Citrus Sinensis ID: 024624

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-----
MDAASCSGVLSRAKLPVSNLHKFNQTLGSHIVSVSCQSSEGLNNVNRVSSQALAYTVRESYLCGPVQRRNPAGICAAGVATYGENAVEYESHAQAAEDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRYCCVSVNWKFLASSNRFCPAL
ccccccccccccccccccccccccccccccEEEEEcccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccEEEEEEEcccccHHHHHHHHHHccccEEEEEccccccccccHHHHHHHHHHHHHHccccccEEEEcccccccccc
ccccccccccccccccccccccccccccccEEEEccccccccccEEEEcccccccEcccccccccccccccccHHccccccccccccccccccccccccEEEEEEEccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcHHHccEEEEEEEccccccHHHHHHHHHcccccEEEEEEcccccccccHHHHHHHHHHHHHHcccccccEEEccHHHHHccc
mdaascsgvlsraklpvsnlhKFNQTLGSHIVSVScqsseglnnvnrVSSQALAYTVREsylcgpvqrrnpagiCAAGVATYGENAVEYESHAQAAEDKVGVLLLnlggpdtlhdvqpflfnlfadpdiirlprlFRFLQWPLAKLISvvrapkskegyaaigggsplrkITDEQAQALKTALEaknlpvnvyVGMRYWYPFTEEAVQQIKRDRItrlvvlplypqfsisttgSSIRVLQNIFRYCCVSVNWkflassnrfcpal
mdaascsgvlsraklpvSNLHKFNQTLGSHIVSVSCQSSEGLNNVNRVSSQALAYTVRESYLCGPVQRRNPAGICAAGVATYGENAVEYESHAQAAEDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLIsvvrapkskegyaaigggsplrKITDEQAQALKTaleaknlpvnVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLypqfsisttgssIRVLQNIFRYCCVSVNWKFlassnrfcpal
MDAASCSGVLSRAKLPVSNLHKFNQTLGSHIVSVSCQSSEGLNNVNRVSSQALAYTVRESYLCGPVQRRNPAGICAAGVATYGENAVEYESHAQAAEDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRYCCVSVNWKFLASSNRFCPAL
****************VSNLHKFNQTLGSHIVSVSCQSSEGLNNVNRVSSQALAYTVRESYLCGPVQRRNPAGICAAGVATYGENAVEYESHAQAAEDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGG**L**I****AQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRYCCVSVNWKFLASSNRF****
*****************************************************************************************************VLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRYCCVSVNWKFLASSNRFCPAL
*********LSRAKLPVSNLHKFNQTLGSHIVSVSCQSSEGLNNVNRVSSQALAYTVRESYLCGPVQRRNPAGICAAGVATYGENAVEYESHAQAAEDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRYCCVSVNWKFLASSNRFCPAL
****************************SHIVSVSCQSSEGLNNVNRVSSQALAYTVRESYLCGPVQRRNPAGICAAGVATYG*************EDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRYCCVSVNWKFLASSNRFCPAL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
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MDAASCSGVLSRAKLPVSNLHKFNQTLGSHIVSVSCQSSEGLNNVNRVSSQALAYTVRESYLCGPVQRRNPAGICAAGVATYGENAVEYESHAQAAEDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRYCCVSVNWKFLASSNRFCPAL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query265 2.2.26 [Sep-21-2011]
P42044 514 Ferrochelatase-2, chlorop N/A no 0.913 0.470 0.632 4e-81
Q69TB1 482 Ferrochelatase-1, chlorop yes no 0.743 0.408 0.688 6e-74
P42043 466 Ferrochelatase-1, chlorop yes no 0.649 0.369 0.752 1e-73
P42045 484 Ferrochelatase-2, chlorop N/A no 0.645 0.353 0.734 9e-72
A2Y3Q5 526 Ferrochelatase-2, chlorop N/A no 0.554 0.279 0.802 8e-67
Q0DIV0 526 Ferrochelatase-2, chlorop no no 0.554 0.279 0.802 8e-67
O04921 512 Ferrochelatase-2, chlorop no no 0.671 0.347 0.664 7e-64
B7KGB9 387 Ferrochelatase OS=Cyanoth yes no 0.543 0.372 0.678 1e-51
B8HK77 387 Ferrochelatase OS=Cyanoth yes no 0.543 0.372 0.636 3e-50
Q8DGU6 388 Ferrochelatase OS=Thermos yes no 0.539 0.368 0.648 3e-50
>sp|P42044|HEMH_CUCSA Ferrochelatase-2, chloroplastic OS=Cucumis sativus GN=HEMH PE=2 SV=1 Back     alignment and function desciption
 Score =  301 bits (771), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 165/261 (63%), Positives = 190/261 (72%), Gaps = 19/261 (7%)

Query: 1   MDAASCSGVLSRAKLPVS-NLHKFNQTLGS------HIVSVSCQSSEGLNNVNRV----- 48
           MDAAS S  LS  KL  S N    +Q + S        V+ SC++S  L   +R      
Sbjct: 1   MDAASSSLALSNIKLHGSTNTLNSDQRISSLCSLPKSRVTFSCKTSGNLQVRDRSTGLVV 60

Query: 49  ---SSQALAYTVRESYLCGPVQRRNPAG--ICAAGVATYGENAVEYESHAQAAEDKVGVL 103
              SS      ++  +L GP+++++  G   C+ G  T GE A+E  S +QA +DKVGVL
Sbjct: 61  SCSSSNGDRDVIQGLHLSGPIEKKSRLGQACCSVGTFTVGEFALE--SQSQAVDDKVGVL 118

Query: 104 LLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIG 163
           LLNLGGP+TL DVQPFL+NLFADPDIIRLPRLFRFLQ PLAKLIS  RAPKSKEGYA+IG
Sbjct: 119 LLNLGGPETLDDVQPFLYNLFADPDIIRLPRLFRFLQEPLAKLISTYRAPKSKEGYASIG 178

Query: 164 GGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPL 223
           GGSPLRKITDEQAQALK AL  KN+  NVYVGMRYWYPFTEEA+QQIKRD ITRLVVLPL
Sbjct: 179 GGSPLRKITDEQAQALKMALAEKNMSTNVYVGMRYWYPFTEEAIQQIKRDGITRLVVLPL 238

