarity=0.244  Sum_probs=123.2

Q ss_pred             hhHHHHHHHHHhHhCCC--ceEEecc-hHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC----
Q 024619           55 PTRDALESLLAKLDKAD--RALCFTS-GMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT----  126 (265)
Q Consensus        55 ~~~~~l~~~l~~~~g~~--~~i~~~~-g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~----  126 (265)
                      ...+++++.+++++|.+  ..+++++ |+.++. ++..++.+|+.+++....+......  ..++..+.....+..    
T Consensus        51 ~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  128 (377)
T d1vjoa_          51 ALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGNRLV--DMAGRYGADVRTISKPWGE  128 (377)
T ss_dssp             HHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHH--HHHHHTTCEEEEEECCTTC
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHhccccccccceeeechhhhhhh--hhhhhhcccccccccCCCC
Confidence            35889999999999975  3666655 468875 7788899999999887776554332  333444444444332    


Q ss_pred             -CCHHHHH-hhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEeccccccc
Q 024619          127 -CDLDEVA-SAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIA  203 (265)
Q Consensus       127 -~d~~~l~-~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~~~  203 (265)
                       .+.+..+ ....++++++.+.+.+|.||.+.|+++|.++||++|.++++|.+++.|... +....+.|++++|.+|+++
T Consensus       129 ~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~i~~i~~~~~~~g~~~~vDa~~~~g~~~~~~~~~~~d~~~~s~~K~~~  208 (377)
T d1vjoa_         129 VFSLEELRTALETHRPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLG  208 (377)
T ss_dssp             CCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTC
T ss_pred             cccchhhhhhhhcCcceeeeeeeeeccceeeechhhhhhhhhhccceEEEecchhhhhhhhcccccccceeeeccccccc
Confidence             1333333 334468899999999999999999999999999999999999999999875 4557789999999999999


Q ss_pred             cCCCceeeEEEeechhH
Q 024619          204 GHSDVMAGVLAVKGERL  220 (265)
Q Consensus       204 g~~g~~~G~v~~~~~~~  220 (265)
                      ||+|  +|++..++..+
T Consensus       209 gp~g--~~~~~~~~~~~  223 (377)
T d1vjoa_         209 CSPG--ASPFTMSSRAI  223 (377)
T ss_dssp             SCSS--CEEEEECHHHH
T ss_pred             CCCE--EEEecchhhHH
Confidence            9988  47777766544

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.52  E-value=4e-14  Score=118.12  Aligned_cols=175  Identities=21%  Similarity=0.212  Sum_probs=115.4

Q ss_pred             CCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEee
Q 024619           46 PYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV  124 (265)
Q Consensus        46 ~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~  124 (265)
                      ...|++.  |...++++.+++++|.+++++++||++|+. ++..+.++||.+++..+.+.++.... ......+..+..+
T Consensus        27 ~~~yg~~--p~~~~le~~lA~~~G~~~~~~~~sGt~A~~~al~a~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  103 (343)
T d1m6sa_          27 DDVYGED--PTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVG-AMAVLSGVMPHPV  103 (343)
T ss_dssp             CGGGTCC--HHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCHHHHSSTT-HHHHHTCCEEEEE
T ss_pred             CcccCCC--HHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhccCCceeccccccceeeecc-cccccccceeecc
Confidence            3345543  889999999999999999999999998875 78888999999999988775443211 1112233444444


Q ss_pred             c----CCCHHHHHhhcCC------CceEEE-EecCCCCccccc---cHHHHHHHHHHcCCEEEEeCCcCCCCCcCC----
Q 024619          125 N----TCDLDEVASAIGP------WTKLVW-VESPTNPRQQIC---DIRKIAEMAHAHGALLLVDNSIMSPVLSRP----  186 (265)
Q Consensus       125 ~----~~d~~~l~~~~~~------~~~~i~-~~~~~np~G~~~---~l~~i~~~a~~~~~~li~D~~~~~~~~~~~----  186 (265)
                      +    ..|++.+++.+..      ++..++ .+.++++.|.+.   ++++|+++|+++|+++++|+++..+.....    
T Consensus       104 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~  183 (343)
T d1m6sa_         104 PGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPV  183 (343)
T ss_dssp             CEETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCH
T ss_pred             ccccCccCHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHHHHHHHhcCeEEEeccccccccccccccch
Confidence            4    2378888888763      344444 455667777765   467888899999999999999874433210    


Q ss_pred             --CCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHH
Q 024619          187 --LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF  226 (265)
Q Consensus       187 --~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~  226 (265)
                        .....+..+.+.+|..++.   .++++....+.+......
T Consensus       184 ~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~  222 (343)
T d1m6sa_         184 KEYAGYADSVMFCLSKGLCAP---VGSVVVGDRDFIERARKA  222 (343)
T ss_dssp             HHHHHTCSEEEEESSSTTCCS---SCEEEEECHHHHHHHHHH
T ss_pred             hhhcccccccccccccccccc---ccccccccHHHHhhhHhh
Confidence              1112345555556655443   356666666555443333

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=1.8e-13  Score=119.53  Aligned_cols=158  Identities=10%  Similarity=-0.067  Sum_probs=119.0

Q ss_pred             HHHHHHHHHhHhCCC-------ceEEecchHHHHH-HHHHhc-----------CC-CCEEEEcCCCCCChHHHHHhhcCC
Q 024619           57 RDALESLLAKLDKAD-------RALCFTSGMAALA-AVTHLL-----------GT-GEEIVAGDDLYGGTDRLLSRVTPK  116 (265)
Q Consensus        57 ~~~l~~~l~~~~g~~-------~~i~~~~g~~al~-~~~~~~-----------~~-g~~viv~~~~~~~~~~~~~~~~~~  116 (265)
                      -.++.+++++++|.+       ...++++|++|+. ++.+.-           .+ ...++++...|.++    .++++.
T Consensus        95 E~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~~H~s~----~Kaa~~  170 (450)
T d1pmma_          95 DLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICW----HKFARY  170 (450)
T ss_dssp             HHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCEEEESSCCHHH----HHHHHH
T ss_pred             HHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCceEEecccHHHH----HHHHHH
Confidence            455667889999853       2578888887763 333321           12 23466776666555    477788


Q ss_pred             CCeEEEeecCC------CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHH------HHcCCEEEEeCCcCCCCCc
Q 024619          117 TGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA------HAHGALLLVDNSIMSPVLS  184 (265)
Q Consensus       117 ~g~~~~~~~~~------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a------~~~~~~li~D~~~~~~~~~  184 (265)
                      .|++++.++.+      |++++++++.+++.+|+.+..++.||.+.|+++|.+++      +++|+++++|.+++.+..+
T Consensus       171 ~gi~~~~v~~~~~~~~~d~~~L~~~i~~~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p  250 (450)
T d1pmma_         171 WDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAP  250 (450)
T ss_dssp             TTCEEEECCCBTTBCSCCHHHHHHHCCTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHH
T ss_pred             cCCCceEeeecCCCCcCcHHHHHHHhhhCceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhhccceee
Confidence            89999988754      79999999999999999999999999999988777764      6689999999999765432


Q ss_pred             --CC------CCCCccEEEeccccccccCCCceeeEEEeechhH
Q 024619          185 --RP------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       185 --~~------~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                        .+      ...++|.+..|.|||+.+|.|  +|+++.++...
T Consensus       251 ~~~~~~~~~~~~~~aDSi~~s~HK~~~~p~g--~g~l~~r~~~~  292 (450)
T d1pmma_         251 FVAPDIVWDFRLPRVKSISASGHKFGLAPLG--CGWVIWRDEEA  292 (450)
T ss_dssp             HHCTTCCCSTTSTTEEEEEEETTTTTCCCSS--CEEEEESSGGG
T ss_pred             eechhhhhhhcccceeEeecChhhccCCCCC--eeEEEecChhh
Confidence              11      123689999999999988988  58888887654

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.46  E-value=2.2e-12  Score=108.84  Aligned_cols=160  Identities=22%  Similarity=0.244  Sum_probs=116.8

Q ss_pred             CChhHHHHH----HHHHhHhCCC-ceEEecchHHHH-HHHHHhcCCCCEEEEcCCCCCChHHHHHhhcC--CCCeEEEee
Q 024619           53 GNPTRDALE----SLLAKLDKAD-RALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTP--KTGVVVKRV  124 (265)
Q Consensus        53 g~~~~~~l~----~~l~~~~g~~-~~i~~~~g~~al-~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~--~~g~~~~~~  124 (265)
                      |....++++    ++.+++||++ ..+-..||+.|. .++.++++|||+|+..++..++..... ....  ....+.+..
T Consensus        63 G~~~id~iE~la~~ra~~lF~a~~anVqp~SGs~An~av~~all~pGD~im~l~l~~GGHlshg-~~~~~~g~~~~~~~y  141 (405)
T d1kl1a_          63 GCEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHG-SPVNFSGVQYNFVAY  141 (405)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHCCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGT-CTTSHHHHHSEEEEE
T ss_pred             CchhHHHHHHHHHHHHHHHhCCCcceeeccCchHHHHHHHHHhcCCCCEEEEeecccccccccC-ccccccceEEEEEEe
Confidence            554444444    5567889998 466677888775 588999999999998887665543110 0001  112445544


Q ss_pred             cC------CCHHHHHhhcC-CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcC-----CCCCcCCCCCCcc
Q 024619          125 NT------CDLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIM-----SPVLSRPLELGAD  192 (265)
Q Consensus       125 ~~------~d~~~l~~~~~-~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~-----~~~~~~~~~~~~d  192 (265)
                      +.      .|.+++++.+. .++++|++....+|  ...|.+++.++|++.|++++.|.+|-     .+.+++|... .|
T Consensus       142 ~~d~~~~~ID~d~l~~~a~~~kPklIi~G~S~y~--r~~d~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~~~-aD  218 (405)
T d1kl1a_         142 GVDPETHVIDYDDVREKARLHRPKLIVAAASAYP--RIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPY-AH  218 (405)
T ss_dssp             CBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTT-CS
T ss_pred             ccchhcccccHHHHHHHHHhhCcceEEecccccc--cccChHHHHHHHhhhCCEEecchhhHhhhhhhhhcCChhhh-hh
Confidence            43      38899988876 67898887665554  45789999999999999999999995     4566788865 89


