Citrus Sinensis ID: 024632

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-----
Protein Sequence
MAGCTLILFFLLTCAGLPLCSSDPNDEACLTHLSQSLKDPYKNLQNWTKSTFSNACNGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYPLPPMKSKGLSVLAIVGIGLGSGFASLVISFTGVCIWLKVTEHKMALDQEGISM
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccccccccccccccccccccccccccccEEEcccccEEEEEccccccEEEccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEcccccccccccccccccccccccccccccccccccccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHcccccHHHcccHHHHHHHHHHccccccccccHcccccccEEEEccccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHcccccHHHccHcccccccccccccccccccccccEEEEccccccccccHHHHHHHHHEEEEEccccccccccccccc
Coil and Loop (DISEMBL)
MAGCTLILFFLLTcaglplcssdpndeacLTHLSQSLKDPYKNLQNWTKstfsnacngftsylpgatcnngriYKLSLTnlslqgsispylsnctnlqsldlssnaltgsipaDLQYLVNLAVLNLSanrlageippqltLCAYLNVIDLhdnlltgqipqqlGLLVRLsafdvsnnklsgpipaslgnrsgnlpkfnassfegnkdlygyplppmkskglSVLAIVGIGLGSGFASLVISFTGVCIWLKVTEHKMaldqegism
Flexible Loop (DISEMBL)
MAGCTLILFFLLTCAGLPLCSSDPNDEACLTHLSQSLKDPYKNLQNWTKSTFSNACNGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSgpipaslgnrsgNLPKFNASSFEGNKDLYGYPLPPMKSKGLSVLAIVGIGLGSGFASLVISFTGVCIWLKVTEHkmaldqegism
Low Complexity Region (SEG)
MAGCTLILFFLLTCAGLPLCSSDPNDEACLTHLSQSLKDPYKNLQNWTKSTFSNACNGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYlvnlavlnlsanrlaGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYPLPPMKSKGLSVLAIVGIGLGSGFASLVISFTGVCIWLKVTEHKMALDQEGISM
Disordered region (IsUnstruct)
**GCTLILFFLLTCAGLPLCSSDPNDEACLTHLSQSLKDPYKNLQNWTKSTFSNACNGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVS*******************************DLYGYPLPPMKSKGLSVLAIVGIGLGSGFASLVISFTGVCIWLKVTEHK**********
Disordered Region (DISOPRED)
*AGCTLILFFLLTCAGLPLCSSDPNDEACLTHLSQSLKDPYKNLQNWTKSTFSNACNGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLY**************LAIVGIGLGSGFASLVISFTGVCIW*****************
Disordered Region (DISEMBL)
MAGCTLILFFLLTCAGLPLCSSDPNDEACLTHLSQSLKDPYKNLQNWTKSTFSNACNGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYPLPPMKSKGLSVLAIVGIGLGSGFASLVISFTGVCIWLKVTEHKMALDQEGISM
Disordered Region (DISPRO)
MAGCTLILFFLLTCAGLPLCSSDPNDEACLTHLSQSLKDPYKNLQNWTKSTFSNACNGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYPLPPMKSKGLSVLAIVGIGLGSGFASLVISFTGVCIWLKVTEHK**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGCTLILFFLLTCAGLPLCSSDPNDEACLTHLSQSLKDPYKNLQNWTKSTFSNACNGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYPLPPMKSKGLSVLAIVGIGLGSGFASLVISFTGVCIWLKVTEHKMALDQEGISM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	265	2.2.26 [Sep-21-2011]
C0LGI5	591	Probable LRR receptor-lik	no	no	0.890	0.399	0.351	6e-27
O04567	601	Probable inactive recepto	no	no	0.807	0.356	0.373	9e-26
Q9ASS4	620	Probably inactive leucine	no	no	0.8	0.341	0.346	4e-24
Q94AG2	625	Somatic embryogenesis rec	no	no	0.724	0.307	0.371	4e-20
Q9XIC7	628	Somatic embryogenesis rec	no	no	0.645	0.272	0.382	1e-19
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.596	0.126	0.4	4e-19
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.584	0.136	0.376	9e-19
Q8RY65	635	Protein NSP-INTERACTING K	no	no	0.841	0.351	0.293	1e-18
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.592	0.125	0.364	1e-18
C0LGX3	993	LRR receptor-like serine/	no	no	0.686	0.183	0.343	2e-18

>sp|C0LGI5|Y1699_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g69990 OS=Arabidopsis thaliana GN=At1g69990 PE=2 SV=1

 Score =  121 bits (303), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 90/256 (35%), Positives = 128/256 (50%), Gaps = 20/256 (7%)

Query: 5   TLILFFLLTCAGLPLCSSDPNDEACLTHLSQSLKDPYKNLQNWTKSTFSNACNGFTSYLP 64
           T+ +FF++    L   S   +D  CL     SLKDP   L  W+   F N+ +     L 
Sbjct: 3   TISIFFVII---LMSSSHAEDDVLCLKGFKSSLKDPSNQLNTWS---FPNSSSSICK-LT 55

Query: 65  GATCNNG---RIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADL-QYLVN 120
           G +C N    RI  L L ++ L G I   L  C +LQSLDLS N  +G IP+ +  +L  
Sbjct: 56  GVSCWNAKENRILSLQLQSMQLSGQIPESLKLCRSLQSLDLSFNDFSGLIPSQICSWLPY 115

Query: 121 LAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
           L  L+LS N+L+G IP Q+  C +LN + L+ N LTG IP +L  L RL    +++N LS
Sbjct: 116 LVTLDLSGNKLSGSIPSQIVDCKFLNSLALNQNKLTGSIPSELTRLNRLQRLSLADNDLS 175

Query: 181 GPIPASLGNRSGNLPKFNASSFEGNKDLYGYPLPPMKS-KGLSVLAIVGIGLGSGFASLV 239
           G IP+ L +       +    F GN  L G PL    S  G ++  IV  G+     SL 
Sbjct: 176 GSIPSELSH-------YGEDGFRGNGGLCGKPLSNCGSFNGKNLTIIVTAGVIGAVGSLC 228

Query: 240 ISFTGVCIWLKVTEHK 255
           + F G+  W  + + +
Sbjct: 229 VGF-GMFWWFFIRDRR 243

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|O04567|Y1719_ARATH Probable inactive receptor kinase At1g27190 OS=Arabidopsis thaliana GN=At1g27190 PE=1 SV=1

 Score =  117 bits (293), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 89/238 (37%), Positives = 120/238 (50%), Gaps = 24/238 (10%)

Query: 25  NDEACLTHLSQSLKDPYKNLQNWTKSTFSNACNGFTSYLPGATCNN---GRIYKLSLTNL 81
           +D  CL  L  SL DP   L +W+   F N+       L G +C N    RI  L L ++
Sbjct: 26  DDVLCLQGLKNSLIDPSSRLSSWS---FPNSSASSICKLTGVSCWNEKENRIISLQLQSM 82

Query: 82  SLQGSISPYLSNCTNLQSLDLSSNALTGSIPADL-QYLVNLAVLNLSANRLAGEIPPQLT 140
            L G I   L  C +LQSLDLS N L+GSIP+ +  +L  L  L+LS N+L G IP Q+ 
Sbjct: 83  QLAGEIPESLKLCRSLQSLDLSGNDLSGSIPSQICSWLPYLVTLDLSGNKLGGSIPTQIV 142

Query: 141 LCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNAS 200
            C +LN + L DN L+G IP QL  L RL    ++ N LSG IP+ L        +F   
Sbjct: 143 ECKFLNALILSDNKLSGSIPSQLSRLDRLRRLSLAGNDLSGTIPSELA-------RFGGD 195

Query: 201 SFEGNKDLYGYPLP---PMKSKGLSVLAIVGI--GLGSGFASLVISFTGVCIWLKVTE 253
            F GN  L G PL     +  + LS++ + G+   +GS    LVI +     W  + E
Sbjct: 196 DFSGNNGLCGKPLSRCGALNGRNLSIIIVAGVLGAVGSLCVGLVIFW-----WFFIRE 248

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ASS4|Y5838_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 OS=Arabidopsis thaliana GN=At5g48380 PE=1 SV=1

 Score =  111 bits (278), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 113/228 (49%), Gaps = 16/228 (7%)

Query: 20  CSSDPNDEACLTHLSQSLKDPYKNLQNWTKSTFSNACNGFTSYLPGATC---NNGRIYKL 76
             +D  +  CL      ++DP + L  W    F N   G+     G TC   +  R+  +
Sbjct: 25  VDADQANIDCLRTFKSQVEDPNRYLSTWV---FGNETAGYICKFSGVTCWHDDENRVLSI 81

Query: 77  SLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLA-VLNLSANRLAGEI 135
            L+   L+G   P +  C +L  LDLS N  +G +PA++  L+ L  +L+LS N  +GEI
Sbjct: 82  KLSGYGLRGVFPPAVKLCADLTGLDLSRNNFSGPLPANISTLIPLVTILDLSYNSFSGEI 141

Query: 136 PPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLP 195
           P  ++   +LN + L  N  TG +P QL  L RL  F VS+N+L GPIP    N +  L 
Sbjct: 142 PMLISNITFLNTLMLQHNQFTGTLPPQLAQLGRLKTFSVSDNRLVGPIP----NFNQTL- 196

Query: 196 KFNASSFEGNKDLYGYPLPPMKSKGLS---VLAIVGIGLGSGFASLVI 240
           +F    F  N DL G PL   KS   S   V+ I  +G G   A+LV+
Sbjct: 197 QFKQELFANNLDLCGKPLDDCKSASSSRGKVVIIAAVG-GLTAAALVV 243

Arabidopsis thaliana (taxid: 3702)

>sp|Q94AG2|SERK1_ARATH Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2

 Score = 98.6 bits (244), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/210 (37%), Positives = 106/210 (50%), Gaps = 18/210 (8%)

Query: 7   ILFFLLTCAGLP-----LCSSDPNDEACLTHLSQSLKDPYKNLQNWTKSTFSNACNGFTS 61
           ++F LL+   LP     L S++   +A  T L  +L DP   LQ+W   T  N C  F  
Sbjct: 6   VVFILLSLILLPNHSLWLASANLEGDALHT-LRVTLVDPNNVLQSW-DPTLVNPCTWFH- 62

Query: 62  YLPGATCNN-GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVN 120
                TCNN   + ++ L N  L G + P L    NLQ L+L SN +TG IP++L  L N
Sbjct: 63  ----VTCNNENSVIRVDLGNAELSGHLVPELGVLKNLQYLELYSNNITGPIPSNLGNLTN 118

Query: 121 LAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
           L  L+L  N  +G IP  L   + L  + L++N LTG IP  L  +  L   D+SNN+LS
Sbjct: 119 LVSLDLYLNSFSGPIPESLGKLSKLRFLRLNNNSLTGSIPMSLTNITTLQVLDLSNNRLS 178

Query: 181 GPIPASLGNRSGNLPKFNASSFEGNKDLYG 210
           G +P      +G+   F   SF  N DL G
Sbjct: 179 GSVPD-----NGSFSLFTPISFANNLDLCG 203

Dual specificity kinase acting on both serine/threonine-and tyrosine-containing substrates. Phosphorylates BRI1 on 'Ser-887' and CDC48 on at least one threonine residue and on 'Ser-41'. Confers embryogenic competence. Acts redundantly with SERK2 as a control point for sporophytic development controlling male gametophyte production. Involved in the brassinolide signaling pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9XIC7|SERK2_ARATH Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana GN=SERK2 PE=1 SV=1

 Score = 97.1 bits (240), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/183 (38%), Positives = 91/183 (49%), Gaps = 12/183 (6%)

Query: 29  CLTHLSQSLKDPYKNLQNWTKSTFSNACNGFTSYLPGATCNN-GRIYKLSLTNLSLQGSI 87
            L  L  +L DP   LQ+W   T  N C  F       TCNN   + ++ L N  L G +
Sbjct: 35  ALHSLRANLVDPNNVLQSW-DPTLVNPCTWFH-----VTCNNENSVIRVDLGNADLSGQL 88

Query: 88  SPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNV 147
            P L    NLQ L+L SN +TG +P+DL  L NL  L+L  N   G IP  L     L  
Sbjct: 89  VPQLGQLKNLQYLELYSNNITGPVPSDLGNLTNLVSLDLYLNSFTGPIPDSLGKLFKLRF 148

Query: 148 IDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD 207
           + L++N LTG IP  L  ++ L   D+SNN+LSG +P      +G+   F   SF  N D
Sbjct: 149 LRLNNNSLTGPIPMSLTNIMTLQVLDLSNNRLSGSVPD-----NGSFSLFTPISFANNLD 203

Query: 208 LYG 210
           L G
Sbjct: 204 LCG 206

Serine/threonine-kinase involved in brassinosteroid-dependent and -independent signaling pathways. Acts redundantly with SERK1 as a control point for sporophytic development controlling male gametophyte production.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score = 95.5 bits (236), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/170 (40%), Positives = 92/170 (54%), Gaps = 12/170 (7%)

Query: 25  NDEACLTHLSQSL-KDPYKN--LQNWTKSTFSNACNGFTSYLPGATCNNG---RIYKLSL 78
           ND   L  + +SL  +P ++  L+ W      N C+       G TC+N    R+  L+L
Sbjct: 25  NDLQTLLEVKKSLVTNPQEDDPLRQWNSDNI-NYCS-----WTGVTCDNTGLFRVIALNL 78

Query: 79  TNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQ 138
           T L L GSISP+     NL  LDLSSN L G IP  L  L +L  L L +N+L GEIP Q
Sbjct: 79  TGLGLTGSISPWFGRFDNLIHLDLSSNNLVGPIPTALSNLTSLESLFLFSNQLTGEIPSQ 138

Query: 139 LTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLG 188
           L     +  + + DN L G IP+ LG LV L    +++ +L+GPIP+ LG
Sbjct: 139 LGSLVNIRSLRIGDNELVGDIPETLGNLVNLQMLALASCRLTGPIPSQLG 188

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score = 94.4 bits (233), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 73/194 (37%), Positives = 94/194 (48%), Gaps = 39/194 (20%)

Query: 83  LQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTL- 141
           + GSI P + NC+ L+ L+L SN L G IPADL  L  L VL+L  N L+GEIPP+++  
Sbjct: 584 ISGSIPPEIGNCSALEVLELRSNRLMGHIPADLSRLPRLKVLDLGQNNLSGEIPPEISQS 643

Query: 142 -----------------------CAYLNVIDLHDNLLTGQIPQQLGLL-VRLSAFDVSNN 177
                                   + L  +DL  N LTG+IP  L L+   L  F+VS+N
Sbjct: 644 SSLNSLSLDHNHLSGVIPGSFSGLSNLTKMDLSVNNLTGEIPASLALISSNLVYFNVSSN 703

Query: 178 KLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYPL---------PPMKSKGLSVLAIVG 228
            L G IPASLG+R       N S F GN +L G PL            K K   +L IV 
Sbjct: 704 NLKGEIPASLGSRIN-----NTSEFSGNTELCGKPLNRRCESSTAEGKKKKRKMILMIVM 758

Query: 229 IGLGSGFASLVISF 242
             +G+   SL   F
Sbjct: 759 AAIGAFLLSLFCCF 772

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8RY65|NIK2_ARATH Protein NSP-INTERACTING KINASE 2 OS=Arabidopsis thaliana GN=NIK2 PE=1 SV=1

 Score = 94.0 bits (232), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 115/245 (46%), Gaps = 22/245 (8%)

Query: 28  ACLTHLSQSLKDPYKNLQNWTKSTFSNACNGFTSYLPGATCNNGRIYKLSLTNLSLQGSI 87
             L  +  SL DP+  L NW   T  + C+         TC++G + +L   + +L G++
Sbjct: 44  VALIGIKSSLTDPHGVLMNW-DDTAVDPCS-----WNMITCSDGFVIRLEAPSQNLSGTL 97

Query: 88  SPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNV 147
           S  + N TNLQ++ L +N +TG+IP ++  L+ L  L+LS N   G+IP  L+    L  
Sbjct: 98  SSSIGNLTNLQTVLLQNNYITGNIPHEIGKLMKLKTLDLSTNNFTGQIPFTLSYSKNLQY 157

Query: 148 IDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD 207
           + +++N LTG IP  L  + +L+  D+S N LSGP+P SL      +           KD
Sbjct: 158 LRVNNNSLTGTIPSSLANMTQLTFLDLSYNNLSGPVPRSLAKTFNVMGNSQICPTGTEKD 217

Query: 208 LYGYPLPPMK--------------SKGLSVLAIVGIGLGSGFASLVISFTGVCIWLKVTE 253
             G    PM               +K   +  + G+ L +    L+I F G  +W +   
Sbjct: 218 CNGTQPKPMSITLNSSQNKSSDGGTKNRKIAVVFGVSL-TCVCLLIIGF-GFLLWWRRRH 275

Query: 254 HKMAL 258
           +K  L
Sbjct: 276 NKQVL 280

Involved in defense response to geminivirus infection (By similarity). Phosphorylates RPL10A in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score = 93.6 bits (231), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/159 (36%), Positives = 84/159 (52%), Gaps = 2/159 (1%)

Query: 31  THLSQSLKDPYKNLQNWTKSTFSNACNGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPY 90
           T LS  +     N Q+      SN  N  T  +P +      +  L L N SL+G++S  
Sbjct: 347 TQLSGEIPAEISNCQSLKLLDLSN--NTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSS 404

Query: 91  LSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL 150
           +SN TNLQ   L  N L G +P ++ +L  L ++ L  NR +GE+P ++  C  L  ID 
Sbjct: 405 ISNLTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDW 464

Query: 151 HDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGN 189
           + N L+G+IP  +G L  L+   +  N+L G IPASLGN
Sbjct: 465 YGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIPASLGN 503

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGX3|HSL2_ARATH LRR receptor-like serine/threonine-protein kinase HSL2 OS=Arabidopsis thaliana GN=HSL2 PE=2 SV=1

 Score = 93.2 bits (230), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 102/198 (51%), Gaps = 16/198 (8%)

Query: 55  ACNGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPAD 114
           + N F+  +P   C+   +  + L+  S  GSI   ++   NL+ +++  N L G IP+ 
Sbjct: 467 SANNFSGVIPVKLCDLRDLRVIDLSRNSFLGSIPSCINKLKNLERVEMQENMLDGEIPSS 526

Query: 115 LQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDV 174
           +     L  LNLS NRL G IPP+L     LN +DL +N LTG+IP +L L ++L+ F+V
Sbjct: 527 VSSCTELTELNLSNNRLRGGIPPELGDLPVLNYLDLSNNQLTGEIPAEL-LRLKLNQFNV 585

Query: 175 SNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYG---YPLPPMKSKGLSVLAIVGIGL 231
           S+NKL G IP      SG        SF GN +L      P+ P +SK      I+ I +
Sbjct: 586 SDNKLYGKIP------SGFQQDIFRPSFLGNPNLCAPNLDPIRPCRSKR-ETRYILPISI 638

Query: 232 GSGFASLVISFTGVCIWL 249
                  +++ TG  +WL
Sbjct: 639 -----LCIVALTGALVWL 651

Receptor-like serine/threonine-kinase acting on substrates that controls floral organ abscission. Regulated by the 'INFLORESCENCE DEFICIENT IN ABSCISSION' (IDA) family of ligands.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
224097218	268	predicted protein [Populus trichocarpa]	0.988	0.977	0.829	1e-121
224127208	268	predicted protein [Populus trichocarpa]	0.969	0.958	0.841	1e-120
255579539	269	serine-threonine protein kinase, plant-t	0.928	0.914	0.853	1e-117
225438213	270	PREDICTED: LRR receptor-like serine/thre	0.977	0.959	0.803	1e-115
449451321	271	PREDICTED: receptor-like protein kinase	0.996	0.974	0.758	1e-112
296090644	283	unnamed protein product [Vitis vinifera]	0.909	0.851	0.829	1e-112
357482503	272	Receptor-like protein kinase [Medicago t	0.992	0.966	0.727	1e-105
356497017	268	PREDICTED: LRR receptor-like serine/thre	0.935	0.925	0.762	1e-105
15229606	274	receptor like protein 44 [Arabidopsis th	0.928	0.897	0.762	1e-104
297819628	278	leucine-rich repeat family protein [Arab	0.928	0.884	0.754	1e-103

>gi|224097218|ref|XP_002310881.1| predicted protein [Populus trichocarpa] gi|222853784|gb|EEE91331.1| predicted protein [Populus trichocarpa]

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 219/264 (82%), Positives = 239/264 (90%), Gaps = 2/264 (0%)

Query: 1   MAGCTLILFFLLTCAGLPLCSSDPNDEACLTHLSQSLKDPYKNLQNWTKSTFSNACNGFT 60
           M   +++LF LLTCA + +  SDP+DEACLTH +QSLKDP K+LQNWTKS F+N C GFT
Sbjct: 1   MGFWSVVLFTLLTCASVSI--SDPSDEACLTHFTQSLKDPTKSLQNWTKSNFANPCYGFT 58

Query: 61  SYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVN 120
           SYLPGATCNNGRIYKLSLTNLSLQGSISPYL+NCTNLQSLDLSSN +TG IPADLQ LVN
Sbjct: 59  SYLPGATCNNGRIYKLSLTNLSLQGSISPYLANCTNLQSLDLSSNQITGPIPADLQSLVN 118

Query: 121 LAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
           LAVLNLS+NRL GEIPPQ+T+CAYLNVIDLHDN L+GQIPQQLGLLVRLSAFDVSNNKLS
Sbjct: 119 LAVLNLSSNRLDGEIPPQITMCAYLNVIDLHDNFLSGQIPQQLGLLVRLSAFDVSNNKLS 178

Query: 181 GPIPASLGNRSGNLPKFNASSFEGNKDLYGYPLPPMKSKGLSVLAIVGIGLGSGFASLVI 240
           GPIP SLGNRSGNLP+FNA+SF GNKDLYGYPLPPMK+KGLSVLAIVGIGLGSGFASLV+
Sbjct: 179 GPIPVSLGNRSGNLPRFNATSFLGNKDLYGYPLPPMKTKGLSVLAIVGIGLGSGFASLVL 238

Query: 241 SFTGVCIWLKVTEHKMALDQEGIS 264
           SFTGVCIWLK TE KMAL+   IS
Sbjct: 239 SFTGVCIWLKATEQKMALEDGKIS 262

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127208|ref|XP_002320014.1| predicted protein [Populus trichocarpa] gi|118485007|gb|ABK94368.1| unknown [Populus trichocarpa] gi|222860787|gb|EEE98329.1| predicted protein [Populus trichocarpa]

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 218/259 (84%), Positives = 238/259 (91%), Gaps = 2/259 (0%)

Query: 6   LILFFLLTCAGLPLCSSDPNDEACLTHLSQSLKDPYKNLQNWTKSTFSNACNGFTSYLPG 65
           ++LF LLTC  L    SDP+DEACLTHLSQSLKDP   LQNWT+S F++ C+GFTSYLPG
Sbjct: 6   VLLFTLLTCTNL--SKSDPSDEACLTHLSQSLKDPANLLQNWTRSNFASPCSGFTSYLPG 63

Query: 66  ATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLN 125
           ATCNNGRIYKLSLT+LSLQGS+SPYL+NCTNLQSLDLSSN +TG IPADLQ LVNLAVLN
Sbjct: 64  ATCNNGRIYKLSLTSLSLQGSLSPYLANCTNLQSLDLSSNQITGPIPADLQSLVNLAVLN 123

Query: 126 LSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPA 185
           LS+NRL GEIPPQL +CAYLNVIDLHDN L+GQIPQQLGLLVRLSAFDVSNNKLSGPIPA
Sbjct: 124 LSSNRLEGEIPPQLAMCAYLNVIDLHDNFLSGQIPQQLGLLVRLSAFDVSNNKLSGPIPA 183

Query: 186 SLGNRSGNLPKFNASSFEGNKDLYGYPLPPMKSKGLSVLAIVGIGLGSGFASLVISFTGV 245
           SLGNRSGNLP+FNA+SFEGNKDLYGYPLPPMK+KGLSVLAIVGIGLGSGFASLV+SFTGV
Sbjct: 184 SLGNRSGNLPRFNATSFEGNKDLYGYPLPPMKAKGLSVLAIVGIGLGSGFASLVLSFTGV 243

Query: 246 CIWLKVTEHKMALDQEGIS 264
           CIWLKVTE KMAL++  IS
Sbjct: 244 CIWLKVTEQKMALEEGKIS 262

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579539|ref|XP_002530612.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223529860|gb|EEF31792.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  425 bits (1093), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 210/246 (85%), Positives = 226/246 (91%)

Query: 19  LCSSDPNDEACLTHLSQSLKDPYKNLQNWTKSTFSNACNGFTSYLPGATCNNGRIYKLSL 78
           L +SDPNDEACLTHLSQSLKDP  +LQNWTK   +N C+GF SYL GATCNNGRIYKLSL
Sbjct: 18  LSTSDPNDEACLTHLSQSLKDPTNSLQNWTKPNLANPCSGFNSYLSGATCNNGRIYKLSL 77

Query: 79  TNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQ 138
           TNLSLQGSISPY+SNCTNLQ+LDLSSN+LTG IPADLQYLVNLAVLNLS+NRL GEIP Q
Sbjct: 78  TNLSLQGSISPYISNCTNLQTLDLSSNSLTGPIPADLQYLVNLAVLNLSSNRLEGEIPAQ 137

Query: 139 LTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFN 198
           +  CAYLNVID HDN L+GQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLP+FN
Sbjct: 138 VAYCAYLNVIDFHDNFLSGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPRFN 197

Query: 199 ASSFEGNKDLYGYPLPPMKSKGLSVLAIVGIGLGSGFASLVISFTGVCIWLKVTEHKMAL 258
           A+SF GNKDLYGYPLPPMKSKGLSVLAIVGIGLGSGFASLV+SFTGVCIWLK+TE KMAL
Sbjct: 198 ATSFGGNKDLYGYPLPPMKSKGLSVLAIVGIGLGSGFASLVLSFTGVCIWLKITEQKMAL 257

Query: 259 DQEGIS 264
           ++  IS
Sbjct: 258 EEGKIS 263

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438213|ref|XP_002265055.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Vitis vinifera]

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 208/259 (80%), Positives = 232/259 (89%)

Query: 6   LILFFLLTCAGLPLCSSDPNDEACLTHLSQSLKDPYKNLQNWTKSTFSNACNGFTSYLPG 65
           ++L  LL CA +P   SDP+DEACLTHLS+SL+DP K+LQNWTKSTF+NAC+GFTSYL G
Sbjct: 6   VVLVCLLICARVPSSWSDPDDEACLTHLSESLEDPTKSLQNWTKSTFANACSGFTSYLQG 65

Query: 66  ATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLN 125
           ATCNNGRIYKLSLTNLSL+GSISPYLSNCTNLQSLDLSSN+LTG IP+DLQ LVNLAVLN
Sbjct: 66  ATCNNGRIYKLSLTNLSLRGSISPYLSNCTNLQSLDLSSNSLTGPIPSDLQSLVNLAVLN 125

Query: 126 LSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPA 185
           LS+N L GEIPPQL  CAYLNVIDLHDN L+G IPQQ GLLVRLSAFDVSNN+LSGPIP 
Sbjct: 126 LSSNHLDGEIPPQLAFCAYLNVIDLHDNSLSGPIPQQFGLLVRLSAFDVSNNRLSGPIPP 185

Query: 186 SLGNRSGNLPKFNASSFEGNKDLYGYPLPPMKSKGLSVLAIVGIGLGSGFASLVISFTGV 245
           +LGNRSGN P+FNASSFEGNKDLYGYPL P+KS+GLS+LAIVGIGLGSGF SLV+SFT V
Sbjct: 186 NLGNRSGNFPRFNASSFEGNKDLYGYPLAPLKSRGLSILAIVGIGLGSGFVSLVLSFTAV 245

Query: 246 CIWLKVTEHKMALDQEGIS 264
           CIWL+VTE KMA ++  IS
Sbjct: 246 CIWLRVTEEKMASEEGKIS 264

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451321|ref|XP_004143410.1| PREDICTED: receptor-like protein kinase BRI1-like 3-like [Cucumis sativus] gi|449531880|ref|XP_004172913.1| PREDICTED: receptor-like protein kinase BRI1-like 3-like [Cucumis sativus]

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 201/265 (75%), Positives = 231/265 (87%), Gaps = 1/265 (0%)

Query: 1   MAGCTLILFFLLTCAGL-PLCSSDPNDEACLTHLSQSLKDPYKNLQNWTKSTFSNACNGF 59
           M GCTL++F LL  A   PL SSDPNDEACL +LSQSL+DP  +L NWT+S  +N CNGF
Sbjct: 1   MVGCTLLIFGLLASAAFFPLSSSDPNDEACLVNLSQSLEDPTNSLHNWTQSNLANPCNGF 60

Query: 60  TSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLV 119
            SY+ GATCN+GRIYKLSL NLSL+G+ISP+L+NCTNLQ+LDLSSN LTG IP+DLQYLV
Sbjct: 61  NSYIHGATCNSGRIYKLSLNNLSLRGTISPFLANCTNLQALDLSSNFLTGPIPSDLQYLV 120

Query: 120 NLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKL 179
           NLAVLNLSANRL  +IP +L  CAYLNVIDLHDNLLTGQIPQ+LGLLVRLS FDVSNN+L
Sbjct: 121 NLAVLNLSANRLTDQIPQELAFCAYLNVIDLHDNLLTGQIPQRLGLLVRLSTFDVSNNRL 180

Query: 180 SGPIPASLGNRSGNLPKFNASSFEGNKDLYGYPLPPMKSKGLSVLAIVGIGLGSGFASLV 239
           SGPIP++LGNRSGNLPKFNASSFEGNKDLYGYPL P+K++GLSV+AIVGIGLGSG  SLV
Sbjct: 181 SGPIPSTLGNRSGNLPKFNASSFEGNKDLYGYPLAPLKNRGLSVIAIVGIGLGSGLVSLV 240

Query: 240 ISFTGVCIWLKVTEHKMALDQEGIS 264
           +SFT VCIWLK+TE KM +++  IS
Sbjct: 241 LSFTAVCIWLKITERKMVVEEGKIS 265

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090644|emb|CBI41043.3| unnamed protein product [Vitis vinifera]

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 200/241 (82%), Positives = 221/241 (91%)

Query: 24  PNDEACLTHLSQSLKDPYKNLQNWTKSTFSNACNGFTSYLPGATCNNGRIYKLSLTNLSL 83
           P+DEACLTHLS+SL+DP K+LQNWTKSTF+NAC+GFTSYL GATCNNGRIYKLSLTNLSL
Sbjct: 37  PDDEACLTHLSESLEDPTKSLQNWTKSTFANACSGFTSYLQGATCNNGRIYKLSLTNLSL 96

Query: 84  QGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCA 143
           +GSISPYLSNCTNLQSLDLSSN+LTG IP+DLQ LVNLAVLNLS+N L GEIPPQL  CA
Sbjct: 97  RGSISPYLSNCTNLQSLDLSSNSLTGPIPSDLQSLVNLAVLNLSSNHLDGEIPPQLAFCA 156

Query: 144 YLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFE 203
           YLNVIDLHDN L+G IPQQ GLLVRLSAFDVSNN+LSGPIP +LGNRSGN P+FNASSFE
Sbjct: 157 YLNVIDLHDNSLSGPIPQQFGLLVRLSAFDVSNNRLSGPIPPNLGNRSGNFPRFNASSFE 216

Query: 204 GNKDLYGYPLPPMKSKGLSVLAIVGIGLGSGFASLVISFTGVCIWLKVTEHKMALDQEGI 263
           GNKDLYGYPL P+KS+GLS+LAIVGIGLGSGF SLV+SFT VCIWL+VTE KMA ++  I
Sbjct: 217 GNKDLYGYPLAPLKSRGLSILAIVGIGLGSGFVSLVLSFTAVCIWLRVTEEKMASEEGKI 276

Query: 264 S 264
           S
Sbjct: 277 S 277

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482503|ref|XP_003611538.1| Receptor-like protein kinase [Medicago truncatula] gi|355512873|gb|AES94496.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/264 (72%), Positives = 224/264 (84%), Gaps = 1/264 (0%)

Query: 2   AGCTLILFFLLTCAGLPLCSSDPNDEACLTHLSQSLKDPYKNLQNWTKSTFSNACNGFTS 61
             C + L  +L    +    SDP+DEACLTHL++SL+DP K+L+NW ++TFS  CN  TS
Sbjct: 3   VACLMKLVLMLWITLITSIKSDPSDEACLTHLNKSLQDPNKSLENWNEATFSKPCNESTS 62

Query: 62  YLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNL 121
            L G  CNNGRIYKLSL NLSL+G+ISP+LSNCTNLQ+LDLSSN +TG IP +LQ LVNL
Sbjct: 63  TLKGILCNNGRIYKLSLNNLSLRGTISPFLSNCTNLQTLDLSSNFITGPIPPELQSLVNL 122

Query: 122 AVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSG 181
           AVLNLS+NRL GEIPPQLTLCAYLN+ID HDNLLTG IPQQLGLLVRLSAFDVSNNKLSG
Sbjct: 123 AVLNLSSNRLEGEIPPQLTLCAYLNIIDFHDNLLTGPIPQQLGLLVRLSAFDVSNNKLSG 182

Query: 182 PIPASLGNRSG-NLPKFNASSFEGNKDLYGYPLPPMKSKGLSVLAIVGIGLGSGFASLVI 240
           PIPASL NRS  NLP+FNASSFEGNKDLYGYPLPP+++KGLS++AIV IG+GSG ASL+I
Sbjct: 183 PIPASLSNRSSPNLPRFNASSFEGNKDLYGYPLPPLRTKGLSIMAIVLIGVGSGLASLII 242

Query: 241 SFTGVCIWLKVTEHKMALDQEGIS 264
           SFTGVCIWLKVT+ K+AL++  +S
Sbjct: 243 SFTGVCIWLKVTDRKVALEEGKVS 266

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497017|ref|XP_003517361.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Glycine max]

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/248 (76%), Positives = 218/248 (87%)

Query: 17  LPLCSSDPNDEACLTHLSQSLKDPYKNLQNWTKSTFSNACNGFTSYLPGATCNNGRIYKL 76
           +P   SDP+DEAC+THLS+SL+DP   L NW +  F+N CN  T+ L GA CNNGRI+KL
Sbjct: 15  IPGILSDPSDEACMTHLSKSLQDPNNQLHNWKEENFANPCNDSTTNLRGAICNNGRIFKL 74

Query: 77  SLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIP 136
           SL NLSL+G+ISP+LSNCTNLQ+LDLSSN LTG IPADLQ LVNLAVLNLS+NRL G IP
Sbjct: 75  SLNNLSLRGTISPFLSNCTNLQALDLSSNFLTGPIPADLQSLVNLAVLNLSSNRLEGVIP 134

Query: 137 PQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPK 196
           PQLT+CAYLN+IDLHDNL TG IPQQLGLLVRLSAFDVSNN+LSGPIPASL NRSGNLP+
Sbjct: 135 PQLTMCAYLNIIDLHDNLFTGPIPQQLGLLVRLSAFDVSNNRLSGPIPASLSNRSGNLPR 194

Query: 197 FNASSFEGNKDLYGYPLPPMKSKGLSVLAIVGIGLGSGFASLVISFTGVCIWLKVTEHKM 256
           FNASSF GNKDLYGYPLPP++++GLS+LAIVGIGLGSG ASLV+SFTGVCIWLK+T+ KM
Sbjct: 195 FNASSFLGNKDLYGYPLPPLRNRGLSLLAIVGIGLGSGLASLVLSFTGVCIWLKITDRKM 254

Query: 257 ALDQEGIS 264
           AL++  I+
Sbjct: 255 ALEEGKIT 262

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15229606|ref|NP_190544.1| receptor like protein 44 [Arabidopsis thaliana] gi|6723420|emb|CAB66913.1| putative protein [Arabidopsis thaliana] gi|30102624|gb|AAP21230.1| At3g49750 [Arabidopsis thaliana] gi|110736034|dbj|BAE99989.1| hypothetical protein [Arabidopsis thaliana] gi|332645065|gb|AEE78586.1| receptor like protein 44 [Arabidopsis thaliana]

 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 189/248 (76%), Positives = 215/248 (86%), Gaps = 2/248 (0%)

Query: 19  LCSSDPNDEACLTHLSQSLKDPYKNLQNWTKSTFSNACNGFTSYLPGATCNNGRIYKLSL 78
           L ++DPNDEACL +L Q+L+DP  NL+NWT S FSN C+GFTSYLPGATCNNGRIYKLSL
Sbjct: 21  LTTADPNDEACLKNLRQNLEDPASNLRNWTNSVFSNPCSGFTSYLPGATCNNGRIYKLSL 80

Query: 79  TNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQ 138
           TNLSL+GSISP+LSNCTNLQSLDLSSN ++G IP ++QYLVNLAVLNLS+N L+GEI PQ
Sbjct: 81  TNLSLRGSISPFLSNCTNLQSLDLSSNQISGVIPPEIQYLVNLAVLNLSSNHLSGEITPQ 140

Query: 139 LTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFN 198
           L LCAYLNVIDLHDN L+GQIPQQLGLL RLSAFDVSNNKLSG IP  L NR+GN P+FN
Sbjct: 141 LALCAYLNVIDLHDNELSGQIPQQLGLLARLSAFDVSNNKLSGQIPTYLSNRTGNFPRFN 200

Query: 199 ASSFEGNKDLYGYPLPP--MKSKGLSVLAIVGIGLGSGFASLVISFTGVCIWLKVTEHKM 256
           ASSF GNK LYGYPL    MKSKGLSV+AIVGIGLGSG ASL+ISFTGVC+WL++TE K+
Sbjct: 201 ASSFIGNKGLYGYPLQEMMMKSKGLSVMAIVGIGLGSGIASLMISFTGVCLWLRITEKKI 260

Query: 257 ALDQEGIS 264
             ++  IS
Sbjct: 261 VEEEGKIS 268

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819628|ref|XP_002877697.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297323535|gb|EFH53956.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 187/248 (75%), Positives = 216/248 (87%), Gaps = 2/248 (0%)

Query: 19  LCSSDPNDEACLTHLSQSLKDPYKNLQNWTKSTFSNACNGFTSYLPGATCNNGRIYKLSL 78
           L ++DPNDEACL +L Q+L+DP  NL+NWT S FSN C+GFTSYLPGATCNNGRIYKLSL
Sbjct: 25  LTTADPNDEACLKNLRQNLEDPASNLRNWTNSVFSNPCSGFTSYLPGATCNNGRIYKLSL 84

Query: 79  TNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQ 138
           TNLSL+G+ISP+LSNCTNLQSLDLSSN ++G IP ++Q+LVNLAVLNLS+N+L+GEI PQ
Sbjct: 85  TNLSLRGTISPFLSNCTNLQSLDLSSNQISGIIPPEIQFLVNLAVLNLSSNQLSGEITPQ 144

Query: 139 LTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFN 198
           L LCAYLNVIDLHDN L+GQIPQQLGLL RLSAFDVSNNKLSG IP  L NR+GN P+FN
Sbjct: 145 LALCAYLNVIDLHDNQLSGQIPQQLGLLARLSAFDVSNNKLSGQIPTYLSNRTGNFPRFN 204

Query: 199 ASSFEGNKDLYGYPLPP--MKSKGLSVLAIVGIGLGSGFASLVISFTGVCIWLKVTEHKM 256
           ASSF GNK LYGYPL    MKSKGLSV+AIVGIGLGSG ASL+ISFTGVC+WL++TE K+
Sbjct: 205 ASSFIGNKGLYGYPLQEMMMKSKGLSVMAIVGIGLGSGIASLMISFTGVCLWLRITEKKI 264

Query: 257 ALDQEGIS 264
             ++  IS
Sbjct: 265 VEEEGKIS 272

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
TAIR|locus:2097305	274	RLP44 "AT3G49750" [Arabidopsis	0.966	0.934	0.694	1.5e-92
TAIR|locus:2156218	279	RLP57 "AT5G65830" [Arabidopsis	0.966	0.917	0.682	6.5e-90
TAIR|locus:2088937	605	AT3G28450 [Arabidopsis thalian	0.928	0.406	0.351	4e-32
TAIR|locus:2205834	601	AT1G27190 [Arabidopsis thalian	0.845	0.372	0.353	1.2e-26
TAIR|locus:2020558	591	AT1G69990 [Arabidopsis thalian	0.886	0.397	0.322	1.7e-24
TAIR|locus:2165981	620	BIR1 "AT5G48380" [Arabidopsis	0.871	0.372	0.326	6.5e-23
TAIR|locus:2026097	628	SERK2 "somatic embryogenesis r	0.739	0.312	0.344	1.6e-20
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.686	0.145	0.365	1.7e-19
TAIR|locus:2040461	620	SERK4 "somatic embryogenesis r	0.867	0.370	0.325	1.9e-19
TAIR|locus:2050877	691	AT2G45340 [Arabidopsis thalian	0.830	0.318	0.340	2.3e-19

TAIR|locus:2097305 RLP44 "AT3G49750" [Arabidopsis thaliana (taxid:3702)]

 Score = 922 (329.6 bits), Expect = 1.5e-92, P = 1.5e-92
 Identities = 180/259 (69%), Positives = 207/259 (79%)

Query:     6 LILFFLLTCAGLPLCSSDPNDEACLTHLSQSLKDPYKNLQNWTKSTFSNACNGFTSYLPG 65
             L+L  L+      L ++DPNDEACL +L Q+L+DP  NL+NWT S FSN C+GFTSYLPG
Sbjct:     8 LLLLLLIFQTAQRLTTADPNDEACLKNLRQNLEDPASNLRNWTNSVFSNPCSGFTSYLPG 67

Query:    66 ATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYXXXXXXXX 125
             ATCNNGRIYKLSLTNLSL+GSISP+LSNCTNLQSLDLSSN ++G IP ++QY        
Sbjct:    68 ATCNNGRIYKLSLTNLSLRGSISPFLSNCTNLQSLDLSSNQISGVIPPEIQYLVNLAVLN 127

Query:   126 XXXXXXXGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPA 185
                    GEI PQL LCAYLNVIDLHDN L+GQIPQQLGLL RLSAFDVSNNKLSG IP 
Sbjct:   128 LSSNHLSGEITPQLALCAYLNVIDLHDNELSGQIPQQLGLLARLSAFDVSNNKLSGQIPT 187

Query:   186 SLGNRSGNLPKFNASSFEGNKDLYGYPLPPM--KSKGLSVLAIVGIGLGSGFASLVISFT 243
              L NR+GN P+FNASSF GNK LYGYPL  M  KSKGLSV+AIVGIGLGSG ASL+ISFT
Sbjct:   188 YLSNRTGNFPRFNASSFIGNKGLYGYPLQEMMMKSKGLSVMAIVGIGLGSGIASLMISFT 247

Query:   244 GVCIWLKVTEHKMALDQEG 262
             GVC+WL++TE K+ +++EG
Sbjct:   248 GVCLWLRITEKKI-VEEEG 265

GO:0007165 "signal transduction" evidence=IC

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2156218 RLP57 "AT5G65830" [Arabidopsis thaliana (taxid:3702)]

 Score = 897 (320.8 bits), Expect = 6.5e-90, P = 6.5e-90
 Identities = 176/258 (68%), Positives = 203/258 (78%)

Query:     6 LILFFLLTC-AGLPLCSSDPNDEACLTHLSQSLKDPYKNLQNWTKSTFSNACNGFTSYLP 64
             L L FLL+      L + DPNDEACLT+L QSL+DP  NL+NWTKS F N C+GF+SYL 
Sbjct:    14 LFLIFLLSFETAQRLVTGDPNDEACLTNLRQSLEDPANNLRNWTKSFFINPCSGFSSYLH 73

Query:    65 GATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYXXXXXXX 124
             G  CNNGRIYKLSLTNLSL+GSISP+LSNCTNLQSLDLSSN ++G IP  LQ+       
Sbjct:    74 GVICNNGRIYKLSLTNLSLRGSISPFLSNCTNLQSLDLSSNQISGEIPPQLQFFVNLAVL 133

Query:   125 XXXXXXXXGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIP 184
                     G+I PQ+ LCAYLNVIDLHDN L+GQIP Q GLL RL+AFDVSNNKLSG IP
Sbjct:   134 NLSSNRLSGQISPQIALCAYLNVIDLHDNQLSGQIPFQFGLLARLTAFDVSNNKLSGQIP 193

Query:   185 ASLGNRSGNLPKFNASSFEGNKDLYGYPLPPMKSKGLSVLAIVGIGLGSGFASLVISFTG 244
             ++L  R+GNLP+FNASSF GNK L+GYPL  MK+KGLS++AIVGIGLGSG ASLVISFTG
Sbjct:   194 SNLAMRNGNLPRFNASSFIGNKKLFGYPLEEMKNKGLSIMAIVGIGLGSGIASLVISFTG 253

Query:   245 VCIWLKVTEHKMALDQEG 262
             VCIWLK+TE KM  ++EG
Sbjct:   254 VCIWLKITEKKME-EEEG 270

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2088937 AT3G28450 [Arabidopsis thaliana (taxid:3702)]

 Score = 357 (130.7 bits), Expect = 4.0e-32, P = 4.0e-32
 Identities = 95/270 (35%), Positives = 136/270 (50%)

Query:     7 ILFFLLTCAGLPLCSSDPNDEACLTHLSQSLKDPYKNLQNWTKSTFSNACNGFTSYLPGA 66
             + F +  C    + ++D +D  CL  L  SL DP   L++W    F N   GF     G 
Sbjct:    14 LCFIIFLCFCSSVMAADEDDIRCLRGLKASLTDPQNALKSWN---FDNTTLGFLCNFVGV 70

Query:    67 TC-NN--GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADL-QYXXXXX 122
             +C NN   R+  L L ++ L G I   L  C +LQ LDLSSN L+G+IP +L  +     
Sbjct:    71 SCWNNQENRVINLELRDMGLSGKIPDSLQYCASLQKLDLSSNRLSGNIPTELCNWLPFLV 130

Query:   123 XXXXXXXXXXGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGP 182
                       GEIPP L  C+++N + L DN L+GQIP Q   L RL  F V+NN LSG 
Sbjct:   131 SLDLSNNELNGEIPPDLAKCSFVNSLVLSDNRLSGQIPVQFSALGRLGRFSVANNDLSGR 190

Query:   183 IPASLGNRSGNLPKFNASSFEGNKDLYGYPLPP----MKSKGLSVLAIVGIGLGSGFASL 238
             IP    +     P +++  F GNK L G PL      +  K L ++   G+  G+  AS+
Sbjct:   191 IPVFFSS-----PSYSSDDFSGNKGLCGRPLSSSCGGLSKKNLGIIIAAGV-FGAA-ASM 243

Query:   239 VISFTGVCIW---LKVTEHKMA-LDQEGIS 264
             +++F G+  W   LK T  + + L + G+S
Sbjct:   244 LLAF-GIW-WYYHLKWTRRRRSGLTEVGVS 271

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2205834 AT1G27190 [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 87/246 (35%), Positives = 117/246 (47%)

Query:     6 LILFFLLTCAGLPLCSSDP--NDEACLTHLSQSLKDPYKNLQNWTKSTFSNACNGFTSYL 63
             + L +LL  +   LCSS    +D  CL  L  SL DP   L +W+   F N+       L
Sbjct:     6 ITLLWLLFISSF-LCSSSSAEDDVLCLQGLKNSLIDPSSRLSSWS---FPNSSASSICKL 61

Query:    64 PGATCNN---GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADL-QYXX 119
              G +C N    RI  L L ++ L G I   L  C +LQSLDLS N L+GSIP+ +  +  
Sbjct:    62 TGVSCWNEKENRIISLQLQSMQLAGEIPESLKLCRSLQSLDLSGNDLSGSIPSQICSWLP 121

Query:   120 XXXXXXXXXXXXXGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKL 179
                          G IP Q+  C +LN + L DN L+G IP QL  L RL    ++ N L
Sbjct:   122 YLVTLDLSGNKLGGSIPTQIVECKFLNALILSDNKLSGSIPSQLSRLDRLRRLSLAGNDL 181

Query:   180 SGPIPASLGNRSGNLPKFNASSFEGNKDLYGYPLP---PMKSKGLSVLAIVGI--GLGSG 234
             SG IP+ L        +F    F GN  L G PL     +  + LS++ + G+   +GS 
Sbjct:   182 SGTIPSELA-------RFGGDDFSGNNGLCGKPLSRCGALNGRNLSIIIVAGVLGAVGSL 234

Query:   235 FASLVI 240
                LVI
Sbjct:   235 CVGLVI 240

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

TAIR|locus:2020558 AT1G69990 [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 1.7e-24, P = 1.7e-24
 Identities = 83/257 (32%), Positives = 120/257 (46%)

Query:     5 TLILFFLLTCAGLPLCSSDPNDEA-CLTHLSQSLKDPYKNLQNWTKSTFSNACNGFTSYL 63
             T+ +FF++    + + SS   D+  CL     SLKDP   L  W+   F N+ +     L
Sbjct:     3 TISIFFVI----ILMSSSHAEDDVLCLKGFKSSLKDPSNQLNTWS---FPNSSSSICK-L 54

Query:    64 PGATCNNG---RIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADL-QYXX 119
              G +C N    RI  L L ++ L G I   L  C +LQSLDLS N  +G IP+ +  +  
Sbjct:    55 TGVSCWNAKENRILSLQLQSMQLSGQIPESLKLCRSLQSLDLSFNDFSGLIPSQICSWLP 114

Query:   120 XXXXXXXXXXXXXGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKL 179
                          G IP Q+  C +LN + L+ N LTG IP +L  L RL    +++N L
Sbjct:   115 YLVTLDLSGNKLSGSIPSQIVDCKFLNSLALNQNKLTGSIPSELTRLNRLQRLSLADNDL 174

Query:   180 SGPIPASLGNRSGNLPKFNASSFEGNKDLYGYPLPPMKS-KGLSVLAIVGIGLGSGFASL 238
             SG IP+ L +       +    F GN  L G PL    S  G ++  IV  G+     SL
Sbjct:   175 SGSIPSELSH-------YGEDGFRGNGGLCGKPLSNCGSFNGKNLTIIVTAGVIGAVGSL 227

Query:   239 VISFTGVCIWLKVTEHK 255
              + F G+  W  + + +
Sbjct:   228 CVGF-GMFWWFFIRDRR 243

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005575 "cellular_component" evidence=ND

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2165981 BIR1 "AT5G48380" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 6.5e-23, P = 6.5e-23
 Identities = 82/251 (32%), Positives = 115/251 (45%)

Query:     1 MAGCTLILFFLLTCAGLPLCSSDPN-DEA---CLTHLSQSLKDPYKNLQNWTKSTFSNAC 56
             M G  + + +L  C  L L SS  + D+A   CL      ++DP + L  W    F N  
Sbjct:     2 MMGRLVFVIWLYNCLCLLLLSSLVDADQANIDCLRTFKSQVEDPNRYLSTWV---FGNET 58

Query:    57 NGFTSYLPGATC---NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPA 113
              G+     G TC   +  R+  + L+   L+G   P +  C +L  LDLS N  +G +PA
Sbjct:    59 AGYICKFSGVTCWHDDENRVLSIKLSGYGLRGVFPPAVKLCADLTGLDLSRNNFSGPLPA 118

Query:   114 DLQYXX-XXXXXXXXXXXXXGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAF 172
             ++                  GEIP  ++   +LN + L  N  TG +P QL  L RL  F
Sbjct:   119 NISTLIPLVTILDLSYNSFSGEIPMLISNITFLNTLMLQHNQFTGTLPPQLAQLGRLKTF 178

Query:   173 DVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYPLPPMKSKGLS---VLAIVGI 229
              VS+N+L GPIP    N +  L +F    F  N DL G PL   KS   S   V+ I  +
Sbjct:   179 SVSDNRLVGPIP----NFNQTL-QFKQELFANNLDLCGKPLDDCKSASSSRGKVVIIAAV 233

Query:   230 GLGSGFASLVI 240
             G G   A+LV+
Sbjct:   234 G-GLTAAALVV 243

GO:0004672 "protein kinase activity" evidence=ISS;IDA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0016301 "kinase activity" evidence=IDA

GO:0031348 "negative regulation of defense response" evidence=RCA;IMP

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=IDA

GO:0060548 "negative regulation of cell death" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2026097 SERK2 "somatic embryogenesis receptor-like kinase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 1.6e-20, P = 1.6e-20
 Identities = 72/209 (34%), Positives = 96/209 (45%)

Query:     3 GCTLILFFLLTCAGLPLCSSDPNDEACLTHLSQSLKDPYKNLQNWTKSTFSNACNGFTSY 62
             G   ++  LL    L L SS+   +A L  L  +L DP   LQ+W   T  N C  F   
Sbjct:    10 GFVCLISLLLLFNSLWLASSNMEGDA-LHSLRANLVDPNNVLQSWDP-TLVNPCTWFH-- 65

Query:    63 LPGATCNN-GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYXXXX 121
                 TCNN   + ++ L N  L G + P L    NLQ L+L SN +TG +P+DL      
Sbjct:    66 ---VTCNNENSVIRVDLGNADLSGQLVPQLGQLKNLQYLELYSNNITGPVPSDLGNLTNL 122

Query:   122 XXXXXXXXXXXGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSG 181
                        G IP  L     L  + L++N LTG IP  L  ++ L   D+SNN+LSG
Sbjct:   123 VSLDLYLNSFTGPIPDSLGKLFKLRFLRLNNNSLTGPIPMSLTNIMTLQVLDLSNNRLSG 182

Query:   182 PIPASLGNRSGNLPKFNASSFEGNKDLYG 210
              +P +     G+   F   SF  N DL G
Sbjct:   183 SVPDN-----GSFSLFTPISFANNLDLCG 206

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009556 "microsporogenesis" evidence=IGI;IMP

GO:0010152 "pollen maturation" evidence=IMP

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IMP

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 1.7e-19, P = 1.7e-19
 Identities = 71/194 (36%), Positives = 96/194 (49%)

Query:     1 MAGCTLILFFLLTCAGLPLCSSDPNDEACLTHLSQSL-KDPYKN--LQNWTKSTFSNACN 57
             M    L+L F+L  +GL       ND   L  + +SL  +P ++  L+ W      N C+
Sbjct:     1 MQPLVLLLLFILCFSGLGQPGIINNDLQTLLEVKKSLVTNPQEDDPLRQWNSDNI-NYCS 59

Query:    58 GFTSYLPGATCNN-G--RIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPAD 114
              +T    G TC+N G  R+  L+LT L L GSISP+     NL  LDLSSN L G IP  
Sbjct:    60 -WT----GVTCDNTGLFRVIALNLTGLGLTGSISPWFGRFDNLIHLDLSSNNLVGPIPTA 114

Query:   115 LQYXXXXXXXXXXXXXXXGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDV 174
             L                 GEIP QL     +  + + DN L G IP+ LG LV L    +
Sbjct:   115 LSNLTSLESLFLFSNQLTGEIPSQLGSLVNIRSLRIGDNELVGDIPETLGNLVNLQMLAL 174

Query:   175 SNNKLSGPIPASLG 188
             ++ +L+GPIP+ LG
Sbjct:   175 ASCRLTGPIPSQLG 188

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2040461 SERK4 "somatic embryogenesis receptor-like kinase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 85/261 (32%), Positives = 114/261 (43%)

Query:     4 CTLILFFLLTCAGLPLCSSDPNDEACLTHLSQSLK--DPYKN-LQNWTKSTFSNACNGFT 60
             C L L  L     L +  +   D   LT L  SL   DP  N LQ+W  +T    C  F 
Sbjct:    13 CFLYLLLLFNFT-LRVAGNAEGD--ALTQLKNSLSSGDPANNVLQSWD-ATLVTPCTWFH 68

Query:    61 SYLPGATCN-NGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYXX 119
                   TCN   ++ ++ L N  L G + P L    NLQ L+L SN +TG IP +L    
Sbjct:    69 -----VTCNPENKVTRVDLGNAKLSGKLVPELGQLLNLQYLELYSNNITGEIPEELGDLV 123

Query:   120 XXXXXXXXXXXXXGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKL 179
                          G IP  L     L  + L++N L+G+IP  L   V+L   D+SNN+L
Sbjct:   124 ELVSLDLYANSISGPIPSSLGKLGKLRFLRLNNNSLSGEIPMTL-TSVQLQVLDISNNRL 182

Query:   180 SGPIPASLGNRSGNLPKFNASSFEGNK--DL------YGYPLPPMKSKGLSVLAIVGIGL 231
             SG IP +     G+   F   SF  N   DL         P PP  S G    AI G G+
Sbjct:   183 SGDIPVN-----GSFSLFTPISFANNSLTDLPEPPPTSTSPTPPPPSGGQMTAAIAG-GV 236

Query:   232 GSGFASLVISFTGVCI--WLK 250
              +G A+L+ +   +    WL+
Sbjct:   237 AAG-AALLFAVPAIAFAWWLR 256

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0060548 "negative regulation of cell death" evidence=IMP

GO:1900140 "regulation of seedling development" evidence=IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0008219 "cell death" evidence=IGI

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IGI

GO:0010150 "leaf senescence" evidence=IGI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

TAIR|locus:2050877 AT2G45340 [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 2.3e-19, P = 2.3e-19
 Identities = 81/238 (34%), Positives = 117/238 (49%)

Query:     6 LILFFLLTCAGLPLCSSDPNDEACLTHLSQSLKDPYKN-LQNWTKSTFSNACNGFTSYLP 64
             LILFF    + L   SS  ++   L  +  SL DP K  L +WT    ++ C+  +    
Sbjct:     9 LILFFFFLSSAL---SSSSSELDILLDIKSSL-DPEKRFLTSWTPD--ADPCS--SGSFD 60

Query:    65 GATCN-NGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYXXXXXX 123
             G  C+ N R+  +SL  + L G+I P +   T+L  L L  N+LTG IP D+        
Sbjct:    61 GVACDGNRRVANISLQGMGLTGTIPPSIGLLTSLTGLYLHFNSLTGHIPKDISNLPLLTD 120

Query:   124 XXXXXXXXXGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPI 183
                      GEIPP +     L VI L  N L+G IP Q G L +++   +  N+LSG I
Sbjct:   121 LYLNVNNLSGEIPPLIGNLDNLQVIQLCYNKLSGSIPTQFGSLKKITVLALQYNQLSGAI 180

Query:   184 PASLGNRSGNLPKFNASSFEGNKDLYGYPLPPMKSKGLSVLAIVGIGLGSGFASLVIS 241
             PASLG+    L + + S F    +L+G P+P +K  G  +L ++ I   S F+  V S
Sbjct:   181 PASLGDID-TLTRLDLS-FN---NLFG-PVP-VKLAGAPLLEVLDIRNNS-FSGFVPS 230

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010075 "regulation of meristem growth" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	grail3.0019036401	hypothetical protein (268 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pg.C_scaffold_9298000001	hypothetical protein (238 aa)			•						0.450
	eugene3.02660005	hypothetical protein (277 aa)			•						0.439
	eugene3.02220012	annotation not avaliable (196 aa)			•						0.429

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	265
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-22
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-20
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-20
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-20
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-19
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-17
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-17
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-15
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-11
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-04

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 94.9 bits (236), Expect = 5e-22
 Identities = 56/158 (35%), Positives = 81/158 (51%), Gaps = 11/158 (6%)

Query: 36  SLKDPYKNLQNWTKSTFSNACNGFTSYLPGATCNN-GRIYKLSLTNLSLQGSISPYLSNC 94
           S+ DP K L NW  S  ++ C        G TCNN  R+  + L+  ++ G IS  +   
Sbjct: 40  SINDPLKYLSNWNSS--ADVCLWQ-----GITCNNSSRVVSIDLSGKNISGKISSAIFRL 92

Query: 95  TNLQSLDLSSNALTGSIPADLQYLV-NLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDN 153
             +Q+++LS+N L+G IP D+     +L  LNLS N   G IP        L  +DL +N
Sbjct: 93  PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN--LETLDLSNN 150

Query: 154 LLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRS 191
           +L+G+IP  +G    L   D+  N L G IP SL N +
Sbjct: 151 MLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLT 188

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 89.9 bits (223), Expect = 2e-20
 Identities = 60/159 (37%), Positives = 84/159 (52%), Gaps = 14/159 (8%)

Query: 33  LSQSLKDPYKNLQNWTKSTFSNACNGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLS 92
            S SL+  Y NL N          N FT  +P  +  N  +  L L+N  L G I   + 
Sbjct: 116 TSSSLR--YLNLSN----------NNFTGSIPRGSIPN--LETLDLSNNMLSGEIPNDIG 161

Query: 93  NCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHD 152
           + ++L+ LDL  N L G IP  L  L +L  L L++N+L G+IP +L     L  I L  
Sbjct: 162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY 221

Query: 153 NLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRS 191
           N L+G+IP ++G L  L+  D+  N L+GPIP+SLGN  
Sbjct: 222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLK 260

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 90.3 bits (224), Expect = 2e-20
 Identities = 57/149 (38%), Positives = 73/149 (48%), Gaps = 3/149 (2%)

Query: 100 LDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQI 159
           L L +  L G IP D+  L +L  +NLS N + G IPP L     L V+DL  N   G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 160 PQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYPLPPMKSK 219
           P+ LG L  L   +++ N LSG +PA+LG R  +   FN   F  N  L G P       
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN---FTDNAGLCGIPGLRACGP 539

Query: 220 GLSVLAIVGIGLGSGFASLVISFTGVCIW 248
            LSV A +GI  G   A L +    +C W
Sbjct: 540 HLSVGAKIGIAFGVSVAFLFLVICAMCWW 568

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 89.5 bits (222), Expect = 3e-20
 Identities = 71/207 (34%), Positives = 94/207 (45%), Gaps = 46/207 (22%)

Query: 57  NGFTSYLPGATCNNGRIYKLSLTNLSLQGSIS-----------------------PYLSN 93
           N F+  LP        +Y L ++N +LQG I+                       P    
Sbjct: 414 NSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG 473

Query: 94  CTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDN 153
              L++LDLS N  +G++P  L  L  L  L LS N+L+GEIP +L+ C  L  +DL  N
Sbjct: 474 SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHN 533

Query: 154 LLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRS-------------GNLPK---- 196
            L+GQIP     +  LS  D+S N+LSG IP +LGN               G+LP     
Sbjct: 534 QLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAF 593

Query: 197 --FNASSFEGNKDLYG----YPLPPMK 217
              NAS+  GN DL G      LPP K
Sbjct: 594 LAINASAVAGNIDLCGGDTTSGLPPCK 620

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 85.7 bits (212), Expect = 7e-19
 Identities = 55/140 (39%), Positives = 75/140 (53%), Gaps = 1/140 (0%)

Query: 57  NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQ 116
           N  T  +P +  N   +  L L    L G I P + +   L SLDLS N+L+G IP  + 
Sbjct: 246 NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI 305

Query: 117 YLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSN 176
            L NL +L+L +N   G+IP  LT    L V+ L  N  +G+IP+ LG    L+  D+S 
Sbjct: 306 QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLST 365

Query: 177 NKLSGPIPASLGNRSGNLPK 196
           N L+G IP  L + SGNL K
Sbjct: 366 NNLTGEIPEGLCS-SGNLFK 384

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 82.2 bits (203), Expect = 1e-17
 Identities = 57/165 (34%), Positives = 72/165 (43%), Gaps = 13/165 (7%)

Query: 57  NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQ 116
           N FT  +P A  +  R+  L L +    G I   L    NL  LDLS+N LTG IP  L 
Sbjct: 318 NNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC 377

Query: 117 YLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSN 176
              NL  L L +N L GEIP  L  C  L  + L DN  +G++P +   L  +   D+SN
Sbjct: 378 SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISN 437

Query: 177 NKLSGPIPA-------------SLGNRSGNLPKFNASSFEGNKDL 208
           N L G I +             +     G LP    S    N DL
Sbjct: 438 NNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDL 482

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 80.3 bits (198), Expect = 5e-17
 Identities = 47/116 (40%), Positives = 60/116 (51%)

Query: 76  LSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEI 135
           L L   +L G I   L N  NLQ L L  N L+G IP  +  L  L  L+LS N L+GEI
Sbjct: 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300

Query: 136 PPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRS 191
           P  +     L ++ L  N  TG+IP  L  L RL    + +NK SG IP +LG  +
Sbjct: 301 PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN 356

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 75.3 bits (185), Expect = 2e-15
 Identities = 53/135 (39%), Positives = 71/135 (52%), Gaps = 6/135 (4%)

Query: 57  NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQ 116
           N  +  +P +  +  ++  L L++ SL G I   +    NL+ L L SN  TG IP  L 
Sbjct: 270 NKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT 329

Query: 117 YLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQL---GLLVRLSAFD 173
            L  L VL L +N+ +GEIP  L     L V+DL  N LTG+IP+ L   G L +L  F 
Sbjct: 330 SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILF- 388

Query: 174 VSNNKLSGPIPASLG 188
             +N L G IP SLG
Sbjct: 389 --SNSLEGEIPKSLG 401

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 68.7 bits (168), Expect = 4e-13
 Identities = 56/152 (36%), Positives = 74/152 (48%), Gaps = 7/152 (4%)

Query: 73  IYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA 132
           IY L   NLS  G I   +   T+L  LDL  N LTG IP+ L  L NL  L L  N+L+
Sbjct: 217 IY-LGYNNLS--GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS 273

Query: 133 GEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSG 192
           G IPP +     L  +DL DN L+G+IP+ +  L  L    + +N  +G IP +L     
Sbjct: 274 GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL----T 329

Query: 193 NLPKFNASSFEGNKDLYGYPLPPMKSKGLSVL 224
           +LP+        NK     P    K   L+VL
Sbjct: 330 SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVL 361

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 68.3 bits (167), Expect = 4e-13
 Identities = 43/128 (33%), Positives = 64/128 (50%)

Query: 57  NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQ 116
           N     +P +  N   +  L+L +  L G I   L    +L+ + L  N L+G IP ++ 
Sbjct: 174 NVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG 233

Query: 117 YLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSN 176
            L +L  L+L  N L G IP  L     L  + L+ N L+G IP  +  L +L + D+S+
Sbjct: 234 GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD 293

Query: 177 NKLSGPIP 184
           N LSG IP
Sbjct: 294 NSLSGEIP 301

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.5 bits (157), Expect = 1e-11
 Identities = 28/64 (43%), Positives = 43/64 (67%)

Query: 76  LSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEI 135
           ++L+  S++G+I P L + T+L+ LDLS N+  GSIP  L  L +L +LNL+ N L+G +
Sbjct: 447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Query: 136 PPQL 139
           P  L
Sbjct: 507 PAAL 510

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.8 bits (103), Expect = 4e-05
 Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 7/108 (6%)

Query: 77  SLTNLSLQG----SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA 132
           +L NL L       +   LSN +NL +LDLS N ++  +P +++ L  L  L+LS N + 
Sbjct: 164 NLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII 222

Query: 133 GEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
            E+   L+    L+ ++L +N L   +P+ +G L  L   D+SNN++S
Sbjct: 223 -ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS 268

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 39/111 (35%), Positives = 61/111 (54%), Gaps = 7/111 (6%)

Query: 77  SLTNLSLQG----SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA 132
           +L  L L      S+   L N  NL++LDLS N L+  +P  L  L NL  L+LS N+++
Sbjct: 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS 199

Query: 133 GEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPI 183
            ++PP++ L + L  +DL +N +  ++   L  L  LS  ++SNNKL    
Sbjct: 200 -DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLP 248

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 6e-04
 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 72  RIYKLSLTNLSLQGSISP-YLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANR 130
            +  L L+N  L   I         NL+ LDLS N LT   P     L +L  L+LS N 
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 131 L 131
           L
Sbjct: 60  L 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	265
PLN03150	623	hypothetical protein; Provisional	99.9
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.87
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.86
PLN03150	623	hypothetical protein; Provisional	99.64
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.58
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.54
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.46
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.45
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.36
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.35
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.3
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.29
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.27
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.25
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.23
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.18
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.04
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.04
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.03
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.01
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.01
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.95
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.95
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.94
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.94
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.93
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.91
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.88
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.88
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.85
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.84
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.71
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.69
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.62
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.61
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.32
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.3
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.22
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.16
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.14
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.12
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.07
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.04
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.02
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.01
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	97.89
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.86
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.69
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.66
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.58
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.32
PRK15386	426	type III secretion protein GogB; Provisional	97.16
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.09
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.02
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.01
PRK15386	426	type III secretion protein GogB; Provisional	96.98
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.73
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.4
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.39
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.24
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	96.08
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.06
KOG0473	326	consensus Leucine-rich repeat protein [Function un	96.01
KOG0473	326	consensus Leucine-rich repeat protein [Function un	95.81
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.64
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.62
PF02439	38	Adeno_E3_CR2: Adenovirus E3 region protein CR2; In	95.5
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.5
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.08
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	94.8
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	94.43
PF02009	299	Rifin_STEVOR: Rifin/stevor family; InterPro: IPR00	93.58
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	93.44
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	92.94
smart00370	26	LRR Leucine-rich repeats, outliers.	92.18
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.18
PF14575	75	EphA2_TM: Ephrin type-A receptor 2 transmembrane d	91.98
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.52
smart00370	26	LRR Leucine-rich repeats, outliers.	91.52
PF05454	290	DAG1: Dystroglycan (Dystrophin-associated glycopro	91.48
PTZ00382	96	Variant-specific surface protein (VSP); Provisiona	91.27
PF07213	79	DAP10: DAP10 membrane protein; InterPro: IPR009861	91.24
PF08693	40	SKG6: Transmembrane alpha-helix domain; InterPro:	91.19
PF02439	38	Adeno_E3_CR2: Adenovirus E3 region protein CR2; In	91.17
PF05568	189	ASFV_J13L: African swine fever virus J13L protein;	90.44
PTZ00046	358	rifin; Provisional	89.05
TIGR01477	353	RIFIN variant surface antigen, rifin family. This	88.87
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	84.82
PF08374	221	Protocadherin: Protocadherin; InterPro: IPR013585	82.45
PF05393	94	Hum_adeno_E3A: Human adenovirus early E3A glycopro	81.69
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	81.48

>PLN03150 hypothetical protein; Provisional

Probab=99.90  E-value=2.9e-23  Score=195.36  Aligned_cols=203  Identities=33%  Similarity=0.523  Sum_probs=128.8

Q ss_pred             CCChhHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEE
Q 024632           21 SSDPNDEACLTHLSQSLKDPYKNLQNWTKSTFSNACNGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSL  100 (265)
Q Consensus        21 ~~~~~~~~~l~~~~~~l~~~~~~~~~w~~~~~~~~c~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L  100 (265)
                      .+.++|.++|..+|..+..+..  .+|.+    ++|......|.|+.|.....          .        ....++.|
T Consensus       368 ~t~~~~~~aL~~~k~~~~~~~~--~~W~g----~~C~p~~~~w~Gv~C~~~~~----------~--------~~~~v~~L  423 (623)
T PLN03150        368 KTLLEEVSALQTLKSSLGLPLR--FGWNG----DPCVPQQHPWSGADCQFDST----------K--------GKWFIDGL  423 (623)
T ss_pred             ccCchHHHHHHHHHHhcCCccc--CCCCC----CCCCCcccccccceeeccCC----------C--------CceEEEEE
Confidence            4566889999999999876542  47964    57754444699999953110          0        00124556


Q ss_pred             ECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCC
Q 024632          101 DLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS  180 (265)
Q Consensus       101 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~  180 (265)
                      +|++|.+.|.+|..+..+++|+.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|+.++.+++|+.|++++|+++
T Consensus       424 ~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~  503 (623)
T PLN03150        424 GLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS  503 (623)
T ss_pred             ECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccc
Confidence            66666666666666666777777777777777777777777777777777777777777777777777888888888888


Q ss_pred             CCCChhhhccCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024632          181 GPIPASLGNRSGNLPKFNASSFEGNKDLYGYPL-PPMKSKGLSVLAIVGIGLGSGFASLVISFTGVCIWLKV  251 (265)
Q Consensus       181 g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  251 (265)
                      |.+|..+...   ...+..+++.+|+.+|+.|. +.|. .......+++++++++++++++++..+++|+||
T Consensus       504 g~iP~~l~~~---~~~~~~l~~~~N~~lc~~p~l~~C~-~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~r  571 (623)
T PLN03150        504 GRVPAALGGR---LLHRASFNFTDNAGLCGIPGLRACG-PHLSVGAKIGIAFGVSVAFLFLVICAMCWWKRR  571 (623)
T ss_pred             ccCChHHhhc---cccCceEEecCCccccCCCCCCCCc-ccCCCceEEEEEhHHHHHHHHHHHHHhhheeeh
Confidence            7888776652   23345667889999998753 3332 222333344444444333333333334444444

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.87  E-value=3.1e-21  Score=190.96  Aligned_cols=175  Identities=33%  Similarity=0.590  Sum_probs=125.5

Q ss_pred             CCCCChhHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeec-CCCeEEEEeeCCCccccCCccCcCCCCC
Q 024632           19 LCSSDPNDEACLTHLSQSLKDPYKNLQNWTKSTFSNACNGFTSYLPGATCN-NGRIYKLSLTNLSLQGSISPYLSNCTNL   97 (265)
Q Consensus        19 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~w~~~~~~~~c~~~~~~~~~~~~~-~~~l~~L~L~~n~l~~~~p~~l~~l~~L   97 (265)
                      .+...++|.++|.+||+.+.+|.....+|+..  .++|.     |.|+.|. ..+++.|++++|.+++.++..+..+++|
T Consensus        23 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~--~~~c~-----w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L   95 (968)
T PLN00113         23 FSMLHAEELELLLSFKSSINDPLKYLSNWNSS--ADVCL-----WQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYI   95 (968)
T ss_pred             ccCCCHHHHHHHHHHHHhCCCCcccCCCCCCC--CCCCc-----CcceecCCCCcEEEEEecCCCccccCChHHhCCCCC
Confidence            34446789999999999998887788999753  36775     9999996 5789999999999998888888899999


Q ss_pred             CEEECcCCCCCCCCCCCcc-cCcccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEccc
Q 024632           98 QSLDLSSNALTGSIPADLQ-YLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSN  176 (265)
Q Consensus        98 ~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~  176 (265)
                      +.|++++|++++.+|..+. .+++|++|++++|.+++.+|.  +.+++|++|++++|.+++.+|..++.+++|++|++++
T Consensus        96 ~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~  173 (968)
T PLN00113         96 QTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGG  173 (968)
T ss_pred             CEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECcc
Confidence            9999999999888887654 677777777777777665553  2355566666666666555555555555666666666


Q ss_pred             CCCCCCCChhhhccCCCCCCCCCCCCCCCC
Q 024632          177 NKLSGPIPASLGNRSGNLPKFNASSFEGNK  206 (265)
Q Consensus       177 N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~  206 (265)
                      |.+.+.+|..+.+    ++.|+.+++++|.
T Consensus       174 n~l~~~~p~~~~~----l~~L~~L~L~~n~  199 (968)
T PLN00113        174 NVLVGKIPNSLTN----LTSLEFLTLASNQ  199 (968)
T ss_pred             CcccccCChhhhh----CcCCCeeeccCCC
Confidence            6555555555544    4444445554443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.86  E-value=1.6e-21  Score=192.98  Aligned_cols=137  Identities=36%  Similarity=0.594  Sum_probs=101.9

Q ss_pred             CCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEc
Q 024632           71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL  150 (265)
Q Consensus        71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  150 (265)
                      ++|+.|++++|++++.+|..+..+++|+.|++++|.+.+.+|+.+..+++|++|++++|.+++.+|..+..+++|+.|++
T Consensus       475 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  554 (968)
T PLN00113        475 KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDL  554 (968)
T ss_pred             ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEEC
Confidence            55667777777777677777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             cCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCCCCC
Q 024632          151 HDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYP  212 (265)
Q Consensus       151 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~~~  212 (265)
                      ++|+++|.+|..+..+++|+.+++++|+++|.+|..     +.+..+....+.||+.+|+.+
T Consensus       555 s~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-----~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        555 SQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-----GAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             CCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-----chhcccChhhhcCCccccCCc
Confidence            777777777777777777777777777777777753     224556677889999999854

