Citrus Sinensis ID: 024639

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-----
Protein Sequence
MDERGGSFVAVRRISQGLDRGNTCHSTSAEVVAGSAAWLGRGLSCVCAQRRESDPRPSFDLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLARNFPSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERELLLEDVTRLEDLPSYSLLSR
Secondary Structure (PSIPRED)
ccccccccHHHHHHHccccccccccccccHHHccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccccHHHHHHccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEccccccccccccccccEEEEccHHHHHHcHHHHHHcccccccHHcccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccHcccccHHHHcc
Coil and Loop (DISEMBL)
MDERGGSFVAVRRIsqgldrgntchstsAEVVAGSAAWLGRGLSCVcaqrresdprpsfdltpAQEECLQRLQLRIdvaydssiPEHREALRALWNAAFPDEELRDLISEQWKemgwqgkdpstdfrgggfisLENLLYLARNFPSFQDLLRkqegdrsvweypfavagVNITFMLIQMLdleavkprtMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERELLLEDVtrledlpsysllsr
Flexible Loop (DISEMBL)
MDERGGSFVAVRrisqgldrgntchSTSAEVVAGSAAWLGRGLSCVCAQRRESDprpsfdltpAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLARNFPSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLEREllledvtrledlpsysllsr
Low Complexity Region (SEG)
MDERGGSFVAVRRISQGLDRGNTCHSTSAEVVAGSAAWLGRGLSCVCAQRRESDPRPSFDLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLARNFPSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTrrqlerellleDVTRLEDLPSYSLLSR
Disordered region (IsUnstruct)
********VAVRRISQGLDRGNTCHSTSAEVVAGSAAWLGRGLSCVCA******************ECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLARNFPSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERELLLEDV**************
Disordered Region (DISOPRED)
******S***VRRISQGLDRGNT*******VVAGSAAWLGRGLSCV*************DLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAF************WKEMGWQGKDPSTDFRGGGFISLENLLYLARNFPSFQDLLRK********EYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERELLLEDVTRLEDLPSYSLLSR
Disordered Region (DISEMBL)
MDERGGSFVAVRRISQGLDRGNTCHSTSAEVVAGSAAWLGRGLSCVCAQR********FDLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLARNFPSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERELLLEDVTRLEDLPSYSLLSR
Disordered Region (DISPRO)
*****GSFVAVRRISQGLDRGNTCHSTSAEVVAGSAAWLGRGLSCVCAQRRESDPRPSFDLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLARNFPSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERELLLEDVTRLEDLPSYSLLSR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDERGGSFVAVRRISQGLDRGNTCHSTSAEVVAGSAAWLGRGLSCVCAQRRESDPRPSFDLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLARNFPSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERELLLEDVTRLEDLPSYSLLSR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	265	2.2.26 [Sep-21-2011]
Q54YW1	977	ELMO domain-containing pr	yes	no	0.701	0.190	0.313	3e-24
Q54RS7	618	ELMO domain-containing pr	no	no	0.664	0.284	0.329	3e-23
Q54UP9	1267	Ankyrin repeat and ELMO d	no	no	0.6	0.125	0.306	8e-18
Q54VR8	284	ELMO domain-containing pr	no	no	0.566	0.528	0.318	2e-17
Q08DZ3	293	ELMO domain-containing pr	yes	no	0.739	0.668	0.311	6e-17
Q8IZ81	293	ELMO domain-containing pr	yes	no	0.509	0.460	0.353	7e-17
Q499U2	720	Engulfment and cell motil	yes	no	0.675	0.248	0.282	3e-15
Q8BGF6	293	ELMO domain-containing pr	yes	no	0.550	0.498	0.352	3e-15
A6QR40	652	Engulfment and cell motil	no	no	0.664	0.269	0.276	4e-15
Q0IIE6	326	ELMO domain-containing pr	no	no	0.618	0.503	0.318	4e-15

>sp|Q54YW1|ELMOA_DICDI ELMO domain-containing protein A OS=Dictyostelium discoideum GN=elmoA PE=1 SV=1

 Score =  112 bits (279), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 67/214 (31%), Positives = 101/214 (47%), Gaps = 28/214 (13%)

Query: 65  QEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPST 124
           Q    Q +  R +V ++    EH   L  LW+  +P  +L   +SEQWK+MG+QG DP T
Sbjct: 362 QRHRFQVITNRKNVTFNKESSEHDALLMKLWSLTYPGVKLESRVSEQWKQMGFQGTDPCT 421

Query: 125 DFRGGGFISLENLLYLARNF-PSFQDLLRKQEGDRSVWEYPFAVAGVNITFML---IQML 180
           DFR  G   L+NL+Y A+N+   F+ ++  Q  DR   EYP A AG+ +TF L   I  +
Sbjct: 422 DFRAMGIWGLDNLIYFAQNYNEKFRKIVNSQI-DRKEREYPTATAGIVLTFELYNSIFKM 480

Query: 181 DLEAVKPRTMVGAT---------------FLKFLSENESAFDLLYCITFKLMDHQWLAMR 225
               + P     +                F      +  AF+ +YC TF+++D  W  M 
Sbjct: 481 GTPNLNPYNSTTSNTTSNTTSTTNIDDLPFFPLFFSHPHAFEEVYCTTFQILDSTWDDMN 540

Query: 226 ASYMDFNTVMKSTRRQLERELLLEDVTRLEDLPS 259
            +YM F  +M S +  +        +T LE  P+
Sbjct: 541 GTYMHFQKIMSSVKNLI--------ITALESKPT 566

Functions as a negative regulator of actin polymerization. Modulates actin/myosin II at cortex actinomyosins to prevent excessive F-actin polymerization around the cell periphery, thereby maintaining proper cell shape during phagocytosis and chemotaxis.
Dictyostelium discoideum (taxid: 44689)

>sp|Q54RS7|ELMOC_DICDI ELMO domain-containing protein C OS=Dictyostelium discoideum GN=elmoC PE=4 SV=1

 Score =  108 bits (271), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 63/191 (32%), Positives = 102/191 (53%), Gaps = 15/191 (7%)

Query: 61  LTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGK 120
           +T  Q + ++ L  +    Y+S+ P+H E L+ LW+  +P++E +   S  WK+ G+Q  
Sbjct: 357 VTAKQSQTIKILFQKKSTIYESTNPDHEEYLKHLWSLLYPEQEFQKK-SPLWKKFGFQSD 415

Query: 121 DPSTDFRGGGFISLENLLYLARNFPSFQDLLRKQEGDRSVWEYPFAVAGVNIT---FMLI 177
           DP+ DFRG G + L NL++L ++   +   +  Q+ D     YPFAVAG+NI+   F + 
Sbjct: 416 DPTRDFRGMGIMGLLNLIHLVQHHNDWVQEILAQDRD-----YPFAVAGINISNLIFEVF 470

Query: 178 QMLDLEAVKPRTMVG------ATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDF 231
           Q+ +    +P           A        N+ AF+ LY + F L+DH W+ M A+YM F
Sbjct: 471 QISEDSLQQPWYSSFWSSSYMAMLCSMSRHNDHAFEELYFLIFNLLDHLWIQMNATYMMF 530

Query: 232 NTVMKSTRRQL 242
             V+K  + QL
Sbjct: 531 PLVIKKLKSQL 541

Dictyostelium discoideum (taxid: 44689)

>sp|Q54UP9|ELMOD_DICDI Ankyrin repeat and ELMO domain-containing protein D OS=Dictyostelium discoideum GN=elmoD PE=4 SV=1

 Score = 90.9 bits (224), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 54/176 (30%), Positives = 92/176 (52%), Gaps = 17/176 (9%)

Query: 69  LQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRG 128
           +Q L +     Y+   P H+  L  LW+  FP++  +    E W+ +G+Q KDPS+DFRG
Sbjct: 290 IQGLIMDSKTPYNKDEPSHQRLLETLWSTLFPNQVFQR-SHENWQIIGFQNKDPSSDFRG 348

Query: 129 GGFISLENLLYLARNFPS-FQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKP 187
            G   L++L+YLA+N    F + L  ++ + +   YP+A +G+ +T  L+     E VKP
Sbjct: 349 MGLAGLKHLIYLAQNHKDMFMNPLINRQPEANY--YPYATSGIQVTSFLV-----ECVKP 401

Query: 188 -------RTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMK 236
                    ++G  +   L E+E+A + +YC+  ++    W    A+YM F  V +
Sbjct: 402 INISANHSDVIGQIY-PILFESENALNEIYCVLMEIFGIVWKDWNATYMIFQKVFQ 456

Dictyostelium discoideum (taxid: 44689)

>sp|Q54VR8|ELMOB_DICDI ELMO domain-containing protein B OS=Dictyostelium discoideum GN=elmoB PE=4 SV=1

 Score = 89.7 bits (221), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 83/160 (51%), Gaps = 10/160 (6%)

Query: 78  VAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENL 137
           + YD++  EH  +L  LW A  PD      +S++W  +G+QG DP+TDFRG G + L+NL
Sbjct: 116 IPYDNNNLEHEASLERLWEALLPDVRRSARLSKEWGTLGFQGMDPATDFRGMGILGLDNL 175

Query: 138 LYLARNFPSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLK 197
           +Y +      +D     +   S   YPFA+ G+NIT +++ ++D    K       + L 
Sbjct: 176 IYFSTQHS--EDAREILKNSNSKCCYPFAITGINITALVLNLIDKPHFKIYFFKNGSTL- 232