Q ss_pred             EEEeccccccccCCCceeeEEEeechh
Q 024619          193 IVMHSATKFIAGHSDVMAGVLAVKGER  219 (265)
Q Consensus       193 i~~~s~sK~~~g~~g~~~G~v~~~~~~  219 (265)
                      ++++|.+|+|.||.   +|++..+++.
T Consensus       219 vvt~tThKtlrGPr---gg~I~~~~~~  242 (405)
T d1kl1a_         219 FVTTTTHKTLRGPR---GGMILCQEQF  242 (405)
T ss_dssp             EEEEESSSTTCCCS---CEEEEECHHH
T ss_pred             heeccccccccCCC---CceEEecchh
Confidence            99999999999986   5999887643

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=7.2e-13  Score=112.36  Aligned_cols=154  Identities=23%  Similarity=0.258  Sum_probs=113.9

Q ss_pred             HHHHH-HHHHhHhCCC-ceEEecchHHHH-HHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC--eEEEeecC-----
Q 024619           57 RDALE-SLLAKLDKAD-RALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG--VVVKRVNT-----  126 (265)
Q Consensus        57 ~~~l~-~~l~~~~g~~-~~i~~~~g~~al-~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g--~~~~~~~~-----  126 (265)
                      .|.++ ++.+++||++ ..+-..||+.|. .++.++++|||+|+..+..+++..... ..+...|  .+.+..+.     
T Consensus        73 iE~la~~ra~~lF~a~~anVqp~SGs~AN~av~~All~pGD~Il~l~l~~GGHlshg-~~~~~~g~~~~~~~y~~d~~~~  151 (416)
T d1dfoa_          73 VEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHG-SPVNFSGKLYNIVPYGIDATGH  151 (416)
T ss_dssp             HHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECTTTTCCGGGT-CTTSHHHHHSEEEEECBCSSSS
T ss_pred             HHHHHHHHHHHHhCCCcceeecccCccHHHHHHHHhcCCCCeeeecccccccccccc-ccccccCceEEEEecccCCccC
Confidence            33333 5556789998 466678899776 588999999999999888777664221 1111111  23333332     


Q ss_pred             CCHHHHHhhcC-CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCC-----CCCcCCCCCCccEEEecccc
Q 024619          127 CDLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS-----PVLSRPLELGADIVMHSATK  200 (265)
Q Consensus       127 ~d~~~l~~~~~-~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~-----~~~~~~~~~~~di~~~s~sK  200 (265)
                      .|.+++++... .++++|++....+|  ...|.+++.++|++.|++++.|.+|-.     +.+++|... .|++.+|+||
T Consensus       152 IDyd~l~~~a~~~kPklIi~G~S~y~--r~~d~~~~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~~-aDvvt~tThK  228 (416)
T d1dfoa_         152 IDYADLEKQAKEHKPKMIIGGFSAYS--GVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPH-AHVVTTTTHK  228 (416)
T ss_dssp             BCHHHHHHHHHHHCCSEEEEECSSCC--SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTTT-SSEEEEESSS
T ss_pred             ccHHHHHHHHHHhccceEEecccccc--cccCHHHHHHHHHhcCceEEcchhhhhcceeccccCCcccc-cceeeeehhh
Confidence            38888888765 68999988754443  678999999999999999999999964     455688877 6999999999


Q ss_pred             ccccCCCceeeEEEeec
Q 024619          201 FIAGHSDVMAGVLAVKG  217 (265)
Q Consensus       201 ~~~g~~g~~~G~v~~~~  217 (265)
                      +|.||.   +|++..++
T Consensus       229 tlrGPr---ggiI~~~~  242 (416)
T d1dfoa_         229 TLAGPR---GGLILAKG  242 (416)
T ss_dssp             TTCCCS---CEEEEESS
T ss_pred             cccCCC---ceEEEecc
Confidence            999886   59998874

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=3.6e-14  Score=124.78  Aligned_cols=165  Identities=15%  Similarity=0.154  Sum_probs=117.8

Q ss_pred             CChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHhcCCCCE---------EEEcCCCCCChHHHHHhhcCCCCeEEE
Q 024619           53 GNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEE---------IVAGDDLYGGTDRLLSRVTPKTGVVVK  122 (265)
Q Consensus        53 g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~~~~g~~---------viv~~~~~~~~~~~~~~~~~~~g~~~~  122 (265)
                      ++|...++++.+++++|.+.+++++||++|+. ++..++++|+.         ++.....|....    ......|.+++
T Consensus        72 ~~~~~~~le~~~a~l~G~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~G~~~~  147 (467)
T d2v1pa1          72 GSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQ----GHSQINGCTVR  147 (467)
T ss_dssp             SCHHHHHHHHHHHHHTCCSEEEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHH----HHHHHTTCEEE
T ss_pred             CCchHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEecccccccH----HHHHHcCCeee
Confidence            45889999999999999999999999998875 66666655543         333333332222    34455678887


Q ss_pred             eecCC---------------CHHHHHhhcC----CCceEEEEecCCCCcccc----ccHHHHHHHHHHcCCEEEEeCCcC
Q 024619          123 RVNTC---------------DLDEVASAIG----PWTKLVWVESPTNPRQQI----CDIRKIAEMAHAHGALLLVDNSIM  179 (265)
Q Consensus       123 ~~~~~---------------d~~~l~~~~~----~~~~~i~~~~~~np~G~~----~~l~~i~~~a~~~~~~li~D~~~~  179 (265)
                      .++.+               |++++++.+.    +++++++++..+|..|..    .++++|.++|++||+++++|+++.
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~a~~  227 (467)
T d2v1pa1         148 NVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARF  227 (467)
T ss_dssp             ECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTH
T ss_pred             ecccccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHHcCCEEEEechhh
Confidence            76532               6788888775    357889999998876543    358999999999999999999986


Q ss_pred             CCCC----------c-CC-------CCCCccEEEeccccccccCCCceeeEEEeechhHHHHH
Q 024619          180 SPVL----------S-RP-------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL  224 (265)
Q Consensus       180 ~~~~----------~-~~-------~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~  224 (265)
                      .+..          . ..       .....|++.+|.+|.++++.   +|++..+++.+....
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~~---gg~i~~~~~~~~~~~  287 (467)
T d2v1pa1         228 AENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPM---GGLLCMKDDSFFDVY  287 (467)
T ss_dssp             HHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSS---CEEEEECSGGGHHHH
T ss_pred             hccccccccccccccCCcccccchhhcccCCEEEecCCCCCCCCC---ceeEEecchhhhhHH
Confidence            4321          0 00       01237899999999887654   588888876655433

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=99.42  E-value=6.2e-13  Score=110.53  Aligned_cols=161  Identities=14%  Similarity=0.059  Sum_probs=104.6

Q ss_pred             eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceE-EecchHHHHH-HHHH
Q 024619           11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRAL-CFTSGMAALA-AVTH   88 (265)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i-~~~~g~~al~-~~~~   88 (265)
                      .+.++|. |+++.|+ .|.++++..  ...  .+....|.  .++..+++++.+++++|.+..+ ++++|++|+. ++..
T Consensus         2 ~~~~~f~-s~n~~g~-~P~v~~A~~--~a~--~~~~~~~~--~~~~~~~l~~~la~~~g~~~~v~f~~sGt~An~~a~~~   73 (345)
T d1v72a1           2 PPALGFS-SDNIAGA-SPEVAQALV--KHS--SGQAGPYG--TDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSA   73 (345)
T ss_dssp             CCCCBCS-CGGGCCC-CHHHHHHHH--HTT--SSCCCSTT--CSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHT
T ss_pred             CCCcCcC-CCCCCCC-CHHHHHHHH--HHh--ccCccccC--CCHHHHHHHHHHHHHHCCCcEEEECCchHHHHHHHHHH
Confidence            4678999 7888885 334444432  211  11223332  3378999999999999998655 5588888875 6677


Q ss_pred             hcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeec-----CCCHHHHHhhcCCC------ce-EEEEecCCCCcccc-
Q 024619           89 LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN-----TCDLDEVASAIGPW------TK-LVWVESPTNPRQQI-  155 (265)
Q Consensus        89 ~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~~d~~~l~~~~~~~------~~-~i~~~~~~np~G~~-  155 (265)
                      ++.+++.+++....+.+....+ ......+..+..++     ..+++.+.+.+.++      +. .++...+.|+.|.. 
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (345)
T d1v72a1          74 MTPPWGNIYCHPASHINNDECG-APEFFSNGAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIY  152 (345)
T ss_dssp             SCCTTEEEEECTTSHHHHSSTT-HHHHHTTSCEEEECCCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCC
T ss_pred             HHhcCCccccccccceeeechh-hHHHhcCcccccccccccccccHHHhhhhhcccccccccccceeeeeeccccccccc
Confidence            7888888887766654432221 11122344444443     34788888888642      23 33445555666655 


Q ss_pred             --ccHHHHHHHHHHcCCEEEEeCCcCC
Q 024619          156 --CDIRKIAEMAHAHGALLLVDNSIMS  180 (265)
Q Consensus       156 --~~l~~i~~~a~~~~~~li~D~~~~~  180 (265)
                        .+++++.++|++||++++.|+++..
T Consensus       153 ~~~~~~~i~~~~~~~~~~~~~D~~~~~  179 (345)
T d1v72a1         153 TLDEIEAIGDVCKSSSLGLHMDGSRFA  179 (345)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEEETTHH
T ss_pred             cchhhhhHHHHHHhcCceeeecccccc
Confidence              4678899999999999999999864

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3e-12  Score=110.20  Aligned_cols=231  Identities=15%  Similarity=0.113  Sum_probs=145.9

Q ss_pred             cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccC-CC-CChhHHHHHHHHHhHhCCCceEEecchHHHHH
Q 024619            9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYT-RS-GNPTRDALESLLAKLDKADRALCFTSGMAALA   84 (265)
Q Consensus         9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~-~~-g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~   84 (265)
                      .+.++|+|.+  ++..+|...|.+..+..-+...      ..+. .. -......+++.+.++.+.+.+.+.+||++|..
T Consensus        39 dG~~ylD~~~g~~~~~lGh~~p~i~~Av~~q~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~sGseA~e  112 (404)
T d2byla1          39 EGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDK------LTLTSRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGE  112 (404)
T ss_dssp             TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTT------CCCCCTTEEESSHHHHHHHHHHHHTCSEEEEESSHHHHHH
T ss_pred             CCCEEEEecCCHHHHhhcCCCHHHHHHHHHHHhh------CCCcccccccchHHHHHHhhhhcccccccccccCccccch
Confidence            4568899864  3555899888777765432222      1111 11 22457778888899999999999999998885