>PLN03150 hypothetical protein; Provisional

Probab=99.64  E-value=1.6e-15  Score=143.05  Aligned_cols=111  Identities=34%  Similarity=0.515  Sum_probs=103.2

Q ss_pred             CeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEcc
Q 024632           72 RIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLH  151 (265)
Q Consensus        72 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  151 (265)
                      .++.|+|++|.+.|.+|..+..+++|+.|+|++|.+.|.+|..+..+++|+.|+|++|.++|.+|+.++++++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCcccCChhccCC-CCCCEEEcccCCCCCC
Q 024632          152 DNLLTGQIPQQLGLL-VRLSAFDVSNNKLSGP  182 (265)
Q Consensus       152 ~N~l~~~~p~~~~~l-~~L~~L~l~~N~l~g~  182 (265)
                      +|+++|.+|..++.+ .++..+++.+|...+.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~  530 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCG  530 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccC
Confidence            999999999988764 4677899999876543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.58  E-value=6.3e-17  Score=124.90  Aligned_cols=136  Identities=24%  Similarity=0.436  Sum_probs=104.9

Q ss_pred             CCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCC-CCCchHhhh
Q 024632           63 LPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA-GEIPPQLTL  141 (265)
Q Consensus        63 ~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~~~~  141 (265)
                      .|..+.++.+++.|++++|+++ .+|..++.++.|+.|++..|++. .+|..|+.++.|+.|||++|.+. ..+|..|..
T Consensus        48 vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~  125 (264)
T KOG0617|consen   48 VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFY  125 (264)
T ss_pred             cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhH
Confidence            4555556778888888888887 67777888888888888888877 77888888888888888887774 356777777


Q ss_pred             CCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCC
Q 024632          142 CAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK  206 (265)
Q Consensus       142 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~  206 (265)
                      +..|+.|++++|.|. .+|..++.+++|+.|.+..|.+- .+|..++.    +..+..+.+.||.
T Consensus       126 m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~----lt~lrelhiqgnr  184 (264)
T KOG0617|consen  126 MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGD----LTRLRELHIQGNR  184 (264)
T ss_pred             HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHH----HHHHHHHhcccce
Confidence            777788888888887 77777888888888888888776 67887777    6667777777775

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.54  E-value=1.2e-16  Score=123.43  Aligned_cols=137  Identities=29%  Similarity=0.490  Sum_probs=124.4

Q ss_pred             CCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhC
Q 024632           63 LPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLC  142 (265)
Q Consensus        63 ~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l  142 (265)
                      .++.+ ++++++.|.|++|.++ .+|+.+..+.+|+.|++++|+++ .+|..+..+++|+.|++.-|++. .+|..|+.+
T Consensus        26 ~~gLf-~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~  101 (264)
T KOG0617|consen   26 LPGLF-NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSF  101 (264)
T ss_pred             ccccc-chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCC
Confidence            44444 5788899999999999 78889999999999999999999 89999999999999999999998 899999999


Q ss_pred             CcCCEEEccCccCc-ccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCC
Q 024632          143 AYLNVIDLHDNLLT-GQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDL  208 (265)
Q Consensus       143 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~  208 (265)
                      +.|+.||+++|++. ..+|..|..+..|+.|+++.|.|. .+|..+++    +.+++.+.+.+|..+
T Consensus       102 p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~----lt~lqil~lrdndll  163 (264)
T KOG0617|consen  102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGK----LTNLQILSLRDNDLL  163 (264)
T ss_pred             chhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhh----hcceeEEeeccCchh
Confidence            99999999999986 368999999999999999999998 88999888    888888889888754

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.46  E-value=6.8e-15  Score=132.09  Aligned_cols=140  Identities=24%  Similarity=0.250  Sum_probs=77.5

Q ss_pred             CceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCC
Q 024632           64 PGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCA  143 (265)
Q Consensus        64 ~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  143 (265)
                      .|+|..+.++++|+|+.|+++..-...+.+++.|+.|++|+|.|...-++.+....+|++|+|++|+++...++++..+.
T Consensus       262 DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~  341 (873)
T KOG4194|consen  262 DGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS  341 (873)
T ss_pred             CcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHH
Confidence            45555566666666666666644444556666666666666666655555566666666666666666644444554444


Q ss_pred             cC------------------------CEEEccCccCcccCCh---hccCCCCCCEEEcccCCCCCCCChhhhccCCCCCC
Q 024632          144 YL------------------------NVIDLHDNLLTGQIPQ---QLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPK  196 (265)
Q Consensus       144 ~L------------------------~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~  196 (265)
                      .|                        ++|||++|.+++.+.+   .|..+++|+.|++.+|++...--.+|.+    ++.
T Consensus       342 ~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsg----l~~  417 (873)
T KOG4194|consen  342 QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSG----LEA  417 (873)
T ss_pred             HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhcc----Ccc
Confidence            44                        4445555544443322   2344555555555555554222223333    666


Q ss_pred             CCCCCCCCCCC
Q 024632          197 FNASSFEGNKD  207 (265)
Q Consensus       197 l~~~~~~~N~~  207 (265)
                      |+.+++.+|+.
T Consensus       418 LE~LdL~~Nai  428 (873)
T KOG4194|consen  418 LEHLDLGDNAI  428 (873)
T ss_pred             cceecCCCCcc
Confidence            77777777763

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.45  E-value=7.9e-15  Score=131.66  Aligned_cols=145  Identities=21%  Similarity=0.208  Sum_probs=110.6

Q ss_pred             CceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCccc------------------------Cc
Q 024632           64 PGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQY------------------------LV  119 (265)
Q Consensus        64 ~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~------------------------l~  119 (265)
                      .|..-+++.|+.|+|++|.|...-++.+...+.|++|||++|+++...+..|..                        +.
T Consensus       286 ~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~ls  365 (873)
T KOG4194|consen  286 EGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLS  365 (873)
T ss_pred             cccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhh
Confidence            344446777888888888887666777777888888888888877443444433                        45


Q ss_pred             ccceeccccccCCCCCc---hHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCC
Q 024632          120 NLAVLNLSANRLAGEIP---PQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPK  196 (265)
Q Consensus       120 ~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~  196 (265)
                      +|+.|||++|.+++.+-   ..|.++++|+.|++.+|++...--..|..+..|++|||.+|.+...-|.+|..    + +
T Consensus       366 sL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~----m-~  440 (873)
T KOG4194|consen  366 SLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEP----M-E  440 (873)
T ss_pred             hhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccccccc----c-h
Confidence            56666666666665443   24677999999999999999444467899999999999999999888888877    5 7


Q ss_pred             CCCCCCCCCCCCCCCCC
Q 024632          197 FNASSFEGNKDLYGYPL  213 (265)
Q Consensus       197 l~~~~~~~N~~~c~~~~  213 (265)
                      |+.+.+....++|+|.+
T Consensus       441 Lk~Lv~nSssflCDCql  457 (873)
T KOG4194|consen  441 LKELVMNSSSFLCDCQL  457 (873)
T ss_pred             hhhhhhcccceEEeccH
Confidence            78888888889999865

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.36  E-value=1.1e-13  Score=119.44  Aligned_cols=125  Identities=32%  Similarity=0.435  Sum_probs=72.9

Q ss_pred             EEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCcc
Q 024632           75 KLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNL  154 (265)
Q Consensus        75 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  154 (265)
                      .+.+++|.+. .+|..++.+++|..|+|++|-+. .+|..++.+..||.||++.|+|. .+|..+..+..++++-.++|+
T Consensus       416 ~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nq  492 (565)
T KOG0472|consen  416 DLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQ  492 (565)
T ss_pred             HHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcccc
Confidence            3444555444 55666666666666666666665 56666666666666666666665 556555555555555555566


Q ss_pred             CcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCC
Q 024632          155 LTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD  207 (265)
Q Consensus       155 l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~  207 (265)
                      +...-|+.+.++.+|..||+.+|.+. .+|+.+++    +.++.++.+.|||+
T Consensus       493 i~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgn----mtnL~hLeL~gNpf  540 (565)
T KOG0472|consen  493 IGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGN----MTNLRHLELDGNPF  540 (565)
T ss_pred             ccccChHHhhhhhhcceeccCCCchh-hCChhhcc----ccceeEEEecCCcc
Confidence            65333444566666666666666665 55665555    55555666666654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.35  E-value=2.1e-13  Score=123.75  Aligned_cols=136  Identities=31%  Similarity=0.458  Sum_probs=109.2

Q ss_pred             CCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCC-cccCcccceeccccccCCCCCchHhhh
Q 024632           63 LPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPAD-LQYLVNLAVLNLSANRLAGEIPPQLTL  141 (265)
Q Consensus        63 ~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~~~~  141 (265)
                      +|..+-.+..|+.|||++|+++ .+|..+..-.++-.|+||+|+|. .+|.. +-+++.|-+||||+|++. .+|+.+..
T Consensus        95 iP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RR  171 (1255)
T KOG0444|consen   95 IPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRR  171 (1255)
T ss_pred             CCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHH
Confidence            5666667889999999999998 78888888899999999999998 67755 567888899999999998 77888888


Q ss_pred             CCcCCEEEccCccCcc-------------------------cCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCC
Q 024632          142 CAYLNVIDLHDNLLTG-------------------------QIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPK  196 (265)
Q Consensus       142 l~~L~~L~Ls~N~l~~-------------------------~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~  196 (265)
                      +..|++|+|++|.+..                         .+|..+..+.+|..+|+|.|.+. .+|+.+.+    +++
T Consensus       172 L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~----l~~  246 (1255)
T KOG0444|consen  172 LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYK----LRN  246 (1255)
T ss_pred             HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhh----hhh
Confidence            8888888888885431                         35666677777888888888887 77887776    666


Q ss_pred             CCCCCCCCCC
Q 024632          197 FNASSFEGNK  206 (265)
Q Consensus       197 l~~~~~~~N~  206 (265)
                      |..+++++|.
T Consensus       247 LrrLNLS~N~  256 (1255)
T KOG0444|consen  247 LRRLNLSGNK  256 (1255)
T ss_pred             hheeccCcCc
Confidence            6667777765

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.30  E-value=1.6e-13  Score=118.58  Aligned_cols=117  Identities=28%  Similarity=0.377  Sum_probs=101.3

Q ss_pred             CCCCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhh
Q 024632           61 SYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLT  140 (265)
Q Consensus        61 ~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~  140 (265)
                      ++.|...|.++++..|+|++|-+. .+|.+++.+..|+.||+++|+|. .+|+.+..+..++.+-.++|++....|+.++
T Consensus       425 sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~  502 (565)
T KOG0472|consen  425 SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLK  502 (565)
T ss_pred             ccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhh
Confidence            334556678889999999999888 78999999999999999999998 8888877777777777788999866666699


Q ss_pred             hCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCC
Q 024632          141 LCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS  180 (265)
Q Consensus       141 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~  180 (265)
                      +|.+|.+||+.+|.+. .+|..++++++|++|++.+|+|+
T Consensus       503 nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  503 NMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            9999999999999999 88889999999999999999998

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.29  E-value=3.7e-13  Score=115.95  Aligned_cols=52  Identities=27%  Similarity=0.267  Sum_probs=39.0

Q ss_pred             CCCCCCCCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcC-CCCC
Q 024632           57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSS-NALT  108 (265)
Q Consensus        57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~-N~l~  108 (265)
                      |.+....++.|..+++|+.|||++|.|+..-|+.|.+++++..|.+.+ |+|+
T Consensus        77 N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~  129 (498)
T KOG4237|consen   77 NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT  129 (498)
T ss_pred             CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence            556666678888899999999999998866677777777766655444 6655

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.27  E-value=3.2e-13  Score=122.48  Aligned_cols=142  Identities=26%  Similarity=0.382  Sum_probs=86.3

Q ss_pred             CCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhC
Q 024632           63 LPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLC  142 (265)
Q Consensus        63 ~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l  142 (265)
                      +|..+-++.+|..+|++.|.+. .+|+.+.++++|+.|+||+|.++ .+.-..+...+|++|++|+|+++ .+|+.+.++
T Consensus       214 ~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL  290 (1255)
T KOG0444|consen  214 IPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKL  290 (1255)
T ss_pred             CCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhh
Confidence            5555556666666677766666 56666666666666666666666 44444455556666666666665 555555555


Q ss_pred             CcCCEEEccCccCcc-cCChhccCCCCC-----------------------CEEEcccCCCCCCCChhhhccCCCCCCCC
Q 024632          143 AYLNVIDLHDNLLTG-QIPQQLGLLVRL-----------------------SAFDVSNNKLSGPIPASLGNRSGNLPKFN  198 (265)
Q Consensus       143 ~~L~~L~Ls~N~l~~-~~p~~~~~l~~L-----------------------~~L~l~~N~l~g~~p~~~~~~~~~l~~l~  198 (265)
                      +.|+.|++.+|+++- -+|+.++.+.+|                       +.|.|+.|++- .+|+.+.-    ++.++
T Consensus       291 ~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLi-TLPeaIHl----L~~l~  365 (1255)
T KOG0444|consen  291 TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHL----LPDLK  365 (1255)
T ss_pred             HHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccccccee-echhhhhh----cCCcc
Confidence            555555555555431 244445555444                       45555555544 44554443    77888


Q ss_pred             CCCCCCCCCCCCCC
Q 024632          199 ASSFEGNKDLYGYP  212 (265)
Q Consensus       199 ~~~~~~N~~~c~~~  212 (265)
                      .+++..||.+--+|
T Consensus       366 vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  366 VLDLRENPNLVMPP  379 (1255)
T ss_pred             eeeccCCcCccCCC
Confidence            99999999876443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.25  E-value=4.1e-13  Score=120.36  Aligned_cols=133  Identities=30%  Similarity=0.461  Sum_probs=108.9

Q ss_pred             CCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhC
Q 024632           63 LPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLC  142 (265)
Q Consensus        63 ~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l  142 (265)
                      .|...|++..++++||+.|+++ .+|..+..++ |+.|-+++|+++ .+|+.++.+.+|..||.+.|.+. .+|..++.+
T Consensus       113 ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l  188 (722)
T KOG0532|consen  113 IPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYL  188 (722)
T ss_pred             cchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhH
Confidence            6777778888888888888888 7788777776 788888888888 88888888888888888888888 778888888


Q ss_pred             CcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCC
Q 024632          143 AYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK  206 (265)
Q Consensus       143 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~  206 (265)
                      .+|+.|++..|++. .+|.++..++ |..||++.|+++ .+|..|.+    |..|..+.+++||
T Consensus       189 ~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~----m~~Lq~l~LenNP  245 (722)
T KOG0532|consen  189 TSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRK----MRHLQVLQLENNP  245 (722)
T ss_pred             HHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhh----hhhheeeeeccCC
Confidence            88888888888887 6777777554 778888888887 78888877    7778888888887

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.23  E-value=6.6e-13  Score=124.73  Aligned_cols=129  Identities=35%  Similarity=0.491  Sum_probs=107.6

Q ss_pred             CCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCC-cccCcccceeccccccCCCCCchHhhhCCcCCEE
Q 024632           70 NGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPAD-LQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVI  148 (265)
Q Consensus        70 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  148 (265)
                      ...|+.|++.+|.++...-+.+.+..+|+.|+|++|++. .+|.. +.++..|+.|+||+|+++ .+|..+..++.|++|
T Consensus       358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL  435 (1081)
T KOG0618|consen  358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTL  435 (1081)
T ss_pred             hHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHH
Confidence            456888999999998777677888999999999999998 66654 778999999999999999 888999999999999


Q ss_pred             EccCccCcccCChhccCCCCCCEEEcccCCCCCC-CChhhhccCCCCCCCCCCCCCCCCC
Q 024632          149 DLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGP-IPASLGNRSGNLPKFNASSFEGNKD  207 (265)
Q Consensus       149 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~-~p~~~~~~~~~l~~l~~~~~~~N~~  207 (265)
                      ...+|++. ..| ++..++.|+.+|++.|+++.. +|...-     -++|+.++++||++
T Consensus       436 ~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-----~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  436 RAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-----SPNLKYLDLSGNTR  488 (1081)
T ss_pred             hhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-----CcccceeeccCCcc
Confidence            99999998 788 788999999999999998743 333211     25788888999885

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.18  E-value=2.2e-11  Score=96.48  Aligned_cols=127  Identities=24%  Similarity=0.260  Sum_probs=50.1

Q ss_pred             CCCeEEEEeeCCCccccCCccCc-CCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHh-hhCCcCCE
Q 024632           70 NGRIYKLSLTNLSLQGSISPYLS-NCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQL-TLCAYLNV  147 (265)
Q Consensus        70 ~~~l~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~  147 (265)
                      ..++++|+|.+|.|+ .+. .++ .+.+|+.|++++|.++ .++ .+..++.|++|++++|+++ .+.+.+ ..+++|++
T Consensus        18 ~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   18 PVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQE   92 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred             ccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCE
Confidence            346789999999998 443 465 5789999999999999 554 5788999999999999999 555555 46899999


Q ss_pred             EEccCccCcccC-ChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCC
Q 024632          148 IDLHDNLLTGQI-PQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSF  202 (265)
Q Consensus       148 L~Ls~N~l~~~~-p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~  202 (265)
                      |++++|+|...- -..+..+++|+.|++.+|+++. .+..-......+|+++.+|.
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETT
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCC
Confidence            999999997421 1456788999999999999973 34321111122666666654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.04  E-value=2e-11  Score=102.29  Aligned_cols=129  Identities=25%  Similarity=0.329  Sum_probs=101.3

Q ss_pred             CCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEE
Q 024632           70 NGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVID  149 (265)
Q Consensus        70 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  149 (265)
                      .+.|+++||++|.|+ .+..+..-.+.++.|++|+|.+. .+. .+..+++|+.||||+|.++ .+-..-.++.+.++|.
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK  358 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence            467889999999998 67788888899999999999988 444 4888999999999999988 5666667788899999


Q ss_pred             ccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCC
Q 024632          150 LHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD  207 (265)
Q Consensus       150 Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~  207 (265)
                      |+.|.+. .+ +.++.+-+|..||+++|++.. +- .... .+++|.++.+.+.+||.
T Consensus       359 La~N~iE-~L-SGL~KLYSLvnLDl~~N~Ie~-ld-eV~~-IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  359 LAQNKIE-TL-SGLRKLYSLVNLDLSSNQIEE-LD-EVNH-IGNLPCLETLRLTGNPL  411 (490)
T ss_pred             hhhhhHh-hh-hhhHhhhhheeccccccchhh-HH-Hhcc-cccccHHHHHhhcCCCc
Confidence            9999887 33 346777888999999998862 21 1111 34588899999999984

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.04  E-value=2.1e-11  Score=105.34  Aligned_cols=139  Identities=19%  Similarity=0.186  Sum_probs=117.7

Q ss_pred             CeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceecccc-ccCCCCCchHhhhCCcCCEEEc
Q 024632           72 RIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSA-NRLAGEIPPQLTLCAYLNVIDL  150 (265)
Q Consensus        72 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L  150 (265)
                      ..+.|+|..|+|+...|..|+.+++|+.||||+|+|+..-|..|..+.++..|-+-+ |+|+......|+++.+|+.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            457899999999966677899999999999999999977788899999888776666 9999655667899999999999


Q ss_pred             cCccCcccCChhccCCCCCCEEEcccCCCCCCCCh-hhhccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 024632          151 HDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPA-SLGNRSGNLPKFNASSFEGNKDLYGYPLPP  215 (265)
Q Consensus       151 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~-~~~~~~~~l~~l~~~~~~~N~~~c~~~~~~  215 (265)
                      .-|++.-...+.|..+++|..|.+-.|.+. .++. .+..    +..++.+.+..|++.|.|.++.
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~----l~~i~tlhlA~np~icdCnL~w  208 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQG----LAAIKTLHLAQNPFICDCNLPW  208 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccc----hhccchHhhhcCccccccccch
Confidence            999999777788999999999999999987 5554 5555    6777888999999999886654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.03  E-value=2.9e-10  Score=108.80  Aligned_cols=104  Identities=27%  Similarity=0.472  Sum_probs=57.7

Q ss_pred             CeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcc-------------------cCcccceeccccccCC
Q 024632           72 RIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQ-------------------YLVNLAVLNLSANRLA  132 (265)
Q Consensus        72 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-------------------~l~~L~~L~Ls~N~l~  132 (265)
                      +|++|++++|.++ .+|..+.  ++|+.|++++|+++ .+|..+.                   ..++|+.|++++|.++
T Consensus       263 ~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt  338 (754)
T PRK15370        263 ALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALT  338 (754)
T ss_pred             CCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccchhhHHHHHhcCCccccCCccccccceeccccCCccc
Confidence            4555666666555 3444332  34555555555554 2222111                   1245677777777776


Q ss_pred             CCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChh
Q 024632          133 GEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPAS  186 (265)
Q Consensus       133 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~  186 (265)
                       .+|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|+++ .+|..
T Consensus       339 -~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~  385 (754)
T PRK15370        339 -SLPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPEN  385 (754)
T ss_pred             -cCChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHh
Confidence             3555443  56777777777776 4565442  46677777777666 44543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.01  E-value=2.2e-10  Score=90.82  Aligned_cols=109  Identities=33%  Similarity=0.454  Sum_probs=40.2

Q ss_pred             CcCCCCCCEEECcCCCCCCCCCCCcc-cCcccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhc-cCCCC
Q 024632           91 LSNCTNLQSLDLSSNALTGSIPADLQ-YLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQL-GLLVR  168 (265)
Q Consensus        91 l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~  168 (265)
                      +.+...+++|+|++|.++ .+. .++ .+.+|+.|++++|.++ .++ .+..++.|++|++++|+++ .+++.+ ..+++
T Consensus        15 ~~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~   89 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPN   89 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred             cccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCc
Confidence            445567899999999998 553 565 5889999999999998 453 5888999999999999999 555545 46899


Q ss_pred             CCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCC
Q 024632          169 LSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD  207 (265)
Q Consensus       169 L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~  207 (265)
                      |+.|++++|++...  ..+..+ +.++.|+.+++.|||.
T Consensus        90 L~~L~L~~N~I~~l--~~l~~L-~~l~~L~~L~L~~NPv  125 (175)
T PF14580_consen   90 LQELYLSNNKISDL--NELEPL-SSLPKLRVLSLEGNPV  125 (175)
T ss_dssp             --EEE-TTS---SC--CCCGGG-GG-TT--EEE-TT-GG
T ss_pred             CCEEECcCCcCCCh--HHhHHH-HcCCCcceeeccCCcc
Confidence            99999999999742  223332 2388999999999984

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.01  E-value=5.4e-11  Score=103.34  Aligned_cols=139  Identities=23%  Similarity=0.290  Sum_probs=87.7

Q ss_pred             ecCCCeEEEEeeCCCccccCCccCcCCCC---CCEEECcCCCCCC----CCCCCcccC-cccceeccccccCCCC----C
Q 024632           68 CNNGRIYKLSLTNLSLQGSISPYLSNCTN---LQSLDLSSNALTG----SIPADLQYL-VNLAVLNLSANRLAGE----I  135 (265)
Q Consensus        68 ~~~~~l~~L~L~~n~l~~~~p~~l~~l~~---L~~L~Ls~N~l~~----~~p~~l~~l-~~L~~L~Ls~N~l~~~----~  135 (265)
                      ..+++++.|++++|.+.+..+..+..+..   |++|++++|.+++    .+...+..+ ++|+.|++++|.+++.    +
T Consensus        78 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~  157 (319)
T cd00116          78 TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL  157 (319)
T ss_pred             HhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence            34668888888888876544444444444   8888888887763    122234455 7778888888887742    2


Q ss_pred             chHhhhCCcCCEEEccCccCccc----CChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCC
Q 024632          136 PPQLTLCAYLNVIDLHDNLLTGQ----IPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK  206 (265)
Q Consensus       136 p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~  206 (265)
                      +..+..+.+|++|++++|.+++.    ++..+..+++|+.|++++|.+++.-...+......++.++.+++++|+
T Consensus       158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~  232 (319)
T cd00116         158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN  232 (319)
T ss_pred             HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence            33455566788888888877742    333445556788888888877644434343333346677777777765

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.95  E-value=1.8e-10  Score=103.64  Aligned_cols=120  Identities=28%  Similarity=0.463  Sum_probs=106.7

Q ss_pred             CCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhC
Q 024632           63 LPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLC  142 (265)
Q Consensus        63 ~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l  142 (265)
                      .|.-.|.++ |+.|-+++|+++ .+|..++.+..|..||.+.|.+. .+|..++.+.+|+.|.+..|++. .+|..+..+
T Consensus       136 lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L  211 (722)
T KOG0532|consen  136 LPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL  211 (722)
T ss_pred             CChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC
Confidence            566667665 788999999999 89999999999999999999998 89999999999999999999999 788888855


Q ss_pred             CcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhc
Q 024632          143 AYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGN  189 (265)
Q Consensus       143 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~  189 (265)
                      + |..||++.|+++ .+|-.|..|+.|++|.|.+|.+. ..|..+..
T Consensus       212 p-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~  255 (722)
T KOG0532|consen  212 P-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICE  255 (722)
T ss_pred             c-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHh
Confidence            4 899999999999 89999999999999999999998 55666543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.95  E-value=1.4e-10  Score=109.37  Aligned_cols=110  Identities=31%  Similarity=0.407  Sum_probs=94.4

Q ss_pred             CCceeecCCCeEEEEeeCCCccccCCc-cCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhh
Q 024632           63 LPGATCNNGRIYKLSLTNLSLQGSISP-YLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTL  141 (265)
Q Consensus        63 ~~~~~~~~~~l~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~  141 (265)
                      ||- +-+.++|+.|+|++|++. .+|. .+.++..|++|+||+|+++ .+|..+..+..|++|...+|++. .+| .+..
T Consensus       376 ~p~-l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~  450 (1081)
T KOG0618|consen  376 FPV-LVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQ  450 (1081)
T ss_pred             hhh-hccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhh
Confidence            543 345789999999999999 5554 5888999999999999999 89999999999999999999998 788 7889


Q ss_pred             CCcCCEEEccCccCccc-CChhccCCCCCCEEEcccCC
Q 024632          142 CAYLNVIDLHDNLLTGQ-IPQQLGLLVRLSAFDVSNNK  178 (265)
Q Consensus       142 l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~l~~N~  178 (265)
                      ++.|+.+|++.|+++.. +|... ..++|++||+++|.
T Consensus       451 l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  451 LPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNT  487 (1081)
T ss_pred             cCcceEEecccchhhhhhhhhhC-CCcccceeeccCCc
Confidence            99999999999999843 34332 23899999999997

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.94  E-value=1.1e-09  Score=104.64  Aligned_cols=123  Identities=28%  Similarity=0.340  Sum_probs=63.2

Q ss_pred             CCeEEEEeeCCCccccCCc---cCcC----------C----CCCCEEECcCCCCCCCCCCCccc----------------
Q 024632           71 GRIYKLSLTNLSLQGSISP---YLSN----------C----TNLQSLDLSSNALTGSIPADLQY----------------  117 (265)
Q Consensus        71 ~~l~~L~L~~n~l~~~~p~---~l~~----------l----~~L~~L~Ls~N~l~~~~p~~l~~----------------  117 (265)
                      ++|+.|++++|.+++ +|.   .+..          +    .+|+.|++++|+++ .+|.....                
T Consensus       302 ~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls-~LP~lp~~L~~L~Ls~N~L~~LP~  379 (788)
T PRK15387        302 PGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPA  379 (788)
T ss_pred             cccceeECCCCcccc-CCCCcccccccccccCccccccccccccceEecCCCccC-CCCCCCcccceehhhccccccCcc
Confidence            666677777776663 222   1111          1    25777777777777 44432211                


Q ss_pred             -CcccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCC
Q 024632          118 -LVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPK  196 (265)
Q Consensus       118 -l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~  196 (265)
                       ..+|+.|++++|.++ .+|..   .++|+.|++++|+++ .+|...   .+|+.|++++|+++ .+|..+.+    ++.
T Consensus       380 l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~----L~~  446 (788)
T PRK15387        380 LPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIH----LSS  446 (788)
T ss_pred             cccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhh----ccC
Confidence             123444444444444 23321   134555555555555 344321   23455556666655 55665555    566


Q ss_pred             CCCCCCCCCCCC
Q 024632          197 FNASSFEGNKDL  208 (265)
Q Consensus       197 l~~~~~~~N~~~  208 (265)
                      +..+++++|+..
T Consensus       447 L~~LdLs~N~Ls  458 (788)
T PRK15387        447 ETTVNLEGNPLS  458 (788)
T ss_pred             CCeEECCCCCCC
Confidence            677777777743

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.94  E-value=3.7e-10  Score=73.87  Aligned_cols=59  Identities=36%  Similarity=0.461  Sum_probs=30.7

Q ss_pred             ccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCC
Q 024632          120 NLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNK  178 (265)
Q Consensus       120 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~  178 (265)
                      +|++|++++|+++...+..|.++++|++|++++|.++...|..|..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            44555555555553333445555555555555555554444455555555555555554

...

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.93  E-value=2.5e-09  Score=102.50  Aligned_cols=102  Identities=35%  Similarity=0.527  Sum_probs=73.7

Q ss_pred             CCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEc
Q 024632           71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL  150 (265)
Q Consensus        71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  150 (265)
                      +.++.|++++|.++ .+|..+.  .+|++|++++|+++ .+|..+.  .+|+.|++++|.++ .+|..+.  .+|+.|++
T Consensus       199 ~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L  269 (754)
T PRK15370        199 EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDL  269 (754)
T ss_pred             cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence            46778888888887 5665543  47888888888887 5666543  46888888888887 6676654  47888888


Q ss_pred             cCccCcccCChhccCCCCCCEEEcccCCCCCCCCh
Q 024632          151 HDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPA  185 (265)
Q Consensus       151 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~  185 (265)
                      ++|+++ .+|..+.  ++|+.|++++|++++ +|.
T Consensus       270 s~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~  300 (754)
T PRK15370        270 FHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPA  300 (754)
T ss_pred             cCCccC-ccccccC--CCCcEEECCCCcccc-Ccc
Confidence            888888 5676553  478888888888873 444

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.91  E-value=1.3e-10  Score=97.50  Aligned_cols=136  Identities=21%  Similarity=0.270  Sum_probs=102.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccce
Q 024632           44 LQNWTKSTFSNACNGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAV  123 (265)
Q Consensus        44 ~~~w~~~~~~~~c~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  123 (265)
                      ...|+..+.-|-..+....+.....-.+.++.|++++|++. .+. .+..+++|+.||||+|.++ .+...-..+.++++
T Consensus       280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKt  356 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKT  356 (490)
T ss_pred             cchHhhhhhccccccchhhhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEee
Confidence            45676543323222221223333334689999999999998 444 3889999999999999998 56655567899999


Q ss_pred             eccccccCCCCCchHhhhCCcCCEEEccCccCccc-CChhccCCCCCCEEEcccCCCCCCCCh
Q 024632          124 LNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQ-IPQQLGLLVRLSAFDVSNNKLSGPIPA  185 (265)
Q Consensus       124 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~g~~p~  185 (265)
                      |.|++|.+. .+ +++.++.+|..||+++|+|... --..++++|.|+++.+.+|++++ +|+
T Consensus       357 L~La~N~iE-~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~-~vd  416 (490)
T KOG1259|consen  357 LKLAQNKIE-TL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG-SVD  416 (490)
T ss_pred             eehhhhhHh-hh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc-cch
Confidence            999999997 33 5788899999999999999832 12468999999999999999984 554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.90  E-value=5.1e-10  Score=73.20  Aligned_cols=59  Identities=41%  Similarity=0.502  Sum_probs=27.8

Q ss_pred             CCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCcc
Q 024632           96 NLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNL  154 (265)
Q Consensus        96 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  154 (265)
                      +|++|++++|+++...+..|..+++|++|++++|.++...|..|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34444555554442222334445555555555555543333444555555555555554

...

>PLN03210 Resistant to P

Probab=98.88  E-value=7.3e-09  Score=104.61  Aligned_cols=128  Identities=17%  Similarity=0.300  Sum_probs=97.4

Q ss_pred             CCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEc
Q 024632           71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL  150 (265)
Q Consensus        71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  150 (265)
                      ++|+.|++++|...+.+|..++++++|+.|++++|..-+.+|..+ .+++|+.|++++|..-..+|..   ..+|+.|++
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~L  853 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNL  853 (1153)
T ss_pred             ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeEC
Confidence            578888888887777788888999999999998875444777765 6888999999987654455543   357889999


Q ss_pred             cCccCcccCChhccCCCCCCEEEccc-CCCCCCCChhhhccCCCCCCCCCCCCCCCCCC
Q 024632          151 HDNLLTGQIPQQLGLLVRLSAFDVSN-NKLSGPIPASLGNRSGNLPKFNASSFEGNKDL  208 (265)
Q Consensus       151 s~N~l~~~~p~~~~~l~~L~~L~l~~-N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~  208 (265)
                      ++|.++ .+|..+..+++|+.|++++ |++. .+|..+..    ++.++.+++++++.+
T Consensus       854 s~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~----L~~L~~L~l~~C~~L  906 (1153)
T PLN03210        854 SRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISK----LKHLETVDFSDCGAL  906 (1153)
T ss_pred             CCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCccccc----ccCCCeeecCCCccc
Confidence            999998 7888889999999999988 4555 56665554    666666666665543

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=98.88  E-value=1e-08  Score=103.57  Aligned_cols=124  Identities=20%  Similarity=0.327  Sum_probs=69.1

Q ss_pred             eEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccC
Q 024632           73 IYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHD  152 (265)
Q Consensus        73 l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  152 (265)
                      |+.|.+.++.+. .+|..+ ...+|+.|++++|.+. .++..+..+++|+.|+|+++.....+|. +..+++|++|++++
T Consensus       591 Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~  666 (1153)
T PLN03210        591 LRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSD  666 (1153)
T ss_pred             cEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecC
Confidence            444444444444 344443 3456666666666665 5555566666666666666543334553 55566666666666


Q ss_pred             ccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCC
Q 024632          153 NLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGN  205 (265)
Q Consensus       153 N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N  205 (265)
                      |.....+|..++.+++|+.|++++|..-+.+|..+ +    ++.|+.+++++|
T Consensus       667 c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~----l~sL~~L~Lsgc  714 (1153)
T PLN03210        667 CSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-N----LKSLYRLNLSGC  714 (1153)
T ss_pred             CCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-C----CCCCCEEeCCCC
Confidence            65555666666666666666666654334555433 1    344444444444

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.85  E-value=2.6e-10  Score=99.02  Aligned_cols=141  Identities=23%  Similarity=0.182  Sum_probs=99.0

Q ss_pred             eecCCCeEEEEeeCCCccc------cCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcc---cceeccccccCCC----
Q 024632           67 TCNNGRIYKLSLTNLSLQG------SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVN---LAVLNLSANRLAG----  133 (265)
Q Consensus        67 ~~~~~~l~~L~L~~n~l~~------~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~---L~~L~Ls~N~l~~----  133 (265)
                      ....+++++++++++.+.+      .++..+..+++|+.|++++|.+.+..+..+..+.+   |++|++++|.+++    
T Consensus        47 l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~  126 (319)
T cd00116          47 LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLR  126 (319)
T ss_pred             HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHH
Confidence            3356678899998887762      23445677889999999999987655555555555   9999999998873    


Q ss_pred             CCchHhhhC-CcCCEEEccCccCccc----CChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCC
Q 024632          134 EIPPQLTLC-AYLNVIDLHDNLLTGQ----IPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD  207 (265)
Q Consensus       134 ~~p~~~~~l-~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~  207 (265)
                      .+...+..+ ++|+.|++++|.+++.    ++..+..+++|+.|++++|.+++.....+.......+.++.+++++|..
T Consensus       127 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i  205 (319)
T cd00116         127 LLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL  205 (319)
T ss_pred             HHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc
Confidence            223345566 8899999999998843    3445667788999999999988532222221112256888889988863

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.84  E-value=3.3e-09  Score=101.49  Aligned_cols=108  Identities=28%  Similarity=0.326  Sum_probs=85.0

Q ss_pred             CeEEEEeeCCCccccCCccCcC-----------------CCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCC
Q 024632           72 RIYKLSLTNLSLQGSISPYLSN-----------------CTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGE  134 (265)
Q Consensus        72 ~l~~L~L~~n~l~~~~p~~l~~-----------------l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  134 (265)
                      +|++|+|++|++++ +|....+                 ..+|+.|++++|.++ .+|..   .++|+.|++++|.++ .
T Consensus       343 ~Lq~LdLS~N~Ls~-LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-s  416 (788)
T PRK15387        343 GLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-S  416 (788)
T ss_pred             ccceEecCCCccCC-CCCCCcccceehhhccccccCcccccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-C
Confidence            67788888888773 4432111                 135788888888888 56653   367999999999999 5


Q ss_pred             CchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhc
Q 024632          135 IPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGN  189 (265)
Q Consensus       135 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~  189 (265)
                      +|...   .+|+.|++++|+++ .+|..+..+++|+.+++++|++++..|..+..
T Consensus       417 IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~  467 (788)
T PRK15387        417 LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE  467 (788)
T ss_pred             CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence            77643   46888999999999 89999999999999999999999998887754

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.71  E-value=1e-08  Score=92.02  Aligned_cols=106  Identities=36%  Similarity=0.557  Sum_probs=85.3

Q ss_pred             CCCeEEEEeeCCCccccCCccCcCCC-CCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEE
Q 024632           70 NGRIYKLSLTNLSLQGSISPYLSNCT-NLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVI  148 (265)
Q Consensus        70 ~~~l~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  148 (265)
                      .+.++.|++.+|.++ .+++....+. +|+.|++++|.+. .+|..+..++.|+.|++++|+++ .+|...+..+.|+.|
T Consensus       115 ~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L  191 (394)
T COG4886         115 LTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNL  191 (394)
T ss_pred             ccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhe
Confidence            456888899999888 6777677774 8999999999988 77777788899999999999988 677766678888889


Q ss_pred             EccCccCcccCChhccCCCCCCEEEcccCCC
Q 024632          149 DLHDNLLTGQIPQQLGLLVRLSAFDVSNNKL  179 (265)
Q Consensus       149 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l  179 (265)
                      ++++|+++ .+|........|+.+.+++|+.
T Consensus       192 ~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~  221 (394)
T COG4886         192 DLSGNKIS-DLPPEIELLSALEELDLSNNSI  221 (394)
T ss_pred             eccCCccc-cCchhhhhhhhhhhhhhcCCcc
Confidence            99999888 7777666666688888888853

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.69  E-value=8.5e-09  Score=92.56  Aligned_cols=136  Identities=33%  Similarity=0.553  Sum_probs=91.3

Q ss_pred             CCceeecCC-CeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhh
Q 024632           63 LPGATCNNG-RIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTL  141 (265)
Q Consensus        63 ~~~~~~~~~-~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~  141 (265)
                      .+......+ +++.|++++|.+. .+|..+..+++|+.|++++|++. .+|.....++.|+.|++++|+++ .+|..+..
T Consensus       131 i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~  207 (394)
T COG4886         131 IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL  207 (394)
T ss_pred             Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhh
Confidence            444444453 8899999999888 66667888889999999999888 67766657788888888888888 66766555


Q ss_pred             CCcCCEEEccCccCcc----------------------cCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCC
Q 024632          142 CAYLNVIDLHDNLLTG----------------------QIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNA  199 (265)
Q Consensus       142 l~~L~~L~Ls~N~l~~----------------------~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~  199 (265)
                      ...|+++.+++|.+..                      .++..++.+++++.|++++|.++ .++. ++.    +..++.
T Consensus       208 ~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~----~~~l~~  281 (394)
T COG4886         208 LSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS-SISS-LGS----LTNLRE  281 (394)
T ss_pred             hhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccc-cccc-ccc----cCccCE
Confidence            5557777777663220                      12344455555666666666665 3333 333    556666


Q ss_pred             CCCCCCCC
Q 024632          200 SSFEGNKD  207 (265)
Q Consensus       200 ~~~~~N~~  207 (265)
                      +++++|..
T Consensus       282 L~~s~n~~  289 (394)
T COG4886         282 LDLSGNSL  289 (394)
T ss_pred             EeccCccc
Confidence            66766654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.62  E-value=2.8e-09  Score=79.79  Aligned_cols=111  Identities=25%  Similarity=0.402  Sum_probs=87.3

Q ss_pred             CeEEEEeeCCCccccCCc---cCcCCCCCCEEECcCCCCCCCCCCCccc-CcccceeccccccCCCCCchHhhhCCcCCE
Q 024632           72 RIYKLSLTNLSLQGSISP---YLSNCTNLQSLDLSSNALTGSIPADLQY-LVNLAVLNLSANRLAGEIPPQLTLCAYLNV  147 (265)
Q Consensus        72 ~l~~L~L~~n~l~~~~p~---~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  147 (265)
                      .+..++|+++.+- .+++   .+....+|+..+|++|.+. .+|+.|.. .+.++.+++++|.++ .+|..+..++.|+.
T Consensus        28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~  104 (177)
T KOG4579|consen   28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS  104 (177)
T ss_pred             Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence            3455677777665 3433   3455567777899999998 66666554 458899999999999 78888999999999


Q ss_pred             EEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhh
Q 024632          148 IDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASL  187 (265)
Q Consensus       148 L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~  187 (265)
                      +++++|.+. ..|..+..+.++..|+..+|... ++|-.+
T Consensus       105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl  142 (177)
T KOG4579|consen  105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDL  142 (177)
T ss_pred             cccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHH
Confidence            999999999 78888888999999999999887 677653

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.61  E-value=3.5e-10  Score=104.47  Aligned_cols=130  Identities=28%  Similarity=0.320  Sum_probs=99.9

Q ss_pred             CCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCch-HhhhCCcCCEEE
Q 024632           71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPP-QLTLCAYLNVID  149 (265)
Q Consensus        71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~  149 (265)
                      ..|.+.+.++|++. .+...+.-++.++.|+|++|++. ... .+..+++|++|||++|.++ .+|. +...+ .|+.|.
T Consensus       164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~  238 (1096)
T KOG1859|consen  164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLN  238 (1096)
T ss_pred             hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhc-cccccchhhh-hheeee
Confidence            35778888899888 67788888999999999999998 443 7889999999999999998 5554 23333 499999


Q ss_pred             ccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCCC
Q 024632          150 LHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYG  210 (265)
Q Consensus       150 Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~  210 (265)
                      +++|.++ .+ ..+.++.+|+.||++.|-+++.---.+-   ..+..|..+.+.|||..|.
T Consensus       239 lrnN~l~-tL-~gie~LksL~~LDlsyNll~~hseL~pL---wsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  239 LRNNALT-TL-RGIENLKSLYGLDLSYNLLSEHSELEPL---WSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             ecccHHH-hh-hhHHhhhhhhccchhHhhhhcchhhhHH---HHHHHHHHHhhcCCccccC
Confidence            9999998 33 3478899999999999998754211110   1144567788999997775

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.32  E-value=4.2e-07  Score=88.80  Aligned_cols=107  Identities=24%  Similarity=0.280  Sum_probs=88.4

Q ss_pred             CCeEEEEeeCCC--ccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEE
Q 024632           71 GRIYKLSLTNLS--LQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVI  148 (265)
Q Consensus        71 ~~l~~L~L~~n~--l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  148 (265)
                      +.+++|-+..|.  +.......|..++.|+.|||++|.--+.+|+.++.+.+|++|++++..++ .+|.+++++..|.+|
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL  623 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence            468888888886  44233444777999999999988766689999999999999999999998 899999999999999


Q ss_pred             EccCccCcccCChhccCCCCCCEEEcccCC
Q 024632          149 DLHDNLLTGQIPQQLGLLVRLSAFDVSNNK  178 (265)
Q Consensus       149 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~  178 (265)
                      |+.++.....+|.....+++|++|.+....
T Consensus       624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  624 NLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             ccccccccccccchhhhcccccEEEeeccc
Confidence            999888766677777779999999887654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.30  E-value=6.6e-08  Score=72.53  Aligned_cols=113  Identities=19%  Similarity=0.279  Sum_probs=88.9

Q ss_pred             cCCCeEEEEeeCCCccccCCccCc-CCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCE
Q 024632           69 NNGRIYKLSLTNLSLQGSISPYLS-NCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNV  147 (265)
Q Consensus        69 ~~~~l~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  147 (265)
                      ....++.++|++|.+. .+|+.|. ..+.++.|++++|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.++..
T Consensus        51 ~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~  127 (177)
T KOG4579|consen   51 KGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDM  127 (177)
T ss_pred             CCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHH
Confidence            4567889999999999 5665554 4568999999999999 89999999999999999999998 77888888999999


Q ss_pred             EEccCccCcccCChhccCCCCCCEEEcccCCCCCCCCh
Q 024632          148 IDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPA  185 (265)
Q Consensus       148 L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~  185 (265)
                      |+..+|.+. .+|-.+..-...-..+++++.+.+.-|.
T Consensus       128 Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~  164 (177)
T KOG4579|consen  128 LDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKK  164 (177)
T ss_pred             hcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcc
Confidence            999999998 7776543222333345566666655443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.22  E-value=1.4e-06  Score=52.77  Aligned_cols=36  Identities=36%  Similarity=0.596  Sum_probs=20.6

Q ss_pred             cCCEEEccCccCcccCChhccCCCCCCEEEcccCCCC
Q 024632          144 YLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS  180 (265)
Q Consensus       144 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~  180 (265)
                      +|++|++++|+|+ .+|..+.++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4566666666666 45555666666666666666665

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.16  E-value=1.6e-06  Score=52.49  Aligned_cols=36  Identities=33%  Similarity=0.655  Sum_probs=22.1

Q ss_pred             ccceeccccccCCCCCchHhhhCCcCCEEEccCccCc
Q 024632          120 NLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLT  156 (265)
Q Consensus       120 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  156 (265)
                      +|++|++++|+++ .+|..+.++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4666666666666 45555666666666666666666

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.14  E-value=1.6e-06  Score=84.77  Aligned_cols=127  Identities=24%  Similarity=0.286  Sum_probs=97.9

Q ss_pred             CCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCC--CCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCE
Q 024632           70 NGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNA--LTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNV  147 (265)
Q Consensus        70 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~--l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  147 (265)
                      ...++.+.+-+|.+. .++... ..+.|+.|-+..|.  +....++.|..++.|+.|||++|.=-+.+|..++.+-+|++
T Consensus       522 ~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry  599 (889)
T KOG4658|consen  522 WNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY  599 (889)
T ss_pred             hhheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence            356788888888876 444433 34478999999886  55233445788999999999998766799999999999999


Q ss_pred             EEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCC
Q 024632          148 IDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFE  203 (265)
Q Consensus       148 L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~  203 (265)
                      |++++..+. .+|..++++..|.+||+..+.....+|.....    +++|+.+.+.
T Consensus       600 L~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~----L~~Lr~L~l~  650 (889)
T KOG4658|consen  600 LDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLE----LQSLRVLRLP  650 (889)
T ss_pred             ccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhh----cccccEEEee
Confidence            999999999 99999999999999999988765455544443    5555554433

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.12  E-value=5.2e-07  Score=81.69  Aligned_cols=106  Identities=32%  Similarity=0.411  Sum_probs=52.1

Q ss_pred             cCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEE
Q 024632           69 NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVI  148 (265)
Q Consensus        69 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  148 (265)
                      .+++++.+++.+|.+. .+...+..+++|++|++++|.|+. +. .+..+..|+.|++++|.++ .+ ..+..+..|+.+
T Consensus        93 ~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~-i~-~l~~l~~L~~L~l~~N~i~-~~-~~~~~l~~L~~l  167 (414)
T KOG0531|consen   93 KLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITK-LE-GLSTLTLLKELNLSGNLIS-DI-SGLESLKSLKLL  167 (414)
T ss_pred             cccceeeeeccccchh-hcccchhhhhcchheecccccccc-cc-chhhccchhhheeccCcch-hc-cCCccchhhhcc
Confidence            3455555555555555 222224445555555555555552 21 2334444555555555554 22 223335555555


Q ss_pred             EccCccCcccCChh-ccCCCCCCEEEcccCCCC
Q 024632          149 DLHDNLLTGQIPQQ-LGLLVRLSAFDVSNNKLS  180 (265)
Q Consensus       149 ~Ls~N~l~~~~p~~-~~~l~~L~~L~l~~N~l~  180 (265)
                      ++++|++. .++.. ...+.+++.+++.+|.+.
T Consensus       168 ~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  168 DLSYNRIV-DIENDELSELISLEELDLGGNSIR  199 (414)
T ss_pred             cCCcchhh-hhhhhhhhhccchHHHhccCCchh
Confidence            55555555 22221 244455555555555554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.07  E-value=1.1e-06  Score=79.67  Aligned_cols=106  Identities=31%  Similarity=0.391  Sum_probs=67.4

Q ss_pred             CCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEE
Q 024632           70 NGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVID  149 (265)
Q Consensus        70 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  149 (265)
                      +..+..+++..|.+. .+-..+..+.+|+.|++..|.+. .+...+..+++|++|++++|.++..  ..+..+..|+.|+
T Consensus        71 l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~  146 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELN  146 (414)
T ss_pred             hHhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhhhe
Confidence            345555666666666 23334666677777777777777 3443356677777777777777632  2355566677777


Q ss_pred             ccCccCcccCChhccCCCCCCEEEcccCCCCC
Q 024632          150 LHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSG  181 (265)
Q Consensus       150 Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g  181 (265)
                      +++|.++ .++ .+..++.|+.+++++|.++.
T Consensus       147 l~~N~i~-~~~-~~~~l~~L~~l~l~~n~i~~  176 (414)
T KOG0531|consen  147 LSGNLIS-DIS-GLESLKSLKLLDLSYNRIVD  176 (414)
T ss_pred             eccCcch-hcc-CCccchhhhcccCCcchhhh
Confidence            7777776 332 34556777777777777763

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=1.3e-06  Score=76.87  Aligned_cols=87  Identities=21%  Similarity=0.258  Sum_probs=44.5

Q ss_pred             CCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCc--hHhhhCCcCCEEEccCccCccc-CChh-----cc
Q 024632           93 NCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIP--PQLTLCAYLNVIDLHDNLLTGQ-IPQQ-----LG  164 (265)
Q Consensus        93 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~-~p~~-----~~  164 (265)
                      .+|+|+.|+|+.|..-+.-.....-+..|+.|||++|.+- ..+  ...+.++.|+.|+++.+.+... .|+.     ..
T Consensus       220 ~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~  298 (505)
T KOG3207|consen  220 TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTH  298 (505)
T ss_pred             hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhc
Confidence            3455555555555311111112223455666666666654 233  2345566666666666666531 2222     24


Q ss_pred             CCCCCCEEEcccCCCC
Q 024632          165 LLVRLSAFDVSNNKLS  180 (265)
Q Consensus       165 ~l~~L~~L~l~~N~l~  180 (265)
                      .+++|++|+++.|+++
T Consensus       299 ~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  299 TFPKLEYLNISENNIR  314 (505)
T ss_pred             ccccceeeecccCccc
Confidence            4566777777777664

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.02  E-value=1.1e-06  Score=77.48  Aligned_cols=141  Identities=20%  Similarity=0.229  Sum_probs=72.0

Q ss_pred             eeecCCCeEEEEeeCCCcccc--CCccCcCCCCCCEEECcCCCCCCCCCCC-cccCcccceeccccccCCC---------
Q 024632           66 ATCNNGRIYKLSLTNLSLQGS--ISPYLSNCTNLQSLDLSSNALTGSIPAD-LQYLVNLAVLNLSANRLAG---------  133 (265)
Q Consensus        66 ~~~~~~~l~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~---------  133 (265)
                      +...+++++.|||+.|-+...  +-.....+++|+.|+++.|++.-..... -..+++|+.|.|+.+.++.         
T Consensus       141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~  220 (505)
T KOG3207|consen  141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT  220 (505)
T ss_pred             hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence            334467777777777766522  2233455677777777777665222111 1134455555555554442         


Q ss_pred             ----------------CCchHhhhCCcCCEEEccCccCcccCC--hhccCCCCCCEEEcccCCCCCC-CCh-hhhccCCC
Q 024632          134 ----------------EIPPQLTLCAYLNVIDLHDNLLTGQIP--QQLGLLVRLSAFDVSNNKLSGP-IPA-SLGNRSGN  193 (265)
Q Consensus       134 ----------------~~p~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~l~~N~l~g~-~p~-~~~~~~~~  193 (265)
                                      .-......+..|+.|||++|++- ..+  ...+.++.|+.|+++.+.++.. .|+ .....+..
T Consensus       221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~  299 (505)
T KOG3207|consen  221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHT  299 (505)
T ss_pred             CCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcc
Confidence                            11112233445666666666655 223  2345666666666666665432 222 11222344


Q ss_pred             CCCCCCCCCCCCCC
Q 024632          194 LPKFNASSFEGNKD  207 (265)
Q Consensus       194 l~~l~~~~~~~N~~  207 (265)
                      ++.++.++...|+.
T Consensus       300 f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  300 FPKLEYLNISENNI  313 (505)
T ss_pred             cccceeeecccCcc
Confidence            66666666666653

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.01  E-value=8.8e-08  Score=89.00  Aligned_cols=106  Identities=26%  Similarity=0.278  Sum_probs=83.9

Q ss_pred             CCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEE
Q 024632           70 NGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVID  149 (265)
Q Consensus        70 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  149 (265)
                      ++.++.|+|++|+++ .+. .+..++.|++|||++|.+. .+|..-..--+|+.|.+++|.++ .+ ..+.++.+|+.||
T Consensus       186 l~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~-tL-~gie~LksL~~LD  260 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALT-TL-RGIENLKSLYGLD  260 (1096)
T ss_pred             HHHhhhhccchhhhh-hhH-HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHH-hh-hhHHhhhhhhccc
Confidence            578999999999998 343 7889999999999999998 66643222234999999999998 33 4688999999999


Q ss_pred             ccCccCcccCC-hhccCCCCCCEEEcccCCCC
Q 024632          150 LHDNLLTGQIP-QQLGLLVRLSAFDVSNNKLS  180 (265)
Q Consensus       150 Ls~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~  180 (265)
                      +++|-+.+.-. ..+..+..|+.|.|.+|++.
T Consensus       261 lsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  261 LSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            99999885321 12455677889999999875

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.89  E-value=2.8e-05  Score=46.75  Aligned_cols=41  Identities=34%  Similarity=0.674  Sum_probs=29.9

Q ss_pred             hhHHHHHHHHHHhCC-CCCCCCCCCCCCCCCCCCCCCCCCCCceeec
Q 024632           24 PNDEACLTHLSQSLK-DPYKNLQNWTKSTFSNACNGFTSYLPGATCN   69 (265)
Q Consensus        24 ~~~~~~l~~~~~~l~-~~~~~~~~w~~~~~~~~c~~~~~~~~~~~~~   69 (265)
                      ++|.++|++||+.+. +|...+.+|+.....++|+     |.|+.|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~-----W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCS-----WSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCC-----STTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcCCCCCee-----eccEEeC
Confidence            579999999999998 5778899999753247897     9999984

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.86  E-value=2e-05  Score=62.97  Aligned_cols=105  Identities=25%  Similarity=0.296  Sum_probs=74.4

Q ss_pred             CCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCc--hHhhhCCcCCEE
Q 024632           71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIP--PQLTLCAYLNVI  148 (265)
Q Consensus        71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L  148 (265)
                      .+...+||++|.+. .+ +.|..++.|.+|.+++|+|+..-|.--..+++|+.|.|.+|++. .+-  +.+..++.|++|
T Consensus        42 d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYL  118 (233)
T ss_pred             cccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCcccee
Confidence            45678899999886 23 34777888999999999998444433344677999999999886 221  235677888999


Q ss_pred             EccCccCcccCC---hhccCCCCCCEEEcccCC
Q 024632          149 DLHDNLLTGQIP---QQLGLLVRLSAFDVSNNK  178 (265)
Q Consensus       149 ~Ls~N~l~~~~p---~~~~~l~~L~~L~l~~N~  178 (265)
                      .+-+|..+..--   ..+..+++|+.||...=.
T Consensus       119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             eecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            888888873211   235677888888887643

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.69  E-value=6e-05  Score=60.35  Aligned_cols=107  Identities=21%  Similarity=0.242  Sum_probs=75.1

Q ss_pred             CCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCC--hhccCCCCCCE
Q 024632           94 CTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIP--QQLGLLVRLSA  171 (265)
Q Consensus        94 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~  171 (265)
                      +.....+||+.|.+. .+ ..|..++.|.+|.+++|+++..-|.--.-+++|..|.|.+|++. .+.  +-+..+++|++
T Consensus        41 ~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~  117 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEY  117 (233)
T ss_pred             ccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccce
Confidence            346678899999987 33 36788999999999999999555554445678999999999987 322  23567889999


Q ss_pred             EEcccCCCCCCCChhhhccCCCCCCCCCCCCCC
Q 024632          172 FDVSNNKLSGPIPASLGNRSGNLPKFNASSFEG  204 (265)
Q Consensus       172 L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~  204 (265)
                      |.+-+|+.+. -...-....-.+|++..++|++
T Consensus       118 Ltll~Npv~~-k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  118 LTLLGNPVEH-KKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             eeecCCchhc-ccCceeEEEEecCcceEeehhh
Confidence            9999998862 2221111122366666666654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.66  E-value=9e-06  Score=69.85  Aligned_cols=134  Identities=19%  Similarity=0.246  Sum_probs=87.3

Q ss_pred             CCeEEEEeeCCCccccCCc----cCcCCCCCCEEECcCCCCCCC-------------CCCCcccCcccceeccccccCCC
Q 024632           71 GRIYKLSLTNLSLQGSISP----YLSNCTNLQSLDLSSNALTGS-------------IPADLQYLVNLAVLNLSANRLAG  133 (265)
Q Consensus        71 ~~l~~L~L~~n~l~~~~p~----~l~~l~~L~~L~Ls~N~l~~~-------------~p~~l~~l~~L~~L~Ls~N~l~~  133 (265)
                      ++|++|+|++|.+...-++    -+..+..|++|+|.+|.+...             ...-...-+.|+++...+|++..
T Consensus        92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen  171 (382)
T KOG1909|consen   92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN  171 (382)
T ss_pred             CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence            4889999999988643332    355678889999998887621             11123445778888888888863


Q ss_pred             C----CchHhhhCCcCCEEEccCccCcc----cCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCC
Q 024632          134 E----IPPQLTLCAYLNVIDLHDNLLTG----QIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEG  204 (265)
Q Consensus       134 ~----~p~~~~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~  204 (265)
                      .    +...+...+.|+.+.+..|.|..    .+-..+..+++|+.||+..|-|+-.--..++.....++.+..+++++
T Consensus       172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d  250 (382)
T KOG1909|consen  172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD  250 (382)
T ss_pred             ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence            2    12345666788888888887752    12245677888888888888887443344444334455566665554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.58  E-value=4.1e-05  Score=63.46  Aligned_cols=117  Identities=26%  Similarity=0.274  Sum_probs=78.9

Q ss_pred             CCCCCCCCCCCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCC--CCCCCCCCCcccCcccceeccccccC
Q 024632           54 NACNGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSN--ALTGSIPADLQYLVNLAVLNLSANRL  131 (265)
Q Consensus        54 ~~c~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N--~l~~~~p~~l~~l~~L~~L~Ls~N~l  131 (265)
                      |.|-...+...+.+-....++.+++.+.+++. + ..+..+++|+.|+++.|  .+.+.++.....+++|++|++++|++
T Consensus        26 D~~~s~~g~~~gl~d~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki  103 (260)
T KOG2739|consen   26 DNARSGAGKLGGLTDEFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI  103 (260)
T ss_pred             chhhhcCCCcccccccccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence            45555555566666667778888888877762 2 23566888999999999  56655655556679999999999998


Q ss_pred             CCCCchH---hhhCCcCCEEEccCccCcccC---ChhccCCCCCCEEEc
Q 024632          132 AGEIPPQ---LTLCAYLNVIDLHDNLLTGQI---PQQLGLLVRLSAFDV  174 (265)
Q Consensus       132 ~~~~p~~---~~~l~~L~~L~Ls~N~l~~~~---p~~~~~l~~L~~L~l  174 (265)
                      +.  ++.   ...+.+|..|++.+|..+..-   -..|.-+++|++||-
T Consensus       104 ~~--lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  104 KD--LSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             cc--ccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            72  333   345667778888888776421   123455667766653

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.32  E-value=7.8e-05  Score=71.39  Aligned_cols=126  Identities=20%  Similarity=0.216  Sum_probs=88.7

Q ss_pred             CCCceeec-CCCeEEEEeeCCCcc-ccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCC-CCchH
Q 024632           62 YLPGATCN-NGRIYKLSLTNLSLQ-GSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAG-EIPPQ  138 (265)
Q Consensus        62 ~~~~~~~~-~~~l~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~  138 (265)
                      .|+..++. ++.|++|.+.+-.+. ..+..-..++++|..||+|+.+++ .+ ..++.+.+|+.|-+.+=.+.. ..-..
T Consensus       138 ~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~  215 (699)
T KOG3665|consen  138 GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLID  215 (699)
T ss_pred             cHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHH
Confidence            37766554 799999999987764 223344667889999999999888 33 567888999988887766652 11235


Q ss_pred             hhhCCcCCEEEccCccCcccC--C----hhccCCCCCCEEEcccCCCCCCCChhhhc
Q 024632          139 LTLCAYLNVIDLHDNLLTGQI--P----QQLGLLVRLSAFDVSNNKLSGPIPASLGN  189 (265)
Q Consensus       139 ~~~l~~L~~L~Ls~N~l~~~~--p----~~~~~l~~L~~L~l~~N~l~g~~p~~~~~  189 (265)
                      +.++++|++||+|........  .    +.-..+|.|+.||.|+..+...+-+.+-+
T Consensus       216 LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~  272 (699)
T KOG3665|consen  216 LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLN  272 (699)
T ss_pred             HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHH
Confidence            678899999999987655221  1    12245889999999988887655444443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.16  E-value=0.0013  Score=58.92  Aligned_cols=14  Identities=7%  Similarity=0.145  Sum_probs=7.5

Q ss_pred             CCeEEEEeeCCCcc
Q 024632           71 GRIYKLSLTNLSLQ   84 (265)
Q Consensus        71 ~~l~~L~L~~n~l~   84 (265)
                      .+++.|++++|.++
T Consensus        52 ~~l~~L~Is~c~L~   65 (426)
T PRK15386         52 RASGRLYIKDCDIE   65 (426)
T ss_pred             cCCCEEEeCCCCCc
Confidence            44555555555554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.09  E-value=8.8e-05  Score=63.91  Aligned_cols=41  Identities=29%  Similarity=0.355  Sum_probs=17.6

Q ss_pred             ccCcccceeccccccCCCC----CchHhhhCCcCCEEEccCccCc
Q 024632          116 QYLVNLAVLNLSANRLAGE----IPPQLTLCAYLNVIDLHDNLLT  156 (265)
Q Consensus       116 ~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~  156 (265)
                      ..+++|+.|||..|.++..    +...+..++.|+.++++++.+.
T Consensus       210 ~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  210 EHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             HhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence            3344555555555544321    1112233444555555555444

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.02  E-value=0.00017  Score=69.12  Aligned_cols=134  Identities=17%  Similarity=0.200  Sum_probs=93.0

Q ss_pred             CCeEEEEeeCCCcc-ccCCccCc-CCCCCCEEECcCCCCCCC-CCCCcccCcccceeccccccCCCCCchHhhhCCcCCE
Q 024632           71 GRIYKLSLTNLSLQ-GSISPYLS-NCTNLQSLDLSSNALTGS-IPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNV  147 (265)
Q Consensus        71 ~~l~~L~L~~n~l~-~~~p~~l~-~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  147 (265)
                      .+|++|++++...- ..-|..++ .+|+|+.|.+++-.+... +.....++++|..||+|+..++. + .+++++++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHH
Confidence            57888999886543 11222333 479999999988766422 22334578999999999999983 3 78999999999


Q ss_pred             EEccCccCcc-cCChhccCCCCCCEEEcccCCCCCC--CChhhhccCCCCCCCCCCCCCCCC
Q 024632          148 IDLHDNLLTG-QIPQQLGLLVRLSAFDVSNNKLSGP--IPASLGNRSGNLPKFNASSFEGNK  206 (265)
Q Consensus       148 L~Ls~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~g~--~p~~~~~~~~~l~~l~~~~~~~N~  206 (265)
                      |.+.+=.+.. ..-..+.++++|+.||+|.......  +...+-.+...+|+|..++.+|..
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd  261 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD  261 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence            9877666652 1123577899999999998766422  334444445568888888877653

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.01  E-value=0.00061  Score=56.61  Aligned_cols=91  Identities=23%  Similarity=0.328  Sum_probs=67.6

Q ss_pred             CCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccc--cCCCCCchHhhhCCcCCEEEccCccCcccCChh--
Q 024632           87 ISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSAN--RLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQ--  162 (265)
Q Consensus        87 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N--~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~--  162 (265)
                      +..-.-.+..|+.+.+.+..++ .+ ..+..+++|++|.++.|  +..+.++.....+++|+++++++|++..  ++.  
T Consensus        35 ~~gl~d~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~  110 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLR  110 (260)
T ss_pred             cccccccccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccc
Confidence            4444455667777777777766 22 35678899999999999  6666666666677999999999999983  333  


Q ss_pred             -ccCCCCCCEEEcccCCCCC
Q 024632          163 -LGLLVRLSAFDVSNNKLSG  181 (265)
Q Consensus       163 -~~~l~~L~~L~l~~N~l~g  181 (265)
                       +..+.+|..|++.+|..+.
T Consensus       111 pl~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  111 PLKELENLKSLDLFNCSVTN  130 (260)
T ss_pred             hhhhhcchhhhhcccCCccc
Confidence             4566778899999987764

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.98  E-value=0.0021  Score=57.59  Aligned_cols=95  Identities=14%  Similarity=0.271  Sum_probs=56.2

Q ss_pred             CCeEEEEeeCCCccccCCccCcCCCCCCEEECcCC-CCCCCCCCCcccCcccceeccccccCC--CCCchHhhhC-----
Q 024632           71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSN-ALTGSIPADLQYLVNLAVLNLSANRLA--GEIPPQLTLC-----  142 (265)
Q Consensus        71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~--~~~p~~~~~l-----  142 (265)
                      .+|++|.++++.--..+|..+.  .+|+.|++++| .+. .+|..      |+.|+++.|...  +.+|.++..+     
T Consensus        72 ~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~s------Le~L~L~~n~~~~L~~LPssLk~L~I~~~  142 (426)
T PRK15386         72 NELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPES------VRSLEIKGSATDSIKNVPNGLTSLSINSY  142 (426)
T ss_pred             CCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-ccccc------cceEEeCCCCCcccccCcchHhheecccc
Confidence            3578888877433235565442  57788888877 454 45543      444455544321  2455444333     


Q ss_pred             -------------CcCCEEEccCccCcccCChhccCCCCCCEEEcccC
Q 024632          143 -------------AYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNN  177 (265)
Q Consensus       143 -------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N  177 (265)
                                   ++|++|++++|... .+|..+.  .+|+.|+++.|
T Consensus       143 n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        143 NPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             ccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence                         36888888887765 4554433  47888888776

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.73  E-value=0.0012  Score=56.19  Aligned_cols=136  Identities=18%  Similarity=0.190  Sum_probs=80.8

Q ss_pred             cCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCC-CCCCcccCcccceeccccccCCCCC---------chH
Q 024632           69 NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGS-IPADLQYLVNLAVLNLSANRLAGEI---------PPQ  138 (265)
Q Consensus        69 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~---------p~~  138 (265)
                      +++++++|+++.|.+...+...-..+.+|+.|.|.+..+.-. ....+..++.++.|.+|.|.+....         ...
T Consensus        95 ~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~  174 (418)
T KOG2982|consen   95 QLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTE  174 (418)
T ss_pred             cCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchh
Confidence            689999999999999844332224566888888888776532 3344566788888888888443100         000


Q ss_pred             h--------------------hhCCcCCEEEccCccCccc-CChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCC
Q 024632          139 L--------------------TLCAYLNVIDLHDNLLTGQ-IPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKF  197 (265)
Q Consensus       139 ~--------------------~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l  197 (265)
                      +                    ..++++..+.+..|.+... ....+..++.+..|+|+.|++...  +++.. ...++.+
T Consensus       175 v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idsw--asvD~-Ln~f~~l  251 (418)
T KOG2982|consen  175 VLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSW--ASVDA-LNGFPQL  251 (418)
T ss_pred             hhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccH--HHHHH-HcCCchh
Confidence            0                    1234555555555655421 112344566677788888877532  11222 1237777


Q ss_pred             CCCCCCCCCC
Q 024632          198 NASSFEGNKD  207 (265)
Q Consensus       198 ~~~~~~~N~~  207 (265)
                      ..++++.||.
T Consensus       252 ~dlRv~~~Pl  261 (418)
T KOG2982|consen  252 VDLRVSENPL  261 (418)
T ss_pred             heeeccCCcc
Confidence            7777877774

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.40  E-value=0.0013  Score=56.01  Aligned_cols=85  Identities=32%  Similarity=0.402  Sum_probs=52.7

Q ss_pred             CCCCCEEECcCCCCCC--CCCCCcccCcccceeccccccCCCCCchHh-hhCCcCCEEEccCccCcccC-ChhccCCCCC
Q 024632           94 CTNLQSLDLSSNALTG--SIPADLQYLVNLAVLNLSANRLAGEIPPQL-TLCAYLNVIDLHDNLLTGQI-PQQLGLLVRL  169 (265)
Q Consensus        94 l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L  169 (265)
                      .+.++++||.+|.++.  .+..-+.+++.|++|+++.|.+...+. .. ....+|+++-|.+..+...- -..+..+|.+
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-cCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            4667788888888772  122235567888888888888763221 11 23456777777776665322 2334566777


Q ss_pred             CEEEcccCCC
Q 024632          170 SAFDVSNNKL  179 (265)
Q Consensus       170 ~~L~l~~N~l  179 (265)
                      +.|+++.|.+
T Consensus       149 telHmS~N~~  158 (418)
T KOG2982|consen  149 TELHMSDNSL  158 (418)
T ss_pred             hhhhhccchh
Confidence            7777777744

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.39  E-value=0.00024  Score=59.69  Aligned_cols=78  Identities=28%  Similarity=0.325  Sum_probs=43.1

Q ss_pred             cCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCC--CcccCcccceeccccccCCCCCchH-----hhh
Q 024632           69 NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPA--DLQYLVNLAVLNLSANRLAGEIPPQ-----LTL  141 (265)
Q Consensus        69 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~~-----~~~  141 (265)
                      .++.|+.|.|+-|.|+..  ..+..++.|++|+|..|.|. .+.+  -+.++++|+.|.|..|.-.|.-+..     +..
T Consensus        39 kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~  115 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRV  115 (388)
T ss_pred             hcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHH
Confidence            466666667666666622  12555666666666666665 3322  2455666666666666655443332     334


Q ss_pred             CCcCCEEE
Q 024632          142 CAYLNVID  149 (265)
Q Consensus       142 l~~L~~L~  149 (265)
                      +++|+.||
T Consensus       116 LPnLkKLD  123 (388)
T KOG2123|consen  116 LPNLKKLD  123 (388)
T ss_pred             cccchhcc
Confidence            55555543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.24  E-value=0.00026  Score=60.10  Aligned_cols=59  Identities=22%  Similarity=0.219  Sum_probs=30.6

Q ss_pred             hCCcCCEEEccCcc-CcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCC
Q 024632          141 LCAYLNVIDLHDNL-LTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSF  202 (265)
Q Consensus       141 ~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~  202 (265)
                      ++++|..|||++|. ++...-..|..++.|++|.++.+..  .+|..+-.+ ...|.+..++.
T Consensus       311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l-~s~psl~yLdv  370 (419)
T KOG2120|consen  311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLEL-NSKPSLVYLDV  370 (419)
T ss_pred             hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeee-ccCcceEEEEe
Confidence            45666667766554 3322233455666667776666653  455544432 22444544443

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=96.08  E-value=0.012  Score=43.61  Aligned_cols=36  Identities=19%  Similarity=0.131  Sum_probs=17.4

Q ss_pred             CCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 024632          219 KGLSVLAIVGIGLGSGFASLVISFTGVCIWLKVTEH  254 (265)
Q Consensus       219 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (265)
                      ++++...|++|++|+++.++.+++++.++.+|+|||
T Consensus        59 h~fs~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk   94 (122)
T PF01102_consen   59 HRFSEPAIIGIIFGVMAGVIGIILLISYCIRRLRKK   94 (122)
T ss_dssp             SSSS-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred             cCccccceeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            355666777777776655444433333333333333

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.06  E-value=0.0025  Score=32.23  Aligned_cols=12  Identities=50%  Similarity=0.625  Sum_probs=5.1

Q ss_pred             CCEEEccCccCc
Q 024632          145 LNVIDLHDNLLT  156 (265)
Q Consensus       145 L~~L~Ls~N~l~  156 (265)
                      |++||+++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            344444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.01  E-value=0.0002  Score=58.66  Aligned_cols=85  Identities=19%  Similarity=0.141  Sum_probs=60.6

Q ss_pred             cCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEE
Q 024632           69 NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVI  148 (265)
Q Consensus        69 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  148 (265)
                      ...+++.||++.|++. .+...++-++.+..||++.|.+. ..|+++.+...++.+++..|.++ ..|.+++..+.++++
T Consensus        40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN  116 (326)
T ss_pred             ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence            4567777777777765 34455666667777777777777 67777777777777777777777 667777777777777


Q ss_pred             EccCccCc
Q 024632          149 DLHDNLLT  156 (265)
Q Consensus       149 ~Ls~N~l~  156 (265)
                      ++-.|.+.
T Consensus       117 e~k~~~~~  124 (326)
T KOG0473|consen  117 EQKKTEFF  124 (326)
T ss_pred             hhccCcch
Confidence            77777665

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.81  E-value=0.0002  Score=58.72  Aligned_cols=88  Identities=20%  Similarity=0.204  Sum_probs=74.1

Q ss_pred             cCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCC
Q 024632           90 YLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRL  169 (265)
Q Consensus        90 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  169 (265)
                      ++......+.||++.|++. .+-..+..++.+..||++.|.+. -+|..++....++.+++..|..+ ..|.+++..+.+
T Consensus        37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~  113 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP  113 (326)
T ss_pred             hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence            3555677788999999887 66677888888999999999988 67888888888888888888888 788889999999


Q ss_pred             CEEEcccCCCC
Q 024632          170 SAFDVSNNKLS  180 (265)
Q Consensus       170 ~~L~l~~N~l~  180 (265)
                      +++++-.|.|.
T Consensus       114 k~~e~k~~~~~  124 (326)
T KOG0473|consen  114 KKNEQKKTEFF  124 (326)
T ss_pred             chhhhccCcch
Confidence            99999888865

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.64  E-value=0.029  Score=41.54  Aligned_cols=105  Identities=19%  Similarity=0.279  Sum_probs=54.9

Q ss_pred             eecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCC
Q 024632           67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLN  146 (265)
Q Consensus        67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  146 (265)
                      +.+.++++.+.+.+ .+...-...|..+++|+.+++..+ +...-...|..+.+++.+.+.+ .+.......+..+++|+
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~   84 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK   84 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence            33456777888775 455344455777888888888775 5523334567777888888865 33323334566678888