Query: 224 YPQFSISTTGSSIRVLQNIFR 244
           YPQ+SISTTGSSIRVLQ +FR
Sbjct: 239 YPQYSISTTGSSIRVLQKMFR 259
Catalyzes the ferrous insertion into protoporphyrin IX.
Cucumis sativus (taxid: 3659)
EC: 4EC: .EC: 9EC: 9EC: .EC: 1EC: .EC: 1
>sp|Q69TB1|HEMH1_ORYSJ Ferrochelatase-1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os09g0297000 PE=2 SV=1 Back     alignment and function description
>sp|P42043|HEMH1_ARATH Ferrochelatase-1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=HEM15 PE=2 SV=1 Back     alignment and function description
>sp|P42045|HEMH_HORVU Ferrochelatase-2, chloroplastic OS=Hordeum vulgare GN=HEMH PE=2 SV=1 Back     alignment and function description
>sp|A2Y3Q5|HEMH_ORYSI Ferrochelatase-2, chloroplastic OS=Oryza sativa subsp. indica GN=HEMH PE=2 SV=2 Back     alignment and function description
>sp|Q0DIV0|HEMH2_ORYSJ Ferrochelatase-2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0361200 PE=2 SV=1 Back     alignment and function description
>sp|O04921|HEMH2_ARATH Ferrochelatase-2, chloroplastic OS=Arabidopsis thaliana GN=At2g30390 PE=2 SV=1 Back     alignment and function description
>sp|B7KGB9|HEMH_CYAP7 Ferrochelatase OS=Cyanothece sp. (strain PCC 7424) GN=hemH PE=3 SV=1 Back     alignment and function description
>sp|B8HK77|HEMH_CYAP4 Ferrochelatase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=hemH PE=3 SV=1 Back     alignment and function description
>sp|Q8DGU6|HEMH_THEEB Ferrochelatase OS=Thermosynechococcus elongatus (strain BP-1) GN=hemH PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query265
225429458 465 PREDICTED: ferrochelatase-2, chloroplast 0.879 0.501 0.658 7e-84
1170239 514 RecName: Full=Ferrochelatase-2, chloropl 0.913 0.470 0.632 2e-79
356514581 482 PREDICTED: ferrochelatase-2, chloroplast 0.762 0.419 0.694 2e-76
328727190 487 ferrochelatase isoform I [Nicotiana taba 0.690 0.375 0.759 2e-76
147818793 445 hypothetical protein VITISV_021593 [Viti 0.622 0.370 0.832 6e-76
356506948 481 PREDICTED: ferrochelatase-2, chloroplast 0.777 0.428 0.684 1e-75
255640257 459 unknown [Glycine max] 0.777 0.448 0.680 3e-75
255550838 480 ferrochelatase, putative [Ricinus commun 0.698 0.385 0.737 3e-75
224092212 412 predicted protein [Populus trichocarpa] 0.656 0.422 0.767 1e-73
117662170159 ferrochelatase [Cucumis sativus] 0.581 0.968 0.863 5e-73
>gi|225429458|ref|XP_002277290.1| PREDICTED: ferrochelatase-2, chloroplastic [Vitis vinifera] gi|296081616|emb|CBI20621.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  316 bits (809), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 162/246 (65%), Positives = 190/246 (77%), Gaps = 13/246 (5%)

Query: 1   MDAASCSGVLSRAKLPVSNLHKFNQTLGSHIVSVSCQSSEGLNNVNRVSSQALAYTVRES 60
           M+A S S +L   K+   N   FNQ       S+SC  +    + +  SS+ L    + S
Sbjct: 1   MEAVSTSSILPHGKVSGLNHRSFNQK-----SSMSCPQTRSFKSAHCYSSEGL----KGS 51

Query: 61  YLCGPVQRRNPAG--ICAAGVATYGENAVEYESHAQAAEDKVGVLLLNLGGPDTLHDVQP 118
            L   +++RNP G    +AG  TY  +AVE  +HA   E+KVGVLLLNLGGP+TLHDVQP
Sbjct: 52  QLLNSIEKRNPVGQTFSSAGAYTYVGSAVESPTHA--VEEKVGVLLLNLGGPETLHDVQP 109

Query: 119 FLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQA 178
           FLFNLFADPDIIRLPRLF+FLQ PLA+LISV+RAPKSKEGYAAIGGGSPLRKITDEQA A
Sbjct: 110 FLFNLFADPDIIRLPRLFQFLQRPLAQLISVIRAPKSKEGYAAIGGGSPLRKITDEQAHA 169

Query: 179 LKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRV 238
           +K ALEAKN+ VNVYVGMRYWYPFTEEA++QIK+D+ITRLVVLPLYPQFSISTTGSSIRV
Sbjct: 170 IKAALEAKNMHVNVYVGMRYWYPFTEEAIEQIKKDKITRLVVLPLYPQFSISTTGSSIRV 229