Q ss_pred             -HHHHhc---------C-CCCEEEEcCCCCCChHHHHHhh---------cCCCCeEEEeecCCCHHHHHhhcC-CCceEE
Q 024619           85 -AVTHLL---------G-TGEEIVAGDDLYGGTDRLLSRV---------TPKTGVVVKRVNTCDLDEVASAIG-PWTKLV  143 (265)
Q Consensus        85 -~~~~~~---------~-~g~~viv~~~~~~~~~~~~~~~---------~~~~g~~~~~~~~~d~~~l~~~~~-~~~~~i  143 (265)
                       ++....         . .+..++.....|+.........         .......+..+|..|.+++++.+. +++.+|
T Consensus       113 ~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~~d~~~l~~~l~~~~iAav  192 (404)
T d2byla1         113 TACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQDPNVAAF  192 (404)
T ss_dssp             HHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECTTCHHHHHHHHTSTTEEEE
T ss_pred             hHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEecccCHHHHHHhcCCCCeEEE
Confidence             333221         1 2345666666665432211011         111112355667789999999986 568899


Q ss_pred             EEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CCCCCccEEEeccccccccCCCceeeEE
Q 024619          144 WVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVL  213 (265)
Q Consensus       144 ~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~~~~~di~~~s~sK~~~g~~g~~~G~v  213 (265)
                      +++......|.+.+    +++|.++|++||+++|+||++. .|-.+.     .....+||+  +++|.+++ +.+..|.+
T Consensus       193 iiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~a~~~~gv~PDi~--~~gK~l~g-G~~p~~av  269 (404)
T d2byla1         193 MVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIV--LLGKALSG-GLYPVSAV  269 (404)
T ss_dssp             EECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-TSSCCEEE
T ss_pred             EECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccccchhhhcCCCCCEE--EECchhhC-CCccceee
Confidence            99988887887754    8999999999999999999984 233331     223357988  57999954 33567888


Q ss_pred             EeechhHHHHHHHHHHhccCCCChhHHHHHHhccCc
Q 024619          214 AVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT  249 (265)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  249 (265)
                      +.+++. .+.+.......+..-+|..++..++.|+.
T Consensus       270 ~~~~~i-~~~~~~~~~~~T~~gnpl~~aaa~a~L~~  304 (404)
T d2byla1         270 LCDDDI-MLTIKPGEHFSTYGGNPLGCRVAIAALEV  304 (404)
T ss_dssp             EECHHH-HTTSCTTSSCCSSTTCHHHHHHHHHHHHH
T ss_pred             eechhh-hhccCCCCCCcCCCcCHHHHHHHHHHHHH
Confidence            777643 33222222233344456666665555543

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=99.32  E-value=6.6e-12  Score=107.42  Aligned_cols=231  Identities=16%  Similarity=0.141  Sum_probs=146.6

Q ss_pred             cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CChhHHHHHHHHHhHhCCC--ceEEecchHHHH
Q 024619            9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLDKAD--RALCFTSGMAAL   83 (265)
Q Consensus         9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~g~~--~~i~~~~g~~al   83 (265)
                      .+.++++|.+  ++..+|...|.+..+..-+...     ....+.. ..+...++.+.+.+.....  .+.+.+||++|+
T Consensus        35 dG~~ylD~~~g~~~~~lGh~hp~v~~a~~~~~~~-----~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~f~~sGseA~  109 (387)
T d1vefa1          35 EGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAET-----LMAMPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEAN  109 (387)
T ss_dssp             TSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHH-----CCCCCTTSCCHHHHHHHHHHHHTSCTTEEEEEEESSHHHHH
T ss_pred             CCCEEEEcchhHHhhhhcCCcHHHHHHHHHHHHh-----hcccccccCCchHHHHHHHhhhhccccceeeccccCchHHH
Confidence            4577888854  4556998777777665422221     1111112 3466777777777665444  477888999998


Q ss_pred             H-HHHHh--cCCCCEEEEcCCCCCChHHHHHhhc---------CCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCC
Q 024619           84 A-AVTHL--LGTGEEIVAGDDLYGGTDRLLSRVT---------PKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNP  151 (265)
Q Consensus        84 ~-~~~~~--~~~g~~viv~~~~~~~~~~~~~~~~---------~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np  151 (265)
                      . ++...  ......|+....+|++.........         .-....+..+|.+|.+.+++.+.+++.+|+++.....
T Consensus       110 e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~~d~~~l~~~~~~~iAavi~EPi~g~  189 (387)
T d1vefa1         110 EAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAVDEETAAVILEPVQGE  189 (387)
T ss_dssp             HHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHHHCCTTEEEEEECSEETT
T ss_pred             HHHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCCCCHHHHHHhcCCCeEEEEEECCCCC
Confidence            5 33322  3445778888888876543321111         1112345667788999999999999999999988877


Q ss_pred             cccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CCCCCccEEEeccccccccCCCceeeEEEeechhHH
Q 024619          152 RQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA  221 (265)
Q Consensus       152 ~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~  221 (265)
                      .|.+.+    +++|.++|++||+++|.||++. .|..+.     ..+..+|+++  ++|.+++  |+..+.+..+++...
T Consensus       190 ~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~~~~~~v~PDi~~--~gK~l~g--G~~~~~~~~~~~~~~  265 (387)
T d1vefa1         190 GGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILT--LAKALGG--GVPLGVAVMREEVAR  265 (387)
T ss_dssp             TTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEE--ECGGGGT--TSSCEEEEEEHHHHH
T ss_pred             CCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCCCcccccCCcCCceee--ecccCCC--Cccccccccceeeee
Confidence            787754    8999999999999999999985 333332     1234679986  4898854  355666666665432


Q ss_pred             HHHHHHHHhccCCCChhHHHHHHhccCc
Q 024619          222 KELYFLQNAEGSGLAPFDCWICLRGVKT  249 (265)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~  249 (265)
                      . ........+..-+|..+...+..|+.
T Consensus       266 ~-~~~~~~g~T~~gnPla~aaa~a~L~~  292 (387)
T d1vefa1         266 S-MPKGGHGTTFGGNPLAMAAGVAAIRY  292 (387)
T ss_dssp             T-SCTTSSCCSSTTCHHHHHHHHHHHHH
T ss_pred             c-cccCCccccCCCCcchhhhcccchhh
Confidence            2 22222223334456666665555544

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.31  E-value=4.8e-12  Score=111.03  Aligned_cols=158  Identities=16%  Similarity=0.131  Sum_probs=115.6

Q ss_pred             HHHHHHHHHhHhCCC-----------ceEEecchHHHH-HHHHHh----c------CCC--------C-EEEEcCCCCCC
Q 024619           57 RDALESLLAKLDKAD-----------RALCFTSGMAAL-AAVTHL----L------GTG--------E-EIVAGDDLYGG  105 (265)
Q Consensus        57 ~~~l~~~l~~~~g~~-----------~~i~~~~g~~al-~~~~~~----~------~~g--------~-~viv~~~~~~~  105 (265)
                      -.++.+++++++|.+           ..+++++|++++ .++...    +      .+|        + .|++++-+|.+
T Consensus       115 E~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H~S  194 (476)
T d1js3a_         115 ETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSS  194 (476)
T ss_dssp             HHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHH
T ss_pred             HHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEecccccHH
Confidence            555668889988764           256777888775 333221    1      111        1 36678888877


Q ss_pred             hHHHHHhhcCCCCeEEEeecCC-----CHHHHHhhcCC------CceEEEEecCCCCccccccHHHHHHHHHHcCCEEEE
Q 024619          106 TDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGP------WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV  174 (265)
Q Consensus       106 ~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~~~~------~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~  174 (265)
                      ..    +.+...|+.++.++.+     |+++|++.+.+      .+.+|+.+..++.+|.+.|+++|.++|++||+++++
T Consensus       195 i~----ka~~~lGl~~~~v~~d~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDpl~~I~~i~~~~~~wlHV  270 (476)
T d1js3a_         195 VE----RAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHV  270 (476)
T ss_dssp             HH----HHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEE
T ss_pred             HH----HHHHhcCceEEEeccCCCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeeccHHHHHHHHHhcCcEEEE
Confidence            75    5556678888888765     78999988853      245677788899999999999999999999999999


Q ss_pred             eCCcCCCCCcCCC-------CCCccEEEeccccccccCCCceeeEEEeechhH
Q 024619          175 DNSIMSPVLSRPL-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       175 D~~~~~~~~~~~~-------~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~  220 (265)
                      |.+|+......+.       -..+|-+..++|||+..|.+  +|+++.++...
T Consensus       271 DAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~--~g~~l~r~~~~  321 (476)
T d1js3a_         271 DAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFD--CSAMWVKRRTD  321 (476)
T ss_dssp             ECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSS--CEEEEESCHHH
T ss_pred             ecccchhhhhhcchhhhhcCCcccceeeecCccccccCCc--ceeecccchHH
Confidence            9999865543221       12479999999999988766  68888887543

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=99.31  E-value=4.3e-12  Score=111.20  Aligned_cols=164  Identities=17%  Similarity=0.167  Sum_probs=110.6

Q ss_pred             CccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHhcCCCC-------EEEEcCCCCCChHHHHHhhcCCCC
Q 024619           47 YDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGE-------EIVAGDDLYGGTDRLLSRVTPKTG  118 (265)
Q Consensus        47 ~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~~~~g~-------~viv~~~~~~~~~~~~~~~~~~~g  118 (265)
                      ..|+  |.+...++++.+++++|.+.+++++||++|.. ++..++++|+       .++.....+..+.    ......|
T Consensus        69 ~~y~--~~~~~~~le~~~a~l~g~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~~h~~t~~----~~~~~~g  142 (465)
T d1ax4a_          69 EAYA--GSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTA----AHVELNG  142 (465)
T ss_dssp             CCSS--SCHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHH----HHHHHTT
T ss_pred             hhhc--cChHHHHHHHHHHHHHCCCEEEECCCcHHHHHHHHHHHHHHHHhcCCCCCeEEeccchhhhhH----HHHHHcC
Confidence            3454  44788899999999999999999999998875 5555554433       3444444333332    3334456


Q ss_pred             eEEEeecC---------------CCHHHHHhhcC----CCceEEEEecCCCCcccc-c---cHHHHHHHHHHcCCEEEEe
Q 024619          119 VVVKRVNT---------------CDLDEVASAIG----PWTKLVWVESPTNPRQQI-C---DIRKIAEMAHAHGALLLVD  175 (265)
Q Consensus       119 ~~~~~~~~---------------~d~~~l~~~~~----~~~~~i~~~~~~np~G~~-~---~l~~i~~~a~~~~~~li~D  175 (265)
                      ..++.+..               .|.+++++++.    ..+.+++++.++|..|.. .   ++++|.++|++||+++++|
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D  222 (465)
T d1ax4a_         143 CKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMD  222 (465)
T ss_dssp             CEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEE
T ss_pred             CeeecccccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEE
Confidence            66665431               27888888875    245677778777766543 3   5789999999999999999