Q ss_pred             EEEccCccCcccCChhccCCCCCCEEEccc
Q 024632          147 VIDLHDNLLTGQIPQQLGLLVRLSAFDVSN  176 (265)
Q Consensus       147 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~  176 (265)
                      .+++..+ +...-...|.+. +++.+.+..
T Consensus        85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             EEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             ccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            8888765 442333445565 777777664

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.62  E-value=0.0027  Score=32.05  Aligned_cols=18  Identities=44%  Similarity=0.720  Sum_probs=8.5

Q ss_pred             cceeccccccCCCCCchHh
Q 024632          121 LAVLNLSANRLAGEIPPQL  139 (265)
Q Consensus       121 L~~L~Ls~N~l~~~~p~~~  139 (265)
                      |++||+++|.++ .+|+.|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            444555555554 444433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=95.50  E-value=0.034  Score=31.77  Aligned_cols=14  Identities=21%  Similarity=0.434  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHHhhh
Q 024632          238 LVISFTGVCIWLKV  251 (265)
Q Consensus       238 ~~~~~~~~~~~~~~  251 (265)
                      .++++.+.++++|.
T Consensus        20 ii~~~~YaCcykk~   33 (38)
T PF02439_consen   20 IICMFYYACCYKKH   33 (38)
T ss_pred             HHHHHHHHHHHccc
Confidence            33444444554333

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.50  E-value=0.026  Score=47.66  Aligned_cols=111  Identities=20%  Similarity=0.222  Sum_probs=58.4

Q ss_pred             cCCCeEEEEeeCCCccccCCcc----CcCCCCCCEEECcCCCCCCCCCCCc-------------ccCcccceeccccccC
Q 024632           69 NNGRIYKLSLTNLSLQGSISPY----LSNCTNLQSLDLSSNALTGSIPADL-------------QYLVNLAVLNLSANRL  131 (265)
Q Consensus        69 ~~~~l~~L~L~~n~l~~~~p~~----l~~l~~L~~L~Ls~N~l~~~~p~~l-------------~~l~~L~~L~Ls~N~l  131 (265)
                      .+++++.++|+.|.+....|+.    ++.-+.|.+|.+++|.+...-...+             .+-+.|+.....+|++
T Consensus        90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl  169 (388)
T COG5238          90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL  169 (388)
T ss_pred             cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence            3467777777777776555543    4445667777777776641111111             1235566666666666


Q ss_pred             CCCCchH-----hhhCCcCCEEEccCccCccc-----CChhccCCCCCCEEEcccCCCC
Q 024632          132 AGEIPPQ-----LTLCAYLNVIDLHDNLLTGQ-----IPQQLGLLVRLSAFDVSNNKLS  180 (265)
Q Consensus       132 ~~~~p~~-----~~~l~~L~~L~Ls~N~l~~~-----~p~~~~~l~~L~~L~l~~N~l~  180 (265)
                      . ..|..     +..-..|+++.+..|.|...     +-..+..+.+|+.||+..|.|+
T Consensus       170 e-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft  227 (388)
T COG5238         170 E-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT  227 (388)
T ss_pred             c-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence            5 22221     12223556666666655411     0011234456667777777665

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.08  E-value=0.002  Score=54.36  Aligned_cols=99  Identities=27%  Similarity=0.279  Sum_probs=76.2

Q ss_pred             CCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCch--HhhhCCcCCE
Q 024632           70 NGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPP--QLTLCAYLNV  147 (265)
Q Consensus        70 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~  147 (265)
                      +.+++.|+..++++.. + .....++.|++|.||-|+++ .+ ..+..++.|+.|+|..|.|. .+.+  -+.++++|+.
T Consensus        18 l~~vkKLNcwg~~L~D-I-sic~kMp~lEVLsLSvNkIs-sL-~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDD-I-SICEKMPLLEVLSLSVNKIS-SL-APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCccH-H-HHHHhcccceeEEeeccccc-cc-hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhh
Confidence            5667778888888773 2 23567899999999999998 33 34778999999999999997 4433  3578899999


Q ss_pred             EEccCccCcccCChh-----ccCCCCCCEEE
Q 024632          148 IDLHDNLLTGQIPQQ-----LGLLVRLSAFD  173 (265)
Q Consensus       148 L~Ls~N~l~~~~p~~-----~~~l~~L~~L~  173 (265)
                      |-|..|.-.|.-+..     +..+++|+.||
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            999999988766543     45677777775

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=94.80  E-value=0.00029  Score=59.77  Aligned_cols=57  Identities=32%  Similarity=0.429  Sum_probs=27.1

Q ss_pred             CeEEEEeeCCCccc-cCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceecccc
Q 024632           72 RIYKLSLTNLSLQG-SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSA  128 (265)
Q Consensus        72 ~l~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  128 (265)
                      +|++|||++..++. .+...++.+..|+.|.+.++++++.+-..+.+-.+|+.|+++.
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm  243 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSM  243 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccc
Confidence            35555665555541 1222344445555555555555544433444444455555444

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=94.43  E-value=0.019  Score=48.51  Aligned_cols=113  Identities=23%  Similarity=0.258  Sum_probs=65.4

Q ss_pred             CcCCCCCCEEECcCCCCCCCCCCCc----ccCcccceeccccccCCCCCc-hHh-------------hhCCcCCEEEccC
Q 024632           91 LSNCTNLQSLDLSSNALTGSIPADL----QYLVNLAVLNLSANRLAGEIP-PQL-------------TLCAYLNVIDLHD  152 (265)
Q Consensus        91 l~~l~~L~~L~Ls~N~l~~~~p~~l----~~l~~L~~L~Ls~N~l~~~~p-~~~-------------~~l~~L~~L~Ls~  152 (265)
                      +.++++|+..+||.|.+....|+.+    ..-+.|.+|.+++|.+. .+. ..+             ..-+.|++.....
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgr  166 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGR  166 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence            5566777777777777766555543    34466777777777764 221 112             1235677777777


Q ss_pred             ccCcccCCh-----hccCCCCCCEEEcccCCCCCCCChhhhcc----CCCCCCCCCCCCCCCCCC
Q 024632          153 NLLTGQIPQ-----QLGLLVRLSAFDVSNNKLSGPIPASLGNR----SGNLPKFNASSFEGNKDL  208 (265)
Q Consensus       153 N~l~~~~p~-----~~~~l~~L~~L~l~~N~l~g~~p~~~~~~----~~~l~~l~~~~~~~N~~~  208 (265)
                      |++.. -|.     .+..-..|+.+.+..|-+.   |..+..+    .....+|+.+++++|.+.
T Consensus       167 NRlen-gs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtft  227 (388)
T COG5238         167 NRLEN-GSKELSAALLESHENLKEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTFT  227 (388)
T ss_pred             chhcc-CcHHHHHHHHHhhcCceeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccchh
Confidence            77652 221     1223346677777777654   4422211    112567788899998764

>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world

Probab=93.58  E-value=0.073  Score=45.81  Aligned_cols=25  Identities=16%  Similarity=0.006  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhcccccc
Q 024632          233 SGFASLVISFTGVCIWLKVTEHKMA  257 (265)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~  257 (265)
                      +++++++++++....||+|||++++
T Consensus       264 aIliIVLIMvIIYLILRYRRKKKmk  288 (299)
T PF02009_consen  264 AILIIVLIMVIIYLILRYRRKKKMK  288 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            3344444545555555565555543

Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=93.44  E-value=0.076  Score=39.26  Aligned_cols=100  Identities=18%  Similarity=0.238  Sum_probs=51.6

Q ss_pred             ceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCc
Q 024632           65 GATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAY  144 (265)
Q Consensus        65 ~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  144 (265)
                      ..+...++++.+.+.++ +...-...+..+.+++.+.+.. .+...-...|..+++|+.+++..+ +...-...+.++ +
T Consensus        29 ~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~  104 (129)
T PF13306_consen   29 NAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-N  104 (129)
T ss_dssp             TTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T
T ss_pred             hhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-C
Confidence            34455668899999885 6633445678888899999976 444223345667899999999776 442334456666 8


Q ss_pred             CCEEEccCccCcccCChhccCCCCC
Q 024632          145 LNVIDLHDNLLTGQIPQQLGLLVRL  169 (265)
Q Consensus       145 L~~L~Ls~N~l~~~~p~~~~~l~~L  169 (265)
                      |+.+.+.. .+...-...|.+.++|
T Consensus       105 l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen  105 LKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             --EEE-TT-B-SS----GGG-----
T ss_pred             ceEEEECC-CccEECCccccccccC
Confidence            88888876 4432334456665555

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=92.94  E-value=0.017  Score=44.07  Aligned_cols=34  Identities=18%  Similarity=0.147  Sum_probs=15.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 024632          224 LAIVGIGLGSGFASLVISFTGVCIWLKVTEHKMA  257 (265)
Q Consensus       224 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (265)
                      ..++++++|+++.++++++++++++++|+||...
T Consensus        49 nIVIGvVVGVGg~ill~il~lvf~~c~r~kktdf   82 (154)
T PF04478_consen   49 NIVIGVVVGVGGPILLGILALVFIFCIRRKKTDF   82 (154)
T ss_pred             cEEEEEEecccHHHHHHHHHhheeEEEecccCcc
Confidence            4456666665544444433333333333333333

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.18  E-value=0.15  Score=26.49  Aligned_cols=18  Identities=44%  Similarity=0.730  Sum_probs=10.3

Q ss_pred             CCCCEEEcccCCCCCCCCh
Q 024632          167 VRLSAFDVSNNKLSGPIPA  185 (265)
Q Consensus       167 ~~L~~L~l~~N~l~g~~p~  185 (265)
                      ++|+.|++++|+++ .+|.
T Consensus         2 ~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCEEECCCCcCC-cCCH
Confidence            45666666666665 4444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.18  E-value=0.15  Score=26.49  Aligned_cols=18  Identities=44%  Similarity=0.730  Sum_probs=10.3

Q ss_pred             CCCCEEEcccCCCCCCCCh
Q 024632          167 VRLSAFDVSNNKLSGPIPA  185 (265)
Q Consensus       167 ~~L~~L~l~~N~l~g~~p~  185 (265)
                      ++|+.|++++|+++ .+|.
T Consensus         2 ~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCEEECCCCcCC-cCCH
Confidence            45666666666665 4444

>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A

Probab=91.98  E-value=0.14  Score=34.65  Aligned_cols=26  Identities=8%  Similarity=0.068  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 024632          227 VGIGLGSGFASLVISFTGVCIWLKVT  252 (265)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (265)
                      +++++++++++++++++++++++|++
T Consensus         3 i~~~~~g~~~ll~~v~~~~~~~rr~~   28 (75)
T PF14575_consen    3 IASIIVGVLLLLVLVIIVIVCFRRCK   28 (75)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCTT--
T ss_pred             EehHHHHHHHHHHhheeEEEEEeeEc
Confidence            33333343443344444555544443

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.52  E-value=0.17  Score=26.35  Aligned_cols=12  Identities=50%  Similarity=0.667  Sum_probs=4.9

Q ss_pred             cceeccccccCC
Q 024632          121 LAVLNLSANRLA  132 (265)
Q Consensus       121 L~~L~Ls~N~l~  132 (265)
                      |++|+|++|+++
T Consensus         4 L~~L~L~~N~l~   15 (26)
T smart00369        4 LRELDLSNNQLS   15 (26)
T ss_pred             CCEEECCCCcCC
Confidence            344444444443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.52  E-value=0.17  Score=26.35  Aligned_cols=12  Identities=50%  Similarity=0.667  Sum_probs=4.9

Q ss_pred             cceeccccccCC
Q 024632          121 LAVLNLSANRLA  132 (265)
Q Consensus       121 L~~L~Ls~N~l~  132 (265)
                      |++|+|++|+++
T Consensus         4 L~~L~L~~N~l~   15 (26)
T smart00370        4 LRELDLSNNQLS   15 (26)
T ss_pred             CCEEECCCCcCC
Confidence            344444444443

>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5

Probab=91.48  E-value=0.055  Score=46.24  Aligned_cols=31  Identities=13%  Similarity=0.143  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcccccccc
Q 024632          229 IGLGSGFASLVISFTGVCIWLKVTEHKMALD  259 (265)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (265)
                      ++++++++++++++++++|+||||+.++..+
T Consensus       151 paVVI~~iLLIA~iIa~icyrrkR~GK~~~e  181 (290)
T PF05454_consen  151 PAVVIAAILLIAGIIACICYRRKRKGKMSLE  181 (290)
T ss_dssp             -------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhccccccc
Confidence            3333334444555666677666666666653

5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.

>PTZ00382 Variant-specific surface protein (VSP); Provisional

Probab=91.27  E-value=0.054  Score=38.46  Aligned_cols=21  Identities=33%  Similarity=0.341  Sum_probs=13.8

Q ss_pred             CCCCCcchhhHHHHHHHHHHH
Q 024632          217 KSKGLSVLAIVGIGLGSGFAS  237 (265)
Q Consensus       217 ~~~~~~~~~i~~~~~~~~~~~  237 (265)
                      ..++++...|++|++++++++
T Consensus        59 ~~~~ls~gaiagi~vg~~~~v   79 (96)
T PTZ00382         59 NRSGLSTGAIAGISVAVVAVV   79 (96)
T ss_pred             CCCCcccccEEEEEeehhhHH
Confidence            345667778888877765544

>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins

Probab=91.24  E-value=0.48  Score=31.93  Aligned_cols=40  Identities=18%  Similarity=0.031  Sum_probs=25.5

Q ss_pred             CCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Q 024632          220 GLSVLAIVGIGLGSGFASLVISFTGVCIWLKVTEHKMALD  259 (265)
Q Consensus       220 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (265)
                      .++....++++++=+++.++++.++++|.+.|||++++.+
T Consensus        30 ~ls~g~LaGiV~~D~vlTLLIv~~vy~car~r~r~~~~~~   69 (79)
T PF07213_consen   30 PLSPGLLAGIVAADAVLTLLIVLVVYYCARPRRRPTQEDD   69 (79)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCC
Confidence            3566677788877677766666666666655555544444

In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].

>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]

Probab=91.19  E-value=0.039  Score=32.10  Aligned_cols=10  Identities=10%  Similarity=0.414  Sum_probs=4.4

Q ss_pred             HHHHHHhhhc
Q 024632          243 TGVCIWLKVT  252 (265)
Q Consensus       243 ~~~~~~~~~~  252 (265)
                      +++++|+||+
T Consensus        30 ~~l~~~~rR~   39 (40)
T PF08693_consen   30 AFLFFWYRRK   39 (40)
T ss_pred             HHhheEEecc
Confidence            3444444443

This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].

>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=91.17  E-value=0.6  Score=26.74  Aligned_cols=30  Identities=10%  Similarity=0.010  Sum_probs=16.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 024632          226 IVGIGLGSGFASLVISFTGVCIWLKVTEHK  255 (265)
Q Consensus       226 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (265)
                      .++++++++++++++++..++...++||.+
T Consensus         5 ~IaIIv~V~vg~~iiii~~~~YaCcykk~~   34 (38)
T PF02439_consen    5 TIAIIVAVVVGMAIIIICMFYYACCYKKHR   34 (38)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            345555555555555555555555555554

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ]

Probab=90.44  E-value=0.38  Score=36.28  Aligned_cols=9  Identities=33%  Similarity=0.708  Sum_probs=4.7

Q ss_pred             cccccCCCC
Q 024632          257 ALDQEGISM  265 (265)
Q Consensus       257 ~~~~~~~~~  265 (265)
                      +.+|+.+|+
T Consensus        62 Ai~eediQf   70 (189)
T PF05568_consen   62 AIEEEDIQF   70 (189)
T ss_pred             hhhhhcccc
Confidence            345666653

>PTZ00046 rifin; Provisional

Probab=89.05  E-value=0.48  Score=41.58  Aligned_cols=23  Identities=17%  Similarity=0.042  Sum_probs=9.5

Q ss_pred             HHHHHHHHHHHHHHhhhcccccc
Q 024632          235 FASLVISFTGVCIWLKVTEHKMA  257 (265)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~  257 (265)
                      +++++++++.....|+|||++++
T Consensus       325 vVIVLIMvIIYLILRYRRKKKMk  347 (358)
T PTZ00046        325 VVIVLIMVIIYLILRYRRKKKMK  347 (358)
T ss_pred             HHHHHHHHHHHHHHHhhhcchhH
Confidence            33333333333333444444443

>TIGR01477 RIFIN variant surface antigen, rifin family

Probab=88.87  E-value=0.51  Score=41.34  Aligned_cols=19  Identities=21%  Similarity=0.046  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHhhhcccccc
Q 024632          239 VISFTGVCIWLKVTEHKMA  257 (265)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~  257 (265)
                      +++++.....|+|||++++
T Consensus       324 LIMvIIYLILRYRRKKKMk  342 (353)
T TIGR01477       324 LIMVIIYLILRYRRKKKMK  342 (353)
T ss_pred             HHHHHHHHHHHhhhcchhH
Confidence            3333333333444444443

This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=84.82  E-value=0.16  Score=25.90  Aligned_cols=14  Identities=36%  Similarity=0.591  Sum_probs=6.1

Q ss_pred             CcCCEEEccCccCc
Q 024632          143 AYLNVIDLHDNLLT  156 (265)
Q Consensus       143 ~~L~~L~Ls~N~l~  156 (265)
                      ++|++|++++|+++
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            34555555555544

...

>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains

Probab=82.45  E-value=0.93  Score=36.74  Aligned_cols=14  Identities=14%  Similarity=0.005  Sum_probs=5.6

Q ss_pred             hhhHHHHHHHHHHH
Q 024632          224 LAIVGIGLGSGFAS  237 (265)
Q Consensus       224 ~~i~~~~~~~~~~~  237 (265)
                      ..+++++.|++.++
T Consensus        38 ~I~iaiVAG~~tVI   51 (221)
T PF08374_consen   38 KIMIAIVAGIMTVI   51 (221)
T ss_pred             eeeeeeecchhhhH
Confidence            33344444443333

They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].

>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2

Probab=81.69  E-value=2.2  Score=29.33  Aligned_cols=13  Identities=8%  Similarity=-0.194  Sum_probs=6.4

Q ss_pred             HHHHHHHHhhhcc
Q 024632          241 SFTGVCIWLKVTE  253 (265)
Q Consensus       241 ~~~~~~~~~~~~~  253 (265)
                      ++.++.||.+|||
T Consensus        48 VilwfvCC~kRkr   60 (94)
T PF05393_consen   48 VILWFVCCKKRKR   60 (94)
T ss_pred             HHHHHHHHHHhhh
Confidence            3345555555544

; GO: 0016021 integral to membrane

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=81.48  E-value=1  Score=23.66  Aligned_cols=12  Identities=33%  Similarity=0.567  Sum_probs=5.2

Q ss_pred             CCEEEccCccCc
Q 024632          145 LNVIDLHDNLLT  156 (265)
Q Consensus       145 L~~L~Ls~N~l~  156 (265)
                      |+.|++++|+++
T Consensus         4 L~~L~vs~N~Lt   15 (26)
T smart00364        4 LKELNVSNNQLT   15 (26)
T ss_pred             cceeecCCCccc
Confidence            344444444444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	265
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		9e-16
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		9e-16
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-07

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 80.5 bits (197), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/133 (38%), Positives = 67/133 (50%)
Query: 57  NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQ 116
           NGFT  +P    N   +  L L+   L G+I   L + + L+ L L  N L G IP +L 
Sbjct: 401 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 460
Query: 117 YXXXXXXXXXXXXXXXGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSN 176
           Y               GEIP  L+ C  LN I L +N LTG+IP+ +G L  L+   +SN
Sbjct: 461 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 520
Query: 177 NKLSGPIPASLGN 189
           N  SG IPA LG+
Sbjct: 521 NSFSGNIPAELGD 533

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 80.5 bits (197), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/133 (38%), Positives = 67/133 (50%)
Query: 57  NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQ 116
           NGFT  +P    N   +  L L+   L G+I   L + + L+ L L  N L G IP +L 
Sbjct: 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463
Query: 117 YXXXXXXXXXXXXXXXGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSN 176
           Y               GEIP  L+ C  LN I L +N LTG+IP+ +G L  L+   +SN
Sbjct: 464 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523
Query: 177 NKLSGPIPASLGN 189
           N  SG IPA LG+
Sbjct: 524 NSFSGNIPAELGD 536

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 83/183 (45%), Gaps = 10/183 (5%)
Query: 33  LSQSLKDPYKNLQNWTKSTFSNACNGFTSYLPGATCNNGRIY-KLSLTNLSLQGSISPYL 91
           LS +L     +L N    TF    N  +  +P +  +  +++  ++++   L G I P  
Sbjct: 137 LSGTLPPSISSLPNLVGITFDG--NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194
Query: 92  SNCTNLQSLDLSSNALTGSIPADLQYXXXXXXXXXXXXXXXGEIPPQLTLCAYLNVIDLH 151
           +N  NL  +DLS N L G                        ++  ++ L   LN +DL 
Sbjct: 195 ANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLR 252
Query: 152 DNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGY 211
           +N + G +PQ L  L  L + +VS N L G IP     + GNL +F+ S++  NK L G 
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-----QGGNLQRFDVSAYANNKCLCGS 307
Query: 212 PLP 214
           PLP
Sbjct: 308 PLP 310

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	265
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-39
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-33
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-31
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-28
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-27
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-26
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-24
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-38
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-35
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	9e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  144 bits (365), Expect = 2e-39
 Identities = 56/184 (30%), Positives = 82/184 (44%), Gaps = 5/184 (2%)

Query: 32  HLSQSLKDPYKNLQNWTKSTFSNACNGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYL 91
            ++       KN     +   +     F                 ++T+    G  SP  
Sbjct: 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628

Query: 92  SNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLH 151
            N  ++  LD+S N L+G IP ++  +  L +LNL  N ++G IP ++     LN++DL 
Sbjct: 629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688

Query: 152 DNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGY 211
            N L G+IPQ +  L  L+  D+SNN LSGPIP       G    F  + F  N  L GY
Sbjct: 689 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP-----EMGQFETFPPAKFLNNPGLCGY 743

Query: 212 PLPP 215
           PLP 
Sbjct: 744 PLPR 747

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  126 bits (318), Expect = 4e-33
 Identities = 54/135 (40%), Positives = 71/135 (52%), Gaps = 2/135 (1%)

Query: 57  NGFTSYLPGATCNNGR--IYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPAD 114
           N F+  +    C N +  + +L L N    G I P LSNC+ L SL LS N L+G+IP+ 
Sbjct: 378 NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS 437

Query: 115 LQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDV 174
           L  L  L  L L  N L GEIP +L     L  + L  N LTG+IP  L     L+   +
Sbjct: 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497

Query: 175 SNNKLSGPIPASLGN 189
           SNN+L+G IP  +G 
Sbjct: 498 SNNRLTGEIPKWIGR 512

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  120 bits (304), Expect = 3e-31
 Identities = 46/138 (33%), Positives = 71/138 (51%)

Query: 57  NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQ 116
           N  +  +P +  +  ++  L L    L+G I   L     L++L L  N LTG IP+ L 
Sbjct: 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487

Query: 117 YLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSN 176
              NL  ++LS NRL GEIP  +     L ++ L +N  +G IP +LG    L   D++ 
Sbjct: 488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547

Query: 177 NKLSGPIPASLGNRSGNL 194
           N  +G IPA++  +SG +
Sbjct: 548 NLFNGTIPAAMFKQSGKI 565

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  110 bits (278), Expect = 9e-28
 Identities = 45/183 (24%), Positives = 76/183 (41%), Gaps = 16/183 (8%)

Query: 20  CSSDPNDEACLTHLSQSLKDPYKNLQNWTKSTFSNACNGFTSYLPGATCNNGRIYKLSLT 79
             S   +   L      L D    L +W+ +   N C        G TC + ++  + L+
Sbjct: 7   SQSLYREIHQLISFKDVLPDKNL-LPDWSSNK--NPCT-----FDGVTCRDDKVTSIDLS 58

Query: 80  NLSLQ---GSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIP 136
           +  L     ++S  L + T L+SL LS++ + GS+    +   +L  L+LS N L+G + 
Sbjct: 59  SKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVT 117

Query: 137 PQLTL--CAYLNVIDLHDNLLTGQIPQQLGL-LVRLSAFDVSNNKLSGPIPASLGNRSGN 193
              +L  C+ L  +++  N L        GL L  L   D+S N +SG         S  
Sbjct: 118 TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWV-LSDG 176

Query: 194 LPK 196
             +
Sbjct: 177 CGE 179

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  109 bits (275), Expect = 2e-27
 Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 6/134 (4%)

Query: 57  NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQ 116
           N  +  +  + C N  +  L +++ +    I P+L +C+ LQ LD+S N L+G     + 
Sbjct: 188 NKISGDVDVSRCVN--LEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAIS 244

Query: 117 YLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQL-GLLVRLSAFDVS 175
               L +LN+S+N+  G IPP       L  + L +N  TG+IP  L G    L+  D+S
Sbjct: 245 TCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS 302

Query: 176 NNKLSGPIPASLGN 189
            N   G +P   G+
Sbjct: 303 GNHFYGAVPPFFGS 316

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  107 bits (270), Expect = 1e-26
 Identities = 46/136 (33%), Positives = 63/136 (46%), Gaps = 5/136 (3%)

Query: 57  NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLS-NCTNLQSLDLSSNALTGSIPADL 115
           N F   +P     +  +  LSL      G I  +LS  C  L  LDLS N   G++P   
Sbjct: 257 NQFVGPIPPLPLKS--LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314

Query: 116 QYLVNLAVLNLSANRLAGEIPPQ-LTLCAYLNVIDLHDNLLTGQIPQQLG-LLVRLSAFD 173
                L  L LS+N  +GE+P   L     L V+DL  N  +G++P+ L  L   L   D
Sbjct: 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374

Query: 174 VSNNKLSGPIPASLGN 189
           +S+N  SGPI  +L  
Sbjct: 375 LSSNNFSGPILPNLCQ 390

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  101 bits (254), Expect = 2e-24
 Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 7/118 (5%)

Query: 76  LSLTNLSLQGSIS-PYLSNCTNLQSLDLSSNALTGSIPADLQY---LVNLAVLNLSANRL 131
           L++++ +L             +L+ LDLS+N+++G+             L  L +S N++
Sbjct: 131 LNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI 190

Query: 132 AGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGN 189
           +G++   ++ C  L  +D+  N  +  IP  LG    L   D+S NKLSG    ++  
Sbjct: 191 SGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAIST 245

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  134 bits (341), Expect = 3e-38
 Identities = 49/186 (26%), Positives = 75/186 (40%), Gaps = 7/186 (3%)

Query: 19  LCSSDPNDEACLTHLSQSLKDPYKNLQNWTKSTFSNACNGFTSYLPGATCNNGRIYKLSL 78
           LC+    D+  L  + + L +P   L +W  +T       +   L        R+  L L
Sbjct: 2   LCNPQ--DKQALLQIKKDLGNPT-TLSSWLPTT-DCCNRTWLGVLCDTDTQTYRVNNLDL 57

Query: 79  TNLSLQGS--ISPYLSNCTNLQSLDLSS-NALTGSIPADLQYLVNLAVLNLSANRLAGEI 135
           + L+L     I   L+N   L  L +   N L G IP  +  L  L  L ++   ++G I
Sbjct: 58  SGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI 117

Query: 136 PPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLP 195
           P  L+    L  +D   N L+G +P  +  L  L       N++SG IP S G+ S    
Sbjct: 118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT 177

Query: 196 KFNASS 201
               S 
Sbjct: 178 SMTISR 183

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  128 bits (324), Expect = 1e-35
 Identities = 48/179 (26%), Positives = 76/179 (42%), Gaps = 22/179 (12%)

Query: 57  NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNL-QSLDLSSNALTGSIPADL 115
           N  +  LP +  +   +  ++     + G+I     + + L  S+ +S N LTG IP   
Sbjct: 135 NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194

Query: 116 QYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVS 175
             L NLA ++LS N L G+             I L  N L   +  ++GL   L+  D+ 
Sbjct: 195 ANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLR 252

Query: 176 NNKLSGPIPASLGN-------------------RSGNLPKFNASSFEGNKDLYGYPLPP 215
           NN++ G +P  L                     + GNL +F+ S++  NK L G PLP 
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPA 311

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 91.6 bits (228), Expect = 3e-21
 Identities = 24/147 (16%), Positives = 51/147 (34%), Gaps = 2/147 (1%)

Query: 57  NGFTSYLP-GATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPAD- 114
           +            +   +  L +++   + + +   +  ++L+ L ++ N+   +   D 
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465

Query: 115 LQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDV 174
              L NL  L+LS  +L    P      + L V+++  N            L  L   D 
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 525

Query: 175 SNNKLSGPIPASLGNRSGNLPKFNASS 201
           S N +       L +   +L   N + 
Sbjct: 526 SLNHIMTSKKQELQHFPSSLAFLNLTQ 552

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 85.1 bits (211), Expect = 6e-19
 Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 1/116 (0%)

Query: 75  KLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGE 134
            L L+   L+   S    +   LQ LDLS   +        Q L +L+ L L+ N +   
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91

Query: 135 IPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKL-SGPIPASLGN 189
                +  + L  +   +  L       +G L  L   +V++N + S  +P    N
Sbjct: 92  ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 83.5 bits (207), Expect = 2e-18
 Identities = 28/132 (21%), Positives = 42/132 (31%), Gaps = 2/132 (1%)

Query: 57  NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPY-LSNCTNLQSLDLSSNALTGSIPADL 115
                   G       +  L +   S Q +  P   +   NL  LDLS   L    P   
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490

Query: 116 QYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVR-LSAFDV 174
             L +L VLN+S N               L V+D   N +     Q+L      L+  ++
Sbjct: 491 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 550

Query: 175 SNNKLSGPIPAS 186
           + N  +      
Sbjct: 551 TQNDFACTCEHQ 562

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 80.1 bits (198), Expect = 3e-17
 Identities = 27/138 (19%), Positives = 50/138 (36%), Gaps = 5/138 (3%)

Query: 57  NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQ 116
               +   GA  +   +  L LT   +Q       S  ++LQ L      L       + 
Sbjct: 62  CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG 121

Query: 117 YLVNLAVLNLSANRLAG-EIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAF--- 172
           +L  L  LN++ N +   ++P   +    L  +DL  N +       L +L ++      
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

Query: 173 -DVSNNKLSGPIPASLGN 189
            D+S N ++   P +   
Sbjct: 182 LDLSLNPMNFIQPGAFKE 199

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 74.7 bits (184), Expect = 2e-15
 Identities = 29/156 (18%), Positives = 50/156 (32%), Gaps = 4/156 (2%)

Query: 40  PYKNLQNWTKSTFSNACNGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQS 99
           P   L++  + TF++  N   +        +     LS   LS +G  S      T+L+ 
Sbjct: 320 PTLKLKSLKRLTFTS--NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377

Query: 100 LDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQ-LTLCAYLNVIDLHDNLLTGQ 158
           LDLS N +   + ++   L  L  L+   + L              L  +D+        
Sbjct: 378 LDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 159 IPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNL 194
                  L  L    ++ N         +     NL
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 71.2 bits (175), Expect = 2e-14
 Identities = 33/173 (19%), Positives = 59/173 (34%), Gaps = 6/173 (3%)

Query: 57  NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTG-SIPADL 115
           N   S   GA      + KL     +L    +  + +   L+ L+++ N +    +P   
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 116 QYLVNLAVLNLSANRLAGEIPPQLTLCAYLNV----IDLHDNLLTGQIPQQLGLLVRLSA 171
             L NL  L+LS+N++       L +   + +    +DL  N +    P     + RL  
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHK 204

Query: 172 FDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYPLPPMKSKGLSVL 224
             + NN  S  +  +       L        E   +           +GL  L
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 32/187 (17%), Positives = 56/187 (29%), Gaps = 25/187 (13%)

Query: 30  LTHLSQSLKDPYKNLQNWTKSTFS-NACNGFTSYLPGATCNNGRIYKLSLTNLSLQGSIS 88
             +L +  K   + L N T   F     + +   +         +   SL +++++    
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD 299

Query: 89  PYLSNCTNLQSLDLSSNALT-------------------GSIPADLQYLVNLAVLNLSAN 129
              S     Q L+L +                       G        L +L  L+LS N
Sbjct: 300 --FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN 357

Query: 130 RLA--GEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASL 187
            L+  G           L  +DL  N +   +      L +L   D  ++ L      S+
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416

Query: 188 GNRSGNL 194
                NL
Sbjct: 417 FLSLRNL 423

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.4 bits (108), Expect = 9e-06
 Identities = 22/143 (15%), Positives = 37/143 (25%), Gaps = 13/143 (9%)

Query: 57  NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPY-LSNCTNLQSLDLSSNALTGSI---P 112
           N      PGA     R++KL+L N     ++    +     L+   L             
Sbjct: 187 NPMNFIQPGA-FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245

Query: 113 ADLQYLVNLAVLNLSANRL------AGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLL 166
            D   L  L  L +   RL        +I         ++   L    +           
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYN 303

Query: 167 VRLSAFDVSNNKLSGPIPASLGN 189
                 ++ N K        L +
Sbjct: 304 FGWQHLELVNCKFGQFPTLKLKS 326

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 86.2 bits (214), Expect = 3e-19
 Identities = 19/123 (15%), Positives = 46/123 (37%), Gaps = 10/123 (8%)

Query: 76  LSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRL---- 131
            +        +      N  +L  +++ +      +P  L+ L  + ++N++ NR     
Sbjct: 230 ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE 289

Query: 132 ----AGEIPPQLTLCAYLNVIDLHDN-LLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPAS 186
                 +      +   + +I +  N L T  +   L  + +L   +   N+L G +P +
Sbjct: 290 QLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A 348

Query: 187 LGN 189
            G+
Sbjct: 349 FGS 351

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 80.1 bits (198), Expect = 3e-17
 Identities = 27/153 (17%), Positives = 46/153 (30%), Gaps = 17/153 (11%)

Query: 52  FSNACNGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTG-- 109
             +        L         +  ++L+N  +        S  + L S++L  N LT   
Sbjct: 414 IGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIP 473

Query: 110 -----SIPADLQYLVNLAVLNLSANRLAGEIPPQLTLC--AYLNVIDLHDNLLTGQIPQQ 162
                    + +    L  ++L  N+L   +          YL  IDL  N  +   P Q
Sbjct: 474 KNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQ 531

Query: 163 LGLLVRLSAFDVSN------NKLSGPIPASLGN 189
                 L  F + N      N+     P  +  
Sbjct: 532 PLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL 564

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 77.4 bits (191), Expect = 3e-16
 Identities = 22/126 (17%), Positives = 43/126 (34%), Gaps = 14/126 (11%)

Query: 77  SLTNLSLQG----SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA 132
            L  L           P   +   L SL+L+ N +T        +   +  L+ + N+L 
Sbjct: 331 KLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL- 389

Query: 133 GEIPPQLTL--CAYLNVIDLHDNLLTG-------QIPQQLGLLVRLSAFDVSNNKLSGPI 183
             IP        + ++ ID   N +          +       + +S+ ++SNN++S   
Sbjct: 390 KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFP 449

Query: 184 PASLGN 189
                 
Sbjct: 450 KELFST 455

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 76.6 bits (189), Expect = 4e-16
 Identities = 26/124 (20%), Positives = 41/124 (33%), Gaps = 11/124 (8%)

Query: 75  KLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAG- 133
           ++   +      + P      N+ S++LS+N ++            L+ +NL  N L   
Sbjct: 413 EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI 472

Query: 134 ------EIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGL--LVRLSAFDVSNNKLSGPIPA 185
                 +          L  IDL  N LT  +        L  L   D+S N  S   P 
Sbjct: 473 PKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPT 530

Query: 186 SLGN 189
              N
Sbjct: 531 QPLN 534

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 72.4 bits (178), Expect = 1e-14
 Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 11/111 (9%)

Query: 85  GSISPYLSNCTNLQSLDLSSNALTGSIPADLQY--LVNLAVLNLSANRLAGEIPPQLTLC 142
              +    N   L S+DL  N LT  +  D +   L  L  ++LS N    + P Q    
Sbjct: 478 KDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSF-SKFPTQPLNS 535

Query: 143 AYLNVIDLHDNL------LTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASL 187
           + L    + +           + P+ + L   L+   + +N +   +   +
Sbjct: 536 STLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI 585

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 71.6 bits (176), Expect = 2e-14
 Identities = 14/110 (12%), Positives = 29/110 (26%), Gaps = 6/110 (5%)

Query: 91  LSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAG----EIPPQLTLCAYLN 146
           L++   +  L L     +G +P  +  L  L VL L ++          P  ++      
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 147 VIDLHDNLLTGQIPQQLGLLV--RLSAFDVSNNKLSGPIPASLGNRSGNL 194
                                   L    ++++     I  S      + 
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDT 186

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 68.9 bits (169), Expect = 2e-13
 Identities = 19/145 (13%), Positives = 49/145 (33%), Gaps = 17/145 (11%)

Query: 61  SYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQ--YL 118
                A  +  ++  L+L    +    + +      +++L  + N L   IP       +
Sbjct: 343 EGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSV 401

Query: 119 VNLAVLNLSANRLAG-------EIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSA 171
             ++ ++ S N +          + P       ++ I+L +N ++    +       LS+
Sbjct: 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSS 461

Query: 172 FDVSNNKLSG-------PIPASLGN 189
            ++  N L+            +  N
Sbjct: 462 INLMGNMLTEIPKNSLKDENENFKN 486

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 68.1 bits (167), Expect = 3e-13
 Identities = 16/153 (10%), Positives = 41/153 (26%), Gaps = 22/153 (14%)

Query: 58  GFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLS--NCTNLQSLDLSSNALTGSIPADL 115
               + P     N    +     +  Q +   Y    + ++L    ++S+    SI    
Sbjct: 120 NERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS 179

Query: 116 QYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGL---------- 165
           +  +    +   +N +   +   +     L    + ++    +   +             
Sbjct: 180 RITLKDTQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238

Query: 166 ---------LVRLSAFDVSNNKLSGPIPASLGN 189
                    L  L+  +V N      +P  L  
Sbjct: 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.8 bits (148), Expect = 8e-11
 Identities = 15/114 (13%), Positives = 36/114 (31%), Gaps = 13/114 (11%)

Query: 77  SLTNLSLQG----SISPYLSNCTNLQSL------DLSSNALTGSIPADLQYLVNLAVLNL 126
            L  + L             N + L+        D   N      P  +    +L  L +
Sbjct: 514 YLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQI 573

Query: 127 SANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
            +N +  ++  +  +   ++V+D+ DN         +   +    + +  +K  
Sbjct: 574 GSNDI-RKVNEK--ITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 82.0 bits (203), Expect = 8e-18
 Identities = 29/114 (25%), Positives = 44/114 (38%)

Query: 76  LSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEI 135
           L+LT+  L+   +   +  + L SLD+  N ++   P   Q L  L VLNL  N L+   
Sbjct: 30  LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 89

Query: 136 PPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGN 189
                 C  L  + L  N +             L   D+S+N LS     +   
Sbjct: 90  DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ 143

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 81.6 bits (202), Expect = 1e-17
 Identities = 33/156 (21%), Positives = 50/156 (32%), Gaps = 9/156 (5%)

Query: 53  SNACNGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALT---- 108
             A     S  P        +  L L+N ++       L     L+ LDL  N L     
Sbjct: 463 RVALKNVDSS-PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWK 521

Query: 109 ----GSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLG 164
               G     L+ L +L +LNL +N               L +IDL  N L         
Sbjct: 522 HANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN 581

Query: 165 LLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNAS 200
             V L + ++  N ++       G    NL + +  
Sbjct: 582 NQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR 617

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 80.8 bits (200), Expect = 2e-17
 Identities = 32/140 (22%), Positives = 53/140 (37%), Gaps = 2/140 (1%)

Query: 57  NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQ 116
           N  +            + +L L + S+Q   +       NL +LDLS N L+ +      
Sbjct: 83  NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV 142

Query: 117 YLVNLAVLNLSANRLAGEIPPQLTLCA--YLNVIDLHDNLLTGQIPQQLGLLVRLSAFDV 174
            L NL  L LS N++      +L + A   L  ++L  N +    P     + RL    +
Sbjct: 143 QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFL 202

Query: 175 SNNKLSGPIPASLGNRSGNL 194
           +N +L   +   L     N 
Sbjct: 203 NNVQLGPSLTEKLCLELANT 222

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 79.3 bits (196), Expect = 6e-17
 Identities = 28/136 (20%), Positives = 48/136 (35%), Gaps = 2/136 (1%)

Query: 56  CNGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADL 115
            N  +   P        +  L+L +  L        + CTNL  L L SN++        
Sbjct: 58  FNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPF 117

Query: 116 QYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLL--VRLSAFD 173
               NL  L+LS N L+            L  + L +N +     ++L +     L   +
Sbjct: 118 VKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 177

Query: 174 VSNNKLSGPIPASLGN 189
           +S+N++    P     
Sbjct: 178 LSSNQIKEFSPGCFHA 193

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 77.7 bits (192), Expect = 2e-16
 Identities = 30/143 (20%), Positives = 52/143 (36%), Gaps = 10/143 (6%)

Query: 57  NGFTSYLPGATCNNGRIYKLSLTNLSLQG--SISPYLSNCTNLQSLDLSSNALTGSIPAD 114
           N +      +      + +L L  ++L+   S         NL  LDLS+N +       
Sbjct: 440 NKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM 499

Query: 115 LQYLVNLAVLNLSANRL--------AGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLL 166
           L+ L  L +L+L  N L         G     L   ++L++++L  N       +    L
Sbjct: 500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 559

Query: 167 VRLSAFDVSNNKLSGPIPASLGN 189
             L   D+  N L+    +   N
Sbjct: 560 FELKIIDLGLNNLNTLPASVFNN 582

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 76.2 bits (188), Expect = 6e-16
 Identities = 23/114 (20%), Positives = 37/114 (32%)

Query: 76  LSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEI 135
           L +   ++             L+ L+L  N L+        +  NL  L+L +N +    
Sbjct: 54  LDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK 113

Query: 136 PPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGN 189
                    L  +DL  N L+         L  L    +SNNK+       L  
Sbjct: 114 NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDI 167

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 73.9 bits (182), Expect = 3e-15
 Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 1/110 (0%)

Query: 77  SLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIP 136
            L   +  G    +L   ++L  L+L SN          + L  L +++L  N L     
Sbjct: 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577

Query: 137 PQLTLCAYLNVIDLHDNLLTGQIPQQLG-LLVRLSAFDVSNNKLSGPIPA 185
                   L  ++L  NL+T    +  G     L+  D+  N       +
Sbjct: 578 SVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 73.1 bits (180), Expect = 6e-15
 Identities = 21/114 (18%), Positives = 40/114 (35%), Gaps = 3/114 (2%)

Query: 76  LSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEI 135
              ++L L   +   L   TN+  L+L+ N L     A+      L  L++  N ++   
Sbjct: 9   ADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE 65

Query: 136 PPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGN 189
           P        L V++L  N L+    +       L+   + +N +          
Sbjct: 66  PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK 119

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 73.1 bits (180), Expect = 8e-15
 Identities = 24/127 (18%), Positives = 41/127 (32%), Gaps = 3/127 (2%)

Query: 57  NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPY-LSNCTNLQSLDLSSNALTGSIPADL 115
           N  +     A    G +  L L    +   ++        N+  + LS N          
Sbjct: 391 NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF 450

Query: 116 QYLVNLAVLNLSANRLAG--EIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFD 173
             + +L  L L    L      P        L ++DL +N +       L  L +L   D
Sbjct: 451 ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILD 510

Query: 174 VSNNKLS 180
           + +N L+
Sbjct: 511 LQHNNLA 517

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 73.1 bits (180), Expect = 8e-15
 Identities = 32/140 (22%), Positives = 55/140 (39%), Gaps = 7/140 (5%)

Query: 57  NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLS--NCTNLQSLDLSSNALTGSIPAD 114
           NG +S   G       + +L L+N  +Q   S  L     ++L+ L+LSSN +    P  
Sbjct: 131 NGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC 190

Query: 115 LQYLVNLAVLNLSANRLAGEIPPQLTL---CAYLNVIDLHDNLLTGQIPQQLGLL--VRL 169
              +  L  L L+  +L   +  +L L      +  + L ++ L+         L    L
Sbjct: 191 FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNL 250

Query: 170 SAFDVSNNKLSGPIPASLGN 189
           +  D+S N L+     S   
Sbjct: 251 TMLDLSYNNLNVVGNDSFAW 270

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 72.7 bits (179), Expect = 9e-15
 Identities = 29/147 (19%), Positives = 42/147 (28%), Gaps = 14/147 (9%)

Query: 57  NGFTSYLPGATC---NNGRIYKLSLTNLSLQGSISPYLSNC--TNLQSLDLSSNALTGSI 111
                 L    C    N  I  LSL+N  L  + +        TNL  LDLS N L    
Sbjct: 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264

Query: 112 PADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNL---------LTGQIPQQ 162
                +L  L    L  N +       L     +  ++L  +          L       
Sbjct: 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS 324

Query: 163 LGLLVRLSAFDVSNNKLSGPIPASLGN 189
              L  L   ++ +N + G        
Sbjct: 325 FQWLKCLEHLNMEDNDIPGIKSNMFTG 351

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 69.6 bits (171), Expect = 1e-13
 Identities = 22/116 (18%), Positives = 43/116 (37%), Gaps = 4/116 (3%)

Query: 75  KLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGE 134
           K S++  SL             L+ L++  N + G        L+NL  L+LS +  +  
Sbjct: 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 368

Query: 135 IPPQLTLC----AYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPAS 186
                T      + L++++L  N ++         L  L   D+  N++   +   
Sbjct: 369 TLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.3 bits (152), Expect = 3e-11
 Identities = 23/146 (15%), Positives = 46/146 (31%), Gaps = 13/146 (8%)

Query: 57  NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSN---------AL 107
           N        +     ++    L   ++Q   S  L    N++ L+L  +         +L
Sbjct: 258 NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASL 317

Query: 108 TGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGL-- 165
                   Q+L  L  LN+  N + G      T    L  + L ++  + +         
Sbjct: 318 PKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVS 377

Query: 166 --LVRLSAFDVSNNKLSGPIPASLGN 189
                L   +++ NK+S     +   
Sbjct: 378 LAHSPLHILNLTKNKISKIESDAFSW 403

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.6 bits (119), Expect = 5e-07
 Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 6/118 (5%)

Query: 57  NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQ 116
           NGF         +   +  + L   +L    +   +N  +L+SL+L  N +T        
Sbjct: 546 NGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG 605

Query: 117 Y-LVNLAVLNLSANRLAGEIPPQLTLCAYLN-----VIDLHDNLLTGQIPQQLGLLVR 168
               NL  L++  N              ++N     + +L  + L    P   G  VR
Sbjct: 606 PAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVR 663

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 76.1 bits (187), Expect = 8e-16
 Identities = 23/157 (14%), Positives = 42/157 (26%), Gaps = 31/157 (19%)

Query: 76  LSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAG-- 133
            +        +     SN  +L  ++L +      +P  L  L  L  LN++ NR     
Sbjct: 472 ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA 531

Query: 134 -------EIPPQLTLCAYLNVIDLHDNLLTG-QIPQQLGLLVRLSAFDVSNNKLSGP--- 182
                   +         + +  +  N L        L  +V+L   D  +NK+      
Sbjct: 532 QLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAF 591

Query: 183 ------------------IPASLGNRSGNLPKFNASS 201
                             IP      +  +     S 
Sbjct: 592 GTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSH 628

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 73.4 bits (180), Expect = 6e-15
 Identities = 26/121 (21%), Positives = 36/121 (29%), Gaps = 11/121 (9%)

Query: 78  LTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRL------ 131
           + +     S S       N  ++ LS N +             ++ + LS N +      
Sbjct: 656 IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPEN 715

Query: 132 -AGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGL--LVRLSAFDVSNNKLSGPIPASLG 188
                         L  IDL  N LT  +        L  LS  DVS N  S   P    
Sbjct: 716 SLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPL 773

Query: 189 N 189
           N
Sbjct: 774 N 774

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 68.7 bits (168), Expect = 2e-13
 Identities = 20/124 (16%), Positives = 33/124 (26%), Gaps = 13/124 (10%)

Query: 77  SLTNLSLQG---SISPYLSNCTNLQSLDLSSNALTGSIPADL-QYLVNLAVLNLSANRLA 132
            L  L                  L  L L  N +   IP D   +   +  L  S N+L 
Sbjct: 574 KLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK 632

Query: 133 GEIPPQLTL--CAYLNVIDLHDNLLTGQIPQQLGLL-----VRLSAFDVSNNKLSGPIPA 185
             IP          +  +D   N +  +       +     +  S   +S N++      
Sbjct: 633 -YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTE 691

Query: 186 SLGN 189
               
Sbjct: 692 LFAT 695

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 66.8 bits (163), Expect = 1e-12
 Identities = 26/154 (16%), Positives = 46/154 (29%), Gaps = 25/154 (16%)

Query: 61  SYLPGATCNNGRIYKLSLTNLSLQG----SISPY--LSNCTNLQSLDLSSNALTG----- 109
             +P   C         +  L         I       +   + S+D S N +       
Sbjct: 608 EEIPEDFCAFTD----QVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI 663

Query: 110 SIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLT-------GQIPQQ 162
           S   D    +N + + LS N +           + ++ I L +NL+T             
Sbjct: 664 SCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN 723

Query: 163 LGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPK 196
                 L+  D+  NKL+  +       +  LP 
Sbjct: 724 YKNTYLLTTIDLRFNKLTS-LSDDFR--ATTLPY 754

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 63.0 bits (153), Expect = 2e-11
 Identities = 12/114 (10%), Positives = 29/114 (25%), Gaps = 6/114 (5%)

Query: 76  LSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEI 135
            ++        I            +   +N +T  I   +Q L  L ++  + +    + 
Sbjct: 406 DAINRNPEMKPIKKDSRISLKDTQIGNLTNRIT-FISKAIQRLTKLQIIYFANSPFTYDN 464

Query: 136 PPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGN 189
                        +                L  L+  ++ N      +P  L +
Sbjct: 465 I-----AVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.7 bits (142), Expect = 5e-10
 Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 1/92 (1%)

Query: 91  LSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL 150
           L N   +  L L+     G +P  +  L  L VL+   +                ++ + 
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378

Query: 151 HDNLLTGQIPQ-QLGLLVRLSAFDVSNNKLSG 181
             + +     +  L    RL+  D+  + ++ 
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR 410

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.1 bits (130), Expect = 2e-08
 Identities = 16/114 (14%), Positives = 39/114 (34%), Gaps = 13/114 (11%)

Query: 77  SLTNLSLQG----SISPYLSNCTNLQSLDL------SSNALTGSIPADLQYLVNLAVLNL 126
            L+N+ +      S      N + L++  +        N +    P  +    +L  L +
Sbjct: 754 YLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813

Query: 127 SANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
            +N +  ++     L   L ++D+ DN         +   +    + +  +K  
Sbjct: 814 GSNDI-RKVDE--KLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.4 bits (110), Expect = 4e-06
 Identities = 17/154 (11%), Positives = 39/154 (25%), Gaps = 1/154 (0%)

Query: 76  LSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEI 135
           L   N            +  N  + +   +        DL     +  L+L+     G +
Sbjct: 281 LDGKNWRYYSGTINNTIHSLNW-NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRV 339

Query: 136 PPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLP 195
           P  +     L V+    +  T          +     +   +++         +    L 
Sbjct: 340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLN 399

Query: 196 KFNASSFEGNKDLYGYPLPPMKSKGLSVLAIVGI 229
             +      N++    P+       L    I  +
Sbjct: 400 LSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNL 433

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.3 bits (107), Expect = 1e-05
 Identities = 10/78 (12%), Positives = 24/78 (30%), Gaps = 3/78 (3%)

Query: 76  LSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEI 135
                  +       ++ C +L  L + SN +   +   L     L +L+++ N      
Sbjct: 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNISID 843

Query: 136 PPQLTLCAYLNVIDLHDN 153
              +       +  L  +
Sbjct: 844 VTSVCPYIEAGMYVLLYD 861

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 75.5 bits (186), Expect = 1e-15
 Identities = 26/125 (20%), Positives = 42/125 (33%), Gaps = 1/125 (0%)

Query: 57  NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPY-LSNCTNLQSLDLSSNALTGSIPADL 115
                   G       +  L +   S + +      +N TNL  LDLS   L        
Sbjct: 434 TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF 493

Query: 116 QYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVS 175
             L  L +LN+S N L             L+ +D   N +             L+ F+++
Sbjct: 494 DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLT 553

Query: 176 NNKLS 180
           NN ++
Sbjct: 554 NNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 72.4 bits (178), Expect = 1e-14
 Identities = 24/139 (17%), Positives = 50/139 (35%), Gaps = 2/139 (1%)

Query: 64  PGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPAD-LQYLVNLA 122
             A  +  ++  L ++  + +          T+L +L ++ N+   +  ++      NL 
Sbjct: 417 FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLT 476

Query: 123 VLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGP 182
            L+LS  +L             L ++++  N L          L  LS  D S N++   
Sbjct: 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS 536

Query: 183 IPASLGNRSGNLPKFNASS 201
                     +L  FN ++
Sbjct: 537 KGILQHFPK-SLAFFNLTN 554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 70.1 bits (172), Expect = 7e-14
 Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 1/118 (0%)

Query: 73  IYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA 132
              + L+   L+   S   SN + LQ LDLS   +          L +L+ L L+ N + 
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93

Query: 133 GEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSG-PIPASLGN 189
              P   +    L  +   +  L       +G L+ L   +V++N +    +PA   N
Sbjct: 94  SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 70.1 bits (172), Expect = 7e-14
 Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 1/115 (0%)

Query: 76  LSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEI 135
           L L+   ++           +L +L L+ N +    P     L +L  L     +LA   
Sbjct: 61  LDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE 120

Query: 136 PPQLTLCAYLNVIDLHDNLLTG-QIPQQLGLLVRLSAFDVSNNKLSGPIPASLGN 189
              +     L  +++  N +   ++P     L  L   D+S N +       L  
Sbjct: 121 SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.9 bits (156), Expect = 8e-12
 Identities = 25/138 (18%), Positives = 44/138 (31%), Gaps = 5/138 (3%)

Query: 57  NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQ 116
               +    A      +  L LT   +Q       S  T+L++L      L       + 
Sbjct: 66  CEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIG 125

Query: 117 YLVNLAVLNLSANRLAG-EIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAF--- 172
            L+ L  LN++ N +   ++P   +    L  +DL  N +       L  L         
Sbjct: 126 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 185

Query: 173 -DVSNNKLSGPIPASLGN 189
            D+S N +      +   
Sbjct: 186 LDMSLNPIDFIQDQAFQG 203

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.5 bits (155), Expect = 1e-11
 Identities = 21/129 (16%), Positives = 38/129 (29%), Gaps = 6/129 (4%)

Query: 64  PGATCN---NGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVN 120
           PG+                +  L   +   +   ++ +++DLS N L             
Sbjct: 1   PGSLNPCIEVVPNITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSE 57

Query: 121 LAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
           L  L+LS   +            +L+ + L  N +    P     L  L        KL+
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117

Query: 181 GPIPASLGN 189
                 +G 
Sbjct: 118 SLESFPIGQ 126

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.1 bits (141), Expect = 6e-10
 Identities = 28/143 (19%), Positives = 48/143 (33%), Gaps = 6/143 (4%)

Query: 57  NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTG-SIPADL 115
           N   S+ PG+      +  L      L    S  +     L+ L+++ N +    +PA  
Sbjct: 90  NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYF 149

Query: 116 QYLVNLAVLNLSANRLAGEIPPQLT----LCAYLNVIDLHDNLLTGQIPQQLGLLVRLSA 171
             L NL  ++LS N +       L            +D+  N +   I  Q    ++L  
Sbjct: 150 SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHE 208

Query: 172 FDVSNNKLSGPIPASLGNRSGNL 194
             +  N  S  I  +       L
Sbjct: 209 LTLRGNFNSSNIMKTCLQNLAGL 231

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.0 bits (138), Expect = 2e-09
 Identities = 29/119 (24%), Positives = 41/119 (34%), Gaps = 7/119 (5%)

Query: 77  SLTNLSL---QGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYL--VNLAVLNLSANRL 131
            L +L+L   +GSIS       +L  LDLS NAL+ S       L   +L  L+LS N  
Sbjct: 329 FLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA 388

Query: 132 AGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQ-LGLLVRLSAFDVSNNKLSGPIPASLGN 189
              +         L  +D   + L           L +L   D+S              
Sbjct: 389 -IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG 446

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.0 bits (133), Expect = 7e-09
 Identities = 37/206 (17%), Positives = 56/206 (27%), Gaps = 24/206 (11%)

Query: 10  FLLTCAGLPLCSSDPNDEACLTHLSQSLKDPYKNLQNWTKSTFSNACNGFTSYLPGATCN 69
            L   AGL +      +     +L        + L + T   F        S        
Sbjct: 224 CLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHC 283

Query: 70  NGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALT-------------------GS 110
              +  +SL  +S+       +      QSL +    L                    GS
Sbjct: 284 LANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGS 341

Query: 111 IPADLQYLVNLAVLNLSANRLA--GEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVR 168
           I      L +L+ L+LS N L+  G           L  +DL  N     +      L  
Sbjct: 342 ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEE 400

Query: 169 LSAFDVSNNKLSGPIPASLGNRSGNL 194
           L   D  ++ L      S       L
Sbjct: 401 LQHLDFQHSTLKRVTEFSAFLSLEKL 426

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 21/133 (15%), Positives = 35/133 (26%), Gaps = 13/133 (9%)

Query: 61  SYLPGATCNNGRIYKLSLTNLSLQG----SISPYLSNCTNLQSLDLSSNALTGSIPAD-L 115
             +        R       +L +       I         L  L L  N  + +I    L
Sbjct: 166 QTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCL 225

Query: 116 QYLVNLAVLNLSANRLAGEIPPQL-------TLCA-YLNVIDLHDNLLTGQIPQQLGLLV 167
           Q L  L V  L       E   ++        LC   ++   L           +   L 
Sbjct: 226 QNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLA 285

Query: 168 RLSAFDVSNNKLS 180
            +SA  ++   + 
Sbjct: 286 NVSAMSLAGVSIK 298

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 70.4 bits (173), Expect = 5e-14
 Identities = 21/114 (18%), Positives = 34/114 (29%)

Query: 76  LSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEI 135
           L  +   L    +   S   NL  LDL+   +        Q    L  L L+AN L    
Sbjct: 38  LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMA 97

Query: 136 PPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGN 189
              L+    L  +      ++      L     L +  + +N +S         
Sbjct: 98  ETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP 151

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 70.0 bits (172), Expect = 8e-14
 Identities = 20/133 (15%), Positives = 37/133 (27%)

Query: 57  NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQ 116
           N   +           +  L LT   +         +   L +L L++N L       L 
Sbjct: 43  NVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALS 102

Query: 117 YLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSN 176
               L  L      ++      L     L  + L  N ++     +     +L   D  N
Sbjct: 103 GPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN 162

Query: 177 NKLSGPIPASLGN 189
           N +       + +
Sbjct: 163 NAIHYLSKEDMSS 175

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.9 bits (169), Expect = 2e-13
 Identities = 23/135 (17%), Positives = 46/135 (34%), Gaps = 3/135 (2%)

Query: 57  NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQ 116
                       +  R+  L LT   L       LS    L+ L      ++      L 
Sbjct: 67  CQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLH 126

Query: 117 YLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLS--AFDV 174
               L  L L +N ++    P+      L V+D  +N +     + +  L + +  + ++
Sbjct: 127 NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL 186

Query: 175 SNNKLSGPIPASLGN 189
           + N ++G I     +
Sbjct: 187 NGNDIAG-IEPGAFD 200

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 67.7 bits (166), Expect = 4e-13
 Identities = 22/128 (17%), Positives = 42/128 (32%), Gaps = 4/128 (3%)

Query: 57  NGFTSYLPGATCNNGRIYKLSLTNLSLQGSI---SPYLSNCTNLQSLDLSSNALTGSIPA 113
           +               +  L+L            +  L     L+ L LS   L+     
Sbjct: 435 SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494

Query: 114 DLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFD 173
               L  +  ++LS NRL       L+    +  ++L  N ++  +P  L +L +    +
Sbjct: 495 AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTIN 553

Query: 174 VSNNKLSG 181
           +  N L  
Sbjct: 554 LRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 66.2 bits (162), Expect = 1e-12
 Identities = 28/137 (20%), Positives = 47/137 (34%), Gaps = 3/137 (2%)

Query: 61  SYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPAD-LQYLV 119
           S LP        + KL L+    +       SN  +L  L +  N     +    L+ L 
Sbjct: 291 SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350

Query: 120 NLAVLNLSANRLA--GEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNN 177
           NL  L+LS + +        QL   ++L  ++L  N       +      +L   D++  
Sbjct: 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410

Query: 178 KLSGPIPASLGNRSGNL 194
           +L      S       L
Sbjct: 411 RLKVKDAQSPFQNLHLL 427

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 66.2 bits (162), Expect = 2e-12
 Identities = 25/136 (18%), Positives = 45/136 (33%), Gaps = 4/136 (2%)

Query: 57  NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQ 116
           + F +           + +L LT   L   +   L   + L+ L LS+N           
Sbjct: 264 HYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISAS 322

Query: 117 YLVNLAVLNLSANRLAGEIPPQ-LTLCAYLNVIDLHDNLLT--GQIPQQLGLLVRLSAFD 173
              +L  L++  N    E+    L     L  +DL  + +        QL  L  L + +
Sbjct: 323 NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLN 382

Query: 174 VSNNKLSGPIPASLGN 189
           +S N+       +   
Sbjct: 383 LSYNEPLSLKTEAFKE 398

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 1/118 (0%)

Query: 76  LSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEI 135
           LS  ++      +  L N ++LQSL+LS N          +    L +L+L+  RL  + 
Sbjct: 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD 416

Query: 136 PP-QLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSG 192
                     L V++L  +LL     Q    L  L   ++  N           +   
Sbjct: 417 AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT 474

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.9 bits (156), Expect = 8e-12
 Identities = 28/130 (21%), Positives = 42/130 (32%), Gaps = 4/130 (3%)

Query: 64  PGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIP-ADLQYLVNLA 122
                N   +  L+L+        +     C  L+ LDL+   L      +  Q L  L 
Sbjct: 369 NLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428

Query: 123 VLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGL---LVRLSAFDVSNNKL 179
           VLNLS + L             L  ++L  N       Q+      L RL    +S   L
Sbjct: 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488

Query: 180 SGPIPASLGN 189
           S     +  +
Sbjct: 489 SSIDQHAFTS 498

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 61.6 bits (150), Expect = 5e-11
 Identities = 19/145 (13%), Positives = 41/145 (28%), Gaps = 3/145 (2%)

Query: 52  FSNACNGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNC--TNLQSLDLSSNALTG 109
           F    N    +          ++  +  ++  +             +++S++L  +    
Sbjct: 209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN 268

Query: 110 SIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRL 169
                      L  L+L+A  L+ E+P  L   + L  + L  N               L
Sbjct: 269 ISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSL 327

Query: 170 SAFDVSNNKLSGPIPASLGNRSGNL 194
           +   +  N     +         NL
Sbjct: 328 THLSIKGNTKRLELGTGCLENLENL 352

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 20/122 (16%), Positives = 36/122 (29%), Gaps = 6/122 (4%)

Query: 72  RIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQY--LVNLAVLNLSAN 129
               L+L    +   I P   +    QSL+         I   L+   + +L +      
Sbjct: 180 TNLSLNLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238

Query: 130 RLAGEIPPQLTLCAYLNV--IDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASL 187
                 P        ++V  I+L  +               L   D++   LS  +P+ L
Sbjct: 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGL 297

Query: 188 GN 189
             
Sbjct: 298 VG 299

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 19/141 (13%), Positives = 37/141 (26%), Gaps = 7/141 (4%)

Query: 55  ACNGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQ--SLDLSSNALTGSIP 112
             N  +S          ++  L   N ++       +S+       SL+L+ N +   I 
Sbjct: 137 GSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-GIE 195

Query: 113 ADLQYLVNLAVLNLSANRLAGEIPPQLTLCAY--LNVIDLHDNLLTGQIPQQLGLLVRLS 170
                      LN    +    I   L       L +    D       P     L  +S
Sbjct: 196 PGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS 255

Query: 171 --AFDVSNNKLSGPIPASLGN 189
             + ++  +        +   
Sbjct: 256 VESINLQKHYFFNISSNTFHC 276

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 67.1 bits (163), Expect = 6e-13
 Identities = 33/154 (21%), Positives = 54/154 (35%), Gaps = 8/154 (5%)

Query: 30  LTHLSQSLK--DPYKNLQNWTKSTFSNACNGFTSYLPGATCNNGRIYKLSLTNLSLQGSI 87
           L +  ++L+     K +     +   +  + F             +  L L +  L   +
Sbjct: 398 LLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VL 456

Query: 88  SPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNV 147
             +L     +  LDLS N L  ++P  L  L  L VL  S N L   +   +     L  
Sbjct: 457 -CHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQE 512

Query: 148 IDLHDNLLTG-QIPQQLGLLVRLSAFDVSNNKLS 180
           + L +N L      Q L    RL   ++  N L 
Sbjct: 513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.5 bits (133), Expect = 4e-09
 Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 8/98 (8%)

Query: 77  SLTNLSLQG----SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA 132
            +T+L L      ++ P L+    L+ L  S NAL  ++   +  L  L  L L  NRL 
Sbjct: 464 LVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQ 521

Query: 133 G-EIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRL 169
                  L  C  L +++L  N L  Q       L  +
Sbjct: 522 QSAAIQPLVSCPRLVLLNLQGNSLC-QEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 43.2 bits (101), Expect = 5e-05
 Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 6/91 (6%)

Query: 57  NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPA--D 114
           N   + LP A      +  L  ++ +L+ ++   ++N   LQ L L +N L     A   
Sbjct: 473 NRLRA-LPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQ-QSAAIQP 528

Query: 115 LQYLVNLAVLNLSANRLAGEIPPQLTLCAYL 145
           L     L +LNL  N L  E   Q  L   L
Sbjct: 529 LVSCPRLVLLNLQGNSLCQEEGIQERLAEML 559

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 66.9 bits (163), Expect = 7e-13
 Identities = 37/161 (22%), Positives = 64/161 (39%), Gaps = 19/161 (11%)

Query: 30  LTHLSQSLKDPYKNLQNWTKSTFS-NACNGFTSYLPGATCNNGRIYKLSLTNLSLQGSIS 88
              +S +  D +     W K        N   S L     N     +L L  L+L  S+ 
Sbjct: 19  YNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFS--ELQLNRLNLS-SLP 75

Query: 89  PYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVI 148
             L     +  L+++ NAL  S+P       +L  L+   NRL+  +P       +L+  
Sbjct: 76  DNL--PPQITVLEITQNALI-SLPELPA---SLEYLDACDNRLS-TLPELPASLKHLD-- 126

Query: 149 DLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGN 189
            + +N LT  +P+   LL  +   +  NN+L+  +P    +
Sbjct: 127 -VDNNQLT-MLPELPALLEYI---NADNNQLTM-LPELPTS 161

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 62.7 bits (152), Expect = 2e-11
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 11/118 (9%)

Query: 77  SLTNLSLQG-SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEI 135
            L  ++     ++      T+L+ L + +N LT  +P   +   +L  L++S N L   +
Sbjct: 141 LLEYINADNNQLTMLPELPTSLEVLSVRNNQLT-FLPELPE---SLEALDVSTNLLE-SL 195

Query: 136 PPQLTLCAYL----NVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGN 189
           P       +           +N +T  IP+ +  L       + +N LS  I  SL  
Sbjct: 196 PAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 44.2 bits (104), Expect = 3e-05
 Identities = 16/94 (17%), Positives = 27/94 (28%), Gaps = 9/94 (9%)

Query: 77  SLTNLSLQG----SISPYLSNCTNLQS----LDLSSNALTGSIPADLQYLVNLAVLNLSA 128
           SL  L +      S+        + +          N +T  IP ++  L     + L  
Sbjct: 181 SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILED 239

Query: 129 NRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQ 162
           N L+  I   L+               +    QQ
Sbjct: 240 NPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 66.0 bits (161), Expect = 2e-12
 Identities = 25/156 (16%), Positives = 51/156 (32%), Gaps = 10/156 (6%)

Query: 77  SLTNLSLQG------SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANR 130
            +  L L+       + +   ++   L+ L+L  N +   +   +     L  L+LS+N+
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNK 202

Query: 131 LAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNR 190
           LA  + P+    A +  I L +N L   I + L     L  FD+  N           ++
Sbjct: 203 LA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260

Query: 191 SGNLPKFNASSFEGNKDLYGYPLPPMKSKGLSVLAI 226
           +  +      + +                       
Sbjct: 261 NQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCC 296

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 61.8 bits (150), Expect = 4e-11
 Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 10/119 (8%)

Query: 77  SLTNLSLQG----SISPY-LSNCTNLQSLDLSSNALTG-SIPADLQYLVNLAVLNLSANR 130
              N+ L       +        + +Q LDL  N +   +          L  LNL  N 
Sbjct: 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180

Query: 131 LAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGN 189
           +  ++  Q+   A L  +DL  N L   +  +      ++   + NNKL   I  +L  
Sbjct: 181 IY-DVKGQVVF-AKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRF 235

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 58.7 bits (142), Expect = 4e-10
 Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 8/121 (6%)

Query: 69  NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSA 128
           N  R     +T+ SL+ +++    +  N++ LDLS N L+    ADL     L +LNLS+
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 129 NRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLG 188
           N L       L   + L  +DL++N +      +L +   +     +NN +S  +  S G
Sbjct: 68  NVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR-VSCSRG 119

Query: 189 N 189
            
Sbjct: 120 Q 120

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.2 bits (138), Expect = 1e-09
 Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 2/95 (2%)

Query: 86  SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYL 145
           +I     N    +   ++ ++L  ++ +  Q   N+  L+LS N L+      L     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 146 NVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
            +++L  N+L       L  L  L   D++NN + 
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ 93

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 56.4 bits (136), Expect = 2e-09
 Identities = 27/154 (17%), Positives = 59/154 (38%), Gaps = 12/154 (7%)

Query: 36  SLKDPYKNLQNWTKSTFSNACNGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCT 95
           ++ +  +N   +     ++  +     L     +   + +L L+   L    +  L+  T
Sbjct: 1   AIHEIKQNGNRYKIEKVTD--SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT 58

Query: 96  NLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLL 155
            L+ L+LSSN L      DL+ L  L  L+L+ N +  E+         +  +   +N +
Sbjct: 59  KLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-ELLV----GPSIETLHAANNNI 111

Query: 156 TGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGN 189
           +     +      +    ++NNK++       G 
Sbjct: 112 SRVSCSRGQGKKNI---YLANNKITMLRDLDEGC 142

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 54.9 bits (132), Expect = 7e-09
 Identities = 22/118 (18%), Positives = 46/118 (38%), Gaps = 10/118 (8%)

Query: 77  SLTNLSLQG----SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA 132
           S+  L         +S   S     +++ L++N +T     D      +  L+L  N + 
Sbjct: 100 SIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157

Query: 133 GEIPPQL-TLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGN 189
                +L      L  ++L  N +   +  Q+ +  +L   D+S+NKL+  +     +
Sbjct: 158 TVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAF-MGPEFQS 212

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 19/126 (15%), Positives = 33/126 (26%), Gaps = 7/126 (5%)

Query: 77  SLTNLSLQG----SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA 132
            L  L L       + P   +   +  + L +N L   I   L++  NL   +L  N   
Sbjct: 192 KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

Query: 133 GEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSG 192
                         V  +    +     Q        +            +PA   +R  
Sbjct: 251 CGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE-DLPAPFADRLI 308

Query: 193 NLPKFN 198
            L +  
Sbjct: 309 ALKRKE 314

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 25/133 (18%), Positives = 51/133 (38%), Gaps = 10/133 (7%)

Query: 77  SLTNLSLQG------SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANR 130
            +  L L+       + +   ++   L+ L+L  N +   +   +     L  L+LS+N+
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNK 202

Query: 131 LAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNR 190
           LA  + P+    A +  I L +N L   I + L     L  FD+  N           ++
Sbjct: 203 LA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260

Query: 191 SGNLPKFNASSFE 203
           +  +      + +
Sbjct: 261 NQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 58.8 bits (143), Expect = 3e-10
 Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 8/121 (6%)

Query: 69  NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSA 128
           N  R     +T+ SL+ +++    +  N++ LDLS N L+    ADL     L +LNLS+
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 129 NRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLG 188
           N L       L   + L  +DL++N +      +L +   +     +NN +S  +  S G
Sbjct: 68  NVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR-VSCSRG 119

Query: 189 N 189
            
Sbjct: 120 Q 120

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 57.3 bits (139), Expect = 9e-10
 Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 2/95 (2%)

Query: 86  SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYL 145
           +I     N    +   ++ ++L  ++ +  Q   N+  L+LS N L+      L     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 146 NVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
            +++L  N+L       L  L  L   D++NN + 
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ 93

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 54.6 bits (132), Expect = 6e-09
 Identities = 23/141 (16%), Positives = 43/141 (30%), Gaps = 33/141 (23%)

Query: 77  SLTNLSLQG----SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA 132
           S+  L         +S   S     +++ L++N +T     D      +  L+L  N + 
Sbjct: 100 SIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157

Query: 133 GEIP------------------------PQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVR 168
             +                             + A L  +DL  N L   +  +      
Sbjct: 158 -TVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAG 215

Query: 169 LSAFDVSNNKLSGPIPASLGN 189
           ++   + NNKL   I  +L  
Sbjct: 216 VTWISLRNNKLVL-IEKALRF 235

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.7 bits (127), Expect = 3e-08
 Identities = 20/117 (17%), Positives = 45/117 (38%), Gaps = 12/117 (10%)

Query: 77  SLTNLSLQG---SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAG 133
            L  L+L       +  L + + L++LDL++N +      +L    ++  L+ + N ++ 
Sbjct: 59  KLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS- 112

Query: 134 EIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSG-PIPASLGN 189
            +    +       I L +N +T       G   R+   D+  N++          +
Sbjct: 113 RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.4 bits (116), Expect = 7e-07
 Identities = 18/118 (15%), Positives = 34/118 (28%), Gaps = 7/118 (5%)

Query: 77  SLTNLSLQG----SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA 132
            L  L L       + P   +   +  + L +N L   I   L++  NL   +L  N   
Sbjct: 192 KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

Query: 133 GEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNR 190
                +        V  +    +  ++  Q      +             +PA   +R
Sbjct: 251 -CGTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADR 306

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 64.2 bits (157), Expect = 3e-12
 Identities = 22/126 (17%), Positives = 47/126 (37%), Gaps = 16/126 (12%)

Query: 77  SLTNLSLQG----SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA 132
            L ++++       +   +     L++L L+ N L  ++PA +  L  L  L++ A    
Sbjct: 105 HLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPEL 163

Query: 133 GEIPPQLTLCAYLNVI---------DLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPI 183
            E+P  L                   L    +   +P  +  L  L +  + N+ LS  +
Sbjct: 164 TELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-L 221

Query: 184 PASLGN 189
             ++ +
Sbjct: 222 GPAIHH 227

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 60.7 bits (148), Expect = 5e-11
 Identities = 25/172 (14%), Positives = 50/172 (29%), Gaps = 17/172 (9%)

Query: 30  LTHLSQSLKDPYKNLQNWTK-STFSNACNGFTSYLPGA--TCNNGRIYKLSLTNLSLQGS 86
             +  ++         N       +       +                L L ++ L   
Sbjct: 38  HYNADRNRWHSAWRQANSNNPQIETRTGRALKA-TADLLEDATQPGRVALELRSVPLP-Q 95

Query: 87  ISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLN 146
                   ++LQ + + +  L   +P  +Q    L  L L+ N L   +P  +     L 
Sbjct: 96  FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLR 153