Query: 198 FLSENESAFDLLYCITFKLMDHQWLAMR-ASYMDFNTVMK 236
                 + F+ LY + F   D  + + +  S M+FNT+ K
Sbjct: 233 ------TQFNELYSLVFISFDRFYQSKKPKSIMEFNTIKK 266

Dictyostelium discoideum (taxid: 44689)

>sp|Q08DZ3|ELMD2_BOVIN ELMO domain-containing protein 2 OS=Bos taurus GN=ELMOD2 PE=1 SV=1

 Score = 88.2 bits (217), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 100/218 (45%), Gaps = 22/218 (10%)

Query: 45  CVCAQRRESDPRPSFD--LTPAQEECLQRL----QLRIDV------AYDSSIPEHREALR 92
           CV    +E +  P  D       + CL ++    QL +DV       YDS   +H + L 
Sbjct: 73  CVEDIMKEKNINPEKDASFKICMKACLLQISGYKQLYLDVESVRKKPYDSDNLQHEKLLI 132

Query: 93  ALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLARNFPS--FQDL 150
            LWN   P ++L+  IS+QW ++G+QG DP TDFRG G + L NL+Y + N+ S   Q L
Sbjct: 133 KLWNLLMPTKKLKARISKQWADIGFQGDDPKTDFRGMGILGLINLVYFSENYTSEAHQIL 192

Query: 151 LRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLY 210
            R          Y +A+ G+N+T M   +L  EA+K        F+  +   E  F   Y
Sbjct: 193 SRSNHPKLG---YSYAIVGINLTEMAYSLLKSEALKFHLY---NFVPGIPTMEH-FHQFY 245

Query: 211 CITFKLMDHQWLAMRA-SYMDFNTVMKSTRRQLERELL 247
           C      D  W   +  S M FN   +    +++  LL
Sbjct: 246 CYLVYEFDKFWFEEKPESIMYFNVYREKFHEKIKGLLL 283

Acts as a GTPase-activating protein (GAP) toward guanine nucleotide exchange factors like ARL2, ARL3, ARF1 and ARF6, but not for GTPases outside the Arf family.

Bos taurus (taxid: 9913)

>sp|Q8IZ81|ELMD2_HUMAN ELMO domain-containing protein 2 OS=Homo sapiens GN=ELMOD2 PE=1 SV=1

 Score = 87.8 bits (216), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 76/150 (50%), Gaps = 15/150 (10%)

Query: 49  QRRESDPRPSFDLTPAQEECLQRL----QLRIDV------AYDSSIPEHREALRALWNAA 98
           + +  +P          + CL ++    QL +DV       YDS   +H E L  LWN  
Sbjct: 79  KEKNINPEKDASFKICMKMCLLQITGYKQLYLDVESVRKRPYDSDNLQHEELLMKLWNLL 138

Query: 99  FPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLARNFPS--FQDLLRKQEG 156
            P ++L   IS+QW E+G+QG DP TDFRG G + L NL+Y + N+ S   Q L R    
Sbjct: 139 MPTKKLNARISKQWAEIGFQGDDPKTDFRGMGILGLINLVYFSENYTSEAHQILSRSNHP 198

Query: 157 DRSVWEYPFAVAGVNITFMLIQMLDLEAVK 186
                 Y +A+ G+N+T M   +L  EA+K
Sbjct: 199 KLG---YSYAIVGINLTEMAYSLLKSEALK 225

Acts as a GTPase-activating protein (GAP) toward guanine nucleotide exchange factors like ARL2, ARL3, ARF1 and ARF6, but not for GTPases outside the Arf family. Regulates IFN-related antiviral responses.

Homo sapiens (taxid: 9606)

>sp|Q499U2|ELMO3_RAT Engulfment and cell motility protein 3 OS=Rattus norvegicus GN=Elmo3 PE=2 SV=1

 Score = 82.8 bits (203), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 95/195 (48%), Gaps = 16/195 (8%)

Query: 72  LQLRIDVAYDSSIPEHREALRALWNAAF-PDEE----------LRDLISEQWKEMGWQGK 120
           L+ R+    D    E RE L+AL  AAF PD E           R L   +++++G+   
Sbjct: 293 LEPRMRTPLDPYSQEQREQLQALRQAAFEPDGESLGTGLSADRRRSLCVREFRKLGFSNS 352

Query: 121 DPSTDFR--GGGFISLENLLYLARNFPS-FQDLLRKQEGDRSVWEYPFAVAGVNITFMLI 177
            P+ D      G ++L+N+LY +R+ PS +   + +        E PFA + + +T +L 
Sbjct: 353 SPAQDLERVPPGLLALDNMLYFSRHAPSAYSRFVLENSSREDKHECPFARSSIQLTVLLC 412

Query: 178 QMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKS 237
           ++L +   +P +     F       + +F  L+C+  +L++  W  MRA+  DF+ VM+ 
Sbjct: 413 ELLHVG--EPCSETAQDFSPMFFSQDHSFHELFCVAIQLLNKTWKEMRATQEDFDKVMQV 470

Query: 238 TRRQLERELLLEDVT 252
            R QL R L L+  +
Sbjct: 471 VREQLARTLALKPTS 485

Involved in cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility. Acts in assocation with DOCK1 and CRK. Was initially proposed to be required in complex with DOCK1 to activate Rac Rho small GTPases. May enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1.

Rattus norvegicus (taxid: 10116)

>sp|Q8BGF6|ELMD2_MOUSE ELMO domain-containing protein 2 OS=Mus musculus GN=Elmod2 PE=2 SV=1

 Score = 82.8 bits (203), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 77/156 (49%), Gaps = 10/156 (6%)

Query: 80  YDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLY 139
           YDS+  +H + L  LW+   P ++L   IS+QW ++G+QG DP TDFRG G + L NL+Y
Sbjct: 120 YDSANAQHEKMLLKLWSLLMPTKKLTARISKQWADIGFQGDDPKTDFRGMGILGLINLVY 179

Query: 140 LARNFPS--FQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLK 197
            + N+ S   Q L R          Y +A+ G+N+T M   +L  EA+K        F+ 
Sbjct: 180 FSENYTSEAHQILSRSNHPKLG---YSYAIVGINLTEMAYSLLKSEALKLHLY---NFVP 233

Query: 198 FLSENESAFDLLYCITFKLMDHQWLAMRA-SYMDFN 232
            +   E  F   YC      D  WL     S M FN
Sbjct: 234 GVPTMEH-FHQFYCYLVYEFDKFWLEEEPESIMYFN 268

Acts as a GTPase-activating protein (GAP) toward guanine nucleotide exchange factors like ARL2, ARL3, ARF1 and ARF6, but not for GTPases outside the Arf family.

Mus musculus (taxid: 10090)

>sp|A6QR40|ELMO3_BOVIN Engulfment and cell motility protein 3 OS=Bos taurus GN=ELMO3 PE=2 SV=1

 Score = 82.0 bits (201), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 93/192 (48%), Gaps = 16/192 (8%)

Query: 72  LQLRIDVAYDSSIPEHREALRALWNAAFPDE-----------ELRDLISEQWKEMGWQGK 120
           L+ R+    D    E RE L+AL  AAF  E             R L + +++++G+   
Sbjct: 293 LEPRMRTPLDPYSQEQREQLQALRQAAFEPEGESVGAGLSADRRRSLCAREFRKLGFSNS 352

Query: 121 DPSTDFR--GGGFISLENLLYLARNFPS-FQDLLRKQEGDRSVWEYPFAVAGVNITFMLI 177
           +P+ D      G ++L+N+LY +R  PS +   + +        E PFA + + +T +L 
Sbjct: 353 NPAQDLERVPPGLLALDNMLYFSRQAPSAYSRFVLENSSREDKHECPFARSSIQLTVLLC 412

Query: 178 QMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKS 237
            +L +   +P +     F       + +F  L+C++ +L++  W  MRA+  DF+ VM+ 
Sbjct: 413 DLLHVG--EPCSETAQDFSPMFFGQDQSFHELFCVSIQLLNKTWKEMRATQEDFDKVMQV 470

Query: 238 TRRQLERELLLE 249
            R QL R L L+
Sbjct: 471 VREQLARTLALK 482

Involved in cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility. Acts in assocation with DOCK1 and CRK. Was initially proposed to be required in complex with DOCK1 to activate Rac Rho small GTPases. May enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1.