Q ss_pred             CCcCCCCCc-----CCC-------------CCCccEEEeccccccccCCCceeeEEEeechh
Q 024619          176 NSIMSPVLS-----RPL-------------ELGADIVMHSATKFIAGHSDVMAGVLAVKGER  219 (265)
Q Consensus       176 ~~~~~~~~~-----~~~-------------~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~  219 (265)
                      ++|..+...     .+.             ..-.|++.+|.+|.++++.   +|+++.++..
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~~~~---~g~l~~~~~~  281 (465)
T d1ax4a_         223 SARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNI---GGLVAIRDNE  281 (465)
T ss_dssp             CTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSS---CEEEEESSCH
T ss_pred             CcchhhhhcccccccccccccchhhhccccccccceeEeecccCccccc---ceeEeecchH
Confidence            998643210     000             0125789999999875543   5888777643

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.31  E-value=1.5e-11  Score=105.91  Aligned_cols=230  Identities=13%  Similarity=0.126  Sum_probs=138.4

Q ss_pred             cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCC--CChhHHHHHHHHHhHhCCCceEEecchHHHHH
Q 024619            9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRS--GNPTRDALESLLAKLDKADRALCFTSGMAALA   84 (265)
Q Consensus         9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~--g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~   84 (265)
                      .+.++++|.+  ++..+|...|.+..+.+-+...      ..|...  .....+.+++.+.++.+.+.+.+.++|++|..
T Consensus        37 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~sgs~a~~  110 (404)
T d1z7da1          37 NDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKN------LTICSRAFFSVPLGICERYLTNLLGYDKVLMMNTGAEANE  110 (404)
T ss_dssp             TCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTT------CSCCCTTSEEHHHHHHHHHHHHHHTCSEEEEESSHHHHHH
T ss_pred             CCCEEEEccccHHHHhhhcCcHHHHHHHHHHHHh------CCCcccccchHHHHHHHHhhhhccccceeeeeccccchHH
Confidence            4578888864  3556888877776665432222      122222  22357788888999999998999999998874


Q ss_pred             -HHHHh---------c-CCCCEEEEcCCCCCChHHHHHhhcCCCC---------eEEEeecCCCHHHHHhhcC-CCceEE
Q 024619           85 -AVTHL---------L-GTGEEIVAGDDLYGGTDRLLSRVTPKTG---------VVVKRVNTCDLDEVASAIG-PWTKLV  143 (265)
Q Consensus        85 -~~~~~---------~-~~g~~viv~~~~~~~~~~~~~~~~~~~g---------~~~~~~~~~d~~~l~~~~~-~~~~~i  143 (265)
                       ++...         . .....++.....|+..............         ..+...+.++.+.+...+. +++.+|
T Consensus       111 ~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAav  190 (404)
T d1z7da1         111 TAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELKDPNVCAF  190 (404)
T ss_dssp             HHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECTTCHHHHHHHHTSTTEEEE
T ss_pred             HHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccccCCCCCCccccccccchHHHHHHHhcCCCEEEE
Confidence             32211         1 1223566666666655322111111111         1233345668888888876 568999


Q ss_pred             EEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCc-----CCCCCCccEEEeccccccccCCCceeeEE
Q 024619          144 WVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVL  213 (265)
Q Consensus       144 ~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~-----~~~~~~~di~~~s~sK~~~g~~g~~~G~v  213 (265)
                      +++..+...|.+.+    +++|.++|++||+++|+||++. .|-.+     ...+..+|++  +++|.+++ +.+.+|.+
T Consensus       191 i~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~~~e~~gv~PDiv--t~gK~l~g-G~~p~~~v  267 (404)
T d1z7da1         191 IVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVI--LLGKALSG-GHYPISAV  267 (404)
T ss_dssp             EECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-TSSCCEEE
T ss_pred             EEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccccccccccCCCCCEE--EEcccccC-CCCCcccc
Confidence            99998888888865    8999999999999999999984 32222     2234468988  56999954 33557888


Q ss_pred             EeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619          214 AVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      +.+++.. +.........+..-+|..++..++.|+
T Consensus       268 ~~~~~i~-~~~~~~~~~~T~~gnpl~~aaa~a~L~  301 (404)
T d1z7da1         268 LANDDIM-LVIKPGEHGSTYGGNPLAASICVEALN  301 (404)
T ss_dssp             EECHHHH-TTCCTTCCCCTTTTCHHHHHHHHHHHH
T ss_pred             cchHHHH-ccCCCCCcCcCCCCCcchhhhhhhhhh
Confidence            7777543 322222222233445666666555554

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.31  E-value=8.5e-11  Score=100.96  Aligned_cols=159  Identities=22%  Similarity=0.207  Sum_probs=113.8

Q ss_pred             CChhHHHHH----HHHHhHhCCC-----ceEEecchHHHH-HHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCC-----
Q 024619           53 GNPTRDALE----SLLAKLDKAD-----RALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT-----  117 (265)
Q Consensus        53 g~~~~~~l~----~~l~~~~g~~-----~~i~~~~g~~al-~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~-----  117 (265)
                      |....+++|    ++..++||.+     ..+-..||+.|. .++.++++|||+|+..+....+..... ......     
T Consensus        71 G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~SGs~An~av~~all~pgD~im~~~l~~GGHlshg-~~~~~~~~~~~  149 (470)
T d1rv3a_          71 GTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHG-FMTDKKKISAT  149 (470)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGC-CBCSSCBCSHH
T ss_pred             CchhHHHHHHHHHHHHHHHhCCChhhccccccccCCccHHHHHHHHhcCCCCeEeeeccccCCccccc-ccccCCCcccc
Confidence            554444444    5557889886     355666888776 588999999999998776655543110 000000     


Q ss_pred             --CeEEEeecC------CCHHHHHhhcC-CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcC-----CCCC
Q 024619          118 --GVVVKRVNT------CDLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIM-----SPVL  183 (265)
Q Consensus       118 --g~~~~~~~~------~d~~~l~~~~~-~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~-----~~~~  183 (265)
                        ..+....++      .|.+++++... .++++|++....+|  ...|.+++.++|++.|++++.|.+|-     .|.+
T Consensus       150 ~~~~~~~~y~v~~~~~~IDyd~l~~~a~~~kPklIi~G~S~y~--r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~  227 (470)
T d1rv3a_         150 SIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCYS--RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVV  227 (470)
T ss_dssp             HHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSS
T ss_pred             cceeEeeEEEEecccCcccHHHHHHHHHhhCcceEeechhhcc--ccCCHHHHHHHHhccCCeEEecchhhhhhcccccc
Confidence              123444332      27888888775 57999888666554  46799999999999999999999995     4556


Q ss_pred             cCCCCCCccEEEeccccccccCCCceeeEEEeech
Q 024619          184 SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE  218 (265)
Q Consensus       184 ~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~  218 (265)
                      ++|... .|++++|.||+|.||.   +|+|..++.
T Consensus       228 ~sPl~~-aDvvt~tTHKtlrGPr---gGiI~~~~~  258 (470)
T d1rv3a_         228 PSPFEH-CHVVTTTTHKTLRGCR---AGMIFYRRG  258 (470)
T ss_dssp             CCGGGT-CSEEEEESSGGGCCCS---CEEEEEECS
T ss_pred             CChhhe-eeeeeeehhhhccCCc---ceEEEEccc
Confidence            788866 6999999999999986   599988764

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=99.30  E-value=1.7e-11  Score=106.25  Aligned_cols=230  Identities=14%  Similarity=0.124  Sum_probs=141.3

Q ss_pred             CcceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCC-CceEEecchHHHHH
Q 024619            8 GVSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA-DRALCFTSGMAALA   84 (265)
Q Consensus         8 ~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~-~~~i~~~~g~~al~   84 (265)
                      ..+.++|+|.+  +...+|...|.+.++...+...      ..+..........+++.+.+..+. +.+.+.+||++|+.
T Consensus        49 ~~G~~ylD~~~~~~~~~lGh~hp~i~~ai~~~~~~------~~~~~~~~~~~~~la~~~~~~~~~~~~v~f~~sGseA~e  122 (427)
T d2gsaa_          49 VDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEK------GTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACM  122 (427)
T ss_dssp             TTSCEEEESSGGGTTTTTCBTCHHHHHHHHHHHTT------CSCCSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHH
T ss_pred             CCCCEEEEechhHHHHhccCCcHHHHHHHHHHHHh------cCccccchhHHHHHHHHHHhhCCccccccccCCcHHHHH
Confidence            34578899954  3566899777776665433222      112222335567788888887644 45778889999986


Q ss_pred             HHHHh---cCCCCEEEEcCCCCCChHHHHHhh---------c-CC------CCeEEEeecCCCHHHHHhhcC---CCceE
Q 024619           85 AVTHL---LGTGEEIVAGDDLYGGTDRLLSRV---------T-PK------TGVVVKRVNTCDLDEVASAIG---PWTKL  142 (265)
Q Consensus        85 ~~~~~---~~~g~~viv~~~~~~~~~~~~~~~---------~-~~------~g~~~~~~~~~d~~~l~~~~~---~~~~~  142 (265)
                      ....+   ....++|+....+|++........         . ..      ...+...++..|++++++.+.   .++.+
T Consensus       123 ~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~iaa  202 (427)
T d2gsaa_         123 AVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAG  202 (427)
T ss_dssp             HHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEECTTCHHHHHHHHTTSTTTEEE
T ss_pred             HHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccCcchHHHHHHHHHhCCCCeEE
Confidence            33332   334677888888887653110000         0 00      011234455678999988886   46889


Q ss_pred             EEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCCCCc-----CCCCCCccEEEeccccccccCCCceeeEE
Q 024619          143 VWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVL  213 (265)
Q Consensus       143 i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~~~~~~di~~~s~sK~~~g~~g~~~G~v  213 (265)
                      |+++......|.+.+    +++|.++|++||+++|.||++.....+     ...+..+|+++.  +|.+++  |+..|.+
T Consensus       203 vi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~r~g~~~~~~~~gi~PDi~~~--gK~lgg--G~p~~a~  278 (427)
T d2gsaa_         203 VILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIAYGGVQEKFGVTPDLTTL--GKIIGG--GLPVGAY  278 (427)
T ss_dssp             EEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBTTCHHHHTTCCCSEEEE--CGGGGT--TSCCEEE
T ss_pred             EEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccceecccchHHhcCCCHHHHhh--hhccCC--Ccceeee
Confidence            999988877888866    999999999999999999999522112     122335799864  888754  4567777