Query: 147 VIDLHD-NLLT--------GQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGN 189
            + +     LT             +   LV L +  +    +   +PAS+ N
Sbjct: 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIAN 204

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 57.3 bits (139), Expect = 8e-10
 Identities = 19/109 (17%), Positives = 39/109 (35%), Gaps = 6/109 (5%)

Query: 77  SLTNLSLQG----SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLS-ANRL 131
           +L +L ++     ++ P + +   L+ LDL       + P        L  L L   + L
Sbjct: 207 NLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL 266

Query: 132 AGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
              +P  +     L  +DL   +   ++P  +  L       V  +  +
Sbjct: 267 L-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 5/95 (5%)

Query: 77  SLTNLSLQG-----SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRL 131
            L  L L+G     +  P       L+ L L   +   ++P D+  L  L  L+L     
Sbjct: 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289

Query: 132 AGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLL 166
              +P  +       +I +  +L       +    
Sbjct: 290 LSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 24/140 (17%), Positives = 42/140 (30%), Gaps = 31/140 (22%)

Query: 77  SLTNLSLQG-----SISPYLSNCTNLQSLD--------------------LSSNALTGSI 111
              NL  QG          LS      + D                     +  AL  + 
Sbjct: 13  GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALK-AT 71

Query: 112 PADLQYL--VNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRL 169
              L+         L L +  L  + P Q    ++L  + +    L  ++P  +     L
Sbjct: 72  ADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGL 129

Query: 170 SAFDVSNNKLSGPIPASLGN 189
               ++ N L   +PAS+ +
Sbjct: 130 ETLTLARNPLRA-LPASIAS 148

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.0 bits (102), Expect = 5e-05
 Identities = 15/126 (11%), Positives = 29/126 (23%), Gaps = 23/126 (18%)

Query: 85  GSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAG----------- 133
           GS   +  + +  ++L    +         L         + +    A            
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIE 61

Query: 134 --------EIPPQLTLCAYLN--VIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPI 183
                        L          ++L    L  Q P Q   L  L    +    L   +
Sbjct: 62  TRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME-L 119

Query: 184 PASLGN 189
           P ++  
Sbjct: 120 PDTMQQ 125

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 63.7 bits (156), Expect = 7e-12
 Identities = 28/112 (25%), Positives = 57/112 (50%), Gaps = 9/112 (8%)

Query: 77  SLTNLSLQG----SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA 132
            L +L +       +SP L+N + L  L++ +N ++  I A ++ L  L +LN+ +N+++
Sbjct: 222 RLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQIS-DINA-VKDLTKLKMLNVGSNQIS 278

Query: 133 GEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIP 184
                 L   + LN + L++N L  +  + +G L  L+   +S N ++   P
Sbjct: 279 D--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 61.0 bits (149), Expect = 5e-11
 Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 9/108 (8%)

Query: 77  SLTNLSLQG----SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA 132
            LT L +       I+  + + T L+ L++ SN ++  I   L  L  L  L L+ N+L 
Sbjct: 244 QLTWLEIGTNQISDINA-VKDLTKLKMLNVGSNQIS-DISV-LNNLSQLNSLFLNNNQLG 300

Query: 133 GEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
            E    +     L  + L  N +T   P  L  L ++ + D +N  + 
Sbjct: 301 NEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 60.6 bits (148), Expect = 8e-11
 Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 9/116 (7%)

Query: 77  SLTNLSLQG---SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAG 133
           SL   +      +    ++N T L SL + +N +T   P  L  L  L  L +  N+++ 
Sbjct: 200 SLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD 257

Query: 134 EIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGN 189
                +     L ++++  N ++      L  L +L++  ++NN+L       +G 
Sbjct: 258 --INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGG 309

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.1 bits (144), Expect = 2e-10
 Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 8/111 (7%)

Query: 77  SLTNLSLQG---SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAG 133
           +L  L L     S    L+N T + SL+L +N     +   L  +  L  L ++ +++  
Sbjct: 111 NLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKD 169

Query: 134 EIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIP 184
            + P +     L  + L+ N +    P  L  L  L  F    N+++   P
Sbjct: 170 -VTP-IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP 216

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.9 bits (141), Expect = 6e-10
 Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 12/117 (10%)

Query: 77  SLTNLSLQG----SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA 132
           S+T L + G    SI   +   TNL+ L+L+ N +T   P  L  LV L  L +  N++ 
Sbjct: 45  SITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI- 100

Query: 133 GEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGN 189
                 L     L  + L+++ ++   P  L  L ++ + ++  N       + L N
Sbjct: 101 -TDISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLS-DLSPLSN 153

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 75  KLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRL 131
            L L N  L       +   TNL +L LS N +T   P  L  L  +   + +   +
Sbjct: 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 61.9 bits (151), Expect = 3e-11
 Identities = 25/116 (21%), Positives = 42/116 (36%), Gaps = 9/116 (7%)

Query: 77  SLTNLSLQG---SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAG 133
           +LTNL L          +SN  NL  L L  N ++   P  +  L  L  L    N++  
Sbjct: 288 ALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV-- 343

Query: 134 EIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGN 189
                L     +N +    N ++   P  L  L R++   +++   +        N
Sbjct: 344 SDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKAN 397

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 11/112 (9%)

Query: 77  SLTNLSLQG----SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA 132
            LT L L      +ISP L+  T L +L+L+ N L    P  +  L NL  L L  N ++
Sbjct: 266 KLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS 322

Query: 133 GEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIP 184
              P  ++    L  +  ++N ++      L  L  ++     +N++S   P
Sbjct: 323 DISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP 370

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 59.2 bits (144), Expect = 2e-10
 Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 8/112 (7%)

Query: 73  IYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA 132
           +  L    L ++ SI   +    NL  ++ S+N LT   P  L+ L  L  + ++ N++A
Sbjct: 48  VTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA 103

Query: 133 GEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIP 184
              P  L     L  + L +N +T   P  L  L  L+  ++S+N +S    
Sbjct: 104 DITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISA 151

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.8 bits (143), Expect = 3e-10
 Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 8/110 (7%)

Query: 77  SLTNLSLQGSIS--PYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGE 134
           SL  LS    ++    L+N T L+ LD+SSN ++    + L  L NL  L  + N+++  
Sbjct: 157 SLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDI 214

Query: 135 IPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIP 184
            P  L +   L+ + L+ N L       L  L  L+  D++NN++S   P
Sbjct: 215 TP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP 260

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 11/112 (9%)

Query: 77  SLTNLSLQG----SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA 132
           +LT+L L      +++P LS  T L  L L +N ++   P  L  L  L  L L+ N+L 
Sbjct: 244 NLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE 300

Query: 133 GEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIP 184
              P  ++    L  + L+ N ++   P  +  L +L      NNK+S    
Sbjct: 301 DISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSS 348

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 9/111 (8%)

Query: 77  SLTNLSLQG----SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA 132
           +LT L+L       ISP +S+ T LQ L   +N ++      L  L N+  L+   N+++
Sbjct: 310 NLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQIS 366

Query: 133 GEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPI 183
              P  L     +  + L+D   T         +   +        L  P 
Sbjct: 367 DLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPA 415

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 20/109 (18%), Positives = 32/109 (29%), Gaps = 7/109 (6%)

Query: 77  SLTNLSLQG---SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAG 133
            L  L       S    L+N TN+  L    N ++   P  L  L  +  L L+      
Sbjct: 332 KLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389

Query: 134 EIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGP 182
                    +  N +      L    P  +      +  D++ N  S  
Sbjct: 390 APVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.5 bits (124), Expect = 9e-08
 Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 10/111 (9%)

Query: 77  SLTNLSLQG---SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAG 133
           +L  L L     S    LS  T+LQ L   +  +T   P  L  L  L  L++S+N+++ 
Sbjct: 135 NLNRLELSSNTISDISALSGLTSLQQLSFGNQ-VTDLKP--LANLTTLERLDISSNKVSD 191

Query: 134 EIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIP 184
                L     L  +   +N ++   P  LG+L  L    ++ N+L     
Sbjct: 192 --ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT 238

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 60.7 bits (147), Expect = 6e-11
 Identities = 28/137 (20%), Positives = 45/137 (32%), Gaps = 11/137 (8%)

Query: 76  LSLTNLSLQG--SISPYLSNC--TNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRL 131
           L+L N+S     +    L       L+ L ++           ++    L+ L+LS N  
Sbjct: 126 LNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185

Query: 132 AGEIPPQLTLC-------AYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIP 184
            GE      LC         L + +      +G         V+L   D+S+N L     
Sbjct: 186 LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245

Query: 185 ASLGNRSGNLPKFNASS 201
           A   +    L   N S 
Sbjct: 246 APSCDWPSQLNSLNLSF 262

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 50.7 bits (121), Expect = 1e-07
 Identities = 26/124 (20%), Positives = 38/124 (30%), Gaps = 11/124 (8%)

Query: 75  KLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSI-------PADLQYLVNLAVLNLS 127
            LS+            +     L +LDLS N   G         P     L  LA+ N  
Sbjct: 153 VLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG 212

Query: 128 ANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGL-LVRLSAFDVSNNKLS---GPI 183
               +G           L  +DL  N L             +L++ ++S   L      +
Sbjct: 213 METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL 272

Query: 184 PASL 187
           PA L
Sbjct: 273 PAKL 276

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 50.3 bits (120), Expect = 2e-07
 Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 9/134 (6%)

Query: 72  RIYKLSLTNLSLQGSISPYLS---NCTNLQSLDLSSNALTGSIPADLQYLV--NLAVLNL 126
            + +L++    +   I          + LQ L L +  +TG+ P  L      +L +LNL
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 127 SANRLAGEIPPQLTLCAYLN----VIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGP 182
                A        L  +L     V+ +          +Q+ +   LS  D+S+N   G 
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188

Query: 183 IPASLGNRSGNLPK 196
                       P 
Sbjct: 189 RGLISALCPLKFPT 202

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 60.4 bits (147), Expect = 9e-11
 Identities = 29/108 (26%), Positives = 42/108 (38%), Gaps = 7/108 (6%)

Query: 77  SLTNLSLQG---SISPYLSNCTNLQSLDLSSNALTGSIPAD-LQYLVNLAVLNLSANRLA 132
            LT L LQ    + + +L N   L  +DLS N L   I       +  L  L +S NRL 
Sbjct: 227 ELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV 285

Query: 133 GEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
             +         L V+DL  N L   + +      RL    + +N + 
Sbjct: 286 -ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 16/110 (14%), Positives = 37/110 (33%), Gaps = 4/110 (3%)

Query: 73  IYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPAD-LQYLVNLAVLNLSANRL 131
            Y + +   +             N + +   ++ +   +PA  L     + +LNL+  ++
Sbjct: 23  FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQI 81

Query: 132 AGEIPPQ-LTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
             EI          +  + +  N +    P     +  L+   +  N LS
Sbjct: 82  E-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 130

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 6/113 (5%)

Query: 77  SLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIP 136
           SL + ++  ++   L+    ++ LD S N++   +   +   V L +L L  N L     
Sbjct: 187 SLFHANVSYNLLSTLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLTD--T 241

Query: 137 PQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGN 189
             L     L  +DL  N L   +      + RL    +SNN+L   +      
Sbjct: 242 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQP 293

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 15/110 (13%)

Query: 77  SLTNLSLQG----SISPYL-SNCTNLQSLDLSSNALTGSIPAD-LQYLVNLAVLNLSANR 130
            LT L L+     S+   +  N   L +L +S+N L   I  D  Q   +L  L LS+NR
Sbjct: 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNR 176

Query: 131 LAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
           L   +    +L   L   ++  NLL+      L + + +   D S+N ++
Sbjct: 177 LT-HVDL--SLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN 218

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 16/109 (14%)

Query: 77  SLTNLSLQG----SISPY-LSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRL 131
            LT LS+       I        T+LQ+L LSSN LT  +   L  + +L   N+S N L
Sbjct: 142 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSL--IPSLFHANVSYNLL 198

Query: 132 AGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
           +      L +   +  +D   N +   +     + V L+   + +N L+
Sbjct: 199 S-----TLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNNLT 239

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 60.3 bits (146), Expect = 1e-10
 Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 15/108 (13%)

Query: 94  CTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDN 153
                 L++  + LT ++P  L    ++  L +  N L   +P        L  +++  N
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLPALPP---ELRTLEVSGN 91

Query: 154 LLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASL------GNRSGNLP 195
            LT  +P     L+ LS F      L   +P+ L      GN+  +LP
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLTHLP-ALPSGLCKLWIFGNQLTSLP 137

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 58.0 bits (140), Expect = 7e-10
 Identities = 22/117 (18%), Positives = 33/117 (28%), Gaps = 20/117 (17%)

Query: 77  SLTNLSLQG----SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA 132
            L  L + G    S+         L         L             L  L +  N+L 
Sbjct: 82  ELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPS-------GLCKLWIFGNQLT 134

Query: 133 GEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGN 189
             +P        L    + DN L   +P     L +L      NN+L+  +P     
Sbjct: 135 -SLPVLPPGLQEL---SVSDNQLA-SLPALPSELCKL---WAYNNQLTS-LPMLPSG 182

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 55.7 bits (134), Expect = 4e-09
 Identities = 29/114 (25%), Positives = 42/114 (36%), Gaps = 14/114 (12%)

Query: 77  SLTNLSLQG-SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEI 135
            L  L      ++      + LQ L +S N L  S+P     L  L   N   NRL   +
Sbjct: 162 ELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLA-SLPTLPSELYKLWAYN---NRLT-SL 216

Query: 136 PPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGN 189
           P   +    L  + +  N LT  +P     L  L    VS N+L+  +P     
Sbjct: 217 PALPSG---LKELIVSGNRLT-SLPVLPSELKEL---MVSGNRLTS-LPMLPSG 262

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 50.3 bits (120), Expect = 3e-07
 Identities = 26/134 (19%), Positives = 52/134 (38%), Gaps = 5/134 (3%)

Query: 77  SLTNLSLQG-SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA--- 132
            L  L + G  ++      + L SL +  N LT  +P  L +L +   +NL  N L+   
Sbjct: 242 ELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT 300

Query: 133 GEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSG 192
            +   ++T     +   +  ++     P++   L   +A  +   +   P PA   +  G
Sbjct: 301 LQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFG 360

Query: 193 NLPKFNASSFEGNK 206
                +A S   ++
Sbjct: 361 QEDNADAFSLFLDR 374

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.1 bits (146), Expect = 1e-10
 Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 1/118 (0%)

Query: 73  IYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA 132
              L L+   L+   S    +   LQ LDLS   +        Q L +L+ L L+ N + 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 133 GEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKL-SGPIPASLGN 189
                  +  + L  +   +  L       +G L  L   +V++N + S  +P    N
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.3 bits (144), Expect = 3e-10
 Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 1/134 (0%)

Query: 57  NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQ 116
           N        +  +   +  L L+   +Q        + ++L +L L+ N +         
Sbjct: 38  NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97

Query: 117 YLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLT-GQIPQQLGLLVRLSAFDVS 175
            L +L  L      LA      +     L  +++  NL+   ++P+    L  L   D+S
Sbjct: 98  GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

Query: 176 NNKLSGPIPASLGN 189
           +NK+       L  
Sbjct: 158 SNKIQSIYCTDLRV 171

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.8 bits (140), Expect = 9e-10
 Identities = 22/114 (19%), Positives = 39/114 (34%), Gaps = 4/114 (3%)

Query: 76  LSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEI 135
           LS   LS +G  S      T+L+ LDLS N +  ++ ++   L  L  L+   + L  ++
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QM 411

Query: 136 PPQLTLC--AYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASL 187
                      L  +D+               L  L    ++ N         +
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 29/129 (22%), Positives = 48/129 (37%), Gaps = 8/129 (6%)

Query: 77  SLTNLSLQG----SISPY--LSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANR 130
            L +L  Q      +S +    +  NL  LD+S      +       L +L VL ++ N 
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456

Query: 131 LAGEIPPQ-LTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGN 189
                 P   T    L  +DL    L    P     L  L   ++++N+L   +P  + +
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS-VPDGIFD 515

Query: 190 RSGNLPKFN 198
           R  +L K  
Sbjct: 516 RLTSLQKIW 524

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 21/110 (19%), Positives = 38/110 (34%), Gaps = 6/110 (5%)

Query: 77  SLTNLSLQG----SISPY-LSNCTNLQSLDLSSNALTGSIPAD-LQYLVNLAVLNLSANR 130
           +L  L +             +  ++L+ L ++ N+   +   D    L NL  L+LS  +
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 131 LAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
           L    P      + L V+++  N L          L  L    +  N   
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.8 bits (127), Expect = 4e-08
 Identities = 26/129 (20%), Positives = 48/129 (37%), Gaps = 5/129 (3%)

Query: 57  NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQ 116
               +   GA  +   +  L LT   +Q       S  ++LQ L      L       + 
Sbjct: 62  CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG 121

Query: 117 YLVNLAVLNLSANRLA-GEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAF--- 172
           +L  L  LN++ N +   ++P   +    L  +DL  N +       L +L ++      
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

Query: 173 -DVSNNKLS 180
            D+S N ++
Sbjct: 182 LDLSLNPMN 190

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 51.6 bits (124), Expect = 8e-08
 Identities = 28/143 (19%), Positives = 52/143 (36%), Gaps = 6/143 (4%)

Query: 57  NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALT-GSIPADL 115
           N   S   GA      + KL     +L    +  + +   L+ L+++ N +    +P   
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 116 QYLVNLAVLNLSANRL----AGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSA 171
             L NL  L+LS+N++      ++     +      +DL  N +   I       +RL  
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHK 204

Query: 172 FDVSNNKLSGPIPASLGNRSGNL 194
             + NN  S  +  +       L
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGL 227

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.6 bits (116), Expect = 9e-07
 Identities = 32/181 (17%), Positives = 59/181 (32%), Gaps = 12/181 (6%)

Query: 16  GLPLCSSDPNDEACLTHLSQSLKDPYKNLQNWTKSTFSNACNGFTSYLPGATCNNGRIYK 75
           GL   + +    A L +    + D +  L N +  +  +           +     +   
Sbjct: 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS--VTIERVKDFSYNFGWQ--H 308

Query: 76  LSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEI 135
           L L N       +       +L+ L  +SN    +       L +L  L+LS N L+ + 
Sbjct: 309 LELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKG 363

Query: 136 PPQLTLCAY--LNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGN 193
               +      L  +DL  N +   +      L +L   D  ++ L      S+     N
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422

Query: 194 L 194
           L
Sbjct: 423 L 423

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 22/108 (20%), Positives = 48/108 (44%), Gaps = 6/108 (5%)

Query: 77  SLTNLSLQG----SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA 132
           ++ +L++      + +P +S  +NL+ L +    +T     +L  L +L +L++S +   
Sbjct: 67  NIKDLTINNIHATNYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125

Query: 133 GEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
             I  ++     +N IDL  N     I   L  L  L + ++  + + 
Sbjct: 126 DSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 19/115 (16%), Positives = 44/115 (38%), Gaps = 6/115 (5%)

Query: 77  SLTNLSL-QGSISP-YLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGE 134
           +  N  L Q S +    +   +L  + L++  +T  +   ++Y  N+  L ++       
Sbjct: 24  AYLNGLLGQSSTANITEAQMNSLTYITLANINVT-DLTG-IEYAHNIKDLTINNIHAT-N 80

Query: 135 IPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGN 189
             P ++  + L  + +    +T      L  L  L+  D+S++     I   +  
Sbjct: 81  YNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT 134

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 22/119 (18%), Positives = 40/119 (33%), Gaps = 5/119 (4%)

Query: 39  DPYKNLQNWTKSTFSNACNGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQ 98
           +P   L N  +          TS           +  L +++ +   SI   ++    + 
Sbjct: 82  NPISGLSNLERLRIMG--KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN 139

Query: 99  SLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTG 157
           S+DLS N     I   L+ L  L  LN+  + +       +     LN +      + G
Sbjct: 140 SIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 59.2 bits (143), Expect = 3e-10
 Identities = 29/108 (26%), Positives = 42/108 (38%), Gaps = 7/108 (6%)

Query: 77  SLTNLSLQG---SISPYLSNCTNLQSLDLSSNALTGSIPAD-LQYLVNLAVLNLSANRLA 132
            LT L LQ    + + +L N   L  +DLS N L   I       +  L  L +S NRL 
Sbjct: 233 ELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV 291

Query: 133 GEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
             +         L V+DL  N L   + +      RL    + +N + 
Sbjct: 292 -ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 50.7 bits (121), Expect = 2e-07
 Identities = 18/132 (13%), Positives = 41/132 (31%), Gaps = 10/132 (7%)

Query: 57  NGFTSYLPGATCNNGRI------YKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGS 110
                  P   C +  +      Y + +   +             N + +   ++ +   
Sbjct: 7   YNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-K 65

Query: 111 IPAD-LQYLVNLAVLNLSANRLAGEIPPQ-LTLCAYLNVIDLHDNLLTGQIPQQLGLLVR 168
           +PA  L     + +LNL+  ++  EI          +  + +  N +    P     +  
Sbjct: 66  LPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 124

Query: 169 LSAFDVSNNKLS 180
           L+   +  N LS
Sbjct: 125 LTVLVLERNDLS 136

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.4 bits (115), Expect = 1e-06
 Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 13/125 (10%)

Query: 57  NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPY-LSNCTNLQSLDLSSNALTGSIPADL 115
           N  +S   G   N  ++  LS++N +L+  I        T+LQ+L LSSN LT  +   L
Sbjct: 133 NDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSL 190

Query: 116 QYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVS 175
             + +L   N+S N L+      L +   +  +D   N +   +     + V L+   + 
Sbjct: 191 --IPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQ 240

Query: 176 NNKLS 180
           +N L+
Sbjct: 241 HNNLT 245

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 56.2 bits (136), Expect = 8e-10
 Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 9/116 (7%)

Query: 69  NNGRIYKLSLTNLSLQGS----ISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVL 124
            +    +     L         +   LS     + L LS+N +   I + L  + NL +L
Sbjct: 18  KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRIL 75

Query: 125 NLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
           +L  N +  +I     +   L  + +  N +   +   +  LV L    +SNNK++
Sbjct: 76  SLGRNLIK-KIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKIT 128

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 55.4 bits (134), Expect = 4e-09
 Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 14/116 (12%)

Query: 77  SLTNLSLQG----SISP-YLSNCTNLQSLDLSSNALTGSIPAD-LQYLVNLAVLNLSANR 130
           SLT L L G     +    L    NL  L LS N+++ ++    L    +L  L+L+ N+
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNK 251

Query: 131 LAGEIPPQLTLCAYLNVIDLHDNLLTG------QIPQQLGLLVRLSAFDVSNNKLS 180
           L  ++P  L    Y+ V+ LH+N ++         P         S   + +N + 
Sbjct: 252 LV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 10/110 (9%)

Query: 77  SLTNLSLQG----SISPY-LSNCTNLQSLDLSSNALTGSIPAD-LQYLVNLAVLNLSANR 130
               L LQ      I      N  NL +L L +N ++  I       LV L  L LS N+
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQ 111

Query: 131 LAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
           L  E+P ++     L  + +H+N +T         L ++   ++  N L 
Sbjct: 112 LK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 45.4 bits (108), Expect = 8e-06
 Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 13/121 (10%)

Query: 77  SLTNLSLQG------SISP-YLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSAN 129
            +  + L         I          L  + ++   +T +IP  L    +L  L+L  N
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGN 202

Query: 130 RLAGEIPPQ-LTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLG 188
           ++  ++    L     L  + L  N ++      L     L    ++NNKL   +P  L 
Sbjct: 203 KIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLA 260

Query: 189 N 189
           +
Sbjct: 261 D 261

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 42.3 bits (100), Expect = 8e-05
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 5/87 (5%)

Query: 95  TNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQ-LTLCAYLNVIDLHDN 153
            +   LDL +N +T     D + L NL  L L  N+++ +I P        L  + L  N
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKN 110

Query: 154 LLTGQIPQQLGLLVRLSAFDVSNNKLS 180
            L  ++P+   +   L    V  N+++
Sbjct: 111 QLK-ELPE--KMPKTLQELRVHENEIT 134

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 55.2 bits (133), Expect = 7e-09
 Identities = 28/128 (21%), Positives = 47/128 (36%), Gaps = 4/128 (3%)

Query: 57  NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPY-LSNCTNLQSLDLSSNALTGSIPADL 115
           N   +    +     ++  L L +     +I      N  NL+ LDL S+ +    P   
Sbjct: 34  NYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAF 93

Query: 116 QYLVNLAVLNLSANRLAGEIPPQLTLC--AYLNVIDLHDNLLTG-QIPQQLGLLVRLSAF 172
           Q L +L  L L    L+  +           L  +DL  N +    +    G L  L + 
Sbjct: 94  QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI 153

Query: 173 DVSNNKLS 180
           D S+N++ 
Sbjct: 154 DFSSNQIF 161

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 55.2 bits (133), Expect = 8e-09
 Identities = 28/132 (21%), Positives = 46/132 (34%), Gaps = 11/132 (8%)

Query: 56  CNGFTSYLPGATCNNGRIYKLSLTNLSLQG-SISPYLSNCTNLQSLDLSSNALTG-SIPA 113
            N   +        N     + L+   L+   I  +L    +LQ L L+ N  +  S   
Sbjct: 390 GNKLVTLPKINLTAN----LIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ 445

Query: 114 DLQYLVNLAVLNLSANRLAGEIPPQLTLCAY-----LNVIDLHDNLLTGQIPQQLGLLVR 168
                 +L  L L  N L      +L    +     L V+ L+ N L    P     L  
Sbjct: 446 TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA 505

Query: 169 LSAFDVSNNKLS 180
           L    +++N+L+
Sbjct: 506 LRGLSLNSNRLT 517

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.0 bits (130), Expect = 1e-08
 Identities = 31/166 (18%), Positives = 53/166 (31%), Gaps = 15/166 (9%)

Query: 57  NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISP--YLSNCTNLQSLDLSSNALTG-SIPA 113
           +      P A      +++L L    L  ++    Y  N   L  LDLS N +    +  
Sbjct: 83  SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP 142

Query: 114 DLQYLVNLAVLNLSANRLAGEIPPQ----LTLCAYLNVIDLHDNLLTGQIPQQLGLL--- 166
               L +L  ++ S+N++   +       L     L+   L  N L  ++    G     
Sbjct: 143 SFGKLNSLKSIDFSSNQIF-LVCEHELEPLQGK-TLSFFSLAANSLYSRVSVDWGKCMNP 200

Query: 167 ---VRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLY 209
              + L   DVS N  +  I  +  N       F+           
Sbjct: 201 FRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG 246

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 53.3 bits (128), Expect = 3e-08
 Identities = 32/173 (18%), Positives = 56/173 (32%), Gaps = 17/173 (9%)

Query: 19  LCSSDPNDEACLTHLSQSLKDPYKNLQNWTKSTFSNAC-----------NGFTSYLPGAT 67
           +  S         H+       + N+++  ++TF+                  S      
Sbjct: 228 ISKSQAFSLILAHHI-MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF 286

Query: 68  CNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLS 127
                +  L+L    +            NLQ L+LS N L     ++   L  +A ++L 
Sbjct: 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346

Query: 128 ANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
            N +A            L  +DL DN LT      +  +  +    +S NKL 
Sbjct: 347 KNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLV 394

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.5 bits (126), Expect = 5e-08
 Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 8/119 (6%)

Query: 67  TCN-NGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLN 125
           +C+ +GRI      NL+    +   L+     + L LS N +     +   +L  L +L 
Sbjct: 1   SCSFDGRIAFYRFCNLT---QVPQVLNT---TERLLLSFNYIRTVTASSFPFLEQLQLLE 54

Query: 126 LSANRLAGEIPPQ-LTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPI 183
           L +      I  +       L ++DL  + +    P     L  L    +    LS  +
Sbjct: 55  LGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAV 113

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 38/136 (27%), Positives = 56/136 (41%), Gaps = 11/136 (8%)

Query: 57  NGFTSYLPGATC-NNGRIYKLSLTNLSLQGSISPYL-----SNCTNLQSLDLSSNALTGS 110
           N F+S     T   N  + +L L    LQ +    L        ++LQ L L+ N L   
Sbjct: 436 NRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL 495

Query: 111 IPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLS 170
            P    +L  L  L+L++NRL   +     L A L ++D+  N L    P      V LS
Sbjct: 496 PPGVFSHLTALRGLSLNSNRLT-VLSHN-DLPANLEILDISRNQLLAPNPDV---FVSLS 550

Query: 171 AFDVSNNKLSGPIPAS 186
             D+++NK       S
Sbjct: 551 VLDITHNKFICECELS 566

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 27/139 (19%), Positives = 46/139 (33%), Gaps = 26/139 (18%)

Query: 77  SLTNLSLQG------SISPYLSNCTNLQSLDLSSNALTGSIPADLQYL--VNLAVLNLSA 128
           +LT L L         + P      +L+S+D SSN +      +L+ L    L+  +L+A
Sbjct: 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183

Query: 129 NRLAGEIPPQLTLCA------YLNVIDLHDNLLTGQIP------------QQLGLLVRLS 170
           N L   +      C        L ++D+  N  T  I               L L   + 
Sbjct: 184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243

Query: 171 AFDVSNNKLSGPIPASLGN 189
                 + +  P   +   
Sbjct: 244 GAGFGFHNIKDPDQNTFAG 262

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 54.2 bits (131), Expect = 9e-09
 Identities = 25/113 (22%), Positives = 38/113 (33%), Gaps = 11/113 (9%)

Query: 77  SLTNLSLQG----SISPY--LSNCTNLQSLDLSSNALTGSIPAD-LQYLVNLAVLNLSAN 129
            L +L  Q      +S +    +  NL  LD+S               L +L VL ++ N
Sbjct: 102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGN 160

Query: 130 RLAGEIPPQ-LTLCAYLNVIDLHDNLLTGQIPQQ-LGLLVRLSAFDVSNNKLS 180
                  P   T    L  +DL    L  Q+       L  L   ++S+N   
Sbjct: 161 SFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFF 212

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 51.9 bits (125), Expect = 5e-08
 Identities = 24/125 (19%), Positives = 45/125 (36%), Gaps = 8/125 (6%)

Query: 77  SLTNLSLQG----SISPY-LSNCTNLQSLDLSSNALTGSIPAD-LQYLVNLAVLNLSANR 130
           +L  L +             +  ++L+ L ++ N+   +   D    L NL  L+LS  +
Sbjct: 127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186

Query: 131 LAGEIPPQLTLC-AYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGN 189
           L  ++ P      + L V+++  N            L  L   D S N +       L +
Sbjct: 187 LE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245

Query: 190 RSGNL 194
              +L
Sbjct: 246 FPSSL 250

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 3/88 (3%)

Query: 95  TNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLC--AYLNVIDLHD 152
           ++   L+L SN L          L  L  L+LS+N L+ +     +      L  +DL  
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 153 NLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
           N +   +      L +L   D  ++ L 
Sbjct: 88  NGVI-TMSSNFLGLEQLEHLDFQHSNLK 114

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 41.9 bits (99), Expect = 8e-05
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 8/84 (9%)

Query: 77  SLTNLSLQG----SISPYLSNC-TNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRL 131
           +LT L L       +SP   N  ++LQ L++S N          + L +L VL+ S N +
Sbjct: 176 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235

Query: 132 AGEIPPQL--TLCAYLNVIDLHDN 153
                 Q      + L  ++L  N
Sbjct: 236 M-TSKKQELQHFPSSLAFLNLTQN 258

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 13/109 (11%)

Query: 77  SLTNLSLQG---SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAG 133
            L  L +        P L N + L+ +D+ +N+L   +P       +L  +    N+L  
Sbjct: 132 LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPP---SLEFIAAGNNQL-- 185

Query: 134 EIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGP 182
           E  P+L    +L  I   +N L  ++P     L  +      NN L   
Sbjct: 186 EELPELQNLPFLTAIYADNNSLK-KLPDLPLSLESI---VAGNNILEEL 230

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 27/131 (20%), Positives = 42/131 (32%), Gaps = 23/131 (17%)

Query: 76  LSLTNLSLQGSISPYLSNC--TNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAG 133
               N   +      L +C       L+L++  L+ S+P       +L  L  S N L  
Sbjct: 50  APPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPELPP---HLESLVASCNSLT- 104

Query: 134 EIPPQLTLCAYLNVIDLHDNLLTGQIPQ---------------QLGLLVRLSAFDVSNNK 178
           E+P        L V + +   L+   P                +L     L   DV NN 
Sbjct: 105 ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNS 164

Query: 179 LSGPIPASLGN 189
           L   +P    +
Sbjct: 165 LKK-LPDLPPS 174

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 30/130 (23%), Positives = 45/130 (34%), Gaps = 24/130 (18%)

Query: 77  SLTNLSLQG---SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAG 133
           SL ++          P L N   L ++   +N L  ++P     L  L V +     L  
Sbjct: 216 SLESIVAGNNILEELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLP- 273

Query: 134 EIPPQLT--------------LCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKL 179
           E+P  LT              L   L  ++   N +   +      L  L   +VSNNKL
Sbjct: 274 ELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIR-SLCDLPPSLEEL---NVSNNKL 329

Query: 180 SGPIPASLGN 189
              +PA    
Sbjct: 330 IE-LPALPPR 338

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 21/125 (16%), Positives = 39/125 (31%), Gaps = 22/125 (17%)

Query: 76  LSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAV------------ 123
              +NL+    +     N  +      + +    + P        +AV            
Sbjct: 18  RHSSNLT---EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAH 74

Query: 124 -LNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGP 182
            L L+   L   +P       +L  +    N LT ++P+    L  L   + +   LS  
Sbjct: 75  ELELNNLGL-SSLPELPP---HLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSD- 128

Query: 183 IPASL 187
           +P  L
Sbjct: 129 LPPLL 133

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 21/116 (18%), Positives = 42/116 (36%), Gaps = 19/116 (16%)

Query: 87  ISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLT------ 140
           I+P   + T LQ     S+ LT  +P + + + +      + +      PP         
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 141 -------LCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGN 189
                  L    + ++L++  L+  +P+    L  L     S N L+  +P    +
Sbjct: 62  VSRLRDCLDRQAHELELNNLGLS-SLPELPPHLESL---VASCNSLT-ELPELPQS 112

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 15/114 (13%)

Query: 77  SLTNLSLQG-SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEI 135
           +L  L+     I        +L+ L++S+N L   +PA       L  L  S N LA E+
Sbjct: 298 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EV 352

Query: 136 PPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGN 189
           P        L  + +  N L  + P     +  L      N+ L+  +P    N
Sbjct: 353 PELPQ---NLKQLHVEYNPLR-EFPDIPESVEDLR----MNSHLA-EVPELPQN 397

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 39.2 bits (92), Expect = 8e-04
 Identities = 11/80 (13%), Positives = 27/80 (33%), Gaps = 4/80 (5%)

Query: 77  SLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIP 136
           S+ +L +   ++       NL+ L + +N L    P   +   ++  L +++ R+     
Sbjct: 378 SVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPE---SVEDLRMNSERVVDPYE 433

Query: 137 PQLTLCAYLNVIDLHDNLLT 156
                   L       +   
Sbjct: 434 FAHETTDKLEDDVFEHHHHH 453

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 29/142 (20%), Positives = 56/142 (39%), Gaps = 8/142 (5%)

Query: 42  KNLQNWTKSTFSNACNGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPY-LSNCTNLQSL 100
           K L        S+    +   +         +  LS+T+ +L  ++    + +   L+ L
Sbjct: 197 KRLYRLKVLEISH--WPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFL 253

Query: 101 DLSSNALTGSIPAD-LQYLVNLAVLNLSANRLAGEIPPQ-LTLCAYLNVIDLHDNLLTGQ 158
           +LS N ++ +I    L  L+ L  + L   +LA  + P       YL V+++  N LT  
Sbjct: 254 NLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTL 311

Query: 159 IPQQLGLLVRLSAFDVSNNKLS 180
                  +  L    + +N L+
Sbjct: 312 EESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.0 bits (125), Expect = 5e-08
 Identities = 27/110 (24%), Positives = 41/110 (37%), Gaps = 7/110 (6%)

Query: 77  SLTNLSLQG----SISPY-LSNCTNLQSLDLSSNALTGSIPAD-LQYLVNLAVLNLSANR 130
           SL  L+L+     SI    LS+   L  L L    +  +I     + L  L VL +S   
Sbjct: 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWP 211

Query: 131 LAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
               + P       L  + +    LT      +  LV L   ++S N +S
Sbjct: 212 YLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.0 bits (125), Expect = 6e-08
 Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 4/126 (3%)

Query: 57  NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPAD-L 115
               +    +     R+  L +++     +++P      NL SL ++   LT ++P   +
Sbjct: 186 LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAV 244

Query: 116 QYLVNLAVLNLSANRLAGEIPPQ-LTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDV 174
           ++LV L  LNLS N ++  I    L     L  I L    L    P     L  L   +V
Sbjct: 245 RHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNV 303

Query: 175 SNNKLS 180
           S N+L+
Sbjct: 304 SGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.0 bits (125), Expect = 6e-08
 Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 9/111 (8%)

Query: 77  SLTNLSLQG----SISPY-LSNCTNLQSLDLSSNALTGSIPAD-LQYLVNLAVLNLSANR 130
           +L +L +       IS    S   +L+ L L    LT SIP + L +L  L VL L    
Sbjct: 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLN 187

Query: 131 LAGEIPPQ-LTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
           +   I          L V+++        +       + L++  +++  L+
Sbjct: 188 IN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT 237

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 11/112 (9%)

Query: 77  SLTNLSLQG----SISP-YLSNCTNLQSLDLSSNALTGSIPADL-QYLVNLAVLNLSANR 130
           +L  L L+      I     +  +NL  LD+S N +   +   + Q L NL  L +  N 
Sbjct: 81  NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDND 139

Query: 131 LAGEIPPQ-LTLCAYLNVIDLHDNLLTGQIPQQ-LGLLVRLSAFDVSNNKLS 180
           L   I  +  +    L  + L    LT  IP + L  L  L    + +  ++
Sbjct: 140 LV-YISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNIN 189

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.5 bits (108), Expect = 7e-06
 Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 2/87 (2%)

Query: 95  TNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQ-LTLCAYLNVIDLHDN 153
           T  + LDL  N +      +     +L  L L+ N ++  + P        L  + L  N
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSN 90

Query: 154 LLTGQIPQQLGLLVRLSAFDVSNNKLS 180
            L          L  L+  D+S NK+ 
Sbjct: 91  RLKLIPLGVFTGLSNLTKLDISENKIV 117

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.9 bits (127), Expect = 3e-08
 Identities = 31/118 (26%), Positives = 47/118 (39%), Gaps = 20/118 (16%)

Query: 77  SLTNLSLQG----SISPY-LSNCTNLQSLDLSSNALTGSIPAD-LQYLVNLAVLNLSANR 130
           +L +L L       IS        NL+ LDLSSN L  ++       L  L VL L  N 
Sbjct: 65  NLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNH 123

Query: 131 LAGEIPPQ----LTLCAYLNVIDLHDNLLTGQIP----QQLGLLVRLSAFDVSNNKLS 180
           +   +       +     L  + L  N ++ + P    +    L +L   D+S+NKL 
Sbjct: 124 IV-VVDRNAFEDMA---QLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 39/165 (23%), Positives = 60/165 (36%), Gaps = 14/165 (8%)

Query: 77  SLTNLSLQG----SISP--YLSNCTNLQSLDLSSNALTGSIPAD-LQYLVNLAVLNLSAN 129
               L L       +      +  TNL SL LS N L   I ++    + NL  L+LS+N
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSN 98

Query: 130 RLAGEIPPQ-LTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLG 188
            L   +     +    L V+ L++N +          + +L    +S N++S   P  L 
Sbjct: 99  HLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELI 156

Query: 189 NRSGNLPKFNASSFEGNKDLYGYPLPPMKSKGLSVLAIVGIGLGS 233
                LPK        NK      LP    + L      G+ L +
Sbjct: 157 KDGNKLPKLMLLDLSSNKLKK---LPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.9 bits (101), Expect = 5e-05
 Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 95  TNLQSLDLSSNALTGSIPAD--LQYLVNLAVLNLSANRLAGEIPPQ-LTLCAYLNVIDLH 151
           +    LDLS N L+  + A+     L NL  L LS N L   I  +       L  +DL 
Sbjct: 39  SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS 96

Query: 152 DNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
            N L          L  L    + NN + 
Sbjct: 97  SNHLHTLDEFLFSDLQALEVLLLYNNHIV 125

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 52.3 bits (126), Expect = 4e-08
 Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 16/117 (13%)

Query: 77  SLTNLSLQG----SISPY-LSNCTNLQSLDLSSNALTGSIPAD-LQYLVNLAVLNLSANR 130
           +L  L L      +I    L   + L  L L  N +   I    L +L  L  L+L  N+
Sbjct: 194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNK 252

Query: 131 LAGEIPPQLTLCAYLNVIDLHDNLLTGQIP-------QQLGLLVRLSAFDVSNNKLS 180
           L+  +P  L     L V+ LH N +T ++                 +   + NN + 
Sbjct: 253 LS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 28/116 (24%), Positives = 41/116 (35%), Gaps = 16/116 (13%)

Query: 77  SLTNLSLQG----SISPY-LSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRL 131
            L  L L       I    LS    L+ L L +N L+  +PA L  L  L V+ L  N +
Sbjct: 218 KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI 276

Query: 132 AGEIPPQ-------LTLCAYLNVIDLHDNLLT-GQIPQQLGL-LVRLSAFDVSNNK 178
             ++              AY N I L +N +   ++       +    A    N K
Sbjct: 277 T-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 12/110 (10%)

Query: 77  SLTNLSLQG----SISPYLSNCTNLQSLDLSSNALTGSIPAD-LQYLVNLAVLNLSANRL 131
            L  L +       I P L   ++L  L +  N +   +P      L N+  + +  N L
Sbjct: 103 KLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPL 159

Query: 132 A-GEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
                 P       LN + + +  LT  IP+   L   L+   + +NK+ 
Sbjct: 160 ENSGFEPGAFDGLKLNYLRISEAKLT-GIPK--DLPETLNELHLDHNKIQ 206

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 5/87 (5%)

Query: 95  TNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQ-LTLCAYLNVIDLHDN 153
            +   LDL +N ++     D + L +L  L L  N+++ +I  +  +    L  + +  N
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKN 112

Query: 154 LLTGQIPQQLGLLVRLSAFDVSNNKLS 180
            L  +IP    L   L    + +N++ 
Sbjct: 113 HLV-EIPP--NLPSSLVELRIHDNRIR 136

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 52.4 bits (125), Expect = 5e-08
 Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 9/114 (7%)

Query: 77  SLTNLSLQG----SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA 132
            L +L L       I+  LS  T L +L L  N ++  I   L  L  L  L LS N ++
Sbjct: 132 QLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHIS 188

Query: 133 GEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPAS 186
            ++   L     L+V++L       +       LV  +    ++  L  P   S
Sbjct: 189 -DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS 240

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 52.4 bits (125), Expect = 5e-08
 Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 11/108 (10%)

Query: 77  SLTNLSLQG----SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA 132
           S+  +        S+   +    N+  L L+ N LT  I   L  L NL  L L  N++ 
Sbjct: 44  SIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLT-DIK-PLTNLKNLGWLFLDENKIK 100

Query: 133 GEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
            ++   L     L  + L  N ++  I   L  L +L +  + NNK++
Sbjct: 101 -DLSS-LKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKIT 144

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 49.3 bits (117), Expect = 5e-07
 Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 8/106 (7%)

Query: 75  KLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGE 134
           K +L   S+        +   ++  +  +++ +  S+   +QYL N+  L L+ N+L  +
Sbjct: 25  KDNLKKKSVT-DAVT-QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLT-D 79

Query: 135 IPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
           I P LT    L  + L +N +   +   L  L +L +  + +N +S
Sbjct: 80  IKP-LTNLKNLGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHNGIS 122

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 45.9 bits (108), Expect = 7e-06
 Identities = 15/107 (14%), Positives = 35/107 (32%), Gaps = 11/107 (10%)

Query: 78  LTNLSLQG----SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAG 133
           +            I P           +L   ++T ++      L ++  +  + + +  
Sbjct: 1   MGETITVSTPIKQIFP-DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK- 56

Query: 134 EIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
            +   +     +  + L+ N LT  I + L  L  L    +  NK+ 
Sbjct: 57  SVQG-IQYLPNVTKLFLNGNKLT-DI-KPLTNLKNLGWLFLDENKIK 100

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.4 bits (121), Expect = 6e-08
 Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 6/85 (7%)

Query: 76  LSLTNLSLQGSISPYLSN----CTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRL 131
           +    L L+G   P + N         ++D S N +   +      L  L  L ++ NR+
Sbjct: 19  VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRI 76

Query: 132 AGEIPPQLTLCAYLNVIDLHDNLLT 156
                        L  + L +N L 
Sbjct: 77  CRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.9 bits (104), Expect = 9e-06
 Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 6/82 (7%)

Query: 77  SLTNLSLQG-SISP--YLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA- 132
               +      I           L++L +++N +        Q L +L  L L+ N L  
Sbjct: 43  QFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE 102

Query: 133 -GEIPPQLTLCAYLNVIDLHDN 153
            G++ P L     L  + +  N
Sbjct: 103 LGDLDP-LASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 3/90 (3%)

Query: 91  LSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL 150
            +N    + LDL    +   I      L     ++ S N +  ++     L   L  + +
Sbjct: 15  YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLV 71

Query: 151 HDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
           ++N +          L  L+   ++NN L 
Sbjct: 72  NNNRICRIGEGLDQALPDLTELILTNNSLV 101

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 27/129 (20%), Positives = 49/129 (37%), Gaps = 14/129 (10%)

Query: 77  SLTNLSLQG----SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA 132
           +LT+L +       +         ++ L+LSS  +   +   +     L VL++S N L 
Sbjct: 388 NLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD 444

Query: 133 GEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSG 192
                 L     L  + +  N L   +P    L   L    +S N+L   +P  + +R  
Sbjct: 445 -SFSLFLP---RLQELYISRNKLK-TLP-DASLFPVLLVMKISRNQLKS-VPDGIFDRLT 497

Query: 193 NLPKFNASS 201
           +L K    +
Sbjct: 498 SLQKIWLHT 506

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 21/144 (14%), Positives = 48/144 (33%), Gaps = 3/144 (2%)

Query: 57  NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTG-SIPADL 115
           +   +    A  + G +  L L++  L    S +    ++L+ L+L  N      + +  
Sbjct: 60  SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119

Query: 116 QYLVNLAVLNLSANRLAGEIPPQ-LTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDV 174
             L NL  L +       EI          LN +++    L     Q L  +  +    +
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179

Query: 175 SNNKLSGPIPASLGNRSGNLPKFN 198
             ++ +  +     +   ++    
Sbjct: 180 HLSESAF-LLEIFADILSSVRYLE 202

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 7/112 (6%)

Query: 75  KLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPAD-LQYLVNLAVLNLSANRLAG 133
           +L +    L   +S   S    ++ + + ++ +   +P    Q+L +L  L+LS N +  
Sbjct: 290 RLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVE 348

Query: 134 EIPPQ---LTLCAYLNVIDLHDNLLT--GQIPQQLGLLVRLSAFDVSNNKLS 180
           E             L  + L  N L    +  + L  L  L++ D+S N   
Sbjct: 349 EYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.0 bits (117), Expect = 7e-07
 Identities = 25/117 (21%), Positives = 40/117 (34%), Gaps = 8/117 (6%)

Query: 77  SLTNLSLQG----SISPY-LSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRL 131
           ++ +L L       I    L  C NLQ L L S+ +          L +L  L+LS N L
Sbjct: 27  AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86

Query: 132 AGEIPPQ-LTLCAYLNVIDLHDNLLTG-QIPQQLGLLVRLSAFDVSNNKLSGPIPAS 186
           +  +        + L  ++L  N      +      L  L    + N +    I   
Sbjct: 87  S-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI 142

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.6 bits (116), Expect = 8e-07
 Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 2/87 (2%)

Query: 95  TNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQ-LTLCAYLNVIDLHDN 153
             ++SLDLS N +T     DL+   NL VL L ++R+   I          L  +DL DN
Sbjct: 26  AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDN 84

Query: 154 LLTGQIPQQLGLLVRLSAFDVSNNKLS 180
            L+       G L  L   ++  N   
Sbjct: 85  HLSSLSSSWFGPLSSLKYLNLMGNPYQ 111

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.4 bits (100), Expect = 8e-05
 Identities = 18/116 (15%), Positives = 39/116 (33%), Gaps = 1/116 (0%)

Query: 75  KLSLTNLSLQGSISP-YLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAG 133
            L + N+     I     +  T+L  L++ + +L       L+ + ++  L L  +  A 
Sbjct: 127 TLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF 186

Query: 134 EIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGN 189
            +     + + +  ++L D  L       L +    S       + S     S   
Sbjct: 187 LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 242

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 3/83 (3%)

Query: 75  KLSLTNLSLQ-GSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAG 133
           +L L N     G I    +   NL+ L L +  L  S+ ++L  L  L  L LS NR+ G
Sbjct: 28  ELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFG 85

Query: 134 EIPPQLTLCAYLNVIDLHDNLLT 156
            +         L  ++L  N L 
Sbjct: 86  GLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 5/81 (6%)

Query: 75  KLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA-- 132
            LSL N+ L  S+S  L     L+ L+LS N + G +    + L NL  LNLS N+L   
Sbjct: 53  FLSLINVGLI-SVSN-LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDI 110

Query: 133 GEIPPQLTLCAYLNVIDLHDN 153
             + P L     L  +DL + 
Sbjct: 111 STLEP-LKKLECLKSLDLFNC 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 4/105 (3%)

Query: 75  KLSLTNLSLQ-GSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAG 133
           +L L N     G +         L+ L   +  LT SI A+L  L  L  L LS NR++G
Sbjct: 21  ELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSG 78

Query: 134 EIPPQLTLCAYLNVIDLHDNLLTG-QIPQQLGLLVRLSAFDVSNN 177
            +      C  L  ++L  N +      + L  L  L + D+ N 
Sbjct: 79  GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.3 bits (105), Expect = 5e-06
 Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 13/103 (12%)

Query: 62  YLPGATCNNGRIYKL-----SLTNLSLQG----SISPYLSNCTNLQSLDLSSNALTGSIP 112
            L  +  N G++  L      L  LS       SI+  L     L+ L+LS N ++G + 
Sbjct: 23  VLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN-LPKLNKLKKLELSDNRVSGGLE 81

Query: 113 ADLQYLVNLAVLNLSANRLA--GEIPPQLTLCAYLNVIDLHDN 153
              +   NL  LNLS N++     I P L     L  +DL + 
Sbjct: 82  VLAEKCPNLTHLNLSGNKIKDLSTIEP-LKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 3/89 (3%)

Query: 93  NCTNLQSLDLSSNALT-GSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLH 151
             ++++ L L ++    G +         L  L+     L   I   L     L  ++L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIA-NLPKLNKLKKLELS 72

Query: 152 DNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
           DN ++G +         L+  ++S NK+ 
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 11/117 (9%)

Query: 77  SLTNLSLQG----SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA 132
           +L  L L      +ISP L+  TNLQ L + +  ++  +   L  L  L  L    N+++
Sbjct: 130 NLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVS-DLTP-LANLSKLTTLKADDNKIS 186

Query: 133 GEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGN 189
            +I P L     L  + L +N ++   P  L     L    ++N  ++        N
Sbjct: 187 -DISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNN 239

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.1 bits (115), Expect = 9e-07
 Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 11/108 (10%)

Query: 77  SLTNLSLQG----SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA 132
            +T LS  G    +I   +    NL  L+L  N +T  +   L+ L  +  L LS N L 
Sbjct: 42  GITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLK 98

Query: 133 GEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
             +   +     +  +DL    +T   P  L  L  L    +  N+++
Sbjct: 99  -NVSA-IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQIT 142

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 19/106 (17%), Positives = 48/106 (45%), Gaps = 8/106 (7%)

Query: 75  KLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGE 134
           K++    ++  +++   ++   + +L      +T +I   +QYL NL  L L  N++  +
Sbjct: 23  KIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKDNQIT-D 77

Query: 135 IPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
           + P L     +  ++L  N L       +  L  +   D+++ +++
Sbjct: 78  LAP-LKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQIT 120

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 7/94 (7%)

Query: 87  ISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLN 146
           I P      N   +    + +T ++      L  +  L+     +   I   +     L 
Sbjct: 12  IFP-DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEG-VQYLNNLI 66

Query: 147 VIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
            ++L DN +T   P  L  L +++  ++S N L 
Sbjct: 67  GLELKDNQITDLAP--LKNLTKITELELSGNPLK 98

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.4 bits (118), Expect = 5e-07
 Identities = 28/112 (25%), Positives = 39/112 (34%), Gaps = 10/112 (8%)

Query: 77  SLTNLSLQG----SISPY-LSNCTNLQSLDLSSNALTGSIPAD-LQYLVNLAVLNLSANR 130
            L  L L      +I     +   NL +L+L  N LT +IP     YL  L  L L  N 
Sbjct: 89  HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNP 147

Query: 131 LAGEIPPQL-TLCAYLNVIDL-HDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
           +   IP         L  +DL     L+         L  L   +++   L 
Sbjct: 148 IE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 5/105 (4%)

Query: 77  SLTNLSLQG-SIS--PYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAG 133
           +L  L+L   ++   P L+    L  LDLS N L+   P   Q L++L  L +  +++  
Sbjct: 186 NLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ- 244

Query: 134 EIPPQ-LTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNN 177
            I          L  I+L  N LT         L  L    + +N
Sbjct: 245 VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.1 bits (112), Expect = 3e-06
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 2/87 (2%)

Query: 95  TNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQ-LTLCAYLNVIDLHDN 153
           TN + L+L  N +        ++L +L +L LS N +   I        A LN ++L DN
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDN 122

Query: 154 LLTGQIPQQLGLLVRLSAFDVSNNKLS 180
            LT         L +L    + NN + 
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNPIE 149

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 20/106 (18%), Positives = 42/106 (39%), Gaps = 8/106 (7%)

Query: 75  KLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGE 134
                   +Q + +        L SLD  ++++T  +   ++ L  L  L  ++N +   
Sbjct: 22  SEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMT-GIEKLTGLTKLICTSNNIT-T 78

Query: 135 IPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
           +   L+    L  +    N LT  +   +  L +L+  +   NKL+
Sbjct: 79  LD--LSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT 119

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 11/112 (9%)

Query: 69  NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSA 128
           +N ++ +L              ++  T L +LD S N +T     D+     L  LN   
Sbjct: 146 HNTQLTELDCHLNKK--ITKLDVTPQTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDT 200

Query: 129 NRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
           N +  ++   L     L  +D   N LT +I   +  L +L+ FD S N L+
Sbjct: 201 NNIT-KLD--LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT 246

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 19/123 (15%), Positives = 42/123 (34%), Gaps = 10/123 (8%)

Query: 69  NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSA 128
           +N ++             +   +++ T L  LD  +  +T  +  DL     L  L L+ 
Sbjct: 273 HNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT-EL--DLSQNPKLVYLYLNN 327

Query: 129 NRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLG 188
             L  E+   ++    L  +   +  +       +G +  L+    +  +       +L 
Sbjct: 328 TELT-ELD--VSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTITMPKETLT 382

Query: 189 NRS 191
           N S
Sbjct: 383 NNS 385

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 8/90 (8%)

Query: 91  LSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL 150
           ++  T L  L+  +N LT     D+     L  LN + N L  EI   ++    L  +D 
Sbjct: 102 VTPLTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDC 155

Query: 151 HDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
           H N    ++   +    +L+  D S NK++
Sbjct: 156 HLNKKITKLD--VTPQTQLTTLDCSFNKIT 183

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 7/106 (6%)

Query: 77  SLTNLSLQG-SIS--PYLSNCTNLQSLDLSSNALTGSIPAD-LQYLVNLAVLNLSANRLA 132
           +L  L+L   +I   P L+    L+ L++S N     I       L +L  L +  ++++
Sbjct: 197 NLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVS 255

Query: 133 GEIPPQ-LTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNN 177
             I        A L  ++L  N L+         L  L    + +N
Sbjct: 256 -LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 46.3 bits (110), Expect = 5e-06
 Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 12/112 (10%)

Query: 77  SLTNLSLQG----SISPY-LSNCTNLQSLDLSSNALTGSIPAD-LQYLVNLAVLNLS-AN 129
           SL  L L       I        + L+ L L +N +  SIP+     + +L  L+L    
Sbjct: 124 SLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELK 182

Query: 130 RLAGEIPPQ-LTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
           +L   I          L  ++L    +   +P  L  LV L   ++S N   
Sbjct: 183 KLE-YISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFP 231

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 2/87 (2%)

Query: 95  TNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQ-LTLCAYLNVIDLHDN 153
           +N + L+L  N +        ++L +L VL L  N +  +I        A LN ++L DN
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDN 133

Query: 154 LLTGQIPQQLGLLVRLSAFDVSNNKLS 180
            LT         L +L    + NN + 
Sbjct: 134 WLTVIPSGAFEYLSKLRELWLRNNPIE 160

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 9/114 (7%)

Query: 77  SLTNLSLQG----SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA 132
            L +L L       I+  LS  T L +L L  N ++  I   L  L  L  L LS N ++
Sbjct: 135 QLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHIS 191

Query: 133 GEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPAS 186
            ++   L     L+V++L       +       LV  +    ++  L  P   S
Sbjct: 192 -DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS 243

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 45.4 bits (108), Expect = 7e-06
 Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 11/108 (10%)

Query: 77  SLTNLSLQG----SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA 132
           S+  +        S+   +    N+  L L+ N LT  I   L  L NL  L L  N++ 
Sbjct: 47  SIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLT-DIK-PLANLKNLGWLFLDENKVK 103

Query: 133 GEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
            ++   L     L  + L  N ++      L  L +L +  + NNK++
Sbjct: 104 -DLSS-LKDLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKIT 147

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 23/108 (21%), Positives = 48/108 (44%), Gaps = 8/108 (7%)

Query: 73  IYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA 132
             K +L   S+        +   ++  +  +++ +  S+   +QYL N+  L L+ N+L 
Sbjct: 26  TIKDNLKKKSVT-DAVT-QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLT 81

Query: 133 GEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
            +I P L     L  + L +N +   +   L  L +L +  + +N +S
Sbjct: 82  -DIKP-LANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGIS 125

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 14/94 (14%), Positives = 32/94 (34%), Gaps = 7/94 (7%)

Query: 87  ISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLN 146
           I             +L   ++T ++      L ++  +  + + +   +   +     + 
Sbjct: 17  IFS-DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQYLPNVT 71

Query: 147 VIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
            + L+ N LT  I   L  L  L    +  NK+ 
Sbjct: 72  KLFLNGNKLT-DIK-PLANLKNLGWLFLDENKVK 103

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 9/108 (8%)

Query: 77  SLTNLSLQG----SISPY-LSNCTNLQSLDLSSNALTGSIPAD-LQYLVNLAVLNLSANR 130
           +L  L LQ     ++      +  NL  L L  N ++ S+P    + L +L  L L  NR
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNR 188

Query: 131 LAGEIPPQ-LTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNN 177
           +A  + P        L  + L  N L+    + L  L  L    +++N
Sbjct: 189 VA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 27/111 (24%), Positives = 36/111 (32%), Gaps = 8/111 (7%)

Query: 77  SLTNLSLQG----SISPY-LSNCTNLQSLDLSSNALTGSIPAD-LQYLVNLAVLNLSANR 130
           +   + L G     +       C NL  L L SN L   I A     L  L  L+LS N 
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNA 91

Query: 131 LAGEIPPQ-LTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
               + P        L+ + L    L    P     L  L    + +N L 
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 28/116 (24%), Positives = 40/116 (34%), Gaps = 6/116 (5%)

Query: 67  TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNL 126
            C N      S     LQ ++   +      Q + L  N ++    A  +   NL +L L
Sbjct: 7   VCYNEPKVTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWL 63

Query: 127 SANRLAGEIPPQ-LTLCAYLNVIDLHDNLLTGQIPQQ-LGLLVRLSAFDVSNNKLS 180
            +N LA  I     T  A L  +DL DN     +       L RL    +    L 
Sbjct: 64  HSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.1 bits (107), Expect = 9e-06
 Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 3/86 (3%)

Query: 95  TNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNL 154
            +   L LS N L     A L     L  LNL    L  ++    TL   L  +DL  N 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGTLPV-LGTLDLSHNQ 88

Query: 155 LTGQIPQQLGLLVRLSAFDVSNNKLS 180
           L   +P     L  L+  DVS N+L+
Sbjct: 89  LQ-SLPLLGQTLPALTVLDVSFNRLT 113

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 28/106 (26%), Positives = 40/106 (37%), Gaps = 13/106 (12%)

Query: 57  NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISP-YLSNCTNLQSLDLSSNALTGSIPADL 115
           N   S LP        +  L ++   L  S+    L     LQ L L  N L  ++P  L
Sbjct: 87  NQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGL 143

Query: 116 -QYLVNLAVLNLSANRLAGEIPP----QLTLCAYLNVIDLHDNLLT 156
                 L  L+L+ N L  E+P      L     L+ + L +N L 
Sbjct: 144 LTPTPKLEKLSLANNNLT-ELPAGLLNGLEN---LDTLLLQENSLY 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 33/113 (29%), Positives = 45/113 (39%), Gaps = 16/113 (14%)

Query: 77  SLTNLSLQG----SISP-YLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRL 131
             T L L      + S   L   T L  L+L    LT  +  D   L  L  L+LS N+L
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGT-LPVLGTLDLSHNQL 89

Query: 132 AGEIPPQLTLCAYLNVIDLHDNLLTGQIP----QQLGLLVRLSAFDVSNNKLS 180
              +P        L V+D+  N LT  +P    + LG L  L    +  N+L 
Sbjct: 90  Q-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELY---LKGNELK 137

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 20/116 (17%), Positives = 44/116 (37%), Gaps = 4/116 (3%)

Query: 75  KLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGE 134
            L+++   +    +  + + + L+ L +S N +     +  ++   L  L+LS N+L   
Sbjct: 25  ILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI 84

Query: 135 IPPQLTLCAYLNVIDLHDNLLTG-QIPQQLGLLVRLSAFDVSNNKLSGPIPASLGN 189
                     L  +DL  N      I ++ G + +L    +S   L       + +
Sbjct: 85  SCHPTV---NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 4/96 (4%)

Query: 95  TNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNL 154
                L++S N ++    +D+  L  L +L +S NR+             L  +DL  N 
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 155 LTGQIPQQLGLLVRLSAFDVSNNKL-SGPIPASLGN 189
           L          L  L   D+S N   + PI    GN
Sbjct: 81  LVKISCHPTVNLKHL---DLSFNAFDALPICKEFGN 113

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 9/119 (7%)

Query: 75  KLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRL--- 131
             + T    +       S  +    LD S+N LT ++  +  +L  L  L L  N+L   
Sbjct: 304 IKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL 363

Query: 132 --AGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQL-GLLVRLSAFDVSNNKLSGPIPASL 187
               E+  Q+     L  +D+  N ++    +        L + ++S+N L+  I   L
Sbjct: 364 SKIAEMTTQMK---SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 20/164 (12%), Positives = 48/164 (29%), Gaps = 4/164 (2%)

Query: 41  YKNLQNWTKSTFSNACNGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSL 100
           +  +  ++ S               +  +   +    + +       S      +N+   
Sbjct: 246 HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIK 305

Query: 101 DLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIP 160
           + + +            +     L+ S N L   +         L  + L  N L  ++ 
Sbjct: 306 NFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELS 364

Query: 161 QQLGL---LVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASS 201
           +   +   +  L   D+S N +S        + + +L   N SS
Sbjct: 365 KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 34/153 (22%), Positives = 54/153 (35%), Gaps = 32/153 (20%)

Query: 56  CNGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPAD- 114
            +G                 L  +N  L  ++     + T L++L L  N L   +    
Sbjct: 309 VSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIA 367

Query: 115 --------LQYL-------------------VNLAVLNLSANRLAGEIPPQLTLCAYLNV 147
                   LQ L                    +L  LN+S+N L   I   L     + V
Sbjct: 368 EMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKV 425

Query: 148 IDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
           +DLH N +   IP+Q+  L  L   +V++N+L 
Sbjct: 426 LDLHSNKIK-SIPKQVVKLEALQELNVASNQLK 457

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 39.5 bits (92), Expect = 8e-04
 Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 6/99 (6%)

Query: 57  NGFTSYLPGATCNN-GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADL 115
           N  +       C+    +  L++++  L  +I   L     ++ LDL SN +  SIP  +
Sbjct: 384 NSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQV 440

Query: 116 QYLVNLAVLNLSANRLAGEIPPQ-LTLCAYLNVIDLHDN 153
             L  L  LN+++N+L   +P         L  I LH N
Sbjct: 441 VKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTN 478

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 9/111 (8%)

Query: 77  SLTNLSLQG----SISP-YLSNCTNLQSLDLSSNALTGSIPADL-QYLVNLAVLNLSANR 130
           S  NL L       +      +   LQ LDLS   +  +I     Q L +L+ L L+ N 
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 87

Query: 131 LAGEIPPQL-TLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
           +   +     +  + L  +   +  L       +G L  L   +V++N + 
Sbjct: 88  IQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 33/109 (30%), Positives = 47/109 (43%), Gaps = 8/109 (7%)

Query: 75  KLSLTNLSLQGSISP-YLSNCTNLQSLDLSSNALTGSIPA-DLQYLVNLAV----LNLSA 128
           +L++ +  +Q    P Y SN TNL+ LDLSSN +  SI   DL+ L  + +    L+LS 
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 129 NRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNN 177
           N +   I P       L  + L  N L          L  L    +  N
Sbjct: 187 NPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 14/93 (15%)

Query: 95  TNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPP----QLTLCAYLNVIDL 150
            + ++LDLS N L             L VL+LS   +   I       L+   +L+ + L
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLS---HLSTLIL 83

Query: 151 HDNLLT---GQIPQQLGLLVRLSAFDVSNNKLS 180
             N +          L  L +L         L+
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKL---VAVETNLA 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.3 bits (104), Expect = 2e-05
 Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 4/96 (4%)

Query: 86  SISPYLSNCTNLQSLDLSSNALTGSIPA-DLQYLVNLAVLNLSANRLAGEIPPQ-LTLCA 143
               +L    NL  L + +      +   DL+ L  L  L +  + L   + P       
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 144 YLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKL 179
            L+ ++L  N L   +  +    + L    +S N L
Sbjct: 81  RLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.4 bits (99), Expect = 8e-05
 Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 9/87 (10%)

Query: 77  SLTNLSLQG-----SISPY-LSNCTNLQSLDLSSNALTGSIPAD-LQYLVNLAVLNLSAN 129
           +LT L ++       +    L     L++L +  + L   +  D   +   L+ LNLS N
Sbjct: 32  NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSFN 90

Query: 130 RLAGEIPPQLTLCAYLNVIDLHDNLLT 156
            L   +  +      L  + L  N L 
Sbjct: 91  ALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 40.9 bits (95), Expect = 2e-04
 Identities = 15/88 (17%), Positives = 26/88 (29%), Gaps = 2/88 (2%)

Query: 94  CTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQ-LTLCAYLNVIDLHD 152
                 L  + +         L    NL  L +   +    +  + L     L  + +  
Sbjct: 7   PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 153 NLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
           + L    P       RLS  ++S N L 
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALE 93

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 12/108 (11%)

Query: 77  SLTNLSLQG----SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA 132
            + N +       S++  +   TNL+ L LS N ++  +   L+ L  L  L+++ NRL 
Sbjct: 42  GVQNFNGDNSNIQSLAG-MQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNRLK 98

Query: 133 GEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
             +    + C  L+ + L +N L       L  L  L    + NNKL 
Sbjct: 99  -NLNGIPSAC--LSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLK 141

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 28/127 (22%)

Query: 77  SLTNLSLQG----SISPYLSNCTNLQSLDLSSNALTG-------------------SIPA 113
           +L  L L       +SP L + T L+ L ++ N L                         
Sbjct: 64  NLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTD 122

Query: 114 DLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFD 173
            L +L NL +L++  N+L   I   L   + L V+DLH N +T      L  L +++  D
Sbjct: 123 SLIHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWID 178

Query: 174 VSNNKLS 180
           ++  K  
Sbjct: 179 LTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 7/84 (8%)

Query: 77  SLTNLSLQG----SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA 132
           +L  LS++     SI   L   + L+ LDL  N +T +    L  L  +  ++L+  +  
Sbjct: 129 NLEILSIRNNKLKSIVM-LGFLSKLEVLDLHGNEIT-NTG-GLTRLKKVNWIDLTGQKCV 185

Query: 133 GEIPPQLTLCAYLNVIDLHDNLLT 156
            E           N +   D    
Sbjct: 186 NEPVKYQPELYITNTVKDPDGRWI 209

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 15/98 (15%), Positives = 29/98 (29%), Gaps = 8/98 (8%)

Query: 95  TNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPP----QLTLCAYLNVIDL 150
            ++  +DLS N++          L +L  L +        I       L+    L ++ L
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS---LIILKL 86

Query: 151 HDNLLTGQIPQQLGLLVRLSAFDVSNNKL-SGPIPASL 187
             N            L  L    ++   L    +  + 
Sbjct: 87  DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNF 124

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 31/136 (22%), Positives = 47/136 (34%), Gaps = 27/136 (19%)

Query: 40  PYKNLQNWTKSTFSNACNGFTSYLPGATCNNGRIYKLS---------LTNLSLQG----S 86
            + N ++    TF                +  +I+ L          L  L+L       
Sbjct: 257 GHTNFKDPDNFTFKGLEASGVKTC---DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK 313

Query: 87  ISPY-LSNCTNLQSLDLSSNALTGSIPADL-QYLVNLAVLNLSANRLAGEIPPQ----LT 140
           I        T+L  L+LS N L  SI + + + L  L VL+LS N +   +  Q    L 
Sbjct: 314 IDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHI-RALGDQSFLGLP 371

Query: 141 LCAYLNVIDLHDNLLT 156
               L  + L  N L 
Sbjct: 372 N---LKELALDTNQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.4 bits (100), Expect = 9e-05
 Identities = 23/127 (18%), Positives = 41/127 (32%), Gaps = 10/127 (7%)

Query: 77  SLTNLSLQG----SISPY-LSNCTNLQSLDLSSNALTGSIPADL-QYLVNLAVLNLSANR 130
            +  + L       ++    S   +LQ L +        I  +  + L +L +L L  N+
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 131 LAGEIPPQ-LTLCAYLNVIDLHDNLLTGQI--PQQLGLLVRLSAFDVSNNKLSGPIPASL 187
              ++        A L V+ L    L G +        L  L    + +N +    PAS 
Sbjct: 91  FL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 188 GNRSGNL 194
                  
Sbjct: 150 FLNMRRF 156

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 39.3 bits (92), Expect = 9e-04
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 10/89 (11%)

Query: 77  SLTNLSLQG----SISPY-LSNCTNLQSLDLSSNALTGS-IPADL-QYLVNLAVLNLSAN 129
           SL  L L       +     +   NL+ L L+   L G+ +  +  + L +L +L L  N
Sbjct: 80  SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139

Query: 130 RLAGEIPPQLTLC--AYLNVIDLHDNLLT 156
            +  +I P          +V+DL  N + 
Sbjct: 140 NIK-KIQPASFFLNMRRFHVLDLTFNKVK 167

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 11/90 (12%)

Query: 95  TNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPP----QLTLCAYLNVIDL 150
              ++L LS N+++     D+ +L  L VL LS NR+   +             L  +D+
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQD---LEYLDV 107

Query: 151 HDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
             N L   I      +  L   D+S N   
Sbjct: 108 SHNRLQN-IS--CCPMASLRHLDLSFNDFD 134

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 19/135 (14%), Positives = 40/135 (29%), Gaps = 5/135 (3%)

Query: 57  NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQ 116
             F             +    L+             + ++   L+ + N  T S+     
Sbjct: 315 QVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCS 374

Query: 117 YLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDN----LLTGQIPQQLGLLVRLSAF 172
            L  L  L L  N L         +   ++ ++  D     L +    +       +   
Sbjct: 375 TLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL 433

Query: 173 DVSNNKLSGPIPASL 187
           ++S+N L+G +   L
Sbjct: 434 NLSSNMLTGSVFRCL 448

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.2 bits (99), Expect = 9e-05
 Identities = 17/110 (15%), Positives = 34/110 (30%), Gaps = 5/110 (4%)

Query: 76  LSLTNLSLQGSISP-----YLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANR 130
           L++ NL++   I         +   +L    + +     S  A       + +  LS + 
Sbjct: 281 LNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD 340

Query: 131 LAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
                       +    ++   N+ T  + Q    L RL    +  N L 
Sbjct: 341 TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 7/122 (5%)

Query: 35  QSLKDPYKNLQNWTK-STFSNACNGFTSYLPGATCNN-GRIYKLSLTNLSLQGSISPYLS 92
           ++        +N +   T   + N   S+    TC     I  L+L++  L GS+   L 
Sbjct: 390 KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP 449

Query: 93  NCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPP-QLTLCAYLNVIDLH 151
               ++ LDL +N +  SIP D+ +L  L  LN+++N+L   +P         L  I LH
Sbjct: 450 --PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLH 505

Query: 152 DN 153
           DN
Sbjct: 506 DN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 8/93 (8%)

Query: 91  LSNCTNLQSLDLSSNALTGSIPADL-QYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVID 149
           +S  + L+ L LS N +  S+   +  +  +L  L++S NRL   I         L  +D
Sbjct: 72  ISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQ-NISCCPMAS--LRHLD 127

Query: 150 LHDNLLTGQIPQ--QLGLLVRLSAFDVSNNKLS 180
           L  N     +P   + G L +L+   +S  K  
Sbjct: 128 LSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFR 159

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 15/114 (13%)

Query: 77  SLTNLSLQG----SISP-YLSNCTNLQSLDLSSNALTGSIPADL-QYLVNLAVLNLSANR 130
           ++T + L+      I P   S    L+ +DLS+N ++  +  D  Q L +L  L L  N+
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNK 91

Query: 131 LAGEIPP----QLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180
           +  E+P      L     L ++ L+ N +          L  L+   + +NKL 
Sbjct: 92  IT-ELPKSLFEGLFS---LQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ 141

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 43.2 bits (102), Expect = 4e-05
 Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 6/103 (5%)

Query: 95  TNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQL--TLCAYLNVIDLHD 152
             ++SLDLS+N +T    +DLQ  VNL  L L++N +   I      +L + L  +DL  
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGS-LEHLDLSY 109

Query: 153 NLLTGQIPQQL-GLLVRLSAFDVSNNKLSGPIPASLGNRSGNL 194
           N L+  +       L  L+  ++  N        SL +    L
Sbjct: 110 NYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL 151

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 19/118 (16%), Positives = 38/118 (32%), Gaps = 10/118 (8%)

Query: 77  SLTNLSLQG----SISPY-LSNCTNLQSLDLSSNALTGSIPADL-QYLVNLAVLNLSANR 130
           S   L L      +I  +  SN  N+  + +S +     + +     L  +  + +   R
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 131 LAGEIPPQ-LTLCAYLNVIDLHDNLLTGQIPQQ--LGLLVRLSAFDVSNNKLSGPIPA 185
               I P  L     L  + + +  L    P    +         ++++N     IP 
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 42.2 bits (98), Expect = 9e-05
 Identities = 18/108 (16%), Positives = 37/108 (34%), Gaps = 21/108 (19%)

Query: 77  SLTNLSLQGSISPYLSNCT--------------NLQSLDLSSNALTGSIPADL---QYLV 119
           +L  L L   +  Y  +                NL+ L +        +         L 
Sbjct: 220 NLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILP 279

Query: 120 NLAVLNLSANRL----AGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQL 163
            L  +++SA  L    A  +   +    +L  I++  N L+ ++ ++L
Sbjct: 280 QLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKEL 327