Bos taurus (taxid: 9913)

>sp|Q0IIE6|ELMD1_BOVIN ELMO domain-containing protein 1 OS=Bos taurus GN=ELMOD1 PE=2 SV=1

 Score = 82.0 bits (201), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 87/185 (47%), Gaps = 21/185 (11%)

Query: 79  AYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLL 138
           +YDS  P+H E L  LW    P+  L   IS+QW E+G+QG DP TDFRG G + L NL 
Sbjct: 126 SYDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLGLYNLQ 185

Query: 139 YLA-RNFPSFQDLL------RKQEGDRSVWE---------YPFAVAGVNITFMLIQMLDL 182
           Y A R+  + Q +L      +  +  ++ WE         Y FA+ G+NIT +   +L  
Sbjct: 186 YFAERDAAAAQQVLSDSLHPKCSKFSKAEWEKKRMDKAIGYSFAIVGINITDLAYNLLVS 245

Query: 183 EAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRA-SYMDFNTVMKSTRRQ 241
            A+K      A     LS  +  F    C         W+       M+FN V +  R++
Sbjct: 246 GALKTHFYNIAPEAPTLSHFQQTF----CYLMHEFHKFWIEEDPMDIMEFNRVREKFRKR 301

Query: 242 LEREL 246
           + ++L
Sbjct: 302 IIKQL 306

Acts as a GTPase-activating protein (GAP) toward guanine nucleotide exchange factors like ARL2, ARL3, ARF1 and ARF6, but not for GTPases outside the Arf family.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
255571033	267	ELMO domain-containing protein, putative	1.0	0.992	0.913	1e-139
225453354	267	PREDICTED: ELMO domain-containing protei	1.0	0.992	0.910	1e-139
449445499	267	PREDICTED: ELMO domain-containing protei	1.0	0.992	0.883	1e-137
356568581	266	PREDICTED: ELMO domain-containing protei	1.0	0.996	0.875	1e-136
356531822	266	PREDICTED: ELMO domain-containing protei	1.0	0.996	0.872	1e-136
224137120	267	predicted protein [Populus trichocarpa]	1.0	0.992	0.883	1e-135
297734628	287	unnamed protein product [Vitis vinifera]	1.0	0.923	0.846	1e-135
224063629	267	predicted protein [Populus trichocarpa]	1.0	0.992	0.876	1e-135
297817322	266	hypothetical protein ARALYDRAFT_486497 [	1.0	0.996	0.838	1e-129
18411543	266	ELMO/CED-12 domain-containing protein [A	1.0	0.996	0.830	1e-129

>gi|255571033|ref|XP_002526467.1| ELMO domain-containing protein, putative [Ricinus communis] gi|223534142|gb|EEF35858.1| ELMO domain-containing protein, putative [Ricinus communis]

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 244/267 (91%), Positives = 255/267 (95%), Gaps = 2/267 (0%)

Query: 1   MDERGGSFVAVRRISQGLDRG-NTCHSTSAEVVAGSAAWLGRGLSCVCAQRRESDPRPSF 59
           MD+RGGSFVAVRRISQGL+RG NTCHSTSAEVVAGSAAWLGRGLSCVCAQRRESD RPSF
Sbjct: 1   MDDRGGSFVAVRRISQGLERGSNTCHSTSAEVVAGSAAWLGRGLSCVCAQRRESDARPSF 60

Query: 60  DLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQG 119
           DLT  QEECLQRLQ RIDVAYDSSIPEH+EALRALWNAAFP+EELR LISEQWKEMGWQG
Sbjct: 61  DLTLTQEECLQRLQSRIDVAYDSSIPEHQEALRALWNAAFPEEELRGLISEQWKEMGWQG 120

Query: 120 KDPSTDFRGGGFISLENLLYLARNFP-SFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQ 178
           KDPSTDFRGGGFISLENLL+ A+NFP SFQDLL+K+EGDRSVWEYPFAVAGVNITFMLIQ
Sbjct: 121 KDPSTDFRGGGFISLENLLFFAKNFPTSFQDLLQKREGDRSVWEYPFAVAGVNITFMLIQ 180

Query: 179 MLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKST 238
           MLDLEAVKPRTMVGA FLKFL+ENESAFDLLYCITFKLMDHQWL M ASYMDFNTVMKST
Sbjct: 181 MLDLEAVKPRTMVGAVFLKFLTENESAFDLLYCITFKLMDHQWLNMHASYMDFNTVMKST 240

Query: 239 RRQLERELLLEDVTRLEDLPSYSLLSR 265
           RRQLERELLLED+TRLEDLPSY LL+R
Sbjct: 241 RRQLERELLLEDITRLEDLPSYGLLTR 267

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453354|ref|XP_002271650.1| PREDICTED: ELMO domain-containing protein A [Vitis vinifera]

 Score =  498 bits (1283), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 243/267 (91%), Positives = 257/267 (96%), Gaps = 2/267 (0%)

Query: 1   MDERGG-SFVAVRRISQGLDRGNTCHSTSAEVVAGSAAWLGRGLSCVCAQRRESDPRPSF 59
           MD+RGG SFVAVRRISQGLDRGNTCHSTSAEVVAGSAAWLGRGLSCVCAQRRESD RPSF
Sbjct: 1   MDDRGGGSFVAVRRISQGLDRGNTCHSTSAEVVAGSAAWLGRGLSCVCAQRRESDARPSF 60

Query: 60  DLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQG 119
           DLTPAQEECLQRLQ RI+V+YDSSI EH+EALRALWNA+FP+EELRDLISEQWKEMGWQG
Sbjct: 61  DLTPAQEECLQRLQSRIEVSYDSSISEHQEALRALWNASFPEEELRDLISEQWKEMGWQG 120

Query: 120 KDPSTDFRGGGFISLENLLYLARNFP-SFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQ 178
           KDPSTDFRGGGFISLENLL+ ARN+P SFQDLLRKQEGDR++WEYPFAVAGVNITFMLIQ
Sbjct: 121 KDPSTDFRGGGFISLENLLFFARNYPKSFQDLLRKQEGDRALWEYPFAVAGVNITFMLIQ 180

Query: 179 MLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKST 238
           MLDLEAVKPR+M GA FLKFLSENESAFDLLYCITFKLMD+QWLAM ASYMDFNTVMKST
Sbjct: 181 MLDLEAVKPRSMAGAIFLKFLSENESAFDLLYCITFKLMDNQWLAMHASYMDFNTVMKST 240

Query: 239 RRQLERELLLEDVTRLEDLPSYSLLSR 265
           R QLERELLLEDV+RLEDLPSYSLL+R
Sbjct: 241 RCQLERELLLEDVSRLEDLPSYSLLTR 267

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445499|ref|XP_004140510.1| PREDICTED: ELMO domain-containing protein A-like [Cucumis sativus]

 Score =  492 bits (1266), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 236/267 (88%), Positives = 255/267 (95%), Gaps = 2/267 (0%)

Query: 1   MDERGG-SFVAVRRISQGLDRGNTCHSTSAEVVAGSAAWLGRGLSCVCAQRRESDPRPSF 59
           MD+RGG SFVAVRRISQGL+RGNTCHSTSAEVVAGSAAWLGRGLSCVCAQRRESD RPSF
Sbjct: 1   MDDRGGGSFVAVRRISQGLERGNTCHSTSAEVVAGSAAWLGRGLSCVCAQRRESDARPSF 60

Query: 60  DLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQG 119
           DLTPAQEECL RLQ RID+AYDSSI EH+EALR LWN AFP+EELR LISEQWKEMGWQG
Sbjct: 61  DLTPAQEECLLRLQNRIDIAYDSSITEHQEALRTLWNVAFPEEELRGLISEQWKEMGWQG 120

Query: 120 KDPSTDFRGGGFISLENLLYLARNFP-SFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQ 178
           KDPSTDFRGGGFISLENLL+ A+NFP SFQDLLRKQEGDRS+WEYPFAVAGVNITFMLIQ
Sbjct: 121 KDPSTDFRGGGFISLENLLFFAKNFPKSFQDLLRKQEGDRSLWEYPFAVAGVNITFMLIQ 180

Query: 179 MLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKST 238
           MLDLEAVKPRT+VGATFLKFL+EN+SAFDLLYCITFKLMDH+WLAM ASYMDFNTVMK+T
Sbjct: 181 MLDLEAVKPRTLVGATFLKFLAENDSAFDLLYCITFKLMDHEWLAMHASYMDFNTVMKAT 240

Query: 239 RRQLERELLLEDVTRLEDLPSYSLLSR 265
           RRQLE+ELL+ED++RLE+LPSY LL+R
Sbjct: 241 RRQLEKELLIEDISRLEELPSYGLLNR 267

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568581|ref|XP_003552489.1| PREDICTED: ELMO domain-containing protein A-like [Glycine max]

 Score =  489 bits (1258), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 233/266 (87%), Positives = 250/266 (93%), Gaps = 1/266 (0%)

Query: 1   MDERGGSFVAVRRISQGLDRGNTCHSTSAEVVAGSAAWLGRGLSCVCAQRRESDPRPSFD 60
           MD+RGGSFVAVRRISQGLDR NTCHS+SAE V GS AWLGRGLSCVCAQRRESD RPSFD
Sbjct: 1   MDDRGGSFVAVRRISQGLDRSNTCHSSSAEFVTGSTAWLGRGLSCVCAQRRESDARPSFD 60

Query: 61  LTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGK 120
           LTPAQEECLQRLQ RID+ YD SIPEH++ALRALW+AAFP+EEL  LISEQWK MGWQGK
Sbjct: 61  LTPAQEECLQRLQNRIDIPYDGSIPEHQDALRALWSAAFPEEELHGLISEQWKNMGWQGK 120

Query: 121 DPSTDFRGGGFISLENLLYLARNFP-SFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQM 179
           DPSTDFRGGGFISLENLL+ ARNFP SFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQM
Sbjct: 121 DPSTDFRGGGFISLENLLFFARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQM 180

Query: 180 LDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTR 239
           LDLEAVKPRT+VGATFLKFL+EN+SAFDLLYCITFK+MD QWL+MRASYMDFNTVMKSTR
Sbjct: 181 LDLEAVKPRTLVGATFLKFLAENDSAFDLLYCITFKMMDQQWLSMRASYMDFNTVMKSTR 240