Q ss_pred             EeechhHHHHHHHH---HHhccCCCChhHHHHHHhccC
Q 024619          214 AVKGERLAKELYFL---QNAEGSGLAPFDCWICLRGVK  248 (265)
Q Consensus       214 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~  248 (265)
                      +++++.. +.+...   ....+..-+|..++..+..|+
T Consensus       279 ~~~~~i~-~~~~~~~~~~~~~T~~gnpla~AAala~Le  315 (427)
T d2gsaa_         279 GGKREIM-QLVAPAGPMYQAGTLSGNPLAMTAGIKTLE  315 (427)
T ss_dssp             EECHHHH-TTBTTTSSBCCCCTTTTCHHHHHHHHHHHH
T ss_pred             eehHHHH-HHhcccCCCcCCCCCCCCchhhHHHHHhhH
Confidence            7766543 322111   111233445666655444443

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=99.26  E-value=1.3e-11  Score=105.74  Aligned_cols=156  Identities=21%  Similarity=0.209  Sum_probs=104.9

Q ss_pred             hHHHH-HHHHHhHhCCCc-----eEEecchHHHH-HHHHHhcCCCCEEEEcCCCCCChHHHHH----hhcCCCCe--EEE
Q 024619           56 TRDAL-ESLLAKLDKADR-----ALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLS----RVTPKTGV--VVK  122 (265)
Q Consensus        56 ~~~~l-~~~l~~~~g~~~-----~i~~~~g~~al-~~~~~~~~~g~~viv~~~~~~~~~~~~~----~~~~~~g~--~~~  122 (265)
                      ..|.+ .++.+++|+++.     .+-..||+.|. .++.++++|||+|+..++.+.+......    .-....|.  +..
T Consensus        73 ~iE~la~~ra~~lF~~~~a~w~vNVqp~SGs~An~av~~all~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~  152 (463)
T d2a7va1          73 EIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESM  152 (463)
T ss_dssp             HHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCCSCEECCC------------------------------
T ss_pred             HHHHHHHHHHHHHhCCCchhccCCccccccHHHHHHHHHHHcCCCceEEeeccCcCcccccccccccccccceeeEeeee
Confidence            34444 466778899984     47777898775 6889999999999977766554432110    00111222  222


Q ss_pred             eecC------CCHHHHHhhcC-CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcC-----CCCCcCCCCCC
Q 024619          123 RVNT------CDLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIM-----SPVLSRPLELG  190 (265)
Q Consensus       123 ~~~~------~d~~~l~~~~~-~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~-----~~~~~~~~~~~  190 (265)
                      ....      .|.+++++... .++++|++....+|  ...|.+++.++|++.|++++.|.+|-     .+.+++|... 
T Consensus       153 ~Y~~d~~~~~IDyd~~~~~a~~~kPklIi~G~S~y~--r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~~~-  229 (463)
T d2a7va1         153 PYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYA--RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKH-  229 (463)
T ss_dssp             -CCBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGT-
T ss_pred             eeeccCCCCcCcHHHHHHHHhhcCCceEEecccccc--cccCHHHHHHHhhcccceEEechhhhhHHhhhhhhcChhhh-
Confidence            2221      28888888875 58999988666554  46799999999999999999999995     5566788866 


Q ss_pred             ccEEEeccccccccCCCceeeEEEeec
Q 024619          191 ADIVMHSATKFIAGHSDVMAGVLAVKG  217 (265)
Q Consensus       191 ~di~~~s~sK~~~g~~g~~~G~v~~~~  217 (265)
                      .|++++|.||+|.||.   +|+|.+++
T Consensus       230 aDvvt~tTHKTlrGPr---gGiIl~~~  253 (463)
T d2a7va1         230 ADIVTTTTHKTLRGAR---SGLIFYRK  253 (463)
T ss_dssp             CSEEEEESSGGGCSCS---CEEEEEEC
T ss_pred             hhhhhchhhhhhcCCC---ceEEEEcc
Confidence            6999999999999986   69998876

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=99.25  E-value=7.7e-12  Score=107.77  Aligned_cols=163  Identities=20%  Similarity=0.201  Sum_probs=124.0

Q ss_pred             CCh-hHHHHHHHHHhHhCCC-ceEEecchHHHH-HHHHHh--cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC
Q 024619           53 GNP-TRDALESLLAKLDKAD-RALCFTSGMAAL-AAVTHL--LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC  127 (265)
Q Consensus        53 g~~-~~~~l~~~l~~~~g~~-~~i~~~~g~~al-~~~~~~--~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  127 (265)
                      |.. ...++++.++++.|.+ ...-...|++|. ..++..  ....+.++++...|+.+.......++..|++++.++.+
T Consensus       105 G~Lq~l~e~q~~l~eltGmd~~n~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~~~p~~~~v~~t~a~~~g~~vv~v~~~  184 (437)
T d1wyua1         105 GVLQATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLE  184 (437)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCB
T ss_pred             HHHHHHHHHHHHHHHhhCCCccccCchHHHHHHHHHHHHHHhhhcccccccccccChHHhhhhhhhcccceeeEEeeecc
Confidence            443 3779999999999999 344455666554 333222  33467889999999999888888888899999999987


Q ss_pred             CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCC-cCCCCCcCCCCCCccEEEecccc------
Q 024619          128 DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS-IMSPVLSRPLELGADIVMHSATK------  200 (265)
Q Consensus       128 d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~-~~~~~~~~~~~~~~di~~~s~sK------  200 (265)
                      +.......+.+++.+|++.+|+. .|.+.+++++++++++.|.+++.|.. .+.+.+..|.+.|+||++++ +|      
T Consensus       185 ~~~~~~~~~~~~~Aavmi~~Pnt-~G~~ed~~~i~~~~h~~G~l~~~~ad~~al~~l~~Pg~~GaDi~~g~-~q~fg~p~  262 (437)
T d1wyua1         185 GGRTPLPEVGEEVGAVVVQNPNF-LGALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPPGAYGADIAVGD-GQSLGLPM  262 (437)
T ss_dssp             TTBCCCCCCCTTEEEEEEESSCT-TSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCCHHHHTCSEEEEE-CTTTTCCC
T ss_pred             cccchhhhhccceeEEEEccccc-cccccchHHHHHHhhhccceEEeeechhhhhccccccccccceEeec-cceecccc
Confidence            65555555778999999999954 89999999999999999998887743 34555667889999999999 55      


Q ss_pred             ccccCCCceeeEEEeechhH
Q 024619          201 FIAGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       201 ~~~g~~g~~~G~v~~~~~~~  220 (265)
                      .++||.   .|++.++++..
T Consensus       263 g~GGP~---~G~~a~~~~l~  279 (437)
T d1wyua1         263 GFGGPH---FGFLATKKAFV  279 (437)
T ss_dssp             GGGCSC---CEEEEECGGGG
T ss_pred             CCCcCc---cccccccchhh
Confidence            444443   48888887554

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=1.9e-10  Score=99.43  Aligned_cols=233  Identities=13%  Similarity=0.108  Sum_probs=138.4

Q ss_pred             cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCC---CceEEecchHHHH
Q 024619            9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA---DRALCFTSGMAAL   83 (265)
Q Consensus         9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~---~~~i~~~~g~~al   83 (265)
                      .+.++|+|.+  ++..+|...|++..+..-+...   ..........++...++.+.+.++...   +.+.+.+||++|.
T Consensus        38 dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~---~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~  114 (425)
T d1sffa_          38 EGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKK---LSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAV  114 (425)
T ss_dssp             TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTT---CSCCCTTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHH
T ss_pred             CCCEEEEcCcCHHhhcccCCcHHHHHHHHHHHhh---cCCcccccccCcHHHHHHHHHHhhhhhcccceeeeeccccchh
Confidence            4578999864  3666999888888776433221   111111111345677888888888743   3467778999998


Q ss_pred             HHHHHh---cCCCCEEEEcCCCCCChHHHHHhhcCCC----------CeEEEeecCC-------------CHHHHHhhc-
Q 024619           84 AAVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTPKT----------GVVVKRVNTC-------------DLDEVASAI-  136 (265)
Q Consensus        84 ~~~~~~---~~~g~~viv~~~~~~~~~~~~~~~~~~~----------g~~~~~~~~~-------------d~~~l~~~~-  136 (265)
                      ...+.+   .....+|+....+|++............          .......+.+             +.+++.... 
T Consensus       115 e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (425)
T d1sffa_         115 ENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDA  194 (425)
T ss_dssp             HHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTC
T ss_pred             hhHHHHhhhhhcccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCccccccccchhhHHHHHHHHHhcc
Confidence            533332   3345778888888887654322221110          0011111111             112222111 


Q ss_pred             -CCCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCC-CCCc-----CCCCCCccEEEeccccccccC
Q 024619          137 -GPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLS-----RPLELGADIVMHSATKFIAGH  205 (265)
Q Consensus       137 -~~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~~-~~~~-----~~~~~~~di~~~s~sK~~~g~  205 (265)
                       ..++.+|+++......|.+.+    ++.|.++|++||+++|+||++.. +-.+     ......+|+++  ++|.+++ 
T Consensus       195 ~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~~a~~~~gv~PDi~~--~gK~l~g-  271 (425)
T d1sffa_         195 APEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTT--FAKSIAG-  271 (425)
T ss_dssp             CGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEEE--ECGGGGT-
T ss_pred             cccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchhhHHHhcCCCcccee--cccccCC-
Confidence             246889999988777776643    79999999999999999999863 3332     22344689886  6999954 


Q ss_pred             CCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccCc
Q 024619          206 SDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT  249 (265)
Q Consensus       206 ~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  249 (265)
                       |+..|.++++++.. +.+.......+..-+|..++..++.|+.
T Consensus       272 -G~P~~av~~~~~i~-~~~~~~~~~~T~~gnpl~~aaa~a~L~~  313 (425)
T d1sffa_         272 -GFPLAGVTGRAEVM-DAVAPGGLGGTYAGNPIACVAALEVLKV  313 (425)
T ss_dssp             -SSCCEEEEEEHHHH-TTSCTTSBCCSSSSCHHHHHHHHHHHHH
T ss_pred             -CcceEEEEEcHHHH-HhhCCCCCCCCCCcCHHHHHHHHHHHHH
Confidence             46778888877543 3222222223344446666665555554