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 9e-05
 Identities = 36/213 (16%), Positives = 65/213 (30%), Gaps = 59/213 (27%)

Query: 8   LFFLLTCAGLPLCSSDPNDEACLTHLSQSLKD-----PYKN----LQN-WTKST---FSN 54
           L + +            N +  +  +   L+      PY+N    L N         F+ 
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264

Query: 55  AC--------NGFTSYLPGATCNNGRI--YKLSLT---NLSLQGSISPYLSNCTNLQSLD 101
           +C           T +L  AT  +  +  + ++LT     SL       L    + +  D
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-------LLKYLDCRPQD 317

Query: 102 LSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIP-----PQLTLCAYLNVIDLHDNLLT 156
           L    LT + P           L++ A  +   +        +       +I+   N+L 
Sbjct: 318 LPREVLTTN-P--------RR-LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367

Query: 157 GQIPQQLGLLVRLSAF--DVSNNKLSGPIPASL 187
               ++  +  RLS F            IP  L
Sbjct: 368 PAEYRK--MFDRLSVFPPSA-------HIPTIL 391

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 25/132 (18%), Positives = 44/132 (33%), Gaps = 27/132 (20%)

Query: 76  LSLTNLSLQG---------SISPYLSNCTNLQSLDLSSNALTG----SIPADLQYLVNLA 122
            S+   SL+          S+   L    +++ + LS N +       +  ++    +L 
Sbjct: 4   FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63

Query: 123 VLNLSAN---RLAGEIPPQ-------LTLCAYLNVIDLHDNLLTGQIPQQLGLLVR---- 168
           +   S     R+  EIP         L  C  L+ + L DN       + L   +     
Sbjct: 64  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 123

Query: 169 LSAFDVSNNKLS 180
           L    + NN L 
Sbjct: 124 LEHLYLHNNGLG 135

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	265
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.93
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.88
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.86
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.86
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.84
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.84
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.84
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.84
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.83
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.83
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.82
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.8
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.8
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.79
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.79
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.78
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.77
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.76
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.76
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.76
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.75
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.75
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.75
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.75
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.74
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.74
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.74
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.74
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.73
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.73
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.73
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.73
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.73
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.72
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.72
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.72
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.72
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.71
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.71
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.7
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.7
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.7
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.7
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.7
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.7
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.7
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.69
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.69
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.68
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.68
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.67
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.67
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.67
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.67
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.66
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.66
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.66
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.66
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.65
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.65
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.64
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.64
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.64
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.64
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.64
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.64
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.63
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.63
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.63
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.63
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.63
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.63
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.63
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.63
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.63
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.62
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.62
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.62
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.62
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.62
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.61
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.61
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.61
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.61
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.61
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.61
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.6
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.6
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.59
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.59
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.59
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.58
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.58
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.56
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.56
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.56
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.55
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.55
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.55
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.54
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.53
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.51
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.51
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.51
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.5
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.48
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.48
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.48
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.47
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.47
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.46
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.45
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.45
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.44
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.43
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.43
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.42
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.41
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.38
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.37
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.36
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.34
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.32
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.32
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.32
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.22
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.22
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.19
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.08
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.93
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.8
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.78
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.72
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.7
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.65
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.62
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.58
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.51
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.51
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.45
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.28
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.16
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.08
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.97
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.91
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.83
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.66
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.5
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	97.36
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.2
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	97.1
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.04
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.96
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.81
2jwa_A	44	Receptor tyrosine-protein kinase ERBB-2; transmemb	96.76
2k1k_A	38	Ephrin type-A receptor 1; EPHA1, receptor tyrosine	96.63
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.5
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.48
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.38
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.15
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.06
2knc_A	54	Integrin alpha-IIB; transmembrane signaling, prote	91.38
2klu_A	70	T-cell surface glycoprotein CD4; cell membrane, di	91.18
2l8s_A	54	Integrin alpha-1; transmembrane region, detergent	88.83
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	87.37
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	85.01
1iij_A	35	ERBB-2 receptor protein-tyrosine kinase; alpha-hel	84.9
2klu_A	70	T-cell surface glycoprotein CD4; cell membrane, di	84.58

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.93  E-value=9.6e-26  Score=194.87  Aligned_cols=176  Identities=28%  Similarity=0.533  Sum_probs=155.8

Q ss_pred             CCChhHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeecC----CCeEEEEeeCCCccc--cCCccCcCC
Q 024632           21 SSDPNDEACLTHLSQSLKDPYKNLQNWTKSTFSNACNGFTSYLPGATCNN----GRIYKLSLTNLSLQG--SISPYLSNC   94 (265)
Q Consensus        21 ~~~~~~~~~l~~~~~~l~~~~~~~~~w~~~~~~~~c~~~~~~~~~~~~~~----~~l~~L~L~~n~l~~--~~p~~l~~l   94 (265)
                      .|.++|.++|.+||+++.+|. .+.+|...  .++|.   +.|.|+.|..    .+|+.|++++|.+++  .+|..+..+
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~--~~~C~---~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l   75 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPT--TDCCN---RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANL   75 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCCTT--SCTTT---TCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGC
T ss_pred             CCCHHHHHHHHHHHHhcCCcc-cccCCCCC--CCCCc---CCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCC
Confidence            477899999999999998876 78899763  36775   2499999974    689999999999998  899999999


Q ss_pred             CCCCEEECcC-CCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEE
Q 024632           95 TNLQSLDLSS-NALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFD  173 (265)
Q Consensus        95 ~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  173 (265)
                      ++|++|++++ |.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  155 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT  155 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred             CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence            9999999995 999999999999999999999999999989999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCCChhhhccCCCCC-CCCCCCCCCCC
Q 024632          174 VSNNKLSGPIPASLGNRSGNLP-KFNASSFEGNK  206 (265)
Q Consensus       174 l~~N~l~g~~p~~~~~~~~~l~-~l~~~~~~~N~  206 (265)
                      +++|++++.+|..+..    ++ .++.+++++|.
T Consensus       156 L~~N~l~~~~p~~l~~----l~~~L~~L~L~~N~  185 (313)
T 1ogq_A          156 FDGNRISGAIPDSYGS----FSKLFTSMTISRNR  185 (313)
T ss_dssp             CCSSCCEEECCGGGGC----CCTTCCEEECCSSE
T ss_pred             CcCCcccCcCCHHHhh----hhhcCcEEECcCCe
Confidence            9999999999998887    44 56666666664

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.88  E-value=4.9e-23  Score=197.79  Aligned_cols=119  Identities=40%  Similarity=0.677  Sum_probs=66.8

Q ss_pred             CCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcc
Q 024632           96 NLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVS  175 (265)
Q Consensus        96 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~  175 (265)
                      +|+.||+++|+++|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.||+++|+++|.+|..+..+++|++||++
T Consensus       633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls  712 (768)
T 3rgz_A          633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS  712 (768)
T ss_dssp             CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred             cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECc
Confidence            34444444444444455445555555555555555555555555555555555555555555555555555555555555


Q ss_pred             cCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 024632          176 NNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYPLPPMKSK  219 (265)
Q Consensus       176 ~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~~~~~~~~~~  219 (265)
                      +|+++|.+|..     +.+..+...+|.||+.+||.|+++|...
T Consensus       713 ~N~l~g~iP~~-----~~~~~~~~~~~~gN~~Lcg~~l~~C~~~  751 (768)
T 3rgz_A          713 NNNLSGPIPEM-----GQFETFPPAKFLNNPGLCGYPLPRCDPS  751 (768)
T ss_dssp             SSEEEEECCSS-----SSGGGSCGGGGCSCTEEESTTSCCCCSC
T ss_pred             CCcccccCCCc-----hhhccCCHHHhcCCchhcCCCCcCCCCC
Confidence            55555555432     2355667778999999999988766443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.86  E-value=1.7e-22  Score=195.42  Aligned_cols=179  Identities=20%  Similarity=0.268  Sum_probs=147.3

Q ss_pred             CCCChhHHHHHHHHHHhCCCCCCCCCCCCCCC---CCCC--CCCCCCCC------------Cceeec-CCCeEEEEeeCC
Q 024632           20 CSSDPNDEACLTHLSQSLKDPYKNLQNWTKST---FSNA--CNGFTSYL------------PGATCN-NGRIYKLSLTNL   81 (265)
Q Consensus        20 ~~~~~~~~~~l~~~~~~l~~~~~~~~~w~~~~---~~~~--c~~~~~~~------------~~~~~~-~~~l~~L~L~~n   81 (265)
                      ++...+|..||.+||+++.+|     +|+..+   ..++  |+     |            +|+.|+ -.+|+.|+|+++
T Consensus       264 ~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~-----W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~  333 (876)
T 4ecn_A          264 TAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLN-----WNFNKELDMWGDQPGVDLDNNGRVTGLSLAGF  333 (876)
T ss_dssp             CCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCS-----CCCSSCGGGTTCCTTEEECTTSCEEEEECTTT
T ss_pred             cccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccc-----cccccccccccCcCceEecCCCCEEEEECccC
Confidence            344557999999999999876     676543   1245  76     7            999997 478999999999


Q ss_pred             CccccCCccCcCCCCCCEEEC-cCCCCCCC--------------------------------------------------
Q 024632           82 SLQGSISPYLSNCTNLQSLDL-SSNALTGS--------------------------------------------------  110 (265)
Q Consensus        82 ~l~~~~p~~l~~l~~L~~L~L-s~N~l~~~--------------------------------------------------  110 (265)
                      ++.|.+|+.++++++|+.|+| ++|.++|.                                                  
T Consensus       334 ~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~  413 (876)
T 4ecn_A          334 GAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE  413 (876)
T ss_dssp             CCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTT
T ss_pred             CCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcc
Confidence            999999999999999999999 77754333                                                  


Q ss_pred             --------------------------CCCCcccCcccceeccccccCCC-----------------CCchHhh--hCCcC
Q 024632          111 --------------------------IPADLQYLVNLAVLNLSANRLAG-----------------EIPPQLT--LCAYL  145 (265)
Q Consensus       111 --------------------------~p~~l~~l~~L~~L~Ls~N~l~~-----------------~~p~~~~--~l~~L  145 (265)
                                                +|..++++++|++|+|++|.+++                 .+|..++  ++++|
T Consensus       414 ~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L  493 (876)
T 4ecn_A          414 MKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDL  493 (876)
T ss_dssp             SCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTC
T ss_pred             ccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCC
Confidence                                      77788899999999999999997                 3888877  99999


Q ss_pred             CEEEccCccCcccCChhccCCCCCCEEEcccCC-CCC-CCChhhhccC---CCCCCCCCCCCCCCCCC
Q 024632          146 NVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNK-LSG-PIPASLGNRS---GNLPKFNASSFEGNKDL  208 (265)
Q Consensus       146 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~-l~g-~~p~~~~~~~---~~l~~l~~~~~~~N~~~  208 (265)
                      ++|++++|++.+.+|..++.+++|+.|++++|+ ++| .+|..++++.   ..++.|+.+++++|...
T Consensus       494 ~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~  561 (876)
T 4ecn_A          494 TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE  561 (876)
T ss_dssp             CEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred             CEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence            999999999999999999999999999999998 988 8888777532   33456777777777643

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.86  E-value=4.4e-22  Score=191.21  Aligned_cols=161  Identities=25%  Similarity=0.349  Sum_probs=115.2

Q ss_pred             cCCCCCChhHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeecCCCeEEEEeeCCCcccc---CCccCcC
Q 024632           17 LPLCSSDPNDEACLTHLSQSLKDPYKNLQNWTKSTFSNACNGFTSYLPGATCNNGRIYKLSLTNLSLQGS---ISPYLSN   93 (265)
Q Consensus        17 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~w~~~~~~~~c~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~---~p~~l~~   93 (265)
                      ++++++.++|++||++||+.+.+|. .+.+|...  .++|.     |.|+.|+..+|+.|+|+++.+.|.   +|+.+.+
T Consensus         4 ~~~~~~~~~~~~all~~k~~~~~~~-~l~~W~~~--~~~C~-----w~gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~   75 (768)
T 3rgz_A            4 ASPSQSLYREIHQLISFKDVLPDKN-LLPDWSSN--KNPCT-----FDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLS   75 (768)
T ss_dssp             ----CCHHHHHHHHHHHHTTCSCTT-SSTTCCTT--SCGGG-----STTEEEETTEEEEEECTTSCCCEEHHHHHHHTTT
T ss_pred             CccccCCHHHHHHHHHHHhhCCCcc-cccCCCCC--CCCcC-----CcceEECCCcEEEEECCCCCcCCccCccChhHhc
Confidence            4445567889999999999999988 89999753  36886     999999988999999999999987   7766666


Q ss_pred             CCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCch--HhhhCCcCCEEEccCccCcccCChhc-cCCCCCC
Q 024632           94 CTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPP--QLTLCAYLNVIDLHDNLLTGQIPQQL-GLLVRLS  170 (265)
Q Consensus        94 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~  170 (265)
                      +++|+.++++.|.+. .+|+.++.+++|++|+|++|.++|.+|.  .++++++|++|++++|.+++.+|..+ ..+++|+
T Consensus        76 L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~  154 (768)
T 3rgz_A           76 LTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE  154 (768)
T ss_dssp             CTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCS
T ss_pred             cCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCC
Confidence            666666666666654 3555666666677777776666666666  66666666666666666666666544 5566666


Q ss_pred             EEEcccCCCCCCCChh
Q 024632          171 AFDVSNNKLSGPIPAS  186 (265)
Q Consensus       171 ~L~l~~N~l~g~~p~~  186 (265)
                      +|++++|.+++..|..
T Consensus       155 ~L~Ls~n~l~~~~~~~  170 (768)
T 3rgz_A          155 VLDLSANSISGANVVG  170 (768)
T ss_dssp             EEECCSSCCEEETHHH
T ss_pred             EEECCCCccCCcCChh
Confidence            6666666666555544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.86  E-value=3.2e-22  Score=188.35  Aligned_cols=178  Identities=19%  Similarity=0.212  Sum_probs=148.3

Q ss_pred             ChhHHHHHHHHHHhCCCCCCC--------CCCCCCCCCCCCCCCCCCCC---CceeecC-CCeEEEEeeCCCccccCCcc
Q 024632           23 DPNDEACLTHLSQSLKDPYKN--------LQNWTKSTFSNACNGFTSYL---PGATCNN-GRIYKLSLTNLSLQGSISPY   90 (265)
Q Consensus        23 ~~~~~~~l~~~~~~l~~~~~~--------~~~w~~~~~~~~c~~~~~~~---~~~~~~~-~~l~~L~L~~n~l~~~~p~~   90 (265)
                      ...|.+||.++++++.++...        ..+|+..  .++|.     |   +|+.|+. .+|+.|+|+++++.|.+|+.
T Consensus        28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~--~~~c~-----w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~  100 (636)
T 4eco_A           28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFN--KELDM-----WGAQPGVSLNSNGRVTGLSLEGFGASGRVPDA  100 (636)
T ss_dssp             HHHHHHHHHHHHHHTTGGGCCCCC------CCCCCS--SCGGG-----TTCCTTEEECTTCCEEEEECTTSCCEEEECGG
T ss_pred             HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCC--CCccc-----ccCCCCeEEcCCCCEEEEEecCcccCCcCChH
Confidence            346889999999998765433        2379853  36776     8   9999964 58999999999999999999


Q ss_pred             CcCCCCCCEEECcCCCC---------------------------------------------------------------
Q 024632           91 LSNCTNLQSLDLSSNAL---------------------------------------------------------------  107 (265)
Q Consensus        91 l~~l~~L~~L~Ls~N~l---------------------------------------------------------------  107 (265)
                      ++++++|+.|+|++|.+                                                               
T Consensus       101 l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~  180 (636)
T 4eco_A          101 IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR  180 (636)
T ss_dssp             GGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCC
T ss_pred             HhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccc
Confidence            99999999999998843                                                               


Q ss_pred             ---------------CCCCCCCcccCcccceeccccccCCCC-----------------CchHhh--hCCcCCEEEccCc
Q 024632          108 ---------------TGSIPADLQYLVNLAVLNLSANRLAGE-----------------IPPQLT--LCAYLNVIDLHDN  153 (265)
Q Consensus       108 ---------------~~~~p~~l~~l~~L~~L~Ls~N~l~~~-----------------~p~~~~--~l~~L~~L~Ls~N  153 (265)
                                     +| +|..++++++|++|+|++|.+++.                 +|..++  ++++|++|++++|
T Consensus       181 ~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n  259 (636)
T 4eco_A          181 ITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC  259 (636)
T ss_dssp             CCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECC
T ss_pred             cchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCC
Confidence                           34 788899999999999999999975                 899988  9999999999999


Q ss_pred             cCcccCChhccCCCCCCEEEcccCC-CCC-CCChhhhcc--CCCCCCCCCCCCCCCCCC
Q 024632          154 LLTGQIPQQLGLLVRLSAFDVSNNK-LSG-PIPASLGNR--SGNLPKFNASSFEGNKDL  208 (265)
Q Consensus       154 ~l~~~~p~~~~~l~~L~~L~l~~N~-l~g-~~p~~~~~~--~~~l~~l~~~~~~~N~~~  208 (265)
                      ++.+.+|..++++++|++|++++|+ ++| .+|..++++  ...++.++.+++++|...
T Consensus       260 ~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~  318 (636)
T 4eco_A          260 PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK  318 (636)
T ss_dssp             TTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred             cCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence            9999999999999999999999998 998 899888762  011266777777777643

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.84  E-value=2.6e-20  Score=155.67  Aligned_cols=150  Identities=20%  Similarity=0.193  Sum_probs=128.7

Q ss_pred             CCCCCCCCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCc
Q 024632           57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIP  136 (265)
Q Consensus        57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  136 (265)
                      |.+.+..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+
T Consensus        45 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  124 (251)
T 3m19_A           45 TGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS  124 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcCh
Confidence            44455455567788999999999999998777778999999999999999996666778899999999999999997666


Q ss_pred             hHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCCC
Q 024632          137 PQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYG  210 (265)
Q Consensus       137 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~  210 (265)
                      ..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..|..+..    ++.++.+++++|++.|.
T Consensus       125 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~----l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          125 GVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR----LGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT----CTTCCEEECCSCCBCTT
T ss_pred             hHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhC----CCCCCEEEeeCCceeCC
Confidence            66788999999999999999666667899999999999999999766666665    78899999999998886

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.84  E-value=8.6e-21  Score=155.73  Aligned_cols=138  Identities=18%  Similarity=0.170  Sum_probs=125.2

Q ss_pred             CCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEc
Q 024632           71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL  150 (265)
Q Consensus        71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  150 (265)
                      +++++|++++|.+++..+..+..+++|++|+|++|.+++..|..|..+++|++|+|++|.++...+..+..+++|++|++
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence            57999999999999777778999999999999999999777899999999999999999999665566789999999999


Q ss_pred             cCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCCCCC
Q 024632          151 HDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYP  212 (265)
Q Consensus       151 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~~~  212 (265)
                      ++|++++..|..|..+++|+.|++++|++++..+..+..    ++.++.+++++|++.|.+.
T Consensus       112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~----l~~L~~L~L~~N~~~c~c~  169 (220)
T 2v9t_B          112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP----LRAIQTMHLAQNPFICDCH  169 (220)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT----CTTCCEEECCSSCEECSGG
T ss_pred             CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhC----CCCCCEEEeCCCCcCCCCc
Confidence            999999888899999999999999999999776666766    8889999999999999764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.84  E-value=8.2e-22  Score=170.14  Aligned_cols=152  Identities=32%  Similarity=0.490  Sum_probs=97.1

Q ss_pred             CCCCCCceeecCCCeEEEEeeCCCccccCCccCcCCC-CCCEEECcCCCCCCCCCCC-----------------------
Q 024632           59 FTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCT-NLQSLDLSSNALTGSIPAD-----------------------  114 (265)
Q Consensus        59 ~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~-----------------------  114 (265)
                      +.+..|..+..+++|++|++++|.+++.+|..+..++ +|++|++++|.+++.+|..                       
T Consensus       137 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~  216 (313)
T 1ogq_A          137 LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVL  216 (313)
T ss_dssp             EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGG
T ss_pred             cCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHH
Confidence            3334555556666666666666666666666666665 6666666666655544444                       


Q ss_pred             cccCcccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCC
Q 024632          115 LQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNL  194 (265)
Q Consensus       115 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l  194 (265)
                      +..+++|+.|++++|.+++.+|. +..+++|++|++++|++++.+|..+..+++|+.|++++|+++|.+|.. .    .+
T Consensus       217 ~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~----~l  290 (313)
T 1ogq_A          217 FGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-G----NL  290 (313)
T ss_dssp             CCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-T----TG
T ss_pred             HhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-c----cc
Confidence            44455555555555555543333 455566666666666666666666666777777777777777666654 2    37


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCC
Q 024632          195 PKFNASSFEGNKDLYGYPLPPM  216 (265)
Q Consensus       195 ~~l~~~~~~~N~~~c~~~~~~~  216 (265)
                      +.++.+++.+|+++||.|++.|
T Consensus       291 ~~L~~l~l~~N~~lc~~p~~~C  312 (313)
T 1ogq_A          291 QRFDVSAYANNKCLCGSPLPAC  312 (313)
T ss_dssp             GGSCGGGTCSSSEEESTTSSCC
T ss_pred             cccChHHhcCCCCccCCCCCCC
Confidence            7888889999999999877654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.84  E-value=3.3e-20  Score=153.13  Aligned_cols=137  Identities=20%  Similarity=0.186  Sum_probs=122.6

Q ss_pred             CCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEc
Q 024632           71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL  150 (265)
Q Consensus        71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  150 (265)
                      +++++|++++|.+++..|..+..+++|++|+|++|.++...+..+..+++|++|+|++|.+++..+..+..+++|++|++
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  119 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM  119 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence            57999999999999888888999999999999999998555566789999999999999999777777899999999999


Q ss_pred             cCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCCCCC
Q 024632          151 HDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYP  212 (265)
Q Consensus       151 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~~~  212 (265)
                      ++|+++ .+|..+..+++|+.|++++|++++..+..+..    ++.++.+++++|++.|.++
T Consensus       120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~----l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDR----LSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTT----CTTCCEEECTTSCBCTTBG
T ss_pred             cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhC----CCCCCEEEeeCCCccCCcc
Confidence            999999 88999999999999999999999665555655    8889999999999998763

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.83  E-value=2e-20  Score=153.53  Aligned_cols=138  Identities=14%  Similarity=0.119  Sum_probs=125.0

Q ss_pred             CCeEEEEeeCCCccccCC-ccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEE
Q 024632           71 GRIYKLSLTNLSLQGSIS-PYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVID  149 (265)
Q Consensus        71 ~~l~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  149 (265)
                      ..+++|++++|.+++..+ ..+..+++|++|++++|.+++..+..|..+++|++|+|++|.+++..+..+..+++|++|+
T Consensus        32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  111 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM  111 (220)
T ss_dssp             TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred             CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence            356899999999997644 4588999999999999999976677899999999999999999988888899999999999


Q ss_pred             ccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCCCCC
Q 024632          150 LHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYP  212 (265)
Q Consensus       150 Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~~~  212 (265)
                      +++|++++..|..+..+++|+.|++++|++++..|..+..    ++.++.+++++|++.|.++
T Consensus       112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~----l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT----LHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTT----CTTCCEEECCSCCEECSGG
T ss_pred             CCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcC----CCCCCEEEecCcCCcCCCc
Confidence            9999999888999999999999999999999888888877    8889999999999998764

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.83  E-value=3.3e-21  Score=167.46  Aligned_cols=160  Identities=17%  Similarity=0.273  Sum_probs=97.2

Q ss_pred             CCCCChhHHHHHHHHHHhC-CCCCCCCCCCC---CCCCCCCCCCCCCCCCceeec----------CCCeEEEEeeCCCcc
Q 024632           19 LCSSDPNDEACLTHLSQSL-KDPYKNLQNWT---KSTFSNACNGFTSYLPGATCN----------NGRIYKLSLTNLSLQ   84 (265)
Q Consensus        19 ~~~~~~~~~~~l~~~~~~l-~~~~~~~~~w~---~~~~~~~c~~~~~~~~~~~~~----------~~~l~~L~L~~n~l~   84 (265)
                      ..++..+|.++|.+||..+ .++......|.   ... .+.|+     |.|+.|.          .+++++|++++|.++
T Consensus        21 ~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~-~~~~~-----~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~   94 (328)
T 4fcg_A           21 GSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNN-PQIET-----RTGRALKATADLLEDATQPGRVALELRSVPLP   94 (328)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTC-TTSCC-----SHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS
T ss_pred             ccccCchHHHHHHHHHHhccCCchhhhhhhccccccc-ccccc-----cCCcchhhhHHHHhcccccceeEEEccCCCch
Confidence            3445678899999999988 46666667784   111 34565     6666552          256666777776666


Q ss_pred             ccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhcc
Q 024632           85 GSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLG  164 (265)
Q Consensus        85 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  164 (265)
                       .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|++.+.+|..+.
T Consensus        95 -~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~  171 (328)
T 4fcg_A           95 -QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLA  171 (328)
T ss_dssp             -SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSE
T ss_pred             -hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHh
Confidence             56666666666666666666666 66666666666666666666666 5566666666666666666555555554433


Q ss_pred             C---------CCCCCEEEcccCCCCCCCChhhh
Q 024632          165 L---------LVRLSAFDVSNNKLSGPIPASLG  188 (265)
Q Consensus       165 ~---------l~~L~~L~l~~N~l~g~~p~~~~  188 (265)
                      .         +++|+.|++++|.++ .+|..+.
T Consensus       172 ~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~  203 (328)
T 4fcg_A          172 STDASGEHQGLVNLQSLRLEWTGIR-SLPASIA  203 (328)
T ss_dssp             EEC-CCCEEESTTCCEEEEEEECCC-CCCGGGG
T ss_pred             hccchhhhccCCCCCEEECcCCCcC-cchHhhc
Confidence            2         444444444444444 4444433

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.82  E-value=2e-19  Score=151.75  Aligned_cols=141  Identities=21%  Similarity=0.165  Sum_probs=83.7

Q ss_pred             eecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCC
Q 024632           67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLN  146 (265)
Q Consensus        67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  146 (265)
                      +..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus        81 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  160 (270)
T 2o6q_A           81 FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLK  160 (270)
T ss_dssp             TSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             hcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccc
Confidence            34455555555555555543334455555666666666666544444455666666666666666644444456666666


Q ss_pred             EEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCCCC
Q 024632          147 VIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGY  211 (265)
Q Consensus       147 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~~  211 (265)
                      +|++++|++++..+..+..+++|+.|++++|++++..+..+..    ++.++.+++++|++.|.+
T Consensus       161 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~----l~~L~~L~l~~N~~~c~c  221 (270)
T 2o6q_A          161 ELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS----LEKLKMLQLQENPWDCTC  221 (270)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT----CTTCCEEECCSSCBCCSS
T ss_pred             eeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhcc----ccCCCEEEecCCCeeCCC
Confidence            6666666666544445666666666666666666433333433    667777788888877765

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.81  E-value=1.8e-19  Score=152.32  Aligned_cols=143  Identities=23%  Similarity=0.170  Sum_probs=119.2

Q ss_pred             eeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcC
Q 024632           66 ATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYL  145 (265)
Q Consensus        66 ~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  145 (265)
                      .+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|
T Consensus        80 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  159 (272)
T 3rfs_A           80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL  159 (272)
T ss_dssp             GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC
Confidence            45567888999999998887666668888999999999999986666668888999999999999987666677888999


Q ss_pred             CEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCCCCC
Q 024632          146 NVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYP  212 (265)
Q Consensus       146 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~~~  212 (265)
                      ++|++++|++++..+..+..+++|+.|++++|++++..|..+..    ++.++.+++++|++.|.++
T Consensus       160 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~----l~~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          160 TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDR----LTSLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT----CTTCCEEECCSSCBCCCTT
T ss_pred             CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhC----CcCCCEEEccCCCccccCc
Confidence            99999999998776777788899999999999998766666665    7888899999999888764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=4.6e-19  Score=143.73  Aligned_cols=139  Identities=21%  Similarity=0.170  Sum_probs=120.3

Q ss_pred             CCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEE
Q 024632           70 NGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVID  149 (265)
Q Consensus        70 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  149 (265)
                      .+++++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence            35799999999999966666788999999999999999965555678999999999999999976666788999999999


Q ss_pred             ccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCCCCC
Q 024632          150 LHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYP  212 (265)
Q Consensus       150 Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~~~  212 (265)
                      +++|++++..+..+..+++|+.|++++|.+++..+..+..    ++.++.+++++|++.|.++
T Consensus       107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~----l~~L~~L~l~~N~~~~~~~  165 (208)
T 2o6s_A          107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR----LTSLQYIWLHDNPWDCTCP  165 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT----CTTCCEEECCSCCBCCCTT
T ss_pred             cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhcc----CCCccEEEecCCCeecCCC
Confidence            9999999766677899999999999999999665555655    7889999999999888764

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.80  E-value=2e-19  Score=152.76  Aligned_cols=141  Identities=24%  Similarity=0.190  Sum_probs=73.5

Q ss_pred             eecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCC
Q 024632           67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLN  146 (265)
Q Consensus        67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  146 (265)
                      +..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus       101 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  180 (285)
T 1ozn_A          101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD  180 (285)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             hcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccC
Confidence            33444455555555555444444445555555555555555533333344555555555555555533333455555555


Q ss_pred             EEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCCCC
Q 024632          147 VIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGY  211 (265)
Q Consensus       147 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~~  211 (265)
                      +|++++|.+++..|..+..+++|+.|++++|.+++..+..+..    ++.++.+++++|++.|.+
T Consensus       181 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----l~~L~~L~l~~N~~~c~~  241 (285)
T 1ozn_A          181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP----LRALQYLRLNDNPWVCDC  241 (285)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTT----CTTCCEEECCSSCEECSG
T ss_pred             EEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHccc----CcccCEEeccCCCccCCC
Confidence            5555555555555555555555555555555555433333443    566666677777766654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.80  E-value=2e-19  Score=144.46  Aligned_cols=131  Identities=19%  Similarity=0.208  Sum_probs=88.5

Q ss_pred             EEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCC-CcccCcccceeccccccCCCCCchHhhhCCcCCEEEccC
Q 024632           74 YKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPA-DLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHD  152 (265)
Q Consensus        74 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  152 (265)
                      +++++++|+++ .+|..+..  ++++|++++|.+++..+. .+..+++|++|+|++|.+++..|..+..+++|++|++++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            45677777775 56655433  677777777777644333 366777777777777777766666777777777777777


Q ss_pred             ccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCCCC
Q 024632          153 NLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGY  211 (265)
Q Consensus       153 N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~~  211 (265)
                      |++++..|..|..+++|++|++++|++++..|..+..    ++.++.+++++|++.|.+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~----l~~L~~L~L~~N~l~c~c  142 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH----LNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTT----CTTCCEEECTTCCBCCSG
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhc----CCCCCEEEeCCCCccCcC
Confidence            7777666666677777777777777777666666655    666677777777766654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.79  E-value=9.7e-19  Score=149.35  Aligned_cols=138  Identities=27%  Similarity=0.191  Sum_probs=101.4

Q ss_pred             cCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEE
Q 024632           69 NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVI  148 (265)
Q Consensus        69 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  148 (265)
                      .+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|+.|
T Consensus        75 ~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  153 (290)
T 1p9a_G           75 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL  153 (290)
T ss_dssp             CCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEE
Confidence            4566667777777766 566667777778888888888775555667777888888888888876655666777788888


Q ss_pred             EccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCCCCC
Q 024632          149 DLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYP  212 (265)
Q Consensus       149 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~~~  212 (265)
                      ++++|++++..+..+..+++|+.|++++|+++ .+|..+..    .+.++.+++++|++.|.|.
T Consensus       154 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~----~~~L~~l~L~~Np~~C~c~  212 (290)
T 1p9a_G          154 SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG----SHLLPFAFLHGNPWLCNCE  212 (290)
T ss_dssp             ECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT----TCCCSEEECCSCCBCCSGG
T ss_pred             ECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcc----cccCCeEEeCCCCccCcCc
Confidence            88888887444445677788888888888887 66776665    5577788889999988763

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.79  E-value=4.9e-19  Score=153.76  Aligned_cols=138  Identities=17%  Similarity=0.271  Sum_probs=90.8

Q ss_pred             CCCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCccc---------CcccceeccccccCC
Q 024632           62 YLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQY---------LVNLAVLNLSANRLA  132 (265)
Q Consensus        62 ~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~---------l~~L~~L~Ls~N~l~  132 (265)
                      ..|..+..+++|++|++++|.++ .+|..+..+++|++|++++|++.+.+|..+..         +++|++|++++|.++
T Consensus       118 ~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~  196 (328)
T 4fcg_A          118 ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR  196 (328)
T ss_dssp             CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC
T ss_pred             chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC
Confidence            46666777888888888888887 67777777888888888877776677766543         666666666666666


Q ss_pred             CCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCC
Q 024632          133 GEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK  206 (265)
Q Consensus       133 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~  206 (265)
                       .+|..+..+++|++|++++|+++ .+|..++.+++|+.|++++|++.+.+|..+.+    ++.|+.+++++|.
T Consensus       197 -~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~----l~~L~~L~L~~n~  264 (328)
T 4fcg_A          197 -SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGG----RAPLKRLILKDCS  264 (328)
T ss_dssp             -CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTC----CCCCCEEECTTCT
T ss_pred             -cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcC----CCCCCEEECCCCC
Confidence             56666666666666666666666 34555666666666666666666566655544    4444444444443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.78  E-value=7.8e-19  Score=141.20  Aligned_cols=131  Identities=18%  Similarity=0.220  Sum_probs=110.9

Q ss_pred             EEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCc
Q 024632           74 YKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDN  153 (265)
Q Consensus        74 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  153 (265)
                      +++++++|+++ .+|..+.  ++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            46888899888 6776554  68999999999998 78888999999999999999999777778999999999999999


Q ss_pred             cCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCCCCC
Q 024632          154 LLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYP  212 (265)
Q Consensus       154 ~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~~~  212 (265)
                      ++++..|..|..+++|+.|++++|.+++..+..+..    ++.++.+++++|++.|.+.
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~----l~~L~~L~L~~N~~~C~c~  143 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFND----LSALSHLAIGANPLYCDCN  143 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTT----CTTCCEEECCSSCEECSGG
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhc----CccccEEEeCCCCeecCCc
Confidence            999777778899999999999999998554445655    7888889999999988764

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.77  E-value=1.6e-18  Score=156.32  Aligned_cols=139  Identities=20%  Similarity=0.164  Sum_probs=127.8

Q ss_pred             CCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEE
Q 024632           70 NGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVID  149 (265)
Q Consensus        70 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  149 (265)
                      .+++++|++++|.+.+..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus       274 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  353 (455)
T 3v47_A          274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD  353 (455)
T ss_dssp             TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred             ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence            46899999999999988899999999999999999999988888999999999999999999988889999999999999


Q ss_pred             ccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCCCCC
Q 024632          150 LHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYP  212 (265)
Q Consensus       150 Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~~~  212 (265)
                      +++|++++..|..+..+++|+.|++++|++++..+..+..    ++.++.+++++|+..|.+|
T Consensus       354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~----l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDR----LTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTT----CTTCCEEECCSSCBCCCTT
T ss_pred             CCCCcccccChhhccccccccEEECCCCccccCCHhHhcc----CCcccEEEccCCCcccCCC
Confidence            9999999888999999999999999999999655555555    8889999999999999876

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.76  E-value=9.2e-18  Score=140.09  Aligned_cols=134  Identities=21%  Similarity=0.200  Sum_probs=120.5

Q ss_pred             CCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEc
Q 024632           71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL  150 (265)
Q Consensus        71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  150 (265)
                      ++++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  114 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL  114 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence            57899999999999888888999999999999999999877778999999999999999999777788899999999999


Q ss_pred             cCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCC
Q 024632          151 HDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDL  208 (265)
Q Consensus       151 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~  208 (265)
                      ++|++++..+..+..+++|+.|++++|++++..|..+.+    ++.|+.+++++|...
T Consensus       115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----l~~L~~L~L~~N~l~  168 (251)
T 3m19_A          115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDK----LTNLQTLSLSTNQLQ  168 (251)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT----CTTCCEEECCSSCCS
T ss_pred             CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCc----CcCCCEEECCCCcCC
Confidence            999999766667899999999999999999666656766    788999999999753

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.76  E-value=6.2e-19  Score=151.16  Aligned_cols=139  Identities=17%  Similarity=0.206  Sum_probs=71.0

Q ss_pred             cCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCC-CCCCCcccCcccceeccccccCCCCCchHhhhCCcCCE
Q 024632           69 NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTG-SIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNV  147 (265)
Q Consensus        69 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  147 (265)
                      .+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|.+++..|..+..+++|++
T Consensus       124 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  203 (306)
T 2z66_A          124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV  203 (306)
T ss_dssp             TCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             hccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCE
Confidence            34444555555554444444444455555555555555543 24444555555555555555555444455555555555


Q ss_pred             EEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCC-CCCCCCCCCCCCCCCC
Q 024632          148 IDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLP-KFNASSFEGNKDLYGY  211 (265)
Q Consensus       148 L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~-~l~~~~~~~N~~~c~~  211 (265)
                      |++++|++++..+..+..+++|+.|++++|++++..|..+..    ++ .++.+++++|++.|.+
T Consensus       204 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~----~~~~L~~L~L~~N~~~~~c  264 (306)
T 2z66_A          204 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH----FPSSLAFLNLTQNDFACTC  264 (306)
T ss_dssp             EECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCC----CCTTCCEEECTTCCEECSG
T ss_pred             EECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHh----hhccCCEEEccCCCeeccc
Confidence            555555555444444555555555555555555555544443    32 4555555566555543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.76  E-value=7.6e-19  Score=154.43  Aligned_cols=150  Identities=25%  Similarity=0.173  Sum_probs=106.0

Q ss_pred             CCCCCCCCceee-cCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCC
Q 024632           57 NGFTSYLPGATC-NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEI  135 (265)
Q Consensus        57 ~~~~~~~~~~~~-~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  135 (265)
                      |.++...++.+. .+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|.+++..
T Consensus        49 N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~  128 (361)
T 2xot_A           49 NNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVD  128 (361)
T ss_dssp             SCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             CCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEEC
Confidence            344444444454 6778888888888887666667778888888888888887555556777888888888888887666


Q ss_pred             chHhhhCCcCCEEEccCccCcccCChh-c---cCCCCCCEEEcccCCCCCCCChhhhccCCCCCC--CCCCCCCCCCCCC
Q 024632          136 PPQLTLCAYLNVIDLHDNLLTGQIPQQ-L---GLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPK--FNASSFEGNKDLY  209 (265)
Q Consensus       136 p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~---~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~--l~~~~~~~N~~~c  209 (265)
                      |..+..+++|+.|+|++|++++ +|.. +   ..+++|+.|++++|++++..+..+..    ++.  +..+++++|++.|
T Consensus       129 ~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~----l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          129 RNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQK----LPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSCCCCCCHHHHHH----SCHHHHTTEECCSSCEEC
T ss_pred             HHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhh----ccHhhcceEEecCCCccC
Confidence            7777888888888888888874 4443 3   45778888888888887544445555    444  3567888888888


Q ss_pred             CC
Q 024632          210 GY  211 (265)
Q Consensus       210 ~~  211 (265)
                      .|
T Consensus       204 ~C  205 (361)
T 2xot_A          204 DC  205 (361)
T ss_dssp             CH
T ss_pred             Cc
Confidence            75

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.75  E-value=9.7e-19  Score=163.21  Aligned_cols=144  Identities=17%  Similarity=0.160  Sum_probs=124.2

Q ss_pred             ceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCC-CCCCcccCcccceeccccccCCCCCchHhhhCC
Q 024632           65 GATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGS-IPADLQYLVNLAVLNLSANRLAGEIPPQLTLCA  143 (265)
Q Consensus        65 ~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  143 (265)
                      ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..|..+..++
T Consensus       418 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  497 (606)
T 3vq2_A          418 SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH  497 (606)
T ss_dssp             TTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             hhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccc
Confidence            4556778888899998888887888888899999999999988863 688888899999999999999888888889999


Q ss_pred             cCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCC-CCCCCCCCCCCCCCCCCC
Q 024632          144 YLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLP-KFNASSFEGNKDLYGYPL  213 (265)
Q Consensus       144 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~-~l~~~~~~~N~~~c~~~~  213 (265)
                      +|++|++++|++++..|..+..+++|+.|++++|+++ .+|..+..    ++ .++.+++++|++.|+++.
T Consensus       498 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~----l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQH----FPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             TCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGG----SCTTCCEEECCSCCCCCSSTT
T ss_pred             cCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhh----hcccCcEEEccCCCcccCCcc
Confidence            9999999999999888888999999999999999998 67777766    55 488899999999998865

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.75  E-value=2.9e-17  Score=138.49  Aligned_cols=148  Identities=22%  Similarity=0.203  Sum_probs=119.9

Q ss_pred             CCCCCCCCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCc
Q 024632           57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIP  136 (265)
Q Consensus        57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  136 (265)
                      +.+....+..+..+++|++|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+
T Consensus        47 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  126 (270)
T 2o6q_A           47 NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPP  126 (270)
T ss_dssp             SCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred             CCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCH
Confidence            33444344567778999999999999985545556889999999999999986555667889999999999999997777


Q ss_pred             hHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCC
Q 024632          137 PQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDL  208 (265)
Q Consensus       137 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~  208 (265)
                      ..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+.+    ++.|+.+++++|...
T Consensus       127 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----l~~L~~L~L~~N~l~  194 (270)
T 2o6q_A          127 RVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDK----LTELKTLKLDNNQLK  194 (270)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT----CTTCCEEECCSSCCS
T ss_pred             HHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhcc----CCCcCEEECCCCcCC
Confidence            77889999999999999999665666888999999999999998665555655    788888999998643

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.75  E-value=8e-18  Score=142.86  Aligned_cols=136  Identities=18%  Similarity=0.160  Sum_probs=69.3

Q ss_pred             eecCCCeEEEEeeCCC-ccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcC
Q 024632           67 TCNNGRIYKLSLTNLS-LQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYL  145 (265)
Q Consensus        67 ~~~~~~l~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  145 (265)
                      +..+++|++|++++|. +....|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|
T Consensus        76 ~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  155 (285)
T 1ozn_A           76 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL  155 (285)
T ss_dssp             TTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             cCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc
Confidence            3344445555555554 443334444555555555555555554444445555555555555555554333344555555


Q ss_pred             CEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCC
Q 024632          146 NVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK  206 (265)
Q Consensus       146 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~  206 (265)
                      ++|++++|++++..+..+..+++|+.|++++|.+++..|..+.+    ++.++.+++++|.
T Consensus       156 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----l~~L~~L~l~~n~  212 (285)
T 1ozn_A          156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD----LGRLMTLYLFANN  212 (285)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT----CTTCCEEECCSSC
T ss_pred             cEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccC----cccccEeeCCCCc
Confidence            55555555555333334555555555555555555444554444    5556666666664

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.75  E-value=7e-19  Score=165.63  Aligned_cols=132  Identities=19%  Similarity=0.330  Sum_probs=121.9

Q ss_pred             CCCCCCCCCCceeecCCCeEEEEeeCCCcccc-----------------CCccCc--CCCCCCEEECcCCCCCCCCCCCc
Q 024632           55 ACNGFTSYLPGATCNNGRIYKLSLTNLSLQGS-----------------ISPYLS--NCTNLQSLDLSSNALTGSIPADL  115 (265)
Q Consensus        55 ~c~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~-----------------~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~l  115 (265)
                      .+|.+++ +|..+.++++|++|+|++|.+++.                 +|..++  ++++|++|++++|.+.+.+|..+
T Consensus       191 ~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l  269 (636)
T 4eco_A          191 LSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL  269 (636)
T ss_dssp             CSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT
T ss_pred             ccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH
Confidence            4677777 888899999999999999999985                 999999  99999999999999999999999


Q ss_pred             ccCcccceecccccc-CCC-CCchHhhhC------CcCCEEEccCccCcccCCh--hccCCCCCCEEEcccCCCCCCCCh
Q 024632          116 QYLVNLAVLNLSANR-LAG-EIPPQLTLC------AYLNVIDLHDNLLTGQIPQ--QLGLLVRLSAFDVSNNKLSGPIPA  185 (265)
Q Consensus       116 ~~l~~L~~L~Ls~N~-l~~-~~p~~~~~l------~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~l~~N~l~g~~p~  185 (265)
                      .++++|++|++++|. ++| .+|..++.+      ++|++|++++|+++ .+|.  .++.+++|+.|++++|.++|.+| 
T Consensus       270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-  347 (636)
T 4eco_A          270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-  347 (636)
T ss_dssp             TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-
T ss_pred             hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-
Confidence            999999999999998 998 899999887      99999999999999 8998  89999999999999999998888 


Q ss_pred             hhhc
Q 024632          186 SLGN  189 (265)
Q Consensus       186 ~~~~  189 (265)
                      .+.+
T Consensus       348 ~~~~  351 (636)
T 4eco_A          348 AFGS  351 (636)
T ss_dssp             CCEE
T ss_pred             hhCC
Confidence            6554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.74  E-value=7.4e-18  Score=129.43  Aligned_cols=127  Identities=23%  Similarity=0.263  Sum_probs=111.3

Q ss_pred             CCeEEEEeeCCCcc-ccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEE
Q 024632           71 GRIYKLSLTNLSLQ-GSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVID  149 (265)
Q Consensus        71 ~~l~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  149 (265)
                      ++++.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            67899999999998 78899899999999999999999955  6789999999999999999977899888999999999


Q ss_pred             ccCccCccc-CChhccCCCCCCEEEcccCCCCCCCC---hhhhccCCCCCCCCCCCCC
Q 024632          150 LHDNLLTGQ-IPQQLGLLVRLSAFDVSNNKLSGPIP---ASLGNRSGNLPKFNASSFE  203 (265)
Q Consensus       150 Ls~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~g~~p---~~~~~~~~~l~~l~~~~~~  203 (265)
                      +++|.+++. .|..+..+++|+.|++++|++++..+   ..+..    ++.++.++++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~----l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKL----LPQLTYLDGY  148 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHH----CTTCCEETTB
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHH----CCCcccccCC
Confidence            999999963 34789999999999999999996655   45666    7777777654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.74  E-value=9.6e-18  Score=131.39  Aligned_cols=132  Identities=23%  Similarity=0.243  Sum_probs=114.5

Q ss_pred             CCCeEEEEeeCCCcc-ccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEE
Q 024632           70 NGRIYKLSLTNLSLQ-GSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVI  148 (265)
Q Consensus        70 ~~~l~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  148 (265)
                      .+++++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            367899999999998 78888889999999999999999954  778899999999999999997788888889999999


Q ss_pred             EccCccCcccC-ChhccCCCCCCEEEcccCCCCCCCC---hhhhccCCCCCCCCCCCCCCCCC
Q 024632          149 DLHDNLLTGQI-PQQLGLLVRLSAFDVSNNKLSGPIP---ASLGNRSGNLPKFNASSFEGNKD  207 (265)
Q Consensus       149 ~Ls~N~l~~~~-p~~~~~l~~L~~L~l~~N~l~g~~p---~~~~~~~~~l~~l~~~~~~~N~~  207 (265)
                      ++++|.+++.. +..+..+++|+.|++++|++++..+   ..+..    ++.++.+++++|..
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~----l~~L~~L~l~~n~~  159 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKL----LPQLTYLDGYDRED  159 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTT----CSSCCEETTEETTS
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHh----CccCcEecCCCCCh
Confidence            99999999532 2778999999999999999995544   35555    88899999998874

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.74  E-value=3.3e-18  Score=159.55  Aligned_cols=144  Identities=16%  Similarity=0.177  Sum_probs=129.7

Q ss_pred             ceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCC-CCCCCCcccCcccceeccccccCCCCCchHhhhCC
Q 024632           65 GATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALT-GSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCA  143 (265)
Q Consensus        65 ~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  143 (265)
                      ..+..+.+++.++++.|.+.+..+..+..++.++.|++++|.+. +..|..+..+++|++|+|++|++++..|..|.+++
T Consensus       439 ~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~  518 (635)
T 4g8a_A          439 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS  518 (635)
T ss_dssp             CTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             cccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCC
Confidence            34556788999999999999888888999999999999999754 45678899999999999999999988899999999


Q ss_pred             cCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCC-CCCCCCCCCCCCCCCCCC
Q 024632          144 YLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNL-PKFNASSFEGNKDLYGYP  212 (265)
Q Consensus       144 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l-~~l~~~~~~~N~~~c~~~  212 (265)
                      +|++|+|++|++++..|..+..+++|+.|++++|++++..|..+..    + +.++.+++++||+.|+|.
T Consensus       519 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~----l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          519 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH----FPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             TCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTC----CCTTCCEEECTTCCBCCSGG
T ss_pred             CCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHh----hhCcCCEEEeeCCCCcccCC
Confidence            9999999999999888888999999999999999999998988876    4 468889999999999875

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.74  E-value=2.1e-17  Score=132.53  Aligned_cols=114  Identities=20%  Similarity=0.252  Sum_probs=105.3

Q ss_pred             CeEEEEeeCCCccccCCc-cCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEc
Q 024632           72 RIYKLSLTNLSLQGSISP-YLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL  150 (265)
Q Consensus        72 ~l~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  150 (265)
                      ++++|++++|.+++..+. .+..+++|++|++++|.+++..|..+..+++|++|+|++|.+++..|..+..+++|++|++
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            889999999999965554 4889999999999999999888999999999999999999999888888999999999999


Q ss_pred             cCccCcccCChhccCCCCCCEEEcccCCCCCCCCh
Q 024632          151 HDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPA  185 (265)
Q Consensus       151 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~  185 (265)
                      ++|++++..|..+..+++|++|++++|++++..+.
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  144 (192)
T 1w8a_A          110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence            99999999999999999999999999999987663

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.73  E-value=8.4e-18  Score=151.42  Aligned_cols=151  Identities=21%  Similarity=0.190  Sum_probs=107.6

Q ss_pred             CCCCCCCCceeecCCCeEEEEeeCCCccccCCcc-------------------------CcCCCCCCEEECcCCCCCCCC
Q 024632           57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPY-------------------------LSNCTNLQSLDLSSNALTGSI  111 (265)
Q Consensus        57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~-------------------------l~~l~~L~~L~Ls~N~l~~~~  111 (265)
                      |.+....++.+..+++|++|++++|.++...+..                         +.++++|++|++++|.++ .+
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~  200 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EI  200 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SC
T ss_pred             CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cc
Confidence            3444444456777888888888888877443333                         444555556666666665 44


Q ss_pred             CCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccC
Q 024632          112 PADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRS  191 (265)
Q Consensus       112 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~  191 (265)
                      | .+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..|..|..+++|+.|++++|++++..+..+..  
T Consensus       201 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~--  277 (440)
T 3zyj_A          201 P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP--  277 (440)
T ss_dssp             C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS--
T ss_pred             c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc--
Confidence            4 3556677777777777777666777777888888888888888777777888888888888888888555555554  


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCC
Q 024632          192 GNLPKFNASSFEGNKDLYGYPL  213 (265)
Q Consensus       192 ~~l~~l~~~~~~~N~~~c~~~~  213 (265)
                        ++.++.+++++|++.|+|.+
T Consensus       278 --l~~L~~L~L~~Np~~CdC~l  297 (440)
T 3zyj_A          278 --LHHLERIHLHHNPWNCNCDI  297 (440)
T ss_dssp             --CTTCCEEECCSSCEECSSTT
T ss_pred             --ccCCCEEEcCCCCccCCCCc
Confidence              78888999999999998743

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.73  E-value=2.4e-17  Score=130.27  Aligned_cols=129  Identities=19%  Similarity=0.187  Sum_probs=74.1

Q ss_pred             EEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCcc
Q 024632           75 KLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNL  154 (265)
Q Consensus        75 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  154 (265)
                      .+++++++++ .+|..+  .++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+
T Consensus        11 ~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~   87 (177)
T 2o6r_A           11 EIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK   87 (177)
T ss_dssp             EEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence            4555555555 344333  2466666666666664444445666666666666666664444445666666666666666


Q ss_pred             CcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCCC
Q 024632          155 LTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYG  210 (265)
Q Consensus       155 l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~  210 (265)
                      +++..+..+..+++|+.|++++|.+++..+..+..    ++.++.+++++|++.|.
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~----l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDR----LTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT----CTTCCEEECCSSCBCCC
T ss_pred             ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcC----CcccCEEEecCCCeecc
Confidence            66544445566666666666666666333322333    55566666666665554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.73  E-value=1.2e-17  Score=136.92  Aligned_cols=120  Identities=18%  Similarity=0.184  Sum_probs=111.1

Q ss_pred             ceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCc
Q 024632           65 GATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAY  144 (265)
Q Consensus        65 ~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  144 (265)
                      +.+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+|++|.+++..|..+..+++
T Consensus        51 ~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  130 (220)
T 2v70_A           51 GIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS  130 (220)
T ss_dssp             CCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTT
T ss_pred             hhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCcc
Confidence            45678999999999999999777778999999999999999999777777999999999999999999888999999999


Q ss_pred             CCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCC
Q 024632          145 LNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIP  184 (265)
Q Consensus       145 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p  184 (265)
                      |++|++++|++++..|..+..+++|+.|++++|++++..+
T Consensus       131 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          131 VRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             CSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            9999999999998889999999999999999999987655

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.73  E-value=1.1e-17  Score=141.35  Aligned_cols=150  Identities=20%  Similarity=0.179  Sum_probs=106.6

Q ss_pred             CCCCCCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCC-Cch
Q 024632           59 FTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGE-IPP  137 (265)
Q Consensus        59 ~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~  137 (265)
                      +....++.+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. +|.
T Consensus        64 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~  143 (276)
T 2z62_A           64 IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE  143 (276)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG
T ss_pred             CCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCch
Confidence            3333344566778888888888888876667788888888888888888865555677888888888888888753 577


Q ss_pred             HhhhCCcCCEEEccCccCcccCChhccCCC---------------------------CCCEEEcccCCCCCCCChhhhcc
Q 024632          138 QLTLCAYLNVIDLHDNLLTGQIPQQLGLLV---------------------------RLSAFDVSNNKLSGPIPASLGNR  190 (265)
Q Consensus       138 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~---------------------------~L~~L~l~~N~l~g~~p~~~~~~  190 (265)
                      .+..+++|++|++++|++++..+..+..++                           +|+.|++++|++++..+..+.+ 
T Consensus       144 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~-  222 (276)
T 2z62_A          144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDR-  222 (276)
T ss_dssp             GGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTT-
T ss_pred             hhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcc-
Confidence            888888888888888887765444443332                           4556666666666433333333 


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCC
Q 024632          191 SGNLPKFNASSFEGNKDLYGYP  212 (265)
Q Consensus       191 ~~~l~~l~~~~~~~N~~~c~~~  212 (265)
                         ++.++.+++++|++.|.++
T Consensus       223 ---l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          223 ---LTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             ---CCSCCEEECCSSCBCCCTT
T ss_pred             ---cccccEEEccCCcccccCC
Confidence               7778888888998888764

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.73  E-value=1.4e-17  Score=150.42  Aligned_cols=151  Identities=19%  Similarity=0.154  Sum_probs=111.0

Q ss_pred             CCCCCCCCceeecCCCeEEEEeeCCCccccCCcc-------------------------CcCCCCCCEEECcCCCCCCCC
Q 024632           57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPY-------------------------LSNCTNLQSLDLSSNALTGSI  111 (265)
Q Consensus        57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~-------------------------l~~l~~L~~L~Ls~N~l~~~~  111 (265)
                      |.+....++.+..+++|++|+|++|.++...+..                         +..+++|++|++++|.++ .+
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~  211 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DM  211 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SC
T ss_pred             CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-cc
Confidence            3344444556677888999999998887443333                         445566666666666666 34


Q ss_pred             CCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccC
Q 024632          112 PADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRS  191 (265)
Q Consensus       112 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~  191 (265)
                      | .+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..|..|..+++|+.|++++|++++..+..+..  
T Consensus       212 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~--  288 (452)
T 3zyi_A          212 P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP--  288 (452)
T ss_dssp             C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT--
T ss_pred             c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc--
Confidence            4 3566777788888888887777778888888888888888888777788888888888888888888555555544  


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCC
Q 024632          192 GNLPKFNASSFEGNKDLYGYPL  213 (265)
Q Consensus       192 ~~l~~l~~~~~~~N~~~c~~~~  213 (265)
                        ++.++.+++++|++.|.|.+
T Consensus       289 --l~~L~~L~L~~Np~~CdC~~  308 (452)
T 3zyi_A          289 --LRYLVELHLHHNPWNCDCDI  308 (452)
T ss_dssp             --CTTCCEEECCSSCEECSTTT
T ss_pred             --ccCCCEEEccCCCcCCCCCc
Confidence              77888899999999998753

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.72  E-value=7.1e-17  Score=136.29  Aligned_cols=136  Identities=23%  Similarity=0.186  Sum_probs=120.3

Q ss_pred             eecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCC
Q 024632           67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLN  146 (265)
Q Consensus        67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  146 (265)
                      +..+++|++|++++|.+++ + +.+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus        59 l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  136 (272)
T 3rfs_A           59 IQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT  136 (272)
T ss_dssp             GGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             cccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence            5578999999999999985 3 4789999999999999999977777789999999999999999977777789999999


Q ss_pred             EEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCC
Q 024632          147 VIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDL  208 (265)
Q Consensus       147 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~  208 (265)
                      +|++++|++++..|..+..+++|+.|++++|++++..|..+.+    ++.|+.+++++|...
T Consensus       137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK----LTQLKDLRLYQNQLK  194 (272)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT----CTTCCEEECCSSCCS
T ss_pred             EEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcC----CccCCEEECCCCcCC
Confidence            9999999999777777899999999999999999766666665    788999999999744

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.72  E-value=2.5e-17  Score=140.63  Aligned_cols=145  Identities=26%  Similarity=0.218  Sum_probs=119.6

Q ss_pred             CCCCCCCCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCc
Q 024632           57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIP  136 (265)
Q Consensus        57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  136 (265)
                      |.+....++.+..+++|++|++++|.+++. +. ...+++|++|++++|.++ .+|..+..+++|++|++++|++++..|
T Consensus        41 N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~  117 (290)
T 1p9a_G           41 NLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPL  117 (290)
T ss_dssp             SCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCS
T ss_pred             CcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCH
Confidence            334443455667788999999999999853 33 278899999999999998 788888999999999999999997777


Q ss_pred             hHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCC
Q 024632          137 PQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDL  208 (265)
Q Consensus       137 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~  208 (265)
                      ..+..+++|++|++++|++++..+..|..+++|+.|++++|++++..+..+..    ++.|+.+++++|...
T Consensus       118 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~----l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG----LENLDTLLLQENSLY  185 (290)
T ss_dssp             STTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTT----CTTCCEEECCSSCCC
T ss_pred             HHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcC----cCCCCEEECCCCcCC
Confidence            88999999999999999999776777889999999999999999544444444    788889999999754

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.72  E-value=1.9e-17  Score=154.39  Aligned_cols=133  Identities=21%  Similarity=0.179  Sum_probs=115.8

Q ss_pred             CCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEc
Q 024632           71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL  150 (265)
Q Consensus        71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  150 (265)
                      .++++|+|++|.|++..+..|.++++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|.++++|++|++
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            47899999999999766778999999999999999999666677999999999999999999766778899999999999


Q ss_pred             cCccCcccCChhccCCCCCCEEEcccCCCCC-CCChhhhccCCCCCCCCCCCCCCCCC
Q 024632          151 HDNLLTGQIPQQLGLLVRLSAFDVSNNKLSG-PIPASLGNRSGNLPKFNASSFEGNKD  207 (265)
Q Consensus       151 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g-~~p~~~~~~~~~l~~l~~~~~~~N~~  207 (265)
                      ++|++++..+..|+.+++|+.|++++|.+++ .+|..+..    ++.++.+++++|..
T Consensus       132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~----l~~L~~L~L~~N~l  185 (635)
T 4g8a_A          132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN----LTNLEHLDLSSNKI  185 (635)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG----CTTCCEEECCSSCC
T ss_pred             CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhcc----chhhhhhcccCccc
Confidence            9999997666678999999999999999975 46777776    77788888888864

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.72  E-value=3.1e-17  Score=134.39  Aligned_cols=126  Identities=21%  Similarity=0.211  Sum_probs=111.5

Q ss_pred             CCCCCCCCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCc
Q 024632           57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIP  136 (265)
Q Consensus        57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  136 (265)
                      |.+....++.+..+++|++|+|++|.+++..|..|.++++|++|+|++|.++...+..|..+++|++|+|++|.+++..|
T Consensus        42 n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~  121 (220)
T 2v9t_B           42 NTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRV  121 (220)
T ss_dssp             SCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCH
Confidence            44444445577788999999999999998889999999999999999999995444557889999999999999998888


Q ss_pred             hHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCC
Q 024632          137 PQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGP  182 (265)
Q Consensus       137 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~  182 (265)
                      ..+..+++|++|++++|++++..+..+..+++|+.|++++|++...
T Consensus       122 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B          122 DAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             HHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence            9999999999999999999977777899999999999999998754

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.71  E-value=9.3e-18  Score=156.55  Aligned_cols=143  Identities=23%  Similarity=0.164  Sum_probs=72.3

Q ss_pred             CceeecCCCeEEEEeeCCCccccCCcc-CcCCCCCCEEECcCCCCCCCCCCCcccCcccceecccccc------------
Q 024632           64 PGATCNNGRIYKLSLTNLSLQGSISPY-LSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANR------------  130 (265)
Q Consensus        64 ~~~~~~~~~l~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~------------  130 (265)
                      +..+..+++|++|++++|.+.+..+.. +..+++|++|++++|.+++..|..+..+++|++|++++|.            
T Consensus       393 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  472 (606)
T 3t6q_A          393 TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSL  472 (606)
T ss_dssp             TTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGG
T ss_pred             HHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhh
Confidence            333444455555555555554433322 4445555555555555554444444445555555555554            


Q ss_pred             ---------------CCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCC
Q 024632          131 ---------------LAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLP  195 (265)
Q Consensus       131 ---------------l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~  195 (265)
                                     +++..|..+..+++|++|++++|++++..|..+..+++| .|++++|++++..|..+..    ++
T Consensus       473 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~----l~  547 (606)
T 3t6q_A          473 QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPI----LS  547 (606)
T ss_dssp             GGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHH----HH
T ss_pred             ccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhccc----CC
Confidence                           444444444444555555555555544444445555555 5555555555444444444    45


Q ss_pred             CCCCCCCCCCCCCCCC
Q 024632          196 KFNASSFEGNKDLYGY  211 (265)
Q Consensus       196 ~l~~~~~~~N~~~c~~  211 (265)
                      .++.+++++|++.|.|
T Consensus       548 ~L~~L~l~~N~~~c~c  563 (606)
T 3t6q_A          548 QQRTINLRQNPLDCTC  563 (606)
T ss_dssp             TSSEEECTTCCEECSG
T ss_pred             CCCEEeCCCCCccccC
Confidence            5666677777766654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.71  E-value=1.7e-17  Score=153.37  Aligned_cols=143  Identities=18%  Similarity=0.192  Sum_probs=109.6

Q ss_pred             eecCCCeEEEEeeCCCccccCC-ccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCC-CCCchHhhhCCc
Q 024632           67 TCNNGRIYKLSLTNLSLQGSIS-PYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA-GEIPPQLTLCAY  144 (265)
Q Consensus        67 ~~~~~~l~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~  144 (265)
                      +..+++|++|++++|.+.+..| ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.++ +.+|..+..+++
T Consensus       392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~  471 (570)
T 2z63_A          392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN  471 (570)
T ss_dssp             EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred             ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccC
Confidence            4455666677777766665444 35677788888888888887777777778888888888888876 467777888888


Q ss_pred             CCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCCCCCC
Q 024632          145 LNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYPL  213 (265)
Q Consensus       145 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~~~~  213 (265)
                      |++|++++|++++..|..+..+++|+.|++++|++++..|..+.+    ++.++.+++++|++.|.++.
T Consensus       472 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR----LTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTT----CTTCCEEECCSSCBCCCTTT
T ss_pred             CCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhc----ccCCcEEEecCCcccCCCcc
Confidence            888888888888777888888888888888888888766666655    77888888999988887653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.70  E-value=4.3e-17  Score=154.09  Aligned_cols=147  Identities=20%  Similarity=0.153  Sum_probs=119.6

Q ss_pred             CCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCC----C----CCcccCcccceeccccccCCCC
Q 024632           63 LPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSI----P----ADLQYLVNLAVLNLSANRLAGE  134 (265)
Q Consensus        63 ~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~----p----~~l~~l~~L~~L~Ls~N~l~~~  134 (265)
                      .|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..    |    ..+..+++|++|++++|.++..
T Consensus       472 ~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i  551 (680)
T 1ziw_A          472 SPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI  551 (680)
T ss_dssp             SSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCC
T ss_pred             CCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCC
Confidence            4555667788999999999988766667888999999999999887431    1    2367889999999999999844


Q ss_pred             CchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhh-ccCCCCCCCCCCCCCCCCCCCCCCC
Q 024632          135 IPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLG-NRSGNLPKFNASSFEGNKDLYGYPL  213 (265)
Q Consensus       135 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~-~~~~~l~~l~~~~~~~N~~~c~~~~  213 (265)
                      .+..+..+++|++|++++|++++..+..|..+++|+.|++++|++++..|..+. .    ++.++.+++++||+.|+|+.
T Consensus       552 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~----~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          552 PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPA----FRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHH----HTTCSEEECTTCCCCBCCCC
T ss_pred             CHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhccc----ccccCEEEccCCCcccCCcc
Confidence            445688999999999999999966666678899999999999999977776665 4    67888999999999999874

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.70  E-value=2.3e-17  Score=152.89  Aligned_cols=148  Identities=26%  Similarity=0.365  Sum_probs=115.3

Q ss_pred             CCCCCCCCceeecCCCeEEEEeeCCCccc--cCCccCcCCCCCCEEECcCCCCCCCCCCC-cccCcccceeccccccCCC
Q 024632           57 NGFTSYLPGATCNNGRIYKLSLTNLSLQG--SISPYLSNCTNLQSLDLSSNALTGSIPAD-LQYLVNLAVLNLSANRLAG  133 (265)
Q Consensus        57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~  133 (265)
                      |.+.+..|..+..+++|++|++++|.+++  .+|..+..+++|++|++++|.+++.+|.. +..+++|++|++++|.+++
T Consensus       363 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~  442 (562)
T 3a79_B          363 NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG  442 (562)
T ss_dssp             SCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCG
T ss_pred             CccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCc
Confidence            34444456666778888888888888875  23456788888888888888888656654 7778888888888888876


Q ss_pred             CCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChh-hhccCCCCCCCCCCCCCCCCCCCCCC
Q 024632          134 EIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPAS-LGNRSGNLPKFNASSFEGNKDLYGYP  212 (265)
Q Consensus       134 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~-~~~~~~~l~~l~~~~~~~N~~~c~~~  212 (265)
                      ..|..+.  ++|++|++++|+++ .+|..+..+++|+.|++++|+++ .+|.. +..    ++.++.+++++|++.|.|+
T Consensus       443 ~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~----l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          443 SVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDR----LTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             GGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTT----CTTCCCEECCSCCBCCCHH
T ss_pred             chhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhc----CCCCCEEEecCCCcCCCcc
Confidence            6655443  68999999999998 78887789999999999999998 56765 554    7888899999999988753

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.70  E-value=1.3e-16  Score=129.17  Aligned_cols=128  Identities=22%  Similarity=0.168  Sum_probs=109.1

Q ss_pred             CCCCCCCCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCc
Q 024632           57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIP  136 (265)
Q Consensus        57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  136 (265)
                      |.+....++.+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+
T Consensus        38 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  117 (208)
T 2o6s_A           38 NSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPD  117 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCH
Confidence            34444344556778999999999999996656667899999999999999996656668899999999999999997767


Q ss_pred             hHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCC
Q 024632          137 PQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIP  184 (265)
Q Consensus       137 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p  184 (265)
                      ..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.+..|
T Consensus       118 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  165 (208)
T 2o6s_A          118 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  165 (208)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred             hHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence            678999999999999999997666668999999999999999887665

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.70  E-value=1.2e-16  Score=131.73  Aligned_cols=127  Identities=24%  Similarity=0.206  Sum_probs=110.9

Q ss_pred             CCCCCCCCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCc
Q 024632           57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIP  136 (265)
Q Consensus        57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  136 (265)
                      |.+.+..++.+..+++|++|+|++|.++...+..+..+++|++|+|++|++++..+..+..+++|++|++++|.++ .+|
T Consensus        50 n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp  128 (229)
T 3e6j_A           50 NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELP  128 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCC
T ss_pred             CccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccC
Confidence            4445545666778899999999999998555566899999999999999999666666889999999999999999 789


Q ss_pred             hHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCC
Q 024632          137 PQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIP  184 (265)
Q Consensus       137 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p  184 (265)
                      ..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..+
T Consensus       129 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          129 RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             TTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             cccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            999999999999999999996666778999999999999999987654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.70  E-value=2.8e-17  Score=138.79  Aligned_cols=132  Identities=17%  Similarity=0.158  Sum_probs=110.8

Q ss_pred             CCCCCCCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCch
Q 024632           58 GFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPP  137 (265)
Q Consensus        58 ~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  137 (265)
                      .+....+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+.
T Consensus        39 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  118 (276)
T 2z62_A           39 PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF  118 (276)
T ss_dssp             CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTC
T ss_pred             cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCch
Confidence            34433344566788999999999999876677889999999999999999977777899999999999999999876666


Q ss_pred             HhhhCCcCCEEEccCccCcc-cCChhccCCCCCCEEEcccCCCCCCCChhhhc
Q 024632          138 QLTLCAYLNVIDLHDNLLTG-QIPQQLGLLVRLSAFDVSNNKLSGPIPASLGN  189 (265)
Q Consensus       138 ~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~  189 (265)
                      .+..+++|++|++++|.+++ .+|..+..+++|+.|++++|++++..+..+..
T Consensus       119 ~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  171 (276)
T 2z62_A          119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV  171 (276)
T ss_dssp             CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred             hcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh
Confidence            78899999999999999986 36889999999999999999998766665544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.70  E-value=1.8e-17  Score=152.02  Aligned_cols=145  Identities=24%  Similarity=0.293  Sum_probs=91.9

Q ss_pred             CCCCCCceeecCCCeEEEEeeCCCccc--cCCccCcCCCCCCEEECcCCCCCCCCCCC-cccCcccceeccccccCCCCC
Q 024632           59 FTSYLPGATCNNGRIYKLSLTNLSLQG--SISPYLSNCTNLQSLDLSSNALTGSIPAD-LQYLVNLAVLNLSANRLAGEI  135 (265)
Q Consensus        59 ~~~~~~~~~~~~~~l~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~  135 (265)
                      +.+..|..+..+++|++|++++|.+++  .+|..+..+++|++|++++|.+++.+|.. +..+++|++|++++|.+++..
T Consensus       336 l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~  415 (520)
T 2z7x_B          336 LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI  415 (520)
T ss_dssp             CCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGG
T ss_pred             cChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcch
Confidence            333344555556666666666666664  34455666666666666666666545543 556666666666666666555


Q ss_pred             chHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChh-hhccCCCCCCCCCCCCCCCCCCCCC
Q 024632          136 PPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPAS-LGNRSGNLPKFNASSFEGNKDLYGY  211 (265)
Q Consensus       136 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~-~~~~~~~l~~l~~~~~~~N~~~c~~  211 (265)
                      |..+.  ++|++|++++|+++ .+|..+..+++|+.|++++|+++ .+|.. +..    ++.++.+++++|++.|.|
T Consensus       416 ~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~----l~~L~~L~l~~N~~~c~c  484 (520)
T 2z7x_B          416 FRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDR----LTSLQKIWLHTNPWDCSC  484 (520)
T ss_dssp             GGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTT----CTTCCEEECCSSCBCCCH
T ss_pred             hhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhcc----CCcccEEECcCCCCcccC
Confidence            54432  56777777777777 66766667777777777777777 45554 433    666777777777777653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.70  E-value=1.5e-17  Score=160.93  Aligned_cols=144  Identities=22%  Similarity=0.273  Sum_probs=124.4

Q ss_pred             CCCCCCCCCCceeecCCCeEEEEeeCCCccc-----------------cCCccCc--CCCCCCEEECcCCCCCCCCCCCc
Q 024632           55 ACNGFTSYLPGATCNNGRIYKLSLTNLSLQG-----------------SISPYLS--NCTNLQSLDLSSNALTGSIPADL  115 (265)
Q Consensus        55 ~c~~~~~~~~~~~~~~~~l~~L~L~~n~l~~-----------------~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~l  115 (265)
                      .+|.+++ +|..+.++++|++|+|++|.+++                 .+|..++  ++++|++|+|++|.+.+.+|..+
T Consensus       433 ~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l  511 (876)
T 4ecn_A          433 LTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL  511 (876)
T ss_dssp             CSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG
T ss_pred             ccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH
Confidence            4566666 78888899999999999999998                 3899988  99999999999999999999999


Q ss_pred             ccCcccceecccccc-CCC-CCchHhhhCC-------cCCEEEccCccCcccCCh--hccCCCCCCEEEcccCCCCCCCC
Q 024632          116 QYLVNLAVLNLSANR-LAG-EIPPQLTLCA-------YLNVIDLHDNLLTGQIPQ--QLGLLVRLSAFDVSNNKLSGPIP  184 (265)
Q Consensus       116 ~~l~~L~~L~Ls~N~-l~~-~~p~~~~~l~-------~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~l~~N~l~g~~p  184 (265)
                      .++++|+.|++++|+ ++| .+|..++.++       +|++|++++|+++ .+|.  .++.+++|+.|++++|.++ .+|
T Consensus       512 ~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp  589 (876)
T 4ecn_A          512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE  589 (876)
T ss_dssp             GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC
T ss_pred             hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch
Confidence            999999999999998 998 7898888776       9999999999999 8888  8999999999999999998 788


Q ss_pred             hhhhccCCCCCCCCCCCCCCCC
Q 024632          185 ASLGNRSGNLPKFNASSFEGNK  206 (265)
Q Consensus       185 ~~~~~~~~~l~~l~~~~~~~N~  206 (265)
                       .+.+    ++.|+.+++++|.
T Consensus       590 -~~~~----L~~L~~L~Ls~N~  606 (876)
T 4ecn_A          590 -AFGT----NVKLTDLKLDYNQ  606 (876)
T ss_dssp             -CCCT----TSEESEEECCSSC
T ss_pred             -hhcC----CCcceEEECcCCc
Confidence             5554    5555566666654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.69  E-value=7.4e-17  Score=141.70  Aligned_cols=136  Identities=25%  Similarity=0.204  Sum_probs=117.0

Q ss_pred             CCeEEEEeeCCCccccCCccCc-CCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEE
Q 024632           71 GRIYKLSLTNLSLQGSISPYLS-NCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVID  149 (265)
Q Consensus        71 ~~l~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  149 (265)
                      ..++.|+|++|.+++..+..+. .+++|+.|+|++|++++..+..|..+++|++|+|++|.+++..+..+..+++|++|+
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  118 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL  118 (361)
T ss_dssp             TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence            4578999999999977777777 899999999999999976677899999999999999999977777899999999999


Q ss_pred             ccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCC
Q 024632          150 LHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD  207 (265)
Q Consensus       150 Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~  207 (265)
                      |++|++++..|..|..+++|+.|++++|++++ +|..+......++.|+.+++++|..
T Consensus       119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l  175 (361)
T 2xot_A          119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKL  175 (361)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSCC
T ss_pred             CCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCC
Confidence            99999998888999999999999999999994 6655432123488899999999974