Query: 239 LQNIFR 244
           L++IFR
Sbjct: 230 LESIFR 235

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|1170239|sp|P42044.1|HEMH_CUCSA RecName: Full=Ferrochelatase-2, chloroplastic; AltName: Full=Ferrochelatase II; AltName: Full=Heme synthase 2; AltName: Full=Protoheme ferro-lyase 2; Flags: Precursor gi|474968|dbj|BAA05102.1| ferrochelatase [Cucumis sativus] Back     alignment and taxonomy information
>gi|356514581|ref|XP_003525984.1| PREDICTED: ferrochelatase-2, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|328727190|gb|AEB38782.1| ferrochelatase isoform I [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|147818793|emb|CAN67281.1| hypothetical protein VITISV_021593 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356506948|ref|XP_003522235.1| PREDICTED: ferrochelatase-2, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|255640257|gb|ACU20419.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|255550838|ref|XP_002516467.1| ferrochelatase, putative [Ricinus communis] gi|223544287|gb|EEF45808.1| ferrochelatase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224092212|ref|XP_002309511.1| predicted protein [Populus trichocarpa] gi|222855487|gb|EEE93034.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|117662170|gb|ABK55687.1| ferrochelatase [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query265
TAIR|locus:2180642 466 FC1 "ferrochelatase 1" [Arabid 0.626 0.356 0.784 1.3e-66
TIGR_CMR|GSU_3312 317 GSU_3312 "ferrochelatase" [Geo 0.528 0.441 0.468 5e-28
UNIPROTKB|K7ELX4326 FECH "Ferrochelatase, mitochon 0.656 0.533 0.384 1.3e-27
UNIPROTKB|P22830 423 FECH "Ferrochelatase, mitochon 0.656 0.411 0.384 1.3e-27
UNIPROTKB|P22600 416 FECH "Ferrochelatase, mitochon 0.664 0.423 0.390 1.7e-27
RGD|1307556 388 Fech "ferrochelatase" [Rattus 0.543 0.371 0.425 1.7e-27
UNIPROTKB|F1P9A3 423 FECH "Ferrochelatase" [Canis l 0.524 0.328 0.426 1.2e-26
MGI|MGI:95513 420 Fech "ferrochelatase" [Mus mus 0.766 0.483 0.330 1.2e-26
UNIPROTKB|E1C7D2 413 FECH "Ferrochelatase, mitochon 0.558 0.358 0.396 4e-26
UNIPROTKB|F1NBT4 402 FECH "Ferrochelatase, mitochon 0.558 0.368 0.396 4e-26
TAIR|locus:2180642 FC1 "ferrochelatase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
 Identities = 131/167 (78%), Positives = 149/167 (89%)

Query:    78 GVATYGENAVEYESHAQAAEDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFR 137
             G  +Y E + +  SH   AEDK+GVLLLNLGGP+TL+DVQPFL+NLFADPDIIRLPR F+
Sbjct:    69 GDCSYDETSAKARSHV-VAEDKIGVLLLNLGGPETLNDVQPFLYNLFADPDIIRLPRPFQ 127

Query:   138 FLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMR 197
             FLQ  +AK ISVVRAPKSKEGYAAIGGGSPLRKITDEQA A+K +L+AKN+  NVYVGMR
Sbjct:   128 FLQGTIAKFISVVRAPKSKEGYAAIGGGSPLRKITDEQADAIKMSLQAKNIAANVYVGMR 187

Query:   198 YWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFR 244
             YWYPFTEEAVQQIK+D+ITRLVVLPLYPQ+SISTTGSSIRVLQ++FR
Sbjct:   188 YWYPFTEEAVQQIKKDKITRLVVLPLYPQYSISTTGSSIRVLQDLFR 234
GO:0004325 "ferrochelatase activity" evidence=IEA;IGI;ISS
GO:0006783 "heme biosynthetic process" evidence=IEA;ISS;IMP
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0005739 "mitochondrion" evidence=IDA
GO:0009536 "plastid" evidence=IDA
GO:0006979 "response to oxidative stress" evidence=IEP;RCA
GO:0033014 "tetrapyrrole biosynthetic process" evidence=IMP
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0009611 "response to wounding" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA
GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA
GO:0043069 "negative regulation of programmed cell death" evidence=RCA
GO:0052542 "defense response by callose deposition" evidence=RCA
TIGR_CMR|GSU_3312 GSU_3312 "ferrochelatase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|K7ELX4 FECH "Ferrochelatase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P22830 FECH "Ferrochelatase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P22600 FECH "Ferrochelatase, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1307556 Fech "ferrochelatase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1P9A3 FECH "Ferrochelatase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:95513 Fech "ferrochelatase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1C7D2 FECH "Ferrochelatase, mitochondrial" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NBT4 FECH "Ferrochelatase, mitochondrial" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P42043HEMH1_ARATH4, ., 9, 9, ., 1, ., 10.75280.64900.3690yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer4.99.1.10.824
3rd Layer4.99.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00032163001
RecName- Full=Ferrochelatase; EC=4.99.1.1;; Catalyzes the ferrous insertion into protoporphyrin IX (By similarity) (422 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00028229001
SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (549 aa)
• •  •• 0.976
GSVIVG00020543001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (504 aa)
• •  •• 0.975
CHLH
SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (1390 aa)
   • •• 0.963
GSVIVG00027816001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (338 aa)
• ••  • 0.958
GSVIVG00002992001
SubName- Full=Chromosome chr10 scaffold_138, whole genome shotgun sequence; (289 aa)
•  • •• 0.954
GSVIVG00029410001
SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (380 aa)
• ••  • 0.953
GSVIVG00018973001
SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (422 aa)
     •• 0.948
GSVIVG00022232001
SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (747 aa)
•  • •• 0.932
GSVIVG00024034001
RecName- Full=Ferritin; (258 aa)
     •• 0.904
GSVIVG00029357001
RecName- Full=Ferritin; (265 aa)
     •• 0.903

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query265
PLN02449 485 PLN02449, PLN02449, ferrochelatase 1e-106
cd03411159 cd03411, Ferrochelatase_N, Ferrochelatase, N-termi 6e-67
PRK00035 333 PRK00035, hemH, ferrochelatase; Reviewed 6e-66
pfam00762 311 pfam00762, Ferrochelatase, Ferrochelatase 9e-65
COG0276 320 COG0276, HemH, Protoheme ferro-lyase (ferrochelata 1e-61
TIGR00109 322 TIGR00109, hemH, ferrochelatase 4e-59
PRK12435 311 PRK12435, PRK12435, ferrochelatase; Provisional 4e-16
cd03409101 cd03409, Chelatase_Class_II, Class II Chelatase: a 9e-06
>gnl|CDD|178068 PLN02449, PLN02449, ferrochelatase Back     alignment and domain information 
 Score =  316 bits (811), Expect = e-106
 Identities = 131/213 (61%), Positives = 155/213 (72%), Gaps = 4/213 (1%)

Query: 32  VSVSCQSSEGLNNVNRVSSQALAYTVRESYLCGPVQRRNPAGICAAGVATYGENAVEYES 91
            S+S             SS +LA           ++    A   +A      ++      
Sbjct: 26  RSLSLIQCVSSFRSASSSSSSLALRSSSL----RLRANLAASSTSASAVDSPDDDEAVAD 81