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=99.04  E-value=2e-09  Score=87.96  Aligned_cols=176  Identities=16%  Similarity=0.154  Sum_probs=99.0

Q ss_pred             CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCC--ceEEecchHHHHH-HHHHhcCCCCE
Q 024619           19 EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD--RALCFTSGMAALA-AVTHLLGTGEE   95 (265)
Q Consensus        19 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~--~~i~~~~g~~al~-~~~~~~~~g~~   95 (265)
                      .|||.....|.++++.+ ...   ......|+.  .+..+++++.+++++|++  +++++++|++|+. ++..+..+++.
T Consensus         5 ~nd~~~g~~P~v~eAl~-~~~---~~~~~~y~~--~~~~~~lr~~ia~~~g~~~~~v~~tsggtean~~a~~~~~~~~~~   78 (340)
T d1svva_           5 VNDYSVGMHPKILDLMA-RDN---MTQHAGYGQ--DSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALRPWEA   78 (340)
T ss_dssp             SCSCSSCCCHHHHHHHH-HHT---TCCCCSTTC--SHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCCTTEE
T ss_pred             ccCCCCCCCHHHHHHHH-HHh---hcCCCCCCC--CHHHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHHhhhccc
Confidence            36775544444444432 111   112233432  367899999999999987  3555667788885 77788999999


Q ss_pred             EEEcCCCCCChHHHHHhhcCCCCeEEEeec---CCCHHHHHhhc---C---CCce-EEEEecCCCCccccc---cHHHHH
Q 024619           96 IVAGDDLYGGTDRLLSRVTPKTGVVVKRVN---TCDLDEVASAI---G---PWTK-LVWVESPTNPRQQIC---DIRKIA  162 (265)
Q Consensus        96 viv~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~d~~~l~~~~---~---~~~~-~i~~~~~~np~G~~~---~l~~i~  162 (265)
                      +++..+.|.++.... .............+   ..+.+...++.   .   .... ++++..++| .|.+.   ++..+.
T Consensus        79 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  156 (340)
T d1svva_          79 VIATQLGHISTHETG-AIEATGHKVVTAPCPDGKLRVADIESALHENRSEHMVIPKLVYISNTTE-VGTQYTKQELEDIS  156 (340)
T ss_dssp             EEEETTSHHHHSSTT-HHHHTTCCEEEECCTTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCT-TSCCCCHHHHHHHH
T ss_pred             cccccccceeeeecc-cccccceeeeecccccccccchhHHHHhhhhhcccCCcceeeeeccccc-ccccccHHHhhhhh
Confidence            998888765543221 11122222222222   11222222221   1   2233 444455544 45543   577889


Q ss_pred             HHHHHcCCEEEEeCCcCCCCCcCCC--------CCCccEEEecccccc
Q 024619          163 EMAHAHGALLLVDNSIMSPVLSRPL--------ELGADIVMHSATKFI  202 (265)
Q Consensus       163 ~~a~~~~~~li~D~~~~~~~~~~~~--------~~~~di~~~s~sK~~  202 (265)
                      +.|+++|.+++.|+++..+......        ....++...+..|..
T Consensus       157 ~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (340)
T d1svva_         157 ASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAG  204 (340)
T ss_dssp             HHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTT
T ss_pred             cccccccceeeeeccceeeeecccccccccccccccceeeecCCcccc
Confidence            9999999999999998643332111        112346666666655

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=99.03  E-value=6.8e-10  Score=96.07  Aligned_cols=204  Identities=15%  Similarity=0.098  Sum_probs=125.6

Q ss_pred             cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHh--CCCceEEecchHHHHH
Q 024619            9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD--KADRALCFTSGMAALA   84 (265)
Q Consensus         9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~--g~~~~i~~~~g~~al~   84 (265)
                      .+.++|+|.+  ++..+|...|.+..+..-+...    ..+.....-++...++.++|.++.  +.+.+.+.+||++|+.
T Consensus        39 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~----~~~~~~~~~~~~~~~la~~L~~~~~~~~~~v~f~~sGseA~e  114 (431)
T d1zoda1          39 DGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGK----LDHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNE  114 (431)
T ss_dssp             TCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHH----CCCCCTTCCCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHH
T ss_pred             CCCEEEEcccCHHhhhhcCCCHHHHHHHHHHHhh----ccccccccccHHHHHHHHHHHHhCCcccceeeecccccchHH
Confidence            4578999954  3667999887777765433221    111222223355778888888876  4567888899999986


Q ss_pred             HHHHh---cCCCCEEEEcCCCCCChHHHHHhhcCC----------CCeEEEeecCC---------------CHHHHHhhc
Q 024619           85 AVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTPK----------TGVVVKRVNTC---------------DLDEVASAI  136 (265)
Q Consensus        85 ~~~~~---~~~g~~viv~~~~~~~~~~~~~~~~~~----------~g~~~~~~~~~---------------d~~~l~~~~  136 (265)
                      ..+.+   ....+.|+.....|++...........          .+...+..+..               +.+.+...+
T Consensus       115 ~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (431)
T d1zoda1         115 AAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLI  194 (431)
T ss_dssp             HHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCcceeecccccccccchhhcccccccccccCCcccCceeeeeecccccccccccchhhhhhHHHHHHHH
Confidence            33322   344677888888888765332121111          11111111110               123332222


Q ss_pred             ----CCCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCC-CCCcC-----CCCCCccEEEecccccc
Q 024619          137 ----GPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLSR-----PLELGADIVMHSATKFI  202 (265)
Q Consensus       137 ----~~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~~-~~~~~-----~~~~~~di~~~s~sK~~  202 (265)
                          .+++.+|+++......|.+.+    +++|.++|++||+++|.||++.. |-.+.     .....+|+++  ++|.+
T Consensus       195 ~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~~~~gv~PDi~~--~gK~l  272 (431)
T d1zoda1         195 DRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILT--LSKTL  272 (431)
T ss_dssp             HHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEE--ECHHH
T ss_pred             HHhccccccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEeccccccccccccccccccCCCCcchhc--ccccc
Confidence                357899999988776677654    89999999999999999999862 43332     1234679886  58988


Q ss_pred             ccCCCceeeEEEeechhH
Q 024619          203 AGHSDVMAGVLAVKGERL  220 (265)
Q Consensus       203 ~g~~g~~~G~v~~~~~~~  220 (265)
                      ++.  +..+.++.+++..
T Consensus       273 ~gG--~p~~av~~~~~~~  288 (431)
T d1zoda1         273 GAG--LPLAAIVTSAAIE  288 (431)
T ss_dssp             HTT--SSCEEEEECHHHH
T ss_pred             ccc--cccceeeeeecch
Confidence            543  4456666666544

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=99.02  E-value=1.1e-10  Score=98.68  Aligned_cols=145  Identities=12%  Similarity=0.015  Sum_probs=104.2

Q ss_pred             hHHHHHHHHHhHhCCCc--eEEe-cchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC---
Q 024619           56 TRDALESLLAKLDKADR--ALCF-TSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~~--~i~~-~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---  127 (265)
                      ..+++++.++++++.++  .+++ ++++ .++. ++..+..+|+.+++..  +..+...|...++..|.++..+..+   
T Consensus        49 ~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ea~~~~l~~~~~~~l~~~--~g~~~~~~~~~~~~~g~~~~~~~~~~~~  126 (361)
T d2c0ra1          49 VHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFLKEGQTANYVM--TGSWASKALKEAKLIGDTHVAASSEASN  126 (361)
T ss_dssp             HHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEE--CSHHHHHHHHHHHHHSCEEEEEECGGGT
T ss_pred             HHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhccccCCCceEEEe--echhhhhhhhhhhhcCceeeeecccccc
Confidence            47889999999999863  4444 4444 4444 4556788888887543  3445666667788888888877643   


Q ss_pred             --CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccC
Q 024619          128 --DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGH  205 (265)
Q Consensus       128 --d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~  205 (265)
                        +++.+++.+..++ .+.   .+|.||.+.++++|.++|+++|+++++|.+++.|..+...+ +.|+.+.|.+|.++.|
T Consensus       127 ~~~~~~~~~~~~~~~-~~~---v~~~tg~~~~~~~i~~~~~~~~al~~vDavss~g~~~id~~-~~di~~~s~~k~~~~~  201 (361)
T d2c0ra1         127 YMTLPKLQEIQLQDN-AAY---LHLTSNETIEGAQFKAFPDTGSVPLIGDMSSDILSRPFDLN-QFGLVYAGAQKNLGPS  201 (361)
T ss_dssp             TCSCCCGGGCCCCTT-EEE---EEEESEETTTTEECSSCCCCTTSCEEEECTTTTTSSCCCGG-GCSEEEEETTTTTCCS
T ss_pred             ccchhhhhhhcccCc-ceE---EEEecccceecceEEEeeccCCceEEEEeeccccccccccc-cceeEEEecccccccc
Confidence              5666666665443 333   34678999999999999999999999999999988763333 3567777889999655


Q ss_pred             CC
Q 024619          206 SD  207 (265)
Q Consensus       206 ~g  207 (265)
                      ++
T Consensus       202 ~~  203 (361)
T d2c0ra1         202 GV  203 (361)
T ss_dssp             SC
T ss_pred             cC
Confidence            54

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=98.94  E-value=6.3e-09  Score=89.74  Aligned_cols=234  Identities=12%  Similarity=0.031  Sum_probs=131.7

Q ss_pred             cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCC--CceEEecchHHHHH
Q 024619            9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA--DRALCFTSGMAALA   84 (265)
Q Consensus         9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~--~~~i~~~~g~~al~   84 (265)
                      .+.++|+|.++  +..+|...|.+..+..-+...   .....+....++...++.+++.+....  +.+.+.++|++|+.
T Consensus        41 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~---~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~f~~sGseA~e  117 (429)
T d1s0aa_          41 DGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDA---MSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVE  117 (429)
T ss_dssp             TSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHH---CSCCCCSSEECHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHH
T ss_pred             CCCEEEECcccHHHHhhcCCcHHHHHHHHHHHHh---cCCcccCCccchHHHHHHHHHHhhhccCcceeeeccccccchh
Confidence            45689999643  556898887777765422211   111122222334566667777766533  45778889998885


Q ss_pred             HHHHhc--------CCCCEEEEcCCCCCChHHHHHhhcCCC----------CeEEEeec-----------CCCHHHHHhh
Q 024619           85 AVTHLL--------GTGEEIVAGDDLYGGTDRLLSRVTPKT----------GVVVKRVN-----------TCDLDEVASA  135 (265)
Q Consensus        85 ~~~~~~--------~~g~~viv~~~~~~~~~~~~~~~~~~~----------g~~~~~~~-----------~~d~~~l~~~  135 (265)
                      ....+.        .++.+|+....+|++............          .......+           ..+.+++++.
T Consensus       118 ~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (429)
T d1s0aa_         118 VAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARL  197 (429)
T ss_dssp             HHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHH
T ss_pred             hhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCccccccccCccccccccccccccccccccchhhhhhhhhh
Confidence            332221        234578877787776543221211110          00111111           1134444443