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.69  E-value=1.2e-16  Score=149.03  Aligned_cols=150  Identities=17%  Similarity=0.128  Sum_probs=100.3

Q ss_pred             CCCCCCCCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCc
Q 024632           57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIP  136 (265)
Q Consensus        57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  136 (265)
                      |.+.+..+..+.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..+..+++|++|++++|.+++..+
T Consensus        42 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~  121 (606)
T 3vq2_A           42 NPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLES  121 (606)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSS
T ss_pred             CCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccc
Confidence            44444444456667777777777777776666667777777777777777776667777777777777777777775555


Q ss_pred             hHhhhCCcCCEEEccCccCcc-cCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCC-CCCCCCCCCCC
Q 024632          137 PQLTLCAYLNVIDLHDNLLTG-QIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPK-FNASSFEGNKD  207 (265)
Q Consensus       137 ~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~-l~~~~~~~N~~  207 (265)
                      ..++++++|++|++++|.+++ .+|..++.+++|++|++++|++++..|..+..+.. ++. +..+++++|..
T Consensus       122 ~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~~l~~L~l~~n~l  193 (606)
T 3vq2_A          122 FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE-NPQVNLSLDMSLNPI  193 (606)
T ss_dssp             SCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHH-CTTCCCEEECTTCCC
T ss_pred             cccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhc-cccccceeeccCCCc
Confidence            667777777777777777764 46777777777777777777777666665555211 211 23466666653

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.68  E-value=6.3e-17  Score=138.61  Aligned_cols=141  Identities=18%  Similarity=0.179  Sum_probs=100.8

Q ss_pred             ceeecCCCeEEEEeeCCCccccCC-ccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCC-CCchHhhhC
Q 024632           65 GATCNNGRIYKLSLTNLSLQGSIS-PYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAG-EIPPQLTLC  142 (265)
Q Consensus        65 ~~~~~~~~l~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l  142 (265)
                      ..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ .+|..+..+
T Consensus        95 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l  174 (306)
T 2z66_A           95 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL  174 (306)
T ss_dssp             EEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred             hhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhC
Confidence            334556667777777776664333 456777777777777777776666667777778888888777765 456677777


Q ss_pred             CcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCC
Q 024632          143 AYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLY  209 (265)
Q Consensus       143 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c  209 (265)
                      ++|++|++++|++++..|..+..+++|+.|++++|.+++..+..+..    ++.++.+++++|....
T Consensus       175 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~----l~~L~~L~L~~N~l~~  237 (306)
T 2z66_A          175 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC----LNSLQVLDYSLNHIMT  237 (306)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTT----CTTCCEEECTTSCCCB
T ss_pred             cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccC----cccCCEeECCCCCCcc
Confidence            78888888888887766777777888888888888887655555554    7778888888887543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.68  E-value=8.1e-17  Score=146.16  Aligned_cols=145  Identities=18%  Similarity=0.119  Sum_probs=105.9

Q ss_pred             CCCCCCCCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCc
Q 024632           57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIP  136 (265)
Q Consensus        57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  136 (265)
                      |.+.+..+..+.++++|++|+|++|.+++..|..+.++++|++|++++|.+++..+..|..+++|++|++++|.+++..|
T Consensus        42 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~  121 (477)
T 2id5_A           42 NRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLD  121 (477)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECT
T ss_pred             CccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCCh
Confidence            34444445566677888888888888887777788888888888888888884444557788888888888888887777


Q ss_pred             hHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCC
Q 024632          137 PQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGN  205 (265)
Q Consensus       137 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N  205 (265)
                      ..+..+++|++|++++|.+++..|..|..+++|+.|++++|.+++..+..+.+    ++.|+.+++++|
T Consensus       122 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~----l~~L~~L~l~~n  186 (477)
T 2id5_A          122 YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSH----LHGLIVLRLRHL  186 (477)
T ss_dssp             TTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTT----CTTCCEEEEESC
T ss_pred             hHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcc----cCCCcEEeCCCC
Confidence            77888888888888888888777777888888888888888887544444444    344444444443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.67  E-value=1.6e-16  Score=127.85  Aligned_cols=130  Identities=21%  Similarity=0.252  Sum_probs=103.5

Q ss_pred             eecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCC
Q 024632           67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLN  146 (265)
Q Consensus        67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  146 (265)
                      +..+++|++|++++|.++  .++.+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|+
T Consensus        62 l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~  139 (197)
T 4ezg_A           62 IEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN  139 (197)
T ss_dssp             GGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCC
T ss_pred             HhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCC
Confidence            556788888888888665  334678888888999988888876777888888899999999888877788888888899


Q ss_pred             EEEccCcc-CcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCC
Q 024632          147 VIDLHDNL-LTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK  206 (265)
Q Consensus       147 ~L~Ls~N~-l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~  206 (265)
                      +|++++|. ++ .+| .+..+++|+.|++++|++++ ++ .+..    ++.|+.+++++|+
T Consensus       140 ~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~----l~~L~~L~l~~N~  192 (197)
T 4ezg_A          140 SIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIED----FPKLNQLYAFSQT  192 (197)
T ss_dssp             EEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGG----CSSCCEEEECBC-
T ss_pred             EEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-Hhcc----CCCCCEEEeeCcc
Confidence            99998888 55 566 57888888999998888874 44 4555    7788888888886

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.67  E-value=3.1e-16  Score=123.79  Aligned_cols=114  Identities=21%  Similarity=0.193  Sum_probs=101.2

Q ss_pred             CCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEc
Q 024632           71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL  150 (265)
Q Consensus        71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  150 (265)
                      +++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence            68999999999999666667899999999999999999655666889999999999999999777777899999999999


Q ss_pred             cCccCcccCChhccCCCCCCEEEcccCCCCCCCC
Q 024632          151 HDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIP  184 (265)
Q Consensus       151 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p  184 (265)
                      ++|++++..+..+..+++|+.|++++|++++..|
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            9999996555567889999999999999998765

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.67  E-value=1.3e-16  Score=147.00  Aligned_cols=133  Identities=20%  Similarity=0.168  Sum_probs=106.0

Q ss_pred             CCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEc
Q 024632           71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL  150 (265)
Q Consensus        71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  150 (265)
                      +++++|++++|.+++..|..+.++++|++|++++|++++..|..+..+++|++|++++|.+++..|..++.+++|++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            57888899998888777778888888999999998888777778888888999999999888777777888888999999


Q ss_pred             cCccCcc-cCChhccCCCCCCEEEcccCCCCCCCC-hhhhccCCCCCCCCCCCCCCCCC
Q 024632          151 HDNLLTG-QIPQQLGLLVRLSAFDVSNNKLSGPIP-ASLGNRSGNLPKFNASSFEGNKD  207 (265)
Q Consensus       151 s~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~g~~p-~~~~~~~~~l~~l~~~~~~~N~~  207 (265)
                      ++|.+++ ..|..++.+++|+.|++++|.+.+.+| ..+.+    ++.++.+++++|..
T Consensus       106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~----l~~L~~L~L~~n~l  160 (549)
T 2z81_A          106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG----LTSLNELEIKALSL  160 (549)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT----CCEEEEEEEEETTC
T ss_pred             CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhc----ccccCeeeccCCcc
Confidence            9888885 356778888888888888888555555 35554    66666777766653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.67  E-value=3.1e-16  Score=125.89  Aligned_cols=111  Identities=24%  Similarity=0.241  Sum_probs=102.2

Q ss_pred             CCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEc
Q 024632           71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL  150 (265)
Q Consensus        71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  150 (265)
                      +++++|++++|.++ .+|..+..+++|+.|++++|.+++..+..|..+++|++|+|++|.+++..|..+..+++|++|++
T Consensus        31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L  109 (193)
T 2wfh_A           31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL  109 (193)
T ss_dssp             TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence            57999999999998 78889999999999999999999777778999999999999999999888888999999999999


Q ss_pred             cCccCcccCChhccCCCCCCEEEcccCCCCCC
Q 024632          151 HDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGP  182 (265)
Q Consensus       151 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~  182 (265)
                      ++|++++..+..|..+++|+.|++++|++...
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A          110 HGNDISVVPEGAFNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             CCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence            99999966666789999999999999999754

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.66  E-value=6e-17  Score=147.03  Aligned_cols=142  Identities=22%  Similarity=0.197  Sum_probs=93.1

Q ss_pred             eeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcC------------------------CCCCCCCC-CCcccCcc
Q 024632           66 ATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSS------------------------NALTGSIP-ADLQYLVN  120 (265)
Q Consensus        66 ~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~------------------------N~l~~~~p-~~l~~l~~  120 (265)
                      .+..+++|+.|++++|.+.+..+..+..+++|+.|++++                        |.++ .+| ..+..+++
T Consensus       171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~  249 (477)
T 2id5_A          171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVY  249 (477)
T ss_dssp             HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTT
T ss_pred             HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcCccc
Confidence            345566677777777766655555555555555555554                        5554 233 34556666


Q ss_pred             cceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCC
Q 024632          121 LAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNAS  200 (265)
Q Consensus       121 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~  200 (265)
                      |+.|++++|.+++..+..+..+++|+.|++++|++++..|..+..+++|+.|++++|++++..+..+..    ++.|+.+
T Consensus       250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~----l~~L~~L  325 (477)
T 2id5_A          250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHS----VGNLETL  325 (477)
T ss_dssp             CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSC----GGGCCEE
T ss_pred             cCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCC----CcccCEE
Confidence            777777777766555555666777777777777777666777777777777777777777544444444    6778888


Q ss_pred             CCCCCCCCCCCC
Q 024632          201 SFEGNKDLYGYP  212 (265)
Q Consensus       201 ~~~~N~~~c~~~  212 (265)
                      ++++|++.|.++
T Consensus       326 ~l~~N~l~c~c~  337 (477)
T 2id5_A          326 ILDSNPLACDCR  337 (477)
T ss_dssp             ECCSSCEECSGG
T ss_pred             EccCCCccCccc
Confidence            889998888764

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.66  E-value=1.5e-16  Score=143.34  Aligned_cols=132  Identities=21%  Similarity=0.214  Sum_probs=80.3

Q ss_pred             CCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCC-CCCcccCcccceeccccccCCCCCchHhhhCCcCCEEE
Q 024632           71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSI-PADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVID  149 (265)
Q Consensus        71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  149 (265)
                      +++++|++++|.+++..|..+.++++|++|++++|.+.+.+ +..+..+++|++|++++|.+++..|..+.++++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            45666666666666555666666666666666666665444 34466666666666666666655566666666666666


Q ss_pred             ccCccCcccCChh--ccCCCCCCEEEcccCCCCCCCChh-hhccCCCCCCCCCCCCCCCC
Q 024632          150 LHDNLLTGQIPQQ--LGLLVRLSAFDVSNNKLSGPIPAS-LGNRSGNLPKFNASSFEGNK  206 (265)
Q Consensus       150 Ls~N~l~~~~p~~--~~~l~~L~~L~l~~N~l~g~~p~~-~~~~~~~l~~l~~~~~~~N~  206 (265)
                      +++|++++..|..  +..+++|+.|++++|.+++..|.. +.+    ++.|+.+++++|.
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~----l~~L~~L~L~~n~  165 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLN----MRRFHVLDLTFNK  165 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGG----CTTCCEEECTTCC
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCC----CCcccEEeCCCCc
Confidence            6666666544433  566666666666666666555554 334    5555555665554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.66  E-value=3.3e-16  Score=123.69  Aligned_cols=130  Identities=19%  Similarity=0.219  Sum_probs=109.6

Q ss_pred             eecCCCeEEEEeeCCCccccCCccCcCC-CCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcC
Q 024632           67 TCNNGRIYKLSLTNLSLQGSISPYLSNC-TNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYL  145 (265)
Q Consensus        67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  145 (265)
                      +.+..++++|++++|.++ .+|. +..+ ++|++|++++|.+++ + ..+..+++|++|++++|.+++..+..+..+++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            445788999999999999 4555 4444 499999999999995 4 678899999999999999996555556999999


Q ss_pred             CEEEccCccCcccCCh--hccCCCCCCEEEcccCCCCCCCChh----hhccCCCCCCCCCCCCCCCC
Q 024632          146 NVIDLHDNLLTGQIPQ--QLGLLVRLSAFDVSNNKLSGPIPAS----LGNRSGNLPKFNASSFEGNK  206 (265)
Q Consensus       146 ~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~l~~N~l~g~~p~~----~~~~~~~l~~l~~~~~~~N~  206 (265)
                      ++|++++|+++ .+|.  .+..+++|+.|++++|+++ .+|..    +..    ++.++.+++++|+
T Consensus        91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~----l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYK----VPQVRVLDFQKVK  151 (176)
T ss_dssp             CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHH----CTTCSEETTEECC
T ss_pred             CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHH----CCccceeCCCcCC
Confidence            99999999997 6676  7889999999999999998 56764    666    8888888888875

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.66  E-value=2.2e-16  Score=147.31  Aligned_cols=148  Identities=16%  Similarity=0.037  Sum_probs=114.8

Q ss_pred             CCCCCCCCCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCC
Q 024632           56 CNGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEI  135 (265)
Q Consensus        56 c~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  135 (265)
                      .|.+.+..+..+.++++|++|++++|.+++..|..|.++++|++|++++|.+.+..|..+..+++|++|++++|.+++..
T Consensus        42 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~  121 (606)
T 3t6q_A           42 FNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSID  121 (606)
T ss_dssp             TCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGG
T ss_pred             CCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCC
Confidence            34555555667778888888888888888777888888888888888888888777888888888888888888888655


Q ss_pred             chHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCC--CCCCCCCCC
Q 024632          136 PPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFN--ASSFEGNKD  207 (265)
Q Consensus       136 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~--~~~~~~N~~  207 (265)
                      |..+..+++|++|++++|++++..+..+..+++|+.|++++|.+++..|..+..    ++.++  .+++++|..
T Consensus       122 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----l~~L~~l~L~l~~n~l  191 (606)
T 3t6q_A          122 FIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS----LQQATNLSLNLNGNDI  191 (606)
T ss_dssp             GSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHT----TTTCCSEEEECTTCCC
T ss_pred             cchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhh----hcccceeEEecCCCcc
Confidence            677888888888888888888633333445888888888888888777777776    55666  567777763

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.65  E-value=2.7e-16  Score=146.86  Aligned_cols=112  Identities=20%  Similarity=0.184  Sum_probs=65.2

Q ss_pred             CCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEE
Q 024632           70 NGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVID  149 (265)
Q Consensus        70 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  149 (265)
                      +++|++|++++|.+++..|..+..+++|++|+|++|.+++..|..++.+++|++|+|++|.+++..+..+..+++|++|+
T Consensus        74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  153 (597)
T 3oja_B           74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS  153 (597)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence            44555666666666554455566666666666666666654455555666666666666666533333345566666666


Q ss_pred             ccCccCcccCChhccCCCCCCEEEcccCCCCC
Q 024632          150 LHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSG  181 (265)
Q Consensus       150 Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g  181 (265)
                      +++|.+++..|..++.+++|+.|++++|.+++
T Consensus       154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  185 (597)
T 3oja_B          154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  185 (597)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred             eeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence            66666665555555666666666666666654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.65  E-value=8.9e-17  Score=138.35  Aligned_cols=115  Identities=21%  Similarity=0.258  Sum_probs=52.1

Q ss_pred             ecCCCeEEEEeeCCCccccCCccCcCC-----CCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCC--CchHh-
Q 024632           68 CNNGRIYKLSLTNLSLQGSISPYLSNC-----TNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGE--IPPQL-  139 (265)
Q Consensus        68 ~~~~~l~~L~L~~n~l~~~~p~~l~~l-----~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~p~~~-  139 (265)
                      ..+++|++|++++|.+++. |..+..+     ++|++|++++|++.+..|..+..+++|++|++++|++.+.  .|..+ 
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  196 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC  196 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred             hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence            3445555555555555533 4434333     4555555555555544444455555555555555554432  12222 


Q ss_pred             -hhCCcCCEEEccCccCcc--cCC-hhccCCCCCCEEEcccCCCCCCC
Q 024632          140 -TLCAYLNVIDLHDNLLTG--QIP-QQLGLLVRLSAFDVSNNKLSGPI  183 (265)
Q Consensus       140 -~~l~~L~~L~Ls~N~l~~--~~p-~~~~~l~~L~~L~l~~N~l~g~~  183 (265)
                       ..+++|++|++++|++++  .++ ..+..+++|+.|++++|++++..
T Consensus       197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  244 (312)
T 1wwl_A          197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA  244 (312)
T ss_dssp             TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred             hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence             444445555555554441  111 11234444555555555554433

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.64  E-value=1.1e-15  Score=120.13  Aligned_cols=108  Identities=23%  Similarity=0.193  Sum_probs=96.1

Q ss_pred             EEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCc
Q 024632           74 YKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDN  153 (265)
Q Consensus        74 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  153 (265)
                      +++++++|.++ .+|..+.  ++|++|++++|.+++..|..|..+++|++|+|++|++++..+..+..+++|++|++++|
T Consensus        12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            57899999998 5787664  89999999999999777888999999999999999999777777899999999999999


Q ss_pred             cCcccCChhccCCCCCCEEEcccCCCCCCCC
Q 024632          154 LLTGQIPQQLGLLVRLSAFDVSNNKLSGPIP  184 (265)
Q Consensus       154 ~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p  184 (265)
                      ++++..+..|..+++|+.|++++|+++...+
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            9997666679999999999999999986544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.64  E-value=1.1e-15  Score=138.11  Aligned_cols=75  Identities=20%  Similarity=0.156  Sum_probs=49.1

Q ss_pred             CCCCCCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCC
Q 024632           59 FTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAG  133 (265)
Q Consensus        59 ~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  133 (265)
                      +....+..+.++++|++|+|++|.+++..+..+.++++|++|+|++|.+++..+..+..+++|++|++++|.++.
T Consensus        87 i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  161 (452)
T 3zyi_A           87 IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES  161 (452)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE
T ss_pred             CceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcce
Confidence            333334555566777777777777776666667777777777777777774444456666777777777766653

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.64  E-value=8.1e-17  Score=140.78  Aligned_cols=121  Identities=21%  Similarity=0.187  Sum_probs=54.1

Q ss_pred             eecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCch--HhhhCCc
Q 024632           67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPP--QLTLCAY  144 (265)
Q Consensus        67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~  144 (265)
                      +.++++|++|++++|.+++..|..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++ +|.  .+..+++
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~  150 (353)
T 2z80_A           72 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTK  150 (353)
T ss_dssp             TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTT
T ss_pred             hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCC
Confidence            3344445555555554444334444444455555555554442211224444445555555554442 222  3444444


Q ss_pred             CCEEEccCcc-CcccCChhccCCCCCCEEEcccCCCCCCCChhhh
Q 024632          145 LNVIDLHDNL-LTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLG  188 (265)
Q Consensus       145 L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~  188 (265)
                      |++|++++|+ +.+..|..+..+++|+.|++++|.+++..|..+.
T Consensus       151 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~  195 (353)
T 2z80_A          151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK  195 (353)
T ss_dssp             CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred             CcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHh
Confidence            4444444442 3333334444444455555555554444444443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.64  E-value=3.7e-16  Score=144.45  Aligned_cols=140  Identities=18%  Similarity=0.158  Sum_probs=94.5

Q ss_pred             CCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhC
Q 024632           63 LPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLC  142 (265)
Q Consensus        63 ~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l  142 (265)
                      .+..+.++++|++|++++|.+++..+..+.++++|++|++++|.+++..|..|..+++|++|++++|.+++..+..++.+
T Consensus        44 ~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l  123 (570)
T 2z63_A           44 GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL  123 (570)
T ss_dssp             CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTC
T ss_pred             ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCcccccc
Confidence            34455566777777777777776556667777777777777777775555667777777777777777775444457777


Q ss_pred             CcCCEEEccCccCcc-cCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCC----CCCCCCCCC
Q 024632          143 AYLNVIDLHDNLLTG-QIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKF----NASSFEGNK  206 (265)
Q Consensus       143 ~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l----~~~~~~~N~  206 (265)
                      ++|++|++++|.+++ .+|..++.+++|+.|++++|.+++..|..+..    ++.+    ..+++++|.
T Consensus       124 ~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----l~~L~~~~~~L~l~~n~  188 (570)
T 2z63_A          124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV----LHQMPLLNLSLDLSLNP  188 (570)
T ss_dssp             TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHH----HHTCTTCCCEEECTTCC
T ss_pred             ccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccc----hhccchhhhhcccCCCC
Confidence            777777777777765 45777777777777777777777665665555    2233    345555654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.64  E-value=8.5e-16  Score=148.96  Aligned_cols=148  Identities=22%  Similarity=0.164  Sum_probs=108.6

Q ss_pred             CCCCCCCCceeecCCCeEEEEeeCCCccccC-CccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCC
Q 024632           57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSI-SPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEI  135 (265)
Q Consensus        57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  135 (265)
                      |.+....+..+.++++|++|+|++|...+.+ |..+.++++|++|+|++|.+.+..|..|..+++|++|+|++|.+++.+
T Consensus        34 N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~  113 (844)
T 3j0a_A           34 NYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAV  113 (844)
T ss_dssp             CCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCC
T ss_pred             CcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCccc
Confidence            3444445566677888888888888655555 667888888888888888888777888888888888888888888766


Q ss_pred             chH--hhhCCcCCEEEccCccCcccCC-hhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCC
Q 024632          136 PPQ--LTLCAYLNVIDLHDNLLTGQIP-QQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK  206 (265)
Q Consensus       136 p~~--~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~  206 (265)
                      |..  +..+++|++|++++|.+++..| ..++++++|+.|++++|.+++..|..+..+..  +.++.+++++|.
T Consensus       114 ~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~--~~L~~L~L~~n~  185 (844)
T 3j0a_A          114 LKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG--KTLSFFSLAANS  185 (844)
T ss_dssp             STTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH--CSSCCCEECCSB
T ss_pred             ccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC--CccceEECCCCc
Confidence            655  7788888888888888876544 56788888888888888888777777765210  445555555554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.64  E-value=4.6e-16  Score=121.71  Aligned_cols=123  Identities=28%  Similarity=0.286  Sum_probs=106.5

Q ss_pred             CCCCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCC-chHh
Q 024632           61 SYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEI-PPQL  139 (265)
Q Consensus        61 ~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~~  139 (265)
                      +..|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.. +..+
T Consensus        39 ~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l  116 (168)
T 2ell_A           39 GKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPL  116 (168)
T ss_dssp             TBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGG
T ss_pred             hhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHH
Confidence            35777778899999999999999954  77999999999999999999778877778999999999999999532 2788


Q ss_pred             hhCCcCCEEEccCccCcccCC---hhccCCCCCCEEEcccCCCCCCCChh
Q 024632          140 TLCAYLNVIDLHDNLLTGQIP---QQLGLLVRLSAFDVSNNKLSGPIPAS  186 (265)
Q Consensus       140 ~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~l~~N~l~g~~p~~  186 (265)
                      ..+++|++|++++|.+++..+   ..+..+++|+.|++++|.+. .+|.+
T Consensus       117 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~  165 (168)
T 2ell_A          117 KKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS  165 (168)
T ss_dssp             SSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred             hcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence            999999999999999995544   47899999999999999987 55643

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.64  E-value=1.3e-16  Score=137.28  Aligned_cols=137  Identities=20%  Similarity=0.224  Sum_probs=113.5

Q ss_pred             cCCCeEEEEeeCCCccccCCccC--cCCCCCCEEECcCCCCCCCCCCCcccC-----cccceeccccccCCCCCchHhhh
Q 024632           69 NNGRIYKLSLTNLSLQGSISPYL--SNCTNLQSLDLSSNALTGSIPADLQYL-----VNLAVLNLSANRLAGEIPPQLTL  141 (265)
Q Consensus        69 ~~~~l~~L~L~~n~l~~~~p~~l--~~l~~L~~L~Ls~N~l~~~~p~~l~~l-----~~L~~L~Ls~N~l~~~~p~~~~~  141 (265)
                      ++++|++|++++|.+++.+|..+  ..+++|++|++++|.+++. |..+..+     ++|++|++++|.+++..|..++.
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~  171 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV  171 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence            47899999999999998888876  8999999999999999966 8777777     89999999999999888889999


Q ss_pred             CCcCCEEEccCccCccc--CChhc--cCCCCCCEEEcccCCCCC--CCChhhhccCCCCCCCCCCCCCCCCCCC
Q 024632          142 CAYLNVIDLHDNLLTGQ--IPQQL--GLLVRLSAFDVSNNKLSG--PIPASLGNRSGNLPKFNASSFEGNKDLY  209 (265)
Q Consensus       142 l~~L~~L~Ls~N~l~~~--~p~~~--~~l~~L~~L~l~~N~l~g--~~p~~~~~~~~~l~~l~~~~~~~N~~~c  209 (265)
                      +++|++|++++|++.+.  +|..+  ..+++|+.|++++|.+++  .++..+.   ..++.++.+++++|....
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~---~~l~~L~~L~Ls~N~l~~  242 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA---AARVQLQGLDLSHNSLRD  242 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH---HTTCCCSEEECTTSCCCS
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHH---hcCCCCCEEECCCCcCCc
Confidence            99999999999998865  34445  889999999999999983  2232222   126778888888886433

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.63  E-value=1.1e-15  Score=120.22  Aligned_cols=109  Identities=21%  Similarity=0.236  Sum_probs=96.7

Q ss_pred             CCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEccc
Q 024632           97 LQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSN  176 (265)
Q Consensus        97 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~  176 (265)
                      .+.+++++|.++ .+|..+.  ++|++|+|++|.+++..|..+..+++|++|++++|++++..|..|..+++|+.|++++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            578999999999 6887764  8999999999999988888999999999999999999977667789999999999999


Q ss_pred             CCCCCCCChhhhccCCCCCCCCCCCCCCCCCCCCCC
Q 024632          177 NKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYP  212 (265)
Q Consensus       177 N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~~~  212 (265)
                      |++++..|..+.+    ++.|+.+++++|++.|.++
T Consensus        88 N~l~~~~~~~~~~----l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           88 NQLKSIPRGAFDN----LKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SCCCCCCTTTTTT----CTTCCEEECCSSCBCTTBG
T ss_pred             CccCEeCHHHhcC----CCCCCEEEeCCCCCCCCch
Confidence            9999766656766    8889999999999998763

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.63  E-value=2e-15  Score=135.90  Aligned_cols=144  Identities=20%  Similarity=0.186  Sum_probs=95.4

Q ss_pred             CCCCCCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceecccc----------
Q 024632           59 FTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSA----------  128 (265)
Q Consensus        59 ~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~----------  128 (265)
                      +...-++.+.++++|++|+|++|.++...+..+..+++|++|++++|.++...+..+..+++|++|++++          
T Consensus       100 i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~  179 (440)
T 3zyj_A          100 IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG  179 (440)
T ss_dssp             CCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT
T ss_pred             CCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcc
Confidence            3333346677899999999999999966666799999999999999998854444455555555555554          


Q ss_pred             ---------------ccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCC
Q 024632          129 ---------------NRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGN  193 (265)
Q Consensus       129 ---------------N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~  193 (265)
                                     |.++ .+| .+..+++|++|++++|++++..|..|..+++|+.|++++|++++..|..+.+    
T Consensus       180 ~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----  253 (440)
T 3zyj_A          180 AFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN----  253 (440)
T ss_dssp             TTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTT----
T ss_pred             hhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcC----
Confidence                           4444 233 2444555555556666665555556666666666666666666555555544    


Q ss_pred             CCCCCCCCCCCCCCC
Q 024632          194 LPKFNASSFEGNKDL  208 (265)
Q Consensus       194 l~~l~~~~~~~N~~~  208 (265)
                      ++.|+.+++++|...
T Consensus       254 l~~L~~L~L~~N~l~  268 (440)
T 3zyj_A          254 LQSLVEINLAHNNLT  268 (440)
T ss_dssp             CTTCCEEECTTSCCC
T ss_pred             CCCCCEEECCCCCCC
Confidence            677777888888643

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.63  E-value=5.9e-16  Score=137.00  Aligned_cols=114  Identities=19%  Similarity=0.174  Sum_probs=72.3

Q ss_pred             ecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCE
Q 024632           68 CNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNV  147 (265)
Q Consensus        68 ~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  147 (265)
                      ..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.++...+..+..+++|++
T Consensus        66 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~  145 (390)
T 3o6n_A           66 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT  145 (390)
T ss_dssp             HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcE
Confidence            34566666666666666555556666666666666666666555555666666666666666666333333466666666


Q ss_pred             EEccCccCcccCChhccCCCCCCEEEcccCCCCC
Q 024632          148 IDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSG  181 (265)
Q Consensus       148 L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g  181 (265)
                      |++++|.+++..|..+..+++|+.|++++|.+++
T Consensus       146 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  179 (390)
T 3o6n_A          146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  179 (390)
T ss_dssp             EECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred             EECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence            6666666665555566666666666666666664

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.63  E-value=8.9e-16  Score=132.85  Aligned_cols=133  Identities=19%  Similarity=0.228  Sum_probs=81.5

Q ss_pred             eecCCCeEEEEeeCCCcc--ccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCc
Q 024632           67 TCNNGRIYKLSLTNLSLQ--GSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAY  144 (265)
Q Consensus        67 ~~~~~~l~~L~L~~n~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  144 (265)
                      +..+++|++|++++|.+.  +..+..+..+++|++|++++|.++ .+|..+.  ++|++|++++|.+++..|..+..+++
T Consensus       141 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~  217 (330)
T 1xku_A          141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNN  217 (330)
T ss_dssp             HTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTT
T ss_pred             hcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCC
Confidence            334555666666666554  234455556666666666666665 3444432  56666666666666555666666677


Q ss_pred             CCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCC
Q 024632          145 LNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD  207 (265)
Q Consensus       145 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~  207 (265)
                      |++|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..    ++.++.+++++|+.
T Consensus       218 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~----l~~L~~L~l~~N~i  275 (330)
T 1xku_A          218 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD----HKYIQVVYLHNNNI  275 (330)
T ss_dssp             CCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT----CSSCCEEECCSSCC
T ss_pred             CCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc----CCCcCEEECCCCcC
Confidence            777777777776655556666677777777777776 56665544    55666666666653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.63  E-value=8.7e-16  Score=145.16  Aligned_cols=149  Identities=17%  Similarity=0.121  Sum_probs=111.0

Q ss_pred             CCCCCCCCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCc
Q 024632           57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIP  136 (265)
Q Consensus        57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  136 (265)
                      |.+.+..+..+.++++|++|++++|.+++..|..+.++++|++|++++|.+++..+..|..+++|++|++++|.+++..|
T Consensus        35 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~  114 (680)
T 1ziw_A           35 NQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN  114 (680)
T ss_dssp             SCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCS
T ss_pred             CCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccCh
Confidence            34444444556777888888888888887777778888888888888888884333457888888888888888886666


Q ss_pred             hHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCC
Q 024632          137 PQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD  207 (265)
Q Consensus       137 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~  207 (265)
                      ..++++++|++|++++|.+++..|..++.+++|++|++++|.+++..|..+...  ..+.++.+++++|..
T Consensus       115 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~--~~~~L~~L~L~~n~l  183 (680)
T 1ziw_A          115 NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIF--ANSSLKKLELSSNQI  183 (680)
T ss_dssp             CTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGG--TTCEESEEECTTCCC
T ss_pred             hHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcc--ccccccEEECCCCcc
Confidence            778888888888888888887777777888888888888888886666555431  146677778888753

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.63  E-value=8.6e-16  Score=143.48  Aligned_cols=134  Identities=14%  Similarity=0.142  Sum_probs=110.7

Q ss_pred             cCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEE
Q 024632           69 NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVI  148 (265)
Q Consensus        69 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  148 (265)
                      .+.+++.+++++|.+....+..+..+++|+.|++++|.+++..|..+..+++|++|+|++|.+++..|..++.+++|++|
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            35778899999998885555557888999999999999997777788999999999999999998777788899999999


Q ss_pred             EccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCC
Q 024632          149 DLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK  206 (265)
Q Consensus       149 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~  206 (265)
                      ++++|.+++..+..|+.+++|++|++++|.+++..|..+.+    ++.|+.+++++|.
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----l~~L~~L~L~~N~  182 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA----TTSLQNLQLSSNR  182 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTT----CTTCCEEECTTSC
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhc----CCcCcEEECcCCC
Confidence            99999999555555688999999999999999877777766    6666677777665

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.63  E-value=1.3e-16  Score=147.09  Aligned_cols=151  Identities=17%  Similarity=0.122  Sum_probs=124.7

Q ss_pred             CCCCCCCCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCC-CC
Q 024632           57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAG-EI  135 (265)
Q Consensus        57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~  135 (265)
                      |.+.+..+..+.++++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++ ..
T Consensus        36 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  115 (549)
T 2z81_A           36 NKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGV  115 (549)
T ss_dssp             SCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCS
T ss_pred             CccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccch
Confidence            44555556677889999999999999998888889999999999999999997666669999999999999999986 35


Q ss_pred             chHhhhCCcCCEEEccCccCcccCC-hhccCCCCCCEEEcccCCCCCCCChhhhccC--------------------CCC
Q 024632          136 PPQLTLCAYLNVIDLHDNLLTGQIP-QQLGLLVRLSAFDVSNNKLSGPIPASLGNRS--------------------GNL  194 (265)
Q Consensus       136 p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~--------------------~~l  194 (265)
                      |..++.+++|++|++++|.+.+.+| ..+..+++|++|++++|.+++.+|..+..+.                    ..+
T Consensus       116 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l  195 (549)
T 2z81_A          116 TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADIL  195 (549)
T ss_dssp             SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHST
T ss_pred             hhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhc
Confidence            6788999999999999999555555 6789999999999999999988888776532                    125


Q ss_pred             CCCCCCCCCCCCC
Q 024632          195 PKFNASSFEGNKD  207 (265)
Q Consensus       195 ~~l~~~~~~~N~~  207 (265)
                      +.++.+++++|..
T Consensus       196 ~~L~~L~L~~n~l  208 (549)
T 2z81_A          196 SSVRYLELRDTNL  208 (549)
T ss_dssp             TTBSEEEEESCBC
T ss_pred             ccccEEEccCCcc
Confidence            6677777777763

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.63  E-value=3.1e-16  Score=126.05  Aligned_cols=130  Identities=17%  Similarity=0.289  Sum_probs=114.5

Q ss_pred             ecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCE
Q 024632           68 CNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNV  147 (265)
Q Consensus        68 ~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  147 (265)
                      ..++++++|++++|.++ .+| .+..+++|++|++++|.++ . +..+..+++|++|++++|.+++..|..+..+++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            45678999999999999 667 6899999999999999776 3 347889999999999999999777888999999999


Q ss_pred             EEccCccCcccCChhccCCCCCCEEEcccCC-CCCCCChhhhccCCCCCCCCCCCCCCCCC
Q 024632          148 IDLHDNLLTGQIPQQLGLLVRLSAFDVSNNK-LSGPIPASLGNRSGNLPKFNASSFEGNKD  207 (265)
Q Consensus       148 L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~-l~g~~p~~~~~~~~~l~~l~~~~~~~N~~  207 (265)
                      |++++|++++..|..+..+++|+.|++++|. ++ .+| .+..    ++.|+.+++++|..
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~----l~~L~~L~l~~n~i  171 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKT----LPELKSLNIQFDGV  171 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGG----CSSCCEEECTTBCC
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcC----CCCCCEEECCCCCC
Confidence            9999999998888999999999999999998 65 566 5665    88899999999874

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.63  E-value=1.7e-15  Score=131.07  Aligned_cols=143  Identities=22%  Similarity=0.231  Sum_probs=121.7

Q ss_pred             CCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhC
Q 024632           63 LPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLC  142 (265)
Q Consensus        63 ~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l  142 (265)
                      .+..+..+++|++|++++|.++ .+|..+.  ++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+
T Consensus       163 ~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  239 (330)
T 1xku_A          163 ENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT  239 (330)
T ss_dssp             CTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred             ChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCC
Confidence            4556677899999999999998 5676554  899999999999997778889999999999999999998777789999


Q ss_pred             CcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccC--CCCCCCCCCCCCCCCCCC
Q 024632          143 AYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRS--GNLPKFNASSFEGNKDLY  209 (265)
Q Consensus       143 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~--~~l~~l~~~~~~~N~~~c  209 (265)
                      ++|++|++++|+++ .+|..+..+++|+.|++++|++++..+..+....  ...+.+..+++.+|+..+
T Consensus       240 ~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~  307 (330)
T 1xku_A          240 PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  307 (330)
T ss_dssp             TTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             CCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence            99999999999999 8899999999999999999999966555554321  124567788999998754

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.62  E-value=3.5e-16  Score=149.29  Aligned_cols=123  Identities=32%  Similarity=0.458  Sum_probs=105.3

Q ss_pred             CCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhC
Q 024632           63 LPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLC  142 (265)
Q Consensus        63 ~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l  142 (265)
                      .++.+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..++.+
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  292 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC  292 (727)
T ss_dssp             ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred             ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence            3556677888999999999998 78888889999999999999999 88988999999999999999999 788899999


Q ss_pred             CcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhc
Q 024632          143 AYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGN  189 (265)
Q Consensus       143 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~  189 (265)
                      ++|++|+|++|.++ .+|..|+.+++|+.|+|++|.+++.+|..+..
T Consensus       293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  338 (727)
T 4b8c_D          293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE  338 (727)
T ss_dssp             TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred             CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence            99999999999998 88888999999999999999999888877644

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.62  E-value=1.4e-15  Score=134.54  Aligned_cols=134  Identities=14%  Similarity=0.142  Sum_probs=100.4

Q ss_pred             cCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEE
Q 024632           69 NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVI  148 (265)
Q Consensus        69 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  148 (265)
                      .+++++.|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            35778888888888874333446778888888888888886556678888888888888888887777778888888888


Q ss_pred             EccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCC
Q 024632          149 DLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK  206 (265)
Q Consensus       149 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~  206 (265)
                      ++++|+++...+..+..+++|++|++++|.+++..|..+.+    ++.++.+++++|.
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----l~~L~~L~l~~n~  176 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA----TTSLQNLQLSSNR  176 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSS----CTTCCEEECCSSC
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccC----CCCCCEEECCCCc
Confidence            88888888333334577888888888888888666666655    5666666666665

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.62  E-value=2.9e-15  Score=118.29  Aligned_cols=106  Identities=25%  Similarity=0.255  Sum_probs=94.0

Q ss_pred             EEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCc
Q 024632           74 YKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDN  153 (265)
Q Consensus        74 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  153 (265)
                      +.+++++|+++ .+|..+.  ++|++|++++|.+++..|..|..+++|++|+|++|++++..+..+..+++|++|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            67999999997 7887664  89999999999999877888999999999999999999766666789999999999999


Q ss_pred             cCcccCChhccCCCCCCEEEcccCCCCCC
Q 024632          154 LLTGQIPQQLGLLVRLSAFDVSNNKLSGP  182 (265)
Q Consensus       154 ~l~~~~p~~~~~l~~L~~L~l~~N~l~g~  182 (265)
                      ++++..+..+..+++|+.|++++|++...
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            99965555689999999999999999854

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.62  E-value=1.4e-15  Score=147.35  Aligned_cols=135  Identities=20%  Similarity=0.186  Sum_probs=121.4

Q ss_pred             cCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCC-CCCcccCcccceeccccccCCCCCchHhhhCCcCCE
Q 024632           69 NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSI-PADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNV  147 (265)
Q Consensus        69 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  147 (265)
                      -.+++++|+|++|.+++..|..+.++++|++|++++|...+.+ |..|..+++|++|+|++|.+++..|..+.++++|++
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  101 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE  101 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred             CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence            4578999999999999888999999999999999999766666 778999999999999999999888999999999999


Q ss_pred             EEccCccCcccCChh--ccCCCCCCEEEcccCCCCCCCC-hhhhccCCCCCCCCCCCCCCCCC
Q 024632          148 IDLHDNLLTGQIPQQ--LGLLVRLSAFDVSNNKLSGPIP-ASLGNRSGNLPKFNASSFEGNKD  207 (265)
Q Consensus       148 L~Ls~N~l~~~~p~~--~~~l~~L~~L~l~~N~l~g~~p-~~~~~~~~~l~~l~~~~~~~N~~  207 (265)
                      |++++|.+++.+|..  +..+++|++|++++|.+++..| ..+.+    ++.|+.+++++|..
T Consensus       102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~----L~~L~~L~Ls~N~i  160 (844)
T 3j0a_A          102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGK----LNSLKSIDFSSNQI  160 (844)
T ss_dssp             EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGT----CSSCCEEEEESSCC
T ss_pred             eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhh----CCCCCEEECCCCcC
Confidence            999999999877765  8999999999999999997655 46666    88899999999864

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.62  E-value=1.1e-15  Score=133.66  Aligned_cols=132  Identities=20%  Similarity=0.231  Sum_probs=113.0

Q ss_pred             CCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEc
Q 024632           71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL  150 (265)
Q Consensus        71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  150 (265)
                      +++++|++++|.+++..+..+.++++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence            58999999999999766668999999999999999999777788999999999999999999655556899999999999


Q ss_pred             cCccCcccCCh--hccCCCCCCEEEcccC-CCCCCCChhhhccCCCCCCCCCCCCCCCCC
Q 024632          151 HDNLLTGQIPQ--QLGLLVRLSAFDVSNN-KLSGPIPASLGNRSGNLPKFNASSFEGNKD  207 (265)
Q Consensus       151 s~N~l~~~~p~--~~~~l~~L~~L~l~~N-~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~  207 (265)
                      ++|+++ .+|.  .+..+++|+.|++++| .+.+..|..+.+    ++.++.+++++|..
T Consensus       132 ~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~----l~~L~~L~l~~n~l  186 (353)
T 2z80_A          132 LGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG----LTFLEELEIDASDL  186 (353)
T ss_dssp             TTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT----CCEEEEEEEEETTC
T ss_pred             CCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccC----CCCCCEEECCCCCc
Confidence            999999 4554  7889999999999999 466555666665    67777777777753

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.61  E-value=2.1e-15  Score=130.63  Aligned_cols=142  Identities=18%  Similarity=0.137  Sum_probs=67.4

Q ss_pred             eeecCCCeEEEEeeCCCcc--ccCCccCcCC--------------------CCCCEEECcCCCCCCCCCCCcccCcccce
Q 024632           66 ATCNNGRIYKLSLTNLSLQ--GSISPYLSNC--------------------TNLQSLDLSSNALTGSIPADLQYLVNLAV  123 (265)
Q Consensus        66 ~~~~~~~l~~L~L~~n~l~--~~~p~~l~~l--------------------~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  123 (265)
                      .+..+++|++|++++|.++  +..+..+..+                    ++|++|++++|.+++..+..+..+++|++
T Consensus       142 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~  221 (332)
T 2ft3_A          142 VFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYR  221 (332)
T ss_dssp             GGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSC
T ss_pred             HhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCE
Confidence            3445556666666666653  2333333333                    23444444444444333344445555555


Q ss_pred             eccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccC--CCCCCCCCCC
Q 024632          124 LNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRS--GNLPKFNASS  201 (265)
Q Consensus       124 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~--~~l~~l~~~~  201 (265)
                      |++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++++..+..+....  ...+.++.++
T Consensus       222 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~  300 (332)
T 2ft3_A          222 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGIS  300 (332)
T ss_dssp             CBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEE
T ss_pred             EECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceE
Confidence            555555555444444555555555555555555 4455555555555555555555533333333211  1123344455


Q ss_pred             CCCCCCC
Q 024632          202 FEGNKDL  208 (265)
Q Consensus       202 ~~~N~~~  208 (265)
                      +.+|+..
T Consensus       301 l~~N~~~  307 (332)
T 2ft3_A          301 LFNNPVP  307 (332)
T ss_dssp             CCSSSSC
T ss_pred             eecCccc
Confidence            5555543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.61  E-value=7.5e-16  Score=146.97  Aligned_cols=115  Identities=29%  Similarity=0.353  Sum_probs=101.4

Q ss_pred             cCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccC
Q 024632           86 SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGL  165 (265)
Q Consensus        86 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  165 (265)
                      ..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..++.+++|++|+|++|.|+ .+|..++.
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~  291 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS  291 (727)
T ss_dssp             -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred             cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence            34677889999999999999999 88888889999999999999999 89999999999999999999999 88999999


Q ss_pred             CCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCC
Q 024632          166 LVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDL  208 (265)
Q Consensus       166 l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~  208 (265)
                      +++|++|+|++|.++ .+|..+++    ++.|+.+++++|+..
T Consensus       292 l~~L~~L~L~~N~l~-~lp~~~~~----l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          292 CFQLKYFYFFDNMVT-TLPWEFGN----LCNLQFLGVEGNPLE  329 (727)
T ss_dssp             GTTCSEEECCSSCCC-CCCSSTTS----CTTCCCEECTTSCCC
T ss_pred             CCCCCEEECCCCCCC-ccChhhhc----CCCccEEeCCCCccC
Confidence            999999999999997 88988777    888999999999854

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.61  E-value=1.7e-16  Score=144.90  Aligned_cols=133  Identities=22%  Similarity=0.133  Sum_probs=82.8

Q ss_pred             CCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcc-cCcccceeccccccCCCCCchHhhhCCcCCEE
Q 024632           70 NGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQ-YLVNLAVLNLSANRLAGEIPPQLTLCAYLNVI  148 (265)
Q Consensus        70 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  148 (265)
                      +++|++|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|++|+|++|.+++. |. ...+++|++|
T Consensus       119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L  196 (487)
T 3oja_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTL  196 (487)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEE
T ss_pred             cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEE
Confidence            34556666666666655555566666666666666666655555554 566666666666666633 22 2246667777


Q ss_pred             EccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCCC
Q 024632          149 DLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYG  210 (265)
Q Consensus       149 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~  210 (265)
                      ++++|.+++ +|..+..+++|+.|++++|.+++ +|..+..    ++.+..+++++|+..|+
T Consensus       197 ~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~----l~~L~~L~l~~N~l~c~  252 (487)
T 3oja_A          197 DLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRF----SQNLEHFDLRGNGFHCG  252 (487)
T ss_dssp             ECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCC----CTTCCEEECTTCCBCHH
T ss_pred             ECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhcc----CCCCCEEEcCCCCCcCc
Confidence            777777764 33346667777777777777763 5655544    66777777888877764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.61  E-value=7.4e-16  Score=143.04  Aligned_cols=108  Identities=27%  Similarity=0.263  Sum_probs=89.3

Q ss_pred             CeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEcc
Q 024632           72 RIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLH  151 (265)
Q Consensus        72 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  151 (265)
                      .++.|++++|.+++ +|. +..+++|+.|+|++|.++ .+|..++.+++|+.|+|++|.+++ +| .++.+++|++|+++
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence            47788888888884 665 888888888888888888 788888888888888888888885 66 78888888888888


Q ss_pred             CccCcccC-ChhccCCCCCCEEEcccCCCCCCCC
Q 024632          152 DNLLTGQI-PQQLGLLVRLSAFDVSNNKLSGPIP  184 (265)
Q Consensus       152 ~N~l~~~~-p~~~~~l~~L~~L~l~~N~l~g~~p  184 (265)
                      +|++++.. |..++.+++|+.|++++|++++..|
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            88888665 8888888888888888888886544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.61  E-value=9e-16  Score=126.89  Aligned_cols=134  Identities=22%  Similarity=0.205  Sum_probs=66.7

Q ss_pred             eeecCCCeEEEEeeCCC-ccccCCccCcCCCCCCEEECcC-CCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCC
Q 024632           66 ATCNNGRIYKLSLTNLS-LQGSISPYLSNCTNLQSLDLSS-NALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCA  143 (265)
Q Consensus        66 ~~~~~~~l~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  143 (265)
                      .+.++++|++|++++|. ++...+..+.++++|++|++++ |.+++..+..|..+++|++|++++|.+++ +|. +..++
T Consensus        50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~  127 (239)
T 2xwt_C           50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVY  127 (239)
T ss_dssp             TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCC
T ss_pred             HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccc
Confidence            33444555555555554 4433333455555555555555 55553333445555555555555555553 343 44555


Q ss_pred             cCC---EEEccCc-cCcccCChhccCCCCCC-EEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCC
Q 024632          144 YLN---VIDLHDN-LLTGQIPQQLGLLVRLS-AFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK  206 (265)
Q Consensus       144 ~L~---~L~Ls~N-~l~~~~p~~~~~l~~L~-~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~  206 (265)
                      +|+   +|++++| .+++..+..|..+++|+ .|++++|.++ .+|.....    .+.++.+++++|+
T Consensus       128 ~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~----~~~L~~L~L~~n~  190 (239)
T 2xwt_C          128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFN----GTKLDAVYLNKNK  190 (239)
T ss_dssp             BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTT----TCEEEEEECTTCT
T ss_pred             ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcC----CCCCCEEEcCCCC
Confidence            554   5555555 55543334455555555 5555555555 44443322    1344555555553

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.61  E-value=5.4e-16  Score=128.21  Aligned_cols=107  Identities=17%  Similarity=0.208  Sum_probs=49.3

Q ss_pred             CeEEEEeeCCCccccCCccCcCCCCCCEEECcCCC-CCCCCCCCcccCcccceecccc-ccCCCCCchHhhhCCcCCEEE
Q 024632           72 RIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNA-LTGSIPADLQYLVNLAVLNLSA-NRLAGEIPPQLTLCAYLNVID  149 (265)
Q Consensus        72 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~  149 (265)
                      ++++|++++|++++..+..+..+++|++|++++|. +++..+..|..+++|++|++++ |.+++..+..+..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            44455555555543333344445555555555553 4422223444445555555554 444433333444444555555


Q ss_pred             ccCccCcccCChhccCCCCCC---EEEcccC-CCC
Q 024632          150 LHDNLLTGQIPQQLGLLVRLS---AFDVSNN-KLS  180 (265)
Q Consensus       150 Ls~N~l~~~~p~~~~~l~~L~---~L~l~~N-~l~  180 (265)
                      +++|++++ +|. +..+++|+   .|++++| .++
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~  144 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMT  144 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCC
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchh
Confidence            55555442 343 44444444   5555555 444

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.60  E-value=4.4e-15  Score=128.62  Aligned_cols=86  Identities=26%  Similarity=0.281  Sum_probs=40.3

Q ss_pred             eecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCC
Q 024632           67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLN  146 (265)
Q Consensus        67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  146 (265)
                      +.++++|++|++++|.+++..|..+..+++|++|++++|.++ .+|..+.  ++|++|++++|.+++..+..+..+++|+
T Consensus        74 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~  150 (332)
T 2ft3_A           74 FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMN  150 (332)
T ss_dssp             TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCC
T ss_pred             hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCC
Confidence            334444555555555554444444455555555555555544 3443332  3444444444444433333344455555


Q ss_pred             EEEccCccC
Q 024632          147 VIDLHDNLL  155 (265)
Q Consensus       147 ~L~Ls~N~l  155 (265)
                      +|++++|.+
T Consensus       151 ~L~l~~n~l  159 (332)
T 2ft3_A          151 CIEMGGNPL  159 (332)
T ss_dssp             EEECCSCCC
T ss_pred             EEECCCCcc
Confidence            555555544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.60  E-value=4.2e-15  Score=117.31  Aligned_cols=107  Identities=19%  Similarity=0.196  Sum_probs=94.5

Q ss_pred             CEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccC
Q 024632           98 QSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNN  177 (265)
Q Consensus        98 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N  177 (265)
                      +.+++++|.++ .+|..+.  ++|++|+|++|.+++..|..+..+++|++|+|++|++++..+..|..+++|+.|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            78999999997 8888765  89999999999999888889999999999999999999665566789999999999999


Q ss_pred             CCCCCCChhhhccCCCCCCCCCCCCCCCCCCCCC
Q 024632          178 KLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGY  211 (265)
Q Consensus       178 ~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~~  211 (265)
                      ++++..+..+..    ++.|+.+++++|++.|.+
T Consensus        92 ~l~~l~~~~~~~----l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           92 HLKSIPRGAFDN----LKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             CCCCCCTTTTTT----CTTCSEEECCSSCBCTTB
T ss_pred             ccceeCHHHhcc----ccCCCEEEeCCCCccccc
Confidence            999655555666    889999999999998865

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.59  E-value=5.4e-16  Score=133.26  Aligned_cols=131  Identities=18%  Similarity=0.159  Sum_probs=105.0

Q ss_pred             cCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCC--C--CCCcccCcccceeccccccCCCCCch----Hhh
Q 024632           69 NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGS--I--PADLQYLVNLAVLNLSANRLAGEIPP----QLT  140 (265)
Q Consensus        69 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~--p~~l~~l~~L~~L~Ls~N~l~~~~p~----~~~  140 (265)
                      .+++|++|++++|.+.+..+..+..+++|++|++++|++.+.  +  +..+..+++|++|++++|.++ .++.    .+.
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~  221 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAA  221 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHh
Confidence            477899999999999877778888999999999999987642  2  233467889999999999987 4444    257


Q ss_pred             hCCcCCEEEccCccCcccCChhccCC---CCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCC
Q 024632          141 LCAYLNVIDLHDNLLTGQIPQQLGLL---VRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD  207 (265)
Q Consensus       141 ~l~~L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~  207 (265)
                      .+++|++|++++|++++..|..+..+   ++|++|++++|+++ .+|..+.      +.++.+++++|..
T Consensus       222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~------~~L~~L~Ls~N~l  284 (310)
T 4glp_A          222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP------AKLRVLDLSSNRL  284 (310)
T ss_dssp             HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC------SCCSCEECCSCCC
T ss_pred             cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc------CCCCEEECCCCcC
Confidence            78999999999999998778777776   69999999999998 6777542      5778888988874

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.59  E-value=2.1e-15  Score=129.59  Aligned_cols=148  Identities=16%  Similarity=0.074  Sum_probs=113.3

Q ss_pred             CCCCCCcee--ecCCCeEEEEeeCCCccccCC----ccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCC
Q 024632           59 FTSYLPGAT--CNNGRIYKLSLTNLSLQGSIS----PYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA  132 (265)
Q Consensus        59 ~~~~~~~~~--~~~~~l~~L~L~~n~l~~~~p----~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  132 (265)
                      +.+..|..+  ..+++|++|++++|.+++..+    ..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.
T Consensus       103 l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  182 (310)
T 4glp_A          103 ITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGL  182 (310)
T ss_dssp             CBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTC
T ss_pred             eccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCc
Confidence            333445554  678889999999999986554    33557889999999999998777788889999999999999876


Q ss_pred             CC--Cc--hHhhhCCcCCEEEccCccCcccCCh----hccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCC
Q 024632          133 GE--IP--PQLTLCAYLNVIDLHDNLLTGQIPQ----QLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEG  204 (265)
Q Consensus       133 ~~--~p--~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~  204 (265)
                      +.  ++  ..+..+++|++|++++|+++ .+|.    .+..+++|++|++++|++++..|..+..+. .++.|+.+++++
T Consensus       183 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-~~~~L~~L~Ls~  260 (310)
T 4glp_A          183 GERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM-WSSALNSLNLSF  260 (310)
T ss_dssp             HHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC-CCTTCCCEECCS
T ss_pred             cchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc-CcCcCCEEECCC
Confidence            42  21  22367889999999999997 3443    256788999999999999988788777632 136888888988


Q ss_pred             CCCC
Q 024632          205 NKDL  208 (265)
Q Consensus       205 N~~~  208 (265)
                      |...
T Consensus       261 N~l~  264 (310)
T 4glp_A          261 AGLE  264 (310)
T ss_dssp             SCCC
T ss_pred             CCCC
Confidence            8754

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.59  E-value=5.5e-16  Score=133.67  Aligned_cols=106  Identities=19%  Similarity=0.183  Sum_probs=57.3

Q ss_pred             CCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHh-hhCCcCCEEEccCccCcccCChhccCCCCCCEE
Q 024632           94 CTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQL-TLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAF  172 (265)
Q Consensus        94 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  172 (265)
                      +++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++. |. ...+++|+.|
T Consensus       119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L  196 (317)
T 3o53_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTL  196 (317)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEE
T ss_pred             cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEE
Confidence            4556666666666665444455566666666666666665444444 2455666666666665532 22 2235555556


Q ss_pred             EcccCCCCCCCChhhhccCCCCCCCCCCCCCCCC
Q 024632          173 DVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK  206 (265)
Q Consensus       173 ~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~  206 (265)
                      ++++|++++ +|..+..    ++.++.+++++|.
T Consensus       197 ~Ls~N~l~~-l~~~~~~----l~~L~~L~L~~N~  225 (317)
T 3o53_A          197 DLSSNKLAF-MGPEFQS----AAGVTWISLRNNK  225 (317)
T ss_dssp             ECCSSCCCE-ECGGGGG----GTTCSEEECTTSC
T ss_pred             ECCCCcCCc-chhhhcc----cCcccEEECcCCc
Confidence            665555553 3333443    4445555555554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.58  E-value=1.9e-15  Score=138.45  Aligned_cols=134  Identities=21%  Similarity=0.258  Sum_probs=106.8

Q ss_pred             ecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCC--CCCCCcccCcccceeccccccCCCCCchH-hhhCCc
Q 024632           68 CNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTG--SIPADLQYLVNLAVLNLSANRLAGEIPPQ-LTLCAY  144 (265)
Q Consensus        68 ~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~  144 (265)
                      ..+++|++|++++|.+++..|..+..+++|++|++++|++++  .+|..+..+++|++|++++|.+++.+|.. +..+++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            356788888888888887778888888888888888888875  44566778888888888888888656654 667788


Q ss_pred             CCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCC
Q 024632          145 LNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDL  208 (265)
Q Consensus       145 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~  208 (265)
                      |++|++++|++++..|..+.  ++|+.|++++|+++ .+|..+..    ++.++.+++++|...
T Consensus       401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~----l~~L~~L~L~~N~l~  457 (520)
T 2z7x_B          401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVK----LEALQELNVASNQLK  457 (520)
T ss_dssp             CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGG----CTTCCEEECCSSCCC
T ss_pred             CCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhc----CCCCCEEECCCCcCC
Confidence            88888888888877776554  68889999999988 78887776    888999999999754

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.58  E-value=5.1e-16  Score=141.69  Aligned_cols=148  Identities=22%  Similarity=0.247  Sum_probs=121.1

Q ss_pred             CCCCCCCCceeecCCCeEEEEeeCCCccccCCccCc-CCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCC
Q 024632           57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLS-NCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEI  135 (265)
Q Consensus        57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  135 (265)
                      |.+.+..|..+..+++|++|++++|.+++..|..+. .+++|+.|+|++|.+++. |. ...+++|++|+|++|.+++ +
T Consensus       130 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-~  206 (487)
T 3oja_A          130 NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-M  206 (487)
T ss_dssp             SCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-E
T ss_pred             CCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCC-C
Confidence            445555566677889999999999999988888776 799999999999999954 43 3469999999999999996 4


Q ss_pred             chHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCC-CCCChhhhccCCCCCCCCCCCCC-------CCCC
Q 024632          136 PPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS-GPIPASLGNRSGNLPKFNASSFE-------GNKD  207 (265)
Q Consensus       136 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~-g~~p~~~~~~~~~l~~l~~~~~~-------~N~~  207 (265)
                      |..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+. +.+|..+..    ++.+..++..       .|+.
T Consensus       207 ~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~----l~~L~~l~~~~~~~~~~~~~~  281 (487)
T 3oja_A          207 GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK----NQRVQTVAKQTVKKLTGQNEE  281 (487)
T ss_dssp             CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTT----CHHHHHHHHHHHHHHTSSSSC
T ss_pred             CHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHh----CCCCcEEeccccccccCCCcc
Confidence            555999999999999999999 47888999999999999999998 566666655    5555555554       6777


Q ss_pred             CCCCC
Q 024632          208 LYGYP  212 (265)
Q Consensus       208 ~c~~~  212 (265)
                      .|.++
T Consensus       282 ~c~~~  286 (487)
T 3oja_A          282 ECTVP  286 (487)
T ss_dssp             CCSST
T ss_pred             cccCC
Confidence            77764

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=1.9e-15  Score=115.88  Aligned_cols=114  Identities=26%  Similarity=0.274  Sum_probs=99.7

Q ss_pred             CCCCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCC-CchHh
Q 024632           61 SYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGE-IPPQL  139 (265)
Q Consensus        61 ~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~  139 (265)
                      +..|+.++.++++++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++. .+..+
T Consensus        32 ~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~  109 (149)
T 2je0_A           32 GKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPL  109 (149)
T ss_dssp             TBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGG
T ss_pred             hHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHH
Confidence            35677778899999999999999965  7789999999999999999977888788899999999999999953 34789


Q ss_pred             hhCCcCCEEEccCccCcccCC---hhccCCCCCCEEEccc
Q 024632          140 TLCAYLNVIDLHDNLLTGQIP---QQLGLLVRLSAFDVSN  176 (265)
Q Consensus       140 ~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~l~~  176 (265)
                      ..+++|++|++++|.+++..+   ..+..+++|+.|++++
T Consensus       110 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          110 KKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             GGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             hhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            999999999999999996655   4789999999999864

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.56  E-value=1.9e-14  Score=125.03  Aligned_cols=126  Identities=27%  Similarity=0.434  Sum_probs=58.6

Q ss_pred             cCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEE
Q 024632           69 NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVI  148 (265)
Q Consensus        69 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  148 (265)
                      .+++|++|++++|.+++ ++. +..+++|++|++++|.+++ + +.+..+++|++|++++|.+++ + +.+..+++|+.|
T Consensus       219 ~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L  292 (347)
T 4fmz_A          219 NMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSL  292 (347)
T ss_dssp             GCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEE
T ss_pred             cCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEE
Confidence            34444455555554442 222 4444555555555555442 2 234444555555555555542 2 234445555555


Q ss_pred             EccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCC
Q 024632          149 DLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK  206 (265)
Q Consensus       149 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~  206 (265)
                      ++++|.+++..|..+..+++|+.|++++|++++..|  +..    ++.++.+++++|+
T Consensus       293 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~----l~~L~~L~l~~N~  344 (347)
T 4fmz_A          293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LAS----LSKMDSADFANQV  344 (347)
T ss_dssp             ECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGG----CTTCSEESSSCC-
T ss_pred             ECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhh----hhccceeehhhhc
Confidence            555555554444445555555555555555543333  222    4444555555543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.56  E-value=1.6e-14  Score=123.13  Aligned_cols=105  Identities=28%  Similarity=0.325  Sum_probs=48.4

Q ss_pred             ecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCE
Q 024632           68 CNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNV  147 (265)
Q Consensus        68 ~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  147 (265)
                      ..+++|++|++++|.+++. +. +..+++|++|++++|.+++ +| .+..+++|++|++++|.+++ + +.+..+++|++
T Consensus        65 ~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~  138 (291)
T 1h6t_A           65 QYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLES  138 (291)
T ss_dssp             GGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCE
T ss_pred             hcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCE
Confidence            3445555555555555532 22 4455555555555555542 22 24444555555555555442 2 23444444444


Q ss_pred             EEccCccCcccCChhccCCCCCCEEEcccCCCC
Q 024632          148 IDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS  180 (265)
Q Consensus       148 L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~  180 (265)
                      |++++|++++.  ..+..+++|+.|++++|.++
T Consensus       139 L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~  169 (291)
T 1h6t_A          139 LYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS  169 (291)
T ss_dssp             EECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred             EEccCCcCCcc--hhhccCCCCCEEEccCCccc
Confidence            44444444422  23444444444444444444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.56  E-value=1.3e-14  Score=123.68  Aligned_cols=127  Identities=25%  Similarity=0.340  Sum_probs=110.0

Q ss_pred             eecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCC
Q 024632           67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLN  146 (265)
Q Consensus        67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  146 (265)
                      +..+++|++|++++|.+++ ++ .+..+++|++|++++|.+++ + +.+..+++|+.|++++|.+++.  ..+..+++|+
T Consensus        86 l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~  159 (291)
T 1h6t_A           86 LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLD  159 (291)
T ss_dssp             GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred             cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCC
Confidence            6778999999999999985 44 48999999999999999995 4 4688999999999999999954  6789999999


Q ss_pred             EEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCC
Q 024632          147 VIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD  207 (265)
Q Consensus       147 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~  207 (265)
                      +|++++|++++..|  +..+++|+.|++++|.+++ +|. +..    ++.|+.+++++|+.
T Consensus       160 ~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~~-l~~----l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          160 TLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRA-LAG----LKNLDVLELFSQEC  212 (291)
T ss_dssp             EEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGG-GTT----CTTCSEEEEEEEEE
T ss_pred             EEEccCCccccchh--hcCCCccCEEECCCCcCCC-Chh-hcc----CCCCCEEECcCCcc
Confidence            99999999996544  8999999999999999985 453 544    88899999999874

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.55  E-value=9.3e-15  Score=122.86  Aligned_cols=129  Identities=25%  Similarity=0.350  Sum_probs=105.9

Q ss_pred             eeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcC
Q 024632           66 ATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYL  145 (265)
Q Consensus        66 ~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  145 (265)
                      .+..+++|++|++++|.+++ ++. +..+++|++|++++|++++ +|... . ++|++|++++|.+++ ++ .+..+++|
T Consensus        58 ~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~-l~~~~-~-~~L~~L~L~~N~l~~-~~-~l~~l~~L  130 (263)
T 1xeu_A           58 GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKN-LNGIP-S-ACLSRLFLDNNELRD-TD-SLIHLKNL  130 (263)
T ss_dssp             TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSC-CTTCC-C-SSCCEEECCSSCCSB-SG-GGTTCTTC
T ss_pred             HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCC-cCccc-c-CcccEEEccCCccCC-Ch-hhcCcccc
Confidence            45678999999999999985 444 8899999999999999984 55433 3 899999999999985 44 58899999


Q ss_pred             CEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCC
Q 024632          146 NVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLY  209 (265)
Q Consensus       146 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c  209 (265)
                      ++|++++|++++ +| .+..+++|+.|++++|++++.  ..+..    ++.++.+++++|+..+
T Consensus       131 ~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~----l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          131 EILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTR----LKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             CEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTT----CCCCCEEEEEEEEEEC
T ss_pred             cEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhcc----CCCCCEEeCCCCcccC
Confidence            999999999995 45 688899999999999999865  44444    7888888899887544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.55  E-value=9.1e-15  Score=135.44  Aligned_cols=127  Identities=24%  Similarity=0.205  Sum_probs=109.0

Q ss_pred             CCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEc
Q 024632           71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL  150 (265)
Q Consensus        71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  150 (265)
                      +++++|++++|.+++..|..+.++++|++|++++|.+++..|..|..+++|++|++++|.++ .+|..  .+++|++|++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L  128 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL  128 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence            78999999999999777788999999999999999999777888999999999999999998 67766  7999999999


Q ss_pred             cCccCcc-cCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCC--CCCCCCCCCC
Q 024632          151 HDNLLTG-QIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKF--NASSFEGNKD  207 (265)
Q Consensus       151 s~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l--~~~~~~~N~~  207 (265)
                      ++|++++ .+|..++.+++|++|++++|.+++.   .+..    ++.+  +.+++++|..
T Consensus       129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~----l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLP----VAHLHLSCILLDLVSY  181 (562)
T ss_dssp             CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGG----GTTSCEEEEEEEESSC
T ss_pred             CCCCccccCchHhhcccCcccEEecCCCccccC---chhh----hhhceeeEEEeecccc
Confidence            9999986 4568899999999999999999853   3333    3334  7888888865

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.55  E-value=4.2e-14  Score=121.48  Aligned_cols=126  Identities=25%  Similarity=0.407  Sum_probs=66.1

Q ss_pred             eecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCC
Q 024632           67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLN  146 (265)
Q Consensus        67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  146 (265)
                      +..+++|++|++++|.+++ ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++. +. +..+++|+
T Consensus        81 ~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~  154 (308)
T 1h6u_A           81 LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQ  154 (308)
T ss_dssp             GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCC
T ss_pred             HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcC-cc-ccCCCCcc
Confidence            3445555555555555553 22 35555555666666555553 332 55555666666666655532 22 55555666


Q ss_pred             EEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCC
Q 024632          147 VIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK  206 (265)
Q Consensus       147 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~  206 (265)
                      +|++++|++++ ++. +..+++|+.|++++|.+++. |. +..    ++.++.+++++|.
T Consensus       155 ~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~----l~~L~~L~L~~N~  206 (308)
T 1h6u_A          155 YLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDI-SP-LAS----LPNLIEVHLKNNQ  206 (308)
T ss_dssp             EEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC-GG-GGG----CTTCCEEECTTSC
T ss_pred             EEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcC-hh-hcC----CCCCCEEEccCCc
Confidence            66666666553 332 55556666666666665532 22 332    4455555555554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.54  E-value=7.7e-16  Score=132.75  Aligned_cols=133  Identities=22%  Similarity=0.138  Sum_probs=104.8

Q ss_pred             CCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCc-ccCcccceeccccccCCCCCchHhhhCCcCCEE
Q 024632           70 NGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADL-QYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVI  148 (265)
Q Consensus        70 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  148 (265)
                      +++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++. |. ...+++|++|
T Consensus       119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L  196 (317)
T 3o53_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTL  196 (317)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEE
T ss_pred             cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEE
Confidence            5778899999998887667778888889999999998886656655 3678899999999988743 33 3347888999


Q ss_pred             EccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCCC
Q 024632          149 DLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYG  210 (265)
Q Consensus       149 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~  210 (265)
                      ++++|++++ +|..+..+++|+.|++++|+++ .+|..+..    ++.++.+++++|+..|+
T Consensus       197 ~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~----l~~L~~L~l~~N~~~~~  252 (317)
T 3o53_A          197 DLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRF----SQNLEHFDLRGNGFHCG  252 (317)
T ss_dssp             ECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCC----CTTCCEEECTTCCCBHH
T ss_pred             ECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhc----CCCCCEEEccCCCccCc
Confidence            999998884 5555888888999999999888 56776655    77888888888888764

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.53  E-value=3.7e-14  Score=121.82  Aligned_cols=127  Identities=25%  Similarity=0.387  Sum_probs=108.2

Q ss_pred             eecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCC
Q 024632           67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLN  146 (265)
Q Consensus        67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  146 (265)
                      +..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ ++ .+..+++|++|++++|.+++ ++. +..+++|+
T Consensus        59 ~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~  132 (308)
T 1h6u_A           59 VQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQ  132 (308)
T ss_dssp             GGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCC
T ss_pred             hhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCC
Confidence            5678999999999999985 444 8999999999999999984 44 68899999999999999985 454 88999999


Q ss_pred             EEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCC
Q 024632          147 VIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD  207 (265)
Q Consensus       147 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~  207 (265)
                      +|++++|.+++. +. +..+++|+.|++++|.+++ ++. +..    ++.|+.+++++|..
T Consensus       133 ~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~----l~~L~~L~l~~n~l  185 (308)
T 1h6u_A          133 VLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSD-LTP-LAN----LSKLTTLKADDNKI  185 (308)
T ss_dssp             EEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCC-CGG-GTT----CTTCCEEECCSSCC
T ss_pred             EEECCCCccCcC-cc-ccCCCCccEEEccCCcCCC-Chh-hcC----CCCCCEEECCCCcc
Confidence            999999999954 44 8899999999999999985 444 544    88899999999864

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.51  E-value=6.8e-14  Score=130.74  Aligned_cols=126  Identities=25%  Similarity=0.347  Sum_probs=69.7

Q ss_pred             eecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCC
Q 024632           67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLN  146 (265)
Q Consensus        67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  146 (265)
                      ++.+++|+.|+|++|.+.+ +| .+..+++|+.|+|++|.+.+ + +.+..+++|+.|+|++|.+++.  ..+..+++|+
T Consensus        83 l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~  156 (605)
T 1m9s_A           83 LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLD  156 (605)
T ss_dssp             GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCS
T ss_pred             hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCC
Confidence            3344555555555555542 22 35555555555555555552 2 2355555666666666666532  3455666666


Q ss_pred             EEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCC
Q 024632          147 VIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK  206 (265)
Q Consensus       147 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~  206 (265)
                      .|+|++|.+++..|  +..+++|+.|++++|++++ +| .+..    ++.|+.+++++|+
T Consensus       157 ~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~----l~~L~~L~L~~N~  208 (605)
T 1m9s_A          157 TLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAG----LKNLDVLELFSQE  208 (605)
T ss_dssp             EEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTT----CTTCSEEECCSEE
T ss_pred             EEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHcc----CCCCCEEEccCCc
Confidence            66666666664433  5666666666666666654 22 2333    6667777777765

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.51  E-value=6.9e-14  Score=130.71  Aligned_cols=128  Identities=26%  Similarity=0.299  Sum_probs=109.2

Q ss_pred             eeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcC
Q 024632           66 ATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYL  145 (265)
Q Consensus        66 ~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  145 (265)
                      .+..+++|+.|+|++|.+.+..|  +..+++|+.|+|++|.+++ +| .+..+++|+.|+|++|.+++ + +.+..+++|
T Consensus        60 ~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L  133 (605)
T 1m9s_A           60 GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQL  133 (605)
T ss_dssp             TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTC
T ss_pred             HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCcc
Confidence            35678999999999999985443  8899999999999999984 44 68899999999999999985 4 458899999


Q ss_pred             CEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCC
Q 024632          146 NVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD  207 (265)
Q Consensus       146 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~  207 (265)
                      +.|+|++|.+++.  ..+..+++|+.|++++|.+++..|  +..    ++.|+.+++++|..
T Consensus       134 ~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~----l~~L~~L~Ls~N~i  187 (605)
T 1m9s_A          134 ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAG----LTKLQNLYLSKNHI  187 (605)
T ss_dssp             SEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTT----CTTCCEEECCSSCC
T ss_pred             CEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hcc----CCCCCEEECcCCCC
Confidence            9999999999954  568899999999999999997655  555    78888999998864

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.51  E-value=5.2e-14  Score=118.25  Aligned_cols=128  Identities=28%  Similarity=0.331  Sum_probs=108.0

Q ss_pred             eecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCC
Q 024632           67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLN  146 (265)
Q Consensus        67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  146 (265)
                      +..+++|++|++++|.++ .++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ +|.. .. ++|+
T Consensus        37 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~  109 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLS  109 (263)
T ss_dssp             HHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCC
T ss_pred             hhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCC-cCcc-cc-Cccc
Confidence            456789999999999998 566 68899999999999999995 554 8999999999999999995 4543 33 8999


Q ss_pred             EEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCC
Q 024632          147 VIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLY  209 (265)
Q Consensus       147 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c  209 (265)
                      +|++++|++++ +| .+..+++|+.|++++|++++ +| .+..    ++.|+.+++++|....
T Consensus       110 ~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~----l~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A          110 RLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGF----LSKLEVLDLHGNEITN  164 (263)
T ss_dssp             EEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGG----CTTCCEEECTTSCCCB
T ss_pred             EEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHcc----CCCCCEEECCCCcCcc
Confidence            99999999995 44 58999999999999999985 44 4555    8889999999997543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.50  E-value=2e-16  Score=127.27  Aligned_cols=128  Identities=22%  Similarity=0.235  Sum_probs=108.8

Q ss_pred             ceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCc
Q 024632           65 GATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAY  144 (265)
Q Consensus        65 ~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  144 (265)
                      ..++.+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++ +| .+..+++
T Consensus        42 ~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~  116 (198)
T 1ds9_A           42 ATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN  116 (198)
T ss_dssp             HHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred             HHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence            377789999999999999995 77 8899999999999999999 788878888999999999999995 55 6889999