Query: 92  HAQAAEDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVR 151
           H + +E+KVGVLLLNLGGP+TL DVQPFL+NLFADPDIIRLPRLFRFLQ PLA+ IS +R
Sbjct: 82  HPKVSEEKVGVLLLNLGGPETLDDVQPFLYNLFADPDIIRLPRLFRFLQKPLAQFISNLR 141

Query: 152 APKSKEGYAAIGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIK 211
           APKSKEGYA+IGGGSPLRKITDEQA+AL  ALEAKNLP  VYVGMRYW+PFTEEA+ QIK
Sbjct: 142 APKSKEGYASIGGGSPLRKITDEQAEALAKALEAKNLPAKVYVGMRYWHPFTEEAIDQIK 201

Query: 212 RDRITRLVVLPLYPQFSISTTGSSIRVLQNIFR 244
            D IT+LVVLPLYPQFSIST+GSS+R+L++IFR
Sbjct: 202 ADGITKLVVLPLYPQFSISTSGSSLRLLESIFR 234

Length = 485
>gnl|CDD|239504 cd03411, Ferrochelatase_N, Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway Back     alignment and domain information
>gnl|CDD|234585 PRK00035, hemH, ferrochelatase; Reviewed Back     alignment and domain information
>gnl|CDD|216106 pfam00762, Ferrochelatase, Ferrochelatase Back     alignment and domain information
>gnl|CDD|223353 COG0276, HemH, Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|232827 TIGR00109, hemH, ferrochelatase Back     alignment and domain information
>gnl|CDD|183526 PRK12435, PRK12435, ferrochelatase; Provisional Back     alignment and domain information
>gnl|CDD|239503 cd03409, Chelatase_Class_II, Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 265
PLN02449 485 ferrochelatase 100.0
cd03411159 Ferrochelatase_N Ferrochelatase, N-terminal domain 100.0
COG0276 320 HemH Protoheme ferro-lyase (ferrochelatase) [Coenz 100.0
PF00762 316 Ferrochelatase: Ferrochelatase; InterPro: IPR00101 100.0
TIGR00109 322 hemH ferrochelatase. Human ferrochelatase, found a 100.0
KOG1321 395 consensus Protoheme ferro-lyase (ferrochelatase) [ 100.0
PRK00035 333 hemH ferrochelatase; Reviewed 100.0
PRK12435 311 ferrochelatase; Provisional 100.0
cd03409101 Chelatase_Class_II Class II Chelatase: a family of 99.34
PRK00923126 sirohydrochlorin cobaltochelatase; Reviewed 98.12
cd03415125 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelata 97.95
cd03414117 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (Cbi 97.88
cd03413103 CbiK_C Anaerobic cobalamin biosynthetic cobalt che 97.84
cd03416101 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (Cbi 97.82
cd03412127 CbiK_N Anaerobic cobalamin biosynthetic cobalt che 97.72
PLN02757154 sirohydrochlorine ferrochelatase 97.63
cd00419135 Ferrochelatase_C Ferrochelatase, C-terminal domain 97.51
PF01903105 CbiX: CbiX; InterPro: IPR002762 Cobalamin (vitamin 97.44
PRK05782 335 bifunctional sirohydrochlorin cobalt chelatase/pre 97.05
COG2138 245 Sirohydrochlorin ferrochelatase [Inorganic ion tra 96.7
PRK02395 279 hypothetical protein; Provisional 96.2
PLN02449485 ferrochelatase 95.74
TIGR00109322 hemH ferrochelatase. Human ferrochelatase, found a 95.73
PRK00035333 hemH ferrochelatase; Reviewed 94.66
PRK02395279 hypothetical protein; Provisional 93.68
PF06180262 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 92.93
PF00762316 Ferrochelatase: Ferrochelatase; InterPro: IPR00101 92.78
PF06180 262 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 90.23
COG0276320 HemH Protoheme ferro-lyase (ferrochelatase) [Coenz 85.36
PRK12435311 ferrochelatase; Provisional 84.11
>PLN02449 ferrochelatase Back     alignment and domain information 
Probab=100.00  E-value=3e-49  Score=386.91  Aligned_cols=179  Identities=70%  Similarity=1.092  Sum_probs=164.8

Q ss_pred             ceeecCccccccccccccCCceEEEEEccCCCCCcCcHHHHHHHhcCCCCcccCchhhhhhhhHHHHHHHhccchhhHhh
Q 024624           79 VATYGENAVEYESHAQAAEDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG  158 (265)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~K~aVLLvNlG~P~s~~dV~~FL~~fl~D~~VI~iP~~~~~~~~~L~~iI~~~R~~ksa~~  158 (265)
                      ..+..+...  +++.+.+++|+||||+|||||++++||++||+|||+||+||++|+++|++|++|+++|+++|++|++++
T Consensus        71 ~~~~~~~~~--~~~~~~~~~k~gVLLlNlGgPes~~dV~pFL~nlfsD~~II~lP~~~~~~~~~La~~Ia~~R~~ks~~~  148 (485)
T PLN02449         71 DSPDDDEAV--ADHPKVSEEKVGVLLLNLGGPETLDDVQPFLYNLFADPDIIRLPRLFRFLQKPLAQFISNLRAPKSKEG  148 (485)
T ss_pred             ccccccccc--cccccccCCceEEEEEeCCCCCChhHHHHHHHHhcCCCCeeeCchhhhHHHHHHHHHHhccCcHHHHHH
Confidence            334444444  666788888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCCCchHHHHHHHHHHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHH
Q 024624          159 YAAIGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRV  238 (265)
Q Consensus       159 Y~~IGggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVvLPLyPQYS~sTtgS~~~~  238 (265)
                      |+.|||+|||+.+|++|+++|+++|++.+.+++|++|||||+|||+|+|++|+++|+++||+||||||||.+||||+++.
T Consensus       149 Y~~IGGgSPL~~iT~~Qa~~Lq~~L~~~~~~~~V~~aMRY~~P~iedal~~l~~~G~~~iVvLPLYPQyS~sTtgSs~~~  228 (485)
T PLN02449        149 YASIGGGSPLRKITDEQAEALAKALEAKNLPAKVYVGMRYWHPFTEEAIDQIKADGITKLVVLPLYPQFSISTSGSSLRL  228 (485)
T ss_pred             HHHCCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEhhhcCCCCHHHHHHHHHhcCCCeEEEEECCcccccccHHHHHHH
Confidence            99999999999999999999999998777789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCC--CcceEEeeccc
Q 024624          239 LQNIFRYCCV--SVNWKFLASSN  259 (265)
Q Consensus       239 l~~~l~~~~~--~~~lrfI~s~~  259 (265)
                      +++++.+..+  .+.+++|++|-
T Consensus       229 l~~~~~~~~~~~~~~~~~I~~~~  251 (485)
T PLN02449        229 LESIFREDEYLVNMQHTVIPSWY  251 (485)
T ss_pred             HHHHHhhcccccCCeeEEecccc
Confidence            9999888765  45788888763