Q ss_pred             c---CCCceEEEEecCC-CCccccc-c---HHHHHHHHHHcCCEEEEeCCcC-CCCCc-----CCCCCCccEEEeccccc
Q 024619          136 I---GPWTKLVWVESPT-NPRQQIC-D---IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADIVMHSATKF  201 (265)
Q Consensus       136 ~---~~~~~~i~~~~~~-np~G~~~-~---l~~i~~~a~~~~~~li~D~~~~-~~~~~-----~~~~~~~di~~~s~sK~  201 (265)
                      +   .+++.+|+++... +..|.+. |   +++|.++|++||+++|.||++. .|-.+     ...+..+|+++  ++|.
T Consensus       198 ~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~~~~~~~v~PDi~~--~gK~  275 (429)
T d1s0aa_         198 MAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILC--LGKA  275 (429)
T ss_dssp             HHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEE--ECGG
T ss_pred             hhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhccccccccccccccccceecccccc--cccc
Confidence            3   4678999999765 4444443 3   8999999999999999999985 33333     22344689986  4898


Q ss_pred             cccCCCceeeEEEeechhHHHHHHHHH-----HhccCCCChhHHHHHHhccCc
Q 024619          202 IAGHSDVMAGVLAVKGERLAKELYFLQ-----NAEGSGLAPFDCWICLRGVKT  249 (265)
Q Consensus       202 ~~g~~g~~~G~v~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~  249 (265)
                      ++ .+++..+.++.+++.. +......     ...+..-++..++..++.|+.
T Consensus       276 l~-gG~~p~~av~~~~~i~-~~~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~  326 (429)
T d1s0aa_         276 LT-GGTMTLSATLTTREVA-ETISNGEAGCFMHGPTFMGNPLACAAANASLAI  326 (429)
T ss_dssp             GG-TSSSCCEEEEECHHHH-HHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHH
T ss_pred             cc-cccccccchhhHHHHH-hccCCCCCcceeecCCCCCCcccchhhhccccc
Confidence            84 3446678887777543 3222111     112233446666655555443

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=98.87  E-value=8.1e-10  Score=92.53  Aligned_cols=155  Identities=12%  Similarity=-0.032  Sum_probs=111.1

Q ss_pred             hHHHHHHHHHhHhCCCc--eEEecch-HHH-HH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC----
Q 024619           56 TRDALESLLAKLDKADR--ALCFTSG-MAA-LA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT----  126 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~~--~i~~~~g-~~a-l~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~----  126 (265)
                      ..+++++.+++++++++  .+++++| +++ +. ++..+..+++.+++....+  +...+...++..+..++....    
T Consensus        47 l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  124 (360)
T d1bjna_          47 VAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGY--WAASAIKEAKKYCTPNVFDAKVTVD  124 (360)
T ss_dssp             HHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCTTCCEEEEEESSH--HHHHHHHHHTTTSEEEEEECEEEET
T ss_pred             HHHHHHHHHHHHhCCCCCCEEEEECCchHHHHhhhhhcccccccccceecccc--hhhhhHHHHhhcCccceeeccccCC
Confidence            37899999999999863  5555544 444 44 4455677788887765444  344455777888887776652    


Q ss_pred             -CCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccC
Q 024619          127 -CDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGH  205 (265)
Q Consensus       127 -~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~  205 (265)
                       .+.+.+++.+..+++++++.+.+|-||...+.+.+.  ++.+++.+++|.+.+.+..... ..+.|+.+.|.+|++++|
T Consensus       125 ~~~~~~~~~~~~~~~~~v~v~~~~~~t~~~~~~~~i~--~~~~~~~v~vDa~~~~~~~~vd-~~~~dv~~~ss~k~~~~~  201 (360)
T d1bjna_         125 GLRAVKPMREWQLSDNAAYMHYCPNETIDGIAIDETP--DFGADVVVAADFSSTILSRPID-VSRYGVIYAGAQKNIGPA  201 (360)
T ss_dssp             TEEEECCGGGCCCCSSCSCEEECSEETTTTEECCCCC--CCCTTCCEEEECTTTTTSSCCC-GGGCSEEEEETTTTTSST
T ss_pred             CcchhhhhhhhccCCceeEEEecccccccCcccccee--cccccceeeeeeeccccceeee-eccceeEEEEcccccccC
Confidence             245666666778888888888999999988776654  4667899999999887777633 346799999999999877


Q ss_pred             CCceeeEEEeec
Q 024619          206 SDVMAGVLAVKG  217 (265)
Q Consensus       206 ~g~~~G~v~~~~  217 (265)
                      +|  +++++...
T Consensus       202 ~~--~~~~~~~~  211 (360)
T d1bjna_         202 GL--TIVIVRED  211 (360)
T ss_dssp             TC--EEEEEEGG
T ss_pred             CC--ceeEeeeh
Confidence            76  35554444

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=98.84  E-value=2.9e-10  Score=95.64  Aligned_cols=151  Identities=11%  Similarity=-0.069  Sum_probs=98.5

Q ss_pred             hHHHHHHHHHhHhCCC--ceEEecchH-HHH-H-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC---
Q 024619           56 TRDALESLLAKLDKAD--RALCFTSGM-AAL-A-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---  127 (265)
Q Consensus        56 ~~~~l~~~l~~~~g~~--~~i~~~~g~-~al-~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---  127 (265)
                      ..+++++.++++++++  ..+++++|+ ++. . +...+..+++.+++....+.  ...+...++..+...+.....   
T Consensus        49 ~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~~~~~~~~~~~~~~~~v~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~  126 (360)
T d1w23a_          49 VHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSW--SEKALKEAKLLGETHIAASTKANS  126 (360)
T ss_dssp             HHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHH--HHHHHHHHHTTSEEEEEEECGGGT
T ss_pred             HHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhhhcccCcccceeeccch--hhhhHHHHHHhhhcceeecccccc
Confidence            4788999999999986  367777776 443 3 34455777788776654333  223345566777776665532   


Q ss_pred             --CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEecccccccc
Q 024619          128 --DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAG  204 (265)
Q Consensus       128 --d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~~~g  204 (265)
                        +.+++.+... .....   +..|.||.+.|+++|.++|+++|+++++|.+++.|... +..++++|++.++-+|+  .
T Consensus       127 ~~~~~~~~~~~~-~~~~~---~~~~~tg~~~~~~~i~~~~~~~g~l~ivDavqs~g~~~id~~~~~vd~~~~~~~k~--~  200 (360)
T d1w23a_         127 YQSIPDFSEFQL-NENDA---YLHITSNNTIYGTQYQNFPEINHAPLIADMSSDILSRPLKVNQFGMIYAGAQKNLG--P  200 (360)
T ss_dssp             SCSCCCGGGCCC-CTTEE---EEEEESEETTTTEECSSCCCCCSSCEEEECTTTTTSSCCCGGGCSEEEEETTTTTS--C
T ss_pred             ccchhhhhhccc-ccccc---eeEecCCccccceeeeeccccceeeEEeeccccccccccccccccceEEeeccccc--c
Confidence              2333333332 22333   34466899999999999999999999999999999886 44456666666555554  3


Q ss_pred             CCCceeeEEEee
Q 024619          205 HSDVMAGVLAVK  216 (265)
Q Consensus       205 ~~g~~~G~v~~~  216 (265)
                      +++  +|+++.+
T Consensus       201 ~~~--~~~~~~~  210 (360)
T d1w23a_         201 SGV--TVVIVKK  210 (360)
T ss_dssp             TTC--EEEEEEH
T ss_pred             CCc--ceeeEec
Confidence            343  3555443

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.83  E-value=4.5e-09  Score=91.50  Aligned_cols=194  Identities=14%  Similarity=0.078  Sum_probs=108.8

Q ss_pred             cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CChhHHHHHHHHHhHhCC--CceEEecchHHHH
Q 024619            9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLDKA--DRALCFTSGMAAL   83 (265)
Q Consensus         9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~g~--~~~i~~~~g~~al   83 (265)
                      .+.++|+|.+  ++..+|...|.+..+..-+.....-.....+... ...+.+++.+.+.+....  +.+++.+||++|+
T Consensus        51 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~~a~~lae~l~~~~~~~~~~v~f~~sGseAv  130 (461)
T d1ohwa_          51 DGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSN  130 (461)
T ss_dssp             TSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCCTTCCEEEEESSHHHHH
T ss_pred             CCCEEEEcccCHHHHhhcCCcHHHHHHHHHHHhhhhhcccccccccchHHHHHHHHHHHHhhhccCcceeeeecchhhhh
Confidence            4567888853  4556888877766554311110000000111111 123466677777666543  4688889999998


Q ss_pred             H-HHHHh----------------------------cCCCCEEEEcCCCCCChHHHHHhhcCC----------CCeEEEee
Q 024619           84 A-AVTHL----------------------------LGTGEEIVAGDDLYGGTDRLLSRVTPK----------TGVVVKRV  124 (265)
Q Consensus        84 ~-~~~~~----------------------------~~~g~~viv~~~~~~~~~~~~~~~~~~----------~g~~~~~~  124 (265)
                      . ++...                            ..++..|+....+|++.......+...          ........
T Consensus       131 e~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~  210 (461)
T d1ohwa_         131 ENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPF  210 (461)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHTCCSCHHHHTTCCCCCCCEECC
T ss_pred             HHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCcCCCCcccccccCCcccccccccccCCccccc
Confidence            6 33322                            122346888888888754322121111          11111111


Q ss_pred             c-C--C--------------CHHHHHhhc------CCCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCC
Q 024619          125 N-T--C--------------DLDEVASAI------GPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNS  177 (265)
Q Consensus       125 ~-~--~--------------d~~~l~~~~------~~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~  177 (265)
                      + .  +              ..+++++.+      ..++.+|+++..+...|.+.+    +++|.++|++||+++|+||+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV  290 (461)
T d1ohwa_         211 PRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEV  290 (461)
T ss_dssp             CCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECT
T ss_pred             ccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeeccccccccccCchhhHHHHHHHHHHhhCcceecccc
Confidence            1 0  0              123333333      356889999998887787643    89999999999999999999