Query: 240 RQLERELLLEDVTRLEDLPSYSLLSR 265
           RQLE+ELLLED+ RLED+PSY LL+R
Sbjct: 241 RQLEKELLLEDIMRLEDVPSYKLLTR 266

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531822|ref|XP_003534475.1| PREDICTED: ELMO domain-containing protein A-like [Glycine max]

 Score =  488 bits (1257), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 232/266 (87%), Positives = 250/266 (93%), Gaps = 1/266 (0%)

Query: 1   MDERGGSFVAVRRISQGLDRGNTCHSTSAEVVAGSAAWLGRGLSCVCAQRRESDPRPSFD 60
           MD+RGGSFVAVRRISQGLDR NTCHS+SAE V GS AWLGRGLSCVCAQRRESD RPSFD
Sbjct: 1   MDDRGGSFVAVRRISQGLDRSNTCHSSSAEFVTGSTAWLGRGLSCVCAQRRESDARPSFD 60

Query: 61  LTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGK 120
           LTPAQEECLQRLQ RID+ YD S+PEH++ALR LWNAAFP+EEL  LISEQWK+MGWQGK
Sbjct: 61  LTPAQEECLQRLQSRIDIPYDGSVPEHQDALRDLWNAAFPEEELHGLISEQWKDMGWQGK 120

Query: 121 DPSTDFRGGGFISLENLLYLARNFP-SFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQM 179
           DPSTDFRGGGFISLENLL+ ARNFP SFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQM
Sbjct: 121 DPSTDFRGGGFISLENLLFFARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQM 180

Query: 180 LDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTR 239
           LDLEAVKPRT+VGATFLKFL+EN+SAFDLLYCITFK+MD QWL+MRASYMDFNTVMKSTR
Sbjct: 181 LDLEAVKPRTLVGATFLKFLAENDSAFDLLYCITFKMMDQQWLSMRASYMDFNTVMKSTR 240

Query: 240 RQLERELLLEDVTRLEDLPSYSLLSR 265
           RQLE+ELLLED+ RLED+PSY LL+R
Sbjct: 241 RQLEKELLLEDIMRLEDVPSYKLLTR 266

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137120|ref|XP_002327028.1| predicted protein [Populus trichocarpa] gi|222835343|gb|EEE73778.1| predicted protein [Populus trichocarpa]

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 236/267 (88%), Positives = 254/267 (95%), Gaps = 2/267 (0%)

Query: 1   MDERGGSFVAVRRISQGLDRGN-TCHSTSAEVVAGSAAWLGRGLSCVCAQRRESDPRPSF 59
           MD+RGGSFVAVRRISQGL+RGN TCHS+SAEVVAGSAAWLGRGLSCVCAQRRESD RPSF
Sbjct: 1   MDDRGGSFVAVRRISQGLERGNNTCHSSSAEVVAGSAAWLGRGLSCVCAQRRESDARPSF 60

Query: 60  DLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQG 119
           DLTP QEECLQRLQ RIDVAYDSS+PEH+EAL+ALWNAAFP+EEL  LISEQWKEMGWQG
Sbjct: 61  DLTPPQEECLQRLQSRIDVAYDSSVPEHQEALKALWNAAFPEEELHGLISEQWKEMGWQG 120

Query: 120 KDPSTDFRGGGFISLENLLYLARNFP-SFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQ 178
           KDPSTDFRGGGFISLENLL+ ARNFP SFQDLL+K+EGDRSVWEYPFAVAGVNITFMLIQ
Sbjct: 121 KDPSTDFRGGGFISLENLLFFARNFPTSFQDLLQKREGDRSVWEYPFAVAGVNITFMLIQ 180

Query: 179 MLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKST 238
           MLDLEAVKPRT+VGATFLKFL E++SAFD LYCITFKLMDH+WL MRASYMDFN VMKST
Sbjct: 181 MLDLEAVKPRTLVGATFLKFLEEDDSAFDRLYCITFKLMDHEWLDMRASYMDFNAVMKST 240

Query: 239 RRQLERELLLEDVTRLEDLPSYSLLSR 265
           RRQLERELL ED+TRLE+LPSY+LL+R
Sbjct: 241 RRQLERELLSEDITRLEELPSYTLLTR 267

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734628|emb|CBI16679.3| unnamed protein product [Vitis vinifera]

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 243/287 (84%), Positives = 257/287 (89%), Gaps = 22/287 (7%)

Query: 1   MDERGG-SFVAVRRISQGLDRGNTCHSTS--------------------AEVVAGSAAWL 39
           MD+RGG SFVAVRRISQGLDRGNTCHSTS                    AEVVAGSAAWL
Sbjct: 1   MDDRGGGSFVAVRRISQGLDRGNTCHSTSDLSISVIVNNFMFTDIQICLAEVVAGSAAWL 60

Query: 40  GRGLSCVCAQRRESDPRPSFDLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAF 99
           GRGLSCVCAQRRESD RPSFDLTPAQEECLQRLQ RI+V+YDSSI EH+EALRALWNA+F
Sbjct: 61  GRGLSCVCAQRRESDARPSFDLTPAQEECLQRLQSRIEVSYDSSISEHQEALRALWNASF 120

Query: 100 PDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLARNFP-SFQDLLRKQEGDR 158
           P+EELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLL+ ARN+P SFQDLLRKQEGDR
Sbjct: 121 PEEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLFFARNYPKSFQDLLRKQEGDR 180

Query: 159 SVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMD 218
           ++WEYPFAVAGVNITFMLIQMLDLEAVKPR+M GA FLKFLSENESAFDLLYCITFKLMD
Sbjct: 181 ALWEYPFAVAGVNITFMLIQMLDLEAVKPRSMAGAIFLKFLSENESAFDLLYCITFKLMD 240

Query: 219 HQWLAMRASYMDFNTVMKSTRRQLERELLLEDVTRLEDLPSYSLLSR 265
           +QWLAM ASYMDFNTVMKSTR QLERELLLEDV+RLEDLPSYSLL+R
Sbjct: 241 NQWLAMHASYMDFNTVMKSTRCQLERELLLEDVSRLEDLPSYSLLTR 287

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063629|ref|XP_002301236.1| predicted protein [Populus trichocarpa] gi|222842962|gb|EEE80509.1| predicted protein [Populus trichocarpa]

 Score =  486 bits (1250), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 234/267 (87%), Positives = 251/267 (94%), Gaps = 2/267 (0%)

Query: 1   MDERGGSFVAVRRISQGLDRGN-TCHSTSAEVVAGSAAWLGRGLSCVCAQRRESDPRPSF 59
           MD+RGGSFVAVRRISQGL+RGN TCHSTSAE VAGSAAWLGRGLSCVCAQRRESD RPSF
Sbjct: 1   MDDRGGSFVAVRRISQGLERGNNTCHSTSAEAVAGSAAWLGRGLSCVCAQRRESDARPSF 60

Query: 60  DLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQG 119
           DLTP QEECLQRLQ RIDV YDSS+ +H+EAL+ LWNAAFP+EEL  LISEQWKEMGWQG
Sbjct: 61  DLTPVQEECLQRLQSRIDVPYDSSVLDHQEALKTLWNAAFPEEELHGLISEQWKEMGWQG 120

Query: 120 KDPSTDFRGGGFISLENLLYLARNFP-SFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQ 178
           KDPSTDFRGGGFISLENLL+ ARNFP SFQDLL+K+EGDRSVWEYPFAVAGVNITFMLIQ
Sbjct: 121 KDPSTDFRGGGFISLENLLFFARNFPKSFQDLLQKREGDRSVWEYPFAVAGVNITFMLIQ 180

Query: 179 MLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKST 238
           MLDLEAVKPR +VGATFLKFL+EN+SAFDLLYCITFKLMDH+WL MRASYMDFN VMKST
Sbjct: 181 MLDLEAVKPRALVGATFLKFLAENDSAFDLLYCITFKLMDHEWLTMRASYMDFNAVMKST 240

Query: 239 RRQLERELLLEDVTRLEDLPSYSLLSR 265
           RRQLERELL ED+TRLEDLPSY+LL+R
Sbjct: 241 RRQLERELLSEDITRLEDLPSYTLLTR 267

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817322|ref|XP_002876544.1| hypothetical protein ARALYDRAFT_486497 [Arabidopsis lyrata subsp. lyrata] gi|297322382|gb|EFH52803.1| hypothetical protein ARALYDRAFT_486497 [Arabidopsis lyrata subsp. lyrata]

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 223/266 (83%), Positives = 245/266 (92%), Gaps = 1/266 (0%)

Query: 1   MDERGGSFVAVRRISQGLDRGNTCHSTSAEVVAGSAAWLGRGLSCVCAQRRESDPRPSFD 60
           MD+RGGSFVAVRRISQGL+RG+  HS+SAEVVAGSAAWLGRGLSCVC Q R+ DPRPSFD
Sbjct: 1   MDDRGGSFVAVRRISQGLERGSVYHSSSAEVVAGSAAWLGRGLSCVCVQGRDGDPRPSFD 60

Query: 61  LTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGK 120
           LTPAQEECLQRLQ RIDVAYDSSI +H+EAL+ LW  AFP+EEL  ++SEQWKEMGWQGK
Sbjct: 61  LTPAQEECLQRLQSRIDVAYDSSISQHQEALKDLWKLAFPEEELHGIVSEQWKEMGWQGK 120