>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway Back     alignment and domain information
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism] Back     alignment and domain information
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc Back     alignment and domain information
>TIGR00109 hemH ferrochelatase Back     alignment and domain information
>KOG1321 consensus Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism] Back     alignment and domain information
>PRK00035 hemH ferrochelatase; Reviewed Back     alignment and domain information
>PRK12435 ferrochelatase; Provisional Back     alignment and domain information
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings Back     alignment and domain information
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed Back     alignment and domain information
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain Back     alignment and domain information
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain Back     alignment and domain information
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain Back     alignment and domain information
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain Back     alignment and domain information
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain Back     alignment and domain information
>PLN02757 sirohydrochlorine ferrochelatase Back     alignment and domain information
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway Back     alignment and domain information
>PF01903 CbiX: CbiX; InterPro: IPR002762 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt Back     alignment and domain information
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated Back     alignment and domain information
>COG2138 Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK02395 hypothetical protein; Provisional Back     alignment and domain information
>PLN02449 ferrochelatase Back     alignment and domain information
>TIGR00109 hemH ferrochelatase Back     alignment and domain information
>PRK00035 hemH ferrochelatase; Reviewed Back     alignment and domain information
>PRK02395 hypothetical protein; Provisional Back     alignment and domain information
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ] Back     alignment and domain information
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc Back     alignment and domain information
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ] Back     alignment and domain information
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism] Back     alignment and domain information
>PRK12435 ferrochelatase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query265
2po7_A 359 Crystal Structure Of Human Ferrochelatase Mutant Wi 7e-28
4f4d_A 359 F337r Variant Of Human Ferrochelatase Length = 359 2e-23
2qd3_A 359 Wild Type Human Ferrochelatase Crystallized With Am 2e-23
2hre_A 359 Structure Of Human Ferrochelatase Variant E343k Wit 2e-23
2qd2_A 359 F110a Variant Of Human Ferrochelatase With Protohem 4e-23
2po5_A 359 Crystal Structure Of Human Ferrochelatase Mutant Wi 2e-22
2pnj_A 359 Crystal Structure Of Human Ferrochelatase Mutant Wi 2e-22
3aqi_A 359 H240a Variant Of Human Ferrochelatase Length = 359 2e-22
1hrk_A 359 Crystal Structure Of Human Ferrochelatase Length = 2e-22
1l8x_A 362 Crystal Structure Of Ferrochelatase From The Yeast, 2e-22
3goq_A 310 Crystal Structure Of The Tyr13met Variant Of Bacill 8e-10
2ac2_A 309 Crystal Structure Of The Tyr13phe Mutant Variant Of 2e-09
1c1h_A 310 Crystal Structure Of Bacillus Subtilis Ferrochelata 2e-09
2ac4_A 309 Crystal Structure Of The His183cys Mutant Variant O 2e-09
1doz_A 309 Crystal Structure Of Ferrochelatase Length = 309 2e-09
2h1w_A 310 Crystal Structure Of The His183ala Mutant Variant O 2e-09
1c9e_A 306 Structure Of Ferrochelatase With Copper(Ii) N- Meth 2e-09
2q3j_A 309 Crystal Structure Of The His183ala Variant Of Bacil 2e-09
2h1v_A 310 Crystal Structure Of The Lys87ala Mutant Variant Of 6e-09
2c8j_A 311 Crystal Structure Of Ferrochelatase Hemh-1 From Bac 4e-08
>pdb|2PO7|A Chain A, Crystal Structure Of Human Ferrochelatase Mutant With His 341 Replaced By Cys Length = 359 Back     alignment and structure 
Iteration: 1