Q ss_pred             CCEEEccCccCcccCC-hhccCCCCCCEEEcccCCCCCCCChh----------hhccCCCCCCCCCCC
Q 024632          145 LNVIDLHDNLLTGQIP-QQLGLLVRLSAFDVSNNKLSGPIPAS----------LGNRSGNLPKFNASS  201 (265)
Q Consensus       145 L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~g~~p~~----------~~~~~~~l~~l~~~~  201 (265)
                      |++|++++|++++..+ ..+..+++|++|++++|++++.+|..          +..    ++.++.++
T Consensus       117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~----l~~L~~Ld  180 (198)
T 1ds9_A          117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR----LPNLKKLD  180 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHH----CSSCSEEC
T ss_pred             CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHh----CCCcEEEC
Confidence            9999999999994322 47889999999999999998776642          444    66776654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.48  E-value=7e-14  Score=121.69  Aligned_cols=104  Identities=24%  Similarity=0.201  Sum_probs=89.7

Q ss_pred             EEeeCC-CccccCCccCcCCCCCCEEECcC-CCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCc
Q 024632           76 LSLTNL-SLQGSISPYLSNCTNLQSLDLSS-NALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDN  153 (265)
Q Consensus        76 L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  153 (265)
                      ++.+++ +++ .+|. +..+++|++|+|++ |.+++..+..|..+++|+.|+|++|+|++..|..|.++++|+.|+|++|
T Consensus        13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            467777 788 5888 99999999999996 9999666678999999999999999999888889999999999999999


Q ss_pred             cCcccCChhccCCCCCCEEEcccCCCCCC
Q 024632          154 LLTGQIPQQLGLLVRLSAFDVSNNKLSGP  182 (265)
Q Consensus       154 ~l~~~~p~~~~~l~~L~~L~l~~N~l~g~  182 (265)
                      +|++..+..+..++ |+.|++.+|++...
T Consensus        91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           91 ALESLSWKTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             CCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred             ccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence            99965555555555 99999999999754

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.48  E-value=6.3e-14  Score=121.98  Aligned_cols=108  Identities=20%  Similarity=0.154  Sum_probs=93.8

Q ss_pred             CEEECcCC-CCCCCCCCCcccCcccceecccc-ccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcc
Q 024632           98 QSLDLSSN-ALTGSIPADLQYLVNLAVLNLSA-NRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVS  175 (265)
Q Consensus        98 ~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~  175 (265)
                      ..++.+++ .++ .+|. +..+++|+.|+|++ |.+++..+..|.++++|+.|+|++|+|++..|..|..+++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            35688888 898 6888 99999999999996 99998777889999999999999999999889999999999999999


Q ss_pred             cCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCCCCC
Q 024632          176 NNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYP  212 (265)
Q Consensus       176 ~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~~~  212 (265)
                      +|+|++..|..+..    ++ |+.+++.+|++.|.|.
T Consensus        89 ~N~l~~~~~~~~~~----~~-L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           89 FNALESLSWKTVQG----LS-LQELVLSGNPLHCSCA  120 (347)
T ss_dssp             SSCCSCCCSTTTCS----CC-CCEEECCSSCCCCCGG
T ss_pred             CCccceeCHHHccc----CC-ceEEEeeCCCccCCCc
Confidence            99999554444443    33 8889999999999764

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.48  E-value=1.2e-13  Score=125.14  Aligned_cols=124  Identities=23%  Similarity=0.325  Sum_probs=65.5

Q ss_pred             CCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEE
Q 024632           70 NGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVID  149 (265)
Q Consensus        70 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  149 (265)
                      +++|++|++++|.+++. +. +..+++|+.|++++|.+++..+  +..+++|+.|++++|.+++..|  +..+++|+.|+
T Consensus       264 l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~  337 (466)
T 1o6v_A          264 LTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLF  337 (466)
T ss_dssp             CTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEE
T ss_pred             CCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeE
Confidence            34444444444444422 21 4444555555555555543221  4455555555555555554333  45555666666


Q ss_pred             ccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCC
Q 024632          150 LHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD  207 (265)
Q Consensus       150 Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~  207 (265)
                      +++|.+++.  ..+..+++|+.|++++|++++..|  +..    ++.++.+++++|++
T Consensus       338 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~----l~~L~~L~l~~n~~  387 (466)
T 1o6v_A          338 FYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LAN----LTRITQLGLNDQAW  387 (466)
T ss_dssp             CCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTT----CTTCCEEECCCEEE
T ss_pred             CCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhc----CCCCCEEeccCCcc
Confidence            666666533  245666666666666666665554  333    56666666666654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.47  E-value=1.8e-13  Score=126.85  Aligned_cols=96  Identities=31%  Similarity=0.410  Sum_probs=48.5

Q ss_pred             cCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEE
Q 024632           69 NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVI  148 (265)
Q Consensus        69 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  148 (265)
                      .+++|++|++++|.+++ +|. +..  +|++|++++|.+++ +|.   .+++|++|++++|.+++ +|.   .+++|++|
T Consensus        98 ~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L  165 (571)
T 3cvr_A           98 LPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVL  165 (571)
T ss_dssp             CCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEE
T ss_pred             ccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEE
Confidence            35667777777777764 555 443  56666666666653 444   34555555555555553 333   23444444


Q ss_pred             EccCccCcccCChhccCCCCCCEEEcccCCCC
Q 024632          149 DLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS  180 (265)
Q Consensus       149 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~  180 (265)
                      ++++|++++ +|. +.  ++|+.|++++|.++
T Consensus       166 ~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~  193 (571)
T 3cvr_A          166 SVRNNQLTF-LPE-LP--ESLEALDVSTNLLE  193 (571)
T ss_dssp             ECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred             ECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence            444444442 333 22  34444444444443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.47  E-value=7.4e-14  Score=110.06  Aligned_cols=113  Identities=17%  Similarity=0.167  Sum_probs=96.2

Q ss_pred             CCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCC-cccCcccceeccccccCCCCCch--Hh
Q 024632           63 LPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPAD-LQYLVNLAVLNLSANRLAGEIPP--QL  139 (265)
Q Consensus        63 ~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~--~~  139 (265)
                      .++.....++|++|++++|.+++.  ..+..+++|++|++++|.+++ +|.. +..+++|++|++++|.++ .+|.  .+
T Consensus        34 i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l  109 (176)
T 1a9n_A           34 IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR-IGEGLDQALPDLTELILTNNSLV-ELGDLDPL  109 (176)
T ss_dssp             CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCE-ECSCHHHHCTTCCEEECCSCCCC-CGGGGGGG
T ss_pred             hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccc-cCcchhhcCCCCCEEECCCCcCC-cchhhHhh
Confidence            344332344999999999999964  678999999999999999994 5544 489999999999999997 6776  78


Q ss_pred             hhCCcCCEEEccCccCcccCChh----ccCCCCCCEEEcccCCCC
Q 024632          140 TLCAYLNVIDLHDNLLTGQIPQQ----LGLLVRLSAFDVSNNKLS  180 (265)
Q Consensus       140 ~~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~l~~N~l~  180 (265)
                      ..+++|++|++++|.++ .+|..    +..+++|+.||++.|...
T Consensus       110 ~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          110 ASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             GGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             hcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            99999999999999998 66764    889999999999999875

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.46  E-value=2.3e-13  Score=118.20  Aligned_cols=128  Identities=20%  Similarity=0.285  Sum_probs=85.2

Q ss_pred             CCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEE
Q 024632           70 NGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVID  149 (265)
Q Consensus        70 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  149 (265)
                      ++++++|++++|.+.+.. . +..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ + +.+..+++|++|+
T Consensus       198 l~~L~~L~l~~n~l~~~~-~-~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~  271 (347)
T 4fmz_A          198 LTSLHYFTAYVNQITDIT-P-VANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLN  271 (347)
T ss_dssp             CTTCCEEECCSSCCCCCG-G-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEE
T ss_pred             CCccceeecccCCCCCCc-h-hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEE
Confidence            344444444444444221 1 5566677777777777763 333 6677777777777777764 3 3567777788888


Q ss_pred             ccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCC
Q 024632          150 LHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLY  209 (265)
Q Consensus       150 Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c  209 (265)
                      +++|.+++ +| .+..+++|+.|++++|++++..|..+.+    ++.++.+++++|+...
T Consensus       272 l~~n~l~~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~----l~~L~~L~L~~n~l~~  325 (347)
T 4fmz_A          272 VGSNQISD-IS-VLNNLSQLNSLFLNNNQLGNEDMEVIGG----LTNLTTLFLSQNHITD  325 (347)
T ss_dssp             CCSSCCCC-CG-GGGGCTTCSEEECCSSCCCGGGHHHHHT----CTTCSEEECCSSSCCC
T ss_pred             ccCCccCC-Ch-hhcCCCCCCEEECcCCcCCCcChhHhhc----cccCCEEEccCCcccc
Confidence            88887774 33 4677778888888888887777777766    7778888888887543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.45  E-value=3.2e-13  Score=122.30  Aligned_cols=125  Identities=29%  Similarity=0.316  Sum_probs=69.2

Q ss_pred             cCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEE
Q 024632           69 NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVI  148 (265)
Q Consensus        69 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  148 (265)
                      .+++|++|++++|.+++..+  +..+++|++|++++|.+++ ++. +..+++|+.|++++|.+++..+  +..+++|+.|
T Consensus       241 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L  314 (466)
T 1o6v_A          241 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYL  314 (466)
T ss_dssp             GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEE
T ss_pred             cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCc-ccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEE
Confidence            34455555555555553222  4555555555555555553 222 5555666666666666653322  5556666666


Q ss_pred             EccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCC
Q 024632          149 DLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD  207 (265)
Q Consensus       149 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~  207 (265)
                      ++++|++++..|  +..+++|+.|++++|++++.  ..+.+    ++.++.+++++|..
T Consensus       315 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~----l~~L~~L~l~~n~l  365 (466)
T 1o6v_A          315 TLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLAN----LTNINWLSAGHNQI  365 (466)
T ss_dssp             ECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTT----CTTCCEEECCSSCC
T ss_pred             ECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhcc----CCCCCEEeCCCCcc
Confidence            666666664433  45566666666666666643  23333    66667777777764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.45  E-value=4.6e-16  Score=125.18  Aligned_cols=130  Identities=25%  Similarity=0.295  Sum_probs=106.9

Q ss_pred             CCeEEEEeeCCCccccCCc------cCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCc
Q 024632           71 GRIYKLSLTNLSLQGSISP------YLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAY  144 (265)
Q Consensus        71 ~~l~~L~L~~n~l~~~~p~------~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  144 (265)
                      ..++.++++.+.+.|..|.      .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++
T Consensus        18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~   94 (198)
T 1ds9_A           18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT   94 (198)
T ss_dssp             TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred             ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence            4455555555666655554      88999999999999999995 77 8899999999999999999 78888888899


Q ss_pred             CCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCC-hhhhccCCCCCCCCCCCCCCCCCCC
Q 024632          145 LNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIP-ASLGNRSGNLPKFNASSFEGNKDLY  209 (265)
Q Consensus       145 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p-~~~~~~~~~l~~l~~~~~~~N~~~c  209 (265)
                      |++|++++|++++ +| .+..+++|+.|++++|++++..+ ..+..    ++.++.+++++|+..+
T Consensus        95 L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~----l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A           95 LEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAA----LDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             CSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTT----TTTCSEEEECSCHHHH
T ss_pred             CCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhc----CCCCCEEEecCCcccc
Confidence            9999999999995 55 58889999999999999984322 35555    8889999999997533

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.44  E-value=3.4e-13  Score=125.19  Aligned_cols=103  Identities=29%  Similarity=0.424  Sum_probs=95.4

Q ss_pred             CCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcc
Q 024632           96 NLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVS  175 (265)
Q Consensus        96 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~  175 (265)
                      .|+.|++++|.++ .+|. +..+++|+.|+|++|.++ .+|..++.+++|+.|+|++|++++ +| .++.+++|+.|+++
T Consensus       442 ~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCC-CCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence            5789999999999 4776 999999999999999999 889999999999999999999995 78 79999999999999


Q ss_pred             cCCCCCCC-ChhhhccCCCCCCCCCCCCCCCCC
Q 024632          176 NNKLSGPI-PASLGNRSGNLPKFNASSFEGNKD  207 (265)
Q Consensus       176 ~N~l~g~~-p~~~~~~~~~l~~l~~~~~~~N~~  207 (265)
                      +|++++.. |..+..    ++.|+.+++++|+.
T Consensus       517 ~N~l~~~~~p~~l~~----l~~L~~L~L~~N~l  545 (567)
T 1dce_A          517 NNRLQQSAAIQPLVS----CPRLVLLNLQGNSL  545 (567)
T ss_dssp             SSCCCSSSTTGGGGG----CTTCCEEECTTSGG
T ss_pred             CCCCCCCCCcHHHhc----CCCCCEEEecCCcC
Confidence            99999876 999888    88999999999984

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.43  E-value=5.4e-15  Score=127.91  Aligned_cols=133  Identities=20%  Similarity=0.198  Sum_probs=66.2

Q ss_pred             CCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCC-CCCCC-CCCCcccCcccceeccccc-cCCCC-CchHhhhCC-c
Q 024632           70 NGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSN-ALTGS-IPADLQYLVNLAVLNLSAN-RLAGE-IPPQLTLCA-Y  144 (265)
Q Consensus        70 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~-~p~~l~~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~-~  144 (265)
                      +++|++|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +
T Consensus       117 ~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~  196 (336)
T 2ast_B          117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET  196 (336)
T ss_dssp             BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred             CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence            344444444444444333444444444455555444 33321 2333444455555555555 44422 344445555 5


Q ss_pred             CCEEEccCc--cCc-ccCChhccCCCCCCEEEcccCC-CCCCCChhhhccCCCCCCCCCCCCCCCC
Q 024632          145 LNVIDLHDN--LLT-GQIPQQLGLLVRLSAFDVSNNK-LSGPIPASLGNRSGNLPKFNASSFEGNK  206 (265)
Q Consensus       145 L~~L~Ls~N--~l~-~~~p~~~~~l~~L~~L~l~~N~-l~g~~p~~~~~~~~~l~~l~~~~~~~N~  206 (265)
                      |++|++++|  .++ +.+|..+..+++|+.|++++|. +++..+..+.+    ++.|+.+++++|.
T Consensus       197 L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~----l~~L~~L~l~~~~  258 (336)
T 2ast_B          197 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ----LNYLQHLSLSRCY  258 (336)
T ss_dssp             CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG----CTTCCEEECTTCT
T ss_pred             CCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhC----CCCCCEeeCCCCC
Confidence            555555555  333 2344445556666666666666 55455555544    5666666666664

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.43  E-value=6.5e-15  Score=127.39  Aligned_cols=136  Identities=21%  Similarity=0.295  Sum_probs=114.6

Q ss_pred             ecCCCeEEEEeeCCCcccc-CCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccc-cCCC-CCchHhhhCCc
Q 024632           68 CNNGRIYKLSLTNLSLQGS-ISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSAN-RLAG-EIPPQLTLCAY  144 (265)
Q Consensus        68 ~~~~~l~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~-~~p~~~~~l~~  144 (265)
                      ..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|++++| .+++ .++..+..+++
T Consensus        90 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~  169 (336)
T 2ast_B           90 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR  169 (336)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred             ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCC
Confidence            3578999999999998865 7778889999999999999998777888888999999999999 6775 26677889999


Q ss_pred             CCEEEccCc-cCccc-CChhccCCC-CCCEEEcccC--CCC-CCCChhhhccCCCCCCCCCCCCCCCCC
Q 024632          145 LNVIDLHDN-LLTGQ-IPQQLGLLV-RLSAFDVSNN--KLS-GPIPASLGNRSGNLPKFNASSFEGNKD  207 (265)
Q Consensus       145 L~~L~Ls~N-~l~~~-~p~~~~~l~-~L~~L~l~~N--~l~-g~~p~~~~~~~~~l~~l~~~~~~~N~~  207 (265)
                      |++|++++| .+++. ++..+..++ +|+.|++++|  .++ +.+|..+.+    +++|+.+++++|..
T Consensus       170 L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~----~~~L~~L~l~~~~~  234 (336)
T 2ast_B          170 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR----CPNLVHLDLSDSVM  234 (336)
T ss_dssp             CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH----CTTCSEEECTTCTT
T ss_pred             CCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh----CCCCCEEeCCCCCc
Confidence            999999999 88864 677788899 9999999999  565 456666666    78888999998874

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.42  E-value=1e-12  Score=118.89  Aligned_cols=122  Identities=25%  Similarity=0.252  Sum_probs=77.9

Q ss_pred             eecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCC
Q 024632           67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLN  146 (265)
Q Consensus        67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  146 (265)
                      +..+++|++|++++|.+++ +|  ++.+++|++|++++|.+++ +|  +..+++|++|++++|.+++ +|  ++.+++|+
T Consensus        60 l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~  130 (457)
T 3bz5_A           60 IEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLT  130 (457)
T ss_dssp             GGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCC
T ss_pred             hcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCC
Confidence            4556667777777777664 33  6666777777777777664 33  5666777777777777764 33  66666777


Q ss_pred             EEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCC
Q 024632          147 VIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK  206 (265)
Q Consensus       147 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~  206 (265)
                      +|++++|++++ ++  ++.+++|+.|++++|+..+.++  +..    ++.++.+++++|.
T Consensus       131 ~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~--~~~----l~~L~~L~ls~n~  181 (457)
T 3bz5_A          131 YLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKLD--VTP----QTQLTTLDCSFNK  181 (457)
T ss_dssp             EEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCC--CTT----CTTCCEEECCSSC
T ss_pred             EEECCCCccce-ec--cccCCcCCEEECCCCCcccccc--ccc----CCcCCEEECCCCc
Confidence            77777777764 33  5666677777777775544442  222    6667777777775

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.41  E-value=1.9e-14  Score=126.30  Aligned_cols=140  Identities=21%  Similarity=0.231  Sum_probs=89.5

Q ss_pred             eecCC-CeEEEEeeCCCccccCCccCcCC-----CCCCEEECcCCCCCCCCCCCccc----C-cccceeccccccCCCCC
Q 024632           67 TCNNG-RIYKLSLTNLSLQGSISPYLSNC-----TNLQSLDLSSNALTGSIPADLQY----L-VNLAVLNLSANRLAGEI  135 (265)
Q Consensus        67 ~~~~~-~l~~L~L~~n~l~~~~p~~l~~l-----~~L~~L~Ls~N~l~~~~p~~l~~----l-~~L~~L~Ls~N~l~~~~  135 (265)
                      +..++ +|++|+|++|.+++..+..+..+     ++|++|++++|.+++..+..+..    + ++|++|++++|.+++..
T Consensus        46 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  125 (362)
T 3goz_A           46 FANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS  125 (362)
T ss_dssp             HHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred             HHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH
Confidence            34455 67777777777775555555543     77777777777777554443332    3 67777777777777655


Q ss_pred             chHhhh-----CCcCCEEEccCccCcccC----ChhccCCC-CCCEEEcccCCCCCCCChhhhccCCCC-CCCCCCCCCC
Q 024632          136 PPQLTL-----CAYLNVIDLHDNLLTGQI----PQQLGLLV-RLSAFDVSNNKLSGPIPASLGNRSGNL-PKFNASSFEG  204 (265)
Q Consensus       136 p~~~~~-----l~~L~~L~Ls~N~l~~~~----p~~~~~l~-~L~~L~l~~N~l~g~~p~~~~~~~~~l-~~l~~~~~~~  204 (265)
                      +..+..     .++|++|++++|.+++.-    +..+..++ +|+.|++++|++++..+..+....... +.++.+++++
T Consensus       126 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~  205 (362)
T 3goz_A          126 SSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSA  205 (362)
T ss_dssp             HHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred             HHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCC
Confidence            554433     247788888888777433    33344454 788888888887766665555432334 3677778887


Q ss_pred             CC
Q 024632          205 NK  206 (265)
Q Consensus       205 N~  206 (265)
                      |.
T Consensus       206 N~  207 (362)
T 3goz_A          206 NL  207 (362)
T ss_dssp             SC
T ss_pred             CC
Confidence            76

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.38  E-value=4.1e-12  Score=114.94  Aligned_cols=85  Identities=29%  Similarity=0.278  Sum_probs=49.5

Q ss_pred             CcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCC
Q 024632           91 LSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLS  170 (265)
Q Consensus        91 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  170 (265)
                      +..+++|++|++++|++++ +|  +..+++|+.|++++|.+++.   .+..+++|++|++++|++++ +|  ++.+++|+
T Consensus       166 ~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~  236 (457)
T 3bz5_A          166 VTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLT  236 (457)
T ss_dssp             CTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCS
T ss_pred             cccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCC
Confidence            3444555555555555553 33  44555566666666665532   25556666666666666664 45  56666777


Q ss_pred             EEEcccCCCCCCCC
Q 024632          171 AFDVSNNKLSGPIP  184 (265)
Q Consensus       171 ~L~l~~N~l~g~~p  184 (265)
                      .|++++|++++..+
T Consensus       237 ~L~l~~N~l~~~~~  250 (457)
T 3bz5_A          237 YFDCSVNPLTELDV  250 (457)
T ss_dssp             EEECCSSCCSCCCC
T ss_pred             EEEeeCCcCCCcCH
Confidence            77777777765443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.37  E-value=8.7e-13  Score=122.29  Aligned_cols=115  Identities=25%  Similarity=0.359  Sum_probs=74.2

Q ss_pred             CeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEcc
Q 024632           72 RIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLH  151 (265)
Q Consensus        72 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  151 (265)
                      +|++|++++|.+++ +|.   .+++|+.|++++|.+++ +|.   .+++|++|++++|.+++ +|. +.  ++|+.|+++
T Consensus       121 ~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls  188 (571)
T 3cvr_A          121 SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVS  188 (571)
T ss_dssp             TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECC
T ss_pred             CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECc
Confidence            78888888888875 555   56777777777777774 555   45677777777777764 555 44  667777777


Q ss_pred             CccCcccCChhccCCCCC-------CEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCC
Q 024632          152 DNLLTGQIPQQLGLLVRL-------SAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD  207 (265)
Q Consensus       152 ~N~l~~~~p~~~~~l~~L-------~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~  207 (265)
                      +|+++ .+|. +..  +|       +.|++++|+++ .+|..+..    ++.++.+++++|+.
T Consensus       189 ~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~----l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          189 TNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILS----LDPTCTIILEDNPL  242 (571)
T ss_dssp             SSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGG----SCTTEEEECCSSSC
T ss_pred             CCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhc----CCCCCEEEeeCCcC
Confidence            77666 5555 433  45       66666666666 46666555    55566666666654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.36  E-value=5.5e-14  Score=124.17  Aligned_cols=132  Identities=17%  Similarity=0.300  Sum_probs=68.4

Q ss_pred             CCeEEEEeeCCCcc-ccCC---ccCcCCCCCCEEECcCCCCCC-----CCCCCcccCcccceeccccccCC----CCCch
Q 024632           71 GRIYKLSLTNLSLQ-GSIS---PYLSNCTNLQSLDLSSNALTG-----SIPADLQYLVNLAVLNLSANRLA----GEIPP  137 (265)
Q Consensus        71 ~~l~~L~L~~n~l~-~~~p---~~l~~l~~L~~L~Ls~N~l~~-----~~p~~l~~l~~L~~L~Ls~N~l~----~~~p~  137 (265)
                      ++|++|++++|.++ +.++   ..+..+++|++|++++|.++.     ..|..+..+++|++|+|++|.++    +.+|.
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            34444555544443 2222   234445555555555555541     12224555566666666666653    34455


Q ss_pred             HhhhCCcCCEEEccCccCccc----CChhcc--CCCCCCEEEcccCCCCC----CCChhh-hccCCCCCCCCCCCCCCCC
Q 024632          138 QLTLCAYLNVIDLHDNLLTGQ----IPQQLG--LLVRLSAFDVSNNKLSG----PIPASL-GNRSGNLPKFNASSFEGNK  206 (265)
Q Consensus       138 ~~~~l~~L~~L~Ls~N~l~~~----~p~~~~--~l~~L~~L~l~~N~l~g----~~p~~~-~~~~~~l~~l~~~~~~~N~  206 (265)
                      .+..+++|++|++++|.+++.    +|..+.  .+++|+.|++++|.+++    .+|..+ .+    ++.|+.+++++|+
T Consensus       239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~----l~~L~~L~l~~N~  314 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK----MPDLLFLELNGNR  314 (386)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHH----CTTCCEEECTTSB
T ss_pred             HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhc----CCCceEEEccCCc
Confidence            555566666666666666543    344442  25666666666666654    255544 22    4555566666665

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.34  E-value=3.9e-14  Score=125.16  Aligned_cols=135  Identities=19%  Similarity=0.274  Sum_probs=77.9

Q ss_pred             ecCCCeEEEEeeCCCccc----cCCccCcCCCCCCEEECcCCCCCCCCCCCc----ccC---------cccceecccccc
Q 024632           68 CNNGRIYKLSLTNLSLQG----SISPYLSNCTNLQSLDLSSNALTGSIPADL----QYL---------VNLAVLNLSANR  130 (265)
Q Consensus        68 ~~~~~l~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l----~~l---------~~L~~L~Ls~N~  130 (265)
                      ..+++|++|+|++|.+.+    .+|..+..+++|++|+|++|.+++..+..+    ..+         ++|++|++++|.
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence            345667777777777664    355556666677777777776643222222    222         566666666666


Q ss_pred             CC-CCCc---hHhhhCCcCCEEEccCccCcc-----cCChhccCCCCCCEEEcccCCCC----CCCChhhhccCCCCCCC
Q 024632          131 LA-GEIP---PQLTLCAYLNVIDLHDNLLTG-----QIPQQLGLLVRLSAFDVSNNKLS----GPIPASLGNRSGNLPKF  197 (265)
Q Consensus       131 l~-~~~p---~~~~~l~~L~~L~Ls~N~l~~-----~~p~~~~~l~~L~~L~l~~N~l~----g~~p~~~~~~~~~l~~l  197 (265)
                      ++ +.+|   ..+..+++|++|++++|+++.     ..|..+..+++|+.|++++|.++    +.+|..+..    ++.|
T Consensus       171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~----~~~L  246 (386)
T 2ca6_A          171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS----WPNL  246 (386)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG----CTTC
T ss_pred             CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHcc----CCCc
Confidence            65 2333   345556666666666666652     23335556666666666666664    345555544    5556


Q ss_pred             CCCCCCCCC
Q 024632          198 NASSFEGNK  206 (265)
Q Consensus       198 ~~~~~~~N~  206 (265)
                      +.+++++|.
T Consensus       247 ~~L~L~~n~  255 (386)
T 2ca6_A          247 RELGLNDCL  255 (386)
T ss_dssp             CEEECTTCC
T ss_pred             CEEECCCCC
Confidence            666666654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.32  E-value=8.7e-12  Score=116.79  Aligned_cols=77  Identities=32%  Similarity=0.405  Sum_probs=50.1

Q ss_pred             cccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCC
Q 024632          119 VNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFN  198 (265)
Q Consensus       119 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~  198 (265)
                      ++|+.|++++|.+++ +|   ..+++|+.|++++|+++ .+|.   .+++|+.|++++|+++ .+|..+.+    ++.++
T Consensus       221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~----l~~L~  287 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIH----LSSET  287 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGG----SCTTC
T ss_pred             CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhh----ccccC
Confidence            445566666666653 34   23456666777777666 4554   4567777777777777 66777666    67777


Q ss_pred             CCCCCCCCCC
Q 024632          199 ASSFEGNKDL  208 (265)
Q Consensus       199 ~~~~~~N~~~  208 (265)
                      .+++++|+..
T Consensus       288 ~L~L~~N~l~  297 (622)
T 3g06_A          288 TVNLEGNPLS  297 (622)
T ss_dssp             EEECCSCCCC
T ss_pred             EEEecCCCCC
Confidence            7778777643

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.32  E-value=7.7e-12  Score=113.05  Aligned_cols=78  Identities=24%  Similarity=0.359  Sum_probs=42.0

Q ss_pred             CCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEc
Q 024632           71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL  150 (265)
Q Consensus        71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  150 (265)
                      ++|++|++++|.+++ +| .+..+++|++|++++|++++ +|..+   .+|++|++++|.+++ +| .++.+++|++|++
T Consensus       131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l  202 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA  202 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred             CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence            355566666666653 44 35666666666666666653 44322   355555555555553 33 3555555555555


Q ss_pred             cCccCc
Q 024632          151 HDNLLT  156 (265)
Q Consensus       151 s~N~l~  156 (265)
                      ++|+++
T Consensus       203 ~~N~l~  208 (454)
T 1jl5_A          203 DNNSLK  208 (454)
T ss_dssp             CSSCCS
T ss_pred             CCCcCC
Confidence            555554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.32  E-value=3.1e-13  Score=118.47  Aligned_cols=149  Identities=21%  Similarity=0.207  Sum_probs=114.6

Q ss_pred             CCCCCCceeecCCCeEEEEeeCCCccccCC----ccCcCCC-CCCEEECcCCCCCCCCCCCcccC-----cccceecccc
Q 024632           59 FTSYLPGATCNNGRIYKLSLTNLSLQGSIS----PYLSNCT-NLQSLDLSSNALTGSIPADLQYL-----VNLAVLNLSA  128 (265)
Q Consensus        59 ~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p----~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l-----~~L~~L~Ls~  128 (265)
                      +.+..|......++|++|++++|.+++..+    ..+..++ +|++|++++|.+++..+..+..+     ++|++|++++
T Consensus        10 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~   89 (362)
T 3goz_A           10 GSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSG   89 (362)
T ss_dssp             TCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCS
T ss_pred             chHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcC
Confidence            333345555556679999999999996555    6678888 89999999999997767666665     8999999999


Q ss_pred             ccCCCCCchHhhhC-----CcCCEEEccCccCcccCChhc----cC-CCCCCEEEcccCCCCCCCChhhhccCCCCC-CC
Q 024632          129 NRLAGEIPPQLTLC-----AYLNVIDLHDNLLTGQIPQQL----GL-LVRLSAFDVSNNKLSGPIPASLGNRSGNLP-KF  197 (265)
Q Consensus       129 N~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~~p~~~----~~-l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~-~l  197 (265)
                      |.+++..+..+...     ++|++|++++|++++..+..+    .. .++|+.|++++|.+++..+..+.......+ .+
T Consensus        90 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L  169 (362)
T 3goz_A           90 NFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANV  169 (362)
T ss_dssp             SCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             CcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccc
Confidence            99997777755544     899999999999997666544    33 369999999999998655554433222244 78


Q ss_pred             CCCCCCCCCC
Q 024632          198 NASSFEGNKD  207 (265)
Q Consensus       198 ~~~~~~~N~~  207 (265)
                      +.+++++|..
T Consensus       170 ~~L~Ls~n~l  179 (362)
T 3goz_A          170 NSLNLRGNNL  179 (362)
T ss_dssp             CEEECTTSCG
T ss_pred             cEeeecCCCC
Confidence            8899999864

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.26  E-value=3.1e-11  Score=109.07  Aligned_cols=109  Identities=27%  Similarity=0.357  Sum_probs=80.7

Q ss_pred             CCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhC
Q 024632           63 LPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLC  142 (265)
Q Consensus        63 ~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l  142 (265)
                      .| .+.++++|++|++++|.+++ +|..+   .+|++|++++|.+++ +| .+..+++|++|++++|.+++ +|..   .
T Consensus       146 lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~  214 (454)
T 1jl5_A          146 LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---P  214 (454)
T ss_dssp             CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---C
T ss_pred             Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---c
Confidence            45 36778899999999999884 66543   488888999888885 66 57888888888888888874 4432   2


Q ss_pred             CcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCCh
Q 024632          143 AYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPA  185 (265)
Q Consensus       143 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~  185 (265)
                      ++|++|++++|.++ .+|. ++.+++|+.|++++|++++ +|.
T Consensus       215 ~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~  254 (454)
T 1jl5_A          215 LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPD  254 (454)
T ss_dssp             TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCS
T ss_pred             CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-ccc
Confidence            46777788887777 6664 7777777777777777764 443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.22  E-value=2.7e-11  Score=113.42  Aligned_cols=87  Identities=31%  Similarity=0.364  Sum_probs=76.3

Q ss_pred             CCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEc
Q 024632           95 TNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDV  174 (265)
Q Consensus        95 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l  174 (265)
                      ++|+.|++++|.++ .+|   ..+++|+.|++++|.++ .+|.   .+++|+.|++++|+++ .+|..+..+++|+.|++
T Consensus       221 ~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L  291 (622)
T 3g06_A          221 SGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL  291 (622)
T ss_dssp             TTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred             CCCCEEEccCCccC-cCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence            67888899998888 466   45689999999999999 5666   6789999999999999 88999999999999999


Q ss_pred             ccCCCCCCCChhhhcc
Q 024632          175 SNNKLSGPIPASLGNR  190 (265)
Q Consensus       175 ~~N~l~g~~p~~~~~~  190 (265)
                      ++|++++.+|..+..+
T Consensus       292 ~~N~l~~~~~~~l~~L  307 (622)
T 3g06_A          292 EGNPLSERTLQALREI  307 (622)
T ss_dssp             CSCCCCHHHHHHHHHH
T ss_pred             cCCCCCCcCHHHHHhc
Confidence            9999999988877763

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.22  E-value=3.2e-13  Score=121.61  Aligned_cols=135  Identities=17%  Similarity=0.161  Sum_probs=67.7

Q ss_pred             ecCCCeEEEEeeCCCccccC-----CccCcCCCCCCEEECcCCCCCCC----CCCCcccCcccceeccccccC-------
Q 024632           68 CNNGRIYKLSLTNLSLQGSI-----SPYLSNCTNLQSLDLSSNALTGS----IPADLQYLVNLAVLNLSANRL-------  131 (265)
Q Consensus        68 ~~~~~l~~L~L~~n~l~~~~-----p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l-------  131 (265)
                      ..+++|++|++++|.++..-     +..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+       
T Consensus       224 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~  303 (461)
T 1z7x_W          224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL  303 (461)
T ss_dssp             HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred             HhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHH
Confidence            34566666666666654321     11122345555555555555521    333344444555555555544       


Q ss_pred             ----------------------CCC----CchHhhhCCcCCEEEccCccCcccCChhccC-----CCCCCEEEcccCCCC
Q 024632          132 ----------------------AGE----IPPQLTLCAYLNVIDLHDNLLTGQIPQQLGL-----LVRLSAFDVSNNKLS  180 (265)
Q Consensus       132 ----------------------~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~l~~N~l~  180 (265)
                                            ++.    ++..+..+++|++|++++|.+++..+..+..     .++|+.|++++|.++
T Consensus       304 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~  383 (461)
T 1z7x_W          304 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS  383 (461)
T ss_dssp             HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             HHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence                                  422    2334444556666666666555433332221     445666666666665


Q ss_pred             C----CCChhhhccCCCCCCCCCCCCCCCC
Q 024632          181 G----PIPASLGNRSGNLPKFNASSFEGNK  206 (265)
Q Consensus       181 g----~~p~~~~~~~~~l~~l~~~~~~~N~  206 (265)
                      +    .+|..+..    ++.++.+++++|+
T Consensus       384 ~~~~~~l~~~l~~----~~~L~~L~l~~N~  409 (461)
T 1z7x_W          384 DSSCSSLAATLLA----NHSLRELDLSNNC  409 (461)
T ss_dssp             HHHHHHHHHHHHH----CCCCCEEECCSSS
T ss_pred             hhhHHHHHHHHHh----CCCccEEECCCCC
Confidence            4    45555544    5556666666665

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.19  E-value=2.1e-11  Score=106.32  Aligned_cols=69  Identities=25%  Similarity=0.240  Sum_probs=38.6

Q ss_pred             ceeecCCCeEEEEeeCCCccccCCc-cCcCCCCCCE-EECcCCCCCCCCCCCcccCcccceeccccccCCC
Q 024632           65 GATCNNGRIYKLSLTNLSLQGSISP-YLSNCTNLQS-LDLSSNALTGSIPADLQYLVNLAVLNLSANRLAG  133 (265)
Q Consensus        65 ~~~~~~~~l~~L~L~~n~l~~~~p~-~l~~l~~L~~-L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  133 (265)
                      +.+.++++|++|+|++|.+.+.+|. .|.+++++++ +++++|+++...|..|..+++|++|++++|.++.
T Consensus        48 ~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~  118 (350)
T 4ay9_X           48 GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH  118 (350)
T ss_dssp             TSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSS
T ss_pred             HHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccccccccccc
Confidence            4555566666666666665444433 3455555543 3444555654445556666666666666666653

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.16  E-value=3.3e-11  Score=105.04  Aligned_cols=117  Identities=20%  Similarity=0.171  Sum_probs=72.4

Q ss_pred             eeecCCCeE-EEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCC-------------------------CCcccC-
Q 024632           66 ATCNNGRIY-KLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIP-------------------------ADLQYL-  118 (265)
Q Consensus        66 ~~~~~~~l~-~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-------------------------~~l~~l-  118 (265)
                      ++.+++++. .+.+.+|+++...|..+..+++|++|++++|.+.+..+                         ..+..+ 
T Consensus        74 ~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~  153 (350)
T 4ay9_X           74 VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS  153 (350)
T ss_dssp             SBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB
T ss_pred             HhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcc
Confidence            444454433 34445566654445556666666666666665553222                         122233 


Q ss_pred             cccceeccccccCCCCCchHhhhCCcCCEEEccC-ccCcccCC-hhccCCCCCCEEEcccCCCCCCCCh
Q 024632          119 VNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHD-NLLTGQIP-QQLGLLVRLSAFDVSNNKLSGPIPA  185 (265)
Q Consensus       119 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p-~~~~~l~~L~~L~l~~N~l~g~~p~  185 (265)
                      ..++.|++++|.++ .+|.......+|+.+++++ |.++ .+| +.|..+++|+.||+++|+++ .+|.
T Consensus       154 ~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~-~lp~  219 (350)
T 4ay9_X          154 FESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPS  219 (350)
T ss_dssp             SSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCC-CCCS
T ss_pred             hhhhhhcccccccc-CCChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcC-ccCh
Confidence            34677888888887 4555555566788888875 5555 555 45788889999999999998 4554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.08  E-value=6.6e-12  Score=112.93  Aligned_cols=110  Identities=25%  Similarity=0.230  Sum_probs=56.9

Q ss_pred             CeEEEEeeCCCccc----cCCccCcCCCCCCEEECcCCCCCCCCCCCcc-----cCcccceeccccccCCCC----CchH
Q 024632           72 RIYKLSLTNLSLQG----SISPYLSNCTNLQSLDLSSNALTGSIPADLQ-----YLVNLAVLNLSANRLAGE----IPPQ  138 (265)
Q Consensus        72 ~l~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-----~l~~L~~L~Ls~N~l~~~----~p~~  138 (265)
                      +|++|++++|.++.    .++..+..+++|++|++++|.+++..+..+.     ..++|++|++++|.+++.    ++..
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  165 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV  165 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence            46666666666652    3455566666666666666665532222111     133566666666665532    2334


Q ss_pred             hhhCCcCCEEEccCccCcccCChhcc-----CCCCCCEEEcccCCCCC
Q 024632          139 LTLCAYLNVIDLHDNLLTGQIPQQLG-----LLVRLSAFDVSNNKLSG  181 (265)
Q Consensus       139 ~~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~l~~N~l~g  181 (265)
                      +..+++|++|++++|.+++..+..+.     ..++|+.|++++|.+++
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~  213 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS  213 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred             HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence            44555666666666655533222221     23455555555555543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.93  E-value=1.5e-11  Score=108.42  Aligned_cols=137  Identities=18%  Similarity=0.152  Sum_probs=92.4

Q ss_pred             CCeEEEEeeCCCccccCCccC-cCCCCCCEEECcCCCCCCCCCCCc-----ccCcccceeccccccCCC----CCchHhh
Q 024632           71 GRIYKLSLTNLSLQGSISPYL-SNCTNLQSLDLSSNALTGSIPADL-----QYLVNLAVLNLSANRLAG----EIPPQLT  140 (265)
Q Consensus        71 ~~l~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~~----~~p~~~~  140 (265)
                      ++|++|+|++|.++..-...+ ..+++|+.|+|++|.++..-...+     ...++|++|+|++|.++.    .++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            688899999998864322222 235678889999998864322222     235779999999998863    2334456


Q ss_pred             hCCcCCEEEccCccCccc----CChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCC
Q 024632          141 LCAYLNVIDLHDNLLTGQ----IPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD  207 (265)
Q Consensus       141 ~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~  207 (265)
                      ..++|++|+|++|.+++.    ++..+...++|+.|++++|.++..-...+.......+.|+.+++++|+.
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i  251 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL  251 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence            778899999999998742    3455677788999999999987532222322111257788888888863

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.80  E-value=5.1e-11  Score=104.94  Aligned_cols=138  Identities=16%  Similarity=0.130  Sum_probs=96.7

Q ss_pred             CCCeEEEEeeCCCccccCCcc----Cc-CCCCCCEEECcCCCCCCCCCCC-cccCcccceeccccccCCCCCchHhh---
Q 024632           70 NGRIYKLSLTNLSLQGSISPY----LS-NCTNLQSLDLSSNALTGSIPAD-LQYLVNLAVLNLSANRLAGEIPPQLT---  140 (265)
Q Consensus        70 ~~~l~~L~L~~n~l~~~~p~~----l~-~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~~~---  140 (265)
                      .+++++|++++|.++......    +. ..++|++|+|++|.++..-... ...+.+|+.|+|++|.++......+.   
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            467999999999987432222    22 2368999999999987432222 23467899999999999743333332   


Q ss_pred             --hCCcCCEEEccCccCcc----cCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCC
Q 024632          141 --LCAYLNVIDLHDNLLTG----QIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD  207 (265)
Q Consensus       141 --~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~  207 (265)
                        ..++|++|+|++|.++.    .++..+...++|++|++++|.+++.-...+.......+.++.+++++|..
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i  223 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA  223 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence              35789999999999974    34555678899999999999997532222222112256788889999864

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.78  E-value=3.1e-10  Score=105.13  Aligned_cols=134  Identities=10%  Similarity=0.017  Sum_probs=88.4

Q ss_pred             cCCCeEEEEeeCCCccccCCccCcC-CCCCCEEECc----CCCCCCC-----CCCCcccCcccceeccccc--cCCCCCc
Q 024632           69 NNGRIYKLSLTNLSLQGSISPYLSN-CTNLQSLDLS----SNALTGS-----IPADLQYLVNLAVLNLSAN--RLAGEIP  136 (265)
Q Consensus        69 ~~~~l~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls----~N~l~~~-----~p~~l~~l~~L~~L~Ls~N--~l~~~~p  136 (265)
                      .+++|++|++..+.+++..+..+.. +++|+.|+++    .|.+++.     ++..+..+++|+.|+++++  .+++..+
T Consensus       376 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~  455 (592)
T 3ogk_B          376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL  455 (592)
T ss_dssp             HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred             hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH
Confidence            4677788888777777655555544 7788888885    5666642     1222455778888888643  3554444


Q ss_pred             hHhhh-CCcCCEEEccCccCcc-cCChhccCCCCCCEEEcccCCCCCCC-ChhhhccCCCCCCCCCCCCCCCC
Q 024632          137 PQLTL-CAYLNVIDLHDNLLTG-QIPQQLGLLVRLSAFDVSNNKLSGPI-PASLGNRSGNLPKFNASSFEGNK  206 (265)
Q Consensus       137 ~~~~~-l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~g~~-p~~~~~~~~~l~~l~~~~~~~N~  206 (265)
                      ..+.. +++|++|++++|++++ .++..+..+++|+.|++++|.+++.. +.....    ++.|+.+++++|.
T Consensus       456 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~----l~~L~~L~ls~n~  524 (592)
T 3ogk_B          456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK----LPSLRYLWVQGYR  524 (592)
T ss_dssp             HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH----CSSCCEEEEESCB
T ss_pred             HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh----cCccCeeECcCCc
Confidence            44443 7788888888888875 34555677888888888888876543 333333    6777778888876

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.72  E-value=2.4e-08  Score=86.06  Aligned_cols=83  Identities=17%  Similarity=0.135  Sum_probs=60.4

Q ss_pred             CcccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCC-EEEcccCCCCCCCChhhhccCCCCCC
Q 024632          118 LVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLS-AFDVSNNKLSGPIPASLGNRSGNLPK  196 (265)
Q Consensus       118 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~l~~N~l~g~~p~~~~~~~~~l~~  196 (265)
                      +++|+.+++++|.++...+..|.++.+|+.+++++| ++..-+..|.++++|+ .+++.+ .++..-+..|.+    .+.
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~----c~~  298 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMG----CDN  298 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTT----CTT
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhC----Ccc
Confidence            567888888888888555567888888888888887 6645556788888888 888887 666444556655    566


Q ss_pred             CCCCCCCCCC
Q 024632          197 FNASSFEGNK  206 (265)
Q Consensus       197 l~~~~~~~N~  206 (265)
                      |+.+++.+|.
T Consensus       299 L~~l~l~~n~  308 (329)
T 3sb4_A          299 LRYVLATGDK  308 (329)
T ss_dssp             EEEEEECSSC
T ss_pred             CCEEEeCCCc
Confidence            6666665554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.70  E-value=2.5e-08  Score=85.93  Aligned_cols=118  Identities=14%  Similarity=0.192  Sum_probs=72.6

Q ss_pred             CCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccC-------C----------
Q 024632           70 NGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRL-------A----------  132 (265)
Q Consensus        70 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-------~----------  132 (265)
                      +++|+.|+|.+ .++..-+..|.++++|+.++++.|.+....+..|..+.++..+.+..+..       .          
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            77888888887 67644455677788888888888877634444566665565555444211       0          


Q ss_pred             ---------CCCchH---------------------------h-hhCCcCCEEEccCccCcccCChhccCCCCCCEEEcc
Q 024632          133 ---------GEIPPQ---------------------------L-TLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVS  175 (265)
Q Consensus       133 ---------~~~p~~---------------------------~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~  175 (265)
                               +.++..                           + ..+++|+.+++++|+++..-+..|.++++|+.+++.
T Consensus       179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~  258 (329)
T 3sb4_A          179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP  258 (329)
T ss_dssp             EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred             ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence                     001110                           0 126788888888888874445567788888888888


Q ss_pred             cCCCCCCCChhhhc
Q 024632          176 NNKLSGPIPASLGN  189 (265)
Q Consensus       176 ~N~l~g~~p~~~~~  189 (265)
                      +| ++..-+..|.+
T Consensus       259 ~n-i~~I~~~aF~~  271 (329)
T 3sb4_A          259 HN-LKTIGQRVFSN  271 (329)
T ss_dssp             TT-CCEECTTTTTT
T ss_pred             cc-cceehHHHhhC
Confidence            77 65333344444

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.65  E-value=5.2e-09  Score=96.92  Aligned_cols=102  Identities=16%  Similarity=0.231  Sum_probs=57.7

Q ss_pred             eEEEEeeCCC-cc-ccCCccCcCCCCCCEEECcCCCCCCC----CCCCcccCcccceeccccccCCC----CCchHhhhC
Q 024632           73 IYKLSLTNLS-LQ-GSISPYLSNCTNLQSLDLSSNALTGS----IPADLQYLVNLAVLNLSANRLAG----EIPPQLTLC  142 (265)
Q Consensus        73 l~~L~L~~n~-l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~----~~p~~~~~l  142 (265)
                      |++|+++++. +. ..++.....+++|++|++++|.+++.    ++..+..+++|+.|++++|.+++    .++..+.++
T Consensus       140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~  219 (592)
T 3ogk_B          140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC  219 (592)
T ss_dssp             CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred             CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence            7777777665 11 01222233566777777777766543    22233456677777777777652    223334566


Q ss_pred             CcCCEEEccCccCcccCChhccCCCCCCEEEcc
Q 024632          143 AYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVS  175 (265)
Q Consensus       143 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~  175 (265)
                      ++|++|++++|.+.+ +|..+..+++|+.|+++
T Consensus       220 ~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~  251 (592)
T 3ogk_B          220 RSLVSVKVGDFEILE-LVGFFKAAANLEEFCGG  251 (592)
T ss_dssp             TTCCEEECSSCBGGG-GHHHHHHCTTCCEEEEC
T ss_pred             CCCcEEeccCccHHH-HHHHHhhhhHHHhhccc
Confidence            677777777766663 45555555555555555

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.62  E-value=2.8e-08  Score=83.27  Aligned_cols=82  Identities=23%  Similarity=0.353  Sum_probs=59.7

Q ss_pred             EECcCCCCCCCCCCC----cccCcccceeccccccCCC--CCchHhhhCCcCCEEEccCccCcccCChhccCCC--CCCE
Q 024632          100 LDLSSNALTGSIPAD----LQYLVNLAVLNLSANRLAG--EIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLV--RLSA  171 (265)
Q Consensus       100 L~Ls~N~l~~~~p~~----l~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~  171 (265)
                      ++++.|... .++..    ...+++|+.|+|++|.+++  .+|..+..+++|+.|+|++|++++.  ..+..+.  +|+.
T Consensus       148 l~l~~N~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~  224 (267)
T 3rw6_A          148 IDVVLNRRS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEE  224 (267)
T ss_dssp             CCCCTTSHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSE
T ss_pred             ccccCCHHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcce
Confidence            566666433 22221    2457889999999999986  4456778899999999999999854  3344444  8999


Q ss_pred             EEcccCCCCCCCC
Q 024632          172 FDVSNNKLSGPIP  184 (265)
Q Consensus       172 L~l~~N~l~g~~p  184 (265)
                      |++++|.+++.+|
T Consensus       225 L~L~~Npl~~~~~  237 (267)
T 3rw6_A          225 LWLDGNSLCDTFR  237 (267)
T ss_dssp             EECTTSTTGGGCS
T ss_pred             EEccCCcCccccC
Confidence            9999999988776

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.58  E-value=3.7e-09  Score=83.80  Aligned_cols=111  Identities=16%  Similarity=0.205  Sum_probs=56.8

Q ss_pred             cCCCeEEEEeeCC-Cccc----cCCccCcCCCCCCEEECcCCCCCCC----CCCCcccCcccceeccccccCCCC----C
Q 024632           69 NNGRIYKLSLTNL-SLQG----SISPYLSNCTNLQSLDLSSNALTGS----IPADLQYLVNLAVLNLSANRLAGE----I  135 (265)
Q Consensus        69 ~~~~l~~L~L~~n-~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~  135 (265)
                      ..++|++|+|++| .+..    .+...+...++|++|+|++|.+...    +...+...++|++|+|++|.++..    +
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l  113 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL  113 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence            3556677777776 6542    1233345556666666666666521    122233345566666666665521    1


Q ss_pred             chHhhhCCcCCEEEc--cCccCccc----CChhccCCCCCCEEEcccCCC
Q 024632          136 PPQLTLCAYLNVIDL--HDNLLTGQ----IPQQLGLLVRLSAFDVSNNKL  179 (265)
Q Consensus       136 p~~~~~l~~L~~L~L--s~N~l~~~----~p~~~~~l~~L~~L~l~~N~l  179 (265)
                      ...+...++|++|++  ++|.+...    +...+...++|+.|++++|.+
T Consensus       114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            223344455666666  55555532    222333445566666655554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.51  E-value=7.4e-09  Score=95.83  Aligned_cols=132  Identities=10%  Similarity=0.053  Sum_probs=69.8

Q ss_pred             CCCeEEEEeeCCCccccCCccCc-CCCCCCEEECc--C----CCCCCCCCC------CcccCcccceeccccccCCCCCc
Q 024632           70 NGRIYKLSLTNLSLQGSISPYLS-NCTNLQSLDLS--S----NALTGSIPA------DLQYLVNLAVLNLSANRLAGEIP  136 (265)
Q Consensus        70 ~~~l~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls--~----N~l~~~~p~------~l~~l~~L~~L~Ls~N~l~~~~p  136 (265)
                      +++|++|.+..+.+++.....+. .+++|+.|+++  +    |.++ ..|.      .+..+++|+.|++++ .+++..+
T Consensus       371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~  448 (594)
T 2p1m_B          371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT-LEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF  448 (594)
T ss_dssp             CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT-CCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH
T ss_pred             chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc-CCchhhHHHHHHhhCCCccEEeecC-cccHHHH
Confidence            45566666665655543333332 35667777776  2    3443 1221      134456677777755 4443333


Q ss_pred             hHhhh-CCcCCEEEccCccCcccCChhc-cCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCC
Q 024632          137 PQLTL-CAYLNVIDLHDNLLTGQIPQQL-GLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK  206 (265)
Q Consensus       137 ~~~~~-l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~  206 (265)
                      ..+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++..+..+.   ..++.|+.+++++|+
T Consensus       449 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~---~~l~~L~~L~l~~~~  517 (594)
T 2p1m_B          449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANA---SKLETMRSLWMSSCS  517 (594)
T ss_dssp             HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTG---GGGGGSSEEEEESSC
T ss_pred             HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHH---HhCCCCCEEeeeCCC
Confidence            34443 6667777777777654433333 4566777777777776433222221   124556666666654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.51  E-value=1.1e-07  Score=79.52  Aligned_cols=62  Identities=23%  Similarity=0.297  Sum_probs=33.0

Q ss_pred             hCCcCCEEEccCccCcc--cCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCC
Q 024632          141 LCAYLNVIDLHDNLLTG--QIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK  206 (265)
Q Consensus       141 ~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~  206 (265)
                      ++++|+.|+|++|++++  .+|..+..+++|+.|+|++|++++.  ..+..+.+ + .|+.+++++|+
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~-l-~L~~L~L~~Np  231 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKG-L-KLEELWLDGNS  231 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTT-S-CCSEEECTTST
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhccc-C-CcceEEccCCc
Confidence            45566666666666664  3344455566666666666666543  22333211 2 45555666665

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.45  E-value=1.2e-08  Score=80.80  Aligned_cols=120  Identities=11%  Similarity=0.187  Sum_probs=86.8

Q ss_pred             CCccCcCCCCCCEEECcCC-CCCCC----CCCCcccCcccceeccccccCCCC----CchHhhhCCcCCEEEccCccCcc
Q 024632           87 ISPYLSNCTNLQSLDLSSN-ALTGS----IPADLQYLVNLAVLNLSANRLAGE----IPPQLTLCAYLNVIDLHDNLLTG  157 (265)
Q Consensus        87 ~p~~l~~l~~L~~L~Ls~N-~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~  157 (265)
                      +...+...+.|++|+|++| .+...    +...+...++|++|+|++|.+...    +...+...++|++|+|++|.|..
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            3445677889999999999 88632    233455678999999999999732    23445566899999999999985


Q ss_pred             c----CChhccCCCCCCEEEc--ccCCCCCCCChhhhccCCCCCCCCCCCCCCCC
Q 024632          158 Q----IPQQLGLLVRLSAFDV--SNNKLSGPIPASLGNRSGNLPKFNASSFEGNK  206 (265)
Q Consensus       158 ~----~p~~~~~l~~L~~L~l--~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~  206 (265)
                      .    +...+...++|+.|++  ++|.+...--..+.......+.++.+++++|.
T Consensus       108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            3    4556777889999999  88999754333333322225677788887775

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.28  E-value=1.5e-07  Score=87.01  Aligned_cols=36  Identities=17%  Similarity=0.213  Sum_probs=16.6

Q ss_pred             CCCeEEEEeeCCCccccCCccCc-CCCCCCEEECcCC
Q 024632           70 NGRIYKLSLTNLSLQGSISPYLS-NCTNLQSLDLSSN  105 (265)
Q Consensus        70 ~~~l~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N  105 (265)
                      .++|++|++++|.+++..+..+. .+++|++|++++|
T Consensus       104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~  140 (594)
T 2p1m_B          104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC  140 (594)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred             CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence            45555566655555433322222 2444444444444

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.16  E-value=1e-07  Score=83.46  Aligned_cols=15  Identities=33%  Similarity=0.534  Sum_probs=7.0

Q ss_pred             CCCCCEEEcccCCCC
Q 024632          166 LVRLSAFDVSNNKLS  180 (265)
Q Consensus       166 l~~L~~L~l~~N~l~  180 (265)
                      +++|+.|+++.|.+.
T Consensus       278 ~~~L~~LdLs~n~L~  292 (362)
T 2ra8_A          278 LPQLETMDISAGVLT  292 (362)
T ss_dssp             GGGCSEEECCSSCCB
T ss_pred             CCCCCEEECCCCCCC
Confidence            344444444444444

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.08  E-value=4.5e-07  Score=79.35  Aligned_cols=112  Identities=16%  Similarity=0.186  Sum_probs=69.8

Q ss_pred             CCeEEEEeeCCCccccCCccCc--CCCCCCEEECcC--CCCCCC-----CCCCc--ccCcccceeccccccCCCCCchHh
Q 024632           71 GRIYKLSLTNLSLQGSISPYLS--NCTNLQSLDLSS--NALTGS-----IPADL--QYLVNLAVLNLSANRLAGEIPPQL  139 (265)
Q Consensus        71 ~~l~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~--N~l~~~-----~p~~l--~~l~~L~~L~Ls~N~l~~~~p~~~  139 (265)
                      ++|+.|++..+.+.......+.  .+++|+.|+|+.  |...+.     +...+  ..+++|++|+|.+|.+.+..+..+
T Consensus       193 ~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~l  272 (362)
T 2ra8_A          193 PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF  272 (362)
T ss_dssp             TTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHH
T ss_pred             CCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHH
Confidence            4445555544444321111222  578888888753  221111     11112  246899999999988864333344


Q ss_pred             h---hCCcCCEEEccCccCccc----CChhccCCCCCCEEEcccCCCCCC
Q 024632          140 T---LCAYLNVIDLHDNLLTGQ----IPQQLGLLVRLSAFDVSNNKLSGP  182 (265)
Q Consensus       140 ~---~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~g~  182 (265)
                      .   .+++|++|+|+.|.+.+.    ++..+..+++|+.|+++.|.++..
T Consensus       273 a~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~  322 (362)
T 2ra8_A          273 LESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE  322 (362)
T ss_dssp             HHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred             HhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence            3   478999999999999863    344445678999999999988744

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.97  E-value=1.9e-05  Score=69.90  Aligned_cols=61  Identities=8%  Similarity=0.041  Sum_probs=28.5

Q ss_pred             eeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceecccc
Q 024632           66 ATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSA  128 (265)
Q Consensus        66 ~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  128 (265)
                      .+.++++|+.+++.+|.++ .++.......+|+.+.+..+ +...-...|..+++|+.+++..
T Consensus       175 aF~~c~~L~~l~l~~n~l~-~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~  235 (401)
T 4fdw_A          175 IFYYCYNLKKADLSKTKIT-KLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE  235 (401)
T ss_dssp             TTTTCTTCCEEECTTSCCS-EECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred             HhhCcccCCeeecCCCcce-EechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence            3344556666666666555 23322222345555555432 3312223344555555555544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.91  E-value=2.7e-05  Score=68.94  Aligned_cols=132  Identities=13%  Similarity=0.144  Sum_probs=82.5

Q ss_pred             ceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCC-----CCCchHh
Q 024632           65 GATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA-----GEIPPQL  139 (265)
Q Consensus        65 ~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-----~~~p~~~  139 (265)
                      +.+.++++|+.+++.++ ++..-...|.+ .+|+.+++. +.++..-+..|..+++|+.+++.+|.+.     ...+..|
T Consensus       220 ~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF  296 (401)
T 4fdw_A          220 QAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL  296 (401)
T ss_dssp             TTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTT
T ss_pred             hHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHh
Confidence            34556678888888765 44223334555 678888884 4455233456777888888888777654     2334567


Q ss_pred             hhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCC
Q 024632          140 TLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK  206 (265)
Q Consensus       140 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~  206 (265)
                      .++++|+.+++. +.++..-...|.++++|+.+++..| ++..-+..|.+    . .|+.+.+.+|.
T Consensus       297 ~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~----~-~L~~l~l~~n~  356 (401)
T 4fdw_A          297 EGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNN----T-GIKEVKVEGTT  356 (401)
T ss_dssp             TTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSS----S-CCCEEEECCSS
T ss_pred             hCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCC----C-CCCEEEEcCCC
Confidence            777888888887 3466444556777788888888554 54333444444    3 45566666654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.83  E-value=6e-06  Score=64.52  Aligned_cols=35  Identities=9%  Similarity=0.046  Sum_probs=19.7

Q ss_pred             CCeEEEEeeCCCccccCCccCcCCCCCCEEECcCC
Q 024632           71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSN  105 (265)
Q Consensus        71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N  105 (265)
                      -+|+.||++++.++..--..+..+++|+.|+|+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C   95 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC   95 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence            45677777777665322233455556666666555

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.66  E-value=1.3e-05  Score=62.58  Aligned_cols=86  Identities=10%  Similarity=0.059  Sum_probs=64.3

Q ss_pred             CCCCEEECcCCCCCCCCCCCcccCcccceecccccc-CCCCCchHhhhC----CcCCEEEccCcc-CcccCChhccCCCC
Q 024632           95 TNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANR-LAGEIPPQLTLC----AYLNVIDLHDNL-LTGQIPQQLGLLVR  168 (265)
Q Consensus        95 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~p~~~~~l~~  168 (265)
                      ..|+.||++++.++..--..+..+++|+.|+|+++. ++..--..+..+    ++|++|++++|. ++..--..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            479999999999875434457789999999999996 653222334443    479999999985 77533345678999


Q ss_pred             CCEEEcccCC-CC
Q 024632          169 LSAFDVSNNK-LS  180 (265)
Q Consensus       169 L~~L~l~~N~-l~  180 (265)
                      |+.|+++++. ++
T Consensus       141 L~~L~L~~c~~It  153 (176)
T 3e4g_A          141 LKYLFLSDLPGVK  153 (176)
T ss_dssp             CCEEEEESCTTCC
T ss_pred             CCEEECCCCCCCC
Confidence            9999999975 44

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.50  E-value=0.00014  Score=53.88  Aligned_cols=56  Identities=20%  Similarity=0.235  Sum_probs=36.4

Q ss_pred             eeccccccCC-CCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCC
Q 024632          123 VLNLSANRLA-GEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS  180 (265)
Q Consensus       123 ~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~  180 (265)
                      .++.+++.++ ..+|..+.  .+|++|+|++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5677777775 24454322  35777777777777444455667777777777777764

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=97.36  E-value=0.00052  Score=40.06  Aligned_cols=35  Identities=14%  Similarity=0.070  Sum_probs=19.8

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 024632          222 SVLAIVGIGLGSGFASLVISFTGVCIWLKVTEHKM  256 (265)
Q Consensus       222 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (265)
                      ....|++.++++++++++++..+++++|||++++|
T Consensus         8 ~~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~~k   42 (44)
T 2l2t_A            8 RTPLIAAGVIGGLFILVIVGLTFAVYVRRKSIKKK   42 (44)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred             CcceEEEeehHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence            34556666666666655555555566555554443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.20  E-value=0.00079  Score=49.72  Aligned_cols=56  Identities=25%  Similarity=0.244  Sum_probs=32.7

Q ss_pred             EEEeeCCCcc-ccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCC
Q 024632           75 KLSLTNLSLQ-GSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA  132 (265)
Q Consensus        75 ~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  132 (265)
                      .++-++++++ ..+|..+.  ++|++|+|++|+|+...+..|..+++|++|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5666666665 24554332  35677777777776333344556666666666666553

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=97.10  E-value=0.0012  Score=38.63  Aligned_cols=34  Identities=12%  Similarity=0.004  Sum_probs=17.9

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 024632          222 SVLAIVGIGLGSGFASLVISFTGVCIWLKVTEHK  255 (265)
Q Consensus       222 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (265)
                      ....|++.+++++++++++++.++++++||++++
T Consensus         9 ~~~~IA~gVVgGv~~~~ii~~~~~~~~RRr~~~~   42 (44)
T 2ks1_B            9 KIPSIATGMVGALLLLLVVALGIGLFMRRRHIVR   42 (44)
T ss_dssp             CSSSSTHHHHHHHHHHHHHHHHHHHHHHTTTCCS
T ss_pred             CcceEEeehhHHHHHHHHHHHHHHHHhhhhHhhc
Confidence            3444566666655555555555555555444433

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.04  E-value=0.0001  Score=58.52  Aligned_cols=59  Identities=14%  Similarity=0.267  Sum_probs=31.7

Q ss_pred             cccceeccccccCCC----CCchHhhhCCcCCEEEccCccCccc----CChhccCCCCCCEEEcccC
Q 024632          119 VNLAVLNLSANRLAG----EIPPQLTLCAYLNVIDLHDNLLTGQ----IPQQLGLLVRLSAFDVSNN  177 (265)
Q Consensus       119 ~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N  177 (265)
                      ..|+.|+|++|.+..    .+...+..-+.|++|+|++|.|...    +-+.+..-+.|+.|++++|
T Consensus        70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A           70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            445555555555431    1223334445666677777666531    2234445566788888754

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.96  E-value=9e-05  Score=58.88  Aligned_cols=85  Identities=15%  Similarity=0.256  Sum_probs=55.0

Q ss_pred             cCCCeEEEEeeCC-Cccc----cCCccCcCCCCCCEEECcCCCCCCC----CCCCcccCcccceeccccccCCCCC----
Q 024632           69 NNGRIYKLSLTNL-SLQG----SISPYLSNCTNLQSLDLSSNALTGS----IPADLQYLVNLAVLNLSANRLAGEI----  135 (265)
Q Consensus        69 ~~~~l~~L~L~~n-~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~----  135 (265)
                      +.+.|++|+|++| .+..    .+-..+..-+.|+.|+|++|.+...    +.+.+..-+.|+.|+|++|.+...-    
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            4567888888875 6642    1334466667888889988888632    2223334577888899988887321    


Q ss_pred             chHhhhCCcCCEEEccCc
Q 024632          136 PPQLTLCAYLNVIDLHDN  153 (265)
Q Consensus       136 p~~~~~l~~L~~L~Ls~N  153 (265)
                      -+.+..-..|+.|+|++|
T Consensus       119 a~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHTTTTCCCSEEECCCC
T ss_pred             HHHHhhCCceeEEECCCC
Confidence            112333456888888765

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.81  E-value=0.0044  Score=54.24  Aligned_cols=84  Identities=17%  Similarity=0.271  Sum_probs=34.7

Q ss_pred             CcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCC
Q 024632           91 LSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLS  170 (265)
Q Consensus        91 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  170 (265)
                      +.+++.|+.+.+.. .++..-...|..+.+|+.+++..+ ++..-...|.++.+|+.+.+..+ ++..-...|.++.+|+
T Consensus       284 F~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~  360 (394)
T 4gt6_A          284 FMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALN  360 (394)
T ss_dssp             TTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCC
T ss_pred             cccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCC
Confidence            44444444444432 222111223444455555555433 22122234444555555555332 3312223444555555


Q ss_pred             EEEcccC
Q 024632          171 AFDVSNN  177 (265)
Q Consensus       171 ~L~l~~N  177 (265)
                      .+++.+|
T Consensus       361 ~i~~~~~  367 (394)
T 4gt6_A          361 NIEYSGS  367 (394)
T ss_dssp             EEEESSC
T ss_pred             EEEECCc
Confidence            5555443

>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A

Probab=96.76  E-value=0.0036  Score=36.43  Aligned_cols=32  Identities=9%  Similarity=0.079  Sum_probs=15.5

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 024632          223 VLAIVGIGLGSGFASLVISFTGVCIWLKVTEHK  255 (265)
Q Consensus       223 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (265)
                      ...+++.++| +++++++++++++++|||+.++
T Consensus        11 ~~~Ia~~vVG-vll~vi~~l~~~~~~RRR~~~~   42 (44)
T 2jwa_A           11 LTSIISAVVG-ILLVVVLGVVFGILIKRRQQKI   42 (44)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHCSCC
T ss_pred             ccchHHHHHH-HHHHHHHHHHHHhheehhhhhc
Confidence            4446666666 4444444444444444444443

>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A

Probab=96.63  E-value=0.0033  Score=35.56  Aligned_cols=33  Identities=21%  Similarity=0.103  Sum_probs=22.5

Q ss_pred             CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 024632          218 SKGLSVLAIVGIGLGSGFASLVISFTGVCIWLK  250 (265)
Q Consensus       218 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  250 (265)
                      .++++...|++++++.++.+++++.+.+++|+|
T Consensus         5 ~~~ls~GaIAGiVvG~v~gv~li~~l~~~~~rr   37 (38)
T 2k1k_A            5 SRGLTGGEIVAVIFGLLLGAALLLGILVFRSRR   37 (38)
T ss_dssp             STTCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             CCCCCCCceeeeehHHHHHHHHHHHHHHHHeec
Confidence            456778888999888877666565555555533

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.50  E-value=0.0052  Score=53.73  Aligned_cols=105  Identities=12%  Similarity=0.217  Sum_probs=68.8

Q ss_pred             cCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEE
Q 024632           69 NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVI  148 (265)
Q Consensus        69 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  148 (265)
                      +.+.|+.+.+.+ .++..-...|.++.+|+.+++..+ ++..-...|..+.+|+.+.+..+ ++..-...|.++.+|+.+
T Consensus       286 ~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i  362 (394)
T 4gt6_A          286 NCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNI  362 (394)
T ss_dssp             TCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEE
T ss_pred             cccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEE
Confidence            445666666653 344233456888999999999865 55233456889999999999765 553556789999999999


Q ss_pred             EccCccCcccCChhccCCCCCCEEEcccCCC
Q 024632          149 DLHDNLLTGQIPQQLGLLVRLSAFDVSNNKL  179 (265)
Q Consensus       149 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l  179 (265)
                      ++.++....   ..+....+|+.+.+..|.+
T Consensus       363 ~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          363 EYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             EESSCHHHH---HTCBCCCCC----------
T ss_pred             EECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            999887552   4566778888888776654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.48  E-value=0.013  Score=50.68  Aligned_cols=106  Identities=17%  Similarity=0.148  Sum_probs=62.7

Q ss_pred             CCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEc
Q 024632           71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL  150 (265)
Q Consensus        71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  150 (265)
                      ..++.+.+..+ +...-...+.++..|+.+.+..+ ++..-...+..+.+|+.+.+..+ ++......|.++.+|+.+.+
T Consensus       217 ~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l  293 (379)
T 4h09_A          217 KNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVM  293 (379)
T ss_dssp             SSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEE
T ss_pred             cccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccc
Confidence            34445554433 22122334566677777777654 33122344666777777777544 33233345677788888888


Q ss_pred             cCccCcccCChhccCCCCCCEEEcccCCCC
Q 024632          151 HDNLLTGQIPQQLGLLVRLSAFDVSNNKLS  180 (265)
Q Consensus       151 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~  180 (265)
                      .++.++..-...|.++.+|+.+++..+ ++
T Consensus       294 ~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~  322 (379)
T 4h09_A          294 DNSAIETLEPRVFMDCVKLSSVTLPTA-LK  322 (379)
T ss_dssp             CCTTCCEECTTTTTTCTTCCEEECCTT-CC
T ss_pred             cccccceehhhhhcCCCCCCEEEcCcc-cc
Confidence            777776444566777788888887644 44

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.38  E-value=0.0057  Score=53.04  Aligned_cols=107  Identities=15%  Similarity=0.128  Sum_probs=79.5

Q ss_pred             ecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCE
Q 024632           68 CNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNV  147 (265)
Q Consensus        68 ~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  147 (265)
                      .+...|+.+.+..+ ++..-...+.++.+|+.+.+..+ +...-...|..+.+|+.+++.++.++..-...|.++.+|+.
T Consensus       237 ~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~  314 (379)
T 4h09_A          237 YGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSS  314 (379)
T ss_dssp             TTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCE
T ss_pred             cCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCE
Confidence            34577888888776 55334456788899999998754 44233346788999999999998887555678899999999


Q ss_pred             EEccCccCcccCChhccCCCCCCEEEcccC
Q 024632          148 IDLHDNLLTGQIPQQLGLLVRLSAFDVSNN  177 (265)
Q Consensus       148 L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N  177 (265)
                      +.+..+ ++..-...|.++.+|+.+.+..+
T Consensus       315 i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          315 VTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             EECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             EEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            999765 55333467888899998877544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.15  E-value=0.019  Score=50.11  Aligned_cols=108  Identities=11%  Similarity=0.105  Sum_probs=63.3

Q ss_pred             eecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCC--------------
Q 024632           67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA--------------  132 (265)
Q Consensus        67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~--------------  132 (265)
                      +.+..+|+.+.+.++ ++..-...|.++++|+.+++..+ ++..-...|..+.+|+.+.+..+--.              
T Consensus        67 F~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~  144 (394)
T 4fs7_A           67 FQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEI  144 (394)
T ss_dssp             TTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEE
T ss_pred             hhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeeccccccc
Confidence            345678899998754 66333456888899999998755 44122334666666766655433110              


Q ss_pred             -------CCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccC
Q 024632          133 -------GEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNN  177 (265)
Q Consensus       133 -------~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N  177 (265)
                             ..-...|.++.+|+.+.+.++... .-...|..+.+|+.+++..|
T Consensus       145 ~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~  195 (394)
T 4fs7_A          145 TIPEGVTVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN  195 (394)
T ss_dssp             ECCTTCCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT
T ss_pred             ccCccccccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC
Confidence                   001234556677777777654332 33345666667777766554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.06  E-value=0.012  Score=51.51  Aligned_cols=59  Identities=15%  Similarity=0.028  Sum_probs=24.1

Q ss_pred             cCcccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccC
Q 024632          117 YLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNN  177 (265)
Q Consensus       117 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N  177 (265)
                      .+.+|+.+.+..+ ++..-...|.++.+|+.+++..+ ++..-...|.++.+|+.+++..|
T Consensus       295 ~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          295 GCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             TCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred             ccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence            3444444444332 22122233444455555554332 33122334444555555554433

>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}

Probab=91.38  E-value=0.63  Score=28.22  Aligned_cols=36  Identities=8%  Similarity=0.006  Sum_probs=14.7

Q ss_pred             CcchhhHHHHHHHHHHHHHHH-HHHHHHHhhhccccc
Q 024632          221 LSVLAIVGIGLGSGFASLVIS-FTGVCIWLKVTEHKM  256 (265)
Q Consensus       221 ~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  256 (265)
                      ...+.|++.++++.+++.+++ ..+-+-+++|+++..
T Consensus        10 vp~wiIi~svl~GLllL~li~~~LwK~GFFkR~~~~~   46 (54)
T 2knc_A           10 IPIWWVLVGVLGGLLLLTILVLAMWKVGFFKRNRPPL   46 (54)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSC
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCCCc
Confidence            344444444444433333332 223344444444433

>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}

Probab=91.18  E-value=0.36  Score=30.32  Aligned_cols=15  Identities=27%  Similarity=0.069  Sum_probs=7.0

Q ss_pred             HHHHHHHHHHHHHHH
Q 024632          229 IGLGSGFASLVISFT  243 (265)
Q Consensus       229 ~~~~~~~~~~~~~~~  243 (265)
                      +++|+++.+++.+..
T Consensus        12 ivlGg~~~lll~~gl   26 (70)
T 2klu_A           12 IVLGGVAGLLLFIGL   26 (70)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHH
Confidence            455555544433333

>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}

Probab=88.83  E-value=1.3  Score=26.73  Aligned_cols=15  Identities=7%  Similarity=0.025  Sum_probs=6.5

Q ss_pred             cchhhHHHHHHHHHH
Q 024632          222 SVLAIVGIGLGSGFA  236 (265)
Q Consensus       222 ~~~~i~~~~~~~~~~  236 (265)
                      ..+.|++.++++.++
T Consensus         8 p~WiIi~svl~GLLL   22 (54)
T 2l8s_A            8 PLWVILLSAFAGLLL   22 (54)
T ss_dssp             CTHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHH
Confidence            344444444444333

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=87.37  E-value=1.5  Score=25.32  Aligned_cols=16  Identities=6%  Similarity=-0.409  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHhhhccc
Q 024632          239 VISFTGVCIWLKVTEH  254 (265)
Q Consensus       239 ~~~~~~~~~~~~~~~~  254 (265)
                      ++.++++..+++++||
T Consensus        29 ~~~~~~~RRr~~~~kR   44 (44)
T 2ks1_B           29 LGIGLFMRRRHIVRKR   44 (44)
T ss_dssp             HHHHHHHHTTTCCSCC
T ss_pred             HHHHHHhhhhHhhccC
Confidence            4555666666665554