Q ss_pred             cC-CCCCcCC-----C--CCCccEEEecccccccc
Q 024619          178 IM-SPVLSRP-----L--ELGADIVMHSATKFIAG  204 (265)
Q Consensus       178 ~~-~~~~~~~-----~--~~~~di~~~s~sK~~~g  204 (265)
                      +. .|-.+..     .  ...+|++  +++|.+++
T Consensus       291 ~tG~gRtG~~~~~e~~gi~~~PDiv--~~gK~l~~  323 (461)
T d1ohwa_         291 QTGGGSTGKFWAHEHWGLDDPADVM--TFSKKMMT  323 (461)
T ss_dssp             TTCSSTTSSSSGGGGGCCSSCCSEE--EECGGGSS
T ss_pred             ccccccccccccccccccccCchhh--hhhhcccc
Confidence            85 3333211     1  1137888  46898843

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=98.06  E-value=2.6e-05  Score=67.17  Aligned_cols=165  Identities=19%  Similarity=0.246  Sum_probs=106.7

Q ss_pred             CCh-hHHHHHHHHHhHhCCC-ceEEecchHHHH-H-HHH--Hhc-CCC----CEEEEcCCCCCChHHHHHhhcCCCCeEE
Q 024619           53 GNP-TRDALESLLAKLDKAD-RALCFTSGMAAL-A-AVT--HLL-GTG----EEIVAGDDLYGGTDRLLSRVTPKTGVVV  121 (265)
Q Consensus        53 g~~-~~~~l~~~l~~~~g~~-~~i~~~~g~~al-~-~~~--~~~-~~g----~~viv~~~~~~~~~~~~~~~~~~~g~~~  121 (265)
                      |.. ..-+++..++++.|.| .....-.|++|. . +++  ... +.|    ..+.+..+.++......   ....+.++
T Consensus       103 G~LQalfEfQtmi~eLTGMdvaNaS~yDGatA~aeA~~ma~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  179 (471)
T d1wyub1         103 GALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPAT---ASMAGYQV  179 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHH---HHHTTCEE
T ss_pred             HHHHHHHHHHHHHHHHhCCCccccccchHHHHHHHHHHHHHHHhhhcccccccccccCCcccccceeee---eeccccee
Confidence            443 3888999999999999 222333444443 2 222  221 122    23455556666555332   23345666


Q ss_pred             EeecC-----CCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCC--CCcCCCCCCccEE
Q 024619          122 KRVNT-----CDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSP--VLSRPLELGADIV  194 (265)
Q Consensus       122 ~~~~~-----~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~--~~~~~~~~~~di~  194 (265)
                      +.++.     .+.+.+......++.++++.+|++..+...+.+++++++++++..+++|.+....  .+..+...+.|++
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~a~v~v~~p~~~g~~e~~~~~~~~~~h~~g~~~~~~~~~~~~~~~l~~p~~~g~div  259 (471)
T d1wyub1         180 REIPSGPEGEVDLEALKRELGPHVAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWARPGDMGFDVV  259 (471)
T ss_dssp             EEECBCTTSSBCHHHHHHHCSTTEEEEEECSSCTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHHTCSEE
T ss_pred             ecccccccccccchhhhhhhhccccceeeccCCCcccccchhhhhHHHHHhccccccccccchhhhhhccccCccccccc
Confidence            66653     3788888888888999999999775444456899999999999988888664322  2344666788998


Q ss_pred             Eecccccccc-----CCCceeeEEEeechhHHH
Q 024619          195 MHSATKFIAG-----HSDVMAGVLAVKGERLAK  222 (265)
Q Consensus       195 ~~s~sK~~~g-----~~g~~~G~v~~~~~~~~~  222 (265)
                      +.+.++.++.     +|+  .|++.++++....
T Consensus       260 ~vg~~q~~G~P~~~GGP~--~G~~a~~~~~~R~  290 (471)
T d1wyub1         260 HLNLHKTFTVPHGGGGPG--SGPVGVKAHLAPY  290 (471)
T ss_dssp             ECCTTTTTCCCCTTSCCC--CCCEEECGGGGGG
T ss_pred             cccccccccccccccccc--ccceeehhhhhcc
Confidence            8888885532     233  4888888866544

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.40  E-value=3.4  Score=29.63  Aligned_cols=89  Identities=16%  Similarity=0.124  Sum_probs=54.0

Q ss_pred             EEecchH--HHHHHHHHhcCCCCEEEEc--CCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEE-ecC
Q 024619           74 LCFTSGM--AALAAVTHLLGTGEEIVAG--DDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWV-ESP  148 (265)
Q Consensus        74 i~~~~g~--~al~~~~~~~~~g~~viv~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~-~~~  148 (265)
                      |++++|+  -+-.++..+++.|..|.+.  ++.-.       ......+++++..+..|.+++.+++.. ..+|+. .++
T Consensus         6 IlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~-------~~~~~~~~~~~~gD~~d~~~l~~al~~-~d~vi~~~g~   77 (205)
T d1hdoa_           6 IAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRL-------PSEGPRPAHVVVGDVLQAADVDKTVAG-QDAVIVLLGT   77 (205)
T ss_dssp             EEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGS-------CSSSCCCSEEEESCTTSHHHHHHHHTT-CSEEEECCCC
T ss_pred             EEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhc-------ccccccccccccccccchhhHHHHhcC-CCEEEEEecc
Confidence            4445444  4455777778888776543  22211       222446789999999999999998864 444433 322


Q ss_pred             CCCccccc-----cHHHHHHHHHHcCCE
Q 024619          149 TNPRQQIC-----DIRKIAEMAHAHGAL  171 (265)
Q Consensus       149 ~np~G~~~-----~l~~i~~~a~~~~~~  171 (265)
                      .++ ....     -.+.+++.++++++.
T Consensus        78 ~~~-~~~~~~~~~~~~~l~~aa~~~~v~  104 (205)
T d1hdoa_          78 RND-LSPTTVMSEGARNIVAAMKAHGVD  104 (205)
T ss_dssp             TTC-CSCCCHHHHHHHHHHHHHHHHTCC
T ss_pred             CCc-hhhhhhhHHHHHHHHHHHHhcCCC
Confidence            221 1111     135788999999874

>d2al1a1 c.1.11.1 (A:142-436) Enolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: Enolase
domain: Enolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.45  E-value=2  Score=33.39  Aligned_cols=91  Identities=14%  Similarity=0.097  Sum_probs=69.8

Q ss_pred             HHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeec--CCCHHHHHhhcCCC-ceEEEEecCCCCccccccHH
Q 024619           83 LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN--TCDLDEVASAIGPW-TKLVWVESPTNPRQQICDIR  159 (265)
Q Consensus        83 l~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~d~~~l~~~~~~~-~~~i~~~~~~np~G~~~~l~  159 (265)
                      +.....+++.-..|.+.+|....-...|....+..|..++-=+  ..+++.+++.+..+ ..+|++- | |-.|.+.+.-
T Consensus       138 id~y~~li~~YPIisIEDp~~e~D~~gw~~lt~~~g~~iVGDDl~~Tn~~rl~~~i~~~~~nailiK-~-NQiGTvtEt~  215 (295)
T d2al1a1         138 ADLYHSLMKRYPIVSIEDPFAEDDWEAWSHFFKTAGIQIVADDLTVTNPKRIATAIEKKAADALLLK-V-NQIGTLSESI  215 (295)
T ss_dssp             HHHHHHHHHHSCEEEEECCSCTTCHHHHHHHHTTCCSEEEESTTTTTCHHHHHHHHHTTCCSEEEEC-H-HHHCCHHHHH
T ss_pred             HHHHHHHHHhCCEEEecCCcCccchHHHHHHhhccCceeecchhhcccchhhhcchhhhcccceeec-c-cchhhHHHHH
Confidence            3566777776667889999988888888888888888766444  34789999998754 4455543 3 5578999999


Q ss_pred             HHHHHHHHcCCEEEEe
Q 024619          160 KIAEMAHAHGALLLVD  175 (265)
Q Consensus       160 ~i~~~a~~~~~~li~D  175 (265)
                      +.+++|+++|..+|+=
T Consensus       216 ea~~la~~~g~~~ivS  231 (295)
T d2al1a1         216 KAAQDSFAAGWGVMVS  231 (295)
T ss_dssp             HHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHhcCCeeecc
Confidence            9999999999988774

>d2akza1 c.1.11.1 (A:140-433) Enolase {Human (Homo sapiens), gamma isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: Enolase
domain: Enolase
species: Human (Homo sapiens), gamma isoform [TaxId: 9606]

Probab=80.11  E-value=1.7  Score=33.84  Aligned_cols=93  Identities=11%  Similarity=0.100  Sum_probs=70.6

Q ss_pred             HHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeec--CCCHHHHHhhcCCC-ceEEEEecCCCCcccccc
Q 024619           81 AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN--TCDLDEVASAIGPW-TKLVWVESPTNPRQQICD  157 (265)
Q Consensus        81 ~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~d~~~l~~~~~~~-~~~i~~~~~~np~G~~~~  157 (265)
                      +-+.....++++-..|.+.+|....-...|....+..|.+++-=+  ..+++.+++.+..+ ..++++- | |..|.+.+
T Consensus       135 elid~y~~l~~kYPIisIEDP~~E~D~~gw~~lt~~lg~~ivGDDl~vTn~~rl~kgi~~~aanailIK-~-NQiGTltE  212 (294)
T d2akza1         135 QLGALYQDFVRDYPVVSIEDPFDQDDWAAWSKFTANVGIQIVGDDLTVTNPKRIERAVEEKACNCLLLK-V-NQIGSVTE  212 (294)
T ss_dssp             HHHHHHHHHHHHSCEEEEECCSCTTCHHHHHHHHHTCSSEEEESTTTTTCHHHHHHHHHTTCCSEEEEC-H-HHHCCHHH
T ss_pred             HHHHHHHHHhcccCeEEEeCCCcccchhhHHHHHHhcCcEEEccccccccHHHHHHHHhcCcCccceec-c-ccchhHHH
Confidence            334567777777677889999888888888888888887765434  34789999998754 3455543 3 55799999


Q ss_pred             HHHHHHHHHHcCCEEEEe
Q 024619          158 IRKIAEMAHAHGALLLVD  175 (265)
Q Consensus       158 l~~i~~~a~~~~~~li~D  175 (265)
                      .-+.+++|+++|..+|+=
T Consensus       213 t~ea~~la~~~g~~~ivS  230 (294)
T d2akza1         213 AIQACKLAQENGWGVMVS  230 (294)
T ss_dssp             HHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHcCCcEEee
Confidence            999999999999988763