 Score =  120 bits (301), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 64/150 (42%), Positives = 90/150 (60%), Gaps = 11/150 (7%)
Query: 99  KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
           K G+L+LN+GGP+TL DV  FL  LF D D++ LP     +Q  LA  I+    PK +E 
Sbjct: 4   KTGILMLNMGGPETLGDVHDFLLRLFLDQDLMTLP-----IQNKLAPFIAKRLTPKIQEQ 58
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA---KNLPVNVYVGMRYWYPFTEEAVQQIKRDRI 215
           Y  IGGGSP++  T +Q + +   L+       P   Y+G RY +P TEEA+++++RD +
Sbjct: 59  YRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGL 118
Query: 216 TRLVVLPLYPQFSISTTGSSIRVLQNIFRY 245
            R +    YPQ+S STTGSS   L  I+RY
Sbjct: 119 ERAIAFTQYPQYSCSTTGSS---LNAIYRY 145
>pdb|4F4D|A Chain A, F337r Variant Of Human Ferrochelatase Length = 359 Back     alignment and structure
>pdb|2QD3|A Chain A, Wild Type Human Ferrochelatase Crystallized With Ammonium Sulfate Length = 359 Back     alignment and structure
>pdb|2HRE|A Chain A, Structure Of Human Ferrochelatase Variant E343k With Protoporphyrin Ix Bound Length = 359 Back     alignment and structure
>pdb|2QD2|A Chain A, F110a Variant Of Human Ferrochelatase With Protoheme Bound Length = 359 Back     alignment and structure
>pdb|2PO5|A Chain A, Crystal Structure Of Human Ferrochelatase Mutant With His 263 Replaced By Cys Length = 359 Back     alignment and structure
>pdb|2PNJ|A Chain A, Crystal Structure Of Human Ferrochelatase Mutant With Phe 337 Replaced By Ala Length = 359 Back     alignment and structure
>pdb|3AQI|A Chain A, H240a Variant Of Human Ferrochelatase Length = 359 Back     alignment and structure
>pdb|1HRK|A Chain A, Crystal Structure Of Human Ferrochelatase Length = 359 Back     alignment and structure
>pdb|1L8X|A Chain A, Crystal Structure Of Ferrochelatase From The Yeast, Saccharomyces Cerevisiae, With Cobalt(Ii) As The Substrate Ion Length = 362 Back     alignment and structure
>pdb|3GOQ|A Chain A, Crystal Structure Of The Tyr13met Variant Of Bacillus Subtilis Ferrochelatase Length = 310 Back     alignment and structure
>pdb|2AC2|A Chain A, Crystal Structure Of The Tyr13phe Mutant Variant Of Bacillus Subtilis Ferrochelatase With Zn(2+) Bound At The Active Site Length = 309 Back     alignment and structure
>pdb|1C1H|A Chain A, Crystal Structure Of Bacillus Subtilis Ferrochelatase In Complex With N-Methyl Mesoporphyrin Length = 310 Back     alignment and structure
>pdb|2AC4|A Chain A, Crystal Structure Of The His183cys Mutant Variant Of Bacillus Subtilis Ferrochelatase Length = 309 Back     alignment and structure
>pdb|1DOZ|A Chain A, Crystal Structure Of Ferrochelatase Length = 309 Back     alignment and structure
>pdb|2H1W|A Chain A, Crystal Structure Of The His183ala Mutant Variant Of Bacillus Subtilis Ferrochelatase Length = 310 Back     alignment and structure
>pdb|1C9E|A Chain A, Structure Of Ferrochelatase With Copper(Ii) N- Methylmesoporphyrin Complex Bound At The Active Site Length = 306 Back     alignment and structure
>pdb|2Q3J|A Chain A, Crystal Structure Of The His183ala Variant Of Bacillus Subtilis Ferrochelatase In Complex With N-Methyl Mesoporphyrin Length = 309 Back     alignment and structure
>pdb|2H1V|A Chain A, Crystal Structure Of The Lys87ala Mutant Variant Of Bacillus Subtilis Ferrochelatase Length = 310 Back     alignment and structure
>pdb|2C8J|A Chain A, Crystal Structure Of Ferrochelatase Hemh-1 From Bacillus Anthracis, Str. Ames Length = 311 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query265
1lbq_A 362 Ferrochelatase; rossmann fold, PI-helix, lyase; 2. 8e-75
3hcn_A 359 Ferrochelatase, mitochondrial; metal selectivity, 7e-72
2h1v_A 310 Ferrochelatase; rossman fold, PI-helix, lyase; 1.2 5e-59
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A {Saccharomyces cerevisiae} SCOP: c.92.1.1 PDB: 1l8x_A Length = 362 Back     alignment and structure
 Score =  230 bits (590), Expect = 8e-75
 Identities = 56/149 (37%), Positives = 81/149 (54%), Gaps = 6/149 (4%)

Query: 99  KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
             G++L+N+GGP  + +   FL+ LFAD D+I +   +   Q  +AK I+  R PK ++ 
Sbjct: 7   PTGIVLMNMGGPSKVEETYDFLYQLFADNDLIPISAKY---QKTIAKYIAKFRTPKIEKQ 63

Query: 159 YAAIGGGSPLRKITDEQAQALKTALEAK---NLPVNVYVGMRYWYPFTEEAVQQIKRDRI 215
           Y  IGGGSP+RK ++ QA  +   L+       P   YV  RY  P T E  +Q+ +D +
Sbjct: 64  YREIGGGSPIRKWSEYQATEVCKILDKTCPETAPHKPYVAFRYAKPLTAETYKQMLKDGV 123

Query: 216 TRLVVLPLYPQFSISTTGSSIRVLQNIFR 244
            + V    YP FS STTGSSI  L    +
Sbjct: 124 KKAVAFSQYPHFSYSTTGSSINELWRQIK 152
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, disease mutation, heme biosynthesis, iron, iron-sulfur, lyase, membrane, metal-BIN mitochondrion; HET: CHD HEM GOL; 1.60A {Homo sapiens} PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A* 2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 3aqi_A* 2pnj_A* 2po5_A* 2po7_A* Length = 359 Back     alignment and structure
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A 3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A* 1c9e_A* 2c8j_A Length = 310 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query265
3hcn_A 359 Ferrochelatase, mitochondrial; metal selectivity, 100.0
1lbq_A 362 Ferrochelatase; rossmann fold, PI-helix, lyase; 2. 100.0
2h1v_A 310 Ferrochelatase; rossman fold, PI-helix, lyase; 1.2 100.0
2xvy_A 269 Chelatase, putative; metal binding protein; HET: H 98.77
2xwp_A 264 Sirohydrochlorin cobaltochelatase; lyase, beta-alp 98.34
3lyh_A126 Cobalamin (vitamin B12) biosynthesis CBIX protein; 98.26
2xws_A133 Sirohydrochlorin cobaltochelatase; lyase, beta-alp 98.22
1tjn_A156 Sirohydrochlorin cobaltochelatase; AF0721, APC5049 98.19
2jh3_A 474 Ribosomal protein S2-related protein; CBIX, SAD ph 98.16
2xwp_A264 Sirohydrochlorin cobaltochelatase; lyase, beta-alp 97.18
2xvy_A269 Chelatase, putative; metal binding protein; HET: H 96.42
2h1v_A310 Ferrochelatase; rossman fold, PI-helix, lyase; 1.2 95.5
3hcn_A359 Ferrochelatase, mitochondrial; metal selectivity, 94.47
1lbq_A362 Ferrochelatase; rossmann fold, PI-helix, lyase; 2. 92.88
2jh3_A 474 Ribosomal protein S2-related protein; CBIX, SAD ph 84.85
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, disease mutation, heme biosynthesis, iron, iron-sulfur, lyase, membrane, metal-BIN mitochondrion; HET: CHD HEM GOL; 1.60A {Homo sapiens} SCOP: c.92.1.1 PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A* 2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 4f4d_A* 3aqi_A* 2pnj_A* 2po5_A* 2po7_A* Back     alignment and structure
Probab=100.00  E-value=5.5e-45  Score=344.52  Aligned_cols=158  Identities=39%  Similarity=0.703  Sum_probs=146.9