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=85.01  E-value=1.6  Score=25.25  Aligned_cols=33  Identities=12%  Similarity=0.083  Sum_probs=18.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 024632          226 IVGIGLGSGFASLVISFTGVCIWLKVTEHKMAL  258 (265)
Q Consensus       226 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (265)
                      +.+|+.+++..+++++++....|...|||+.+.
T Consensus         9 ~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~~   41 (44)
T 2l2t_A            9 TPLIAAGVIGGLFILVIVGLTFAVYVRRKSIKK   41 (44)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred             cceEEEeehHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            344444444445555555666666666655543

>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1

Probab=84.90  E-value=0.34  Score=26.56  Aligned_cols=17  Identities=6%  Similarity=-0.044  Sum_probs=6.6

Q ss_pred             HHHHHHHHHHHHHHHhh
Q 024632          234 GFASLVISFTGVCIWLK  250 (265)
Q Consensus       234 ~~~~~~~~~~~~~~~~~  250 (265)
                      .+++++++..+.+++||
T Consensus        17 lll~vii~l~~~~~iRR   33 (35)
T 1iij_A           17 VLLFLILVVVVGILIKR   33 (35)
T ss_dssp             HHHHHHHTTTTTHHHHH
T ss_pred             HHHHHHHHHHhheEEee
Confidence            33333333334444443

>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}

Probab=84.58  E-value=0.8  Score=28.76  Aligned_cols=29  Identities=14%  Similarity=-0.065  Sum_probs=17.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 024632          225 AIVGIGLGSGFASLVISFTGVCIWLKVTE  253 (265)
Q Consensus       225 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (265)
                      .+++.+++..+...++++..+.+|+|||+
T Consensus        12 ivlGg~~~lll~~glcI~ccvkcrhRrrq   40 (70)
T 2klu_A           12 IVLGGVAGLLLFIGLGIFFSVRSRHRRRQ   40 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCCSSS
T ss_pred             HHHhHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            45566666666666666666656544443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	265
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	5e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	9e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.003

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 67.1 bits (162), Expect = 1e-13
 Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 5/74 (6%)

Query: 142 CAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASS 201
              LN +DL +N + G +PQ L  L  L + +VS N L G IP       GNL +F+ S+
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-----GGNLQRFDVSA 297

Query: 202 FEGNKDLYGYPLPP 215
           +  NK L G PLP 
Sbjct: 298 YANNKCLCGSPLPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 50.5 bits (119), Expect = 6e-08
 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 93  NCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHD 152
              NL  LDL +N + G++P  L  L  L  LN+S N L GEI PQ       +V    +
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYAN 300

Query: 153 NLLTGQIP 160
           N      P
Sbjct: 301 NKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 48.2 bits (113), Expect = 3e-07
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 78  LTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIP 136
           L N  + G++   L+    L SL++S N L G IP     L    V   + N+     P
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN-LQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 44.4 bits (103), Expect = 5e-06
 Identities = 44/176 (25%), Positives = 68/176 (38%), Gaps = 31/176 (17%)

Query: 19  LCSSDPNDEACLTHLSQSLKDPYKNLQNWTKSTFSNACNGFTSYLPGATCNNGRIYKLSL 78
           LC  +P D+  L  + + L +P   L +W  +T  + CN       G  C+         
Sbjct: 2   LC--NPQDKQALLQIKKDLGNPT-TLSSWLPTT--DCCN---RTWLGVLCDTD------- 46

Query: 79  TNLSLQGSISPYLSNCTNLQSLDLSSNALTG--SIPADLQYLVNLAVLNLSAN-RLAGEI 135
                        +    + +LDLS   L     IP+ L  L  L  L +     L G I
Sbjct: 47  -------------TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI 93

Query: 136 PPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRS 191
           PP +     L+ + +    ++G IP  L  +  L   D S N LSG +P S+ +  
Sbjct: 94  PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 4e-09
 Identities = 31/149 (20%), Positives = 50/149 (33%), Gaps = 3/149 (2%)

Query: 56  CNGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADL 115
            N   +       + G +  L L    +            +L  L L  N +    P   
Sbjct: 138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197

Query: 116 QYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVS 175
           + L  L  L L AN L+      L     L  + L+DN       +   L   L  F  S
Sbjct: 198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC-DCRARPLWAWLQKFRGS 256

Query: 176 NNKLSGPIPASLGNRSGNLPKFNASSFEG 204
           ++++   +P  L  R   L +  A+  +G
Sbjct: 257 SSEVPCSLPQRLAGRD--LKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 6e-04
 Identities = 25/158 (15%), Positives = 47/158 (29%), Gaps = 4/158 (2%)

Query: 30  LTHLSQSLKDPYKNLQNWTKSTFSNACNGFTSYLPGATCNNGRIYKLSLTNLSLQGSISP 89
           ++H+  +     +NL      +   A     ++   A      +   +     L+     
Sbjct: 44  ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ----LRSVDPA 99

Query: 90  YLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVID 149
                  L +L L    L    P   + L  L  L L  N L             L  + 
Sbjct: 100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF 159

Query: 150 LHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASL 187
           LH N ++    +    L  L    +  N+++   P + 
Sbjct: 160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.9 bits (123), Expect = 2e-08
 Identities = 30/176 (17%), Positives = 53/176 (30%), Gaps = 28/176 (15%)

Query: 29  CLTHLSQSLKDPYKNLQNWTKSTFSNACNGFTSYLPGATCNNGRIYKLSLTNLSLQGSIS 88
            L   +  + D             S   N       G   +   +  L L N  +     
Sbjct: 201 SLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP 258

Query: 89  PYLSNCTNLQSLDLSSNALTGSIP--------------------ADLQYLVNLAVLNLSA 128
             LS  T L  L L +N ++   P                    + +  L NL  L L  
Sbjct: 259 --LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYF 316

Query: 129 NRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIP 184
           N ++   P  ++    L  +   +N ++      L  L  ++     +N++S   P
Sbjct: 317 NNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.5 bits (122), Expect = 3e-08
 Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 6/86 (6%)

Query: 68  CNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLS 127
            N   +  L+L   ++       +S+ T LQ L  ++N ++    + L  L N+  L+  
Sbjct: 304 SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAG 359

Query: 128 ANRLAGEIPPQLTLCAYLNVIDLHDN 153
            N+++   P  L     +  + L+D 
Sbjct: 360 HNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 2e-05
 Identities = 33/140 (23%), Positives = 54/140 (38%), Gaps = 10/140 (7%)

Query: 47  WTKSTFSNACNGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNA 106
               +     N  +   P     N  + +LSL    L+      L++ TNL  LDL++N 
Sbjct: 197 TNLESLIATNNQISDITPLGILTN--LDELSLNGNQLKDI--GTLASLTNLTDLDLANNQ 252

Query: 107 LTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLL 166
           ++   P  L  L  L  L L AN+++   P    L     + +L  N    +    +  L
Sbjct: 253 ISNLAP--LSGLTKLTELKLGANQISNISP----LAGLTALTNLELNENQLEDISPISNL 306

Query: 167 VRLSAFDVSNNKLSGPIPAS 186
             L+   +  N +S   P S
Sbjct: 307 KNLTYLTLYFNNISDISPVS 326

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 8e-04
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 75  KLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGE 134
           K  L   ++  ++S   ++   + +L      +  SI   ++YL NL  +N S N+L   
Sbjct: 26  KTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTDI 81

Query: 135 IP 136
            P
Sbjct: 82  TP 83

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (110), Expect = 8e-07
 Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 5/74 (6%)

Query: 96  NLQSLDLSSNALTGSIPADL-QYLVNLAVLNLSANRL----AGEIPPQLTLCAYLNVIDL 150
           ++QSLD+    L+ +  A+L   L    V+ L    L      +I   L +   L  ++L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 151 HDNLLTGQIPQQLG 164
             N L       + 
Sbjct: 63  RSNELGDVGVHCVL 76

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 2e-05
 Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 9/94 (9%)

Query: 56  CNGFTSYLPGATCNNGRIYKLSLTNLSLQG----SISPYLSNCTNLQSLDLSSNALTGSI 111
             G      G       +  L L +  +      S++  L    +L+ LDLS+N L  + 
Sbjct: 354 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 413

Query: 112 PADL-----QYLVNLAVLNLSANRLAGEIPPQLT 140
              L     Q    L  L L     + E+  +L 
Sbjct: 414 ILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQ 447

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 3e-04
 Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 5/76 (6%)

Query: 119 VNLAVLNLSANRLAGEIPPQL-TLCAYLNVIDLHDNLLTGQ----IPQQLGLLVRLSAFD 173
           +++  L++    L+     +L  L     V+ L D  LT      I   L +   L+  +
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 174 VSNNKLSGPIPASLGN 189
           + +N+L       +  
Sbjct: 62  LRSNELGDVGVHCVLQ 77

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.001
 Identities = 21/111 (18%), Positives = 35/111 (31%), Gaps = 23/111 (20%)

Query: 90  YLSNCTNLQSLDLSSNALTG----SIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYL 145
                + L+ L L+   ++     S+ A L    +L  L+LS N L      QL      
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES--- 420

Query: 146 NVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPK 196
                        + Q   LL +L    + +   S  +   L     + P 
Sbjct: 421 -------------VRQPGCLLEQL---VLYDIYWSEEMEDRLQALEKDKPS 455

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (81), Expect = 0.004
 Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 7/67 (10%)

Query: 68  CNNGRIYKLSLTNLSLQG--SISPYLSNCTNLQSLDLSSNALTGSIPADL-----QYLVN 120
               ++ +L    L+      IS  L     L  L+L SN L       +          
Sbjct: 26  LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCK 85

Query: 121 LAVLNLS 127
           +  L+L 
Sbjct: 86  IQKLSLQ 92

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.8 bits (107), Expect = 2e-06
 Identities = 38/198 (19%), Positives = 68/198 (34%), Gaps = 7/198 (3%)

Query: 32  HLSQSLKDPYKNLQNWTKSTFSNACNGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYL 91
            +++  K  +  L               +    GA      + KLS   ++     +   
Sbjct: 111 EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG---MKKLSYIRIADTNITTIPQ 167

Query: 92  SNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLH 151
               +L  L L  N +T    A L+ L NLA L LS N ++      L    +L  + L+
Sbjct: 168 GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 227

Query: 152 DNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRS--GNLPKFNASSFEGNKDLY 209
           +N L  ++P  L     +    + NN +S                  ++  S   N  + 
Sbjct: 228 NNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP-VQ 285

Query: 210 GYPLPPMKSKGLSVLAIV 227
            + + P   + + V A V
Sbjct: 286 YWEIQPSTFRCVYVRAAV 303

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.4 bits (106), Expect = 3e-06
 Identities = 21/95 (22%), Positives = 33/95 (34%)

Query: 95  TNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNL 154
            +   LDL +N +T     D + L NL  L L  N+++   P        L  + L  N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 155 LTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGN 189
           L     +    L  L   +    K+   +   L  
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQ 125

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.9 bits (97), Expect = 3e-05
 Identities = 24/115 (20%), Positives = 37/115 (32%), Gaps = 1/115 (0%)

Query: 75  KLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGE 134
            L L N  +         N  NL +L L +N ++   P     LV L  L LS N+L   
Sbjct: 35  LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 94

Query: 135 IPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGN 189
                     L V +     +   +   L  ++ +        K SG    +   
Sbjct: 95  PEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN-PLKSSGIENGAFQG 148

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.1 bits (87), Expect = 6e-04
 Identities = 25/140 (17%), Positives = 44/140 (31%), Gaps = 3/140 (2%)

Query: 40  PYKNLQNWTKSTFSNACNGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQS 99
           P K  +   +                   N   + +L    L   G  +        L  
Sbjct: 95  PEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 154

Query: 100 LDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQI 159
           + ++   +T +IP  L    +L  L+L  N++       L     L  + L  N ++   
Sbjct: 155 IRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD 211

Query: 160 PQQLGLLVRLSAFDVSNNKL 179
              L     L    ++NNKL
Sbjct: 212 NGSLANTPHLRELHLNNNKL 231

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.0 bits (98), Expect = 9e-06
 Identities = 29/121 (23%), Positives = 42/121 (34%), Gaps = 5/121 (4%)

Query: 76  LSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEI 135
           L L +  L  ++  +L     +  LDLS N L    PA L  L  L VL  S N     +
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNA-LENV 58

Query: 136 PPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLP 195
                L     ++  ++ L      Q L    RL   ++  N L           +  LP
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEMLP 117

Query: 196 K 196
            
Sbjct: 118 S 118

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.5 bits (98), Expect = 2e-05
 Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 10/90 (11%)

Query: 102 LSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQ 161
              NA +  I +      +L  LN+S N+L  E+P        L  +    N L  ++P+
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVPE 321

Query: 162 QLGLLVRLSAFDVSNNKLSG--PIPASLGN 189
               L +L    V  N L     IP S+ +
Sbjct: 322 LPQNLKQL---HVEYNPLREFPDIPESVED 348

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 5e-05
 Identities = 11/75 (14%), Positives = 23/75 (30%), Gaps = 3/75 (4%)

Query: 88  SPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNV 147
           +   +N    + LDL    +   I      L     ++ S N +         L   L  
Sbjct: 11  AAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKT 67

Query: 148 IDLHDNLLTGQIPQQ 162
           + +++N +       
Sbjct: 68  LLVNNNRICRIGEGL 82

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 9e-05
 Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 6/99 (6%)

Query: 29  CLTHLSQSLKDPYKNLQNWTKSTFSNACNGFTSYLPGATCNNGRIYKLSLTNLSLQGSIS 88
            L      + +             S      +   P A  +     K     +S    IS
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKIS---DIS 189

Query: 89  PYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLS 127
           P L++  NL  + L +N ++   P  L    NL ++ L+
Sbjct: 190 P-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 86  SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYL 145
           S    L+N + L +L    N ++   P  L  L NL  ++L  N+++   P  L   + L
Sbjct: 164 SDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNL 219

Query: 146 NVIDLHD 152
            ++ L +
Sbjct: 220 FIVTLTN 226

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 2e-04
 Identities = 15/93 (16%), Positives = 34/93 (36%), Gaps = 3/93 (3%)

Query: 98  QSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTG 157
           Q+LDL+   L   +   L     +       + +   +    +    +  +DL ++++  
Sbjct: 3   QTLDLTGKNLHPDVTGRLL-SQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEV 60

Query: 158 -QIPQQLGLLVRLSAFDVSNNKLSGPIPASLGN 189
             +   L    +L    +   +LS PI  +L  
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK 93

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 5e-04
 Identities = 7/47 (14%), Positives = 15/47 (31%), Gaps = 3/47 (6%)

Query: 91  LSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPP 137
               +    LD+S   +       L+ L  L   +    +   ++P 
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT 240

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.3 bits (87), Expect = 5e-04
 Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 9/73 (12%)

Query: 75  KLSLTNLSLQG--SISPYLSNCTNLQSLDLSSNALTG----SIPADLQYLVNLAVLNLSA 128
            L L  ++ +   S+   L    +++ + LS N +       +  ++    +L +   S 
Sbjct: 9   SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 129 N---RLAGEIPPQ 138
               R+  EIP  
Sbjct: 69  IFTGRVKDEIPEA 81

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.002
 Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 4/65 (6%)

Query: 64  PGATCNN-GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLA 122
           P    +      +++    +L  ++ P L    +   L LS N L     A L     L 
Sbjct: 2   PICEVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLT 58

Query: 123 VLNLS 127
            LNL 
Sbjct: 59  QLNLD 63

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 89  PYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLS 127
             L+  T LQ+L LS N ++  + A L  L NL VL L 
Sbjct: 172 VPLAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELF 208

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	265
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.92
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.83
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.77
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.76
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.76
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.71
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.66
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.63
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.61
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.57
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.55
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.53
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.47
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.47
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.45
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.44
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.42
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.38
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.36
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.35
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.33
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.33
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.25
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.21
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.16
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.09
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.95
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.86
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.86
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.65
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.57
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.52
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.5
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.43
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.41
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.4
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.27
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.21
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.74
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.42
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.03
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.42

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.92  E-value=5.6e-25  Score=187.66  Aligned_cols=164  Identities=29%  Similarity=0.534  Sum_probs=148.8

Q ss_pred             CCChhHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeecC----CCeEEEEeeCCCccc--cCCccCcCC
Q 024632           21 SSDPNDEACLTHLSQSLKDPYKNLQNWTKSTFSNACNGFTSYLPGATCNN----GRIYKLSLTNLSLQG--SISPYLSNC   94 (265)
Q Consensus        21 ~~~~~~~~~l~~~~~~l~~~~~~~~~w~~~~~~~~c~~~~~~~~~~~~~~----~~l~~L~L~~n~l~~--~~p~~l~~l   94 (265)
                      -|.++|++||++||+.+.+|. .+.+|...  .|+|.   +.|.|+.|+.    .+|+.|+|+++.+.|  .+|+.++++
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~-~l~sW~~~--~d~C~---~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L   75 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPT--TDCCN---RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANL   75 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCCTT--SCTTT---TCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGC
T ss_pred             CCCHHHHHHHHHHHHHCCCCC-cCCCCCCC--CCCCC---CcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcC
Confidence            377899999999999998875 68999764  37885   2499999964    369999999999987  589999999


Q ss_pred             CCCCEEECcC-CCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEE
Q 024632           95 TNLQSLDLSS-NALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFD  173 (265)
Q Consensus        95 ~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  173 (265)
                      ++|++|+|++ |++.|.+|..++++++|++|+|++|++.+..+..+..+..|+.+++++|.+.+.+|..+..+++++.++
T Consensus        76 ~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~  155 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT  155 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred             ccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceee
Confidence            9999999986 899999999999999999999999999998899999999999999999999999999999999999999


Q ss_pred             cccCCCCCCCChhhhcc
Q 024632          174 VSNNKLSGPIPASLGNR  190 (265)
Q Consensus       174 l~~N~l~g~~p~~~~~~  190 (265)
                      +++|.++|.+|+.+...
T Consensus       156 l~~n~l~~~ip~~~~~l  172 (313)
T d1ogqa_         156 FDGNRISGAIPDSYGSF  172 (313)
T ss_dssp             CCSSCCEEECCGGGGCC
T ss_pred             ccccccccccccccccc
Confidence            99999999999988773

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.83  E-value=6.4e-22  Score=168.45  Aligned_cols=149  Identities=34%  Similarity=0.565  Sum_probs=107.1

Q ss_pred             CCceeecCCCeEEEEeeC-CCccccCCccCcCCCCCCEEECcCCCCCCC------------------------CCCCccc
Q 024632           63 LPGATCNNGRIYKLSLTN-LSLQGSISPYLSNCTNLQSLDLSSNALTGS------------------------IPADLQY  117 (265)
Q Consensus        63 ~~~~~~~~~~l~~L~L~~-n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~------------------------~p~~l~~  117 (265)
                      .|..++++++|++|+|++ |.+.|.+|+.++++++|++|++++|++.+.                        +|..+..
T Consensus        68 lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~  147 (313)
T d1ogqa_          68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS  147 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG
T ss_pred             CChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhcc
Confidence            566677788888888875 777777887788888877777777766543                        3444555


Q ss_pred             CcccceeccccccCCCCCchH-----------------------------------------------------------
Q 024632          118 LVNLAVLNLSANRLAGEIPPQ-----------------------------------------------------------  138 (265)
Q Consensus       118 l~~L~~L~Ls~N~l~~~~p~~-----------------------------------------------------------  138 (265)
                      ++.++.+++++|.+++.+|..                                                           
T Consensus       148 l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~  227 (313)
T d1ogqa_         148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH  227 (313)
T ss_dssp             CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEE
T ss_pred             Ccccceeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            555555555555554333321                                                           


Q ss_pred             ------------hhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCC
Q 024632          139 ------------LTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK  206 (265)
Q Consensus       139 ------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~  206 (265)
                                  ++.+++|+.|++++|+++|.+|..++++++|++|++++|+++|.+|. ++    .++.|+.+++++|+
T Consensus       228 ~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~----~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GG----NLQRFDVSAYANNK  302 (313)
T ss_dssp             CCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-ST----TGGGSCGGGTCSSS
T ss_pred             cccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cc----cCCCCCHHHhCCCc
Confidence                        22346677888888888888888888888888888888888888874 23    37788889999999


Q ss_pred             CCCCCCCCCC
Q 024632          207 DLYGYPLPPM  216 (265)
Q Consensus       207 ~~c~~~~~~~  216 (265)
                      .+||.|+|.|
T Consensus       303 ~l~g~plp~c  312 (313)
T d1ogqa_         303 CLCGSPLPAC  312 (313)
T ss_dssp             EEESTTSSCC
T ss_pred             cccCCCCCCC
Confidence            9999988765

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.77  E-value=1.3e-18  Score=137.74  Aligned_cols=130  Identities=19%  Similarity=0.218  Sum_probs=96.1

Q ss_pred             EEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCC-CCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCc
Q 024632           75 KLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSI-PADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDN  153 (265)
Q Consensus        75 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  153 (265)
                      +++.++++++ .+|..+.  +++++|+|++|++++.+ +..|..+++|+.|++++|.+.+..+..+..+++|++|++++|
T Consensus        12 ~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             EEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            5677777777 6676553  57788888888886544 445677888888888888887777777777888888888888


Q ss_pred             cCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCCCC
Q 024632          154 LLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGY  211 (265)
Q Consensus       154 ~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~~  211 (265)
                      ++++..|..|.++++|++|+|++|++++..|..|..    ++.++.+++++|++.|.+
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~----l~~L~~l~L~~N~~~~~~  142 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH----LNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTT----CTTCCEEECTTCCBCCSG
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCHHHhcC----Cccccccccccccccccc
Confidence            888666677777888888888888887655666655    677777788888777654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3.4e-18  Score=142.07  Aligned_cols=140  Identities=27%  Similarity=0.228  Sum_probs=99.2

Q ss_pred             ceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCccc------------------------Ccc
Q 024632           65 GATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQY------------------------LVN  120 (265)
Q Consensus        65 ~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~------------------------l~~  120 (265)
                      +.+.++++|++|+|++|.++ .+|. +..+++|++|++++|+++ ..+..+..                        +.+
T Consensus        49 ~~f~~l~~L~~L~L~~N~l~-~l~~-~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~  125 (266)
T d1p9ag_          49 ATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE  125 (266)
T ss_dssp             GGGTTCTTCCEEECTTSCCC-EEEC-CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTT
T ss_pred             HHhhcccccccccccccccc-cccc-cccccccccccccccccc-ccccccccccccccccccccccceeeccccccccc
Confidence            44555666666666666665 2332 345555666666666555 23334444                        445


Q ss_pred             cceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCC
Q 024632          121 LAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNAS  200 (265)
Q Consensus       121 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~  200 (265)
                      +++|++++|.++...+..+..+++++.+++++|++++..+..+..+++|++|++++|+++ .+|+.+..    ++.++.+
T Consensus       126 l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~----~~~L~~L  200 (266)
T d1p9ag_         126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG----SHLLPFA  200 (266)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT----TCCCSEE
T ss_pred             cccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCC----CCCCCEE
Confidence            555555556665444555667888999999999999777778899999999999999998 78888776    7788899


Q ss_pred             CCCCCCCCCCCC
Q 024632          201 SFEGNKDLYGYP  212 (265)
Q Consensus       201 ~~~~N~~~c~~~  212 (265)
                      +++|||+.|+|.
T Consensus       201 ~L~~Np~~CdC~  212 (266)
T d1p9ag_         201 FLHGNPWLCNCE  212 (266)
T ss_dssp             ECCSCCBCCSGG
T ss_pred             EecCCCCCCCcc
Confidence            999999999863

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.4e-18  Score=145.72  Aligned_cols=150  Identities=24%  Similarity=0.193  Sum_probs=132.4

Q ss_pred             CCCCCCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchH
Q 024632           59 FTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQ  138 (265)
Q Consensus        59 ~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~  138 (265)
                      ....-+..+.++++|++|++++|.+....+..+...++|+.+++++|.+++..+..|..+++|+.|++++|++++..+..
T Consensus        93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~  172 (284)
T d1ozna_          93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA  172 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             cccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhh
Confidence            33333566778899999999999998666777888999999999999999655677888999999999999999877888


Q ss_pred             hhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCCCCC
Q 024632          139 LTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYP  212 (265)
Q Consensus       139 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~~~  212 (265)
                      +.++++|+.+++++|++++..|..|..+++|++|++++|.+++..|..+.+    ++.++.+++++|++.|.|+
T Consensus       173 f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~----~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP----LRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTT----CTTCCEEECCSSCEECSGG
T ss_pred             hccccccchhhhhhccccccChhHhhhhhhccccccccccccccccccccc----ccccCEEEecCCCCCCCcc
Confidence            999999999999999999888999999999999999999999877777776    7889999999999999764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.71  E-value=3e-17  Score=129.81  Aligned_cols=114  Identities=19%  Similarity=0.235  Sum_probs=103.0

Q ss_pred             CCeEEEEeeCCCccccC-CccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEE
Q 024632           71 GRIYKLSLTNLSLQGSI-SPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVID  149 (265)
Q Consensus        71 ~~l~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  149 (265)
                      +++++|+|++|.|++.+ +..|..+++|++|++++|.+.+..+..+..+++|++|+|++|+++...|..|.++++|++|+
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence            57899999999998644 55678999999999999999988888899999999999999999977788899999999999


Q ss_pred             ccCccCcccCChhccCCCCCCEEEcccCCCCCCCC
Q 024632          150 LHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIP  184 (265)
Q Consensus       150 Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p  184 (265)
                      |++|+|++..|+.|..+++|+++++++|.+....+
T Consensus       109 L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~  143 (192)
T d1w8aa_         109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             cCCccccccCHHHhcCCcccccccccccccccccc
Confidence            99999998888889999999999999999976543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=9.7e-17  Score=117.97  Aligned_cols=103  Identities=28%  Similarity=0.288  Sum_probs=88.6

Q ss_pred             EEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCc
Q 024632           74 YKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDN  153 (265)
Q Consensus        74 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  153 (265)
                      +.|+|++|+++ .++ .+..+++|++|++++|.++ .+|+.+..+++|+.|++++|.++ .+| .+..+++|+++++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCC
Confidence            47899999998 555 4889999999999999998 78888999999999999999998 455 4889999999999999


Q ss_pred             cCcccC-ChhccCCCCCCEEEcccCCCCC
Q 024632          154 LLTGQI-PQQLGLLVRLSAFDVSNNKLSG  181 (265)
Q Consensus       154 ~l~~~~-p~~~~~l~~L~~L~l~~N~l~g  181 (265)
                      +++... ...+..+++|+.+++++|+++.
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            998432 2567889999999999999874

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=7.9e-16  Score=127.51  Aligned_cols=130  Identities=25%  Similarity=0.197  Sum_probs=97.5

Q ss_pred             CCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEc
Q 024632           71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL  150 (265)
Q Consensus        71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  150 (265)
                      +++++|+|++|.+++..+..|.++++|++|+|++|+++ .+|. +..+++|++|++++|+++ ..+..+..+++|+.|++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~-~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l  107 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV  107 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC-CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred             cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-cccc-cccccccccccccccccc-ccccccccccccccccc
Confidence            57899999999999666677999999999999999998 5653 578999999999999998 45666777777777777


Q ss_pred             cCccCcccCCh------------------------hccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCC
Q 024632          151 HDNLLTGQIPQ------------------------QLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK  206 (265)
Q Consensus       151 s~N~l~~~~p~------------------------~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~  206 (265)
                      ++|.+....+.                        .+..+++++.+++++|++++..+..+..    ++.|+.+++++|.
T Consensus       108 ~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~----l~~L~~L~Ls~N~  183 (266)
T d1p9ag_         108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG----LENLDTLLLQENS  183 (266)
T ss_dssp             CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTT----CTTCCEEECCSSC
T ss_pred             cccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCcccccc----ccccceeecccCC
Confidence            77666543333                        3344556666666666666544444444    6777788888886


Q ss_pred             C
Q 024632          207 D  207 (265)
Q Consensus       207 ~  207 (265)
                      .
T Consensus       184 L  184 (266)
T d1p9ag_         184 L  184 (266)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.3e-15  Score=117.04  Aligned_cols=126  Identities=17%  Similarity=0.187  Sum_probs=103.8

Q ss_pred             eecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCC
Q 024632           67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLN  146 (265)
Q Consensus        67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  146 (265)
                      +.+..++++|+|++|+|+ .++..+..+++|+.|++++|.++ .++ .+..+++|++|++++|.++...+..+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccc
Confidence            346678999999999998 56776778999999999999998 564 588999999999999999965555677899999


Q ss_pred             EEEccCccCcccCC--hhccCCCCCCEEEcccCCCCCCCCh----hhhccCCCCCCCCCCC
Q 024632          147 VIDLHDNLLTGQIP--QQLGLLVRLSAFDVSNNKLSGPIPA----SLGNRSGNLPKFNASS  201 (265)
Q Consensus       147 ~L~Ls~N~l~~~~p--~~~~~l~~L~~L~l~~N~l~g~~p~----~~~~~~~~l~~l~~~~  201 (265)
                      +|++++|+++ .++  ..+..+++|+++++++|+++ ..|.    .+..    +|+++.++
T Consensus        91 ~L~L~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~----lp~L~~LD  145 (162)
T d1a9na_          91 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYK----VPQVRVLD  145 (162)
T ss_dssp             EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHH----CTTCSEET
T ss_pred             cceecccccc-ccccccccccccccchhhcCCCccc-cccchHHHHHHH----CCCcCeeC
Confidence            9999999998 444  35788999999999999997 4553    3444    67776665

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=8.9e-15  Score=122.06  Aligned_cols=147  Identities=16%  Similarity=0.100  Sum_probs=110.0

Q ss_pred             CCCCCCCceeecCCCeEEEEeeCCCccc-------------------------cCCccCcCCCCCCEEECcCCCCCCCCC
Q 024632           58 GFTSYLPGATCNNGRIYKLSLTNLSLQG-------------------------SISPYLSNCTNLQSLDLSSNALTGSIP  112 (265)
Q Consensus        58 ~~~~~~~~~~~~~~~l~~L~L~~n~l~~-------------------------~~p~~l~~l~~L~~L~Ls~N~l~~~~p  112 (265)
                      .++...++.+.++++|++|++++|.+..                         ..+..+.++++|++|++++|.+....+
T Consensus        43 ~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~  122 (284)
T d1ozna_          43 RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP  122 (284)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             cCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecCCcccccccc
Confidence            3433333455566777777777766542                         124456777888888888888875556


Q ss_pred             CCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCC
Q 024632          113 ADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSG  192 (265)
Q Consensus       113 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~  192 (265)
                      ..+....+|+.+++++|.+++..+..+..+++|+.|++++|++++..+..|..+++|+.+++++|++++..|..|.+   
T Consensus       123 ~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~---  199 (284)
T d1ozna_         123 GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD---  199 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT---
T ss_pred             cccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhh---
Confidence            66777888888888888888666667778888888888888888777778888888889999988888777887776   


Q ss_pred             CCCCCCCCCCCCCCCC
Q 024632          193 NLPKFNASSFEGNKDL  208 (265)
Q Consensus       193 ~l~~l~~~~~~~N~~~  208 (265)
                       ++.++.+++++|...
T Consensus       200 -l~~L~~L~l~~N~i~  214 (284)
T d1ozna_         200 -LGRLMTLYLFANNLS  214 (284)
T ss_dssp             -CTTCCEEECCSSCCS
T ss_pred             -hhhcccccccccccc
Confidence             778888888888753

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=1.2e-14  Score=106.62  Aligned_cols=101  Identities=30%  Similarity=0.424  Sum_probs=87.3

Q ss_pred             CEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccC
Q 024632           98 QSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNN  177 (265)
Q Consensus        98 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N  177 (265)
                      ++||+++|+++ .++ .+..+++|++|++++|.++ .+|+.+..+++|++|++++|.++ .+| .+..+++|+.|++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCC
Confidence            57999999999 665 5899999999999999999 67888999999999999999999 555 4899999999999999


Q ss_pred             CCCCCC-ChhhhccCCCCCCCCCCCCCCCCC
Q 024632          178 KLSGPI-PASLGNRSGNLPKFNASSFEGNKD  207 (265)
Q Consensus       178 ~l~g~~-p~~~~~~~~~l~~l~~~~~~~N~~  207 (265)
                      +++... ...+..    ++.++.+++++|+.
T Consensus        76 ~i~~~~~~~~l~~----~~~L~~L~l~~N~i  102 (124)
T d1dcea3          76 RLQQSAAIQPLVS----CPRLVLLNLQGNSL  102 (124)
T ss_dssp             CCCSSSTTGGGGG----CTTCCEEECTTSGG
T ss_pred             ccCCCCCchhhcC----CCCCCEEECCCCcC
Confidence            998432 234555    88899999999984

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.53  E-value=3e-14  Score=119.81  Aligned_cols=142  Identities=23%  Similarity=0.248  Sum_probs=119.4

Q ss_pred             CCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhC
Q 024632           63 LPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLC  142 (265)
Q Consensus        63 ~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l  142 (265)
                      ++..+..+++++.+++++|.+. .+|..+  +++|+.|++++|...+..+..+..++.++.|++++|.+++..+..+.++
T Consensus       142 ~~~~~~~l~~L~~l~l~~n~l~-~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l  218 (305)
T d1xkua_         142 ENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT  218 (305)
T ss_dssp             CTTGGGGCTTCCEEECCSSCCC-SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred             CccccccccccCccccccCCcc-ccCccc--CCccCEEECCCCcCCCCChhHhhcccccccccccccccccccccccccc
Confidence            4455667889999999999988 566543  6899999999999998888889999999999999999998878889999


Q ss_pred             CcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCCh-hhhc--cCCCCCCCCCCCCCCCCCCC
Q 024632          143 AYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPA-SLGN--RSGNLPKFNASSFEGNKDLY  209 (265)
Q Consensus       143 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~-~~~~--~~~~l~~l~~~~~~~N~~~c  209 (265)
                      ++|++|+|++|.++ .+|..+..+++|+.|++++|+++. ++. .|..  .....+.++.+++++|++-+
T Consensus       219 ~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~-i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         219 PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA-IGSNDFCPPGYNTKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             TTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC-CCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             ccceeeeccccccc-ccccccccccCCCEEECCCCccCc-cChhhccCcchhcccCCCCEEECCCCcCcc
Confidence            99999999999999 788899999999999999999984 443 3322  22346678888999999754

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1e-13  Score=105.62  Aligned_cols=105  Identities=21%  Similarity=0.137  Sum_probs=85.7

Q ss_pred             EEEEeeCCCccccCCccCcCCCCCCEEECcCC-CCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccC
Q 024632           74 YKLSLTNLSLQGSISPYLSNCTNLQSLDLSSN-ALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHD  152 (265)
Q Consensus        74 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  152 (265)
                      +.++.+++++. ..|..+..+++|++|++++| .++...+..|..+++|+.|++++|+++...|..|..+++|++|+|++
T Consensus        11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            44677777777 57788888999999999766 48744456688999999999999999977778899999999999999


Q ss_pred             ccCcccCChhccCCCCCCEEEcccCCCC
Q 024632          153 NLLTGQIPQQLGLLVRLSAFDVSNNKLS  180 (265)
Q Consensus       153 N~l~~~~p~~~~~l~~L~~L~l~~N~l~  180 (265)
                      |+++ .+|.......+|+.|++++|++.
T Consensus        90 N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          90 NALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CCCc-ccChhhhccccccccccCCCccc
Confidence            9999 55555444557999999999985

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.47  E-value=1.7e-13  Score=115.15  Aligned_cols=82  Identities=21%  Similarity=0.242  Sum_probs=58.2

Q ss_pred             ccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCC
Q 024632          120 NLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNA  199 (265)
Q Consensus       120 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~  199 (265)
                      +|+.|++++|..++..+..+..++.+++|++++|.+++..+..+..+++|+.|++++|+++ .+|..+.+    ++.|+.
T Consensus       172 ~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~----l~~L~~  246 (305)
T d1xkua_         172 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD----HKYIQV  246 (305)
T ss_dssp             TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT----CSSCCE
T ss_pred             ccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-cccccccc----ccCCCE
Confidence            3444444444444444555666777778888888887766777778888888888888887 56777666    778888


Q ss_pred             CCCCCCC
Q 024632          200 SSFEGNK  206 (265)
Q Consensus       200 ~~~~~N~  206 (265)
                      +++++|.
T Consensus       247 L~Ls~N~  253 (305)
T d1xkua_         247 VYLHNNN  253 (305)
T ss_dssp             EECCSSC
T ss_pred             EECCCCc
Confidence            8888876

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=4e-14  Score=108.59  Aligned_cols=109  Identities=17%  Similarity=0.166  Sum_probs=91.8

Q ss_pred             CcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCC
Q 024632           91 LSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLS  170 (265)
Q Consensus        91 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  170 (265)
                      +.+...+++|||++|+++ .++..+..+++|+.|++++|.++ .++ .+..+++|++|++++|+++...+..+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccc
Confidence            567788999999999999 67766778999999999999998 454 588899999999999999965555567899999


Q ss_pred             EEEcccCCCCCCCCh--hhhccCCCCCCCCCCCCCCCCC
Q 024632          171 AFDVSNNKLSGPIPA--SLGNRSGNLPKFNASSFEGNKD  207 (265)
Q Consensus       171 ~L~l~~N~l~g~~p~--~~~~~~~~l~~l~~~~~~~N~~  207 (265)
                      .|++++|+++. +++  .+..    ++.|+.+++++|+.
T Consensus        91 ~L~L~~N~i~~-~~~l~~l~~----l~~L~~L~l~~N~i  124 (162)
T d1a9na_          91 ELILTNNSLVE-LGDLDPLAS----LKSLTYLCILRNPV  124 (162)
T ss_dssp             EEECCSCCCCC-GGGGGGGGG----CTTCCEEECCSSGG
T ss_pred             cceeccccccc-ccccccccc----ccccchhhcCCCcc
Confidence            99999999984 443  3444    88999999999974

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.6e-13  Score=104.50  Aligned_cols=111  Identities=16%  Similarity=0.071  Sum_probs=83.0

Q ss_pred             CCCCEEECcCCCCCCCCCCCcccCcccceeccccc-cCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEE
Q 024632           95 TNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSAN-RLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFD  173 (265)
Q Consensus        95 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  173 (265)
                      ...+.++.+++.+. ..|..+..+++|+.|++++| .++...+..|.++++|+.|++++|+++...|..|..+++|+.|+
T Consensus         8 ~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           8 HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            34456778887777 67777888888888888765 47755556788888888888888888866677788888888888


Q ss_pred             cccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCCCC
Q 024632          174 VSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGY  211 (265)
Q Consensus       174 l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~~  211 (265)
                      +++|+++ .+|.....    ...+..+++++|++.|.+
T Consensus        87 Ls~N~l~-~l~~~~~~----~~~l~~L~L~~Np~~C~C  119 (156)
T d2ifga3          87 LSFNALE-SLSWKTVQ----GLSLQELVLSGNPLHCSC  119 (156)
T ss_dssp             CCSSCCS-CCCSTTTC----SCCCCEEECCSSCCCCCG
T ss_pred             ccCCCCc-ccChhhhc----cccccccccCCCcccCCc
Confidence            8888887 55554433    234677788888888765

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.42  E-value=5.4e-13  Score=105.39  Aligned_cols=126  Identities=27%  Similarity=0.402  Sum_probs=103.9

Q ss_pred             eecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCC
Q 024632           67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLN  146 (265)
Q Consensus        67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  146 (265)
                      +..+++|++|++++|.+++ +++ +.++++|++|++++|.+. .++ .+..+++|+.|++++|.+.. + ..+..+++|+
T Consensus        58 l~~l~nL~~L~Ls~N~l~~-~~~-l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~  131 (199)
T d2omxa2          58 VEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTLFNNQITD-I-DPLKNLTNLN  131 (199)
T ss_dssp             GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCS
T ss_pred             cccCCCcCcCccccccccC-ccc-ccCCcccccccccccccc-ccc-cccccccccccccccccccc-c-cccchhhhhH
Confidence            4568999999999999985 333 889999999999999987 455 47889999999999998874 3 3578899999


Q ss_pred             EEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCC
Q 024632          147 VIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK  206 (265)
Q Consensus       147 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~  206 (265)
                      .+++++|++. .++ .+..+++|+.|++++|++++ ++ .+.+    ++.|+.+++++|+
T Consensus       132 ~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~-l~-~l~~----l~~L~~L~ls~N~  183 (199)
T d2omxa2         132 RLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTD-LK-PLAN----LTTLERLDISSNK  183 (199)
T ss_dssp             EEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCC-CG-GGTT----CTTCCEEECCSSC
T ss_pred             Hhhhhhhhhc-ccc-cccccccccccccccccccC-Cc-cccC----CCCCCEEECCCCC
Confidence            9999999997 444 58889999999999999985 33 2444    8889999999986

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.38  E-value=3e-15  Score=118.77  Aligned_cols=114  Identities=23%  Similarity=0.235  Sum_probs=96.1

Q ss_pred             ceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCc
Q 024632           65 GATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAY  144 (265)
Q Consensus        65 ~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  144 (265)
                      ..+..+++|++|+|++|.++ .++ .+..+++|+.|++++|.++ .+|.....+++|++|++++|.++ .+ +.+..+++
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l-~~~~~l~~  116 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SL-SGIEKLVN  116 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CH-HHHHHHHH
T ss_pred             hHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-ccccccccccccccccccccccc-cc-cccccccc
Confidence            44667899999999999998 555 5889999999999999998 67765566778999999999998 44 45888999


Q ss_pred             CCEEEccCccCcccCC--hhccCCCCCCEEEcccCCCCCCCC
Q 024632          145 LNVIDLHDNLLTGQIP--QQLGLLVRLSAFDVSNNKLSGPIP  184 (265)
Q Consensus       145 L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~l~~N~l~g~~p  184 (265)
                      |++|++++|+++ .++  ..+..+++|+.|++++|++....+
T Consensus       117 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  157 (198)
T d1m9la_         117 LRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             SSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSSHHHHHHC
T ss_pred             ccccccccchhc-cccccccccCCCccceeecCCCccccCcc
Confidence            999999999998 444  468899999999999999875433

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.36  E-value=1.2e-12  Score=112.60  Aligned_cols=123  Identities=28%  Similarity=0.322  Sum_probs=63.3

Q ss_pred             CCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEc
Q 024632           71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL  150 (265)
Q Consensus        71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  150 (265)
                      ++++.|++++|.+++..  .+..+++|+.|++++|.+.+ ++ .+..++.++.+++++|.+++ + ..+..+++++.|++
T Consensus       241 ~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~-~~-~~~~~~~l~~l~~~~n~l~~-~-~~~~~~~~l~~L~l  314 (384)
T d2omza2         241 TNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISN-IS-PLAGLTALTNLELNENQLED-I-SPISNLKNLTYLTL  314 (384)
T ss_dssp             TTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCSC-C-GGGGGCTTCSEEEC
T ss_pred             cccchhccccCccCCCC--cccccccCCEeeccCcccCC-CC-cccccccccccccccccccc-c-cccchhcccCeEEC
Confidence            34444444444444211  13444444444444444442 11 12223333333333333332 1 23555667777777


Q ss_pred             cCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCC
Q 024632          151 HDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD  207 (265)
Q Consensus       151 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~  207 (265)
                      ++|++++. + .+..+++|+.|++++|++++ +| .+.+    +++|+.+++++|..
T Consensus       315 s~n~l~~l-~-~l~~l~~L~~L~L~~n~l~~-l~-~l~~----l~~L~~L~l~~N~l  363 (384)
T d2omza2         315 YFNNISDI-S-PVSSLTKLQRLFFANNKVSD-VS-SLAN----LTNINWLSAGHNQI  363 (384)
T ss_dssp             CSSCCSCC-G-GGGGCTTCCEEECCSSCCCC-CG-GGGG----CTTCCEEECCSSCC
T ss_pred             CCCCCCCC-c-ccccCCCCCEEECCCCCCCC-Ch-hHcC----CCCCCEEECCCCcC
Confidence            77777743 3 26667777777777777763 33 4554    66777777777753

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.35  E-value=3e-12  Score=101.93  Aligned_cols=127  Identities=27%  Similarity=0.300  Sum_probs=102.2

Q ss_pred             eecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCC
Q 024632           67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLN  146 (265)
Q Consensus        67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  146 (265)
                      +..+++|++|++++|.+++ ++ .+..+++|++|++++|+++ .+| .+..+++|+.|++++|.+. .+ ..+..++.++
T Consensus        64 l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~~~~~-~~-~~l~~l~~l~  137 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLE  137 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTTSCCC-CC-GGGGGCTTCC
T ss_pred             HhhCCCCCEEeCCCccccC-cc-ccccCcccccccccccccc-ccc-ccccccccccccccccccc-cc-cccccccccc
Confidence            4568899999999999985 44 3688999999999999998 455 5788999999999999887 34 4578888999


Q ss_pred             EEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCC
Q 024632          147 VIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD  207 (265)
Q Consensus       147 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~  207 (265)
                      .+++++|.+++  +..+..+++|+.+++++|++++ +++ +.+    +++++.+++++|..
T Consensus       138 ~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~~-l~~----l~~L~~L~Ls~N~i  190 (210)
T d1h6ta2         138 SLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IVP-LAG----LTKLQNLYLSKNHI  190 (210)
T ss_dssp             EEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CGG-GTT----CTTCCEEECCSSCC
T ss_pred             ccccccccccc--cccccccccccccccccccccc-ccc-ccC----CCCCCEEECCCCCC
Confidence            99999999874  2346778899999999999985 433 444    78888889988863

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.33  E-value=7.6e-12  Score=98.64  Aligned_cols=118  Identities=31%  Similarity=0.437  Sum_probs=97.6

Q ss_pred             eecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCC
Q 024632           67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLN  146 (265)
Q Consensus        67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  146 (265)
                      ++++++|++|++++|.+. .++ .+.++++|+.|++++|.+.. + ..+..+++|+.|++++|++. .++ .+..+++|+
T Consensus        80 l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~n~l~-~~~-~l~~~~~L~  153 (199)
T d2omxa2          80 LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTLFNNQITD-I-DPLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQ  153 (199)
T ss_dssp             GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCS
T ss_pred             ccCCcccccccccccccc-ccc-cccccccccccccccccccc-c-cccchhhhhHHhhhhhhhhc-ccc-ccccccccc
Confidence            667899999999999987 444 48899999999999999873 3 35788999999999999998 444 588999999


Q ss_pred             EEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCC
Q 024632          147 VIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFN  198 (265)
Q Consensus       147 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~  198 (265)
                      .|++.+|++++ ++ .++++++|+.|++++|++++ +| .+.+    +++|+
T Consensus       154 ~L~l~~n~l~~-l~-~l~~l~~L~~L~ls~N~i~~-i~-~l~~----L~~L~  197 (199)
T d2omxa2         154 QLNFSSNQVTD-LK-PLANLTTLERLDISSNKVSD-IS-VLAK----LTNLE  197 (199)
T ss_dssp             EEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-CG-GGGG----CTTCS
T ss_pred             ccccccccccC-Cc-cccCCCCCCEEECCCCCCCC-Cc-cccC----CCCCC
Confidence            99999999994 44 38899999999999999984 44 3544    55554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.33  E-value=3.2e-12  Score=101.70  Aligned_cols=123  Identities=25%  Similarity=0.329  Sum_probs=102.5

Q ss_pred             eecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCC
Q 024632           67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLN  146 (265)
Q Consensus        67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  146 (265)
                      ++.+++|++|++++|++++ +| .+..+++|+.|++++|.+. .++ .+..+++++.+++++|.+++  +..+..+++|+
T Consensus        86 ~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~-~~~-~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~  159 (210)
T d1h6ta2          86 LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKITD--ITVLSRLTKLD  159 (210)
T ss_dssp             GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCC-CCG-GGGGCTTCCEEECCSSCCCC--CGGGGGCTTCS
T ss_pred             cccCccccccccccccccc-cc-ccccccccccccccccccc-ccc-cccccccccccccccccccc--ccccccccccc
Confidence            4568999999999999984 55 4888999999999999987 443 67889999999999999984  34577899999


Q ss_pred             EEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCC
Q 024632          147 VIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFE  203 (265)
Q Consensus       147 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~  203 (265)
                      ++++++|++++ ++. +.++++|+.|++++|+++ .+| .+.+    +++|+.++++
T Consensus       160 ~l~l~~n~l~~-i~~-l~~l~~L~~L~Ls~N~i~-~l~-~l~~----l~~L~~L~Ls  208 (210)
T d1h6ta2         160 TLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHIS-DLR-ALAG----LKNLDVLELF  208 (210)
T ss_dssp             EEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-BCG-GGTT----CTTCSEEEEE
T ss_pred             ccccccccccc-ccc-ccCCCCCCEEECCCCCCC-CCh-hhcC----CCCCCEEEcc
Confidence            99999999984 443 889999999999999998 455 4555    7777777664

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.25  E-value=5.4e-14  Score=111.35  Aligned_cols=112  Identities=25%  Similarity=0.310  Sum_probs=93.9

Q ss_pred             cCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccC
Q 024632           86 SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGL  165 (265)
Q Consensus        86 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  165 (265)
                      .++..+..+++|++|+|++|+++ .++ .+..+++|+.|++++|.++ .+|.....+++|++|++++|+++. ++ .+..
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l~-~~~~  113 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEK  113 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-HH-HHHH
T ss_pred             hhhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccccccccccccccccccccccc-cc-cccc
Confidence            45667888999999999999999 565 5889999999999999998 677766777889999999999994 43 4778


Q ss_pred             CCCCCEEEcccCCCCCCCC--hhhhccCCCCCCCCCCCCCCCCC
Q 024632          166 LVRLSAFDVSNNKLSGPIP--ASLGNRSGNLPKFNASSFEGNKD  207 (265)
Q Consensus       166 l~~L~~L~l~~N~l~g~~p--~~~~~~~~~l~~l~~~~~~~N~~  207 (265)
                      +++|+.|++++|+++. ++  ..+..    ++.|+.+++++|+.
T Consensus       114 l~~L~~L~L~~N~i~~-~~~~~~l~~----l~~L~~L~L~~N~l  152 (198)
T d1m9la_         114 LVNLRVLYMSNNKITN-WGEIDKLAA----LDKLEDLLLAGNPL  152 (198)
T ss_dssp             HHHSSEEEESEEECCC-HHHHHHHTT----TTTCSEEEECSSHH
T ss_pred             cccccccccccchhcc-ccccccccC----CCccceeecCCCcc
Confidence            8999999999999984 33  23444    88999999999973

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.21  E-value=5e-11  Score=95.58  Aligned_cols=131  Identities=21%  Similarity=0.365  Sum_probs=97.3

Q ss_pred             CCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCc------
Q 024632           63 LPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIP------  136 (265)
Q Consensus        63 ~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p------  136 (265)
                      +++ +..+++|++|++++|.+++..  .+..+++++.+++++|.++ .++ .+..+++|++++++++...+..+      
T Consensus        56 l~~-l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~-~i~-~l~~l~~L~~l~l~~~~~~~~~~~~~~~~  130 (227)
T d1h6ua2          56 IEG-VQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQITDVTPLAGLSN  130 (227)
T ss_dssp             CTT-GGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEECTTSCCCCCGGGTTCTT
T ss_pred             chh-HhcCCCCcEeecCCceeeccc--ccccccccccccccccccc-ccc-cccccccccccccccccccccchhccccc
Confidence            443 557899999999999888533  2788888899999888887 444 46677888888887777653211      


Q ss_pred             --------------hHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCC
Q 024632          137 --------------PQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSF  202 (265)
Q Consensus       137 --------------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~  202 (265)
                                    ..+..+++|++|++++|.+++. + .+.++++|+.|++++|++++ +|. +.+    +++|+.+++
T Consensus       131 ~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L~Ls~n~l~~-l~~-l~~----l~~L~~L~L  202 (227)
T d1h6ua2         131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL-T-PLANLSKLTTLKADDNKISD-ISP-LAS----LPNLIEVHL  202 (227)
T ss_dssp             CCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CGG-GGG----CTTCCEEEC
T ss_pred             hhhhhchhhhhchhhhhccccccccccccccccccc-h-hhcccccceecccCCCccCC-Chh-hcC----CCCCCEEEC
Confidence                          2345677888999988888743 2 37888999999999999885 443 555    788888899


Q ss_pred             CCCC
Q 024632          203 EGNK  206 (265)
Q Consensus       203 ~~N~  206 (265)
                      ++|.
T Consensus       203 s~N~  206 (227)
T d1h6ua2         203 KNNQ  206 (227)
T ss_dssp             TTSC
T ss_pred             cCCc
Confidence            8886

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.16  E-value=9.8e-11  Score=100.30  Aligned_cols=123  Identities=29%  Similarity=0.369  Sum_probs=81.1

Q ss_pred             CCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEE
Q 024632           70 NGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVID  149 (265)
Q Consensus        70 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  149 (265)
                      .+++++|++++|.++. + +.+..+++|+.+++++|.+++..  .+..+++|++|++++|.+++. + .+..++.++.++
T Consensus       218 ~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~-~-~~~~~~~l~~l~  291 (384)
T d2omza2         218 LTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNI-S-PLAGLTALTNLE  291 (384)
T ss_dssp             CTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCSEEE
T ss_pred             cCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCC-C-cccccccccccc
Confidence            3556666666666652 2 24556666666666666666322  255566666666666666632 2 255566666677


Q ss_pred             ccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCC
Q 024632          150 LHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK  206 (265)
Q Consensus       150 Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~  206 (265)
                      ++.|.+++ + ..+..+++++.|++++|++++..|  +..    ++.|+.+++++|.
T Consensus       292 ~~~n~l~~-~-~~~~~~~~l~~L~ls~n~l~~l~~--l~~----l~~L~~L~L~~n~  340 (384)
T d2omza2         292 LNENQLED-I-SPISNLKNLTYLTLYFNNISDISP--VSS----LTKLQRLFFANNK  340 (384)
T ss_dssp             CCSSCCSC-C-GGGGGCTTCSEEECCSSCCSCCGG--GGG----CTTCCEEECCSSC
T ss_pred             cccccccc-c-cccchhcccCeEECCCCCCCCCcc--ccc----CCCCCEEECCCCC
Confidence            77776663 2 347778999999999999996432  555    8889999999986

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.09  E-value=2.4e-10  Score=91.52  Aligned_cols=125  Identities=23%  Similarity=0.330  Sum_probs=90.3

Q ss_pred             eecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCC--------------------CCCcccCcccceecc
Q 024632           67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSI--------------------PADLQYLVNLAVLNL  126 (265)
Q Consensus        67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~--------------------p~~l~~l~~L~~L~L  126 (265)
                      +..+++++++++++|.++ .++ .+..+++|+.++++++...+..                    ...+..+++|+.|++
T Consensus        81 l~~l~~l~~l~~~~n~~~-~i~-~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l  158 (227)
T d1h6ua2          81 LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSI  158 (227)
T ss_dssp             GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEEC
T ss_pred             cccccccccccccccccc-ccc-cccccccccccccccccccccchhccccchhhhhchhhhhchhhhhccccccccccc
Confidence            445677777777777766 333 3566677777777666544211                    123456788999999


Q ss_pred             ccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCC
Q 024632          127 SANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFE  203 (265)
Q Consensus       127 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~  203 (265)
                      ++|.++..  ..+.++++|+.|++++|++++ +|. +..+++|++|++++|++++ +|. +.+    ++.|..++++
T Consensus       159 ~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~Ls~N~lt~-i~~-l~~----l~~L~~L~ls  225 (227)
T d1h6ua2         159 GNAQVSDL--TPLANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISD-VSP-LAN----TSNLFIVTLT  225 (227)
T ss_dssp             CSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCB-CGG-GTT----CTTCCEEEEE
T ss_pred             cccccccc--hhhcccccceecccCCCccCC-Chh-hcCCCCCCEEECcCCcCCC-Ccc-ccc----CCCCCEEEee
Confidence            99999743  348899999999999999984 554 8899999999999999985 443 444    7777777664

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.2e-09  Score=87.87  Aligned_cols=113  Identities=17%  Similarity=0.127  Sum_probs=56.9

Q ss_pred             eeecCCCeEEEEeeC-CCccccCCccCcCCCCCCEEECcCCCCCCC-------------------------CCCCcccC-
Q 024632           66 ATCNNGRIYKLSLTN-LSLQGSISPYLSNCTNLQSLDLSSNALTGS-------------------------IPADLQYL-  118 (265)
Q Consensus        66 ~~~~~~~l~~L~L~~-n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-------------------------~p~~l~~l-  118 (265)
                      .+..++.++++++.. |.+....+..+.++++|+++++++|.+...                         .+..+..+ 
T Consensus        73 ~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~  152 (242)
T d1xwdc1          73 VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS  152 (242)
T ss_dssp             SEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSB
T ss_pred             ccccccccccccccccccccccccccccccccccccccchhhhccccccccccccccccccccccccccccccccccccc
Confidence            344455555555442 344444444455556666666665555421                         11222222 


Q ss_pred             cccceeccccccCCCCCchHhhhCCcCCEE-EccCccCcccCC-hhccCCCCCCEEEcccCCCC
Q 024632          119 VNLAVLNLSANRLAGEIPPQLTLCAYLNVI-DLHDNLLTGQIP-QQLGLLVRLSAFDVSNNKLS  180 (265)
Q Consensus       119 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L-~Ls~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~  180 (265)
                      ..++.|++++|+++. ++.......+++.+ ++++|+++ .+| ..|.++++|+.|++++|+++
T Consensus       153 ~~l~~L~l~~n~l~~-i~~~~~~~~~l~~~~~l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~  214 (242)
T d1xwdc1         153 FESVILWLNKNGIQE-IHNCAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH  214 (242)
T ss_dssp             SSCEEEECCSSCCCE-ECTTTTTTCCEEEEECTTCTTCC-CCCTTTTTTSCCCSEEECTTSCCC
T ss_pred             ccceeeecccccccc-cccccccchhhhccccccccccc-cccHHHhcCCCCCCEEECCCCcCC
Confidence            245556666666652 33333333443333 34556666 343 34566677777777777776

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.86  E-value=8.1e-09  Score=86.71  Aligned_cols=97  Identities=30%  Similarity=0.369  Sum_probs=69.0

Q ss_pred             CCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEc
Q 024632           71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL  150 (265)
Q Consensus        71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  150 (265)
                      .+++.|+|++++++ .+|+.   .++|++|++++|+++ .+|+.+   .+|+.|++++|+++ .++..   .+.|++|++
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L  105 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSDL---PPLLEYLGV  105 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCSC---CTTCCEEEC
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhhhh---ccccccccc
Confidence            35677888888887 56653   467888888888887 677543   46777888888776 44421   135888888


Q ss_pred             cCccCcccCChhccCCCCCCEEEcccCCCCC
Q 024632          151 HDNLLTGQIPQQLGLLVRLSAFDVSNNKLSG  181 (265)
Q Consensus       151 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g  181 (265)
                      ++|.+. .+|. ++.+++|+.|++++|.+..
T Consensus       106 ~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~  134 (353)
T d1jl5a_         106 SNNQLE-KLPE-LQNSSFLKIIDVDNNSLKK  134 (353)
T ss_dssp             CSSCCS-SCCC-CTTCTTCCEEECCSSCCSC
T ss_pred             cccccc-cccc-hhhhccceeeccccccccc
Confidence            888887 5664 5677888888888887763

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=3e-09  Score=85.49  Aligned_cols=111  Identities=14%  Similarity=0.093  Sum_probs=75.2

Q ss_pred             CCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCC-CCcccCcccceecccc-ccCCCCCchHhhhCCcCCEE
Q 024632           71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIP-ADLQYLVNLAVLNLSA-NRLAGEIPPQLTLCAYLNVI  148 (265)
Q Consensus        71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L  148 (265)
                      +++++|++++|.++...+..|.++++|++|++++|.+...++ ..|..++.++++++.. |.+....+..+.++++|+++
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            367888888888874444467888888888888888765444 3467778888887654 56665666667788888888


Q ss_pred             EccCccCcccCC-hhccCCCCCCEEEcccCCCCC
Q 024632          149 DLHDNLLTGQIP-QQLGLLVRLSAFDVSNNKLSG  181 (265)
Q Consensus       149 ~Ls~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~g  181 (265)
                      ++++|.+....+ ..+..+..+..+..+++.+..
T Consensus       109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~  142 (242)
T d1xwdc1         109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT  142 (242)
T ss_dssp             EEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCE
T ss_pred             ccchhhhccccccccccccccccccccccccccc
Confidence            888888863322 123344555555666666653

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=3.3e-09  Score=87.76  Aligned_cols=61  Identities=30%  Similarity=0.307  Sum_probs=33.2

Q ss_pred             cCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCC-CCCCC-CCCCcccCcccceeccccc
Q 024632           69 NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSN-ALTGS-IPADLQYLVNLAVLNLSAN  129 (265)
Q Consensus        69 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~-~p~~l~~l~~L~~L~Ls~N  129 (265)
                      ..++|++|+++++.+....+..+..+++|++|+++++ .++.. +..-...+++|++|+++++
T Consensus        69 ~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c  131 (284)
T d2astb2          69 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC  131 (284)
T ss_dssp             TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred             hCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccc
Confidence            3466667777766665555555666666777776663 33311 1111234556666666653

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.57  E-value=1.3e-07  Score=79.10  Aligned_cols=95  Identities=26%  Similarity=0.315  Sum_probs=74.3

Q ss_pred             CCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEc
Q 024632           95 TNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDV  174 (265)
Q Consensus        95 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l  174 (265)
                      .++++|||++|.++ .+|+.   +++|++|++++|+++ .+|..   +.+|+.|++++|+++ .++..   .+.|++|++
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L  105 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGV  105 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEEEC
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhhh---ccccccccc
Confidence            36889999999998 78864   578999999999999 77865   457999999999998 55531   246999999


Q ss_pred             ccCCCCCCCChhhhccCCCCCCCCCCCCCCCCC
Q 024632          175 SNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD  207 (265)
Q Consensus       175 ~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~  207 (265)
                      ++|.+. .+|. ++.    ++.++.+++.+|..
T Consensus       106 ~~n~l~-~lp~-~~~----l~~L~~L~l~~~~~  132 (353)
T d1jl5a_         106 SNNQLE-KLPE-LQN----SSFLKIIDVDNNSL  132 (353)
T ss_dssp             CSSCCS-SCCC-CTT----CTTCCEEECCSSCC
T ss_pred             cccccc-cccc-hhh----hccceeeccccccc
Confidence            999998 5664 333    66677777766653

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=6.1e-09  Score=86.11  Aligned_cols=133  Identities=23%  Similarity=0.253  Sum_probs=91.2

Q ss_pred             CCCeEEEEeeCCCcccc-CCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccc-cCCCC-CchHhhhCCcCC
Q 024632           70 NGRIYKLSLTNLSLQGS-ISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSAN-RLAGE-IPPQLTLCAYLN  146 (265)
Q Consensus        70 ~~~l~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~~L~  146 (265)
                      ..++++|+++++.+... ++..+..+++|++|+++++.+++..+..+.++++|++|+++++ .++.. +..-...+++|+
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            45789999999988643 4455788999999999999988777777888999999999995 55521 122235678888


Q ss_pred             EEEccCc-cCccc-----------------------------CChhccCCCCCCEEEcccC-CCCCCCChhhhccCCCCC
Q 024632          147 VIDLHDN-LLTGQ-----------------------------IPQQLGLLVRLSAFDVSNN-KLSGPIPASLGNRSGNLP  195 (265)
Q Consensus       147 ~L~Ls~N-~l~~~-----------------------------~p~~~~~l~~L~~L~l~~N-~l~g~~p~~~~~~~~~l~  195 (265)
                      +|+++++ .++..                             +.....++++|++|++++| .+++..+..+.+    ++
T Consensus       125 ~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~----~~  200 (284)
T d2astb2         125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ----LN  200 (284)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG----CT
T ss_pred             ccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcc----cC
Confidence            8888875 23210                             0001234567777777764 456555555554    66


Q ss_pred             CCCCCCCCCCC
Q 024632          196 KFNASSFEGNK  206 (265)
Q Consensus       196 ~l~~~~~~~N~  206 (265)
                      .++.++++++.
T Consensus       201 ~L~~L~L~~C~  211 (284)
T d2astb2         201 YLQHLSLSRCY  211 (284)
T ss_dssp             TCCEEECTTCT
T ss_pred             cCCEEECCCCC
Confidence            67777776644

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=1.9e-09  Score=81.83  Aligned_cols=40  Identities=43%  Similarity=0.417  Sum_probs=17.9

Q ss_pred             CCCCCCEEECcCCCCCCCC--CCCcccCcccceeccccccCC
Q 024632           93 NCTNLQSLDLSSNALTGSI--PADLQYLVNLAVLNLSANRLA  132 (265)
Q Consensus        93 ~l~~L~~L~Ls~N~l~~~~--p~~l~~l~~L~~L~Ls~N~l~  132 (265)
                      .+++|++|+|++|+++..-  +..+..+++|+.|++++|.++
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~  104 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK  104 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc
Confidence            3445555555555554211  122334445555555555544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=6.4e-09  Score=90.26  Aligned_cols=110  Identities=25%  Similarity=0.260  Sum_probs=77.9

Q ss_pred             CeEEEEeeCCCcccc-CCccCcCCCCCCEEECcCCCCCC----CCCCCcccCcccceeccccccCCCCCchHhh-----h
Q 024632           72 RIYKLSLTNLSLQGS-ISPYLSNCTNLQSLDLSSNALTG----SIPADLQYLVNLAVLNLSANRLAGEIPPQLT-----L  141 (265)
Q Consensus        72 ~l~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-----~  141 (265)
                      +|++||+++|++++. +..-+..+++++.|+|++|.++.    .+...+...++|++|||++|.++..--..+.     .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            588999999998742 12334557888999999998762    2234456788899999999987521111222     1


Q ss_pred             CCcCCEEEccCccCccc----CChhccCCCCCCEEEcccCCCCC
Q 024632          142 CAYLNVIDLHDNLLTGQ----IPQQLGLLVRLSAFDVSNNKLSG  181 (265)
Q Consensus       142 l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~g  181 (265)
                      ..+|++|++++|++++.    ++..+..+++|+.|++++|.++.
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            24799999999998743    45567788899999999998763

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.41  E-value=6.6e-09  Score=87.97  Aligned_cols=116  Identities=18%  Similarity=0.254  Sum_probs=57.6

Q ss_pred             cCCCCCCEEECcCCCCCCC-----CCCCcccCcccceeccccccCCCC----CchHhhhCCcCCEEEccCccCcccCC--
Q 024632           92 SNCTNLQSLDLSSNALTGS-----IPADLQYLVNLAVLNLSANRLAGE----IPPQLTLCAYLNVIDLHDNLLTGQIP--  160 (265)
Q Consensus        92 ~~l~~L~~L~Ls~N~l~~~-----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p--  160 (265)
                      ...+.|+.|++++|.+...     +...+...++|+.|++++|.++..    +...+..+++|++|++++|.+++.-.  
T Consensus       183 ~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~  262 (344)
T d2ca6a1         183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA  262 (344)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             hhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHH
Confidence            3445566666666665421     223344556666666666665421    22334455666666666666653211  


Q ss_pred             --hhcc--CCCCCCEEEcccCCCCCCCChhhhccC-CCCCCCCCCCCCCCCC
Q 024632          161 --QQLG--LLVRLSAFDVSNNKLSGPIPASLGNRS-GNLPKFNASSFEGNKD  207 (265)
Q Consensus       161 --~~~~--~l~~L~~L~l~~N~l~g~~p~~~~~~~-~~l~~l~~~~~~~N~~  207 (265)
                        ..+.  ..+.|+.|++++|+++..--..+.... ...+.++.+++++|.+
T Consensus       263 l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~  314 (344)
T d2ca6a1         263 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  314 (344)
T ss_dssp             HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             HHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence              1222  124566666666666532111111110 1244555666666654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=5.7e-08  Score=73.38  Aligned_cols=90  Identities=20%  Similarity=0.170  Sum_probs=63.3

Q ss_pred             CCCcccCcccceeccccccCCCCC--chHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChh---
Q 024632          112 PADLQYLVNLAVLNLSANRLAGEI--PPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPAS---  186 (265)
Q Consensus       112 p~~l~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~---  186 (265)
                      +.....+++|++|+|++|+++..-  +..+..+++|+.|++++|.++..-+-.+....+|+.+++++|+++......   
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y  137 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY  137 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhH
Confidence            333456889999999999998532  456788999999999999999433323444567999999999998665432   


Q ss_pred             hhccCCCCCCCCCCC
Q 024632          187 LGNRSGNLPKFNASS  201 (265)
Q Consensus       187 ~~~~~~~l~~l~~~~  201 (265)
                      .......+|.++.++
T Consensus       138 ~~~i~~~~P~L~~LD  152 (162)
T d1koha1         138 ISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHTTSTTCCEET
T ss_pred             HHHHHHHCCCCCEEC
Confidence            111223477776654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.27  E-value=2.1e-08  Score=84.74  Aligned_cols=38  Identities=24%  Similarity=0.358  Sum_probs=21.2

Q ss_pred             CCCeEEEEeeCCCcccc----CCccCcCCCCCCEEECcCCCC
Q 024632           70 NGRIYKLSLTNLSLQGS----ISPYLSNCTNLQSLDLSSNAL  107 (265)
Q Consensus        70 ~~~l~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l  107 (265)
                      .++|+.|+|++|.+...    +...+...++|++|++++|.+
T Consensus        92 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l  133 (344)
T d2ca6a1          92 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL  133 (344)
T ss_dssp             CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred             CCCcccccccccccccccccchhhhhcccccchheecccccc
Confidence            45666677766666532    222334456666666666654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=1.9e-08  Score=87.14  Aligned_cols=139  Identities=22%  Similarity=0.093  Sum_probs=90.2

Q ss_pred             cCCCeEEEEeeCCCccccCC----cc-CcCCCCCCEEECcCCCCCCCCCCC----cccCcccceeccccccCCCC----C
Q 024632           69 NNGRIYKLSLTNLSLQGSIS----PY-LSNCTNLQSLDLSSNALTGSIPAD----LQYLVNLAVLNLSANRLAGE----I  135 (265)
Q Consensus        69 ~~~~l~~L~L~~n~l~~~~p----~~-l~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~L~Ls~N~l~~~----~  135 (265)
                      ..+.++.+++++|.+.....    .. ......|+.+++++|.++......    +....+|++|+|++|.+++.    +
T Consensus       281 ~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l  360 (460)
T d1z7xw1         281 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL  360 (460)
T ss_dssp             HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHH
T ss_pred             ccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchh
Confidence            46788999999998863211    11 123457899999999877432222    23456899999999988632    2


Q ss_pred             chHhh-hCCcCCEEEccCccCccc----CChhccCCCCCCEEEcccCCCCCCCChhhhcc-CCCCCCCCCCCCCCCCC
Q 024632          136 PPQLT-LCAYLNVIDLHDNLLTGQ----IPQQLGLLVRLSAFDVSNNKLSGPIPASLGNR-SGNLPKFNASSFEGNKD  207 (265)
Q Consensus       136 p~~~~-~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~-~~~l~~l~~~~~~~N~~  207 (265)
                      +..+. ..+.|++|++++|+++..    +++.+...++|++|++++|+++......+... ......++.+++.+|.+
T Consensus       361 ~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~  438 (460)
T d1z7xw1         361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW  438 (460)
T ss_dssp             HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred             hhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCC
Confidence            23332 346799999999999742    44556677899999999999875433333221 11123466677777664

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.74  E-value=3.1e-06  Score=63.84  Aligned_cols=62  Identities=15%  Similarity=0.271  Sum_probs=31.1

Q ss_pred             cccceeccccccCCC----CCchHhhhCCcCCEEEccCccCccc----CChhccCCCCCCEEEcccCCCC
Q 024632          119 VNLAVLNLSANRLAG----EIPPQLTLCAYLNVIDLHDNLLTGQ----IPQQLGLLVRLSAFDVSNNKLS  180 (265)
Q Consensus       119 ~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~  180 (265)
                      ++|+.|++++|.+..    .+...+...+.|++|++++|.++..    +-..+...++|+.|++++|.+.
T Consensus        44 ~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          44 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSC
T ss_pred             CccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCC
Confidence            444444444444431    1222334445566666666666531    1223445566777777766554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.42  E-value=3.5e-05  Score=57.75  Aligned_cols=109  Identities=13%  Similarity=0.161  Sum_probs=70.9

Q ss_pred             cCCCeEEEEeeCC-Ccccc----CCccCcCCCCCCEEECcCCCCCCC----CCCCcccCcccceeccccccCCCCC----
Q 024632           69 NNGRIYKLSLTNL-SLQGS----ISPYLSNCTNLQSLDLSSNALTGS----IPADLQYLVNLAVLNLSANRLAGEI----  135 (265)
Q Consensus        69 ~~~~l~~L~L~~n-~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~----  135 (265)
                      +.++|++|+|+++ .+...    +-..+...+.|+.|++++|.+...    +.+.+...+.|+.|++++|.++..-    
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            4578899999874 45421    233466778899999999988632    2223445678999999999887321    


Q ss_pred             chHhhhCCcCCEEEccCccCccc-------CChhccCCCCCCEEEcccC
Q 024632          136 PPQLTLCAYLNVIDLHDNLLTGQ-------IPQQLGLLVRLSAFDVSNN  177 (265)
Q Consensus       136 p~~~~~l~~L~~L~Ls~N~l~~~-------~p~~~~~l~~L~~L~l~~N  177 (265)
                      -..+...++|++|++++|.+...       +...+...++|+.|+++.+
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            12344557799999998876521       2233444566777776554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.03  E-value=2.6e-05  Score=58.31  Aligned_cols=63  Identities=14%  Similarity=0.225  Sum_probs=28.9

Q ss_pred             CCCeEEEEeeC-CCcccc----CCccCcCCCCCCEEECcCCCCCCCC----CCCcccCcccceeccccccCC
Q 024632           70 NGRIYKLSLTN-LSLQGS----ISPYLSNCTNLQSLDLSSNALTGSI----PADLQYLVNLAVLNLSANRLA  132 (265)
Q Consensus        70 ~~~l~~L~L~~-n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~Ls~N~l~  132 (265)
                      .+.|++|++++ +.++..    +-..+...++|++|++++|.++...    -..+...++++.+++++|.+.
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            45566666665 334311    2223445556666666666554211    111223345555555555443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.42  E-value=0.0001  Score=54.90  Aligned_cols=115  Identities=11%  Similarity=0.190  Sum_probs=71.1

Q ss_pred             CcCCCCCCEEECcC-CCCCCC----CCCCcccCcccceeccccccCCCC----CchHhhhCCcCCEEEccCccCccc---
Q 024632           91 LSNCTNLQSLDLSS-NALTGS----IPADLQYLVNLAVLNLSANRLAGE----IPPQLTLCAYLNVIDLHDNLLTGQ---  158 (265)
Q Consensus        91 l~~l~~L~~L~Ls~-N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~---  158 (265)
                      ..+.+.|++|++++ +.++..    +-..+...++|+.|++++|.++..    +-..+...++++.+++++|.+...   
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            34568899999997 456421    122345678999999999988632    122345678999999999988742   


Q ss_pred             -CChhccCCCCCCEEEcc--cCCCCCCCChhhhccCCCCCCCCCCCCCCC
Q 024632          159 -IPQQLGLLVRLSAFDVS--NNKLSGPIPASLGNRSGNLPKFNASSFEGN  205 (265)
Q Consensus       159 -~p~~~~~l~~L~~L~l~--~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N  205 (265)
                       +-..+...++|+.++++  .|.+....-..+.......+.+..+++..+
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence             23456677889876665  556643211222221112455555555443