Query: 121 DPSTDFRGGGFISLENLLYLARNFP-SFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQM 179
           DPSTDFRGGGFISLENLLY AR FP SFQDLLRKQ GDRSVWEYPFAVAG+NITFMLIQM
Sbjct: 121 DPSTDFRGGGFISLENLLYFARQFPKSFQDLLRKQVGDRSVWEYPFAVAGINITFMLIQM 180

Query: 180 LDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTR 239
           LDLEAVKPR++VG TFL+FLS NESAFDLLYCI FKLMD QWL+MRASYM+FNTVMKSTR
Sbjct: 181 LDLEAVKPRSIVGETFLRFLSVNESAFDLLYCIAFKLMDQQWLSMRASYMEFNTVMKSTR 240

Query: 240 RQLERELLLEDVTRLEDLPSYSLLSR 265
           RQLERE+++ED+T LEDLPSYSLLS+
Sbjct: 241 RQLEREIMVEDITCLEDLPSYSLLSQ 266

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18411543|ref|NP_567097.1| ELMO/CED-12 domain-containing protein [Arabidopsis thaliana] gi|30695160|ref|NP_850727.1| ELMO/CED-12 domain-containing protein [Arabidopsis thaliana] gi|145332909|ref|NP_001078320.1| ELMO/CED-12 domain-containing protein [Arabidopsis thaliana] gi|17473882|gb|AAL38361.1| putative protein [Arabidopsis thaliana] gi|20148671|gb|AAM10226.1| putative protein [Arabidopsis thaliana] gi|21536589|gb|AAM60921.1| unknown [Arabidopsis thaliana] gi|332646511|gb|AEE80032.1| ELMO/CED-12 domain-containing protein [Arabidopsis thaliana] gi|332646512|gb|AEE80033.1| ELMO/CED-12 domain-containing protein [Arabidopsis thaliana] gi|332646514|gb|AEE80035.1| ELMO/CED-12 domain-containing protein [Arabidopsis thaliana]

 Score =  466 bits (1198), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 221/266 (83%), Positives = 244/266 (91%), Gaps = 1/266 (0%)

Query: 1   MDERGGSFVAVRRISQGLDRGNTCHSTSAEVVAGSAAWLGRGLSCVCAQRRESDPRPSFD 60
           MD+RGGSFVAVRRISQGL+RG+  HS+SAEVVAGSAAWLGRGLSCVC Q R+ DPRPSFD
Sbjct: 1   MDDRGGSFVAVRRISQGLERGSVYHSSSAEVVAGSAAWLGRGLSCVCVQGRDGDPRPSFD 60

Query: 61  LTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGK 120
           LTPAQEECLQRLQ RIDVAYDSSIP+H+EAL+ LW  AFP+EEL  ++S+QWKEMGWQGK
Sbjct: 61  LTPAQEECLQRLQSRIDVAYDSSIPQHQEALKDLWKLAFPEEELHGIVSDQWKEMGWQGK 120

Query: 121 DPSTDFRGGGFISLENLLYLARNFP-SFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQM 179
           DPSTDFRGGGFISLENLLY AR FP SF  LLRKQ GDRSVWEYPFAVAG+NITFMLIQM
Sbjct: 121 DPSTDFRGGGFISLENLLYFARKFPKSFHGLLRKQVGDRSVWEYPFAVAGINITFMLIQM 180

Query: 180 LDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTR 239
           LDLEAVKPR++VG TFL+FLS NESAFDLLYCI FKLMD QWL+MRASYM+FNTVMKSTR
Sbjct: 181 LDLEAVKPRSIVGETFLRFLSVNESAFDLLYCIAFKLMDQQWLSMRASYMEFNTVMKSTR 240

Query: 240 RQLERELLLEDVTRLEDLPSYSLLSR 265
           RQLERE+++ED+T LEDLPSYSLLS+
Sbjct: 241 RQLEREIMIEDITSLEDLPSYSLLSQ 266

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
TAIR|locus:2081947	266	AT3G60260 "AT3G60260" [Arabido	1.0	0.996	0.800	1.9e-113
TAIR|locus:2042456	266	AT2G44770 "AT2G44770" [Arabido	1.0	0.996	0.793	8.7e-111
TAIR|locus:2019544	281	AT1G67400 [Arabidopsis thalian	0.875	0.825	0.581	2.1e-70
TAIR|locus:2020753	265	AT1G03620 "AT1G03620" [Arabido	0.879	0.879	0.546	2e-65
TAIR|locus:2096389	323	AT3G03610 "AT3G03610" [Arabido	0.883	0.724	0.542	1.1e-62
TAIR|locus:2102276	213	AT3G43400 "AT3G43400" [Arabido	0.566	0.704	0.593	2.7e-45
DICTYBASE|DDB_G0278051	977	elmoA "engulfment and cell mot	0.418	0.113	0.407	4e-23
DICTYBASE|DDB_G0282949	618	elmoC "engulfment and cell mot	0.637	0.273	0.338	2.2e-22
DICTYBASE|DDB_G0280179	284	elmoB "engulfment and cell mot	0.566	0.528	0.337	2.5e-19
FB|FBgn0037473	316	CG10068 [Drosophila melanogast	0.6	0.503	0.335	4.6e-18

TAIR|locus:2081947 AT3G60260 "AT3G60260" [Arabidopsis thaliana (taxid:3702)]

 Score = 1119 (399.0 bits), Expect = 1.9e-113, P = 1.9e-113
 Identities = 213/266 (80%), Positives = 233/266 (87%)

Query:     1 MDERGGSFVAVRRISQGLDRGNTCHSTSAEVVAGSAAWLGRGLSCVCAQRRESDPRPSFD 60
             MD+RGGSFVAVRRISQGL+RG+  HS+SAEVVAGSAAWLGRGLSCVC Q R+ DPRPSFD
Sbjct:     1 MDDRGGSFVAVRRISQGLERGSVYHSSSAEVVAGSAAWLGRGLSCVCVQGRDGDPRPSFD 60

Query:    61 LTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGK 120
             LTPAQEECLQRLQ RIDVAYDSSIP+H+EAL+ LW  AFP+EEL  ++S+QWKEMGWQGK
Sbjct:    61 LTPAQEECLQRLQSRIDVAYDSSIPQHQEALKDLWKLAFPEEELHGIVSDQWKEMGWQGK 120

Query:   121 DPSTDFRGGGFISLENLLYLARNFP-SFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQM 179
             DPSTDFRGGGFISLENLLY AR FP SF  LLRKQ GDRSVWEYPFAVAG+NITFMLIQM
Sbjct:   121 DPSTDFRGGGFISLENLLYFARKFPKSFHGLLRKQVGDRSVWEYPFAVAGINITFMLIQM 180

Query:   180 LDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTX 239
             LDLEAVKPR++VG TFL+FLS NESAFDLLYCI FKLMD QWL+MRASYM+FNTVMKST 
Sbjct:   181 LDLEAVKPRSIVGETFLRFLSVNESAFDLLYCIAFKLMDQQWLSMRASYMEFNTVMKSTR 240

Query:   240 XXXXXXXXXXDVTRLEDLPSYSLLSR 265
                       D+T LEDLPSYSLLS+
Sbjct:   241 RQLEREIMIEDITSLEDLPSYSLLSQ 266

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

TAIR|locus:2042456 AT2G44770 "AT2G44770" [Arabidopsis thaliana (taxid:3702)]

 Score = 1094 (390.2 bits), Expect = 8.7e-111, P = 8.7e-111
 Identities = 211/266 (79%), Positives = 231/266 (86%)

Query:     1 MDERGGSFVAVRRISQGLDRGNTCHSTSAEVVAGSAAWLGRGLSCVCAQRRESDPRPSFD 60
             MD+R GSFVAVRRISQGL+RG+  +S+SAE V GSAAWLGRGLSCVCAQRR+SD   +FD
Sbjct:     1 MDDREGSFVAVRRISQGLERGSVYNSSSAEAVPGSAAWLGRGLSCVCAQRRDSDANSTFD 60

Query:    61 LTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGK 120
             LTPAQEECLQ LQ RIDVAYDS+IP H+EALR LW  +FP+EEL  LISEQWKEMGWQGK
Sbjct:    61 LTPAQEECLQSLQNRIDVAYDSTIPLHQEALRELWKLSFPEEELHGLISEQWKEMGWQGK 120

Query:   121 DPSTDFRGGGFISLENLLYLARNFP-SFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQM 179
             DPSTDFRGGGFISLENLLY ARNF  SFQDLLRKQ GDRSVWEYPFAVAG+N+TFMLIQM
Sbjct:   121 DPSTDFRGGGFISLENLLYFARNFQKSFQDLLRKQVGDRSVWEYPFAVAGINLTFMLIQM 180

Query:   180 LDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTX 239
             LDLEAVKPRT+VGATFLKFLSENESAFDLLYCI FKLMD QWL+MRASYM+FNTVMKST 
Sbjct:   181 LDLEAVKPRTIVGATFLKFLSENESAFDLLYCIAFKLMDQQWLSMRASYMEFNTVMKSTR 240

Query:   240 XXXXXXXXXXDVTRLEDLPSYSLLSR 265
                       D+  LEDLPSY+LL++
Sbjct:   241 RQLERELMLEDIMHLEDLPSYALLNQ 266

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

TAIR|locus:2019544 AT1G67400 [Arabidopsis thaliana (taxid:3702)]

 Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
 Identities = 136/234 (58%), Positives = 175/234 (74%)

Query:    33 AGSAAW-LGRGLSCVCAQRRESDPRPSFDLTPAQEECLQRLQLRIDVAYDSSIPEHREAL 91
             + + +W + + L+CVC  R+ +  R   +LTP QEE L+RL+ R+   YD+S P+H++AL
Sbjct:    48 SSTPSWRIKKSLTCVCFNRKRAYERICSNLTPLQEERLKRLRKRMKNYYDASRPDHQDAL 107

Query:    92 RALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLARNFP-SFQDL 150
             RALW+A +PDE+L+DLIS+QWK MGWQGKDPSTDFRG GFISLENLL+ A+ F  SFQ L
Sbjct:   108 RALWSATYPDEKLQDLISDQWKNMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRL 167

Query:   151 LRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLY 210
             L KQ G R+ WEYPFAVAGVNITFM++QMLDLEA KPR+ +   FL+ LSE+E AFDLLY
Sbjct:   168 LNKQGGKRAAWEYPFAVAGVNITFMIMQMLDLEASKPRSFIRLVFLQMLSESEWAFDLLY 227

Query:   211 CITFKLMDHQWLAMRASYMDFNTVMKSTXXXXXXXXXXXDVTRLEDLPSYSLLS 264
             C+ F +MD QWL   A+YM+FN V++ T           DV R+ED+PS+SLLS
Sbjct:   228 CVAFVVMDKQWLDKNATYMEFNDVLRCTRGQLERELMMDDVFRIEDMPSFSLLS 281

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

TAIR|locus:2020753 AT1G03620 "AT1G03620" [Arabidopsis thaliana (taxid:3702)]

 Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
 Identities = 130/238 (54%), Positives = 170/238 (71%)

Query:    28 SAEVVAGSAAWLGRGLSCVCAQRRESDPRPSFDLTPAQEECLQRLQLRIDVAYDSSIPEH 87
             +A  + G+ +W+G GL       R  D    + L+P QEE LQRLQ R+ V +D + P+H
Sbjct:    29 TATGMVGTRSWIG-GL--FTRSNRRQDKAVDYTLSPLQEERLQRLQDRMVVPFDETRPDH 85

Query:    88 REALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLARNFP-S 146
             +E+L+ALWN AFP+  L  L++EQWKEMGWQG +PSTDFRG GFI+LENLL+ AR +P  
Sbjct:    86 QESLKALWNVAFPNVHLTGLVTEQWKEMGWQGPNPSTDFRGCGFIALENLLFSARTYPVC 145

Query:   147 FQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEA-VKPRTMVGATFLKFLSENESA 205
             F+ LL KQ GDR+ WEYPFAVAG+NI+FMLIQMLDL+   KP+ + G  FLK L E+E A
Sbjct:   146 FRRLLLKQRGDRAKWEYPFAVAGINISFMLIQMLDLQNNPKPKCLPGMNFLKLLEEDERA 205

Query:   206 FDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTXXXXXXXXXXXDVTRLEDLPSYSLL 263
             FD+LYCI F +MD QWLAM ASYM+FN V+++T           D+ R++DLP+Y+LL
Sbjct:   206 FDVLYCIAFAMMDAQWLAMHASYMEFNEVLQATRNQLERELSLDDIHRIQDLPAYNLL 263

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2096389 AT3G03610 "AT3G03610" [Arabidopsis thaliana (taxid:3702)]

 Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
 Identities = 129/238 (54%), Positives = 167/238 (70%)

Query:    29 AEVVAGSAAWLGRGLSCVCAQRRESDPR--PSFDLTPAQEECLQRLQLRIDVAYDSSIPE 86
             A++V GS + +GR LS     +  +  R  P   L+  QEE L+ ++ RI++ +D S  E
Sbjct:    85 AKIVFGSGSLVGRFLSLPTFGQIGTGGRLLPP-PLSMLQEERLRNIKRRIEIPFDGSRME 143

Query:    87 HREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLARNFP- 145
             H++ALR LW  A+P  EL  L SE WKEMGWQG DPSTDFRGGG+ISLENL++ A+ +P 
Sbjct:   144 HQDALRQLWRLAYPQRELPPLKSELWKEMGWQGTDPSTDFRGGGYISLENLIFFAKTYPE 203

Query:   146 SFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESA 205
             SFQ LL KQ+G R+ WEYPFAVAG+NI+FML QMLDL++ KP T+ G  FL FL E+E A
Sbjct:   204 SFQRLLHKQDGTRAEWEYPFAVAGINISFMLAQMLDLQSGKPSTIAGIRFLGFLEEDEMA 263

Query:   206 FDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTXXXXXXXXXXXDVTRLEDLPSYSLL 263
             FD LYCI F++MD QWLA RASYM+FN V+KST           DV+ + DLP+++LL
Sbjct:   264 FDNLYCIAFQMMDAQWLARRASYMEFNDVLKSTRAQLERELALDDVSSITDLPAFNLL 321

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

TAIR|locus:2102276 AT3G43400 "AT3G43400" [Arabidopsis thaliana (taxid:3702)]

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 92/155 (59%), Positives = 116/155 (74%)

Query:    82 SSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLA 141
             SS P  R  ++    + + DE+L+DLIS+QWK MGWQ KDPSTDFRG GFISLENL + A
Sbjct:    58 SSTPSWR--IKKSLTSTYADEKLQDLISDQWKNMGWQRKDPSTDFRGDGFISLENLRFFA 115

Query:   142 RNFPSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSE 201
             +   +F  LL+KQ G R+ WEYPFAVAGVNITFM++QMLDLEA KPR+ +   FL+ LSE
Sbjct:   116 K---TFSRLLKKQGGKRAAWEYPFAVAGVNITFMIMQMLDLEASKPRSFIRLVFLQMLSE 172

Query:   202 NESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMK 236
             +E AF LLYC+ F +MD QWL   A+YM+FN V++
Sbjct:   173 SEWAFGLLYCVAFVVMDKQWLDKNATYMEFNDVLR 207

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

DICTYBASE|DDB_G0278051 elmoA "engulfment and cell motility ELM family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 220 (82.5 bits), Expect = 4.0e-23, Sum P(2) = 4.0e-23
 Identities = 46/113 (40%), Positives = 65/113 (57%)

Query:    65 QEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPST 124
             Q    Q +  R +V ++    EH   L  LW+  +P  +L   +SEQWK+MG+QG DP T
Sbjct:   362 QRHRFQVITNRKNVTFNKESSEHDALLMKLWSLTYPGVKLESRVSEQWKQMGFQGTDPCT 421

Query:   125 DFRGGGFISLENLLYLARNF-PSFQDLLRKQEGDRSVWEYPFAVAGVNITFML 176
             DFR  G   L+NL+Y A+N+   F+ ++  Q  DR   EYP A AG+ +TF L
Sbjct:   422 DFRAMGIWGLDNLIYFAQNYNEKFRKIVNSQI-DRKEREYPTATAGIVLTFEL 473

GO:0030864 "cortical actin cytoskeleton" evidence=IDA

GO:0050764 "regulation of phagocytosis" evidence=IMP

GO:0048870 "cell motility" evidence=IMP

GO:0045159 "myosin II binding" evidence=IPI

GO:0030837 "negative regulation of actin filament polymerization" evidence=IMP

GO:0030587 "sorocarp development" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006909 "phagocytosis" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

DICTYBASE|DDB_G0282949 elmoC "engulfment and cell motility ELM family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 268 (99.4 bits), Expect = 2.2e-22, P = 2.2e-22
 Identities = 63/186 (33%), Positives = 108/186 (58%)

Query:    61 LTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGK 120
             +T  Q + ++ L  +    Y+S+ P+H E L+ LW+  +P++E +   S  WK+ G+Q  
Sbjct:   357 VTAKQSQTIKILFQKKSTIYESTNPDHEEYLKHLWSLLYPEQEFQKK-SPLWKKFGFQSD 415

Query:   121 DPSTDFRGGGFISLENLLYLARNFPSF-QDLLRKQEGDRSVWEYPFAVAGVNIT---FML 176
             DP+ DFRG G + L NL++L ++   + Q++L +   DR   +YPFAVAG+NI+   F +
Sbjct:   416 DPTRDFRGMGIMGLLNLIHLVQHHNDWVQEILAQ---DR---DYPFAVAGINISNLIFEV 469

Query:   177 IQMLDLEAVKP--RTMVGATFLKFLSE----NESAFDLLYCITFKLMDHQWLAMRASYMD 230
              Q+ +    +P   +   ++++  L      N+ AF+ LY + F L+DH W+ M A+YM 
Sbjct:   470 FQISEDSLQQPWYSSFWSSSYMAMLCSMSRHNDHAFEELYFLIFNLLDHLWIQMNATYMM 529

Query:   231 FNTVMK 236
             F  V+K
Sbjct:   530 FPLVIK 535

GO:0006909 "phagocytosis" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

DICTYBASE|DDB_G0280179 elmoB "engulfment and cell motility ELM family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 54/160 (33%), Positives = 86/160 (53%)

Query:    78 VAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENL 137
             + YD++  EH  +L  LW A  PD      +S++W  +G+QG DP+TDFRG G + L+NL
Sbjct:   116 IPYDNNNLEHEASLERLWEALLPDVRRSARLSKEWGTLGFQGMDPATDFRGMGILGLDNL 175

Query:   138 LYLARNFPSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLK 197
             +Y +      +D     +   S   YPFA+ G+NIT +++ ++D    KP   +   F K
Sbjct:   176 IYFSTQHS--EDAREILKNSNSKCCYPFAITGINITALVLNLID----KPHFKI--YFFK 227

Query:   198 FLSENESAFDLLYCITFKLMDHQWLAMRA-SYMDFNTVMK 236
               S   + F+ LY + F   D  + + +  S M+FNT+ K
Sbjct:   228 NGS-TLTQFNELYSLVFISFDRFYQSKKPKSIMEFNTIKK 266

GO:0006909 "phagocytosis" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

FB|FBgn0037473 CG10068 [Drosophila melanogaster (taxid:7227)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 57/170 (33%), Positives = 82/170 (48%)

Query:    73 QLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFI 132
             QLR +  YDS   +H + L  LW    PD  L   +++QW+++G+QG DP TDFRG G +
Sbjct:   128 QLRAE-KYDSDNLDHEQKLLRLWQLLMPDTPLTGRVTKQWQDIGFQGDDPKTDFRGMGML 186

Query:   133 SLENLLYLAR--NFPSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPR-- 188
              LENLLY A   N  +   LL           Y +A+ G+N+T M   ++   A K    
Sbjct:   187 GLENLLYFATAYNDAAKHVLLHSMHPTLG---YTYAIVGINLTSMAFNLVKTGAAKTHFY 243

Query:   189 TMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRA-SYMDFNTVMKS 237
              +V      F +  +  F  LYC  F   D  W+     + MDF  + +S
Sbjct:   244 NLVVQHRQDFSTVED--FHKLYCYLFFEFDRFWMESDPRNIMDFREIYQS 291

GO:0006909 "phagocytosis" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0000910 "cytokinesis" evidence=IMP

GO:0090175 "regulation of establishment of planar polarity" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00019062001 SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (267 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	265
pfam04727	170	pfam04727, ELMO_CED12, ELMO/CED-12 family	3e-68

>gnl|CDD|218231 pfam04727, ELMO_CED12, ELMO/CED-12 family

 Score =  208 bits (531), Expect = 3e-68
 Identities = 73/171 (42%), Positives = 96/171 (56%), Gaps = 2/171 (1%)

Query: 67  ECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDF 126
             L  L+      +D   PEHR  L+ LW A FPDE L   +SE+WK++G+QG DP+TDF
Sbjct: 1   LTLNLLEKLRKTPFDLENPEHRRLLKTLWKALFPDEPLSSRVSEKWKDLGFQGDDPATDF 60

Query: 127 RGGGFISLENLLYLARNFP-SFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAV 185
           RG G + L NLLY A N+P  FQ LL +     +  EYPFAVA +N+T ML ++L +  +
Sbjct: 61  RGTGLLGLLNLLYFAENYPDEFQKLLLESSHRPAEHEYPFAVASINVTSMLYELLRIGKL 120

Query: 186 KPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMK 236
                    F         AF+ LYC  F L D  W  MRA+ MDFN V++
Sbjct: 121 DQEDYKNYGF-PLFFPTLLAFEELYCALFHLFDRFWKEMRATIMDFNKVLE 170

This family represents a conserved domain which is found in a number of eukaryotic proteins including CED-12, ELMO I and ELMO II. ELMO1 is a component of signalling pathways that regulate phagocytosis and cell migration and is the mammalian orthologue of the C. elegans gene, ced-12. CED-12 is required for the engulfment of dying cells and cell migration. In mammalian cells, ELMO1 interacts with Dock180 as part of the CrkII/Dock180/Rac pathway responsible for phagocytosis and cell migration. ELMO1 is ubiquitously expressed, although its expression is highest in the spleen, an organ rich in immune cells. ELMO1 has a PH domain and a polyproline sequence motif at its C terminus which are not present in this alignment. Length = 170

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	265
KOG2998	302	consensus Uncharacterized conserved protein [Funct	100.0
PF04727	170	ELMO_CED12: ELMO/CED-12 family; InterPro: IPR00681	100.0
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	99.97

>KOG2998 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=2.4e-66  Score=468.08  Aligned_cols=258  Identities=51%  Similarity=0.821  Sum_probs=241.4

Q ss_pred             CCCCCCceeEEe-ecccCCCCCCCCCCCccchhccchhhhcc-----ccccccccccCCCCCCCCCCCHHHHHHHHHHHH
Q 024639            1 MDERGGSFVAVR-RISQGLDRGNTCHSTSAEVVAGSAAWLGR-----GLSCVCAQRRESDPRPSFDLTPAQEECLQRLQL   74 (265)
Q Consensus         1 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~c~~~~~~~~~~~~~~~L~~~Q~~~L~~L~~   74 (265)
                      |++..|..++|+ +.|.+..-+..-+.++.+...|+.+|+|+     ++.|.+...+..+...|..+.+.+.++++.+++
T Consensus        37 ~~~~~g~~ra~~~e~sl~~~~~~~~~~ass~~~~~~~~~~~~v~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~l~~~~e~  116 (302)
T KOG2998|consen   37 TDAYEGASRAVRTETSLGQEKPLLGSTASSEAPPGLISFLGRVMVDKGIKNIVDPNRRIDLAACRHLIPGYRELLQRLEE  116 (302)
T ss_pred             hcCCCCCcceeecchhhhhhhhhhhcccccccChhhhhhhHHHHHHhccccCCCcccchhhhhccccccCcHHHHHHHHH
Confidence            467889999999 78888888888888899999999999999     999999999999999999999999999999999


Q ss_pred             hhccccCCCCHHHHHHHHHHHHHhCCCcccchhhhhHHhhccCCCCCCCCCCCchhHhHHhhHHHHHhccH-HHHHHHHh
Q 024639           75 RIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLARNFP-SFQDLLRK  153 (265)
Q Consensus        75 ~~~~~~d~~n~~H~~~L~~Lw~~~~~~~~~~~~~s~~Wk~lGFQg~dP~TDFRg~GiLgL~~LlyF~~~~~-~~~~il~~  153 (265)
                      ++++|||.+|++|+++|++||+.++|+++++++++++|++|||||+||+|||||+|+|||+||+||+++|| .+++++.+
T Consensus       117 ~~~~~yDs~n~~H~e~L~~lwk~~~p~~~l~~lvs~qW~emGfQG~dPsTDFRG~GfL~LeNLlyFa~~~~~~aq~lL~~  196 (302)
T KOG2998|consen  117 LRQEPYDSDNPDHEELLLDLWKLLYPDKELPGLVSKQWKEMGFQGADPSTDFRGMGFLGLENLLYFARTYPTSAQRLLLK  196 (302)
T ss_pred             HHhccCCCCChhHHHHHHHHHHHhCCCCccchhHHHHHHHhccCCCCCCcccccchHHHHHHHHHHHHhhhHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999 99999999


Q ss_pred             hcCCCCCCCccHHHHHHHHHHHHHHHhhhccCCCc-cccccccccccccchhhHHHHHHHHHHHHHHHHhhCCCCcccHH
Q 024639          154 QEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPR-TMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFN  232 (265)
Q Consensus       154 q~~~~~~~~yPFAvagINIT~~L~~~L~l~~~~~~-~~~~~~f~~ll~~~~~aF~eLy~~~F~~f~~~W~~~~at~mdF~  232 (265)
                      |.  ++.|+|||||||||||+|++++|++++++.. ++....|     +++.+|+.|||++|..||++|+++++||||||
T Consensus       197 s~--~~r~eYpfAVvgINIT~m~~qmL~~eal~~~~~~~~~~~-----~~~~~F~~lYc~af~~~d~~Wl~~~~simefn  269 (302)
T KOG2998|consen  197 SR--HPRWEYPFAVVGINITFMAIQMLDLEALKKHFNNIVKVF-----ETEPAFDLLYCYAFLEFDKQWLEQRATIMEFN  269 (302)
T ss_pred             cC--CCccCCceEEEeecHHHHHHHHHHhhhcccccccccccc-----ccHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence            75  4569999999999999999999999998543 3333333     78899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcccCcCCcCCCCCcccccC
Q 024639          233 TVMKSTRRQLERELLLEDVTRLEDLPSYSLLSR  265 (265)
Q Consensus       233 ~Vl~~~r~qL~r~L~~~~v~~i~d~~~~~~~~~  265 (265)
                      .|++++|.|++++|++.|+..++|+|+|++|.+
T Consensus       270 ~Vlk~~~~qler~L~~~d~~~~~~lp~~~~L~~  302 (302)
T KOG2998|consen  270 TVLKSFRRQLERELSLDDVLLITDLPAFNLLLQ  302 (302)
T ss_pred             HHHHHHHHHHHHhhhhhhhcccccchhhhhhcC
Confidence            999999999999999999999999999999964

>PF04727 ELMO_CED12: ELMO/CED-12 family; InterPro: IPR006816 This entry represents the ELMO (EnguLfment and Cell MOtility) domain, which is found in a number of eukaryotic proteins involved in the cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility, including CED-12, ELMO-1 and ELMO-2

Probab=100.00  E-value=3.7e-49  Score=335.95  Aligned_cols=167  Identities=43%  Similarity=0.771  Sum_probs=151.1

Q ss_pred             HHHHHHHhhccccCCCCHHHHHHHHHHHHHhCCCcccchhhhhHHhhccCCCCCCCCCCCchhHhHHhhHHHHHhccH-H
Q 024639           68 CLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLARNFP-S  146 (265)
Q Consensus        68 ~L~~L~~~~~~~~d~~n~~H~~~L~~Lw~~~~~~~~~~~~~s~~Wk~lGFQg~dP~TDFRg~GiLgL~~LlyF~~~~~-~  146 (265)
                      .|+.|++++++|||++|++|+++|++||++++++.+.+++.+++|++|||||+||+|||||+|+|||+||+||+++|| .
T Consensus         2 ~l~~l~~~~~~~~d~~~~~h~~~L~~Lw~~~~~~~~~~~~~~~~W~~lGFQ~~dP~tDFR~~G~LgL~~L~yf~~~~~~~   81 (170)
T PF04727_consen    2 TLNLLRALAKTPFDPENPEHEELLQELWNALFPDEPPFSRISEHWKELGFQGEDPATDFRGMGLLGLDCLLYFAENYPDE   81 (170)
T ss_pred             hHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCCccCCcCccHHHHhCCCCCCcHHHHhhhhHHHHHHHHHHHHHChHH
Confidence            578899999999999999999999999999999988888999999999999999999999999999999999999999 9


Q ss_pred             HHHHHHhhcCCCCCCCccHHHHHHHHHHHHHHHhhhccCCCccccccccccc-cccchhhHHHHHHHHHHHHHHHHhhCC
Q 024639          147 FQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKF-LSENESAFDLLYCITFKLMDHQWLAMR  225 (265)
Q Consensus       147 ~~~il~~q~~~~~~~~yPFAvagINIT~~L~~~L~l~~~~~~~~~~~~f~~l-l~~~~~aF~eLy~~~F~~f~~~W~~~~  225 (265)
                      +++++.++.++.+..+||||+||||||.+|+++|+++...+....  .+... +.+.+.+|++|||++|..|+++|++++
T Consensus        82 ~~~~l~~~~~~~~~~~~Pfa~~~invt~~l~~~l~~~~~~~~~~~--~~~~~~~~~~~~~f~elf~~~f~~f~~~W~~~~  159 (170)
T PF04727_consen   82 FRRILREQSSRSDENWYPFAVASINVTSLLCELLKLGALDSEFYK--RINFLSFFSSLEAFEELFCACFQLFDRTWKEMN  159 (170)
T ss_pred             HHHHHHHccCcccccccHHHHHHHHHHHHHHHHHhhcccCHHHhh--cccccccCccHHHHHHHHHHHHHHHHHHHccCC
Confidence            999999998766678999999999999999999999765433322  22222 567789999999999999999999999


Q ss_pred             CCcccHHHHHH
Q 024639          226 ASYMDFNTVMK  236 (265)
Q Consensus       226 at~mdF~~Vl~  236 (265)
                      +|+|||++|++
T Consensus       160 at~~dF~~V~~  170 (170)
T PF04727_consen  160 ATIMDFNKVLK  170 (170)
T ss_pred             CCHHHHHhhcC
Confidence            99999999975

ELMO-1 and ELMO-2 are components of signalling pathways that regulate phagocytosis and cell migration and are mammalian orthologues of the Caenorhabditis elegans gene, ced-12 that is required for the engulfment of dying cells and cell migration. ELMO-1/2 act in association with DOCK1 and CRK. ELMO-1/2 interact with the SH3-domain of DOCK1 via an SH3-binding site to enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1. ELMO-1/2 could be part of a complex with DOCK1 and Rac1 that could be required to activate Rac Rho small GTPases. Regulatory GTPases in the Ras superfamily employ a cycle of alternating GTP binding and hydrolysis, controlled by guanine nucleotide exchange factors and GTPase-activating proteins (GAPs), as essential features of their actions in cells. Within the Ras superfamily, the Arf family is composed of 30 members, including 22 Arf-like (Arl) proteins. The ELMO domain has been proposed to be a GAP domain for ARL2 and other members of the Arf family [].; GO: 0006909 phagocytosis, 0005856 cytoskeleton

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=99.97  E-value=4.1e-32  Score=261.53  Aligned_cols=198  Identities=28%  Similarity=0.515  Sum_probs=181.6

Q ss_pred             CCCCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHhCCCccc-----------chhhhhHHhhccCCC-CCCCCC
Q 024639           58 SFDLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEEL-----------RDLISEQWKEMGWQG-KDPSTD  125 (265)
Q Consensus        58 ~~~L~~~Q~~~L~~L~~~~~~~~d~~n~~H~~~L~~Lw~~~~~~~~~-----------~~~~s~~Wk~lGFQg-~dP~TD  125 (265)
                      ..+|+.+|...+..+..|+.++.|+.+.+..+.++.+-..+|.++..           .....+..|.+||.+ .||+.|
T Consensus       275 ~~~lyvlq~L~~glle~Rm~~~md~~~q~qr~~i~~lr~iaf~~~~~~~~~g~~~e~rk~l~~~~ykklgf~n~~npa~d  354 (713)
T KOG2999|consen  275 PIQLYVLQVLTLGLLEVRMRTKMDPQDQVQRELISELRRIAFDDESEPSRRGGGAEVRKILDIESYKKLGFENRINPAQD  354 (713)
T ss_pred             hHHHHHHHHHHHhhhHHhhhcccchhhHHHHHHHHHHHhcCcccccccccCCcchhhhhhhhHHHHHhhcccccCChHHh
Confidence            35899999999999999999999999999999999999999986431           235678999999999 999999


Q ss_pred             CC--chhHhHHhhHHHHHhccH-HHHHHHHhhcCCCCCCCccHHHHHHHHHHHHHHHhhhccCCCccccccccccccccc
Q 024639          126 FR--GGGFISLENLLYLARNFP-SFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSEN  202 (265)
Q Consensus       126 FR--g~GiLgL~~LlyF~~~~~-~~~~il~~q~~~~~~~~yPFAvagINIT~~L~~~L~l~~~~~~~~~~~~f~~ll~~~  202 (265)
                      |-  ++|+|+|+||+||+++|| .+.+++.+++++.+.++|||+..+|.+|.|||++|+.+.  +++.....|.++||.+
T Consensus       355 f~etppG~LAldnMvyFA~~~~~~y~riVlENSsRedkhecpfgr~sieltk~lcEilrVge--~p~E~~~df~pmfFth  432 (713)
T KOG2999|consen  355 FGETPPGRLALDNMVYFARNSPQDYRRIVLENSSREDKHECPFGRMSIELTKILCELLRVGE--PPDELDRDFIPMFFTH  432 (713)
T ss_pred             cccCCchHHHHHHHHHHHHhCHHHHHHHHHhcccccccCcCCcCccHHHHHHHHHHHHhcCC--CchhhcCccceeeecC
Confidence            96  999999999999999999 999999999999999999999999999999999999975  4555556799999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHHHHHHHhhcccCcCCcCCCC
Q 024639          203 ESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERELLLEDVTRLEDLP  258 (265)
Q Consensus       203 ~~aF~eLy~~~F~~f~~~W~~~~at~mdF~~Vl~~~r~qL~r~L~~~~v~~i~d~~  258 (265)
                      +..|+++||+|.++|+++|++|+||-.||++|+.+||+||.|+|..+ +.+++++.
T Consensus       433 d~~Fee~FciciqLlnkTWKEMrAt~edf~KVmqVVrEQl~r~L~~k-p~sld~fk  487 (713)
T KOG2999|consen  433 DTPFEELFCICVQLLNRTWKEMRATAEDFEKVMQVVREQLRRALKRK-PQSLDQFK  487 (713)
T ss_pred             CCcHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHHhccC-CccHHHHH
Confidence            99999999999999999999999999999999999999999999865 77777654

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	265
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 7e-05
 Identities = 45/290 (15%), Positives = 84/290 (28%), Gaps = 82/290 (28%)

Query: 39  LGRGLSCVCAQR-RESDPRPSFD-----LTPAQEEC-------LQRLQLRIDVAYDS--- 82
           LG G + V          +   D     L              LQ+L  +ID  + S   
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 83  ---SIPEHREAL--------------RAL------WNA----AFPDEELRDLISEQWKE- 114
              +I     ++                L       NA    AF +   + L++ ++K+ 
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-NLSCKILLTTRFKQV 277

Query: 115 ----MGWQGKDPSTDFRGGGFISLENLLYLARNFP-SFQDLLRKQEGDRSVWEYPFAVAG 169
                       S D         E    L +      QD L ++    +    P  ++ 
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD-LPREVLTTN----PRRLSI 332

Query: 170 V-------NITFMLIQMLDLEAVKPRTMVGATFLKFLSENE--SAFDLLYC------ITF 214
           +         T+   + ++ + +    +   + L  L   E    FD L        I  
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLT-TII--ESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389

Query: 215 KLMDHQWLAMRASYMDFNTVMKSTRRQLERELLLEDVTRLEDLPSYSLLS 264
            L+   W       +  + VM     +L +  L+E   +     + S+ S
Sbjct: 390 ILLSLIW-----FDVIKSDVMVVV-NKLHKYSLVE---KQPKESTISIPS 430

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00