Q ss_pred             CCceEEEEEccCCCCCcCcHHHHHHHhcCCCCcccCchhhhhhhhHHHHHHHhccchhhHhhhhhcCCCCchHHHHHHHH
Q 024624           97 EDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQA  176 (265)
Q Consensus        97 ~~K~aVLLvNlG~P~s~~dV~~FL~~fl~D~~VI~iP~~~~~~~~~L~~iI~~~R~~ksa~~Y~~IGggSPL~~~T~~Qa  176 (265)
                      ++|+||||||||||++++||++||+|||+|++||++|.     +++|+++|+++|++|++++|+.|||||||+.+|++|+
T Consensus         2 ~~k~gVLL~nlG~P~~~~~V~~fL~~~~~d~~Vi~~P~-----~~~L~~~I~~~R~~k~~~~Y~~igggSPL~~~t~~Q~   76 (359)
T 3hcn_A            2 KPKTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLPI-----QNKLAPFIAKRRTPKIQEQYRRIGGGSPIKIWTSKQG   76 (359)
T ss_dssp             CCCEEEEEEECCCCSSGGGHHHHHHHHHTCTTTCCCTT-----HHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHHH
T ss_pred             CCceEEEEEeCCCCCCHHHHHHHHHHHccCCcccccch-----HHHHhHHhcccchHHHHHHHHHcCCCCcHHHHHHHHH
Confidence            56899999999999999999999999999999999983     4689999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCC---CCceEEEeEecCCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHHHHHHHhcCCCc--c
Q 024624          177 QALKTALEAKN---LPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRYCCVSV--N  251 (265)
Q Consensus       177 ~~L~~~L~~~g---~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~~~~~~~--~  251 (265)
                      ++|++.|++.+   .+++|++|||||+|+|+|+|++|+++|+++||+||||||||.+|||++++.+.+.+.+.++.+  .
T Consensus        77 ~~L~~~L~~~~~~~~~~~V~~amry~~P~i~~~l~~l~~~G~~~ivvlPlyPqyS~~Ttgs~~~~~~~~~~~~~~~~~~~  156 (359)
T 3hcn_A           77 EGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMK  156 (359)
T ss_dssp             HHHHHHHHHHCGGGCSEEEEEEESSSSSBHHHHHHHHHHTTCSEEEEEESCSSCCTTTHHHHHHHHHHHHHHTTCCCSSE
T ss_pred             HHHHHHHhhhcccccCceEEEEEeeCCCCHHHHHHHHHhcCCCeEEEEECCccccccchhhHHHHHHHHHHHhccCCCCc
Confidence            99999998654   468999999999999999999999999999999999999999999999999999998876644  6


Q ss_pred             eEEeeccc
Q 024624          252 WKFLASSN  259 (265)
Q Consensus       252 lrfI~s~~  259 (265)
                      +++|++|-
T Consensus       157 ~~~i~~~~  164 (359)
T 3hcn_A          157 WSTIDRWP  164 (359)
T ss_dssp             EEEECCCT
T ss_pred             eEEeCCcc
Confidence            88988763
>1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A {Saccharomyces cerevisiae} SCOP: c.92.1.1 PDB: 1l8x_A Back     alignment and structure
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A 3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A* 1c9e_A* 2c8j_A Back     alignment and structure
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A* Back     alignment and structure
>2xwp_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; HET: SIR; 1.90A {Salmonella enterica} PDB: 1qgo_A* Back     alignment and structure
>3lyh_A Cobalamin (vitamin B12) biosynthesis CBIX protein; structural genomics, joint center for structural genomics, protein structure initiative; HET: MSE; 1.60A {Marinobacter aquaeolei} Back     alignment and structure
>2xws_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; 1.60A {Archaeoglobus fulgidus} PDB: 2dj5_A* 2xwq_A Back     alignment and structure
>1tjn_A Sirohydrochlorin cobaltochelatase; AF0721, APC5049, midwest consortium for structural genomics, structure initiative, A. fulgidus; 2.01A {Archaeoglobus fulgidus} SCOP: c.92.1.3 Back     alignment and structure
>2jh3_A Ribosomal protein S2-related protein; CBIX, SAD phasing, structural genomics, chelatase super-family fold, 4Fe-4S iron-sulphur cluster; 1.9A {Deinococcus radiodurans} Back     alignment and structure
>2xwp_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; HET: SIR; 1.90A {Salmonella enterica} PDB: 1qgo_A* Back     alignment and structure
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A* Back     alignment and structure
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A 3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A* 1c9e_A* 2c8j_A Back     alignment and structure
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, disease mutation, heme biosynthesis, iron, iron-sulfur, lyase, membrane, metal-BIN mitochondrion; HET: CHD HEM GOL; 1.60A {Homo sapiens} SCOP: c.92.1.1 PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A* 2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 4f4d_A* 3aqi_A* 2pnj_A* 2po5_A* 2po7_A* Back     alignment and structure
>1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A {Saccharomyces cerevisiae} SCOP: c.92.1.1 PDB: 1l8x_A Back     alignment and structure
>2jh3_A Ribosomal protein S2-related protein; CBIX, SAD phasing, structural genomics, chelatase super-family fold, 4Fe-4S iron-sulphur cluster; 1.9A {Deinococcus radiodurans} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 265
d1lbqa_ 356 c.92.1.1 (A:) Ferrochelatase {Baker's yeast (Sacch 3e-42
d2hrca1 359 c.92.1.1 (A:65-423) Ferrochelatase {Human (Homo sa 9e-36
d2hk6a1 309 c.92.1.1 (A:2-310) Ferrochelatase {Bacillus subtil 3e-33
>d1lbqa_ c.92.1.1 (A:) Ferrochelatase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 356 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Chelatase-like
superfamily: Chelatase
family: Ferrochelatase
domain: Ferrochelatase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  145 bits (367), Expect = 3e-42
 Identities = 56/159 (35%), Positives = 84/159 (52%), Gaps = 6/159 (3%)

Query: 99  KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
             G++L+N+GGP  + +   FL+ LFAD D+I +   +   Q  +AK I+  R PK ++ 
Sbjct: 3   PTGIVLMNMGGPSKVEETYDFLYQLFADNDLIPISAKY---QKTIAKYIAKFRTPKIEKQ 59

Query: 159 YAAIGGGSPLRKITDEQAQALKTALE---AKNLPVNVYVGMRYWYPFTEEAVQQIKRDRI 215
           Y  IGGGSP+RK ++ QA  +   L+    +  P   YV  RY  P T E  +Q+ +D +
Sbjct: 60  YREIGGGSPIRKWSEYQATEVCKILDKTCPETAPHKPYVAFRYAKPLTAETYKQMLKDGV 119

Query: 216 TRLVVLPLYPQFSISTTGSSIRVLQNIFRYCCVSVNWKF 254
            + V    YP FS STTGSSI  L    +      +  +
Sbjct: 120 KKAVAFSQYPHFSYSTTGSSINELWRQIKALDSERSISW 158
>d2hrca1 c.92.1.1 (A:65-423) Ferrochelatase {Human (Homo sapiens) [TaxId: 9606]} Length = 359 Back     information, alignment and structure
>d2hk6a1 c.92.1.1 (A:2-310) Ferrochelatase {Bacillus subtilis [TaxId: 1423]} Length = 309 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query265
d1lbqa_ 356 Ferrochelatase {Baker's yeast (Saccharomyces cerev 100.0
d2hrca1 359 Ferrochelatase {Human (Homo sapiens) [TaxId: 9606] 100.0
d2hk6a1 309 Ferrochelatase {Bacillus subtilis [TaxId: 1423]} 100.0
d1qgoa_ 257 Cobalt chelatase CbiK {Salmonella typhimurium [Tax 98.17
d1qgoa_257 Cobalt chelatase CbiK {Salmonella typhimurium [Tax 96.5
d1tjna_125 Sirohydrochlorin cobaltochelatase CbiX {Archaeon A 96.21
d2hrca1359 Ferrochelatase {Human (Homo sapiens) [TaxId: 9606] 92.31
d1vmea1148 ROO-like flavoprotein TM0755, C-terminal domain {T 81.67
>d1lbqa_ c.92.1.1 (A:) Ferrochelatase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Chelatase-like
superfamily: Chelatase
family: Ferrochelatase
domain: Ferrochelatase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.8e-46  Score=346.95  Aligned_cols=159  Identities=36%  Similarity=0.637  Sum_probs=146.6

Q ss_pred             CCceEEEEEccCCCCCcCcHHHHHHHhcCCCCcccCchhhhhhhhHHHHHHHhccchhhHhhhhhcCCCCchHHHHHHHH
Q 024624           97 EDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQA  176 (265)
Q Consensus        97 ~~K~aVLLvNlG~P~s~~dV~~FL~~fl~D~~VI~iP~~~~~~~~~L~~iI~~~R~~ksa~~Y~~IGggSPL~~~T~~Qa  176 (265)
                      +.|+||||||||||++++||++||++||+||+||++|+++|   ++|+.+|+++|++|++++|++|||||||+.+|++|+
T Consensus         1 k~~tgVLL~nlGtP~s~~~V~~yL~~fl~D~~vi~~p~~~~---~~l~~~I~~~R~~k~a~~Y~~IgggSPL~~~t~~qa   77 (356)
T d1lbqa_           1 RSPTGIVLMNMGGPSKVEETYDFLYQLFADNDLIPISAKYQ---KTIAKYIAKFRTPKIEKQYREIGGGSPIRKWSEYQA   77 (356)
T ss_dssp             CCCEEEEEEECCCCSSGGGHHHHHHHHTTCCSSSCCCSSSH---HHHHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHH
T ss_pred             CCceEEEEEECCCCCChHHHHHHHHHHcCCCccccCCHHHH---HHHhhhcCccCCHHHHHHHHHcCCCChhHHHHHHHH
Confidence            46899999999999999999999999999999999998654   478889999999999999999999999999999999


Q ss_pred             HHHHHHHHhCC---CCceEEEeEecCCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHHHHHHHhcCC--Ccc
Q 024624          177 QALKTALEAKN---LPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRYCCV--SVN  251 (265)
Q Consensus       177 ~~L~~~L~~~g---~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~~~~~--~~~  251 (265)
                      ++|++.|++..   .++.|++|||||+|+|+++|++|+++|+++||+||||||||.+|||++++.+.+++++..+  ...
T Consensus        78 ~~l~~~L~~~~~~~~~~~V~~amry~~P~i~~~l~~l~~~G~~~ilvlPlyPqyS~sTt~s~~~~v~~~l~~~~~~~~~~  157 (356)
T d1lbqa_          78 TEVCKILDKTCPETAPHKPYVAFRYAKPLTAETYKQMLKDGVKKAVAFSQYPHFSYSTTGSSINELWRQIKALDSERSIS  157 (356)
T ss_dssp             HHHHHHHHHHCGGGCCEEEEEEESSSSSCHHHHHHHHHTTTCCEEEEEESCSSCCTTTHHHHHHHHHHHHHHHCTTCCSE
T ss_pred             HHHHHHhhccccccCCceeEEEeccccccHHHHHHHHHhCCCcceEEEecchhhhHHHHHHHHHHHHHHHHHhhhhcccc
Confidence            99999998653   4689999999999999999999999999999999999999999999999999999886544  456


Q ss_pred             eEEeecc
Q 024624          252 WKFLASS  258 (265)
Q Consensus       252 lrfI~s~  258 (265)
                      +++|+.|
T Consensus       158 ~~~I~~~  164 (356)
T d1lbqa_         158 WSVIDRW  164 (356)
T ss_dssp             EEEECCC
T ss_pred             ceeeccc
Confidence            7888765
>d2hrca1 c.92.1.1 (A:65-423) Ferrochelatase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hk6a1 c.92.1.1 (A:2-310) Ferrochelatase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1qgoa_ c.92.1.2 (A:) Cobalt chelatase CbiK {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1qgoa_ c.92.1.2 (A:) Cobalt chelatase CbiK {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1tjna_ c.92.1.3 (A:) Sirohydrochlorin cobaltochelatase CbiX {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2hrca1 c.92.1.1 (A:65-423) Ferrochelatase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure