Citrus Sinensis ID: 024647

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-----
Protein Sequence
MAELFIKQAKQYAETRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQPFYTVDSDPFWEPQRKLVDNKYMTIDFPFEPVDGADSTGPFDRFVIEKTMDLEGYFSYIRSWSAYQTAKDKGVELLTENVIENFRRAWNEDGQSRKVVRFPIYLRIGKVGNNI
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccEEEEcccccHHHHHHHHccccEEEEcccHHHHHHHHcccccccccccccEEHHHHHccccccccccEEEEEEccccccHHHHHHHHHHHHccccEEEEEEEcccccccHHHHHHHHHHHHcccccccHHHHHHHHHcccccccccccccccccccccEEEEEEEEEcHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHccccccEEEEEEEEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHHHEEEEcccHHHHHHcccccccEEEcccccccHHHHHHcccccccccEEEHHHHHHHccHHHHHHHHHHHHcccccEEEEEEcccccccHHHHHHHHHHHHHHccccccHHHHHHHHcccccccccccccccccccccccEEEEEEccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccEEEEEEEEEEEEEEEcccc
Coil and Loop (DISEMBL)
MAELFIKQAKQYaetrpnypEELFKFITskttnhelawdvgtgsgqaaASLSGIFEnvigtetspkqiefatklpniryeltspamSIAELEQNVAAQSTVDLVTIAQAmhwfdlpqfYNQVKWVlkkpngviatwcytvpevnvsvdavfqpfytvdsdpfwepqrklvdnkymtidfpfepvdgadstgpfdrFVIEKTMDLEGYFSYIRSWSAYQTAKDKGVELLTENVIENFRRAwnedgqsrkvvrFPIYLrigkvgnni
Flexible Loop (DISEMBL)
MAELFIKQAkqyaetrpnypEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQPFYTVDSDPFWEPQRKLVDNKYMTIDFPfepvdgadstgPFDRFVIEKTMDLEGYFSYIRSWSAYQTAKDKGVELLTENVIENFrrawnedgqsrkvvrfpiylrigkvgnni
Low Complexity Region (SEG)
MAELFIKQAKQYAETRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQPFYTVDSDPFWEPQRKLVDNKYMTIDFPFEPVDGADSTGPFDRFVIEKTMDLEGYFSYIRSWSAYQTAKDKGVELLTENVIENFRRAWNEDGQSRKVVRFPIYLRIGKVGNNI
Disordered region (IsUnstruct)
******************YPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQPFYTVDSDPFWEPQRKLVDNKYMTIDFPFEPVDGADSTGPFDRFVIEKTMDLEGYFSYIRSWSAYQTAKDKGVELLTENVIENFRRAWNEDGQSRKVVRFPIYLRIGKV****
Disordered Region (DISOPRED)
*AELFIKQAKQYAETRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQPFYTVDSDPFWEPQRKLVDNKYMTIDFPFEPVDGADSTGPFDRFVIEKTMDLEGYFSYIRSWSAYQTA*DKGVELLTENVIENFRRAWNEDGQSRKVVRFPIYLRIGKVGN**
Disordered Region (DISEMBL)
MAELFIKQAKQYAETRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQPFYTVDSDPFWEPQRKLVDNKYMTIDFPFEPVDGADSTGPFDRFVIEKTMDLEGYFSYIRSWSAYQTAKDKGVELLTENVIENFRRAWNEDGQSRKVVRFPIYLRIGKVGNNI
Disordered Region (DISPRO)
*AELFIKQAKQYAETRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQPFYTVDSDPFWEPQRKLVDNKYMTIDFPFEPVDGADSTGPFDRFVIEKTMDLEGYFSYIRSWSAYQTAKDKGVELLTENVIENFRRAWNEDGQSRKVVRFPIYLRIGKVGN**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAELFIKQAKQYAETRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQPFYTVDSDPFWEPQRKLVDNKYMTIDFPFEPVDGADSTGPFDRFVIEKTMDLEGYFSYIRSWSAYQTAKDKGVELLTENVIENFRRAWNEDGQSRKVVRFPIYLRIGKVGNNI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	265	2.2.26 [Sep-21-2011]
Q55EX9	263	Putative methyltransferas	no	no	0.894	0.901	0.333	6e-31
P38892	291	Probable S-adenosylmethio	yes	no	0.766	0.697	0.248	2e-09
A6ZRD1	299	Trans-aconitate 3-methylt	N/A	no	0.837	0.742	0.246	1e-06
P32643	299	Trans-aconitate 3-methylt	no	no	0.837	0.742	0.246	2e-06
P65349	243	Uncharacterized methyltra	yes	no	0.460	0.502	0.251	0.0006
P65348	243	Uncharacterized methyltra	yes	no	0.460	0.502	0.251	0.0006
Q9UTA9	251	Uncharacterized methyltra	yes	no	0.433	0.458	0.283	0.0009

>sp|Q55EX9|Y8948_DICDI Putative methyltransferase DDB_G0268948 OS=Dictyostelium discoideum GN=DDB_G0268948 PE=1 SV=2

 Score =  134 bits (338), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 86/258 (33%), Positives = 131/258 (50%), Gaps = 21/258 (8%)

Query: 9   AKQYAETRPNYPEELFKFITSKTT-NHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQ 67
           +K Y   RP Y +EL+  I S      +LA D+G GSGQA   L+  F+ VIG E S  Q
Sbjct: 19  SKSYKNFRPTYNDELYSIIDSHCDEKRDLAIDIGAGSGQATVRLAKYFKKVIGFEPSQGQ 78

Query: 68  IEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLK 127
           IE A K  N+ Y L++        E+      +VDL+T+AQA HWF+LP FY + K +L+
Sbjct: 79  IENAEKTDNVEYRLSAA-------EKIDLPSGSVDLITVAQAAHWFNLPVFYEESKRLLR 131

Query: 128 KPNGVIATWCYTVPEVNVSVDAVF---QPFYTVDSDPFWEPQRKLVDNKYMTIDFPFEPV 184
           + NG +  W Y + ++  + DA     + +Y    D +W P+RK +D++Y+ I   FE  
Sbjct: 132 E-NGSLIIWSYGLMKITNNNDAQVVHEKHYYETIGDQYWAPERKYIDDEYVDIKPSFENT 190

Query: 185 DGADSTGPFDRFVIEKTMDLEGYFSYIRSWSAYQTAKDKGVELLTENVIENFRRAWN-ED 243
                + P       K+M +     Y  SWS Y      G + +   + E   +A+   D
Sbjct: 191 TRKTISLP-------KSMSINDMIGYYSSWSGYAAFIKAGNKDVLPEIKETLLKAYKTTD 243

Query: 244 GQSRKV-VRFPIYLRIGK 260
           G S+ + V FP+Y+ + K
Sbjct: 244 GDSKLIDVNFPVYMILSK 261

Dictyostelium discoideum (taxid: 44689)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|P38892|CRG1_YEAST Probable S-adenosylmethionine-dependent methyltransferase CRG1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CRG1 PE=1 SV=1

 Score = 63.2 bits (152), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 108/249 (43%), Gaps = 46/249 (18%)

Query: 8   QAKQYAETRPNYP----EELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTET 63
           ++  Y   RP+YP     E+ KF   K T   L  D+G G+G+A   +   F+ VIG + 
Sbjct: 12  ESAHYNNVRPSYPLSLVNEIMKF--HKGTRKSLV-DIGCGTGKATFVVEPYFKEVIGIDP 68

Query: 64  SPKQIEFATKLPN-------IRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLP 116
           S   +  A K  N       IR+ + +P   ++ +        +VD+V  A+A+HW +L 
Sbjct: 69  SSAMLSIAEKETNERRLDKKIRF-INAPGEDLSSIRP-----ESVDMVISAEAIHWCNLE 122

Query: 117 QFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQPFYTVDSDPFW------------- 163
           + + QV  +L+  +G  A W Y  PE  V        +Y       +             
Sbjct: 123 RLFQQVSSILRS-DGTFAFWFYIQPEF-VDFPEALNVYYKYGWSKDYMGKYLNDNQREIL 180

Query: 164 -----EPQRKLVDNKY----MTIDFPFEPVDGADSTGPFDRFVIEKTMDLEGYFSYIRSW 214
                E  R L+ +++    +TI  P +P + +  T    +F+    + L  +  +++SW
Sbjct: 181 LNYGGEKLRSLLSDRFGDIEVTIYSPSDP-NASTVTAENSQFLWRAAITLNQFKEFVKSW 239

Query: 215 SAYQT-AKD 222
           S Y + A+D
Sbjct: 240 SIYTSWARD 248

Probable S-adenosylmethionine-dependent methyltransferase which mediates cantharidin resistance.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A6ZRD1|TMT1_YEAS7 Trans-aconitate 3-methyltransferase OS=Saccharomyces cerevisiae (strain YJM789) GN=TMT1 PE=3 SV=1

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 110/264 (41%), Gaps = 42/264 (15%)

Query: 35  ELAWDVGTGSGQAAASLS---GIFENVIGTETSPKQIEFATKLP--------NIRYELTS 83
           +L  DVG G G A   ++     FE +IG++ S   I+ A  +         N+ ++++S
Sbjct: 38  KLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISS 97

Query: 84  PAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT---V 140
            +     L  +   +  +D++T  +  HWFD  +F       L+K +G IA W Y     
Sbjct: 98  -SDDFKFLGADSVDKQKIDMITAVECAHWFDFEKFQRSAYANLRK-DGTIAIWGYADPIF 155

Query: 141 PEVNVSVDAVFQ-PFYTVDSDPFWE-PQRKLVDNKYMTIDFPFEP-------------VD 185
           P+     D + + P+      P+WE P R  + N  M  D   +P              D
Sbjct: 156 PDYPEFDDLMIEVPYGKQGLGPYWEQPGRSRLRN--MLKDSHLDPELFHDIQVSYFCAED 213

Query: 186 GADSTGPFDR----FVIEKTMDLEGYFSYIRSWSAY----QTAKDKGVELLTENVI-ENF 236
             D            +I K + L  +  Y+R+WSAY    Q  K+K  E + +  I E+ 
Sbjct: 214 VRDKVKLHQHTKKPLLIRKQVTLMEFADYVRTWSAYHQWKQDPKNKDKEDVADWFIKESL 273

Query: 237 RRAWNEDGQSRKVVRFPIYLRIGK 260
           RR       ++  V +  + ++GK
Sbjct: 274 RRRPELSTNTKIEVVWNTFYKLGK 297

Catalyzes the S-adenosylmethionine monomethyl esterification of trans-aconitate and 3-isopropylmalate at high affinity and of other molecules like cis-aconitate, isocitrate, and citrate at lower velocities and affinities. The function of trans-aconitate methylation appears to be in reducing the toxicity of this spontaneous breakdown product of cis-aconitate. The role of 3-isopropylmalate methylation is unclear but may represent a metabolic branch at 3-isopropylmalate, where some of the material is taken in the pathway leading to leucine and some is taken in a pathway to the 3-isopropylmalate methyl ester, a molecule that provides a signal to switch from vegetative to invasive growth in response to amino acid starvation.

Saccharomyces cerevisiae (strain YJM789) (taxid: 307796)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 5

>sp|P32643|TMT1_YEAST Trans-aconitate 3-methyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TMT1 PE=1 SV=1

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 110/264 (41%), Gaps = 42/264 (15%)

Query: 35  ELAWDVGTGSGQAAASLS---GIFENVIGTETSPKQIEFATKLP--------NIRYELTS 83
           +L  DVG G G A   ++     FE +IG++ S   I+ A  +         N+ ++++S
Sbjct: 38  KLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISS 97

Query: 84  PAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT---V 140
            +     L  +   +  +D++T  +  HWFD  +F       L+K +G IA W Y     
Sbjct: 98  -SDDFKFLGADSVDKQKIDMITAVECAHWFDFEKFQRSAYANLRK-DGTIAIWGYADPIF 155

Query: 141 PEVNVSVDAVFQ-PFYTVDSDPFWE-PQRKLVDNKYMTIDFPFEP-------------VD 185
           P+     D + + P+      P+WE P R  + N  M  D   +P              D
Sbjct: 156 PDYPEFDDLMIEVPYGKQGLGPYWEQPGRSRLRN--MLKDSHLDPELFHDIQVSYFCAED 213

Query: 186 GADSTGPFDR----FVIEKTMDLEGYFSYIRSWSAY----QTAKDKGVELLTENVI-ENF 236
             D            +I K + L  +  Y+R+WSAY    Q  K+K  E + +  I E+ 
Sbjct: 214 VRDKVKLHQHTKKPLLIRKQVTLVEFADYVRTWSAYHQWKQDPKNKDKEDVADWFIKESL 273

Query: 237 RRAWNEDGQSRKVVRFPIYLRIGK 260
           RR       ++  V +  + ++GK
Sbjct: 274 RRRPELSTNTKIEVVWNTFYKLGK 297

Catalyzes the S-adenosylmethionine monomethyl esterification of trans-aconitate and 3-isopropylmalate at high affinity and of other molecules like cis-aconitate, isocitrate, and citrate at lower velocities and affinities. The function of trans-aconitate methylation appears to be in reducing the toxicity of this spontaneous breakdown product of cis-aconitate. The role of 3-isopropylmalate methylation is unclear but may represent a metabolic branch at 3-isopropylmalate, where some of the material is taken in the pathway leading to leucine and some is taken in a pathway to the 3-isopropylmalate methyl ester, a molecule that provides a signal to switch from vegetative to invasive growth in response to amino acid starvation.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 5

>sp|P65349|Y3374_MYCBO Uncharacterized methyltransferase Mb3374 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb3374 PE=3 SV=1

 Score = 45.1 bits (105), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 9/131 (6%)

Query: 1   MAELFIKQAKQYAETRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIG 60
           M+  F      Y   RP+YP E   ++        L  D+G G+G+    L     +V+ 
Sbjct: 8   MSLSFGSAVGAYERGRPSYPPEAIDWLLPAAARRVL--DLGAGTGKLTTRLVERGLDVVA 65

Query: 61  TETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYN 120
            +  P+ ++       +R  L      +   E+     ++VD V +AQA HW D  +   
Sbjct: 66  VDPIPEMLDV------LRAALPQTVALLGTAEEIPLDDNSVDAVLVAQAWHWVDPARAIP 119

Query: 121 QVKWVLKKPNG 131
           +V  VL +P G
Sbjct: 120 EVARVL-RPGG 129

Mycobacterium bovis (taxid: 1765)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|P65348|Y3342_MYCTU Uncharacterized methyltransferase Rv3342/MT3445 OS=Mycobacterium tuberculosis GN=Rv3342 PE=3 SV=1

 Score = 45.1 bits (105), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 9/131 (6%)

Query: 1   MAELFIKQAKQYAETRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIG 60
           M+  F      Y   RP+YP E   ++        L  D+G G+G+    L     +V+ 
Sbjct: 8   MSLSFGSAVGAYERGRPSYPPEAIDWLLPAAARRVL--DLGAGTGKLTTRLVERGLDVVA 65

Query: 61  TETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYN 120
            +  P+ ++       +R  L      +   E+     ++VD V +AQA HW D  +   
Sbjct: 66  VDPIPEMLDV------LRAALPQTVALLGTAEEIPLDDNSVDAVLVAQAWHWVDPARAIP 119

Query: 121 QVKWVLKKPNG 131
           +V  VL +P G
Sbjct: 120 EVARVL-RPGG 129

Mycobacterium tuberculosis (taxid: 1773)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9UTA9|YL89_SCHPO Uncharacterized methyltransferase C25B8.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC25B8.09 PE=3 SV=1

 Score = 44.3 bits (103), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 65/127 (51%), Gaps = 12/127 (9%)

Query: 12  YAETRPNYPEELFKFITSKTTNHELA--WDVGTGSGQAAASL-SGIFENVIGTETSPKQI 68
           Y   RP+YP ++ +++  + + +E +   ++G GSG+    + +   + +I  +T  + +
Sbjct: 13  YETARPDYPPQITEWLNDEFSVNETSTILELGAGSGKLTPRIIASQPKEIIAVDTYVEML 72

Query: 69  E-FATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLK 127
           +    K PN+   + S AM+I  LE       +VDLV   Q  HWF   +   ++  VL 
Sbjct: 73  DVLKKKFPNVDCRVGS-AMAIP-LED-----ESVDLVACGQCFHWFANEEALKEIYRVL- 124

Query: 128 KPNGVIA 134
           KPNG +A
Sbjct: 125 KPNGKLA 131

Probable methyltransferase.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
224090001	263	predicted protein [Populus trichocarpa]	0.988	0.996	0.752	1e-119
118488865	263	unknown [Populus trichocarpa x Populus d	0.988	0.996	0.745	1e-117
359482211	265	PREDICTED: putative methyltransferase DD	0.984	0.984	0.714	1e-109
255581373	265	S-adenosylmethionine-dependent methyltra	0.988	0.988	0.699	1e-107
428230426	263	S-adenosylmethionine-dependent methyltra	0.988	0.996	0.688	1e-106
388515407	261	unknown [Lotus japonicus]	0.981	0.996	0.634	9e-97
357509479	261	Methyltransferase, putative [Medicago tr	0.981	0.996	0.615	5e-94
297739908	530	unnamed protein product [Vitis vinifera]	0.981	0.490	0.610	5e-94
359482213	276	PREDICTED: putative methyltransferase DD	0.981	0.942	0.610	8e-94
356504712	286	PREDICTED: LOW QUALITY PROTEIN: putative	0.920	0.853	0.648	4e-93

>gi|224090001|ref|XP_002308901.1| predicted protein [Populus trichocarpa] gi|222854877|gb|EEE92424.1| predicted protein [Populus trichocarpa]

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 198/263 (75%), Positives = 236/263 (89%), Gaps = 1/263 (0%)

Query: 1   MAELFIKQAKQYAETRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIG 60
           MAELF++QAKQYAETRP+YP+ELF+FI SKT + +L WDVGTGSGQAA SL+GI++NVIG
Sbjct: 1   MAELFVEQAKQYAETRPSYPQELFEFIASKTPSRDLVWDVGTGSGQAARSLAGIYKNVIG 60

Query: 61  TETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYN 120
           T+TS KQ+EFA KLPN+RY+ T P MS+ ELEQ V+ QS+VDLVTIAQAMHWFDLP FY 
Sbjct: 61  TDTSLKQLEFAPKLPNVRYQQTPPVMSMGELEQTVSTQSSVDLVTIAQAMHWFDLPSFYQ 120

Query: 121 QVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQPFYTVDSDPFWEPQRKLVDNKYMTIDFP 180
           QVKWVLKKP+GVIA WCYT+PEVN SVD+VF PFY++DSDP+WEPQRKLVDNKYM+IDFP
Sbjct: 121 QVKWVLKKPHGVIAAWCYTIPEVNDSVDSVFNPFYSIDSDPYWEPQRKLVDNKYMSIDFP 180

Query: 181 FEPVDGADSTGPFDRFVIEKTMDLEGYFSYIRSWSAYQTAKDKGVELLTENVIENFRRAW 240
           FEPV+G D+TGPF +FV EK MDL+ YF+YIRSWSAYQTAK KGVELL ++VIE+F+RAW
Sbjct: 181 FEPVEGTDNTGPF-KFVTEKMMDLDEYFTYIRSWSAYQTAKAKGVELLRDDVIESFKRAW 239

Query: 241 NEDGQSRKVVRFPIYLRIGKVGN 263
           NEDG  +KVV+FP++L+IGKVGN
Sbjct: 240 NEDGHGQKVVKFPVHLKIGKVGN 262

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488865|gb|ABK96242.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  425 bits (1093), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 196/263 (74%), Positives = 233/263 (88%), Gaps = 1/263 (0%)

Query: 1   MAELFIKQAKQYAETRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIG 60
           MAELF++QAKQYAETRP YP+ELF+ I SKT + +L WDVGTGSGQAA SL+GI++NVIG
Sbjct: 1   MAELFVEQAKQYAETRPIYPQELFESIASKTPSRDLVWDVGTGSGQAARSLAGIYKNVIG 60

Query: 61  TETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYN 120
           T+TS KQ+EFA KLPN+ Y+ T P MS+ ELEQ V+ QS+VDLVTIAQAMHWFDLP FY 
Sbjct: 61  TDTSLKQLEFAPKLPNVNYQQTPPVMSMGELEQTVSTQSSVDLVTIAQAMHWFDLPSFYQ 120

Query: 121 QVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQPFYTVDSDPFWEPQRKLVDNKYMTIDFP 180
           QVKWVLKKP+GVIA WCYT+PEVN SVD+VF PFY++DSDP+WEPQRKLVDNKYM+IDFP
Sbjct: 121 QVKWVLKKPHGVIAAWCYTIPEVNDSVDSVFNPFYSIDSDPYWEPQRKLVDNKYMSIDFP 180

Query: 181 FEPVDGADSTGPFDRFVIEKTMDLEGYFSYIRSWSAYQTAKDKGVELLTENVIENFRRAW 240
           FEPV+G D+TGPF +FV EK MDL+ YF+YIRSWSAYQTAK KGVELL ++VIE+F+RAW
Sbjct: 181 FEPVEGTDNTGPF-KFVTEKMMDLDEYFTYIRSWSAYQTAKAKGVELLRDDVIESFKRAW 239

Query: 241 NEDGQSRKVVRFPIYLRIGKVGN 263
           NEDG  +KVV+FP++L+IGKVGN
Sbjct: 240 NEDGHGQKVVKFPVHLKIGKVGN 262

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482211|ref|XP_003632729.1| PREDICTED: putative methyltransferase DDB_G0268948-like [Vitis vinifera] gi|297739907|emb|CBI30089.3| unnamed protein product [Vitis vinifera]

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 188/263 (71%), Positives = 223/263 (84%), Gaps = 2/263 (0%)

Query: 1   MAELFIKQAKQYAETRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIG 60
           MAELF +QAKQY+E RP+YP ELF+FI SKT + +L WDVGTGSGQAA SL+GI++NVIG
Sbjct: 1   MAELFTEQAKQYSEARPSYPPELFQFIASKTPDRDLVWDVGTGSGQAAVSLAGIYKNVIG 60

Query: 61  TETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYN 120
           TETS  Q+EFA KLPNIRY+ TSP M+IA+L+ +VAAQS+VDLVTIAQAMHWFDLP+FY 
Sbjct: 61  TETSQSQLEFAAKLPNIRYQYTSPVMTIADLQASVAAQSSVDLVTIAQAMHWFDLPKFYQ 120

Query: 121 QVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQPFYTVDSDPFWEPQRKLVDNKYMTIDFP 180
           QV+WVLKKP+GVIA WCYTVPEVN SVD VF+ FY  DS P+W+  R LVD+KY +I+FP
Sbjct: 121 QVEWVLKKPHGVIAAWCYTVPEVNESVDLVFERFYA-DSKPYWDSARDLVDDKYRSIEFP 179

Query: 181 FEPVDGADSTGPFDRFVIEKTMDLEGYFSYIRSWSAYQTAKDKGVELLTENVIENFRRAW 240
           F+PVDG D TGPF RF  E+ MDLE YF+YIRSWS+YQTAK +GVELL  +VIE+F RAW
Sbjct: 180 FKPVDGEDDTGPF-RFKTERIMDLEAYFTYIRSWSSYQTAKKEGVELLRNDVIEDFERAW 238

Query: 241 NEDGQSRKVVRFPIYLRIGKVGN 263
           N DG+ +KVV +PIYLRIGKVGN
Sbjct: 239 NRDGKGKKVVTYPIYLRIGKVGN 261

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581373|ref|XP_002531495.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] gi|223528882|gb|EEF30882.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 184/263 (69%), Positives = 220/263 (83%), Gaps = 1/263 (0%)

Query: 1   MAELFIKQAKQYAETRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIG 60
           MAELFIKQAKQYAE RPNYP+ELF+FI SKT    LAWDVGTGSGQAA SL+ I++NVI 
Sbjct: 1   MAELFIKQAKQYAEGRPNYPQELFQFIASKTPGKGLAWDVGTGSGQAAQSLAEIYKNVIA 60

Query: 61  TETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYN 120
           T+TS KQ+EFA KLPN+RY+ T P + + E EQ ++++S+VDLVTIAQA+HWFDLP FY 
Sbjct: 61  TDTSMKQLEFAPKLPNVRYQRTPPVIPMNEFEQYISSESSVDLVTIAQAIHWFDLPAFYQ 120

Query: 121 QVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQPFYTVDSDPFWEPQRKLVDNKYMTIDFP 180
           QVKWVLKKP+GVIA WCYTVPEVN SVD+VF PFYT+DS+PFW   RK VD+KY  I FP
Sbjct: 121 QVKWVLKKPHGVIAAWCYTVPEVNESVDSVFHPFYTIDSEPFWSSGRKWVDDKYTNIHFP 180

Query: 181 FEPVDGADSTGPFDRFVIEKTMDLEGYFSYIRSWSAYQTAKDKGVELLTENVIENFRRAW 240
           FEPV+G D TGP  RFVIEK M L+ YF+Y+RSWSAYQTAK++GV+LL + V + F+ AW
Sbjct: 181 FEPVEGVDHTGP-HRFVIEKVMSLDDYFTYLRSWSAYQTAKERGVDLLKDEVTKEFKNAW 239

Query: 241 NEDGQSRKVVRFPIYLRIGKVGN 263
           N+DG+ +KVV+FPIYLRIGKVGN
Sbjct: 240 NKDGEDKKVVKFPIYLRIGKVGN 262

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|428230426|gb|AFY98896.1| S-adenosylmethionine-dependent methyltransferase [Jatropha curcas]

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 181/263 (68%), Positives = 222/263 (84%), Gaps = 1/263 (0%)

Query: 1   MAELFIKQAKQYAETRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIG 60
           MA+LFIKQAKQYAE RP+YP+ELF+FI SKT   +LAWDVGTGSGQA  SL+ IF+NVI 
Sbjct: 1   MAQLFIKQAKQYAEARPSYPKELFQFIASKTPIKDLAWDVGTGSGQAVHSLAEIFKNVIA 60

Query: 61  TETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYN 120
           T+TS KQ+EFA KLPN+RY+ T P + + E EQ ++ +S+VDLVTIAQAMHWFDLP+FY+
Sbjct: 61  TDTSSKQLEFAPKLPNVRYQQTPPTIPMEEFEQYISIESSVDLVTIAQAMHWFDLPKFYH 120

Query: 121 QVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQPFYTVDSDPFWEPQRKLVDNKYMTIDFP 180
           QVKWVLKKP+GVIA WCYTVPEVN S+D+VF+PFY +DS+P+WE  RK VD+KY  I FP
Sbjct: 121 QVKWVLKKPHGVIAAWCYTVPEVNDSIDSVFKPFYAIDSEPYWEAGRKWVDDKYQNIYFP 180

Query: 181 FEPVDGADSTGPFDRFVIEKTMDLEGYFSYIRSWSAYQTAKDKGVELLTENVIENFRRAW 240
           FEPV+G+D TGP  +FVIE+ M L+ +F+Y+RSWSAYQTAK+KGV+LL  +VIE F+ AW
Sbjct: 181 FEPVEGSDDTGPV-KFVIERVMRLDDFFTYLRSWSAYQTAKEKGVDLLRNDVIEKFKNAW 239

Query: 241 NEDGQSRKVVRFPIYLRIGKVGN 263
           NEDG   KVV+FP+YLRIGKVGN
Sbjct: 240 NEDGSDEKVVKFPVYLRIGKVGN 262

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388515407|gb|AFK45765.1| unknown [Lotus japonicus]

 Score =  358 bits (920), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 167/263 (63%), Positives = 207/263 (78%), Gaps = 3/263 (1%)

Query: 1   MAELFIKQAKQYAETRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIG 60
           M+ LF+KQAKQYA  RP+YP +LF+FI SKT +H LAWDV TGSGQAA SL+ +++NVI 
Sbjct: 1   MSNLFVKQAKQYAGARPSYPPQLFQFIASKTPSHNLAWDVATGSGQAAKSLAELYQNVIA 60

Query: 61  TETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYN 120
           T+ S KQ+EFATKLPN+RY+ T   MSIAE+EQ VA Q T+DLVTIAQ +HWFDLP FY 
Sbjct: 61  TDASEKQLEFATKLPNVRYQHTPSTMSIAEVEQKVAPQGTIDLVTIAQGLHWFDLPNFYA 120

Query: 121 QVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQPFYTVDSDPFWEPQRKLVDNKYMTIDFP 180
           QV WVLKKP+GVIA W Y +P ++ +VD+V   FY  D+ P+W+  R+LV+N Y TIDFP
Sbjct: 121 QVNWVLKKPHGVIAAWSYNLPRLSDAVDSVLDQFYGSDTKPYWDQARRLVENNYRTIDFP 180

Query: 181 FEPVDGADSTGPFDRFVIEKTMDLEGYFSYIRSWSAYQTAKDKGVELLTENVIENFRRAW 240
           FEPVDGAD TGPF+ FV E  MD + + +YI+SWS YQTAK+KGVELL E+V+E F+ AW
Sbjct: 181 FEPVDGADHTGPFE-FVTETVMDFDDFLTYIKSWSVYQTAKEKGVELLGEDVVEKFKLAW 239

Query: 241 NEDGQSRKVVRFPIYLRIGKVGN 263
            EDGQ  KV ++PIYLRIGKV +
Sbjct: 240 GEDGQ--KVAKYPIYLRIGKVSD 260

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357509479|ref|XP_003625028.1| Methyltransferase, putative [Medicago truncatula] gi|124359974|gb|ABN07990.1| SAM (and some other nucleotide) binding motif [Medicago truncatula] gi|217073190|gb|ACJ84954.1| unknown [Medicago truncatula] gi|355500043|gb|AES81246.1| Methyltransferase, putative [Medicago truncatula] gi|388520715|gb|AFK48419.1| unknown [Medicago truncatula]

 Score =  350 bits (897), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 162/263 (61%), Positives = 200/263 (76%), Gaps = 3/263 (1%)

Query: 1   MAELFIKQAKQYAETRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIG 60
           MAELF+ Q K+YA+ RP+YP +LF+FI SKT +H L WDV TGSGQAA SL+ +++NVI 
Sbjct: 1   MAELFVNQGKEYADARPSYPPQLFQFIASKTPSHNLVWDVATGSGQAAKSLAALYKNVIA 60

Query: 61  TETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYN 120
           T+ S +Q+EFATKLPN++Y+ T   MSI ELEQ V  Q T+DLVTIAQ +HWFDLP FY 
Sbjct: 61  TDVSEQQLEFATKLPNVQYKHTPSTMSIPELEQIVTPQGTIDLVTIAQGLHWFDLPNFYQ 120

Query: 121 QVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQPFYTVDSDPFWEPQRKLVDNKYMTIDFP 180
           QVKWVLKKP+GVIA WCY +P ++  VD VF  FY  DS P+W+  RKLV+  Y +IDFP
Sbjct: 121 QVKWVLKKPHGVIAAWCYFLPRISDEVDTVFDQFYYTDSQPYWDSARKLVEKNYRSIDFP 180

Query: 181 FEPVDGADSTGPFDRFVIEKTMDLEGYFSYIRSWSAYQTAKDKGVELLTENVIENFRRAW 240
           F+ VDG D TGPF+ FV E  M  +G  +YI+SWSAYQTAK KGVELL E+V+E F+ AW
Sbjct: 181 FQAVDGVDHTGPFE-FVTETFMSFDGLLTYIKSWSAYQTAKKKGVELLGEDVVEKFKLAW 239

Query: 241 NEDGQSRKVVRFPIYLRIGKVGN 263
            EDG   K  +FP+YLRIG+VGN
Sbjct: 240 GEDGH--KTAKFPVYLRIGRVGN 260

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739908|emb|CBI30090.3| unnamed protein product [Vitis vinifera]

 Score =  349 bits (896), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 160/262 (61%), Positives = 207/262 (79%), Gaps = 2/262 (0%)

Query: 1   MAELFIKQAKQYAETRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIG 60
           M + + K A +Y+E RPNYP ELF+FI SKT   +LAWDVG G+GQAA SL+G+++NV+ 
Sbjct: 1   MGDFYDKLANRYSEIRPNYPPELFQFIASKTPVRDLAWDVGAGNGQAARSLAGMYKNVVA 60

Query: 61  TETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYN 120
           T+ S KQ++ A KLPN+RY+ TSP  +IA++E +VA QS+VDL+TIAQA+HWFDLP+FY 
Sbjct: 61  TDISQKQLDLAPKLPNVRYQQTSPVSTIADIEHDVAPQSSVDLITIAQAVHWFDLPKFYQ 120

Query: 121 QVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQPFYTVDSDPFWEPQRKLVDNKYMTIDFP 180
           Q KWVLKKP+GVIA WCYT  E N SVD+VF  FY +D+ P+W+P R  +D++Y +I+FP
Sbjct: 121 QAKWVLKKPHGVIAAWCYTPAEFNQSVDSVFARFY-IDAKPYWDPARYHLDDRYRSIEFP 179

Query: 181 FEPVDGADSTGPFDRFVIEKTMDLEGYFSYIRSWSAYQTAKDKGVELLTENVIENFRRAW 240
           F PV+G D TGPF +F  E+ MDL+ YF+Y+R+WS YQTA+  GVELLT NVIE+F RAW
Sbjct: 180 FMPVEGEDHTGPF-KFKTERQMDLDSYFAYLRTWSGYQTAQKNGVELLTSNVIEDFERAW 238

Query: 241 NEDGQSRKVVRFPIYLRIGKVG 262
           NEDG  +K+  FPIYLRIGKVG
Sbjct: 239 NEDGGGQKIGVFPIYLRIGKVG 260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482213|ref|XP_003632730.1| PREDICTED: putative methyltransferase DDB_G0268948-like [Vitis vinifera]

 Score =  349 bits (895), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 160/262 (61%), Positives = 207/262 (79%), Gaps = 2/262 (0%)

Query: 1   MAELFIKQAKQYAETRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIG 60
           M + + K A +Y+E RPNYP ELF+FI SKT   +LAWDVG G+GQAA SL+G+++NV+ 
Sbjct: 1   MGDFYDKLANRYSEIRPNYPPELFQFIASKTPVRDLAWDVGAGNGQAARSLAGMYKNVVA 60

Query: 61  TETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYN 120
           T+ S KQ++ A KLPN+RY+ TSP  +IA++E +VA QS+VDL+TIAQA+HWFDLP+FY 
Sbjct: 61  TDISQKQLDLAPKLPNVRYQQTSPVSTIADIEHDVAPQSSVDLITIAQAVHWFDLPKFYQ 120

Query: 121 QVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQPFYTVDSDPFWEPQRKLVDNKYMTIDFP 180
           Q KWVLKKP+GVIA WCYT  E N SVD+VF  FY +D+ P+W+P R  +D++Y +I+FP
Sbjct: 121 QAKWVLKKPHGVIAAWCYTPAEFNQSVDSVFARFY-IDAKPYWDPARYHLDDRYRSIEFP 179

Query: 181 FEPVDGADSTGPFDRFVIEKTMDLEGYFSYIRSWSAYQTAKDKGVELLTENVIENFRRAW 240
           F PV+G D TGPF +F  E+ MDL+ YF+Y+R+WS YQTA+  GVELLT NVIE+F RAW
Sbjct: 180 FMPVEGEDHTGPF-KFKTERQMDLDSYFAYLRTWSGYQTAQKNGVELLTSNVIEDFERAW 238

Query: 241 NEDGQSRKVVRFPIYLRIGKVG 262
           NEDG  +K+  FPIYLRIGKVG
Sbjct: 239 NEDGGGQKIGVFPIYLRIGKVG 260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504712|ref|XP_003521139.1| PREDICTED: LOW QUALITY PROTEIN: putative methyltransferase DDB_G0268948-like [Glycine max]

 Score =  347 bits (889), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 159/245 (64%), Positives = 197/245 (80%), Gaps = 1/245 (0%)

Query: 1   MAELFIKQAKQYAETRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIG 60
           MA+LF+KQAKQYA+ RP+YP +LF+FI SKT +H LAWDVGTGSGQAA SL+ I++NVI 
Sbjct: 1   MAKLFLKQAKQYADARPSYPPQLFQFIASKTPSHNLAWDVGTGSGQAAKSLAAIYKNVIA 60

Query: 61  TETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYN 120
           T+ S KQ+EFA KLPN+RY+ T   MS AELEQ VA++ T+DLVTIAQA+HWFD P FY 
Sbjct: 61  TDASDKQLEFAAKLPNVRYQHTPSTMSTAELEQMVASKGTIDLVTIAQALHWFDRPTFYE 120

Query: 121 QVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQPFYTVDSDPFWEPQRKLVDNKYMTIDFP 180
           QVKWVLKKP+G+IA WCY +P V+ + D VF  FY+ +  P+W+P RK VD+ Y +IDFP
Sbjct: 121 QVKWVLKKPHGIIAAWCYYLPRVSDAFDTVFDQFYSTNVSPYWDPARKWVDDNYRSIDFP 180

Query: 181 FEPVDGADSTGPFDRFVIEKTMDLEGYFSYIRSWSAYQTAKDKGVELLTENVIENFRRAW 240
           FEPVDGAD TGPF+ FV E  MDL+ + +YIRSWSAYQTAK+KGVELL E+V+E F+ AW
Sbjct: 181 FEPVDGADHTGPFE-FVTETMMDLDDFLTYIRSWSAYQTAKEKGVELLAEDVVEKFKLAW 239

Query: 241 NEDGQ 245
            ED +
Sbjct: 240 GEDAK 244

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
TAIR|locus:2040277	269	AT2G41380 [Arabidopsis thalian	0.984	0.970	0.613	1.9e-83
TAIR|locus:2183700	261	AT5G10830 "AT5G10830" [Arabido	0.973	0.988	0.400	1.2e-47
TAIR|locus:2080245	323	AT3G54150 [Arabidopsis thalian	0.969	0.795	0.381	2.4e-44
TAIR|locus:2127550	261	AT4G22530 [Arabidopsis thalian	0.973	0.988	0.353	2.5e-42
TAIR|locus:2098841	261	AT3G61210 "AT3G61210" [Arabido	0.969	0.984	0.347	3.2e-42
DICTYBASE|DDB_G0268948	263	DDB_G0268948 "putative SAM dep	0.894	0.901	0.348	9.8e-32
UNIPROTKB|Q749F1	250	GSU2792 "SAM-dependent methylt	0.913	0.968	0.307	9.1e-29
TIGR_CMR|GSU_2792	250	GSU_2792 "conserved hypothetic	0.913	0.968	0.307	9.1e-29
DICTYBASE|DDB_G0288011	259	DDB_G0288011 "methyltransferas	0.890	0.911	0.335	1.8e-25
CGD|CAL0001588	306	orf19.2468 [Candida albicans (	0.490	0.424	0.356	8.8e-18

TAIR|locus:2040277 AT2G41380 [Arabidopsis thaliana (taxid:3702)]

 Score = 836 (299.3 bits), Expect = 1.9e-83, P = 1.9e-83
 Identities = 162/264 (61%), Positives = 202/264 (76%)

Query:     1 MAELFIKQAKQYAETRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIG 60
             MA+LFIKQA+QYA  RP+YP +LF++I SKT  H+LAWDVG GSGQA+ SL+GI++NVI 
Sbjct:     1 MAKLFIKQAEQYAAARPSYPTKLFEYIASKTPCHDLAWDVGAGSGQASRSLAGIYKNVIA 60

Query:    61 TETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYN 120
             T+TS KQ+EFA KLPN+RYE+T P MS +E+E+ VA +S+VDLVT+AQA+HWFDL  FY+
Sbjct:    61 TDTSSKQLEFAAKLPNVRYEITPPTMSSSEIEKLVAPESSVDLVTVAQALHWFDLTNFYS 120

Query:   121 QVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQPFYTVDSDPFWEPQRKLVDNKYMTIDFP 180
              VK VLKKPNGVIA WCYT PEVN +VD VFQ FY     P W+  R+LV++ Y  I+FP
Sbjct:   121 NVKHVLKKPNGVIAAWCYTNPEVNDAVDKVFQRFYDEKLGPHWDLARRLVEDGYRGIEFP 180

Query:   181 FEPVDGADSTGP--FD-RFVIEKTMDLEGYFSYIRSWSAYQTAKDKGVELLTENVIENFR 237
             FE VD  +ST    F  RFV EK M  E Y +Y+RS SAYQTAK+KG+ELLT  +   F 
Sbjct:   181 FEKVDNDESTESQSFPVRFVTEKEMVFEEYMTYLRSSSAYQTAKEKGLELLTAEMEGEFA 240

Query:   238 RAWNEDGQSRKVVRFPIYLRIGKV 261
              +W EDG+ +KVVR+PIYL IG+V
Sbjct:   241 GSWKEDGKEKKVVRYPIYLLIGRV 264

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005829 "cytosol" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2183700 AT5G10830 "AT5G10830" [Arabidopsis thaliana (taxid:3702)]

 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 105/262 (40%), Positives = 151/262 (57%)

Query:     1 MAELFIKQAKQYAETRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIG 60
             MA LF KQA  Y + RPNYP E F  +   T +H LAWD  TG+GQAA +++  +E+V+ 
Sbjct:     1 MAGLFDKQADLYLDARPNYPSEWFSKLADLTDHHGLAWDAATGNGQAALAVAEHYESVVA 60

Query:    61 TETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYN 120
             T+ S  Q++ AT  P I Y  T  +M+  EL + +  +++VDL+T+AQ +HWFDLP+FY+
Sbjct:    61 TDVSESQLKLATPHPKINYRHTPTSMTDDELVELIGGENSVDLITVAQGVHWFDLPRFYS 120

Query:   121 QVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQPFYTVDSDPFWE-PQRKLVDNKYMTIDF 179
                 +L+KP G+IA W Y    V+   DAV    +     PFW+ P  + + + Y  + F
Sbjct:   121 VATRLLRKPGGIIAVWGYNDVIVSPEFDAVQYRLHATTL-PFWKYPYIQHIFDSYEALPF 179

Query:   180 PFEPVDGADSTGPFDRFVIEKTMDLEGYFSYIRSWSAYQTAKDKGVELLTENVIENFRRA 239
             PFE V G  S G   +  + KT   EG     +SWSA  TA++KGVELL E+++     A
Sbjct:   180 PFENV-GMGSEGEPLKLEMPKTTSFEGIIRMFKSWSAIVTAREKGVELLPESLVRELETA 238

Query:   240 WNEDGQSRKVVRFPIYLRIGKV 261
             W      R VV +  ++  GKV
Sbjct:   239 WGGSDLVRSVV-YKAFMIAGKV 259

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

TAIR|locus:2080245 AT3G54150 [Arabidopsis thaliana (taxid:3702)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 100/262 (38%), Positives = 151/262 (57%)

Query:     1 MAELFIKQAKQYAETRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIG 60
             MA L  K+A+ Y + RP YP + FK I ++T +H+ AWDVGTG+GQAA  L   +ENV+ 
Sbjct:     1 MAALSEKEAEAYLDARPRYPIDWFKKIAARTQDHKFAWDVGTGNGQAAIGLVEHYENVVA 60

Query:    61 TETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYN 120
             T+ +  Q++ A K   I Y  T   +S  E+   +  +++VDL+  AQA+H+FDL  FYN
Sbjct:    61 TDINEAQLQRAIKHSRISYHHTPTTISEDEMVDLLGGENSVDLIVAAQAVHFFDLNVFYN 120

Query:   121 QVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQPFYTVDSD-PFWEPQRKLVDNKYMTIDF 179
               K VL+K  G+IA W Y    ++  +D + +    VDS  PF  P   L  + Y T+ F
Sbjct:   121 VAKRVLRKEGGLIAVWVYNDIIISHEIDPIMKRL--VDSTLPFRTPIMNLAFDGYKTLTF 178

Query:   180 PFEPVDGADSTGPFDRFVIEKTMDLEGYFSYIRSWSAYQTAKDKGVELLTENVIENFRRA 239
             PFE + G  S G      I   + L+G+  ++RSW     AK+KGVEL+ E++I  F  A
Sbjct:   179 PFETI-GMGSEGKPITLDIPHKLSLKGFIGFLRSWQPAMKAKEKGVELINEDLITKFEEA 237

Query:   240 WNEDGQSRKVVRFPIYLRIGKV 261
             W ++ Q + V  +  ++ +GK+
Sbjct:   238 WGDETQVKDVF-YKAHMIVGKI 258

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2127550 AT4G22530 [Arabidopsis thaliana (taxid:3702)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 93/263 (35%), Positives = 148/263 (56%)

Query:     1 MAELFIKQAKQYAETRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIG 60
             M+ ++  QA  Y + RP YP + +  + + +  H LAWD GTG+GQAA  ++  +E V+ 
Sbjct:     1 MSGVYDSQADIYLDARPTYPADWYSKLAALSHRHNLAWDAGTGNGQAAIGIAEHYERVVA 60

Query:    61 TETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYN 120
             T+ S   +      P + Y  T  +M+  E+   +  +++VDL+T+A A+HWFDLP+FY 
Sbjct:    61 TDVSETMLNLGKPHPKVTYHHTPSSMTEDEMVDLIGGENSVDLITVATAVHWFDLPRFYA 120

Query:   121 QVKWVLKKPNGVIATWCY-TVPEVNVSVDAVFQPFYTVDSDPFWE-PQRKLVDNKYMTID 178
                 +L+KP G+IA W Y T   VN   D+V   F   ++ P+ + P+ +   + Y T+ 
Sbjct:   121 IANRLLRKPGGIIAVWSYNTDMVVNPEFDSVMTRFIA-ETLPYCKFPESQYFLDGYKTLP 179

Query:   179 FPFEPVDGADSTGPFDRFVIEKTMDLEGYFSYIRSWSAYQTAKDKGVELLTENVIENFRR 238
             FPFE V G  S G      ++KT+  EG+   +RSWSA   AK+KGV+LL++NV++    
Sbjct:   180 FPFESV-GLGSEGKPMELEMKKTVSFEGFLRMLRSWSAVGAAKEKGVDLLSDNVVKELET 238

Query:   239 AWNEDGQSRKVVRFPIYLRIGKV 261
             AW      R +V +  ++  G V
Sbjct:   239 AWGGYELVRTIV-YKTFMLAGTV 260

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

TAIR|locus:2098841 AT3G61210 "AT3G61210" [Arabidopsis thaliana (taxid:3702)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 91/262 (34%), Positives = 150/262 (57%)

Query:     1 MAELFIKQAKQYAETRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIG 60
             +A L  KQA +Y   RP YP   +K +  +T+NH++AWDVGTG+GQAA  ++  ++ V+ 
Sbjct:     4 LAALSGKQADEYLNARPKYPTIWYKVLAGRTSNHKVAWDVGTGNGQAAIGVAEYYQKVVA 63

Query:    61 TETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYN 120
             T+ +  Q++ A K P + Y  T  +MS  +L   +  ++++D++  AQA+H+FDL +FY 
Sbjct:    64 TDINESQLQRAMKHPKVTYYHTPSSMSDDDLVTLLGGENSIDIIIAAQALHYFDLKRFYP 123

Query:   121 QVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQPFYTVDSD-PFWEPQRKLVDNKYMTIDF 179
              VK VL+K  G+I  W Y    +   VD++ +    VDS  P+  P   L  + Y TI+F
Sbjct:   124 IVKRVLRKQGGIIVVWVYNDLIITPKVDSIMKRL--VDSTLPYRNPTMNLAFDGYKTIEF 181

Query:   180 PFEPVDGADSTGPFDRFVIEKTMDLEGYFSYIRSWSAYQTAKDKGVELLTENVIENFRRA 239
             PF+ +       P     I   + L+G+  +++SW     AK++G +LLT  +I+ F+ A
Sbjct:   182 PFKNIRMGTQGRP-KALDIPHMLSLDGFLGFLKSWQPLVKAKEQGEDLLTSYMIDEFKEA 240

Query:   240 WNEDGQSRKVVRFPIYLRIGKV 261
             W +D Q  K V +  ++  GK+
Sbjct:   241 WGDDEQV-KDVHYKAFMLAGKL 261

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

DICTYBASE|DDB_G0268948 DDB_G0268948 "putative SAM dependent methyltransferase" [Dictyostelium discoideum (taxid:44689)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 90/258 (34%), Positives = 133/258 (51%)

Query:     9 AKQYAETRPNYPEELFKFITSKTTN-HELAWDVGTGSGQAAASLSGIFENVIGTETSPKQ 67
             +K Y   RP Y +EL+  I S      +LA D+G GSGQA   L+  F+ VIG E S  Q
Sbjct:    19 SKSYKNFRPTYNDELYSIIDSHCDEKRDLAIDIGAGSGQATVRLAKYFKKVIGFEPSQGQ 78

Query:    68 IEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLK 127
             IE A K  N+ Y L S A  I +L        +VDL+T+AQA HWF+LP FY + K +L+
Sbjct:    79 IENAEKTDNVEYRL-SAAEKI-DLPSG-----SVDLITVAQAAHWFNLPVFYEESKRLLR 131

Query:   128 KPNGVIATWCYTVPEVNVSVDA--VFQP-FYTVDSDPFWEPQRKLVDNKYMTIDFPFEPV 184
             + NG +  W Y + ++  + DA  V +  +Y    D +W P+RK +D++Y+ I   FE  
Sbjct:   132 E-NGSLIIWSYGLMKITNNNDAQVVHEKHYYETIGDQYWAPERKYIDDEYVDIKPSFENT 190

Query:   185 DGADSTGPFDRFVIEKTMDLEGYFSYIRSWSAYQTAKDKGVELLTENVIENFRRAWNE-D 243
                  + P       K+M +     Y  SWS Y      G + +   + E   +A+   D
Sbjct:   191 TRKTISLP-------KSMSINDMIGYYSSWSGYAAFIKAGNKDVLPEIKETLLKAYKTTD 243

Query:   244 GQSRKV-VRFPIYLRIGK 260
             G S+ + V FP+Y+ + K
Sbjct:   244 GDSKLIDVNFPVYMILSK 261

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0032259 "methylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q749F1 GSU2792 "SAM-dependent methyltransferase, putative" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 80/260 (30%), Positives = 128/260 (49%)

Query:     3 ELFIKQAKQYAETRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTE 62
             + F   +  Y   RP YP+ LF ++       + A D G G+GQA+  L+  F  V   +
Sbjct:     7 DYFSDTSDAYRTYRPEYPDALFAWLAGLPPRRDAALDCGCGTGQASVVLASYFPRVYAVD 66

Query:    63 TSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQV 122
              S  QI  A     + Y + +PA      EQ     ++VDLV  AQA+HWFD  +FY +V
Sbjct:    67 PSAGQIASAVPHEGVVYRV-APA------EQTGLPGASVDLVVAAQALHWFDFDRFYPEV 119

Query:   123 KWVLKKPNGVIATWCYTVPEVNVSVDAVFQPFYTVDSDPFWEPQRKLVDNKYMTIDFPFE 182
             + V  +P  V A + Y +  ++  +D +   FY      +W P+R  VD+ Y +I FPF 
Sbjct:   120 RRV-GRPGSVFAAFSYGLLSIDADLDRIIGRFYREVIGRYWPPERAHVDDGYRSIPFPFP 178

Query:   183 PVDGADSTGPFDRFVIEKTMDLEGYFSYIRSWSAYQTAKDK-GVELLTENVIENFRRAWN 241
              +    +  PF    +E   +LE    Y+ +WSA +  + + G + L E +    R AW 
Sbjct:   179 EI----AAPPF---AMEARWELEHLLGYLATWSAVREYRQRLGTDPLPE-LAREVRDAWG 230

Query:   242 EDGQSRKVVRFPIYLRIGKV 261
                + R +V +P+ LR+G++
Sbjct:   231 IPEEGRTIV-WPLALRVGRI 249

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_2792 GSU_2792 "conserved hypothetical protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 80/260 (30%), Positives = 128/260 (49%)

Query:     3 ELFIKQAKQYAETRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTE 62
             + F   +  Y   RP YP+ LF ++       + A D G G+GQA+  L+  F  V   +
Sbjct:     7 DYFSDTSDAYRTYRPEYPDALFAWLAGLPPRRDAALDCGCGTGQASVVLASYFPRVYAVD 66

Query:    63 TSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQV 122
              S  QI  A     + Y + +PA      EQ     ++VDLV  AQA+HWFD  +FY +V
Sbjct:    67 PSAGQIASAVPHEGVVYRV-APA------EQTGLPGASVDLVVAAQALHWFDFDRFYPEV 119

Query:   123 KWVLKKPNGVIATWCYTVPEVNVSVDAVFQPFYTVDSDPFWEPQRKLVDNKYMTIDFPFE 182
             + V  +P  V A + Y +  ++  +D +   FY      +W P+R  VD+ Y +I FPF 
Sbjct:   120 RRV-GRPGSVFAAFSYGLLSIDADLDRIIGRFYREVIGRYWPPERAHVDDGYRSIPFPFP 178

Query:   183 PVDGADSTGPFDRFVIEKTMDLEGYFSYIRSWSAYQTAKDK-GVELLTENVIENFRRAWN 241
              +    +  PF    +E   +LE    Y+ +WSA +  + + G + L E +    R AW 
Sbjct:   179 EI----AAPPF---AMEARWELEHLLGYLATWSAVREYRQRLGTDPLPE-LAREVRDAWG 230

Query:   242 EDGQSRKVVRFPIYLRIGKV 261
                + R +V +P+ LR+G++
Sbjct:   231 IPEEGRTIV-WPLALRVGRI 249

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0288011 DDB_G0288011 "methyltransferase type 11 domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 86/256 (33%), Positives = 124/256 (48%)

Query:    10 KQYAETRPNYPEELFKFITSKT-TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQI 68
             K Y   RP Y EEL+  I S   +  +LA D G GSGQA   L+  F+ VIG E S  QI
Sbjct:    18 KSYKTFRPTYTEELYSIIDSYCDSKRDLAIDCGCGSGQATVKLAKYFKKVIGFEPSQGQI 77

Query:    69 EFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKK 128
             E A K  N+ + L SPA  I +L        +VDL+T+A A+HWFDLP FY + K +L+ 
Sbjct:    78 ENAVKTENVDFRL-SPAEKI-DLPSG-----SVDLITVATAVHWFDLPVFYQEAKRLLRD 130

Query:   129 PNGVIATWCYTVPEV--NVSVDAVFQPFYTVDSDPFWEPQRKLVDNKYMTIDFPFEPVDG 186
              NG +  +     ++  N     +   F +     +W P  K V + Y+ I  PFE V+ 
Sbjct:   131 -NGSLILFTTGFIQILNNDEAQKINDNFRSGTLGDYWAPIVKYVIDGYVDIKPPFENVER 189

Query:   187 ADSTGPFDRFVIEKTMDLEGYFSYIRSWSAYQTAKDKGVELLTENVIENFRRAWNEDGQS 246
                + P     +    D+ G +S   SWS Y +    G   +   V EN   A+     +
Sbjct:   190 KTISLP----KLMSVNDVIGIYS---SWSGYASFIKAGNNDVLPGVKENLMSAFKTTDPN 242

Query:   247 RKVVR--FPIYLRIGK 260
              ++V   FP+Y+ + K
Sbjct:   243 AEIVETNFPVYMVLSK 258

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

CGD|CAL0001588 orf19.2468 [Candida albicans (taxid:5476)]

 Score = 181 (68.8 bits), Expect = 8.8e-18, Sum P(2) = 8.8e-18
 Identities = 51/143 (35%), Positives = 75/143 (52%)

Query:     9 AKQYAETRPNYPE----ELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETS 64
             ++ Y ++RPNYP+    EL K+ T K    +LA D+G GSG  A  L   F++VIGT+ S
Sbjct:    11 SQHYDDSRPNYPQPFYKELIKYHTKKGDT-KLAIDIGCGSGFVAFQLVNYFDSVIGTDPS 69

Query:    65 PKQIEFA-TKLPNIRYELTSPAM-----SIAELEQNVAAQSTVDLVTIAQAMHWFDLPQF 118
                IE   + +P   +   SP         AE       +++VDL+T A+  HW +  QF
Sbjct:    70 STMIEQCNSNIPP-EWLRNSPKKISFMKGTAEHHPVSIKENSVDLITGAECCHWVNHKQF 128

Query:   119 YNQVKWVLKKPNGVIATWCYTVP 141
             +++   VLK  NG +A W Y  P
Sbjct:   129 FDESYRVLKS-NGTLAYWFYKDP 150

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0046547 "trans-aconitate 3-methyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691
4th Layer	2.1.1.8	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0024027701 hypothetical protein (263 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	265
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	5e-10
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	7e-09
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	1e-05
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	1e-04
COG0500	257	COG0500, SmtA, SAM-dependent methyltransferases [S	9e-04
TIGR02072	240	TIGR02072, BioC, biotin biosynthesis protein BioC	0.002
TIGR01983	224	TIGR01983, UbiG, ubiquinone biosynthesis O-methylt	0.003

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 55.0 bits (133), Expect = 5e-10
 Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 10/98 (10%)

Query: 39  DVGTGSGQAAASLSG-IFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAA 97
           DVG G+G  A +L+      V G + SP+ +  A K    ++ +        +L      
Sbjct: 2   DVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKRAPRKFVV----GDAEDLP---FP 54

Query: 98  QSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIA 134
             + D+V  +  +H   D  +   ++  VL KP G + 
Sbjct: 55  DESFDVVVSSLVLHHLPDPERALREIARVL-KPGGKLV 91

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 53.2 bits (128), Expect = 7e-09
 Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 15/108 (13%)

Query: 38  WDVGTGSG---QAAASLSGIFENVIGTETSPKQIEFATK------LPNIRYELTSPAMSI 88
            D+G G+G      A   G    V+G + S + IE A +        N+ +        I
Sbjct: 8   LDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFI----QGDI 63

Query: 89  AELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIAT 135
            EL Q     ++ D+V   + ++   D  +   ++  VL KP GV+  
Sbjct: 64  EELPQLQLEDNSFDVVISNEVLNHLPDPDKVLEEIIRVL-KPGGVLIV 110

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 16/112 (14%)

Query: 38  WDVGTGSGQAAASL-SGIFENVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAE 90
            D+G G+G  A +L SG    V G + SP  +E A K        N+   L   A  +  
Sbjct: 3   LDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEV-LKGDAEELPP 61

Query: 91  LEQNVAAQSTVDLVTIAQAMHWF--DLPQFYNQVKWVLKKPNGVIATWCYTV 140
                    + D++     +H    DL +F  + + +L KP GV+       
Sbjct: 62  EADE-----SFDVIISDPPLHHLVEDLARFLEEARRLL-KPGGVLVLTLVLA 107

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 18/104 (17%)

Query: 38  WDVGTGSGQAAASLSGIFEN--VIGTETSPKQIEFATK------LPNIRYELTSPAMSIA 89
            D+G G+G  A  L+ +F    V G + SP+ +E A +       P I +          
Sbjct: 6   LDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQ-------G 58

Query: 90  ELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVI 133
           +    +      D V I        L +  + +  +L KP G +
Sbjct: 59  DAPDALDLLEGFDAVFIGGGGGD--LLELLDALASLL-KPGGRL 99

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

 Score = 39.5 bits (89), Expect = 9e-04
 Identities = 26/186 (13%), Positives = 58/186 (31%), Gaps = 15/186 (8%)

Query: 39  DVGTGSGQAA--ASLSGIFENVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAE 90
           D+G G+G+ A  A L G    V+G + SP+ +  A        L  + + +         
Sbjct: 54  DIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVV----ADALG 109

Query: 91  LEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAV 150
                   ++ DLV     +H     +   ++  VLK    ++ +       +   + A+
Sbjct: 110 GVLPFEDSASFDLVISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRDGLLEGRLAAL 169

Query: 151 FQPFYTVDSDPFWEPQRKLVDNKYMTIDFPFEPVDGADSTGPFDRFVIEKTMDLEGYFSY 210
                 V            ++          E + G       +R  + + ++       
Sbjct: 170 LGFGDPVLERGDIL---LELEALLRLELLDLEELLGLLGELELERGGLARLLEELRLLLE 226

Query: 211 IRSWSA 216
           + +   
Sbjct: 227 LLALGL 232

Length = 257

>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 16/129 (12%)

Query: 39  DVGTGSGQAAASL--SGIFENVIGTETSPKQIEFATKL--PNIRYELTSPAMSIAELEQN 94
           D+G G+G    +L         I  + S   +  A      N+++          + E+ 
Sbjct: 40  DIGCGTGYLTRALLKRFPQAEFIANDISAGMLAQAKTKLSENVQFIC-------GDAEKL 92

Query: 95  VAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIA--TWCY-TVPEVNVSVDAV 150
               S+ DL+    A+ W  DL Q  +++  VL KP G++A  T+   T+ E+  S    
Sbjct: 93  PLEDSSFDLIVSNLALQWCDDLSQALSELARVL-KPGGLLAFSTFGPGTLHELRQSFGQH 151

Query: 151 FQPFYTVDS 159
              + ++D 
Sbjct: 152 GLRYLSLDE 160

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240

>gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 30/118 (25%), Positives = 45/118 (38%), Gaps = 23/118 (19%)

Query: 39  DVGTGSGQAAASLSGIFENVIGTETSPKQIEFAT------KLPNIRYELTSPAMSIAELE 92
           DVG G G  +  L+ +  NV G + S + IE A        L  I Y  T    S+ +L 
Sbjct: 51  DVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCT----SVEDLA 106

Query: 93  QNVAAQSTVDLVTIAQAM-HWFDLPQFYNQVKWVLKKPNG--VIAT-------WCYTV 140
           +      + D+VT  + + H  D   F       L KP G    +T       +   +
Sbjct: 107 E--KGAKSFDVVTCMEVLEHVPDPQAFIRAC-AQLLKPGGILFFSTINRTPKSYLLAI 161

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 224

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	265
KOG3010	261	consensus Methyltransferase [General function pred	100.0
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.92
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.91
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.88
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.88
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.86
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.85
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.84
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.83
PRK05785	226	hypothetical protein; Provisional	99.83
PLN02244	340	tocopherol O-methyltransferase	99.82
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.8
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.78
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.77
PRK08317	241	hypothetical protein; Provisional	99.77
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.76
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.76
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.76
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.75
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.7
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.7
PRK11207	197	tellurite resistance protein TehB; Provisional	99.7
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.7
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.7
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.68
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.67
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.67
PLN02490	340	MPBQ/MSBQ methyltransferase	99.67
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.66
KOG4300	252	consensus Predicted methyltransferase [General fun	99.66
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.65
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.64
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.64
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.63
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.63
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.63
PLN02336	475	phosphoethanolamine N-methyltransferase	99.62
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.62
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.62
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.62
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.59
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.59
PRK06922	677	hypothetical protein; Provisional	99.58
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.58
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.57
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.57
PRK12335	287	tellurite resistance protein TehB; Provisional	99.56
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.56
PRK06202	232	hypothetical protein; Provisional	99.55
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.55
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.54
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.54
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.53
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.52
PLN02336	475	phosphoethanolamine N-methyltransferase	99.52
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.5
KOG2940	325	consensus Predicted methyltransferase [General fun	99.5
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.49
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.49
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.49
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.48
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.48
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.48
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.47
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.47
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.46
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.46
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.45
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.45
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.45
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.45
PRK04266	226	fibrillarin; Provisional	99.44
PTZ00146	293	fibrillarin; Provisional	99.44
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.44
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.44
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.43
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.42
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.41
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.41
PRK14967	223	putative methyltransferase; Provisional	99.41
TIGR00438	188	rrmJ cell division protein FtsJ.	99.4
PLN03075	296	nicotianamine synthase; Provisional	99.39
TIGR03438	301	probable methyltransferase. This model represents	99.39
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.38
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.38
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.38
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.37
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.37
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.37
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.35
PRK00811	283	spermidine synthase; Provisional	99.33
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.31
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.31
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.31
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.3
PRK07402	196	precorrin-6B methylase; Provisional	99.29
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.29
PHA03411	279	putative methyltransferase; Provisional	99.29
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.29
PRK01581	374	speE spermidine synthase; Validated	99.28
PRK04457	262	spermidine synthase; Provisional	99.28
COG4123	248	Predicted O-methyltransferase [General function pr	99.27
PRK14968	188	putative methyltransferase; Provisional	99.27
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.25
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.24
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.23
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.22
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	99.22
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.22
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.21
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.2
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.2
PRK03612	521	spermidine synthase; Provisional	99.19
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	99.19
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.18
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.18
PHA03412	241	putative methyltransferase; Provisional	99.17
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.17
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	99.17
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	99.16
PLN02366	308	spermidine synthase	99.16
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.16
KOG2899	288	consensus Predicted methyltransferase [General fun	99.15
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.14
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.12
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	99.12
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.1
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.1
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.1
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.1
KOG2361	264	consensus Predicted methyltransferase [General fun	99.09
KOG1271	227	consensus Methyltransferases [General function pre	99.08
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.08
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	99.06
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.05
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.05
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.05
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.04
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.03
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	99.03
COG2890	280	HemK Methylase of polypeptide chain release factor	99.01
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	99.0
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.99
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.99
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.97
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	98.97
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.97
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.96
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.96
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.95
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.93
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.92
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.9
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.89
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.89
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.88
PRK00536	262	speE spermidine synthase; Provisional	98.88
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.88
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	98.87
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.85
PLN02823	336	spermine synthase	98.83
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.83
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.83
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.83
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.83
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.81
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.8
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.79
KOG2904	328	consensus Predicted methyltransferase [General fun	98.79
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.75
COG4122	219	Predicted O-methyltransferase [General function pr	98.75
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.74
PRK04148	134	hypothetical protein; Provisional	98.71
KOG1331	293	consensus Predicted methyltransferase [General fun	98.71
PLN02476	278	O-methyltransferase	98.7
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.7
PLN02672	1082	methionine S-methyltransferase	98.7
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.68
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.67
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.66
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.66
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.66
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.65
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.64
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	98.63
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.61
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.59
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.58
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.55
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.53
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.53
COG2521	287	Predicted archaeal methyltransferase [General func	98.51
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.48
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	98.46
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.46
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.45
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.45
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	98.44
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.42
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	98.38
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.37
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.37
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.36
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.36
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.35
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.34
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	98.33
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.32
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.31
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.26
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.23
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.23
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.19
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.12
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	98.11
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.08
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	98.07
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	98.07
COG2520	341	Predicted methyltransferase [General function pred	98.05
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	97.97
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.96
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	97.95
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	97.91
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	97.9
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.89
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	97.89
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	97.89
COG4262	508	Predicted spermidine synthase with an N-terminal m	97.87
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	97.87
COG4076	252	Predicted RNA methylase [General function predicti	97.87
KOG2352	482	consensus Predicted spermine/spermidine synthase [	97.81
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	97.8
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	97.79
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	97.73
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	97.72
COG3897	218	Predicted methyltransferase [General function pred	97.66
PF13679	141	Methyltransf_32: Methyltransferase domain	97.49
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.47
KOG3115	249	consensus Methyltransferase-like protein [General	97.45
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.45
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	97.43
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	97.4
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	97.39
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	97.29
KOG3201	201	consensus Uncharacterized conserved protein [Funct	97.22
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.21
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	97.17
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	97.16
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.14
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	97.11
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	97.08
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	97.07
KOG2730	263	consensus Methylase [General function prediction o	97.07
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	97.02
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	96.99
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	96.97
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	96.87
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	96.83
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	96.81
PLN02668	386	indole-3-acetate carboxyl methyltransferase	96.8
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	96.78
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	96.76
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	96.74
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	96.68
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	96.68
COG4798	238	Predicted methyltransferase [General function pred	96.68
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	96.63
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	96.61
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	96.6
PRK10742	250	putative methyltransferase; Provisional	96.53
PRK11524	284	putative methyltransferase; Provisional	96.49
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	96.34
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	96.3
PHA01634	156	hypothetical protein	96.3
PRK13699	227	putative methylase; Provisional	96.19
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	96.16
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	96.14
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	95.96
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	95.89
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	95.89
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	95.81
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	95.79
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	95.7
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	95.61
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	95.58
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	95.53
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	95.52
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	95.49
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	95.45
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	95.3
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	95.26
KOG1227	351	consensus Putative methyltransferase [General func	95.26
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	95.25
KOG1501	636	consensus Arginine N-methyltransferase [General fu	95.22
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	95.19
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	95.18
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	95.16
COG2384	226	Predicted SAM-dependent methyltransferase [General	95.1
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	95.03
PTZ00357	1072	methyltransferase; Provisional	94.72
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	94.55
PLN02740	381	Alcohol dehydrogenase-like	94.54
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	94.43
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	94.38
KOG2920	282	consensus Predicted methyltransferase [General fun	94.27
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	94.26
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	94.24
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	94.12
KOG4058	199	consensus Uncharacterized conserved protein [Funct	94.12
KOG2539	491	consensus Mitochondrial/chloroplast ribosome small	94.05
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	94.0
COG0286	489	HsdM Type I restriction-modification system methyl	93.92
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	93.91
COG4301	321	Uncharacterized conserved protein [Function unknow	93.84
PLN02827	378	Alcohol dehydrogenase-like	93.73
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	93.65
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	93.61
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	93.57
PLN02586	360	probable cinnamyl alcohol dehydrogenase	93.4
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	93.12
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	93.1
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	93.08
COG1255	129	Uncharacterized protein conserved in archaea [Func	92.91
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	92.82
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	92.76
KOG2671	421	consensus Putative RNA methylase [Replication, rec	92.66
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	92.65
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	92.63
PLN02178	375	cinnamyl-alcohol dehydrogenase	92.61
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	92.57
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	92.35
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	92.27
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	92.23
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	92.03
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	91.94
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	91.75
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	91.7
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	91.6
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	91.5
PF03269	177	DUF268: Caenorhabditis protein of unknown function	91.47
KOG2352	482	consensus Predicted spermine/spermidine synthase [	91.46
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	91.43
COG3129	292	Predicted SAM-dependent methyltransferase [General	91.39
PF12692	160	Methyltransf_17: S-adenosyl-L-methionine methyltra	91.28
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	91.24
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	91.21
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	91.06
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	91.01
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	90.87
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	90.85
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	90.73
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	90.71
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	90.67
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	90.66
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	90.58
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	90.57
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	90.48
PLN02514	357	cinnamyl-alcohol dehydrogenase	90.2
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	90.08
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	90.02
PRK11524	284	putative methyltransferase; Provisional	89.7
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	89.64
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	89.51
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	89.41
COG1565	370	Uncharacterized conserved protein [Function unknow	89.16
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	89.14
PRK13699	227	putative methylase; Provisional	89.13
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	88.68
PRK10083	339	putative oxidoreductase; Provisional	88.61
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	88.6
PRK07417	279	arogenate dehydrogenase; Reviewed	88.53
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	88.28
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	88.22
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	88.19
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	87.93
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	87.93
COG4017	254	Uncharacterized protein conserved in archaea [Func	87.56
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	87.48
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	87.43
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	87.28
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	87.08
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	86.91
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	86.88
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	86.67
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	86.58
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	86.39
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	86.28
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	86.2
COG2933	358	Predicted SAM-dependent methyltransferase [General	86.13
PRK10458	467	DNA cytosine methylase; Provisional	85.8
COG0569	225	TrkA K+ transport systems, NAD-binding component [	85.78
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	85.69
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	85.67
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	85.62
PRK10669	558	putative cation:proton antiport protein; Provision	85.55
PF03514	374	GRAS: GRAS domain family; InterPro: IPR005202 Sequ	85.29
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	84.87
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	84.84
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	84.61
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	84.54
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	84.4
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	84.31
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	84.15
KOG3924	419	consensus Putative protein methyltransferase invol	84.01
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	83.92
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	83.77
PF08484	160	Methyltransf_14: C-methyltransferase C-terminal do	83.47
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	83.47
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	83.45
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	83.45
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	83.0
PRK03562	621	glutathione-regulated potassium-efflux system prot	82.88
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	82.87
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	82.71
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	82.7
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	82.68
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	82.63
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	82.52
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	82.31
PRK09496	453	trkA potassium transporter peripheral membrane com	82.21
PRK08306	296	dipicolinate synthase subunit A; Reviewed	82.12
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	82.1
PRK08177	225	short chain dehydrogenase; Provisional	82.1
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	82.08
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	82.04
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	82.02
PLN02702	364	L-idonate 5-dehydrogenase	81.98
PTZ00354	334	alcohol dehydrogenase; Provisional	81.93
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	81.54
PRK03659	601	glutathione-regulated potassium-efflux system prot	81.03
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	80.9
KOG2078	495	consensus tRNA modification enzyme [RNA processing	80.61
PF02086	260	MethyltransfD12: D12 class N6 adenine-specific DNA	80.33
COG0863	302	DNA modification methylase [DNA replication, recom	80.11

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=100.00  E-value=2.9e-44  Score=286.35  Aligned_cols=259  Identities=42%  Similarity=0.748  Sum_probs=228.5

Q ss_pred             ChhHHHHHHHHHhhhCCCCcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEE
Q 024647            1 MAELFIKQAKQYAETRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYE   80 (265)
Q Consensus         1 ~~~~f~~~a~~Y~~~rp~y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~   80 (265)
                      |+.+|..+|+.|..+||.||.+.+..+.........++|+|||+|+.++.+++++.+|+|+|+|+.|++.|++.+++...
T Consensus         1 ~~~~~~~~a~~Y~~ARP~YPtdw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~   80 (261)
T KOG3010|consen    1 MAKLFDKQAADYLNARPSYPTDWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYC   80 (261)
T ss_pred             CcccccccHHHHhhcCCCCcHHHHHHHHhhCCCcceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccc
Confidence            78899999999999999999999999998877666899999999999999999999999999999999999998888887


Q ss_pred             ecCCccchhhhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecC-CCCCChHHHHhhcccccCCC
Q 024647           81 LTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT-VPEVNVSVDAVFQPFYTVDS  159 (265)
Q Consensus        81 ~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~-~~~~~~~~~~~~~~~~~~~~  159 (265)
                      ..+..+...++..+--.++++|+|+|++|+||||.+.+++++.|+||++||++++|+++ +....++...++.+++. ..
T Consensus        81 ~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~-~~  159 (261)
T KOG3010|consen   81 HTPSTMSSDEMVDLLGGEESVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYD-ST  159 (261)
T ss_pred             cCCccccccccccccCCCcceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhh-cc
Confidence            77766665555555445889999999999999999999999999999777799999999 44558999999998887 68


Q ss_pred             CCCcc-hhhhhhhhccCCCCCCCCCCCCCCCCCCCccceeeeccCHHHHHHHHHhhhHHHHHHHhCCccchHHHHHHHHH
Q 024647          160 DPFWE-PQRKLVDNKYMTIDFPFEPVDGADSTGPFDRFVIEKTMDLEGYFSYIRSWSAYQTAKDKGVELLTENVIENFRR  238 (265)
Q Consensus       160 ~~~~~-~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~l~~~~~~~l~~  238 (265)
                      .|||. |...++-+.|..+.|||+.+.-.-...+. .+.+...++++++.++++|||.+..+++++.+++.+.++.++++
T Consensus       160 ~p~~r~~~~n~~fdgy~~~~F~~e~v~~~s~~~~~-~l~~~~~lsl~~F~~~~rsws~~~~akek~~e~i~~~~I~e~~~  238 (261)
T KOG3010|consen  160 LPYWRSPLRNLLFDGYKTIEFPFESVGMGSQGKPK-TLEIPHTLSLEGFSGFLRSWSAYKEAKEKGLELIADIFIPEFEE  238 (261)
T ss_pred             CchhhhHHHHhhccccccccccccccCCCCCCCce-eehhhHHHHHHHHHHHHhCcHHHHHHHhcChHHHHHHHHHHHHh
Confidence            88865 77888889999999999988643222233 78889999999999999999999999999999999999999999


Q ss_pred             HhccCCCccEEEEEeeEEEEeecC
Q 024647          239 AWNEDGQSRKVVRFPIYLRIGKVG  262 (265)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~ark~  262 (265)
                      .|+++. ....|.|.+++..||++
T Consensus       239 ~~~~~~-~~~~V~y~tf~~~gk~~  261 (261)
T KOG3010|consen  239 AWGEDN-LVKTVVYSTFMLLGKVR  261 (261)
T ss_pred             hccccc-ceeEEEeeeeeeecccC
Confidence            999874 46899999999999974

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.92  E-value=2.2e-23  Score=175.20  Aligned_cols=233  Identities=17%  Similarity=0.260  Sum_probs=158.7

Q ss_pred             hhHHHHHHHHHhhhCCCCcHHHHHHHHhhCC--CCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC-CCce
Q 024647            2 AELFIKQAKQYAETRPNYPEELFKFITSKTT--NHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL-PNIR   78 (265)
Q Consensus         2 ~~~f~~~a~~Y~~~rp~y~~~l~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-~~~~   78 (265)
                      ++.|+++|.+|++.... .....+.+.+..+  +..+|||+|||+|.++..+++.+.+|+++|+|+.|++.+++. ....
T Consensus        10 ~~~F~~aa~~Y~~~~~~-q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~~~~   88 (251)
T PRK10258         10 AAAFGRAAAHYEQHAEL-QRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAADH   88 (251)
T ss_pred             HHHHHHHHHhHhHHHHH-HHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCC
Confidence            47899999999986443 3444555555443  457899999999999999998889999999999999999863 3345


Q ss_pred             EEecCCccchhhhhhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHhhcccccC
Q 024647           79 YELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQPFYTV  157 (265)
Q Consensus        79 ~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~  157 (265)
                      +..       +|++.+++++++||+|+++.++||+ |+..++.++.++|+ |||.+++..+....+ ..+...+......
T Consensus        89 ~~~-------~d~~~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk-~gG~l~~~~~~~~~~-~el~~~~~~~~~~  159 (251)
T PRK10258         89 YLA-------GDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVR-PGGVVAFTTLVQGSL-PELHQAWQAVDER  159 (251)
T ss_pred             EEE-------cCcccCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcC-CCeEEEEEeCCCCch-HHHHHHHHHhccC
Confidence            555       7778888888899999999999999 89999999999999 999999988775553 4555554433221


Q ss_pred             -CCCCCcchhhhhhhhccCCCCCCCCCCCCCCCCCCCccceeeeccCHHHHHHHHHhhhHHHHHH---HhCCccchHHHH
Q 024647          158 -DSDPFWEPQRKLVDNKYMTIDFPFEPVDGADSTGPFDRFVIEKTMDLEGYFSYIRSWSAYQTAK---DKGVELLTENVI  233 (265)
Q Consensus       158 -~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~---~~~~~~l~~~~~  233 (265)
                       ...++..+  ..+.+.+...+  +.            .-....+++.++..+++++.....+..   ..++..+....+
T Consensus       160 ~~~~~~~~~--~~l~~~l~~~~--~~------------~~~~~~~~~f~~~~~~l~~lk~~G~~~~~~~~~~~~~~~~~~  223 (251)
T PRK10258        160 PHANRFLPP--DAIEQALNGWR--YQ------------HHIQPITLWFDDALSAMRSLKGIGATHLHEGRDPRILTRSQL  223 (251)
T ss_pred             CccccCCCH--HHHHHHHHhCC--ce------------eeeeEEEEECCCHHHHHHHHHHhCCCCCCCCCCCCCCcHHHH
Confidence             11222221  11122221111  11            111224445666666666655554432   123456666667


Q ss_pred             HHHHHHhccCCCccEEEEEeeEEEEeec
Q 024647          234 ENFRRAWNEDGQSRKVVRFPIYLRIGKV  261 (265)
Q Consensus       234 ~~l~~~~~~~~~~~~~~~~~~~~~~ark  261 (265)
                      +.+.+.|.... +.++++|.+++..++|
T Consensus       224 ~~~~~~~~~~~-g~~~lty~v~~~~~~~  250 (251)
T PRK10258        224 QRLQLAWPQQQ-GRYPLTYHLFLGVIER  250 (251)
T ss_pred             HHHHHhccccC-CCcceEEEEEEEEEEc
Confidence            77777776533 2589999999988776

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.91  E-value=4.6e-24  Score=174.75  Aligned_cols=143  Identities=22%  Similarity=0.359  Sum_probs=113.7

Q ss_pred             hhHHHHHHHHHhhhCCCC--------cHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHH
Q 024647            2 AELFIKQAKQYAETRPNY--------PEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFA   71 (265)
Q Consensus         2 ~~~f~~~a~~Y~~~rp~y--------~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a   71 (265)
                      .+.|++.|..||..-.-.        .++++.++.  .+++.+|||||||||..+..+++..  .+|+|+|+|+.|++.+
T Consensus        14 ~~vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~--~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a   91 (238)
T COG2226          14 QKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLG--IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVA   91 (238)
T ss_pred             HHHHHhhHHHHHhhcccccCcchHHHHHHHHHhhC--CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHH
Confidence            367999999999965322        122222222  1368999999999999999999987  5899999999999999


Q ss_pred             HcC-C-----CceEEecCCccchhhhhhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecCCCCCC
Q 024647           72 TKL-P-----NIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTVPEVN  144 (265)
Q Consensus        72 ~~~-~-----~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~  144 (265)
                      ++. .     +++|+.       +|++++|+++++||+|+++++++++ |++++|+|++|+|| |||.+++.....+. .
T Consensus        92 ~~k~~~~~~~~i~fv~-------~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlK-pgG~~~vle~~~p~-~  162 (238)
T COG2226          92 REKLKKKGVQNVEFVV-------GDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLK-PGGRLLVLEFSKPD-N  162 (238)
T ss_pred             HHHhhccCccceEEEE-------echhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhc-CCeEEEEEEcCCCC-c
Confidence            863 2     255666       8899999999999999999999999 99999999999999 99999988777554 3


Q ss_pred             hHHHHhhcccc
Q 024647          145 VSVDAVFQPFY  155 (265)
Q Consensus       145 ~~~~~~~~~~~  155 (265)
                      ..+...+..++
T Consensus       163 ~~~~~~~~~~~  173 (238)
T COG2226         163 PVLRKAYILYY  173 (238)
T ss_pred             hhhHHHHHHHH
Confidence            44455444443

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.88  E-value=1.2e-21  Score=165.09  Aligned_cols=232  Identities=14%  Similarity=0.202  Sum_probs=141.8

Q ss_pred             HHHHhh---hCCCCcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcCCCceEEecC
Q 024647            9 AKQYAE---TRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKLPNIRYELTS   83 (265)
Q Consensus         9 a~~Y~~---~rp~y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~   83 (265)
                      ++.|.+   .|+.+...+++.+.  ..++.+|||+|||+|.++..+++.+  .+|+|+|+|+.|++.|++ .++.+..  
T Consensus         4 ~~~y~~~~~~~~~~~~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~-~~~~~~~--   78 (255)
T PRK14103          4 PDVYLAFADHRGRPFYDLLARVG--AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE-RGVDART--   78 (255)
T ss_pred             HHHHHHHHhHhhCHHHHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-cCCcEEE--
Confidence            455555   34443344444432  2456889999999999999999884  579999999999999986 4677777  


Q ss_pred             CccchhhhhhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecCCCC--CChHHHHhhc--ccccC-
Q 024647           84 PAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTVPE--VNVSVDAVFQ--PFYTV-  157 (265)
Q Consensus        84 ~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~--~~~~~~~~~~--~~~~~-  157 (265)
                           +|++.++ ++++||+|+++.++||+ |+..+++++.++|| |||.+++..+....  .......+..  .+... 
T Consensus        79 -----~d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  151 (255)
T PRK14103         79 -----GDVRDWK-PKPDTDVVVSNAALQWVPEHADLLVRWVDELA-PGSWIAVQVPGNFDAPSHAAVRALARREPWAKLL  151 (255)
T ss_pred             -----cChhhCC-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCC-CCcEEEEEcCCCcCChhHHHHHHHhccCchhHHh
Confidence                 6667664 56799999999999999 88999999999999 99999886543211  1111111110  11100 


Q ss_pred             CCCCC----cchhhhhhhhccCCCCCCCCCCCCCCCCCCCccceeeecc-CHHHHHHHHHhhh---HHHHHHHhCCccch
Q 024647          158 DSDPF----WEPQRKLVDNKYMTIDFPFEPVDGADSTGPFDRFVIEKTM-DLEGYFSYIRSWS---AYQTAKDKGVELLT  229 (265)
Q Consensus       158 ~~~~~----~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~s---~~~~~~~~~~~~l~  229 (265)
                      ...++    .......+.+.+...||......         . .....+ ..+.+.+++...+   ....+.++..+.+.
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~---------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  221 (255)
T PRK14103        152 RDIPFRVGAVVQTPAGYAELLTDAGCKVDAWE---------T-TYVHQLTGEDPVLDWITGTALRPVRERLSDDSWEQFR  221 (255)
T ss_pred             cccccccCcCCCCHHHHHHHHHhCCCeEEEEe---------e-eeeeeCCCchhhhhhhhccchhhhhhhCCHHHHHHHH
Confidence            00011    00111223344455553211111         0 111122 2455677765433   22333344556667


Q ss_pred             HHHHHHHHHHhccCCCccEEEEEeeEEEEeecC
Q 024647          230 ENVIENFRRAWNEDGQSRKVVRFPIYLRIGKVG  262 (265)
Q Consensus       230 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ark~  262 (265)
                      +++.+.+.+.+.....+.+...|.....+|+|+
T Consensus       222 ~~~~~~l~~~~~~~~~g~~~~~~~~~~~~a~~~  254 (255)
T PRK14103        222 AELIPLLREAYPPRADGTTFFPFRRVFVVARVG  254 (255)
T ss_pred             HHHHHHHHHHCCCCCCCcEEeeeccEEEEEEeC
Confidence            767777777754222125778999999999996

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.88  E-value=1.5e-22  Score=167.26  Aligned_cols=149  Identities=23%  Similarity=0.391  Sum_probs=87.6

Q ss_pred             hhHHHHHHHHHhhhCCC--------CcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHH
Q 024647            2 AELFIKQAKQYAETRPN--------YPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEF   70 (265)
Q Consensus         2 ~~~f~~~a~~Y~~~rp~--------y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~   70 (265)
                      .+.|++.|..||....-        .-..+++.+  ...++.+|||+|||||.++..++++.   .+|+|+|+|+.|++.
T Consensus        10 ~~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~--~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~   87 (233)
T PF01209_consen   10 RKMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLL--GLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEV   87 (233)
T ss_dssp             ---------------------------SHHHHHH--T--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHH
T ss_pred             HHHHHHHHHHhCCCccccCCcHHHHHHHHHHhcc--CCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHH
Confidence            36799999999984221        112223222  23467899999999999999999864   379999999999999


Q ss_pred             HHc------CCCceEEecCCccchhhhhhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecCCCCC
Q 024647           71 ATK------LPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTVPEV  143 (265)
Q Consensus        71 a~~------~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~  143 (265)
                      |++      ..++++++       +|++++|+++++||+|++++++|.+ |+.++++|+.|+|| |||.+++..+..+. 
T Consensus        88 a~~k~~~~~~~~i~~v~-------~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLk-PGG~l~ile~~~p~-  158 (233)
T PF01209_consen   88 ARKKLKREGLQNIEFVQ-------GDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLK-PGGRLVILEFSKPR-  158 (233)
T ss_dssp             HHHHHHHTT--SEEEEE--------BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEE-EEEEEEEEEEEB-S-
T ss_pred             HHHHHHhhCCCCeeEEE-------cCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcC-CCeEEEEeeccCCC-
Confidence            985      24778887       8889999999999999999999998 99999999999999 99999988877655 


Q ss_pred             ChHHHHhhcccccCCCCCC
Q 024647          144 NVSVDAVFQPFYTVDSDPF  162 (265)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~  162 (265)
                      ...+..++.-+.. ...|.
T Consensus       159 ~~~~~~~~~~y~~-~ilP~  176 (233)
T PF01209_consen  159 NPLLRALYKFYFK-YILPL  176 (233)
T ss_dssp             SHHHHHHHHH---------
T ss_pred             Cchhhceeeeeec-ccccc
Confidence            4566666554443 34443

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.86  E-value=3.2e-20  Score=156.61  Aligned_cols=236  Identities=13%  Similarity=0.216  Sum_probs=140.8

Q ss_pred             HHHHHhhhCCCCcHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHc-CCCceEEec
Q 024647            8 QAKQYAETRPNYPEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATK-LPNIRYELT   82 (265)
Q Consensus         8 ~a~~Y~~~rp~y~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~-~~~~~~~~~   82 (265)
                      .|+.|++..+.. .+....+....  .++.+|||+|||+|.++..+++.+  .+|+|+|+|+.|++.+++ .+++.+.. 
T Consensus         5 ~~~~Y~~~~~~~-~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~-   82 (258)
T PRK01683          5 NPSLYLKFEDER-TRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVE-   82 (258)
T ss_pred             CHHHHHHHHHHh-hcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEE-
Confidence            356676644431 12232333332  456899999999999999999875  579999999999999986 35677777 


Q ss_pred             CCccchhhhhhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecCCCC-CC-hHHHHhh-----ccc
Q 024647           83 SPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTVPE-VN-VSVDAVF-----QPF  154 (265)
Q Consensus        83 ~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~-~~-~~~~~~~-----~~~  154 (265)
                            +|+..+. ++++||+|+++.++||+ |+..+++++.++|+ |||.+++..+.... .. ..+.++.     ...
T Consensus        83 ------~d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lk-pgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  154 (258)
T PRK01683         83 ------ADIASWQ-PPQALDLIFANASLQWLPDHLELFPRLVSLLA-PGGVLAVQMPDNLDEPSHVLMREVAENGPWEQN  154 (258)
T ss_pred             ------CchhccC-CCCCccEEEEccChhhCCCHHHHHHHHHHhcC-CCcEEEEECCCCCCCHHHHHHHHHHccCchHHH
Confidence                  5666553 45699999999999999 88999999999999 99999886543111 11 1111111     111


Q ss_pred             ccC-CCCCCcchhhhhhhhccCCCCCCCCCCCCCCCCCCCccceeeecc-CHHHHHHHHHhhhHH---HHHHHhCCccch
Q 024647          155 YTV-DSDPFWEPQRKLVDNKYMTIDFPFEPVDGADSTGPFDRFVIEKTM-DLEGYFSYIRSWSAY---QTAKDKGVELLT  229 (265)
Q Consensus       155 ~~~-~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~s~~---~~~~~~~~~~l~  229 (265)
                      +.. ...+...+......+.+...++-. .+.         .......+ +.+++.+++++.+..   ..+.+..++.+.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~l~~~g~~v-~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~f~  224 (258)
T PRK01683        155 LPDRGARRAPLPPPHAYYDALAPAACRV-DIW---------HTTYYHPMPSAQAIVEWVKGTGLRPFLDPLTESEQAAFL  224 (258)
T ss_pred             hccccccCcCCCCHHHHHHHHHhCCCce-eee---------eeeeeeecCCchhhhhhhhhccHHHHHhhCCHHHHHHHH
Confidence            100 000111111111122222222111 110         11222233 456777777654322   223344566677


Q ss_pred             HHHHHHHHHHhccCCCccEEEEEeeEEEEeecCC
Q 024647          230 ENVIENFRRAWNEDGQSRKVVRFPIYLRIGKVGN  263 (265)
Q Consensus       230 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ark~~  263 (265)
                      +++.+.+.+.+....++.+.++|...+++|+|.+
T Consensus       225 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  258 (258)
T PRK01683        225 AAYLARIAEAYPLQADGKVLLAFPRLFIVARRKE  258 (258)
T ss_pred             HHHHHHHHHHCCCCCCCcEEcccceEEEEEEecC
Confidence            7677777777542121258899999999999853

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.85  E-value=1.4e-20  Score=158.81  Aligned_cols=132  Identities=20%  Similarity=0.242  Sum_probs=104.5

Q ss_pred             hHHHHHHHHHhhhCCCC---cHHHHHHH-Hh--hCCCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHc
Q 024647            3 ELFIKQAKQYAETRPNY---PEELFKFI-TS--KTTNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATK   73 (265)
Q Consensus         3 ~~f~~~a~~Y~~~rp~y---~~~l~~~l-~~--~~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~   73 (265)
                      +.|+..|..||.....+   -....+.+ ..  ..+++.+|||+|||+|.++..+++..   .+|+|+|+|++|++.|++
T Consensus        37 ~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~  116 (261)
T PLN02233         37 ALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAAS  116 (261)
T ss_pred             HHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence            57999999999854321   12222222 22  23467899999999999999998864   379999999999999864


Q ss_pred             C---------CCceEEecCCccchhhhhhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecCCCC
Q 024647           74 L---------PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTVPE  142 (265)
Q Consensus        74 ~---------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~  142 (265)
                      .         .++.+.+       +|++++++++++||+|++++++|++ |+..+++++.|+|| |||.+++.++..+.
T Consensus       117 r~~~~~~~~~~~i~~~~-------~d~~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLk-pGG~l~i~d~~~~~  187 (261)
T PLN02233        117 RQELKAKSCYKNIEWIE-------GDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLK-PGSRVSILDFNKST  187 (261)
T ss_pred             HhhhhhhccCCCeEEEE-------cccccCCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcC-cCcEEEEEECCCCC
Confidence            2         2456666       7788888899999999999999999 89999999999999 99999988776443

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.84  E-value=1.5e-20  Score=148.16  Aligned_cols=224  Identities=17%  Similarity=0.287  Sum_probs=146.5

Q ss_pred             hCCCCcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHc-CCCceEEecCCccchhhh
Q 024647           15 TRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATK-LPNIRYELTSPAMSIAEL   91 (265)
Q Consensus        15 ~rp~y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~   91 (265)
                      .||.+  +++..+-  .....+|+|+|||+|..|..|+++++  .|+|+|.|+.|++.|++ .++++|..       +|+
T Consensus        16 tRPa~--dLla~Vp--~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~-------aDl   84 (257)
T COG4106          16 TRPAR--DLLARVP--LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEE-------ADL   84 (257)
T ss_pred             cCcHH--HHHhhCC--ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceec-------ccH
Confidence            55543  5554442  23457799999999999999999986  69999999999998875 68999998       788


Q ss_pred             hhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecCC--CCCChHHHHhhc-----ccccCC---CC
Q 024647           92 EQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTV--PEVNVSVDAVFQ-----PFYTVD---SD  160 (265)
Q Consensus        92 ~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~--~~~~~~~~~~~~-----~~~~~~---~~  160 (265)
                      ..+. +..+.|+++++-++||+ |...++..+...|. |||+|++..+..  ......+.+.-.     +.+.+.   -.
T Consensus        85 ~~w~-p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~-Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~  162 (257)
T COG4106          85 RTWK-PEQPTDLLFANAVLQWLPDHPELLPRLVSQLA-PGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRA  162 (257)
T ss_pred             hhcC-CCCccchhhhhhhhhhccccHHHHHHHHHhhC-CCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccC
Confidence            8884 77799999999999999 99999999999999 999999977642  111222222211     111100   00


Q ss_pred             CCcchhhhhhhhccCCCCCCCCCCCCCCCCCCCccceeeecc-CHHHHHHHHHhhh---HHHHHHHhCCccchHHHHHHH
Q 024647          161 PFWEPQRKLVDNKYMTIDFPFEPVDGADSTGPFDRFVIEKTM-DLEGYFSYIRSWS---AYQTAKDKGVELLTENVIENF  236 (265)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~s---~~~~~~~~~~~~l~~~~~~~l  236 (265)
                      +...|. .+ .+.+...   -..+.      -| .-...+.+ ..+.++++++...   ....+.+.+++.+.....+.|
T Consensus       163 ~v~s~a-~Y-y~lLa~~---~~rvD------iW-~T~Y~h~l~~a~aIvdWvkgTgLrP~L~~L~e~~~~~FL~~Y~~~l  230 (257)
T COG4106         163 PLPSPA-AY-YELLAPL---ACRVD------IW-HTTYYHQLPGADAIVDWVKGTGLRPYLDRLDEEERQRFLDRYLALL  230 (257)
T ss_pred             CCCCHH-HH-HHHhCcc---cceee------ee-eeeccccCCCccchhhheeccccceeccccCHHHHHHHHHHHHHHH
Confidence            000010 00 0111000   00000      11 11222333 4577778887743   334455566677777688888


Q ss_pred             HHHhccCCCccEEEEEeeEEEEeecCC
Q 024647          237 RRAWNEDGQSRKVVRFPIYLRIGKVGN  263 (265)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~ark~~  263 (265)
                      .+.+....++.+-+.|+-++++|++++
T Consensus       231 ~~aYP~~~dGr~ll~FpRlFiVA~~~~  257 (257)
T COG4106         231 AEAYPPRADGRVLLAFPRLFIVATRGE  257 (257)
T ss_pred             HHhCCCccCCcEEeecceEEEEEecCC
Confidence            888886554467899999999998753

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.83  E-value=1.6e-19  Score=150.34  Aligned_cols=228  Identities=19%  Similarity=0.266  Sum_probs=141.0

Q ss_pred             HHHHHHHHHhhhCCCCcHH----HHHHHHhhC-CCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC--
Q 024647            4 LFIKQAKQYAETRPNYPEE----LFKFITSKT-TNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL--   74 (265)
Q Consensus         4 ~f~~~a~~Y~~~rp~y~~~----l~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~--   74 (265)
                      .|++++..|+++. .+...    +++.+.... ..+.+|||+|||+|.++..+++.++  +++++|+++.+++.++..  
T Consensus         1 ~~~~~~~~y~~~~-~~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~   79 (240)
T TIGR02072         1 SFNKAAKTYDRHA-KIQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS   79 (240)
T ss_pred             CcchhhhchhHHH-HHHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC
Confidence            3778888888742 22223    333333322 2346899999999999999998875  589999999999988753  


Q ss_pred             CCceEEecCCccchhhhhhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHhhcc
Q 024647           75 PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQP  153 (265)
Q Consensus        75 ~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~~~  153 (265)
                      +++.+..       +|++..++++++||+|+++.++||+ ++..++.++.++|+ |||.+++..+....+ ..+...+..
T Consensus        80 ~~~~~~~-------~d~~~~~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~-~~G~l~~~~~~~~~~-~~~~~~~~~  150 (240)
T TIGR02072        80 ENVQFIC-------GDAEKLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLK-PGGLLAFSTFGPGTL-HELRQSFGQ  150 (240)
T ss_pred             CCCeEEe-------cchhhCCCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcC-CCcEEEEEeCCccCH-HHHHHHHHH
Confidence            3566666       6777777778899999999999999 99999999999999 999999877664443 333333321


Q ss_pred             cccCCCCCCcchhhhhhhhccCCCCCCCCCCCCCCCCCCCccceee-eccCHHHHHHHHHhhhHHHHHHH-hCCccchHH
Q 024647          154 FYTVDSDPFWEPQRKLVDNKYMTIDFPFEPVDGADSTGPFDRFVIE-KTMDLEGYFSYIRSWSAYQTAKD-KGVELLTEN  231 (265)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~s~~~~~~~-~~~~~l~~~  231 (265)
                          ...++..+.  .+.+.+...   |..+...       ..... ...+...+..+++..+....... ..++.+. .
T Consensus       151 ----~~~~~~~~~--~~~~~l~~~---f~~~~~~-------~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-~  213 (240)
T TIGR02072       151 ----HGLRYLSLD--ELKALLKNS---FELLTLE-------EELITLSFDDPLDVLRHLKKTGANGLSSGRTSRKQLK-A  213 (240)
T ss_pred             ----hccCCCCHH--HHHHHHHHh---cCCcEEE-------EEEEEEeCCCHHHHHHHHHHhccCcCCCCCCCHHHHH-H
Confidence                112222211  111222211   2111100       11111 12245666666666443211111 1222222 2


Q ss_pred             HHHHHHHHhccCCCccEEEEEeeEEEEeec
Q 024647          232 VIENFRRAWNEDGQSRKVVRFPIYLRIGKV  261 (265)
Q Consensus       232 ~~~~l~~~~~~~~~~~~~~~~~~~~~~ark  261 (265)
                      +.+.+.+.+..+   +++++|...+.+|+|
T Consensus       214 ~~~~~~~~~~~~---gi~~~~~~~~~~~~k  240 (240)
T TIGR02072       214 FLERYEQEFQPD---GLPLTYHVVYGIAKK  240 (240)
T ss_pred             HHHHHHHhhcCC---CceeEEEEEEEEEEC
Confidence            555555555443   389999999999987

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK05785 hypothetical protein; Provisional

Probab=99.83  E-value=1.3e-19  Score=149.62  Aligned_cols=119  Identities=17%  Similarity=0.197  Sum_probs=97.4

Q ss_pred             hhHHHHHHHHHhhhCCCC--------cHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcC-CcEEEEcCCHHHHHHHH
Q 024647            2 AELFIKQAKQYAETRPNY--------PEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIF-ENVIGTETSPKQIEFAT   72 (265)
Q Consensus         2 ~~~f~~~a~~Y~~~rp~y--------~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~   72 (265)
                      .+.|++.|..||......        ..++++.+....+++.+|||+|||||..+..+++.+ .+|+|+|+|++|++.|+
T Consensus        12 ~~~f~~iA~~YD~~n~~~s~g~~~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~   91 (226)
T PRK05785         12 QEAYNKIPKAYDRANRFISFNQDVRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNL   91 (226)
T ss_pred             HHHHHhhhHHHHHhhhhccCCCcHHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHH
Confidence            367999999999854211        233455555544557899999999999999999884 68999999999999998


Q ss_pred             cCCCceEEecCCccchhhhhhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCC
Q 024647           73 KLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPN  130 (265)
Q Consensus        73 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pg  130 (265)
                      ..  ..+.+       +|++.+|+++++||+|++++++|++ |++.+++++.|+|| |.
T Consensus        92 ~~--~~~~~-------~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLk-p~  140 (226)
T PRK05785         92 VA--DDKVV-------GSFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSR-KQ  140 (226)
T ss_pred             hc--cceEE-------echhhCCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhc-Cc
Confidence            53  23444       7788899999999999999999998 99999999999999 84

>PLN02244 tocopherol O-methyltransferase

Probab=99.82  E-value=1.8e-19  Score=157.49  Aligned_cols=99  Identities=24%  Similarity=0.292  Sum_probs=85.5

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhc-CCcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCCCCceeE
Q 024647           32 TNHELAWDVGTGSGQAAASLSGI-FENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAAQSTVDL  103 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dl  103 (265)
                      .++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.+++.       .++.+..       +|+.++++++++||+
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~-------~D~~~~~~~~~~FD~  189 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQV-------ADALNQPFEDGQFDL  189 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEE-------cCcccCCCCCCCccE
Confidence            34678999999999999999987 56899999999999987652       3566666       677778888899999


Q ss_pred             EEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          104 VTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       104 v~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      |++..++|++ |...+++++.++|| |||.|++.++
T Consensus       190 V~s~~~~~h~~d~~~~l~e~~rvLk-pGG~lvi~~~  224 (340)
T PLN02244        190 VWSMESGEHMPDKRKFVQELARVAA-PGGRIIIVTW  224 (340)
T ss_pred             EEECCchhccCCHHHHHHHHHHHcC-CCcEEEEEEe
Confidence            9999998887 89999999999999 9999998654

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.80  E-value=1.8e-19  Score=128.17  Aligned_cols=90  Identities=26%  Similarity=0.379  Sum_probs=77.7

Q ss_pred             EEEcCCcchhHHHHHhc-CCcEEEEcCCHHHHHHHHcC---CCceEEecCCccchhhhhhccCCCCceeEEEeccccccC
Q 024647           38 WDVGTGSGQAAASLSGI-FENVIGTETSPKQIEFATKL---PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF  113 (265)
Q Consensus        38 lDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~---~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~  113 (265)
                      ||+|||+|..+..++++ ..+|+++|+|+.+++.+++.   .++.+..       +|++.+++++++||+|++..++||+
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~~~sfD~v~~~~~~~~~   73 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGVSFRQ-------GDAEDLPFPDNSFDVVFSNSVLHHL   73 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEE-------SBTTSSSS-TT-EEEEEEESHGGGS
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCchhee-------ehHHhCccccccccccccccceeec
Confidence            89999999999999999 77999999999999999863   3455666       7788899999999999999999999


Q ss_pred             -ChhHHHHHHHHHhcCCCcEEEE
Q 024647          114 -DLPQFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus       114 -~~~~~l~~~~~~Lk~pgG~l~~  135 (265)
                       ++..+++++.|+|| |||++++
T Consensus        74 ~~~~~~l~e~~rvLk-~gG~l~~   95 (95)
T PF08241_consen   74 EDPEAALREIYRVLK-PGGRLVI   95 (95)
T ss_dssp             SHHHHHHHHHHHHEE-EEEEEEE
T ss_pred             cCHHHHHHHHHHHcC-cCeEEeC
Confidence             88899999999999 9999985

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.78  E-value=2.4e-18  Score=144.97  Aligned_cols=129  Identities=20%  Similarity=0.320  Sum_probs=100.3

Q ss_pred             hHHHHHHHHHhhhCCCCc----------HHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHH
Q 024647            3 ELFIKQAKQYAETRPNYP----------EELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFAT   72 (265)
Q Consensus         3 ~~f~~~a~~Y~~~rp~y~----------~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~   72 (265)
                      +.|+..|+.|++..=.-+          ..+.+.+.....++.+|||+|||+|..+..+++.+.+|+++|+|+.|++.|+
T Consensus         4 ~~fd~~a~~f~~~~y~~~~g~~r~~~~~~~~~~~l~~l~~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~   83 (255)
T PRK11036          4 RNFDDIAEKFSRNIYGTTKGQIRQAILWQDLDRLLAELPPRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAK   83 (255)
T ss_pred             CChhhHHHHHHHhccCCCccHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHH
Confidence            679999999998332211          1222233322345679999999999999999999999999999999999987


Q ss_pred             cC-------CCceEEecCCccchhhhhhcc-CCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           73 KL-------PNIRYELTSPAMSIAELEQNV-AAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        73 ~~-------~~~~~~~~~~~~~~~d~~~~~-~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +.       .++.+.+       +|+++++ ..+++||+|++..++||+ ++..+++++.++|| |||.+++..++
T Consensus        84 ~~~~~~g~~~~v~~~~-------~d~~~l~~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~n  151 (255)
T PRK11036         84 QAAEAKGVSDNMQFIH-------CAAQDIAQHLETPVDLILFHAVLEWVADPKSVLQTLWSVLR-PGGALSLMFYN  151 (255)
T ss_pred             HHHHhcCCccceEEEE-------cCHHHHhhhcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcC-CCeEEEEEEEC
Confidence            52       3566666       5555543 456799999999999999 89999999999999 99999876554

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.77  E-value=2.6e-18  Score=138.79  Aligned_cols=145  Identities=17%  Similarity=0.213  Sum_probs=107.1

Q ss_pred             hHHHHHHHHHhhhCCCCcHH----HHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcC--------CcEEEEcCCHHHH
Q 024647            3 ELFIKQAKQYAETRPNYPEE----LFKFITSKT--TNHELAWDVGTGSGQAAASLSGIF--------ENVIGTETSPKQI   68 (265)
Q Consensus         3 ~~f~~~a~~Y~~~rp~y~~~----l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~--------~~v~~vD~s~~~~   68 (265)
                      ..|++.|..||---....--    =-++....+  .+++++||++||||.++..+.++.        .+|+.+|+||.|+
T Consensus        64 ~vF~~vA~~YD~mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL  143 (296)
T KOG1540|consen   64 HVFESVAKKYDIMNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHML  143 (296)
T ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHH
Confidence            46888888888721110000    011122222  356899999999999999998753        4699999999999


Q ss_pred             HHHHcCC---------CceEEecCCccchhhhhhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647           69 EFATKLP---------NIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        69 ~~a~~~~---------~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      +.++++.         .+.+++       +|++++|+++++||..++++.+..+ |+++++++++|+|| |||+|.+..+
T Consensus       144 ~vgkqRa~~~~l~~~~~~~w~~-------~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLK-pGGrf~cLeF  215 (296)
T KOG1540|consen  144 AVGKQRAKKRPLKASSRVEWVE-------GDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLK-PGGRFSCLEF  215 (296)
T ss_pred             HHHHHHHhhcCCCcCCceEEEe-------CCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcC-CCcEEEEEEc
Confidence            9987632         245555       8889999999999999999999877 99999999999999 9999998766


Q ss_pred             CCCCCChHHHHhhccccc
Q 024647          139 TVPEVNVSVDAVFQPFYT  156 (265)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~  156 (265)
                      ...+ ++.+..++..+..
T Consensus       216 skv~-~~~l~~fy~~ysf  232 (296)
T KOG1540|consen  216 SKVE-NEPLKWFYDQYSF  232 (296)
T ss_pred             cccc-cHHHHHHHHhhhh
Confidence            5322 3566666655544

>PRK08317 hypothetical protein; Provisional

Probab=99.77  E-value=4e-17  Score=135.74  Aligned_cols=99  Identities=20%  Similarity=0.346  Sum_probs=84.7

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC-----CCceEEecCCccchhhhhhccCCCCceeE
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL-----PNIRYELTSPAMSIAELEQNVAAQSTVDL  103 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~d~~~~~~~~~~~Dl  103 (265)
                      .++.+|||+|||+|.++..+++++   .+++|+|+|+.+++.+++.     .++.+..       +|++..++++++||+
T Consensus        18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~-------~d~~~~~~~~~~~D~   90 (241)
T PRK08317         18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVR-------GDADGLPFPDGSFDA   90 (241)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEe-------cccccCCCCCCCceE
Confidence            466899999999999999999875   4799999999999988753     4566666       566666677789999


Q ss_pred             EEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          104 VTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       104 v~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      |++..+++++ ++..+++++.++|+ |||.+++..+
T Consensus        91 v~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~~  125 (241)
T PRK08317         91 VRSDRVLQHLEDPARALAEIARVLR-PGGRVVVLDT  125 (241)
T ss_pred             EEEechhhccCCHHHHHHHHHHHhc-CCcEEEEEec
Confidence            9999999888 99999999999999 9999988654

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.76  E-value=2.7e-18  Score=134.14  Aligned_cols=117  Identities=21%  Similarity=0.313  Sum_probs=93.2

Q ss_pred             HhhhCCCCcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhh
Q 024647           12 YAETRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAEL   91 (265)
Q Consensus        12 Y~~~rp~y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~   91 (265)
                      |++.+.....+++..+....+++.+|||+|||+|.++..+++.+.+++|+|+++.+++.    .++....       .+.
T Consensus         1 y~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~----~~~~~~~-------~~~   69 (161)
T PF13489_consen    1 YARHRYRAYADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK----RNVVFDN-------FDA   69 (161)
T ss_dssp             ---GCCHCHHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH----TTSEEEE-------EEC
T ss_pred             CchhHHHHHHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh----hhhhhhh-------hhh
Confidence            56666655667777777656778999999999999999999998899999999999988    2333333       112


Q ss_pred             hhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecCC
Q 024647           92 EQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTV  140 (265)
Q Consensus        92 ~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~  140 (265)
                      .....++++||+|++..++||+ |+..+++++.++|| |||.+++..+..
T Consensus        70 ~~~~~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~Lk-pgG~l~~~~~~~  118 (161)
T PF13489_consen   70 QDPPFPDGSFDLIICNDVLEHLPDPEEFLKELSRLLK-PGGYLVISDPNR  118 (161)
T ss_dssp             HTHHCHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEE-EEEEEEEEEEBT
T ss_pred             hhhhccccchhhHhhHHHHhhcccHHHHHHHHHHhcC-CCCEEEEEEcCC
Confidence            2333567899999999999999 88999999999999 999999977764

...

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.76  E-value=1.4e-17  Score=138.24  Aligned_cols=133  Identities=20%  Similarity=0.234  Sum_probs=102.6

Q ss_pred             hhHHHHHHHHHhhhCCC--C--cHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHH
Q 024647            2 AELFIKQAKQYAETRPN--Y--PEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFAT   72 (265)
Q Consensus         2 ~~~f~~~a~~Y~~~rp~--y--~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~   72 (265)
                      .+.|++.|..||.....  +  .....+.+....  .++.+|||+|||+|..+..+++..   .+|+|+|+|+.|++.++
T Consensus         8 ~~~f~~~a~~yd~~~~~~~~~~~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~   87 (231)
T TIGR02752         8 HKVFEKIYKKYDRMNSVISFQRHKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGR   87 (231)
T ss_pred             HHHHHHhhhHHhHHHHHhcCCchHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence            47899999999984331  1  111122233332  456899999999999999999864   37999999999999887


Q ss_pred             cC------CCceEEecCCccchhhhhhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecCCCC
Q 024647           73 KL------PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTVPE  142 (265)
Q Consensus        73 ~~------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~  142 (265)
                      +.      .++.+..       +|++.+++++++||+|++..++|++ ++..+++++.++|+ |||.+++.....+.
T Consensus        88 ~~~~~~~~~~v~~~~-------~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk-~gG~l~~~~~~~~~  156 (231)
T TIGR02752        88 QKVKDAGLHNVELVH-------GNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVK-PGGKVVCLETSQPT  156 (231)
T ss_pred             HHHHhcCCCceEEEE-------echhcCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcC-cCeEEEEEECCCCC
Confidence            42      3556665       6667777778899999999999998 88899999999999 99999987665444

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.76  E-value=4.7e-18  Score=146.48  Aligned_cols=100  Identities=18%  Similarity=0.232  Sum_probs=87.1

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCCCCceeEEE
Q 024647           33 NHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAAQSTVDLVT  105 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~  105 (265)
                      ++.+|||||||+|.++..+++.+.+|+|||+++.|++.|+..       .++.+..       +++++++.++++||+|+
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~-------~dae~l~~~~~~FD~Vi  203 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLC-------TTAEKLADEGRKFDAVL  203 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEe-------cCHHHhhhccCCCCEEE
Confidence            446899999999999999999888999999999999998752       2455555       67778777778999999


Q ss_pred             eccccccC-ChhHHHHHHHHHhcCCCcEEEEEecCC
Q 024647          106 IAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTV  140 (265)
Q Consensus       106 ~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~  140 (265)
                      +..++|++ |+..+++++.++|| |||.+++.+++.
T Consensus       204 ~~~vLeHv~d~~~~L~~l~r~Lk-PGG~liist~nr  238 (322)
T PLN02396        204 SLEVIEHVANPAEFCKSLSALTI-PNGATVLSTINR  238 (322)
T ss_pred             EhhHHHhcCCHHHHHHHHHHHcC-CCcEEEEEECCc
Confidence            99999999 99999999999999 999999977653

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.75  E-value=5.5e-18  Score=136.83  Aligned_cols=100  Identities=26%  Similarity=0.340  Sum_probs=86.8

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC---CC--ceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647           33 NHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL---PN--IRYELTSPAMSIAELEQNVAAQSTVDLVTIA  107 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---~~--~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~  107 (265)
                      ++.+|||+|||-|.++..+++.+++|+|+|+++.+++.|+..   ..  +++.+       ...+++....++||+|+|.
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~-------~~~edl~~~~~~FDvV~cm  131 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQ-------ATVEDLASAGGQFDVVTCM  131 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchh-------hhHHHHHhcCCCccEEEEh
Confidence            678999999999999999999999999999999999999853   22  33544       5556665555899999999


Q ss_pred             cccccC-ChhHHHHHHHHHhcCCCcEEEEEecCC
Q 024647          108 QAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTV  140 (265)
Q Consensus       108 ~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~  140 (265)
                      .+++++ |+..++..|.+++| |||.+++.+++.
T Consensus       132 EVlEHv~dp~~~~~~c~~lvk-P~G~lf~STinr  164 (243)
T COG2227         132 EVLEHVPDPESFLRACAKLVK-PGGILFLSTINR  164 (243)
T ss_pred             hHHHccCCHHHHHHHHHHHcC-CCcEEEEecccc
Confidence            999888 99999999999999 999999988874

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.70  E-value=7e-17  Score=125.45  Aligned_cols=98  Identities=24%  Similarity=0.432  Sum_probs=82.9

Q ss_pred             CCCeEEEEcCCcchhHHHHHh-c--CCcEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhcc--CCCCce
Q 024647           33 NHELAWDVGTGSGQAAASLSG-I--FENVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQNV--AAQSTV  101 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~-~--~~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~~--~~~~~~  101 (265)
                      ++.+|||+|||+|.++..+++ .  ..+++|+|+|+.|++.|++      ..++++.+       +|+.+++  ++ +.|
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~-------~d~~~l~~~~~-~~~   74 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQ-------GDIEDLPQELE-EKF   74 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEE-------SBTTCGCGCSS-TTE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEE-------eehhccccccC-CCe
Confidence            567899999999999999995 3  3579999999999999886      35788888       5555554  44 789


Q ss_pred             eEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          102 DLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       102 Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      |+|++..++|++ ++..+++++.++|+ +||.+++..+.
T Consensus        75 D~I~~~~~l~~~~~~~~~l~~~~~~lk-~~G~~i~~~~~  112 (152)
T PF13847_consen   75 DIIISNGVLHHFPDPEKVLKNIIRLLK-PGGILIISDPN  112 (152)
T ss_dssp             EEEEEESTGGGTSHHHHHHHHHHHHEE-EEEEEEEEEEE
T ss_pred             eEEEEcCchhhccCHHHHHHHHHHHcC-CCcEEEEEECC
Confidence            999999999999 78899999999999 99999987765

...

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.70  E-value=3.5e-16  Score=132.96  Aligned_cols=108  Identities=19%  Similarity=0.333  Sum_probs=84.3

Q ss_pred             HHHHHHHhhCC-CCCeEEEEcCCcchhHHHHHhcCC-----cEEEEcCCHHHHHHHHc-CCCceEEecCCccchhhhhhc
Q 024647           22 ELFKFITSKTT-NHELAWDVGTGSGQAAASLSGIFE-----NVIGTETSPKQIEFATK-LPNIRYELTSPAMSIAELEQN   94 (265)
Q Consensus        22 ~l~~~l~~~~~-~~~~vlDvGcG~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~   94 (265)
                      .+.+.+....+ ...+|||+|||+|.++..+++..+     .++|+|+|+.|++.|++ .+++.+..       +|+.++
T Consensus        73 ~i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~-------~d~~~l  145 (272)
T PRK11088         73 AVANLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCV-------ASSHRL  145 (272)
T ss_pred             HHHHHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEE-------eecccC
Confidence            33344444433 447899999999999999987643     68999999999998875 46777777       667778


Q ss_pred             cCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecCCCCC
Q 024647           95 VAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTVPEV  143 (265)
Q Consensus        95 ~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~  143 (265)
                      |+++++||+|++.++      +..++++.|+|+ |||.|++..+....+
T Consensus       146 p~~~~sfD~I~~~~~------~~~~~e~~rvLk-pgG~li~~~p~~~~l  187 (272)
T PRK11088        146 PFADQSLDAIIRIYA------PCKAEELARVVK-PGGIVITVTPGPRHL  187 (272)
T ss_pred             CCcCCceeEEEEecC------CCCHHHHHhhcc-CCCEEEEEeCCCcch
Confidence            888899999998654      345789999999 999999988765443

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.70  E-value=2.4e-16  Score=127.62  Aligned_cols=107  Identities=15%  Similarity=0.273  Sum_probs=84.1

Q ss_pred             cHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC------CCceEEecCCccchhhhhh
Q 024647           20 PEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAELEQ   93 (265)
Q Consensus        20 ~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d~~~   93 (265)
                      ++.+++.+. . .++.+|||+|||+|..+..|++++.+|+|+|+|+.|++.+++.      .++.+..       .|+.+
T Consensus        19 ~~~l~~~l~-~-~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~-------~d~~~   89 (197)
T PRK11207         19 HSEVLEAVK-V-VKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAV-------VDLNN   89 (197)
T ss_pred             hHHHHHhcc-c-CCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEe-------cChhh
Confidence            345555543 2 3457899999999999999999999999999999999988752      3455555       56666


Q ss_pred             ccCCCCceeEEEeccccccCC---hhHHHHHHHHHhcCCCcEEEEEe
Q 024647           94 NVAAQSTVDLVTIAQAMHWFD---LPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        94 ~~~~~~~~Dlv~~~~~~~~~~---~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      +++ +++||+|+++.++|+++   ...+++++.++|+ |||.+++..
T Consensus        90 ~~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~Lk-pgG~~~~~~  134 (197)
T PRK11207         90 LTF-DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTK-PGGYNLIVA  134 (197)
T ss_pred             CCc-CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcC-CCcEEEEEE
Confidence            654 46799999999999884   4589999999999 999966543

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.70  E-value=1.4e-16  Score=117.02  Aligned_cols=97  Identities=22%  Similarity=0.372  Sum_probs=78.0

Q ss_pred             CCCeEEEEcCCcchhHHHHHh--cCCcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCCCCceeE
Q 024647           33 NHELAWDVGTGSGQAAASLSG--IFENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAAQSTVDL  103 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~--~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dl  103 (265)
                      |+.+|||+|||+|.++..+++  .+.+|+|+|+|+.|++.+++.       .++.+..       +|+.......+.||+
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~-------~d~~~~~~~~~~~D~   73 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQ-------GDAEFDPDFLEPFDL   73 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEE-------SCCHGGTTTSSCEEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEE-------CccccCcccCCCCCE
Confidence            467899999999999999999  677899999999999988752       5788888       555112223457999


Q ss_pred             EEecc-ccccC-C---hhHHHHHHHHHhcCCCcEEEEEe
Q 024647          104 VTIAQ-AMHWF-D---LPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       104 v~~~~-~~~~~-~---~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      |++.. ++|+. +   ..++++++.+.|+ |||++++..
T Consensus        74 v~~~~~~~~~~~~~~~~~~~l~~~~~~L~-pgG~lvi~~  111 (112)
T PF12847_consen   74 VICSGFTLHFLLPLDERRRVLERIRRLLK-PGGRLVINT  111 (112)
T ss_dssp             EEECSGSGGGCCHHHHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             EEECCCccccccchhHHHHHHHHHHHhcC-CCcEEEEEE
Confidence            99999 66643 3   4679999999999 999999854

...

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.70  E-value=1.2e-15  Score=128.93  Aligned_cols=100  Identities=20%  Similarity=0.333  Sum_probs=83.5

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhc-CCcEEEEcCCHHHHHHHHcC----CCceEEecCCccchhhhhhccCCCCceeEEEe
Q 024647           32 TNHELAWDVGTGSGQAAASLSGI-FENVIGTETSPKQIEFATKL----PNIRYELTSPAMSIAELEQNVAAQSTVDLVTI  106 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~  106 (265)
                      +++.+|||||||+|..+..+++. ..+|+|+|+|+.|++.++++    .++.+..       +|+...++++++||+|++
T Consensus        51 ~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~-------~D~~~~~~~~~~FD~V~s  123 (263)
T PTZ00098         51 NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEA-------NDILKKDFPENTFDMIYS  123 (263)
T ss_pred             CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEE-------CCcccCCCCCCCeEEEEE
Confidence            56789999999999999999875 45899999999999998863    3466665       666677778889999999


Q ss_pred             ccccccC---ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          107 AQAMHWF---DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       107 ~~~~~~~---~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      ..+++++   ++..+++++.++|| |||.|++..+.
T Consensus       124 ~~~l~h~~~~d~~~~l~~i~r~Lk-PGG~lvi~d~~  158 (263)
T PTZ00098        124 RDAILHLSYADKKKLFEKCYKWLK-PNGILLITDYC  158 (263)
T ss_pred             hhhHHhCCHHHHHHHHHHHHHHcC-CCcEEEEEEec
Confidence            8876554   67789999999999 99999987664

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.68  E-value=5.2e-16  Score=130.07  Aligned_cols=123  Identities=15%  Similarity=0.282  Sum_probs=93.4

Q ss_pred             HHH-HHHHHhh----hCCCCcHHHHHH---HH-hhCCCCCeEEEEcCCcchhHHHHHhc----CCcEEEEcCCHHHHHHH
Q 024647            5 FIK-QAKQYAE----TRPNYPEELFKF---IT-SKTTNHELAWDVGTGSGQAAASLSGI----FENVIGTETSPKQIEFA   71 (265)
Q Consensus         5 f~~-~a~~Y~~----~rp~y~~~l~~~---l~-~~~~~~~~vlDvGcG~G~~~~~l~~~----~~~v~~vD~s~~~~~~a   71 (265)
                      |+. .|+.|+.    ..|.|. .+...   +. ...+++.+|||+|||+|..+..+++.    ..+++|+|+|+.|++.|
T Consensus        20 f~~~~a~~yd~~~~~~~p~y~-~~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A   98 (247)
T PRK15451         20 FDERVAEVFPDMIQRSVPGYS-NIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERC   98 (247)
T ss_pred             cChHHHHhhhhHHHhcCCChH-HHHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHH
Confidence            444 4678854    788884 33323   22 22356789999999999999988873    35799999999999998


Q ss_pred             HcC-------CCceEEecCCccchhhhhhccCCCCceeEEEeccccccCCh---hHHHHHHHHHhcCCCcEEEEEec
Q 024647           72 TKL-------PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDL---PQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        72 ~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~---~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      +++       .++.+.+       +|+..++.  +.+|+|+++.++|++++   ..+++++.++|+ |||.|++...
T Consensus        99 ~~~~~~~~~~~~v~~~~-------~d~~~~~~--~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~Lk-pGG~l~l~e~  165 (247)
T PRK15451         99 RRHIDAYKAPTPVDVIE-------GDIRDIAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLN-PGGALVLSEK  165 (247)
T ss_pred             HHHHHhcCCCCCeEEEe-------CChhhCCC--CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcC-CCCEEEEEEe
Confidence            752       2466666       66666654  35999999999999853   479999999999 9999998664

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.67  E-value=1.1e-16  Score=130.23  Aligned_cols=100  Identities=25%  Similarity=0.334  Sum_probs=81.3

Q ss_pred             CCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC--------CCceEEecCCccchhhhhhccCCCCceeEEE
Q 024647           34 HELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL--------PNIRYELTSPAMSIAELEQNVAAQSTVDLVT  105 (265)
Q Consensus        34 ~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~  105 (265)
                      +++|||+|||+|.++..|++.++.|+|||+++.|++.|+..        .++.+..   ++...+++...   +.||.|+
T Consensus        90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l---~~~~~~~E~~~---~~fDaVv  163 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRL---EYEDTDVEGLT---GKFDAVV  163 (282)
T ss_pred             CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceee---ehhhcchhhcc---cccceee
Confidence            47799999999999999999999999999999999999863        1111111   12224555542   3599999


Q ss_pred             eccccccC-ChhHHHHHHHHHhcCCCcEEEEEecCC
Q 024647          106 IAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTV  140 (265)
Q Consensus       106 ~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~  140 (265)
                      |..+++++ |++.+++.+.+.|| |||.+++.+.+.
T Consensus       164 csevleHV~dp~~~l~~l~~~lk-P~G~lfittinr  198 (282)
T KOG1270|consen  164 CSEVLEHVKDPQEFLNCLSALLK-PNGRLFITTINR  198 (282)
T ss_pred             eHHHHHHHhCHHHHHHHHHHHhC-CCCceEeeehhh
Confidence            99999998 99999999999999 999999987763

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.67  E-value=2.9e-16  Score=136.08  Aligned_cols=97  Identities=20%  Similarity=0.096  Sum_probs=82.2

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHc-------CCCceEEecCCccchhhhhhccCCCCceeEE
Q 024647           33 NHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATK-------LPNIRYELTSPAMSIAELEQNVAAQSTVDLV  104 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~-------~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv  104 (265)
                      ++.+|||||||+|.++..+++.++ .|+|+|+|+.|+.+++.       ..++.+..       +++++++. +++||+|
T Consensus       122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~-------~d~e~lp~-~~~FD~V  193 (322)
T PRK15068        122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLP-------LGIEQLPA-LKAFDTV  193 (322)
T ss_pred             CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEe-------CCHHHCCC-cCCcCEE
Confidence            567999999999999999999886 49999999999875432       13566766       67778876 7789999


Q ss_pred             EeccccccC-ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          105 TIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       105 ~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      +|..++||. |+..++++++++|+ |||.+++.+.
T Consensus       194 ~s~~vl~H~~dp~~~L~~l~~~Lk-pGG~lvl~~~  227 (322)
T PRK15068        194 FSMGVLYHRRSPLDHLKQLKDQLV-PGGELVLETL  227 (322)
T ss_pred             EECChhhccCCHHHHHHHHHHhcC-CCcEEEEEEE
Confidence            999999888 89999999999999 9999988543

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.67  E-value=6e-16  Score=133.96  Aligned_cols=126  Identities=17%  Similarity=0.164  Sum_probs=98.6

Q ss_pred             HHHHHHHHhh-hCCC-CcHHHHHHHHhhC---CCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC---
Q 024647            5 FIKQAKQYAE-TRPN-YPEELFKFITSKT---TNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL---   74 (265)
Q Consensus         5 f~~~a~~Y~~-~rp~-y~~~l~~~l~~~~---~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~---   74 (265)
                      |...|..||. ..|. +.+.+.+.+....   .++.+|||||||+|.++..+++..  .+|+++|+|+.|++.+++.   
T Consensus        80 y~~lA~~YD~~~~~~~~~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~  159 (340)
T PLN02490         80 YRFLSIVYDHIINPGHWTEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL  159 (340)
T ss_pred             ccceeeecCCCeecCcchHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc
Confidence            3445667776 2333 3455655555433   356799999999999999998764  4799999999999998863   


Q ss_pred             CCceEEecCCccchhhhhhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647           75 PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        75 ~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      .++.+..       +|++++++++++||+|+++.++|++ ++..+++++.++|+ |||.+++...
T Consensus       160 ~~i~~i~-------gD~e~lp~~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLk-PGG~LvIi~~  216 (340)
T PLN02490        160 KECKIIE-------GDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLK-IGGKACLIGP  216 (340)
T ss_pred             cCCeEEe-------ccHHhCCCCCCceeEEEEcChhhhCCCHHHHHHHHHHhcC-CCcEEEEEEe
Confidence            3555555       7888888888899999999999887 88999999999999 9999987554

>TIGR00452 methyltransferase, putative

Probab=99.66  E-value=1.7e-16  Score=136.27  Aligned_cols=98  Identities=17%  Similarity=0.066  Sum_probs=80.0

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHc-------CCCceEEecCCccchhhhhhccCCCCceeE
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATK-------LPNIRYELTSPAMSIAELEQNVAAQSTVDL  103 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~-------~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dl  103 (265)
                      .++++|||||||+|.++..++..++ .|+|+|+|+.|+.+++.       ..++.+..       .++++++. ..+||+
T Consensus       120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~-------~~ie~lp~-~~~FD~  191 (314)
T TIGR00452       120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEP-------LGIEQLHE-LYAFDT  191 (314)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEE-------CCHHHCCC-CCCcCE
Confidence            3568999999999999999998886 59999999999876431       13445555       55667764 358999


Q ss_pred             EEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          104 VTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       104 v~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      |+|..++||. ++..++++++++|+ |||.|++.+.
T Consensus       192 V~s~gvL~H~~dp~~~L~el~r~Lk-pGG~Lvletl  226 (314)
T TIGR00452       192 VFSMGVLYHRKSPLEHLKQLKHQLV-IKGELVLETL  226 (314)
T ss_pred             EEEcchhhccCCHHHHHHHHHHhcC-CCCEEEEEEE
Confidence            9999999888 89999999999999 9999998654

Known examples to date are restricted to the proteobacteria.

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.66  E-value=6.1e-16  Score=121.38  Aligned_cols=136  Identities=22%  Similarity=0.208  Sum_probs=98.0

Q ss_pred             HhhhCCCCcHHHHHHHHhhCCCC--CeEEEEcCCcchhHHHHH-hcCCcEEEEcCCHHHHHHHHc------CCCce-EEe
Q 024647           12 YAETRPNYPEELFKFITSKTTNH--ELAWDVGTGSGQAAASLS-GIFENVIGTETSPKQIEFATK------LPNIR-YEL   81 (265)
Q Consensus        12 Y~~~rp~y~~~l~~~l~~~~~~~--~~vlDvGcG~G~~~~~l~-~~~~~v~~vD~s~~~~~~a~~------~~~~~-~~~   81 (265)
                      |++....|-.+++.-+.....+.  ..|||||||||..-...- ....+|+++|+++.|-+.+.+      ..++. |+.
T Consensus        53 yne~~~~ykrelFs~i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvv  132 (252)
T KOG4300|consen   53 YNEIADSYKRELFSGIYYFLGKSGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVV  132 (252)
T ss_pred             HHHHHHHHHHHHHhhhHHHhcccCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEe
Confidence            33333333445555544333322  347999999997655443 356789999999999988764      24455 555


Q ss_pred             cCCccchhhhhhcc-CCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHhhccccc
Q 024647           82 TSPAMSIAELEQNV-AAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQPFYT  156 (265)
Q Consensus        82 ~~~~~~~~d~~~~~-~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~~~~~~  156 (265)
                             ++.++++ ++++++|.|++.+++.-. |+.+.|+++.|+|| |||+++++...... ..-+..++++...
T Consensus       133 -------a~ge~l~~l~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLR-pgG~iifiEHva~~-y~~~n~i~q~v~e  200 (252)
T KOG4300|consen  133 -------ADGENLPQLADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLR-PGGRIIFIEHVAGE-YGFWNRILQQVAE  200 (252)
T ss_pred             -------echhcCcccccCCeeeEEEEEEEeccCCHHHHHHHHHHhcC-CCcEEEEEeccccc-chHHHHHHHHHhc
Confidence                   6778887 789999999999999888 99999999999999 99999998876544 3555666665443

>TIGR00740 methyltransferase, putative

Probab=99.65  E-value=2e-15  Score=126.01  Aligned_cols=124  Identities=17%  Similarity=0.245  Sum_probs=93.5

Q ss_pred             HH-HHHHHHhhh----CCCCcHHHHHHHHh----hCCCCCeEEEEcCCcchhHHHHHhcC----CcEEEEcCCHHHHHHH
Q 024647            5 FI-KQAKQYAET----RPNYPEELFKFITS----KTTNHELAWDVGTGSGQAAASLSGIF----ENVIGTETSPKQIEFA   71 (265)
Q Consensus         5 f~-~~a~~Y~~~----rp~y~~~l~~~l~~----~~~~~~~vlDvGcG~G~~~~~l~~~~----~~v~~vD~s~~~~~~a   71 (265)
                      |+ ..|..|+..    .|.| ..++..+..    ..+++.+|||+|||+|..+..+++++    .+++|+|+|+.|++.|
T Consensus        17 ~~~~~a~~y~~~~~~~~p~y-~~~~~~~~~l~~~~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a   95 (239)
T TIGR00740        17 FDENVAEVFPDMIQRSVPGY-SNIITAIGMLAERFVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERC   95 (239)
T ss_pred             cChHHHHhCcchhhccCCCH-HHHHHHHHHHHHHhCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHH
Confidence            44 357888874    3666 344444332    22466789999999999999998753    4699999999999988


Q ss_pred             HcC-------CCceEEecCCccchhhhhhccCCCCceeEEEeccccccCC---hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           72 TKL-------PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFD---LPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        72 ~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~---~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      ++.       .++++..       +|+..++++  .+|+|+++.++||++   +..+++++.++|+ |||.+++..+.
T Consensus        96 ~~~~~~~~~~~~v~~~~-------~d~~~~~~~--~~d~v~~~~~l~~~~~~~~~~~l~~i~~~Lk-pgG~l~i~d~~  163 (239)
T TIGR00740        96 RQHIAAYHSEIPVEILC-------NDIRHVEIK--NASMVILNFTLQFLPPEDRIALLTKIYEGLN-PNGVLVLSEKF  163 (239)
T ss_pred             HHHHHhcCCCCCeEEEE-------CChhhCCCC--CCCEEeeecchhhCCHHHHHHHHHHHHHhcC-CCeEEEEeecc
Confidence            752       2455665       677777544  589999999999984   3679999999999 99999987653

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.64  E-value=4.6e-17  Score=117.14  Aligned_cols=90  Identities=23%  Similarity=0.368  Sum_probs=57.9

Q ss_pred             EEEcCCcchhHHHHHhc--CCcEEEEcCCHHHHHHHHcC------CCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647           38 WDVGTGSGQAAASLSGI--FENVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA  109 (265)
Q Consensus        38 lDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~  109 (265)
                      ||+|||+|.++..+.+.  ..+++|+|+|+.|++.++++      .+........    .+.... ...++||+|++..+
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~fD~V~~~~v   75 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDV----LDLFDY-DPPESFDLVVASNV   75 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--S----SS---C-CC----SEEEEE-T
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeec----CChhhc-ccccccceehhhhh
Confidence            79999999999999998  45799999999999877652      1222333211    222111 12259999999999


Q ss_pred             cccC-ChhHHHHHHHHHhcCCCcEE
Q 024647          110 MHWF-DLPQFYNQVKWVLKKPNGVI  133 (265)
Q Consensus       110 ~~~~-~~~~~l~~~~~~Lk~pgG~l  133 (265)
                      +||+ ++..+++++.++|+ |||.|
T Consensus        76 l~~l~~~~~~l~~~~~~L~-pgG~l   99 (99)
T PF08242_consen   76 LHHLEDIEAVLRNIYRLLK-PGGIL   99 (99)
T ss_dssp             TS--S-HHHHHHHHTTT-T-SS-EE
T ss_pred             HhhhhhHHHHHHHHHHHcC-CCCCC
Confidence            9999 88999999999999 99986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.64  E-value=3e-15  Score=124.58  Aligned_cols=130  Identities=19%  Similarity=0.241  Sum_probs=98.7

Q ss_pred             hHHHHHHHHHhhhC----CCCcHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHc
Q 024647            3 ELFIKQAKQYAETR----PNYPEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATK   73 (265)
Q Consensus         3 ~~f~~~a~~Y~~~r----p~y~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~   73 (265)
                      +.|+..+.+|+...    ..+.......+....  .++.+|||+|||+|..+..+++.+   .+++++|+++.+++.+++
T Consensus        15 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~   94 (239)
T PRK00216         15 EMFDSIAPKYDLMNDLLSFGLHRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGRE   94 (239)
T ss_pred             HHHHHhhhhHHHHHHHHhcCCcHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHH
Confidence            57888899997522    122233333333322  345789999999999999999877   579999999999998876


Q ss_pred             C-------CCceEEecCCccchhhhhhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecCC
Q 024647           74 L-------PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTV  140 (265)
Q Consensus        74 ~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~  140 (265)
                      .       .++.+..       +|+...+.+.++||+|+++.++|+. ++..+++++.++|+ |||.+++.....
T Consensus        95 ~~~~~~~~~~~~~~~-------~d~~~~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~-~gG~li~~~~~~  161 (239)
T PRK00216         95 KLRDLGLSGNVEFVQ-------GDAEALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLK-PGGRLVILEFSK  161 (239)
T ss_pred             hhcccccccCeEEEe-------cccccCCCCCCCccEEEEecccccCCCHHHHHHHHHHhcc-CCcEEEEEEecC
Confidence            3       2345554       5666666667789999999999988 88999999999999 999998866543

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.63  E-value=2.4e-16  Score=113.83  Aligned_cols=87  Identities=28%  Similarity=0.544  Sum_probs=70.9

Q ss_pred             EEEEcCCcchhHHHHHhcC-----CcEEEEcCCHHHHHHHHcC-----CCceEEecCCccchhhhhhccCCCCceeEEEe
Q 024647           37 AWDVGTGSGQAAASLSGIF-----ENVIGTETSPKQIEFATKL-----PNIRYELTSPAMSIAELEQNVAAQSTVDLVTI  106 (265)
Q Consensus        37 vlDvGcG~G~~~~~l~~~~-----~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~  106 (265)
                      |||+|||+|..++.+.+.+     .+++|+|+|+.|++.+++.     .++++.+       +|+.+++..+++||+|++
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~-------~D~~~l~~~~~~~D~v~~   73 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQ-------ADARDLPFSDGKFDLVVC   73 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEE-------SCTTCHHHHSSSEEEEEE
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEE-------CCHhHCcccCCCeeEEEE
Confidence            7999999999999999886     6799999999999998762     4677777       666777777789999999


Q ss_pred             cc-ccccCCh---hHHHHHHHHHhcCCCc
Q 024647          107 AQ-AMHWFDL---PQFYNQVKWVLKKPNG  131 (265)
Q Consensus       107 ~~-~~~~~~~---~~~l~~~~~~Lk~pgG  131 (265)
                      .. .+|++++   ..+++++.++|+ |||
T Consensus        74 ~~~~~~~~~~~~~~~ll~~~~~~l~-pgG  101 (101)
T PF13649_consen   74 SGLSLHHLSPEELEALLRRIARLLR-PGG  101 (101)
T ss_dssp             -TTGGGGSSHHHHHHHHHHHHHTEE-EEE
T ss_pred             cCCccCCCCHHHHHHHHHHHHHHhC-CCC
Confidence            55 5888853   579999999999 998

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.63  E-value=2.8e-15  Score=121.19  Aligned_cols=107  Identities=14%  Similarity=0.218  Sum_probs=81.2

Q ss_pred             cHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC---CC--ceEEecCCccchhhhhhc
Q 024647           20 PEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL---PN--IRYELTSPAMSIAELEQN   94 (265)
Q Consensus        20 ~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---~~--~~~~~~~~~~~~~d~~~~   94 (265)
                      ...+.+.+..  .++.+|||+|||+|..+..+++++.+|+|+|+|+.|++.+++.   .+  +.+..       .|+...
T Consensus        19 ~~~l~~~~~~--~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~-------~d~~~~   89 (195)
T TIGR00477        19 HSAVREAVKT--VAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDA-------YDINAA   89 (195)
T ss_pred             hHHHHHHhcc--CCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEe-------ccchhc
Confidence            3445544432  3457899999999999999999999999999999999987642   22  33333       455544


Q ss_pred             cCCCCceeEEEeccccccCC---hhHHHHHHHHHhcCCCcEEEEEe
Q 024647           95 VAAQSTVDLVTIAQAMHWFD---LPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        95 ~~~~~~~Dlv~~~~~~~~~~---~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      ++ +++||+|+++.++|+++   ...+++++.++|+ |||.+++..
T Consensus        90 ~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~lli~~  133 (195)
T TIGR00477        90 AL-NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTR-PGGYNLIVA  133 (195)
T ss_pred             cc-cCCCCEEEEecccccCCHHHHHHHHHHHHHHhC-CCcEEEEEE
Confidence            44 35799999999999884   3579999999999 999966543

Part of a tellurite-reducing operon tehA and tehB

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.63  E-value=6e-15  Score=121.45  Aligned_cols=131  Identities=24%  Similarity=0.267  Sum_probs=101.2

Q ss_pred             hhHHHHHHHHHhhhCCCCc----HHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCC---cEEEEcCCHHHHHHHH
Q 024647            2 AELFIKQAKQYAETRPNYP----EELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFE---NVIGTETSPKQIEFAT   72 (265)
Q Consensus         2 ~~~f~~~a~~Y~~~rp~y~----~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~   72 (265)
                      .+.|+..+.+|+.....+.    ......+....  .++.+|||+|||+|..+..+++.++   +++++|+++.+++.++
T Consensus         2 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~   81 (223)
T TIGR01934         2 QEMFDRIAPKYDLLNDLLSFGLHRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAK   81 (223)
T ss_pred             HhHHHHHHhhhhHHHHHHhcccHHHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHH
Confidence            3679999999999754321    12222222222  3568999999999999999998765   7999999999999887


Q ss_pred             cC----CCceEEecCCccchhhhhhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecCC
Q 024647           73 KL----PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTV  140 (265)
Q Consensus        73 ~~----~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~  140 (265)
                      +.    .++.+..       +|+.+.+.+.++||+|+++..+|+. ++..+++++.++|+ |||.+++.....
T Consensus        82 ~~~~~~~~i~~~~-------~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~~~~  146 (223)
T TIGR01934        82 KKSELPLNIEFIQ-------ADAEALPFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLK-PGGRLVILEFSK  146 (223)
T ss_pred             HHhccCCCceEEe-------cchhcCCCCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcC-CCcEEEEEEecC
Confidence            53    2455555       6666666667789999999999988 88999999999999 999999876643

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.62  E-value=2.8e-15  Score=137.18  Aligned_cols=100  Identities=21%  Similarity=0.318  Sum_probs=84.7

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhc-CCcEEEEcCCHHHHHHHHcC-----CCceEEecCCccchhhhhhccCCCCceeEEE
Q 024647           32 TNHELAWDVGTGSGQAAASLSGI-FENVIGTETSPKQIEFATKL-----PNIRYELTSPAMSIAELEQNVAAQSTVDLVT  105 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~  105 (265)
                      .++.+|||||||+|..+..+++. +.+|+|+|+|+.|++.|++.     .++.+..       +|+...++++++||+|+
T Consensus       265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~-------~d~~~~~~~~~~fD~I~  337 (475)
T PLN02336        265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEV-------ADCTKKTYPDNSFDVIY  337 (475)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEE-------cCcccCCCCCCCEEEEE
Confidence            45678999999999999999876 45899999999999988752     2455655       66677777778999999


Q ss_pred             eccccccC-ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          106 IAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       106 ~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +..+++|+ ++..+++++.++|+ |||.+++.++.
T Consensus       338 s~~~l~h~~d~~~~l~~~~r~Lk-pgG~l~i~~~~  371 (475)
T PLN02336        338 SRDTILHIQDKPALFRSFFKWLK-PGGKVLISDYC  371 (475)
T ss_pred             ECCcccccCCHHHHHHHHHHHcC-CCeEEEEEEec
Confidence            99999888 99999999999999 99999987654

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.62  E-value=6.3e-15  Score=119.72  Aligned_cols=98  Identities=20%  Similarity=0.245  Sum_probs=76.8

Q ss_pred             hCCCCCeEEEEcCCcchhHHHHHhc--CCcEEEEcCCHHHHHHHHc-CCCceEEecCCccchhhhhhccCCCCceeEEEe
Q 024647           30 KTTNHELAWDVGTGSGQAAASLSGI--FENVIGTETSPKQIEFATK-LPNIRYELTSPAMSIAELEQNVAAQSTVDLVTI  106 (265)
Q Consensus        30 ~~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~  106 (265)
                      ..+++.+|||+|||+|..+..+++.  +.+++|+|+|+.|++.|++ .+++.+.+       +|+.+ ++++++||+|++
T Consensus        40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~-------~d~~~-~~~~~sfD~V~~  111 (204)
T TIGR03587        40 RLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQ-------GSLFD-PFKDNFFDLVLT  111 (204)
T ss_pred             hcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEE-------eeccC-CCCCCCEEEEEE
Confidence            4466788999999999999999887  4689999999999999986 46666666       55555 667889999999


Q ss_pred             ccccccCChh---HHHHHHHHHhcCCCcEEEEEec
Q 024647          107 AQAMHWFDLP---QFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       107 ~~~~~~~~~~---~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      +.++|++++.   .+++++.++++   +.+++..+
T Consensus       112 ~~vL~hl~p~~~~~~l~el~r~~~---~~v~i~e~  143 (204)
T TIGR03587       112 KGVLIHINPDNLPTAYRELYRCSN---RYILIAEY  143 (204)
T ss_pred             CChhhhCCHHHHHHHHHHHHhhcC---cEEEEEEe
Confidence            9999888644   56667777654   45555554

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.62  E-value=1.1e-15  Score=124.11  Aligned_cols=109  Identities=20%  Similarity=0.258  Sum_probs=84.7

Q ss_pred             HHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhh-hh
Q 024647           23 LFKFITSKTTNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAEL-EQ   93 (265)
Q Consensus        23 l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~-~~   93 (265)
                      ..++..-...+..+|||+|||+|..+..+++.++  +|+|+|+|+.|++.+++      ..++.+.+       +|+ +.
T Consensus        30 ~~~~~~~~~~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~-------~d~~~~  102 (202)
T PRK00121         30 PLDWAELFGNDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLC-------GDAVEV  102 (202)
T ss_pred             CCCHHHHcCCCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEe-------cCHHHH
Confidence            3334433334667899999999999999988764  69999999999998874      24666666       565 55


Q ss_pred             cc--CCCCceeEEEeccccccCC---------hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           94 NV--AAQSTVDLVTIAQAMHWFD---------LPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        94 ~~--~~~~~~Dlv~~~~~~~~~~---------~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      ++  +++++||+|++++..+|..         ...+++++.++|+ |||.|++....
T Consensus       103 l~~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lk-pgG~l~i~~~~  158 (202)
T PRK00121        103 LLDMFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLK-PGGEIHFATDW  158 (202)
T ss_pred             HHHHcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcC-CCCEEEEEcCC
Confidence            54  5678999999988777652         4679999999999 99999986654

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.62  E-value=4.8e-15  Score=126.03  Aligned_cols=100  Identities=24%  Similarity=0.344  Sum_probs=84.2

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcC-C--cEEEEcCCHHHHHHHHcC------CCceEEecCCccchhhhhhccCCCCcee
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIF-E--NVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAELEQNVAAQSTVD  102 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~-~--~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d~~~~~~~~~~~D  102 (265)
                      +++.+|||+|||+|..+..+++.. +  +|+++|+++.|++.|++.      .++.+..       +|++.+++++++||
T Consensus        76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~-------~d~~~l~~~~~~fD  148 (272)
T PRK11873         76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRL-------GEIEALPVADNSVD  148 (272)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEE-------cchhhCCCCCCcee
Confidence            467899999999999888777653 3  599999999999998752      3555555       77788887788999


Q ss_pred             EEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          103 LVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       103 lv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +|+++.++|+. +...+++++.++|| |||+|++.+..
T Consensus       149 ~Vi~~~v~~~~~d~~~~l~~~~r~Lk-pGG~l~i~~~~  185 (272)
T PRK11873        149 VIISNCVINLSPDKERVFKEAFRVLK-PGGRFAISDVV  185 (272)
T ss_pred             EEEEcCcccCCCCHHHHHHHHHHHcC-CCcEEEEEEee
Confidence            99999999988 88899999999999 99999986553

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.59  E-value=1.5e-14  Score=115.59  Aligned_cols=97  Identities=23%  Similarity=0.201  Sum_probs=78.3

Q ss_pred             hCCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhccCCCCce
Q 024647           30 KTTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQNVAAQSTV  101 (265)
Q Consensus        30 ~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~~~~~~~~  101 (265)
                      ..+++.+|||+|||+|..+..++...  .+|+++|+|+.|++.+++      ..++++..       +|+++++. .++|
T Consensus        42 ~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~-------~d~~~~~~-~~~f  113 (187)
T PRK00107         42 YLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVH-------GRAEEFGQ-EEKF  113 (187)
T ss_pred             hcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEe-------ccHhhCCC-CCCc
Confidence            34557899999999999999998644  589999999999998875      23566666       66666654 6789


Q ss_pred             eEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          102 DLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       102 Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      |+|+++.   ..+.+.+++++.++|+ |||.+++...
T Consensus       114 DlV~~~~---~~~~~~~l~~~~~~Lk-pGG~lv~~~~  146 (187)
T PRK00107        114 DVVTSRA---VASLSDLVELCLPLLK-PGGRFLALKG  146 (187)
T ss_pred             cEEEEcc---ccCHHHHHHHHHHhcC-CCeEEEEEeC
Confidence            9999874   2367899999999999 9999998654

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.59  E-value=4.3e-15  Score=125.42  Aligned_cols=95  Identities=22%  Similarity=0.380  Sum_probs=74.8

Q ss_pred             CCCeEEEEcCCcch----hHHHHHhcC-------CcEEEEcCCHHHHHHHHcC---------------------------
Q 024647           33 NHELAWDVGTGSGQ----AAASLSGIF-------ENVIGTETSPKQIEFATKL---------------------------   74 (265)
Q Consensus        33 ~~~~vlDvGcG~G~----~~~~l~~~~-------~~v~~vD~s~~~~~~a~~~---------------------------   74 (265)
                      ++.+|||+|||||.    ++..+++.+       .+|+|+|+|+.|++.|++.                           
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            45689999999996    444555542       3699999999999999862                           


Q ss_pred             ------CCceEEecCCccchhhhhhccCCCCceeEEEeccccccCChh---HHHHHHHHHhcCCCcEEEE
Q 024647           75 ------PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLP---QFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus        75 ------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~---~~l~~~~~~Lk~pgG~l~~  135 (265)
                            .++.|.+       .|+.+.+.+.++||+|+|.+++|+++.+   .+++++.++|+ |||.|++
T Consensus       179 v~~~ir~~V~F~~-------~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~-pGG~L~l  240 (264)
T smart00138      179 VKPELKERVRFAK-------HNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALK-PGGYLFL  240 (264)
T ss_pred             EChHHhCcCEEee-------ccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhC-CCeEEEE
Confidence                  1344444       6666666567899999999999999533   69999999999 9999987

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK06922 hypothetical protein; Provisional

Probab=99.58  E-value=3.4e-14  Score=130.54  Aligned_cols=98  Identities=19%  Similarity=0.177  Sum_probs=80.0

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC-----CCceEEecCCccchhhhhhcc--CCCCceeE
Q 024647           33 NHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL-----PNIRYELTSPAMSIAELEQNV--AAQSTVDL  103 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~d~~~~~--~~~~~~Dl  103 (265)
                      ++.+|||+|||+|..+..+++.++  +|+|+|+|+.|++.|++.     .++.+..       +|+.+++  +++++||+
T Consensus       418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~-------gDa~dLp~~fedeSFDv  490 (677)
T PRK06922        418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIK-------GDAINLSSSFEKESVDT  490 (677)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEE-------cchHhCccccCCCCEEE
Confidence            568999999999999999988764  799999999999988752     2344454       5666665  57789999


Q ss_pred             EEeccccccC--------------ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          104 VTIAQAMHWF--------------DLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       104 v~~~~~~~~~--------------~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      |+++.++||+              +...+++++.++|| |||.+++.+.
T Consensus       491 VVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLK-PGGrLII~D~  538 (677)
T PRK06922        491 IVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLK-PGGRIIIRDG  538 (677)
T ss_pred             EEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcC-CCcEEEEEeC
Confidence            9999999864              24679999999999 9999998654

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.58  E-value=1.7e-14  Score=117.88  Aligned_cols=118  Identities=16%  Similarity=0.050  Sum_probs=84.6

Q ss_pred             HHHHHHHHhhC-CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCce-----------EEecCCccch
Q 024647           21 EELFKFITSKT-TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIR-----------YELTSPAMSI   88 (265)
Q Consensus        21 ~~l~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~-----------~~~~~~~~~~   88 (265)
                      +.+.+++.... +++.+|||+|||.|..+..|++++.+|+|+|+|+.+++.+....++.           .....+++..
T Consensus        21 ~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  100 (213)
T TIGR03840        21 PLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFC  100 (213)
T ss_pred             HHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEE
Confidence            34445444322 46679999999999999999999999999999999999853211111           1112233334


Q ss_pred             hhhhhccCC-CCceeEEEeccccccCCh---hHHHHHHHHHhcCCCcEEEEEecC
Q 024647           89 AELEQNVAA-QSTVDLVTIAQAMHWFDL---PQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        89 ~d~~~~~~~-~~~~Dlv~~~~~~~~~~~---~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +|+.+++.. .++||.|+...++|.+++   ...++.+.++|+ |||++++.++.
T Consensus       101 ~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLk-pgG~~ll~~~~  154 (213)
T TIGR03840       101 GDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLP-PGARQLLITLD  154 (213)
T ss_pred             ccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcC-CCCeEEEEEEE
Confidence            777665432 357999999888888844   468999999999 99987766554

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.57  E-value=2.1e-14  Score=117.10  Aligned_cols=100  Identities=14%  Similarity=0.111  Sum_probs=77.5

Q ss_pred             CCCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhc--------cCCCC
Q 024647           31 TTNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQN--------VAAQS   99 (265)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--------~~~~~   99 (265)
                      .+++.+|||+|||||.++..++++.   .+|+|||+++ |    ...+++.+.++++       ...        ++.++
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----~~~~~v~~i~~D~-------~~~~~~~~i~~~~~~~  116 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----DPIVGVDFLQGDF-------RDELVLKALLERVGDS  116 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----cCCCCcEEEecCC-------CChHHHHHHHHHhCCC
Confidence            4677899999999999999999875   3799999998 2    2346788888544       332        24567


Q ss_pred             ceeEEEeccccccC-Ch-----------hHHHHHHHHHhcCCCcEEEEEecCCCCC
Q 024647          100 TVDLVTIAQAMHWF-DL-----------PQFYNQVKWVLKKPNGVIATWCYTVPEV  143 (265)
Q Consensus       100 ~~Dlv~~~~~~~~~-~~-----------~~~l~~~~~~Lk~pgG~l~~~~~~~~~~  143 (265)
                      +||+|+++.+.||. ++           ..+++++.++|+ |||.|++..+....+
T Consensus       117 ~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lk-pGG~~vi~~~~~~~~  171 (209)
T PRK11188        117 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLA-PGGSFVVKVFQGEGF  171 (209)
T ss_pred             CCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcC-CCCEEEEEEecCcCH
Confidence            89999999888876 22           358899999999 999999877664443

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.57  E-value=9.4e-15  Score=115.12  Aligned_cols=97  Identities=18%  Similarity=0.320  Sum_probs=75.8

Q ss_pred             CCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc----CCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647           34 HELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK----LPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA  109 (265)
Q Consensus        34 ~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~----~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~  109 (265)
                      -.++||+|||.|.+|..|+.++.+++++|+|+..++.|++    .+++.+.+       .++.+. .|.++||+|+++..
T Consensus        44 y~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~-------~dvp~~-~P~~~FDLIV~SEV  115 (201)
T PF05401_consen   44 YRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQ-------ADVPEF-WPEGRFDLIVLSEV  115 (201)
T ss_dssp             EEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEE-------S-TTT----SS-EEEEEEES-
T ss_pred             cceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEE-------CcCCCC-CCCCCeeEEEEehH
Confidence            3679999999999999999999999999999999999985    37888888       555554 47789999999999


Q ss_pred             cccCC-hh---HHHHHHHHHhcCCCcEEEEEecC
Q 024647          110 MHWFD-LP---QFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       110 ~~~~~-~~---~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +|+++ .+   .++..+...|+ |||.+++-...
T Consensus       116 lYYL~~~~~L~~~l~~l~~~L~-pgG~LV~g~~r  148 (201)
T PF05401_consen  116 LYYLDDAEDLRAALDRLVAALA-PGGHLVFGHAR  148 (201)
T ss_dssp             GGGSSSHHHHHHHHHHHHHTEE-EEEEEEEEEE-
T ss_pred             hHcCCCHHHHHHHHHHHHHHhC-CCCEEEEEEec
Confidence            99994 33   57899999999 99999985553

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.56  E-value=3.3e-14  Score=121.76  Aligned_cols=107  Identities=18%  Similarity=0.312  Sum_probs=82.7

Q ss_pred             cHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC-----CCceEEecCCccchhhhhhc
Q 024647           20 PEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL-----PNIRYELTSPAMSIAELEQN   94 (265)
Q Consensus        20 ~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~d~~~~   94 (265)
                      .+++...+. . .++.+|||+|||+|..+..+++.+.+|+|+|+|+.|++.+++.     .++.+..       .|+...
T Consensus       109 ~~~~~~~~~-~-~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~-------~D~~~~  179 (287)
T PRK12335        109 HSEVLEAVQ-T-VKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGL-------YDINSA  179 (287)
T ss_pred             cHHHHHHhh-c-cCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEE-------echhcc
Confidence            345555443 2 3446899999999999999999999999999999999987642     1344444       555554


Q ss_pred             cCCCCceeEEEeccccccCC---hhHHHHHHHHHhcCCCcEEEEEe
Q 024647           95 VAAQSTVDLVTIAQAMHWFD---LPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        95 ~~~~~~~Dlv~~~~~~~~~~---~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      .+ +++||+|++..++|+++   ...+++++.++|+ |||.+++..
T Consensus       180 ~~-~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~Lk-pgG~~l~v~  223 (287)
T PRK12335        180 SI-QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTN-PGGYNLIVC  223 (287)
T ss_pred             cc-cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcC-CCcEEEEEE
Confidence            43 67899999999999885   3579999999999 999976643

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.56  E-value=3.4e-14  Score=118.76  Aligned_cols=98  Identities=21%  Similarity=0.311  Sum_probs=81.2

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcC-CcEEEEcCCHHHHHHHHcC------C-CceEEecCCccchhhhhhccCCCCceeE
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIF-ENVIGTETSPKQIEFATKL------P-NIRYELTSPAMSIAELEQNVAAQSTVDL  103 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~------~-~~~~~~~~~~~~~~d~~~~~~~~~~~Dl  103 (265)
                      .++++|||||||.|.+++.+++++ .+|+|+++|+++.+.+++.      . ++++..       .|..++   .+.||-
T Consensus        71 ~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l-------~d~rd~---~e~fDr  140 (283)
T COG2230          71 KPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRL-------QDYRDF---EEPFDR  140 (283)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEe-------cccccc---ccccce
Confidence            688999999999999999999986 7999999999999988762      2 454544       444444   345999


Q ss_pred             EEeccccccC-C--hhHHHHHHHHHhcCCCcEEEEEecCC
Q 024647          104 VTIAQAMHWF-D--LPQFYNQVKWVLKKPNGVIATWCYTV  140 (265)
Q Consensus       104 v~~~~~~~~~-~--~~~~l~~~~~~Lk~pgG~l~~~~~~~  140 (265)
                      |++..+++++ .  .+.+++.+.++|+ |||.+++-+...
T Consensus       141 IvSvgmfEhvg~~~~~~ff~~~~~~L~-~~G~~llh~I~~  179 (283)
T COG2230         141 IVSVGMFEHVGKENYDDFFKKVYALLK-PGGRMLLHSITG  179 (283)
T ss_pred             eeehhhHHHhCcccHHHHHHHHHhhcC-CCceEEEEEecC
Confidence            9999999999 3  6789999999999 999998765543

>PRK06202 hypothetical protein; Provisional

Probab=99.55  E-value=2e-14  Score=119.37  Aligned_cols=98  Identities=19%  Similarity=0.280  Sum_probs=74.5

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhc----C--CcEEEEcCCHHHHHHHHcC---CCceEEecCCccchhhhhhccCCCCcee
Q 024647           32 TNHELAWDVGTGSGQAAASLSGI----F--ENVIGTETSPKQIEFATKL---PNIRYELTSPAMSIAELEQNVAAQSTVD  102 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~----~--~~v~~vD~s~~~~~~a~~~---~~~~~~~~~~~~~~~d~~~~~~~~~~~D  102 (265)
                      .++.+|||+|||+|.++..|++.    +  .+|+|+|+|+.|++.|++.   .++.+..       .+.+.++.++++||
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~-------~~~~~l~~~~~~fD  131 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQ-------AVSDELVAEGERFD  131 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEE-------EecccccccCCCcc
Confidence            45678999999999999998753    3  3799999999999999863   3455555       33444555678999


Q ss_pred             EEEeccccccC-Ch--hHHHHHHHHHhcCCCcEEEEEecC
Q 024647          103 LVTIAQAMHWF-DL--PQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       103 lv~~~~~~~~~-~~--~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +|+++.++||+ +.  ..+++++.++++  + .+++....
T Consensus       132 ~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~-~~~i~dl~  168 (232)
T PRK06202        132 VVTSNHFLHHLDDAEVVRLLADSAALAR--R-LVLHNDLI  168 (232)
T ss_pred             EEEECCeeecCChHHHHHHHHHHHHhcC--e-eEEEeccc
Confidence            99999999999 43  469999999987  3 34444444

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.55  E-value=1.2e-13  Score=110.07  Aligned_cols=111  Identities=19%  Similarity=0.227  Sum_probs=81.9

Q ss_pred             hCCCCcHHHHHHHH-----h-hCCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHc------CCCceEE
Q 024647           15 TRPNYPEELFKFIT-----S-KTTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATK------LPNIRYE   80 (265)
Q Consensus        15 ~rp~y~~~l~~~l~-----~-~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~------~~~~~~~   80 (265)
                      .||.-+++......     . ...++.+|||+|||+|.++..++..+  .+|+++|+|+.|++.+++      ..++.++
T Consensus        18 ~~~~~~~~~~~~~~~d~i~~~~~~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i   97 (181)
T TIGR00138        18 TSLKTPEEIWERHILDSLKLLEYLDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIV   97 (181)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEE
Confidence            67765555533221     1 11246899999999999999988765  469999999999987764      2456666


Q ss_pred             ecCCccchhhhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647           81 LTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        81 ~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      +       +|++++. ..++||+|++.. +  .+...+++.+.++|+ |||.++++.
T Consensus        98 ~-------~d~~~~~-~~~~fD~I~s~~-~--~~~~~~~~~~~~~Lk-pgG~lvi~~  142 (181)
T TIGR00138        98 N-------GRAEDFQ-HEEQFDVITSRA-L--ASLNVLLELTLNLLK-VGGYFLAYK  142 (181)
T ss_pred             e-------cchhhcc-ccCCccEEEehh-h--hCHHHHHHHHHHhcC-CCCEEEEEc
Confidence            6       6666653 457899999875 3  256778999999999 999999874

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.54  E-value=7.7e-15  Score=117.02  Aligned_cols=131  Identities=21%  Similarity=0.301  Sum_probs=101.1

Q ss_pred             hhHHHHHHHHHhh---hCCCC--cHHHHHHHHhhCC-CCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCC
Q 024647            2 AELFIKQAKQYAE---TRPNY--PEELFKFITSKTT-NHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLP   75 (265)
Q Consensus         2 ~~~f~~~a~~Y~~---~rp~y--~~~l~~~l~~~~~-~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~   75 (265)
                      +..|+.-|++++.   -.-.|  |..+.++|..... +-.++||+|||||..+..|.....+++|+|+|..|++.|.+..
T Consensus        88 e~LFD~~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg  167 (287)
T COG4976          88 ETLFDQYAERFDHILVDKLGYSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKG  167 (287)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhcc
Confidence            4678888888776   12222  6677777765543 3578999999999999999999999999999999999998643


Q ss_pred             CceEEecCCccchhhhhhc-c-CCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           76 NIRYELTSPAMSIAELEQN-V-AAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        76 ~~~~~~~~~~~~~~d~~~~-~-~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      .....      .++++..+ + ..++.||+|++..++.++ +.+.++.-+...|+ |||.|+++.-.
T Consensus       168 ~YD~L------~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~-~gGlfaFSvE~  227 (287)
T COG4976         168 LYDTL------YVAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLA-PGGLFAFSVET  227 (287)
T ss_pred             chHHH------HHHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcC-CCceEEEEecc
Confidence            22111      11444422 1 467789999999999999 99999999999999 99999986554

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.54  E-value=8.2e-14  Score=110.19  Aligned_cols=111  Identities=22%  Similarity=0.300  Sum_probs=81.1

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcCCc--EEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhccCCCCceeEE
Q 024647           33 NHELAWDVGTGSGQAAASLSGIFEN--VIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQNVAAQSTVDLV  104 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~~--v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv  104 (265)
                      +..+|||+|||+|.++..+++++++  |+++|+++.+++.+++      ..++.+..       .|+.+. .++++||+|
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~-------~d~~~~-~~~~~fD~I  102 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQ-------SDLFEA-LPDGKFDLI  102 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEE-------SSTTTT-CCTTCEEEE
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccc-------cccccc-ccccceeEE
Confidence            5678999999999999999999876  9999999999998875      13366666       343332 346899999


Q ss_pred             EeccccccCC------hhHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHhhc
Q 024647          105 TIAQAMHWFD------LPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQ  152 (265)
Q Consensus       105 ~~~~~~~~~~------~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~~  152 (265)
                      +++-.+|.-.      ...+++++.+.|+ |||.+++...........+.+.|.
T Consensus       103 v~NPP~~~~~~~~~~~~~~~i~~a~~~Lk-~~G~l~lv~~~~~~~~~~l~~~f~  155 (170)
T PF05175_consen  103 VSNPPFHAGGDDGLDLLRDFIEQARRYLK-PGGRLFLVINSHLGYERLLKELFG  155 (170)
T ss_dssp             EE---SBTTSHCHHHHHHHHHHHHHHHEE-EEEEEEEEEETTSCHHHHHHHHHS
T ss_pred             EEccchhcccccchhhHHHHHHHHHHhcc-CCCEEEEEeecCCChHHHHHHhcC
Confidence            9999888763      3578999999999 999998755443332333444443

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.53  E-value=5.1e-14  Score=113.76  Aligned_cols=100  Identities=20%  Similarity=0.273  Sum_probs=80.2

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhcc---CCCCc
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQNV---AAQST  100 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~~---~~~~~  100 (265)
                      +...++||||||+|.++..+++.++  +|+|+|+++.|++.|++      ..|+.++.       +|+..++   +++++
T Consensus        15 ~~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~-------~d~~~~~~~~~~~~~   87 (194)
T TIGR00091        15 NKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLC-------GDANELLDKFFPDGS   87 (194)
T ss_pred             CCCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEc-------cCHHHHHHhhCCCCc
Confidence            3456899999999999999998865  69999999999998764      25777777       4444432   45668


Q ss_pred             eeEEEeccccccCCh---------hHHHHHHHHHhcCCCcEEEEEecC
Q 024647          101 VDLVTIAQAMHWFDL---------PQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       101 ~Dlv~~~~~~~~~~~---------~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +|.|++++..+|...         ..+++++.++|| |||.|++.+..
T Consensus        88 ~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~Lk-pgG~l~~~td~  134 (194)
T TIGR00091        88 LSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLK-KGGVIHFKTDN  134 (194)
T ss_pred             eeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhC-CCCEEEEEeCC
Confidence            999999988888632         469999999999 99999886644

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.52  E-value=1.9e-14  Score=118.81  Aligned_cols=96  Identities=22%  Similarity=0.266  Sum_probs=79.0

Q ss_pred             CeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCCCCceeEEE
Q 024647           35 ELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAAQSTVDLVT  105 (265)
Q Consensus        35 ~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~  105 (265)
                      ++|||+|||+|..+..+++.+  .+|+|+|+|+.+++.++++       .++.+..       .|+...+. .++||+|+
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~-------~d~~~~~~-~~~fD~I~   72 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFY-------RDSAKDPF-PDTYDLVF   72 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEe-------cccccCCC-CCCCCEee
Confidence            369999999999999999876  4799999999999988752       2355655       55544443 35899999


Q ss_pred             eccccccC-ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          106 IAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       106 ~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +..++|++ ++..+++++.++|+ |||.+++..+.
T Consensus        73 ~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~  106 (224)
T smart00828       73 GFEVIHHIKDKMDLFSNISRHLK-DGGHLVLADFI  106 (224)
T ss_pred             hHHHHHhCCCHHHHHHHHHHHcC-CCCEEEEEEcc
Confidence            99999988 88999999999999 99999986653

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.52  E-value=5.2e-14  Score=128.82  Aligned_cols=97  Identities=16%  Similarity=0.214  Sum_probs=81.6

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc----CCCceEEecCCccchhhhh--hccCCCCceeEEEe
Q 024647           33 NHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK----LPNIRYELTSPAMSIAELE--QNVAAQSTVDLVTI  106 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~----~~~~~~~~~~~~~~~~d~~--~~~~~~~~~Dlv~~  106 (265)
                      +..+|||+|||+|.++..+++.+.+|+|+|+|+.|++.++.    .+++.+.+       +|+.  .+++++++||+|++
T Consensus        37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~-------~d~~~~~~~~~~~~fD~I~~  109 (475)
T PLN02336         37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGHYKNVKFMC-------ADVTSPDLNISDGSVDLIFS  109 (475)
T ss_pred             CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhccCCceEEEE-------ecccccccCCCCCCEEEEeh
Confidence            45689999999999999999998999999999999998764    24667777       4443  35567789999999


Q ss_pred             ccccccCC---hhHHHHHHHHHhcCCCcEEEEEe
Q 024647          107 AQAMHWFD---LPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       107 ~~~~~~~~---~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      +.++||+.   ...+++++.++|+ |||.+++..
T Consensus       110 ~~~l~~l~~~~~~~~l~~~~r~Lk-~gG~l~~~d  142 (475)
T PLN02336        110 NWLLMYLSDKEVENLAERMVKWLK-VGGYIFFRE  142 (475)
T ss_pred             hhhHHhCCHHHHHHHHHHHHHhcC-CCeEEEEEe
Confidence            99999983   3689999999999 999998854

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.50  E-value=2e-13  Score=115.51  Aligned_cols=105  Identities=20%  Similarity=0.312  Sum_probs=75.9

Q ss_pred             HHHHHhhC--CCCCeEEEEcCCcchhHHHHHhc-CCcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhh
Q 024647           24 FKFITSKT--TNHELAWDVGTGSGQAAASLSGI-FENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQ   93 (265)
Q Consensus        24 ~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~   93 (265)
                      ++.+....  +++++|||||||.|.++..++++ +.+|+|+.+|+.+.+.+++.       ..+.+..       .|..+
T Consensus        51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~-------~D~~~  123 (273)
T PF02353_consen   51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRL-------QDYRD  123 (273)
T ss_dssp             HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEE-------S-GGG
T ss_pred             HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEE-------eeccc
Confidence            33444443  57899999999999999999998 77999999999999988741       2455555       56555


Q ss_pred             ccCCCCceeEEEeccccccC---ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           94 NVAAQSTVDLVTIAQAMHWF---DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        94 ~~~~~~~~Dlv~~~~~~~~~---~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      ++   .+||.|++..++.++   +.+.+++++.++|+ |||.+++-...
T Consensus       124 ~~---~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lk-pgG~~~lq~i~  168 (273)
T PF02353_consen  124 LP---GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLK-PGGRLVLQTIT  168 (273)
T ss_dssp             ------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSE-TTEEEEEEEEE
T ss_pred             cC---CCCCEEEEEechhhcChhHHHHHHHHHHHhcC-CCcEEEEEecc
Confidence            53   289999999999888   34689999999999 99999875443

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=99.50  E-value=1.5e-13  Score=109.61  Aligned_cols=106  Identities=26%  Similarity=0.359  Sum_probs=88.5

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcC-CcEEEEcCCHHHHHHHHcC--CCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIF-ENVIGTETSPKQIEFATKL--PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~--~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      +....++|||||-|.+.+.|...+ .+++-+|.|-.|++.++..  +.+.....     .+|-+.+++..+++|+|+++.
T Consensus        71 k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~-----v~DEE~Ldf~ens~DLiisSl  145 (325)
T KOG2940|consen   71 KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYF-----VGDEEFLDFKENSVDLIISSL  145 (325)
T ss_pred             hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEE-----ecchhcccccccchhhhhhhh
Confidence            445679999999999999998765 5799999999999999864  44333221     167788889999999999999


Q ss_pred             ccccC-ChhHHHHHHHHHhcCCCcEEEEEecCCCCC
Q 024647          109 AMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTVPEV  143 (265)
Q Consensus       109 ~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~  143 (265)
                      .+||. |.+..+-+|...|| |+|.|+....+..++
T Consensus       146 slHW~NdLPg~m~~ck~~lK-PDg~FiasmlggdTL  180 (325)
T KOG2940|consen  146 SLHWTNDLPGSMIQCKLALK-PDGLFIASMLGGDTL  180 (325)
T ss_pred             hhhhhccCchHHHHHHHhcC-CCccchhHHhccccH
Confidence            99999 99999999999999 999999877765554

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.49  E-value=1.5e-13  Score=110.97  Aligned_cols=94  Identities=15%  Similarity=0.157  Sum_probs=75.1

Q ss_pred             HHHhhCCCCCeEEEEcCCcchhHHHHHhcC-CcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhh-c-cCCCCcee
Q 024647           26 FITSKTTNHELAWDVGTGSGQAAASLSGIF-ENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQ-N-VAAQSTVD  102 (265)
Q Consensus        26 ~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~~D  102 (265)
                      .+....+++.+|||+|||+|.++..+++.. .+++|+|+|+.|++.++. .++.+..       +|+++ + ++++++||
T Consensus         6 ~i~~~i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~-~~~~~~~-------~d~~~~l~~~~~~sfD   77 (194)
T TIGR02081         6 SILNLIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA-RGVNVIQ-------GDLDEGLEAFPDKSFD   77 (194)
T ss_pred             HHHHhcCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH-cCCeEEE-------EEhhhcccccCCCCcC
Confidence            344445667899999999999999997653 578999999999999875 4567766       44443 3 25677999


Q ss_pred             EEEeccccccC-ChhHHHHHHHHHhc
Q 024647          103 LVTIAQAMHWF-DLPQFYNQVKWVLK  127 (265)
Q Consensus       103 lv~~~~~~~~~-~~~~~l~~~~~~Lk  127 (265)
                      +|+++.++||+ |+..+++++.|+++
T Consensus        78 ~Vi~~~~l~~~~d~~~~l~e~~r~~~  103 (194)
T TIGR02081        78 YVILSQTLQATRNPEEILDEMLRVGR  103 (194)
T ss_pred             EEEEhhHhHcCcCHHHHHHHHHHhCC
Confidence            99999999999 88999999888766

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.49  E-value=4.6e-13  Score=99.86  Aligned_cols=106  Identities=21%  Similarity=0.311  Sum_probs=77.7

Q ss_pred             HHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhh
Q 024647           22 ELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAEL   91 (265)
Q Consensus        22 ~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~   91 (265)
                      ++...+....  .++.+|||+|||+|..+..++++.+  +|+++|+|+.+++.+++      ..++.+..       +|+
T Consensus         6 ~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-------~~~   78 (124)
T TIGR02469         6 EVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVE-------GDA   78 (124)
T ss_pred             HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEe-------ccc
Confidence            3444444443  3457899999999999999998764  79999999999998864      23555555       333


Q ss_pred             hh-ccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647           92 EQ-NVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        92 ~~-~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      .. .+...++||.|++....+.  ...+++++.+.|+ |||.+++..
T Consensus        79 ~~~~~~~~~~~D~v~~~~~~~~--~~~~l~~~~~~Lk-~gG~li~~~  122 (124)
T TIGR02469        79 PEALEDSLPEPDRVFIGGSGGL--LQEILEAIWRRLR-PGGRIVLNA  122 (124)
T ss_pred             cccChhhcCCCCEEEECCcchh--HHHHHHHHHHHcC-CCCEEEEEe
Confidence            32 2222358999999765443  3589999999999 999998754

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.49  E-value=8.5e-13  Score=109.66  Aligned_cols=129  Identities=20%  Similarity=0.273  Sum_probs=94.1

Q ss_pred             hHHHHHHHHHhhhCC---CC---cHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC
Q 024647            3 ELFIKQAKQYAETRP---NY---PEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL   74 (265)
Q Consensus         3 ~~f~~~a~~Y~~~rp---~y---~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~   74 (265)
                      +.|+..|+.|...--   .+   .+..++++....  .++.+|||+|||+|.++..+++.+.+++++|+++.+++.+++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~   89 (233)
T PRK05134         10 AKFSALAARWWDPNGEFKPLHRINPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLH   89 (233)
T ss_pred             HHHHHHHHHHhccCCCcHHHHHhhHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHH
Confidence            457777776653111   11   112234554443  3567899999999999999999888999999999999988742


Q ss_pred             -----CCceEEecCCccchhhhhhcc-CCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           75 -----PNIRYELTSPAMSIAELEQNV-AAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        75 -----~~~~~~~~~~~~~~~d~~~~~-~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                           .++.+..       .++.+.+ ...++||+|++...+++. ++..+++.+.++|+ |||.+++..+.
T Consensus        90 ~~~~~~~~~~~~-------~~~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~-~gG~l~v~~~~  153 (233)
T PRK05134         90 ALESGLKIDYRQ-------TTAEELAAEHPGQFDVVTCMEMLEHVPDPASFVRACAKLVK-PGGLVFFSTLN  153 (233)
T ss_pred             HHHcCCceEEEe-------cCHHHhhhhcCCCccEEEEhhHhhccCCHHHHHHHHHHHcC-CCcEEEEEecC
Confidence                 2344444       4444443 245789999999999888 88899999999999 99999886654

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.48  E-value=3.6e-13  Score=119.41  Aligned_cols=97  Identities=18%  Similarity=0.241  Sum_probs=78.8

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhc-CCcEEEEcCCHHHHHHHHcCC---CceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647           32 TNHELAWDVGTGSGQAAASLSGI-FENVIGTETSPKQIEFATKLP---NIRYELTSPAMSIAELEQNVAAQSTVDLVTIA  107 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~  107 (265)
                      +++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.+++..   ++++..       .|...+   +++||+|++.
T Consensus       166 ~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~-------~D~~~l---~~~fD~Ivs~  235 (383)
T PRK11705        166 KPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRL-------QDYRDL---NGQFDRIVSV  235 (383)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEE-------Cchhhc---CCCCCEEEEe
Confidence            46789999999999999999986 468999999999999998631   234444       455443   4689999999


Q ss_pred             cccccCC---hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          108 QAMHWFD---LPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       108 ~~~~~~~---~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      .+++++.   ...+++++.++|| |||.+++..+.
T Consensus       236 ~~~ehvg~~~~~~~l~~i~r~Lk-pGG~lvl~~i~  269 (383)
T PRK11705        236 GMFEHVGPKNYRTYFEVVRRCLK-PDGLFLLHTIG  269 (383)
T ss_pred             CchhhCChHHHHHHHHHHHHHcC-CCcEEEEEEcc
Confidence            9999883   3689999999999 99999987664

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.48  E-value=3.7e-13  Score=111.10  Aligned_cols=98  Identities=26%  Similarity=0.352  Sum_probs=81.4

Q ss_pred             CCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC-----C-CceEEecCCccchhhhhhccCC-CCceeEEEe
Q 024647           34 HELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL-----P-NIRYELTSPAMSIAELEQNVAA-QSTVDLVTI  106 (265)
Q Consensus        34 ~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~-~~~~~~~~~~~~~~d~~~~~~~-~~~~Dlv~~  106 (265)
                      +.+|||+|||+|.++..+++.+.+++++|+++.+++.+++.     . ++.+..       +++.+++.. .++||+|++
T Consensus        46 ~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~-------~d~~~~~~~~~~~~D~i~~  118 (224)
T TIGR01983        46 GLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRC-------TSVEDLAEKGAKSFDVVTC  118 (224)
T ss_pred             CCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEe-------CCHHHhhcCCCCCccEEEe
Confidence            67899999999999999998888999999999999988752     1 355555       555555433 378999999


Q ss_pred             ccccccC-ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          107 AQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       107 ~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      ...+|+. ++..+++++.++|+ |||.+++....
T Consensus       119 ~~~l~~~~~~~~~l~~~~~~L~-~gG~l~i~~~~  151 (224)
T TIGR01983       119 MEVLEHVPDPQAFIRACAQLLK-PGGILFFSTIN  151 (224)
T ss_pred             hhHHHhCCCHHHHHHHHHHhcC-CCcEEEEEecC
Confidence            9999998 88999999999999 99998876654

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.48  E-value=2.8e-13  Score=107.86  Aligned_cols=107  Identities=21%  Similarity=0.291  Sum_probs=79.8

Q ss_pred             HHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC---C--CceEEecCCccchhhhhhcc
Q 024647           21 EELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL---P--NIRYELTSPAMSIAELEQNV   95 (265)
Q Consensus        21 ~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---~--~~~~~~~~~~~~~~d~~~~~   95 (265)
                      +++.+.+ .. .++.++||+|||.|..+..|++++.+|+++|.|+..++.+++.   .  .++...       .|+++..
T Consensus        20 s~v~~a~-~~-~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~-------~Dl~~~~   90 (192)
T PF03848_consen   20 SEVLEAV-PL-LKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRV-------ADLNDFD   90 (192)
T ss_dssp             HHHHHHC-TT-S-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE--------BGCCBS
T ss_pred             HHHHHHH-hh-cCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEE-------ecchhcc
Confidence            4455443 23 3457899999999999999999999999999999999876642   2  355555       6777776


Q ss_pred             CCCCceeEEEeccccccCChh---HHHHHHHHHhcCCCcEEEEEec
Q 024647           96 AAQSTVDLVTIAQAMHWFDLP---QFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        96 ~~~~~~Dlv~~~~~~~~~~~~---~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      ++ +.||+|++..++++++++   .+++.+...++ |||.+++.+.
T Consensus        91 ~~-~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~-pGG~~li~~~  134 (192)
T PF03848_consen   91 FP-EEYDFIVSTVVFMFLQRELRPQIIENMKAATK-PGGYNLIVTF  134 (192)
T ss_dssp             -T-TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEE-EEEEEEEEEE
T ss_pred             cc-CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcC-CcEEEEEEEe
Confidence            54 689999998888888654   58999999999 9999887544

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.47  E-value=1.7e-13  Score=108.72  Aligned_cols=125  Identities=23%  Similarity=0.281  Sum_probs=90.5

Q ss_pred             HHHHHHhhh-CC-CCcHHHHHHHHhh--CC--CCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC-CCceE
Q 024647            7 KQAKQYAET-RP-NYPEELFKFITSK--TT--NHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL-PNIRY   79 (265)
Q Consensus         7 ~~a~~Y~~~-rp-~y~~~l~~~l~~~--~~--~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-~~~~~   79 (265)
                      ..|..|.+. |- .+..++.++....  ++  ++.-|||||||+|..+..|.+.+...+|+|+|+.|++.|.+. -.-.+
T Consensus        18 ~eA~kYt~nsri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~egdl   97 (270)
T KOG1541|consen   18 TEAPKYTQNSRIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELEGDL   97 (270)
T ss_pred             hhhhhccccceeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhhcCe
Confidence            455666662 22 2233343333322  23  467899999999999999999998899999999999998741 11223


Q ss_pred             EecCCccchhhh-hhccCCCCceeEEEeccccccC-Ch-----------hHHHHHHHHHhcCCCcEEEEEecC
Q 024647           80 ELTSPAMSIAEL-EQNVAAQSTVDLVTIAQAMHWF-DL-----------PQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        80 ~~~~~~~~~~d~-~~~~~~~~~~Dlv~~~~~~~~~-~~-----------~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      ..       .|+ +-+|+.+++||-+|+..+++|+ +.           ..|+..++.+|+ +|+..++..+-
T Consensus        98 il-------~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~-rg~raV~QfYp  162 (270)
T KOG1541|consen   98 IL-------CDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLK-RGARAVLQFYP  162 (270)
T ss_pred             ee-------eecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhc-cCceeEEEecc
Confidence            33       333 5578999999999999999998 42           147888999999 89999886663

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.47  E-value=2.8e-13  Score=111.58  Aligned_cols=93  Identities=15%  Similarity=0.228  Sum_probs=74.9

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCCCCceeEE
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAAQSTVDLV  104 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv  104 (265)
                      .++.+|||+|||+|.++..+++...+|+|+|+|+.|++.|++.       .++.+..       +|++..+   ++||+|
T Consensus        54 ~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~-------~d~~~~~---~~fD~i  123 (219)
T TIGR02021        54 LKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEV-------NDLLSLC---GEFDIV  123 (219)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEE-------CChhhCC---CCcCEE
Confidence            3568899999999999999999888999999999999988752       2566666       5666553   689999


Q ss_pred             EeccccccCC---hhHHHHHHHHHhcCCCcEEEE
Q 024647          105 TIAQAMHWFD---LPQFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus       105 ~~~~~~~~~~---~~~~l~~~~~~Lk~pgG~l~~  135 (265)
                      ++...++++.   ...+++++.++++ +++.+.+
T Consensus       124 i~~~~l~~~~~~~~~~~l~~i~~~~~-~~~~i~~  156 (219)
T TIGR02021       124 VCMDVLIHYPASDMAKALGHLASLTK-ERVIFTF  156 (219)
T ss_pred             EEhhHHHhCCHHHHHHHHHHHHHHhC-CCEEEEE
Confidence            9999887763   4578999999988 7765554

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.46  E-value=5.5e-13  Score=106.39  Aligned_cols=99  Identities=14%  Similarity=0.266  Sum_probs=77.0

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC-----CCceEEecCCccchhhhhhccCCCCceeEEEe
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL-----PNIRYELTSPAMSIAELEQNVAAQSTVDLVTI  106 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~  106 (265)
                      .++.+|||+|||+|.++..+++.+.+|+++|+|+.|++.+++.     .++.+..       +|+...  ..++||+|++
T Consensus        18 ~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-------~d~~~~--~~~~fD~Vi~   88 (179)
T TIGR00537        18 LKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVM-------TDLFKG--VRGKFDVILF   88 (179)
T ss_pred             cCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEE-------cccccc--cCCcccEEEE
Confidence            3457899999999999999999888999999999999988752     2344444       454433  2458999999


Q ss_pred             ccccccCC----------------------hhHHHHHHHHHhcCCCcEEEEEecCC
Q 024647          107 AQAMHWFD----------------------LPQFYNQVKWVLKKPNGVIATWCYTV  140 (265)
Q Consensus       107 ~~~~~~~~----------------------~~~~l~~~~~~Lk~pgG~l~~~~~~~  140 (265)
                      +..+|..+                      ...+++++.++|+ |||.+++.....
T Consensus        89 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-~gG~~~~~~~~~  143 (179)
T TIGR00537        89 NPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILK-EGGRVQLIQSSL  143 (179)
T ss_pred             CCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhC-CCCEEEEEEecc
Confidence            98776442                      2457999999999 999998866543

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.46  E-value=8.3e-13  Score=108.26  Aligned_cols=114  Identities=16%  Similarity=0.034  Sum_probs=81.6

Q ss_pred             HHHHHHHHhh-CCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCce-----------EEecCCccch
Q 024647           21 EELFKFITSK-TTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIR-----------YELTSPAMSI   88 (265)
Q Consensus        21 ~~l~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~-----------~~~~~~~~~~   88 (265)
                      +-+.+++... .+++.+|||+|||.|..+..|++++.+|+|||+|+..++.+....++.           +....+.+..
T Consensus        24 ~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~  103 (218)
T PRK13255         24 PLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYC  103 (218)
T ss_pred             HHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEE
Confidence            4455554332 245679999999999999999999999999999999999763211111           1112233333


Q ss_pred             hhhhhccCC-CCceeEEEeccccccCC---hhHHHHHHHHHhcCCCcEEEE
Q 024647           89 AELEQNVAA-QSTVDLVTIAQAMHWFD---LPQFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus        89 ~d~~~~~~~-~~~~Dlv~~~~~~~~~~---~~~~l~~~~~~Lk~pgG~l~~  135 (265)
                      +|+.++... .+.||+|+...++|.++   ...+++.+.++|+ |||++++
T Consensus       104 ~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~-pgG~~~l  153 (218)
T PRK13255        104 GDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLP-AGCRGLL  153 (218)
T ss_pred             CcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcC-CCCeEEE
Confidence            666665422 25799999988888885   3479999999999 9997554

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.45  E-value=6.7e-13  Score=108.13  Aligned_cols=104  Identities=16%  Similarity=0.169  Sum_probs=77.4

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC-------CCceEEecCCccch
Q 024647           21 EELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSI   88 (265)
Q Consensus        21 ~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~   88 (265)
                      +.+..++....  .++.+|||+|||+|..+..+++..   .+|+++|+++.|++.+++.       .++.+..       
T Consensus        58 p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~-------  130 (205)
T PRK13944         58 PHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYH-------  130 (205)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE-------
Confidence            34455555543  456899999999999999998764   5799999999999988741       1355666       


Q ss_pred             hhhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647           89 AELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        89 ~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      +|+.+.....++||+|++..+++++.     +++.+.|+ |||.+++..
T Consensus       131 ~d~~~~~~~~~~fD~Ii~~~~~~~~~-----~~l~~~L~-~gG~lvi~~  173 (205)
T PRK13944        131 GDGKRGLEKHAPFDAIIVTAAASTIP-----SALVRQLK-DGGVLVIPV  173 (205)
T ss_pred             CCcccCCccCCCccEEEEccCcchhh-----HHHHHhcC-cCcEEEEEE
Confidence            55554433457899999998776543     57889999 999998743

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.45  E-value=3.3e-13  Score=117.68  Aligned_cols=108  Identities=14%  Similarity=0.111  Sum_probs=80.8

Q ss_pred             CCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC---CC--ceEEecCCccchhhhhhccCCCCceeEEEe
Q 024647           34 HELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL---PN--IRYELTSPAMSIAELEQNVAAQSTVDLVTI  106 (265)
Q Consensus        34 ~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~---~~--~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~  106 (265)
                      ..+|||+|||+|.++..++++++  +|+++|+|+.|++.++..   .+  ..+..       .|....  ..++||+|++
T Consensus       197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~-------~D~~~~--~~~~fDlIvs  267 (342)
T PRK09489        197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFA-------SNVFSD--IKGRFDMIIS  267 (342)
T ss_pred             CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEE-------cccccc--cCCCccEEEE
Confidence            45799999999999999999875  799999999999998751   12  22333       343222  3568999999


Q ss_pred             ccccccC-C-----hhHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHhh
Q 024647          107 AQAMHWF-D-----LPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVF  151 (265)
Q Consensus       107 ~~~~~~~-~-----~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~  151 (265)
                      +..+|+. +     ...++.++.+.|+ |||.+++...........+++.|
T Consensus       268 NPPFH~g~~~~~~~~~~~i~~a~~~Lk-pgG~L~iVan~~l~y~~~l~~~F  317 (342)
T PRK09489        268 NPPFHDGIQTSLDAAQTLIRGAVRHLN-SGGELRIVANAFLPYPDLLDETF  317 (342)
T ss_pred             CCCccCCccccHHHHHHHHHHHHHhcC-cCCEEEEEEeCCCChHHHHHHHc
Confidence            9999974 2     3679999999999 99999887665443334444444

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.45  E-value=1.6e-12  Score=113.84  Aligned_cols=101  Identities=21%  Similarity=0.248  Sum_probs=81.6

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhc--cCCCCcee
Q 024647           33 NHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQN--VAAQSTVD  102 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D  102 (265)
                      .+..+||||||+|.++..+++..+  .++|+|+++.|++.+.+      ..|+.++++       |+..+  .++++++|
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~-------DA~~ll~~~~~~s~D  194 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINY-------DARLLLELLPSNSVE  194 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEEC-------CHHHhhhhCCCCcee
Confidence            346899999999999999999875  69999999999987754      357888874       44332  35788999


Q ss_pred             EEEeccccccC-Ch------hHHHHHHHHHhcCCCcEEEEEecCCC
Q 024647          103 LVTIAQAMHWF-DL------PQFYNQVKWVLKKPNGVIATWCYTVP  141 (265)
Q Consensus       103 lv~~~~~~~~~-~~------~~~l~~~~~~Lk~pgG~l~~~~~~~~  141 (265)
                      .|++++...|. .+      ..++.++.|+|+ |||.+.+.+-...
T Consensus       195 ~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLk-pGG~l~l~TD~~~  239 (390)
T PRK14121        195 KIFVHFPVPWDKKPHRRVISEDFLNEALRVLK-PGGTLELRTDSEL  239 (390)
T ss_pred             EEEEeCCCCccccchhhccHHHHHHHHHHHcC-CCcEEEEEEECHH
Confidence            99999888887 33      479999999999 9999998665433

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.45  E-value=1.9e-13  Score=114.55  Aligned_cols=107  Identities=16%  Similarity=0.092  Sum_probs=82.9

Q ss_pred             HHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCc-EEEEcCCHHHHHHHH---cC--CCceEEecCCccchhhhhhccC
Q 024647           25 KFITSKT--TNHELAWDVGTGSGQAAASLSGIFEN-VIGTETSPKQIEFAT---KL--PNIRYELTSPAMSIAELEQNVA   96 (265)
Q Consensus        25 ~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~-v~~vD~s~~~~~~a~---~~--~~~~~~~~~~~~~~~d~~~~~~   96 (265)
                      +++..+.  -.+++|||||||.|..+..++.++++ |+|+|+++....+.+   +.  ........+     -.+++++.
T Consensus       105 ~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lp-----lgvE~Lp~  179 (315)
T PF08003_consen  105 DRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELP-----LGVEDLPN  179 (315)
T ss_pred             HHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcC-----cchhhccc
Confidence            3455444  25789999999999999999999985 999999998877643   21  122222221     24577765


Q ss_pred             CCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647           97 AQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        97 ~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                       .+.||+|+|..++.+. +|-..+.++.+.|+ |||.+++.+.
T Consensus       180 -~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~-~gGeLvLETl  220 (315)
T PF08003_consen  180 -LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLR-PGGELVLETL  220 (315)
T ss_pred             -cCCcCEEEEeeehhccCCHHHHHHHHHHhhC-CCCEEEEEEe
Confidence             6899999999998777 99999999999999 9999998555

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK04266 fibrillarin; Provisional

Probab=99.44  E-value=8e-13  Score=108.82  Aligned_cols=98  Identities=17%  Similarity=0.156  Sum_probs=70.3

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHH----HcCCCceEEecCCccchhhh-hhccCCCCceeEE
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFA----TKLPNIRYELTSPAMSIAEL-EQNVAAQSTVDLV  104 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a----~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~Dlv  104 (265)
                      .++.+|||+|||+|.++..+++..  .+|+|+|+++.|++.+    ++.+|+.+..+++.    +. ...++ .++||+|
T Consensus        71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~----~~~~~~~l-~~~~D~i  145 (226)
T PRK04266         71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADAR----KPERYAHV-VEKVDVI  145 (226)
T ss_pred             CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCC----Ccchhhhc-cccCCEE
Confidence            467899999999999999999876  4799999999988854    33467777774431    10 01122 2569999


Q ss_pred             EeccccccCChhHHHHHHHHHhcCCCcEEEEE
Q 024647          105 TIAQAMHWFDLPQFYNQVKWVLKKPNGVIATW  136 (265)
Q Consensus       105 ~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~  136 (265)
                      ++.....| ....+++++.++|| |||.+++.
T Consensus       146 ~~d~~~p~-~~~~~L~~~~r~LK-pGG~lvI~  175 (226)
T PRK04266        146 YQDVAQPN-QAEIAIDNAEFFLK-DGGYLLLA  175 (226)
T ss_pred             EECCCChh-HHHHHHHHHHHhcC-CCcEEEEE
Confidence            96533211 11346899999999 99999984

>PTZ00146 fibrillarin; Provisional

Probab=99.44  E-value=1.4e-12  Score=109.90  Aligned_cols=116  Identities=20%  Similarity=0.191  Sum_probs=84.7

Q ss_pred             HhhhCCCCcHHHHHHHHhhC-----CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHH----HHHHHHcCCCceE
Q 024647           12 YAETRPNYPEELFKFITSKT-----TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPK----QIEFATKLPNIRY   79 (265)
Q Consensus        12 Y~~~rp~y~~~l~~~l~~~~-----~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~----~~~~a~~~~~~~~   79 (265)
                      |..+.| |-.+|...|....     .+.++|||+|||+|.++..+++..   ..|++||+++.    |++.++.++|+.+
T Consensus       107 yR~w~p-~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~  185 (293)
T PTZ00146        107 YRVWNP-FRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVP  185 (293)
T ss_pred             eeeeCC-cccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEE
Confidence            767777 4677877775432     467899999999999999999986   36999999986    4556655678888


Q ss_pred             EecCCccchhhhhhccCCCCceeEEEeccccccCCh-hHHHHHHHHHhcCCCcEEEE
Q 024647           80 ELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDL-PQFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus        80 ~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~-~~~l~~~~~~Lk~pgG~l~~  135 (265)
                      +..+++    +...+....+++|+|++..+.  .|. ..++.++.++|| |||.|++
T Consensus       186 I~~Da~----~p~~y~~~~~~vDvV~~Dva~--pdq~~il~~na~r~LK-pGG~~vI  235 (293)
T PTZ00146        186 IIEDAR----YPQKYRMLVPMVDVIFADVAQ--PDQARIVALNAQYFLK-NGGHFII  235 (293)
T ss_pred             EECCcc----ChhhhhcccCCCCEEEEeCCC--cchHHHHHHHHHHhcc-CCCEEEE
Confidence            875432    111122234589999998752  333 356678999999 9999998

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.44  E-value=1.3e-12  Score=114.84  Aligned_cols=107  Identities=13%  Similarity=0.117  Sum_probs=78.7

Q ss_pred             CCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC---------CCceEEecCCccchhhhhhccCCCCcee
Q 024647           34 HELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL---------PNIRYELTSPAMSIAELEQNVAAQSTVD  102 (265)
Q Consensus        34 ~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~---------~~~~~~~~~~~~~~~d~~~~~~~~~~~D  102 (265)
                      ..+|||+|||+|.++..++++++  +|+++|+|+.+++.+++.         .++++..       .|.... .+.++||
T Consensus       229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~-------~D~l~~-~~~~~fD  300 (378)
T PRK15001        229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMI-------NNALSG-VEPFRFN  300 (378)
T ss_pred             CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEE-------cccccc-CCCCCEE
Confidence            35899999999999999998864  799999999999998752         1234444       443222 2446899


Q ss_pred             EEEeccccccCC------hhHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHH
Q 024647          103 LVTIAQAMHWFD------LPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDA  149 (265)
Q Consensus       103 lv~~~~~~~~~~------~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~  149 (265)
                      +|+|+..+|...      ..++++++.++|+ |||.|++...........+.+
T Consensus       301 lIlsNPPfh~~~~~~~~ia~~l~~~a~~~Lk-pGG~L~iV~nr~l~y~~~L~~  352 (378)
T PRK15001        301 AVLCNPPFHQQHALTDNVAWEMFHHARRCLK-INGELYIVANRHLDYFHKLKK  352 (378)
T ss_pred             EEEECcCcccCccCCHHHHHHHHHHHHHhcc-cCCEEEEEEecCcCHHHHHHH
Confidence            999999888652      2468899999999 999999876543332333344

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.44  E-value=1e-12  Score=107.50  Aligned_cols=104  Identities=19%  Similarity=0.188  Sum_probs=78.1

Q ss_pred             cHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC------CCceEEecCCccch
Q 024647           20 PEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL------PNIRYELTSPAMSI   88 (265)
Q Consensus        20 ~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~   88 (265)
                      .+.+...+....  .++.+|||+|||+|..+..+++..   .+|+++|+++.+++.+++.      .++.+..       
T Consensus        61 ~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~-------  133 (212)
T PRK13942         61 AIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIV-------  133 (212)
T ss_pred             cHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEE-------
Confidence            345555555443  467899999999999999998764   4799999999999988752      3566666       


Q ss_pred             hhhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEE
Q 024647           89 AELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATW  136 (265)
Q Consensus        89 ~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~  136 (265)
                      +|+.....+.++||+|++..+++.+     .+.+.+.|+ |||.+++.
T Consensus       134 gd~~~~~~~~~~fD~I~~~~~~~~~-----~~~l~~~Lk-pgG~lvi~  175 (212)
T PRK13942        134 GDGTLGYEENAPYDRIYVTAAGPDI-----PKPLIEQLK-DGGIMVIP  175 (212)
T ss_pred             CCcccCCCcCCCcCEEEECCCcccc-----hHHHHHhhC-CCcEEEEE
Confidence            5555444456789999998765543     346778899 99999874

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.43  E-value=1.3e-12  Score=107.20  Aligned_cols=103  Identities=22%  Similarity=0.229  Sum_probs=76.6

Q ss_pred             HHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCc---EEEEcCCHHHHHHHHc------CCCceEEecCCccchhh
Q 024647           22 ELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFEN---VIGTETSPKQIEFATK------LPNIRYELTSPAMSIAE   90 (265)
Q Consensus        22 ~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d   90 (265)
                      .+...+....  .++.+|||+|||+|..+..+++....   |+++|+++.+++.|++      ..++.+..       +|
T Consensus        64 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~-------~d  136 (215)
T TIGR00080        64 HMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIV-------GD  136 (215)
T ss_pred             HHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEE-------CC
Confidence            3444554443  46789999999999999999988654   9999999999998875      24677776       45


Q ss_pred             hhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647           91 LEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        91 ~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      +.......++||+|++..+.+.     ..+.+.+.|+ |||++++..
T Consensus       137 ~~~~~~~~~~fD~Ii~~~~~~~-----~~~~~~~~L~-~gG~lv~~~  177 (215)
T TIGR00080       137 GTQGWEPLAPYDRIYVTAAGPK-----IPEALIDQLK-EGGILVMPV  177 (215)
T ss_pred             cccCCcccCCCCEEEEcCCccc-----ccHHHHHhcC-cCcEEEEEE
Confidence            4443334468999998765443     4456889999 999998743

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.42  E-value=1.1e-12  Score=103.34  Aligned_cols=104  Identities=14%  Similarity=0.127  Sum_probs=81.1

Q ss_pred             HHHhhCCCCCeEEEEcCCcchhHHHHHh-cCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEE
Q 024647           26 FITSKTTNHELAWDVGTGSGQAAASLSG-IFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLV  104 (265)
Q Consensus        26 ~l~~~~~~~~~vlDvGcG~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv  104 (265)
                      .|.+..+++.+|||+|||.|.+...|.+ +..+..|+|++++.+..+.+ .++..++.+++   .++.  .+++++||.|
T Consensus         6 ~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~-rGv~Viq~Dld---~gL~--~f~d~sFD~V   79 (193)
T PF07021_consen    6 IIAEWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA-RGVSVIQGDLD---EGLA--DFPDQSFDYV   79 (193)
T ss_pred             HHHHHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH-cCCCEEECCHH---HhHh--hCCCCCccEE
Confidence            4445557889999999999999999987 45689999999999988876 47788885542   1222  2689999999


Q ss_pred             EeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          105 TIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       105 ~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +.++++..+ +|..+++++.|+-|    ..++..++
T Consensus        80 IlsqtLQ~~~~P~~vL~EmlRVgr----~~IVsFPN  111 (193)
T PF07021_consen   80 ILSQTLQAVRRPDEVLEEMLRVGR----RAIVSFPN  111 (193)
T ss_pred             ehHhHHHhHhHHHHHHHHHHHhcC----eEEEEecC
Confidence            999999988 89999999977644    44554444

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.41  E-value=6.1e-13  Score=113.87  Aligned_cols=104  Identities=19%  Similarity=0.295  Sum_probs=77.2

Q ss_pred             HHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC---CC----ceEEecCCccchhhhhhcc
Q 024647           24 FKFITSKTTNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL---PN----IRYELTSPAMSIAELEQNV   95 (265)
Q Consensus        24 ~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~---~~----~~~~~~~~~~~~~d~~~~~   95 (265)
                      ++++.....++.+|||+|||+|.++..+++.++ +|+|+|+|+.+++.+++.   .+    +....       ++.  ..
T Consensus       150 l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~-------~~~--~~  220 (288)
T TIGR00406       150 LEWLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKL-------IYL--EQ  220 (288)
T ss_pred             HHHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEe-------ccc--cc
Confidence            444555556778999999999999999988765 799999999999998752   11    22222       221  12


Q ss_pred             CCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           96 AAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        96 ~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      ...++||+|+++...+.  ...++.++.++|+ |||.+++....
T Consensus       221 ~~~~~fDlVvan~~~~~--l~~ll~~~~~~Lk-pgG~li~sgi~  261 (288)
T TIGR00406       221 PIEGKADVIVANILAEV--IKELYPQFSRLVK-PGGWLILSGIL  261 (288)
T ss_pred             ccCCCceEEEEecCHHH--HHHHHHHHHHHcC-CCcEEEEEeCc
Confidence            34568999999865432  3578999999999 99999987764

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.41  E-value=1.3e-12  Score=96.72  Aligned_cols=96  Identities=20%  Similarity=0.267  Sum_probs=75.8

Q ss_pred             CeEEEEcCCcchhHHHHHhcC-CcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhcc--CCCCceeEE
Q 024647           35 ELAWDVGTGSGQAAASLSGIF-ENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNV--AAQSTVDLV  104 (265)
Q Consensus        35 ~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~--~~~~~~Dlv  104 (265)
                      .+|||+|||+|.++..+++.+ .+++|+|+++..++.++..       .++++..       +|+.+..  .++++||+|
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~-------~D~~~~~~~~~~~~~D~I   74 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIV-------GDARDLPEPLPDGKFDLI   74 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEE-------SHHHHHHHTCTTT-EEEE
T ss_pred             CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEE-------CchhhchhhccCceeEEE
Confidence            579999999999999999998 7899999999999988751       3466666       6666654  677899999


Q ss_pred             EeccccccC--C-------hhHHHHHHHHHhcCCCcEEEEEec
Q 024647          105 TIAQAMHWF--D-------LPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       105 ~~~~~~~~~--~-------~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      +++-.++..  +       ...+++++.++|+ |||.++++.+
T Consensus        75 v~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~-~gG~~~~~~~  116 (117)
T PF13659_consen   75 VTNPPYGPRSGDKAALRRLYSRFLEAAARLLK-PGGVLVFITP  116 (117)
T ss_dssp             EE--STTSBTT----GGCHHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred             EECCCCccccccchhhHHHHHHHHHHHHHHcC-CCeEEEEEeC
Confidence            998866532  1       2468999999999 9999998764

...

>PRK14967 putative methyltransferase; Provisional

Probab=99.41  E-value=1.8e-12  Score=107.02  Aligned_cols=116  Identities=16%  Similarity=0.159  Sum_probs=80.8

Q ss_pred             hCCCCcHHHH-HHHHhh-CCCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC-----CCceEEecCCcc
Q 024647           15 TRPNYPEELF-KFITSK-TTNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL-----PNIRYELTSPAM   86 (265)
Q Consensus        15 ~rp~y~~~l~-~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~   86 (265)
                      ++|.....++ +.+... ..++.+|||+|||+|.++..+++.+. +++++|+|+.+++.+++.     .++.+..     
T Consensus        16 ~~p~~ds~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~-----   90 (223)
T PRK14967         16 YRPQEDTQLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRR-----   90 (223)
T ss_pred             cCCCCcHHHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEE-----
Confidence            4555443443 333322 34567999999999999999988765 899999999999987652     1344444     


Q ss_pred             chhhhhhccCCCCceeEEEeccccccC-C---------------------hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           87 SIAELEQNVAAQSTVDLVTIAQAMHWF-D---------------------LPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        87 ~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~---------------------~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                        +|+... +++++||+|+++...+.. +                     ...+++++.++|+ |||.+++....
T Consensus        91 --~d~~~~-~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk-~gG~l~~~~~~  161 (223)
T PRK14967         91 --GDWARA-VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLA-PGGSLLLVQSE  161 (223)
T ss_pred             --Cchhhh-ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcC-CCcEEEEEEec
Confidence              555443 356789999998643321 1                     2457888999999 99999875544

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.40  E-value=2.1e-12  Score=103.88  Aligned_cols=104  Identities=20%  Similarity=0.244  Sum_probs=72.3

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCC---cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhc--cCCCCceeEEEe
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFE---NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQN--VAAQSTVDLVTI  106 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~Dlv~~  106 (265)
                      +++.+|||+|||+|.++..+++...   +|+++|+|+.+     ..+++.+.+.+..-. ...+.+  ..++++||+|++
T Consensus        31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----~~~~i~~~~~d~~~~-~~~~~l~~~~~~~~~D~V~~  104 (188)
T TIGR00438        31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----PIENVDFIRGDFTDE-EVLNKIRERVGDDKVDVVMS  104 (188)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----cCCCceEEEeeCCCh-hHHHHHHHHhCCCCccEEEc
Confidence            5778999999999999999987753   59999999975     235677776433100 000000  135668999998


Q ss_pred             ccccc----cC-Ch-------hHHHHHHHHHhcCCCcEEEEEecCCCC
Q 024647          107 AQAMH----WF-DL-------PQFYNQVKWVLKKPNGVIATWCYTVPE  142 (265)
Q Consensus       107 ~~~~~----~~-~~-------~~~l~~~~~~Lk~pgG~l~~~~~~~~~  142 (265)
                      +.+.|    |. +.       ..++.++.++|+ |||.+++..+....
T Consensus       105 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~lvi~~~~~~~  151 (188)
T TIGR00438       105 DAAPNISGYWDIDHLRSIDLVELALDIAKEVLK-PKGNFVVKVFQGEE  151 (188)
T ss_pred             CCCCCCCCCccccHHHHHHHHHHHHHHHHHHcc-CCCEEEEEEccCcc
Confidence            65432    32 32       578999999999 99999986654333

>PLN03075 nicotianamine synthase; Provisional

Probab=99.39  E-value=3.9e-12  Score=107.67  Aligned_cols=96  Identities=13%  Similarity=0.143  Sum_probs=73.9

Q ss_pred             CCCeEEEEcCCcchhHHHHH--hcCC--cEEEEcCCHHHHHHHHcC--------CCceEEecCCccchhhhhhccCCCCc
Q 024647           33 NHELAWDVGTGSGQAAASLS--GIFE--NVIGTETSPKQIEFATKL--------PNIRYELTSPAMSIAELEQNVAAQST  100 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~--~~~~--~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~d~~~~~~~~~~  100 (265)
                      ++.+|+|||||+|.++..+.  .+++  +++++|+++.+++.|++.        .++.|..       +|+.+.....+.
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~-------~Da~~~~~~l~~  195 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHT-------ADVMDVTESLKE  195 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEE-------CchhhcccccCC
Confidence            66889999999885554433  4454  599999999999988862        3477777       444444323468


Q ss_pred             eeEEEeccccccC---ChhHHHHHHHHHhcCCCcEEEEEe
Q 024647          101 VDLVTIAQAMHWF---DLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       101 ~Dlv~~~~~~~~~---~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      ||+|++. ++|.+   ++.++++++.+.|+ |||.+++-.
T Consensus       196 FDlVF~~-ALi~~dk~~k~~vL~~l~~~Lk-PGG~Lvlr~  233 (296)
T PLN03075        196 YDVVFLA-ALVGMDKEEKVKVIEHLGKHMA-PGALLMLRS  233 (296)
T ss_pred             cCEEEEe-cccccccccHHHHHHHHHHhcC-CCcEEEEec
Confidence            9999999 76665   67789999999999 999999854

>TIGR03438 probable methyltransferase

Probab=99.39  E-value=3.9e-12  Score=109.60  Aligned_cols=100  Identities=14%  Similarity=0.141  Sum_probs=72.9

Q ss_pred             hhCCCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC-----CCc--eEEecCCccchhhhhh-ccCC
Q 024647           29 SKTTNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL-----PNI--RYELTSPAMSIAELEQ-NVAA   97 (265)
Q Consensus        29 ~~~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-----~~~--~~~~~~~~~~~~d~~~-~~~~   97 (265)
                      ...+++.+|||+|||+|..+..|++.+   .+|+++|+|+.|++.+++.     +++  .+++       +|+.+ ++++
T Consensus        59 ~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~-------gD~~~~~~~~  131 (301)
T TIGR03438        59 AATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGIC-------ADFTQPLALP  131 (301)
T ss_pred             HhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEE-------Ecccchhhhh
Confidence            334566789999999999999999885   5799999999999887642     343  3345       55443 2222


Q ss_pred             CC----ceeEEEeccccccCChh---HHHHHHHHHhcCCCcEEEEE
Q 024647           98 QS----TVDLVTIAQAMHWFDLP---QFYNQVKWVLKKPNGVIATW  136 (265)
Q Consensus        98 ~~----~~Dlv~~~~~~~~~~~~---~~l~~~~~~Lk~pgG~l~~~  136 (265)
                      ..    ...++++..+++++++.   .+++++.++|+ |||.+++-
T Consensus       132 ~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~-pgG~~lig  176 (301)
T TIGR03438       132 PEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLG-PGGGLLIG  176 (301)
T ss_pred             cccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcC-CCCEEEEe
Confidence            21    34455566688888543   58999999999 99999873

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.38  E-value=5e-12  Score=103.58  Aligned_cols=106  Identities=18%  Similarity=0.123  Sum_probs=78.6

Q ss_pred             cHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC------CCceEEecCCccchhhh
Q 024647           20 PEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAEL   91 (265)
Q Consensus        20 ~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d~   91 (265)
                      .+.+..++....  .++.+|||+|||+|..+..+++...+++++|+++.+++.+++.      .++.+..       +|.
T Consensus        63 ~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~-------~d~  135 (212)
T PRK00312         63 QPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRH-------GDG  135 (212)
T ss_pred             cHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEE-------CCc
Confidence            345555555443  4668999999999999998888878999999999999988752      3566666       444


Q ss_pred             hhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647           92 EQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        92 ~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      .....+.++||+|++..+++++     .+.+.+.|+ |||.+++...
T Consensus       136 ~~~~~~~~~fD~I~~~~~~~~~-----~~~l~~~L~-~gG~lv~~~~  176 (212)
T PRK00312        136 WKGWPAYAPFDRILVTAAAPEI-----PRALLEQLK-EGGILVAPVG  176 (212)
T ss_pred             ccCCCcCCCcCEEEEccCchhh-----hHHHHHhcC-CCcEEEEEEc
Confidence            3322234789999998776654     456789999 9999987554

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.38  E-value=8e-12  Score=100.34  Aligned_cols=95  Identities=19%  Similarity=0.205  Sum_probs=73.3

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC------CCceEEecCCccchhhhhhccCCCCceeE
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAELEQNVAAQSTVDL  103 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dl  103 (265)
                      .++.+|||+|||+|.++..+++.++  +|+++|+|+.+++.+++.      .++.+..       +|+.. +. .++||+
T Consensus        30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~-------~d~~~-~~-~~~~D~  100 (187)
T PRK08287         30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIP-------GEAPI-EL-PGKADA  100 (187)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEe-------cCchh-hc-CcCCCE
Confidence            4668999999999999999998764  799999999999988751      3455555       44321 22 357999


Q ss_pred             EEeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          104 VTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       104 v~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      |++....+  ....++..+.+.|+ |||.+++...
T Consensus       101 v~~~~~~~--~~~~~l~~~~~~Lk-~gG~lv~~~~  132 (187)
T PRK08287        101 IFIGGSGG--NLTAIIDWSLAHLH-PGGRLVLTFI  132 (187)
T ss_pred             EEECCCcc--CHHHHHHHHHHhcC-CCeEEEEEEe
Confidence            99876543  34678999999999 9999987543

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.38  E-value=5.3e-12  Score=108.75  Aligned_cols=92  Identities=18%  Similarity=0.191  Sum_probs=67.7

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCC-----------CceEEecCCccchhhhhhccCCCCce
Q 024647           33 NHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLP-----------NIRYELTSPAMSIAELEQNVAAQSTV  101 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-----------~~~~~~~~~~~~~~d~~~~~~~~~~~  101 (265)
                      ++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.++++.           ++.+..       .|++.+   +++|
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~-------~Dl~~l---~~~f  213 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEA-------NDLESL---SGKY  213 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEE-------cchhhc---CCCc
Confidence            4679999999999999999999889999999999999887531           233444       555443   4789


Q ss_pred             eEEEeccccccC-Ch--hHHHHHHHHHhcCCCcEEEEE
Q 024647          102 DLVTIAQAMHWF-DL--PQFYNQVKWVLKKPNGVIATW  136 (265)
Q Consensus       102 Dlv~~~~~~~~~-~~--~~~l~~~~~~Lk~pgG~l~~~  136 (265)
                      |+|+|..+++++ +.  ..+++.+.+ +. ++|.++.+
T Consensus       214 D~Vv~~~vL~H~p~~~~~~ll~~l~~-l~-~g~liIs~  249 (315)
T PLN02585        214 DTVTCLDVLIHYPQDKADGMIAHLAS-LA-EKRLIISF  249 (315)
T ss_pred             CEEEEcCEEEecCHHHHHHHHHHHHh-hc-CCEEEEEe
Confidence            999999987666 32  235555554 56 66665543

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.37  E-value=1.2e-12  Score=110.40  Aligned_cols=113  Identities=18%  Similarity=0.199  Sum_probs=82.6

Q ss_pred             cHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCc-EEEEcCCHHHHHHHHcC---CCceEEecCCccchhhhhhcc
Q 024647           20 PEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFEN-VIGTETSPKQIEFATKL---PNIRYELTSPAMSIAELEQNV   95 (265)
Q Consensus        20 ~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~-v~~vD~s~~~~~~a~~~---~~~~~~~~~~~~~~~d~~~~~   95 (265)
                      +.-.+++|..+..++.+|||+|||+|.++...++.++. ++|+|++|..++.++..   .++.-.   ......+.... 
T Consensus       149 T~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~---~~~~~~~~~~~-  224 (300)
T COG2264         149 TSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELL---VQAKGFLLLEV-  224 (300)
T ss_pred             HHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchh---hhcccccchhh-
Confidence            44567788888889999999999999999999999985 99999999999999852   233310   00000111111 


Q ss_pred             CCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           96 AAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        96 ~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      ...++||+|++|-..+  -...+..++.+.|+ |||+++++..-
T Consensus       225 ~~~~~~DvIVANILA~--vl~~La~~~~~~lk-pgg~lIlSGIl  265 (300)
T COG2264         225 PENGPFDVIVANILAE--VLVELAPDIKRLLK-PGGRLILSGIL  265 (300)
T ss_pred             cccCcccEEEehhhHH--HHHHHHHHHHHHcC-CCceEEEEeeh
Confidence            2346999999984211  12478999999999 99999998764

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.37  E-value=1.3e-12  Score=109.61  Aligned_cols=105  Identities=16%  Similarity=0.174  Sum_probs=76.1

Q ss_pred             HHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCc-EEEEcCCHHHHHHHHcC---CCceEEecCCccchhhhhhccC
Q 024647           21 EELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFEN-VIGTETSPKQIEFATKL---PNIRYELTSPAMSIAELEQNVA   96 (265)
Q Consensus        21 ~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~-v~~vD~s~~~~~~a~~~---~~~~~~~~~~~~~~~d~~~~~~   96 (265)
                      ..+++.+.....++.+|||+|||+|.++..+++.++. |+|+|+|+.+++.|++.   .++.           +.-.+..
T Consensus       107 ~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~-----------~~~~~~~  175 (250)
T PRK00517        107 RLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVE-----------LNVYLPQ  175 (250)
T ss_pred             HHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC-----------ceEEEcc
Confidence            3455566655567889999999999999998888765 99999999999998752   1221           0001111


Q ss_pred             CCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           97 AQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        97 ~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      .+.+||+|+++...+  ....+++++.++|+ |||.+++....
T Consensus       176 ~~~~fD~Vvani~~~--~~~~l~~~~~~~Lk-pgG~lilsgi~  215 (250)
T PRK00517        176 GDLKADVIVANILAN--PLLELAPDLARLLK-PGGRLILSGIL  215 (250)
T ss_pred             CCCCcCEEEEcCcHH--HHHHHHHHHHHhcC-CCcEEEEEECc
Confidence            222799999875432  23468899999999 99999987654

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.37  E-value=8.7e-12  Score=108.81  Aligned_cols=115  Identities=16%  Similarity=0.087  Sum_probs=87.1

Q ss_pred             cHHHHHHHHhh--CCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC------CCceEEecCCccchhhh
Q 024647           20 PEELFKFITSK--TTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAEL   91 (265)
Q Consensus        20 ~~~l~~~l~~~--~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d~   91 (265)
                      .+.+...+.+.  .+++.+|||.|||+|.++..++..+.+++|+|+++.|++.++..      .++.+..       +|+
T Consensus       167 ~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~-------~D~  239 (329)
T TIGR01177       167 DPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKR-------GDA  239 (329)
T ss_pred             CHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEe-------cch
Confidence            44555555443  35677899999999999999888888999999999999987642      2344444       777


Q ss_pred             hhccCCCCceeEEEecccccc--------C-C-hhHHHHHHHHHhcCCCcEEEEEecCCCC
Q 024647           92 EQNVAAQSTVDLVTIAQAMHW--------F-D-LPQFYNQVKWVLKKPNGVIATWCYTVPE  142 (265)
Q Consensus        92 ~~~~~~~~~~Dlv~~~~~~~~--------~-~-~~~~l~~~~~~Lk~pgG~l~~~~~~~~~  142 (265)
                      .+++.++++||+|+++.....        . + ...+++++.++|+ |||+++++.+....
T Consensus       240 ~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk-~gG~lv~~~~~~~~  299 (329)
T TIGR01177       240 TKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLK-SEGWIVYAVPTRID  299 (329)
T ss_pred             hcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHcc-CCcEEEEEEcCCCC
Confidence            788777789999999753221        1 1 3579999999999 99999998876443

This family is found exclusively in the Archaea.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.35  E-value=6.9e-12  Score=103.87  Aligned_cols=90  Identities=19%  Similarity=0.283  Sum_probs=68.8

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCCCCceeEE
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAAQSTVDLV  104 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv  104 (265)
                      .++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.|++.       .++.+..       +|++   ..+++||+|
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~-------~d~~---~~~~~fD~v  131 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEV-------GDLE---SLLGRFDTV  131 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEE-------cCch---hccCCcCEE
Confidence            4567899999999999999999988999999999999998752       2455555       4432   235789999


Q ss_pred             EeccccccC-C--hhHHHHHHHHHhcCCCcE
Q 024647          105 TIAQAMHWF-D--LPQFYNQVKWVLKKPNGV  132 (265)
Q Consensus       105 ~~~~~~~~~-~--~~~~l~~~~~~Lk~pgG~  132 (265)
                      ++..++|++ +  ....++++.+.++ +++.
T Consensus       132 ~~~~~l~~~~~~~~~~~l~~l~~~~~-~~~~  161 (230)
T PRK07580        132 VCLDVLIHYPQEDAARMLAHLASLTR-GSLI  161 (230)
T ss_pred             EEcchhhcCCHHHHHHHHHHHHhhcC-CeEE
Confidence            999998665 2  3357777777665 4443

>PRK00811 spermidine synthase; Provisional

Probab=99.33  E-value=1.6e-11  Score=104.72  Aligned_cols=112  Identities=16%  Similarity=0.219  Sum_probs=80.4

Q ss_pred             CcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC-----------CCceEEecCCc
Q 024647           19 YPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL-----------PNIRYELTSPA   85 (265)
Q Consensus        19 y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-----------~~~~~~~~~~~   85 (265)
                      |.+.+........+.+.+||++|||+|.+++.++++.  .+|++||+++.+++.|++.           ++++++.    
T Consensus        62 Y~e~l~h~~~~~~~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~----  137 (283)
T PRK00811         62 YHEMMTHVPLFAHPNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVI----  137 (283)
T ss_pred             HHHHhhhHHHhhCCCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEE----
Confidence            4333333323334567899999999999999998873  4799999999999999862           2344444    


Q ss_pred             cchhhhhhc-cCCCCceeEEEeccccccCC-----hhHHHHHHHHHhcCCCcEEEEEec
Q 024647           86 MSIAELEQN-VAAQSTVDLVTIAQAMHWFD-----LPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        86 ~~~~d~~~~-~~~~~~~Dlv~~~~~~~~~~-----~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                         +|+..+ ....++||+|++...-++..     ...+++.+.+.|+ |||+++++..
T Consensus       138 ---~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~-~gGvlv~~~~  192 (283)
T PRK00811        138 ---GDGIKFVAETENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALK-EDGIFVAQSG  192 (283)
T ss_pred             ---CchHHHHhhCCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcC-CCcEEEEeCC
Confidence               555443 22457899999976555432     2568899999999 9999998644

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.31  E-value=9.7e-12  Score=107.52  Aligned_cols=96  Identities=14%  Similarity=0.146  Sum_probs=75.3

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCCCCcee
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAAQSTVD  102 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~D  102 (265)
                      .+..+|||||||+|.++..++++++  +++++|. +.+++.+++.       .++++..       +|+.+.+++  .+|
T Consensus       148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~-------~d~~~~~~~--~~D  217 (306)
T TIGR02716       148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIA-------VDIYKESYP--EAD  217 (306)
T ss_pred             CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEe-------cCccCCCCC--CCC
Confidence            4557999999999999999999886  5999997 7889887642       2455665       565544333  369


Q ss_pred             EEEeccccccCCh---hHHHHHHHHHhcCCCcEEEEEec
Q 024647          103 LVTIAQAMHWFDL---PQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       103 lv~~~~~~~~~~~---~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      +|++...+|..+.   ..++++++++|+ |||++++.+.
T Consensus       218 ~v~~~~~lh~~~~~~~~~il~~~~~~L~-pgG~l~i~d~  255 (306)
T TIGR02716       218 AVLFCRILYSANEQLSTIMCKKAFDAMR-SGGRLLILDM  255 (306)
T ss_pred             EEEeEhhhhcCChHHHHHHHHHHHHhcC-CCCEEEEEEe
Confidence            9999999886633   468999999999 9999998765

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.31  E-value=3e-11  Score=101.33  Aligned_cols=109  Identities=23%  Similarity=0.247  Sum_probs=80.0

Q ss_pred             cHHHHHHHHhhCC-CCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC------CCceEEecCCccchhh
Q 024647           20 PEELFKFITSKTT-NHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAE   90 (265)
Q Consensus        20 ~~~l~~~l~~~~~-~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d   90 (265)
                      +..+++.+..... .+.+|||+|||+|.++..+++..+  +++|+|+++.+++.++..      .++.+..       +|
T Consensus        73 ~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~-------~d  145 (251)
T TIGR03534        73 TEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQ-------SD  145 (251)
T ss_pred             hHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEE-------Cc
Confidence            3556666665543 345899999999999999998753  799999999999988752      3466666       55


Q ss_pred             hhhccCCCCceeEEEeccccccC-C--------------------------hhHHHHHHHHHhcCCCcEEEEEe
Q 024647           91 LEQNVAAQSTVDLVTIAQAMHWF-D--------------------------LPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        91 ~~~~~~~~~~~Dlv~~~~~~~~~-~--------------------------~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      +.. +.+.++||+|+++...+.. +                          ...+++++.++|+ |||.+++..
T Consensus       146 ~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~-~gG~~~~~~  217 (251)
T TIGR03534       146 WFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLK-PGGWLLLEI  217 (251)
T ss_pred             hhc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcc-cCCEEEEEE
Confidence            544 2456789999997543321 0                          1257889999999 999998854

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.31  E-value=6.7e-12  Score=98.23  Aligned_cols=75  Identities=17%  Similarity=0.201  Sum_probs=64.4

Q ss_pred             EEEcCCHHHHHHHHcC---------CCceEEecCCccchhhhhhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcC
Q 024647           59 IGTETSPKQIEFATKL---------PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKK  128 (265)
Q Consensus        59 ~~vD~s~~~~~~a~~~---------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~  128 (265)
                      +|+|+|+.|++.|++.         .++++.+       +|++++++++++||+|++.+++|++ |+..+++++.|+|| 
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~-------~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLk-   72 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIE-------GDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLK-   72 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEE-------echhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcC-
Confidence            4899999999998642         1356666       7888899889999999999999988 99999999999999 


Q ss_pred             CCcEEEEEecCCC
Q 024647          129 PNGVIATWCYTVP  141 (265)
Q Consensus       129 pgG~l~~~~~~~~  141 (265)
                      |||.+++.++..+
T Consensus        73 pGG~l~i~d~~~~   85 (160)
T PLN02232         73 PGSRVSILDFNKS   85 (160)
T ss_pred             cCeEEEEEECCCC
Confidence            9999999877643

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.30  E-value=5.8e-11  Score=97.20  Aligned_cols=118  Identities=14%  Similarity=-0.006  Sum_probs=88.4

Q ss_pred             cHHHHHHHHhhC-CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCC-----------CceEEecCCccc
Q 024647           20 PEELFKFITSKT-TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLP-----------NIRYELTSPAMS   87 (265)
Q Consensus        20 ~~~l~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-----------~~~~~~~~~~~~   87 (265)
                      .+-+.+++.... +++.+||+.|||.|.-...|++++.+|+|+|+|+..++.+.+..           ...+....+++.
T Consensus        29 np~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~  108 (226)
T PRK13256         29 NEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIY  108 (226)
T ss_pred             CHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEE
Confidence            566667765543 35579999999999999999999999999999999999874310           011122234444


Q ss_pred             hhhhhhccCC---CCceeEEEeccccccCCh---hHHHHHHHHHhcCCCcEEEEEec
Q 024647           88 IAELEQNVAA---QSTVDLVTIAQAMHWFDL---PQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        88 ~~d~~~~~~~---~~~~Dlv~~~~~~~~~~~---~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      .+|+-+++..   .+.||+|+-..+++.+++   .+..+.+.++|+ |||.+++...
T Consensus       109 ~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~-pgg~llll~~  164 (226)
T PRK13256        109 VADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCS-NNTQILLLVM  164 (226)
T ss_pred             EccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhC-CCcEEEEEEE
Confidence            4777776531   257999999998888854   479999999999 9999886554

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.29  E-value=6.5e-11  Score=95.80  Aligned_cols=112  Identities=18%  Similarity=0.254  Sum_probs=78.0

Q ss_pred             CCCcHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC------CCceEEecCCcc
Q 024647           17 PNYPEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL------PNIRYELTSPAM   86 (265)
Q Consensus        17 p~y~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~   86 (265)
                      |.-+.+....+....  .++.+|||+|||+|.++..+++..  .+|+++|+|+.|++.+++.      .++.+...    
T Consensus        22 p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~----   97 (196)
T PRK07402         22 PLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEG----   97 (196)
T ss_pred             CCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEEC----
Confidence            433455554555554  356899999999999999998654  5799999999999988752      35666664    


Q ss_pred             chhhhhh-ccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           87 SIAELEQ-NVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        87 ~~~d~~~-~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                         |+.+ +......+|.++....   .+...+++++.++|+ |||.+++..+.
T Consensus        98 ---d~~~~~~~~~~~~d~v~~~~~---~~~~~~l~~~~~~Lk-pgG~li~~~~~  144 (196)
T PRK07402         98 ---SAPECLAQLAPAPDRVCIEGG---RPIKEILQAVWQYLK-PGGRLVATASS  144 (196)
T ss_pred             ---chHHHHhhCCCCCCEEEEECC---cCHHHHHHHHHHhcC-CCeEEEEEeec
Confidence               3332 1111223566655321   245789999999999 99999987654

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.29  E-value=3.8e-11  Score=97.29  Aligned_cols=97  Identities=18%  Similarity=0.210  Sum_probs=73.1

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhc-cCCCCc
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQN-VAAQST  100 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~-~~~~~~  100 (265)
                      .++.+|||+|||+|.++..++...   .+|+++|+++.|++.+++.       .++.+..       +|+.+. +...+.
T Consensus        39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~-------~d~~~~l~~~~~~  111 (198)
T PRK00377         39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIK-------GEAPEILFTINEK  111 (198)
T ss_pred             CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEE-------echhhhHhhcCCC
Confidence            466899999999999999987652   4799999999999987641       3455555       444432 222368


Q ss_pred             eeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          101 VDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       101 ~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      ||+|++...  ..+...+++++.++|+ |||.+++...
T Consensus       112 ~D~V~~~~~--~~~~~~~l~~~~~~Lk-pgG~lv~~~~  146 (198)
T PRK00377        112 FDRIFIGGG--SEKLKEIISASWEIIK-KGGRIVIDAI  146 (198)
T ss_pred             CCEEEECCC--cccHHHHHHHHHHHcC-CCcEEEEEee
Confidence            999998642  2366789999999999 9999987443

>PHA03411 putative methyltransferase; Provisional

Probab=99.29  E-value=3.4e-11  Score=100.56  Aligned_cols=108  Identities=18%  Similarity=0.241  Sum_probs=80.1

Q ss_pred             cHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHc-CCCceEEecCCccchhhhhhccC
Q 024647           20 PEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATK-LPNIRYELTSPAMSIAELEQNVA   96 (265)
Q Consensus        20 ~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~~   96 (265)
                      |+.++..+........+|||+|||+|.++..++.+.  .+|+++|+|+.|++.+++ .+++.+..       +|+..+. 
T Consensus        51 P~~i~~~f~~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~-------~D~~e~~-  122 (279)
T PHA03411         51 PEGLAWDFTIDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWIT-------SDVFEFE-  122 (279)
T ss_pred             CHHHHHHHHhccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEE-------Cchhhhc-
Confidence            556664443223345789999999999999988764  489999999999999986 35666666       6666654 


Q ss_pred             CCCceeEEEeccccccCC---------------------hhHHHHHHHHHhcCCCcEEEEE
Q 024647           97 AQSTVDLVTIAQAMHWFD---------------------LPQFYNQVKWVLKKPNGVIATW  136 (265)
Q Consensus        97 ~~~~~Dlv~~~~~~~~~~---------------------~~~~l~~~~~~Lk~pgG~l~~~  136 (265)
                      ...+||+|+++..+++.+                     ..+++.....+|+ |+|.+.+.
T Consensus       123 ~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~-p~G~~~~~  182 (279)
T PHA03411        123 SNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIV-PTGSAGFA  182 (279)
T ss_pred             ccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheec-CCceEEEE
Confidence            346899999998887642                     1356677788999 99976654

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.29  E-value=3.6e-11  Score=85.73  Aligned_cols=93  Identities=28%  Similarity=0.451  Sum_probs=74.9

Q ss_pred             eEEEEcCCcchhHHHHHh-cCCcEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhccC-CCCceeEEEec
Q 024647           36 LAWDVGTGSGQAAASLSG-IFENVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQNVA-AQSTVDLVTIA  107 (265)
Q Consensus        36 ~vlDvGcG~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~~~-~~~~~Dlv~~~  107 (265)
                      +++|+|||+|..+..+++ ...+++++|+++.++..+++      ..++.+..       +|+.+... ..+++|+|+++
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~d~i~~~   73 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLK-------GDAEELPPEADESFDVIISD   73 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEE-------cChhhhccccCCceEEEEEc
Confidence            489999999999999988 45689999999999988772      24455655       44444432 45789999999


Q ss_pred             ccccc-C-ChhHHHHHHHHHhcCCCcEEEEE
Q 024647          108 QAMHW-F-DLPQFYNQVKWVLKKPNGVIATW  136 (265)
Q Consensus       108 ~~~~~-~-~~~~~l~~~~~~Lk~pgG~l~~~  136 (265)
                      ..+++ . +...+++.+.+.|+ |||.+++.
T Consensus        74 ~~~~~~~~~~~~~l~~~~~~l~-~~g~~~~~  103 (107)
T cd02440          74 PPLHHLVEDLARFLEEARRLLK-PGGVLVLT  103 (107)
T ss_pred             cceeehhhHHHHHHHHHHHHcC-CCCEEEEE
Confidence            99988 5 67789999999999 99999875

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK01581 speE spermidine synthase; Validated

Probab=99.28  E-value=4.3e-11  Score=103.64  Aligned_cols=112  Identities=16%  Similarity=0.178  Sum_probs=82.0

Q ss_pred             CcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC-------------CCceEEecC
Q 024647           19 YPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL-------------PNIRYELTS   83 (265)
Q Consensus        19 y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-------------~~~~~~~~~   83 (265)
                      |.+.++.-.....+.+.+||++|||+|...+.+.++.  .+|++||+++.|++.|++.             +++++..  
T Consensus       136 YHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi--  213 (374)
T PRK01581        136 YHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHV--  213 (374)
T ss_pred             HHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEE--
Confidence            5556665555555677899999999999999998875  4799999999999999852             2344444  


Q ss_pred             Cccchhhhhh-ccCCCCceeEEEecccccc------CChhHHHHHHHHHhcCCCcEEEEEec
Q 024647           84 PAMSIAELEQ-NVAAQSTVDLVTIAQAMHW------FDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        84 ~~~~~~d~~~-~~~~~~~~Dlv~~~~~~~~------~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                           +|+.. +....+.||+|++...-..      +-...+++.+.+.|+ |||+++++..
T Consensus       214 -----~Da~~fL~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~Lk-PgGV~V~Qs~  269 (374)
T PRK01581        214 -----CDAKEFLSSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLT-EDGAFVCQSN  269 (374)
T ss_pred             -----CcHHHHHHhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcC-CCcEEEEecC
Confidence                 55444 2334568999999853211      112468999999999 9999988754

>PRK04457 spermidine synthase; Provisional

Probab=99.28  E-value=2.4e-11  Score=102.55  Aligned_cols=99  Identities=13%  Similarity=0.238  Sum_probs=74.2

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhc-cCCCCce
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQN-VAAQSTV  101 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~-~~~~~~~  101 (265)
                      +++.+|||||||+|.++..++++.+  +++++|+++.+++.|++.       ++++++.       +|+.+. ....++|
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~-------~Da~~~l~~~~~~y  137 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIE-------ADGAEYIAVHRHST  137 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEE-------CCHHHHHHhCCCCC
Confidence            4567899999999999999988764  699999999999999862       3455665       454332 2223589


Q ss_pred             eEEEecccccc------CChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          102 DLVTIAQAMHW------FDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       102 Dlv~~~~~~~~------~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      |+|++.. ++-      +....+++++.++|+ |||++++..+.
T Consensus       138 D~I~~D~-~~~~~~~~~l~t~efl~~~~~~L~-pgGvlvin~~~  179 (262)
T PRK04457        138 DVILVDG-FDGEGIIDALCTQPFFDDCRNALS-SDGIFVVNLWS  179 (262)
T ss_pred             CEEEEeC-CCCCCCccccCcHHHHHHHHHhcC-CCcEEEEEcCC
Confidence            9999863 221      123689999999999 99999985443

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.27  E-value=3e-11  Score=99.46  Aligned_cols=106  Identities=18%  Similarity=0.215  Sum_probs=79.1

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhcc--CCCCceeEEEec
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNV--AAQSTVDLVTIA  107 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~Dlv~~~  107 (265)
                      +...+|||+|||+|.++..++++.  .+|++||+++.|.+.|++.-+.+-....+++.++|+.++.  ....+||+|+|+
T Consensus        43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~N  122 (248)
T COG4123          43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICN  122 (248)
T ss_pred             ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeC
Confidence            346889999999999999999985  4799999999999999863111222333344447877764  234479999998


Q ss_pred             cccccC-------------------ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          108 QAMHWF-------------------DLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       108 ~~~~~~-------------------~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      -..+-.                   +.+.+++.+.++|| |||.+++...
T Consensus       123 PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk-~~G~l~~V~r  171 (248)
T COG4123         123 PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLK-PGGRLAFVHR  171 (248)
T ss_pred             CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHcc-CCCEEEEEec
Confidence            754322                   34678999999999 9999998665

>PRK14968 putative methyltransferase; Provisional

Probab=99.27  E-value=6.6e-11  Score=94.81  Aligned_cols=98  Identities=22%  Similarity=0.256  Sum_probs=73.5

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC------CC--ceEEecCCccchhhhhhccCCCCceeE
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL------PN--IRYELTSPAMSIAELEQNVAAQSTVDL  103 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~--~~~~~~~~~~~~~d~~~~~~~~~~~Dl  103 (265)
                      .++.+|||+|||+|.++..+++...+++++|+|+.+++.+++.      .+  +.+..       .|+.+. +.+.+||+
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~-------~d~~~~-~~~~~~d~   93 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIR-------SDLFEP-FRGDKFDV   93 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEe-------cccccc-ccccCceE
Confidence            4567899999999999999999888999999999999988642      12  45554       444332 34458999


Q ss_pred             EEeccccccC----------------------ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          104 VTIAQAMHWF----------------------DLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       104 v~~~~~~~~~----------------------~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      |+++..+...                      ....+++++.++|+ |||.+++...
T Consensus        94 vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk-~gG~~~~~~~  149 (188)
T PRK14968         94 ILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLK-PGGRILLLQS  149 (188)
T ss_pred             EEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcC-CCeEEEEEEc
Confidence            9987643321                      13458999999999 9999887654

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.25  E-value=6.1e-12  Score=107.04  Aligned_cols=119  Identities=19%  Similarity=0.242  Sum_probs=83.0

Q ss_pred             HHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC---CCc--eEEecCCccchhhhhhc
Q 024647           21 EELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL---PNI--RYELTSPAMSIAELEQN   94 (265)
Q Consensus        21 ~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~---~~~--~~~~~~~~~~~~d~~~~   94 (265)
                      .-.+++|..+..++.+|||+|||||.++...++.++ +|+|+|++|..++.|+..   .++  .+....       ..+ 
T Consensus       149 ~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~-------~~~-  220 (295)
T PF06325_consen  149 RLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSL-------SED-  220 (295)
T ss_dssp             HHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESC-------TSC-
T ss_pred             HHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEE-------ecc-
Confidence            445677777778889999999999999999999998 599999999999998862   111  221110       111 


Q ss_pred             cCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHhhc
Q 024647           95 VAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQ  152 (265)
Q Consensus        95 ~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~~  152 (265)
                       ...++||+|++|-..+  -....+..+.++|+ |||.++++..-... ...+.++|+
T Consensus       221 -~~~~~~dlvvANI~~~--vL~~l~~~~~~~l~-~~G~lIlSGIl~~~-~~~v~~a~~  273 (295)
T PF06325_consen  221 -LVEGKFDLVVANILAD--VLLELAPDIASLLK-PGGYLILSGILEEQ-EDEVIEAYK  273 (295)
T ss_dssp             -TCCS-EEEEEEES-HH--HHHHHHHHCHHHEE-EEEEEEEEEEEGGG-HHHHHHHHH
T ss_pred             -cccccCCEEEECCCHH--HHHHHHHHHHHhhC-CCCEEEEccccHHH-HHHHHHHHH
Confidence             2347899999984322  12357788899999 99999998775433 244455544

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.24  E-value=3.5e-11  Score=106.22  Aligned_cols=110  Identities=17%  Similarity=0.235  Sum_probs=78.9

Q ss_pred             cHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC-----CCceEEecCCccchhhhh
Q 024647           20 PEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL-----PNIRYELTSPAMSIAELE   92 (265)
Q Consensus        20 ~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~d~~   92 (265)
                      ++.+++.+.+..+++.+|||+|||+|.++..++...  .+|+|+|+|+.|++.|++.     .++.+.+       +|+.
T Consensus       238 TE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~-------gDl~  310 (423)
T PRK14966        238 TEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAH-------GSWF  310 (423)
T ss_pred             HHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEE-------cchh
Confidence            567777777666666789999999999999998764  4799999999999988752     2455555       5553


Q ss_pred             hccC-CCCceeEEEecccccc------C------C--------------hhHHHHHHHHHhcCCCcEEEEEe
Q 024647           93 QNVA-AQSTVDLVTIAQAMHW------F------D--------------LPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        93 ~~~~-~~~~~Dlv~~~~~~~~------~------~--------------~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      +... ..++||+|+++-...-      .      +              ...+++.+.+.|+ |||.+++..
T Consensus       311 e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lk-pgG~lilEi  381 (423)
T PRK14966        311 DTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLA-EGGFLLLEH  381 (423)
T ss_pred             ccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcC-CCcEEEEEE
Confidence            3222 2457999999763210      0      0              1256667788999 999988744

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.23  E-value=4.2e-11  Score=102.23  Aligned_cols=110  Identities=18%  Similarity=0.145  Sum_probs=77.0

Q ss_pred             cHHHHHHHHh-hC--CCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC-------CCceEEecCCccc
Q 024647           20 PEELFKFITS-KT--TNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL-------PNIRYELTSPAMS   87 (265)
Q Consensus        20 ~~~l~~~l~~-~~--~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~   87 (265)
                      ...++..... ..  .++.+|||+|||+|.++..++++++  +|+|+|+|+.+++.|++.       .++.+..      
T Consensus       105 te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~------  178 (284)
T TIGR03533       105 IAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQ------  178 (284)
T ss_pred             hHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE------
Confidence            3455544433 22  2457899999999999999998764  799999999999988752       2456666      


Q ss_pred             hhhhhhccCCCCceeEEEecccc------c-----c-CC--------------hhHHHHHHHHHhcCCCcEEEEEec
Q 024647           88 IAELEQNVAAQSTVDLVTIAQAM------H-----W-FD--------------LPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        88 ~~d~~~~~~~~~~~Dlv~~~~~~------~-----~-~~--------------~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                       +|+.+. +++++||+|+++-..      .     + .+              ...+++++.++|+ |||.+++...
T Consensus       179 -~D~~~~-~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~-~gG~l~~e~g  252 (284)
T TIGR03533       179 -SDLFAA-LPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLN-ENGVLVVEVG  252 (284)
T ss_pred             -Cchhhc-cCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcC-CCCEEEEEEC
Confidence             554322 345689999997311      0     0 01              1357889999999 9999988554

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.22  E-value=1.6e-10  Score=99.91  Aligned_cols=104  Identities=18%  Similarity=0.184  Sum_probs=76.0

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCC---cEEEEcCCHHHHHHHHc------CCCceEEecCCccchh
Q 024647           21 EELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFE---NVIGTETSPKQIEFATK------LPNIRYELTSPAMSIA   89 (265)
Q Consensus        21 ~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~   89 (265)
                      +.+...+....  +++.+|||+|||+|..+..+++...   .|+++|+++.|++.|++      ..++.+..       +
T Consensus        66 p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~-------g  138 (322)
T PRK13943         66 PSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVC-------G  138 (322)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEe-------C
Confidence            44555554433  4668999999999999999998764   49999999999998875      23566666       5


Q ss_pred             hhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647           90 ELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        90 d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      |+.......++||+|++..+++.     ....+.+.|+ |||.+++..
T Consensus       139 D~~~~~~~~~~fD~Ii~~~g~~~-----ip~~~~~~Lk-pgG~Lvv~~  180 (322)
T PRK13943        139 DGYYGVPEFAPYDVIFVTVGVDE-----VPETWFTQLK-EGGRVIVPI  180 (322)
T ss_pred             ChhhcccccCCccEEEECCchHH-----hHHHHHHhcC-CCCEEEEEe
Confidence            55544444468999999765443     3345788999 999988743

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=99.22  E-value=1.7e-10  Score=94.74  Aligned_cols=92  Identities=20%  Similarity=0.292  Sum_probs=76.7

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecccccc
Q 024647           33 NHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHW  112 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~  112 (265)
                      ...++||||+|.|..|..++..+.+|+++|.|+.|....++ .+.+....      .+   +.-.+.+||+|.|.+.+-.
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~-kg~~vl~~------~~---w~~~~~~fDvIscLNvLDR  163 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSK-KGFTVLDI------DD---WQQTDFKFDVISCLNVLDR  163 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHh-CCCeEEeh------hh---hhccCCceEEEeehhhhhc
Confidence            34679999999999999999999999999999999998876 35544431      22   3223468999999999877


Q ss_pred             C-ChhHHHHHHHHHhcCCCcEEEE
Q 024647          113 F-DLPQFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus       113 ~-~~~~~l~~~~~~Lk~pgG~l~~  135 (265)
                      . +|..+++++++.|+ |+|.+++
T Consensus       164 c~~P~~LL~~i~~~l~-p~G~lil  186 (265)
T PF05219_consen  164 CDRPLTLLRDIRRALK-PNGRLIL  186 (265)
T ss_pred             cCCHHHHHHHHHHHhC-CCCEEEE
Confidence            7 78899999999999 9999876

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.22  E-value=1.7e-10  Score=98.60  Aligned_cols=113  Identities=27%  Similarity=0.324  Sum_probs=79.3

Q ss_pred             CCCCcHHHHHHHHhhC--CC-CCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC------C-CceEEecC
Q 024647           16 RPNYPEELFKFITSKT--TN-HELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL------P-NIRYELTS   83 (265)
Q Consensus        16 rp~y~~~l~~~l~~~~--~~-~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~------~-~~~~~~~~   83 (265)
                      ||. ++.+++.+....  .. ..+|||+|||+|.++..++..++  +|+|+|+|+.+++.|++.      . ++.+..  
T Consensus        95 r~e-te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~--  171 (284)
T TIGR00536        95 RPE-TEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQ--  171 (284)
T ss_pred             CCc-cHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE--
Confidence            443 466666665433  22 26899999999999999998764  799999999999988752      1 266666  


Q ss_pred             CccchhhhhhccCCCCceeEEEeccc-------------cccC-------------ChhHHHHHHHHHhcCCCcEEEEEe
Q 024647           84 PAMSIAELEQNVAAQSTVDLVTIAQA-------------MHWF-------------DLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        84 ~~~~~~d~~~~~~~~~~~Dlv~~~~~-------------~~~~-------------~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                           +|+.+. ++..+||+|+++-.             .++-             ....+++++.+.|+ |||.+++..
T Consensus       172 -----~d~~~~-~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~-~gG~l~~e~  244 (284)
T TIGR00536       172 -----SNLFEP-LAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLK-PNGFLVCEI  244 (284)
T ss_pred             -----Cchhcc-CcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhcc-CCCEEEEEE
Confidence                 454332 34448999999731             1111             12357888999999 999998755


Q ss_pred             c
Q 024647          138 Y  138 (265)
Q Consensus       138 ~  138 (265)
                      .
T Consensus       245 g  245 (284)
T TIGR00536       245 G  245 (284)
T ss_pred             C
Confidence            4

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.21  E-value=5.9e-11  Score=93.75  Aligned_cols=94  Identities=11%  Similarity=0.017  Sum_probs=70.6

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC----CCceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL----PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIA  107 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~  107 (265)
                      .++.+|||+|||+|.++..++++..+++++|+++.|++.+++.    .++.+..       +|+.+++.++..+|.|+++
T Consensus        12 ~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~-------~D~~~~~~~~~~~d~vi~n   84 (169)
T smart00650       12 RPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAADNLTVIH-------GDALKFDLPKLQPYKVVGN   84 (169)
T ss_pred             CCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccCCCEEEEE-------CchhcCCccccCCCEEEEC
Confidence            3557899999999999999999988999999999999998753    3455555       7777777666679999998


Q ss_pred             cccccCChhHHHHHHHHH--hcCCCcEEEE
Q 024647          108 QAMHWFDLPQFYNQVKWV--LKKPNGVIAT  135 (265)
Q Consensus       108 ~~~~~~~~~~~l~~~~~~--Lk~pgG~l~~  135 (265)
                      ...|..  ...+..+.+.  +. ++|.+++
T Consensus        85 ~Py~~~--~~~i~~~l~~~~~~-~~~~l~~  111 (169)
T smart00650       85 LPYNIS--TPILFKLLEEPPAF-RDAVLMV  111 (169)
T ss_pred             CCcccH--HHHHHHHHhcCCCc-ceEEEEE
Confidence            777643  2333333322  44 5777766

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.20  E-value=4.6e-11  Score=100.37  Aligned_cols=110  Identities=16%  Similarity=0.144  Sum_probs=82.9

Q ss_pred             CCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC------CCceEEecCCccchhhhhhccCCCCceeEEE
Q 024647           34 HELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAELEQNVAAQSTVDLVT  105 (265)
Q Consensus        34 ~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~  105 (265)
                      ..+|||+|||.|.++..+++..+  +++.+|+|...++.+++.      .+..+..       .|... +..+ +||+|+
T Consensus       159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~-------s~~~~-~v~~-kfd~Ii  229 (300)
T COG2813         159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWA-------SNLYE-PVEG-KFDLII  229 (300)
T ss_pred             CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEE-------ecccc-cccc-cccEEE
Confidence            35899999999999999999987  799999999999999862      2222222       33222 2233 899999


Q ss_pred             eccccccC-Ch-----hHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHhhcc
Q 024647          106 IAQAMHWF-DL-----PQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQP  153 (265)
Q Consensus       106 ~~~~~~~~-~~-----~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~~~  153 (265)
                      |+-.+|-- +.     .+++.++.+.|+ +||.|.++..+.......+.++|..
T Consensus       230 sNPPfh~G~~v~~~~~~~~i~~A~~~L~-~gGeL~iVan~~l~y~~~L~~~Fg~  282 (300)
T COG2813         230 SNPPFHAGKAVVHSLAQEIIAAAARHLK-PGGELWIVANRHLPYEKKLKELFGN  282 (300)
T ss_pred             eCCCccCCcchhHHHHHHHHHHHHHhhc-cCCEEEEEEcCCCChHHHHHHhcCC
Confidence            99999954 21     268999999999 9999988777655555666666653

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.20  E-value=3.4e-10  Score=88.73  Aligned_cols=98  Identities=17%  Similarity=0.281  Sum_probs=77.3

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhccCCCCceeE
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQNVAAQSTVDL  103 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dl  103 (265)
                      .++++++|||||||..+..++..+  .+|+++|-++++++..++      .+|+..+.       +++.+.-....++|.
T Consensus        33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~-------g~Ap~~L~~~~~~da  105 (187)
T COG2242          33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVE-------GDAPEALPDLPSPDA  105 (187)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEe-------ccchHhhcCCCCCCE
Confidence            477899999999999999999554  479999999999998765      36777776       555444222227999


Q ss_pred             EEeccccccCChhHHHHHHHHHhcCCCcEEEEEecCC
Q 024647          104 VTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTV  140 (265)
Q Consensus       104 v~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~~  140 (265)
                      |+....   -..+.+++.+...|+ |||.+++-....
T Consensus       106 iFIGGg---~~i~~ile~~~~~l~-~ggrlV~naitl  138 (187)
T COG2242         106 IFIGGG---GNIEEILEAAWERLK-PGGRLVANAITL  138 (187)
T ss_pred             EEECCC---CCHHHHHHHHHHHcC-cCCeEEEEeecH
Confidence            999877   456789999999999 999999855543

>PRK03612 spermidine synthase; Provisional

Probab=99.19  E-value=2.2e-10  Score=105.67  Aligned_cols=112  Identities=18%  Similarity=0.196  Sum_probs=80.5

Q ss_pred             CcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC-------------CCceEEecC
Q 024647           19 YPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL-------------PNIRYELTS   83 (265)
Q Consensus        19 y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-------------~~~~~~~~~   83 (265)
                      |.+.+..-.....+++++|||+|||+|..++.++++.  .+|+++|+++++++.+++.             ++++++.  
T Consensus       283 y~e~l~~~~l~~~~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~--  360 (521)
T PRK03612        283 YHEALVHPAMAASARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVN--  360 (521)
T ss_pred             HHHHHHHHHHhhCCCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEE--
Confidence            3444443222334567899999999999999998875  4799999999999999862             2344444  


Q ss_pred             Cccchhhhhhc-cCCCCceeEEEeccccccC-C-----hhHHHHHHHHHhcCCCcEEEEEec
Q 024647           84 PAMSIAELEQN-VAAQSTVDLVTIAQAMHWF-D-----LPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        84 ~~~~~~d~~~~-~~~~~~~Dlv~~~~~~~~~-~-----~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                           +|..+. ...+++||+|+++...++. .     ...+++.+.+.|+ |||.+++...
T Consensus       361 -----~Da~~~l~~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~-pgG~lv~~~~  416 (521)
T PRK03612        361 -----DDAFNWLRKLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLA-PDGLLVVQST  416 (521)
T ss_pred             -----ChHHHHHHhCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcC-CCeEEEEecC
Confidence                 555542 2234689999998654442 1     2358999999999 9999998653

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=99.19  E-value=8.4e-11  Score=101.94  Aligned_cols=104  Identities=19%  Similarity=0.191  Sum_probs=70.5

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcC-CcEEEEcCCHHHHHHHHcC----------------CCceEEecCCccchhhhhh-c
Q 024647           33 NHELAWDVGTGSGQAAASLSGIF-ENVIGTETSPKQIEFATKL----------------PNIRYELTSPAMSIAELEQ-N   94 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~----------------~~~~~~~~~~~~~~~d~~~-~   94 (265)
                      ++.+|||+|||.|.-...+.... ..++|+|++...+++|+++                -...+...+...  ..+.. +
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~--~~l~~~~  139 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFS--ESLREKL  139 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCC--SHHHCTS
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheecccccc--chhhhhc
Confidence            67899999999988777776654 5799999999999998752                022334432211  11222 2


Q ss_pred             cCCCCceeEEEeccccccC-Chh----HHHHHHHHHhcCCCcEEEEEecC
Q 024647           95 VAAQSTVDLVTIAQAMHWF-DLP----QFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        95 ~~~~~~~Dlv~~~~~~~~~-~~~----~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +.....||+|.|.+++|+. ..+    .++..+.+.|+ |||.|+..++.
T Consensus       140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk-~GG~FIgT~~d  188 (331)
T PF03291_consen  140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLK-PGGYFIGTTPD  188 (331)
T ss_dssp             SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEE-EEEEEEEEEE-
T ss_pred             cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcC-CCCEEEEEecC
Confidence            2223599999999999997 433    48999999999 99999987775

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.18  E-value=7.7e-11  Score=101.59  Aligned_cols=95  Identities=18%  Similarity=0.165  Sum_probs=70.8

Q ss_pred             CeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCCCCceeEEE
Q 024647           35 ELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAAQSTVDLVT  105 (265)
Q Consensus        35 ~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~  105 (265)
                      .+|||+|||+|.++..++..++  +|+++|+|+.+++.|++.       .++.+..       +|+.+. +++++||+|+
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~-------~D~~~~-l~~~~fDlIv  206 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIE-------SDLFAA-LPGRRYDLIV  206 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEE-------Cchhhh-CCCCCccEEE
Confidence            6899999999999999998764  799999999999988752       2356666       554332 2456899999


Q ss_pred             ecccc-------------cc-CC------------hhHHHHHHHHHhcCCCcEEEEEec
Q 024647          106 IAQAM-------------HW-FD------------LPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       106 ~~~~~-------------~~-~~------------~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      ++-..             ++ ..            ...+++++.++|+ |||.+++...
T Consensus       207 sNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~-pgG~l~~E~g  264 (307)
T PRK11805        207 SNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLT-EDGVLVVEVG  264 (307)
T ss_pred             ECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcC-CCCEEEEEEC
Confidence            97311             11 00            1367889999999 9999998543

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.18  E-value=2.9e-10  Score=96.78  Aligned_cols=109  Identities=20%  Similarity=0.251  Sum_probs=78.5

Q ss_pred             cHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC------CCceEEecCCccchh
Q 024647           20 PEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL------PNIRYELTSPAMSIA   89 (265)
Q Consensus        20 ~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~   89 (265)
                      .+.+++.+....  .++.+|||+|||+|..+..++...  .+++|+|+|+.+++.+++.      .++.+..       +
T Consensus        93 te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~-------~  165 (275)
T PRK09328         93 TEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQ-------G  165 (275)
T ss_pred             cHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEE-------c
Confidence            466677666432  356789999999999999999887  5799999999999988752      3455555       4


Q ss_pred             hhhhccCCCCceeEEEeccccc------cC---------------------ChhHHHHHHHHHhcCCCcEEEEEe
Q 024647           90 ELEQNVAAQSTVDLVTIAQAMH------WF---------------------DLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        90 d~~~~~~~~~~~Dlv~~~~~~~------~~---------------------~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      |+... .+.++||+|+++....      .+                     ....+++++.++|+ |||.+++..
T Consensus       166 d~~~~-~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk-~gG~l~~e~  238 (275)
T PRK09328        166 DWFEP-LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLK-PGGWLLLEI  238 (275)
T ss_pred             cccCc-CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcc-cCCEEEEEE
Confidence            44322 2357899999964221      00                     02357788889999 999998844

>PHA03412 putative methyltransferase; Provisional

Probab=99.17  E-value=2.8e-10  Score=93.06  Aligned_cols=106  Identities=10%  Similarity=0.125  Sum_probs=75.5

Q ss_pred             cHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhc-----CCcEEEEcCCHHHHHHHHcC-CCceEEecCCccchhhhhh
Q 024647           20 PEELFKFITSKTTNHELAWDVGTGSGQAAASLSGI-----FENVIGTETSPKQIEFATKL-PNIRYELTSPAMSIAELEQ   93 (265)
Q Consensus        20 ~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~-----~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~d~~~   93 (265)
                      |..++..+......+.+|||+|||+|.++..++++     ..+|+++|+++.+++.|++. +++.+..       +|+..
T Consensus        36 P~~iAr~~~i~~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~-------~D~~~  108 (241)
T PHA03412         36 PIGLARDFTIDACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWIN-------ADALT  108 (241)
T ss_pred             CHHHHHHHHHhccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEE-------cchhc
Confidence            55565555432334679999999999999998865     24799999999999999863 4566666       66655


Q ss_pred             ccCCCCceeEEEeccccccC---C----------hhHHHHHHHHHhcCCCcEEEE
Q 024647           94 NVAAQSTVDLVTIAQAMHWF---D----------LPQFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus        94 ~~~~~~~~Dlv~~~~~~~~~---~----------~~~~l~~~~~~Lk~pgG~l~~  135 (265)
                      ..+ +++||+|+++-.++-.   +          ...++..+.++++ +|+ +++
T Consensus       109 ~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~-~G~-~IL  160 (241)
T PHA03412        109 TEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIAR-QGT-FII  160 (241)
T ss_pred             ccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcC-CCE-EEe
Confidence            543 5689999998865522   1          2357888888666 555 443

>TIGR00417 speE spermidine synthase

Probab=99.17  E-value=3.2e-10  Score=96.28  Aligned_cols=100  Identities=17%  Similarity=0.242  Sum_probs=73.6

Q ss_pred             CCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC----------CCceEEecCCccchhhhhh-ccCC
Q 024647           31 TTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL----------PNIRYELTSPAMSIAELEQ-NVAA   97 (265)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~~~~d~~~-~~~~   97 (265)
                      .+.+.+||++|||+|.+++.++++.  .+++++|+++.+++.+++.          +++++..       +|... +...
T Consensus        70 ~~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~-------~D~~~~l~~~  142 (270)
T TIGR00417        70 HPNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQI-------DDGFKFLADT  142 (270)
T ss_pred             CCCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEE-------CchHHHHHhC
Confidence            3455699999999999999998775  4799999999999988862          2233333       44322 2223


Q ss_pred             CCceeEEEeccccccCC-----hhHHHHHHHHHhcCCCcEEEEEec
Q 024647           98 QSTVDLVTIAQAMHWFD-----LPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        98 ~~~~Dlv~~~~~~~~~~-----~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      .++||+|++....+...     ...+++.+.+.|+ |||++++...
T Consensus       143 ~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~-pgG~lv~~~~  187 (270)
T TIGR00417       143 ENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALN-EDGIFVAQSE  187 (270)
T ss_pred             CCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhC-CCcEEEEcCC
Confidence            56899999976544321     3578899999999 9999998643

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=99.17  E-value=2.1e-10  Score=96.17  Aligned_cols=130  Identities=20%  Similarity=0.193  Sum_probs=90.3

Q ss_pred             HHHHHHhhh-----------CCCCcHHHHHHHHh-----hCCCCCeEEEEcCCcchhHHHHHhcC-CcEEEEcCCHHHHH
Q 024647            7 KQAKQYAET-----------RPNYPEELFKFITS-----KTTNHELAWDVGTGSGQAAASLSGIF-ENVIGTETSPKQIE   69 (265)
Q Consensus         7 ~~a~~Y~~~-----------rp~y~~~l~~~l~~-----~~~~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~   69 (265)
                      ..|.+|++-           +--+-..+-+||.+     +.++.+.++|+|||.|.-.+.+-+.+ ..++|+||++.-++
T Consensus        75 ~Va~HYN~~~e~g~e~Rq~S~Ii~lRnfNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~  154 (389)
T KOG1975|consen   75 EVAEHYNERTEVGREKRQRSPIIFLRNFNNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSIN  154 (389)
T ss_pred             HHHHHHHHHHHHhHhhhccCceeehhhhhHHHHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHH
Confidence            467778761           11223344555544     34677889999999998888877665 57999999999999


Q ss_pred             HHHcC--------C----CceEEecCCccchhhhhh-ccCCCCceeEEEeccccccC-Ch-h---HHHHHHHHHhcCCCc
Q 024647           70 FATKL--------P----NIRYELTSPAMSIAELEQ-NVAAQSTVDLVTIAQAMHWF-DL-P---QFYNQVKWVLKKPNG  131 (265)
Q Consensus        70 ~a~~~--------~----~~~~~~~~~~~~~~d~~~-~~~~~~~~Dlv~~~~~~~~~-~~-~---~~l~~~~~~Lk~pgG  131 (265)
                      +|+++        .    .+.|..++...  ..+.+ ++.++.+||+|-|.+++|+. .. +   .++.++.+.|+ |||
T Consensus       155 qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~--~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~Lk-pGG  231 (389)
T KOG1975|consen  155 QARKRYRDMKNRFKKFIFTAVFIAADCFK--ERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLK-PGG  231 (389)
T ss_pred             HHHHHHHHHHhhhhcccceeEEEEeccch--hHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcC-CCc
Confidence            99862        1    24555543321  12222 33345559999999999986 32 2   48999999999 999


Q ss_pred             EEEEEecC
Q 024647          132 VIATWCYT  139 (265)
Q Consensus       132 ~l~~~~~~  139 (265)
                      .++...+.
T Consensus       232 ~FIgTiPd  239 (389)
T KOG1975|consen  232 VFIGTIPD  239 (389)
T ss_pred             EEEEecCc
Confidence            99987665

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=99.16  E-value=1.2e-10  Score=93.50  Aligned_cols=95  Identities=31%  Similarity=0.425  Sum_probs=68.9

Q ss_pred             CCCeEEEEcCCcchhHHHH-HhcCCcEEEEcCCHHHHHHHHc-C----CC-ceEEecCCccchhhhhhccCCCCceeEEE
Q 024647           33 NHELAWDVGTGSGQAAASL-SGIFENVIGTETSPKQIEFATK-L----PN-IRYELTSPAMSIAELEQNVAAQSTVDLVT  105 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l-~~~~~~v~~vD~s~~~~~~a~~-~----~~-~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~  105 (265)
                      ...+.||.|||.|..|..+ .+.+.+|..||+++..++.|++ +    .. .++.+       ..++++..+.+.||+|+
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~-------~gLQ~f~P~~~~YDlIW  127 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYC-------VGLQDFTPEEGKYDLIW  127 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEE-------S-GGG----TT-EEEEE
T ss_pred             CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEe-------cCHhhccCCCCcEeEEE
Confidence            3468999999999999976 5677889999999999999984 1    12 33344       34566654557999999


Q ss_pred             eccccccC-C--hhHHHHHHHHHhcCCCcEEEE
Q 024647          106 IAQAMHWF-D--LPQFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus       106 ~~~~~~~~-~--~~~~l~~~~~~Lk~pgG~l~~  135 (265)
                      +.+++-++ |  ...+|++|...|+ |||.+++
T Consensus       128 ~QW~lghLTD~dlv~fL~RCk~~L~-~~G~Ivv  159 (218)
T PF05891_consen  128 IQWCLGHLTDEDLVAFLKRCKQALK-PNGVIVV  159 (218)
T ss_dssp             EES-GGGS-HHHHHHHHHHHHHHEE-EEEEEEE
T ss_pred             ehHhhccCCHHHHHHHHHHHHHhCc-CCcEEEE
Confidence            99999888 4  5589999999999 9999998

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PLN02366 spermidine synthase

Probab=99.16  E-value=4e-10  Score=96.90  Aligned_cols=99  Identities=20%  Similarity=0.269  Sum_probs=74.9

Q ss_pred             CCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC----------CCceEEecCCccchhhhhhc-c-C
Q 024647           31 TTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL----------PNIRYELTSPAMSIAELEQN-V-A   96 (265)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~~~~d~~~~-~-~   96 (265)
                      .+.+.+||+||||.|.+.+.++++.  .+|+.||+++.+++.+++.          ++++++.       +|+... . .
T Consensus        89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~-------~Da~~~l~~~  161 (308)
T PLN02366         89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHI-------GDGVEFLKNA  161 (308)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEE-------ChHHHHHhhc
Confidence            4667899999999999999999874  4799999999999999872          2344444       554332 1 2


Q ss_pred             CCCceeEEEeccccccCC-----hhHHHHHHHHHhcCCCcEEEEEe
Q 024647           97 AQSTVDLVTIAQAMHWFD-----LPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        97 ~~~~~Dlv~~~~~~~~~~-----~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      ++++||+|++...-++..     ...+++.+.+.|+ |||+++...
T Consensus       162 ~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~-pgGvlv~q~  206 (308)
T PLN02366        162 PEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALR-PGGVVCTQA  206 (308)
T ss_pred             cCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcC-CCcEEEECc
Confidence            356899999976554432     2368999999999 999998743

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.16  E-value=4.8e-10  Score=94.08  Aligned_cols=111  Identities=15%  Similarity=0.181  Sum_probs=76.4

Q ss_pred             cHHHHHHHHhhCC---CCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC---CCceEEecCCccchhhh
Q 024647           20 PEELFKFITSKTT---NHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL---PNIRYELTSPAMSIAEL   91 (265)
Q Consensus        20 ~~~l~~~l~~~~~---~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~---~~~~~~~~~~~~~~~d~   91 (265)
                      ++.+++.+.....   .+.+|||+|||+|.++..+++..+  +|+++|+|+.+++.+++.   .+.++..       +|+
T Consensus        70 Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~-------~D~  142 (251)
T TIGR03704        70 TEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHE-------GDL  142 (251)
T ss_pred             HHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEE-------eec
Confidence            4556665554332   235799999999999999987654  799999999999988752   2345555       444


Q ss_pred             hhc-cC-CCCceeEEEeccccc------cC-------C--------------hhHHHHHHHHHhcCCCcEEEEEec
Q 024647           92 EQN-VA-AQSTVDLVTIAQAMH------WF-------D--------------LPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        92 ~~~-~~-~~~~~Dlv~~~~~~~------~~-------~--------------~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      .+. +. ..++||+|+++-...      ..       +              ...++..+.++|+ |||.+++...
T Consensus       143 ~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~-~gG~l~l~~~  217 (251)
T TIGR03704       143 YDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLA-PGGHLLVETS  217 (251)
T ss_pred             hhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcC-CCCEEEEEEC
Confidence            332 10 135799999986321      01       0              1367778889999 9999997654

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=99.15  E-value=1.8e-10  Score=92.94  Aligned_cols=113  Identities=19%  Similarity=0.397  Sum_probs=79.3

Q ss_pred             cHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC-----------C-----------
Q 024647           20 PEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL-----------P-----------   75 (265)
Q Consensus        20 ~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~-----------~-----------   75 (265)
                      ++..+..|....-.+..+|||||-.|.+|..+++.+.  .|+|+||++..+..|++.           .           
T Consensus        45 ~D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~  124 (288)
T KOG2899|consen   45 SDPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQF  124 (288)
T ss_pred             CChhhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccc
Confidence            4444545533334567799999999999999999875  499999999999999851           1           


Q ss_pred             -------------------CceEEecCCccchhhhhhccCCCCceeEEEeccccccC--C-----hhHHHHHHHHHhcCC
Q 024647           76 -------------------NIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF--D-----LPQFYNQVKWVLKKP  129 (265)
Q Consensus        76 -------------------~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~--~-----~~~~l~~~~~~Lk~p  129 (265)
                                         |+.|...+......|+-  ......||+|+|-..-.|+  +     ...++..+.++|. |
T Consensus       125 ~~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~-p  201 (288)
T KOG2899|consen  125 GPISQRNEADRAFTTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLH-P  201 (288)
T ss_pred             ccccccccccccccccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhC-c
Confidence                               22222222222222222  2345689999998765555  2     3479999999999 9


Q ss_pred             CcEEEE
Q 024647          130 NGVIAT  135 (265)
Q Consensus       130 gG~l~~  135 (265)
                      ||+|++
T Consensus       202 gGiLvv  207 (288)
T KOG2899|consen  202 GGILVV  207 (288)
T ss_pred             CcEEEE
Confidence            999998

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.14  E-value=2e-10  Score=94.07  Aligned_cols=124  Identities=19%  Similarity=0.226  Sum_probs=84.5

Q ss_pred             HHHHhhhCCCCcHHHHHHHHhhC-CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCc-------e--
Q 024647            9 AKQYAETRPNYPEELFKFITSKT-TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNI-------R--   78 (265)
Q Consensus         9 a~~Y~~~rp~y~~~l~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~-------~--   78 (265)
                      ...++...|  .+.+.+++.... +++.+||..|||.|.-...|++++.+|+|+|+|+..++.+.+..+.       .  
T Consensus        14 ~~~w~~~~~--~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~   91 (218)
T PF05724_consen   14 QTPWDQGEP--NPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGF   91 (218)
T ss_dssp             --TT--TTS--THHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTE
T ss_pred             CCCCCCCCC--CHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccce
Confidence            334555555  467888877633 4556899999999999999999999999999999999987321110       0  


Q ss_pred             --EEecCCccchhhhhhccCCC-CceeEEEeccccccCC---hhHHHHHHHHHhcCCCcEEEE
Q 024647           79 --YELTSPAMSIAELEQNVAAQ-STVDLVTIAQAMHWFD---LPQFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus        79 --~~~~~~~~~~~d~~~~~~~~-~~~Dlv~~~~~~~~~~---~~~~l~~~~~~Lk~pgG~l~~  135 (265)
                        .....+++..+|+-.++... ++||+|+-..+++-++   +.+..+.+.++|+ |||.+++
T Consensus        92 ~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~-p~g~~lL  153 (218)
T PF05724_consen   92 KRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLK-PGGRGLL  153 (218)
T ss_dssp             EEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEE-EEEEEEE
T ss_pred             eeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhC-CCCcEEE
Confidence              01112233336776654332 4799999888777774   4579999999999 9999433

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.12  E-value=2e-10  Score=105.41  Aligned_cols=95  Identities=28%  Similarity=0.269  Sum_probs=68.4

Q ss_pred             CCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCCCCceeEE
Q 024647           34 HELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAAQSTVDLV  104 (265)
Q Consensus        34 ~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv  104 (265)
                      +.+|||+|||+|.++..++...  .+|+++|+|+.+++.|++.       .++.+..       +|+... .+.++||+|
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~-------~D~~~~-~~~~~fDlI  210 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIH-------SNWFEN-IEKQKFDFI  210 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeee-------cchhhh-CcCCCccEE
Confidence            4589999999999999998765  4799999999999998852       1344555       454322 345689999


Q ss_pred             Eecccccc--------------------C-C------hhHHHHHHHHHhcCCCcEEEEEe
Q 024647          105 TIAQAMHW--------------------F-D------LPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       105 ~~~~~~~~--------------------~-~------~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      +++-....                    + .      ...+++++.++|+ |||.+++..
T Consensus       211 vsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~-~gG~l~lEi  269 (506)
T PRK01544        211 VSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLK-PNGKIILEI  269 (506)
T ss_pred             EECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhcc-CCCEEEEEE
Confidence            99652111                    1 0      1246778889999 999998743

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=99.12  E-value=2.6e-10  Score=91.92  Aligned_cols=100  Identities=26%  Similarity=0.343  Sum_probs=74.5

Q ss_pred             CeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhccCCCCceeEEEe
Q 024647           35 ELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQNVAAQSTVDLVTI  106 (265)
Q Consensus        35 ~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~  106 (265)
                      ..+||||||.|.+...+|...+  .++|+|++...+..+.+      ++|+.++.+++...   +..+ ++++++|.|+.
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~---l~~~-~~~~~v~~i~i   94 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDAREL---LRRL-FPPGSVDRIYI   94 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTH---HHHH-STTTSEEEEEE
T ss_pred             CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHH---Hhhc-ccCCchheEEE
Confidence            4899999999999999999887  49999999999987653      58999999776322   2223 46789999999


Q ss_pred             ccccccCC---------hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          107 AQAMHWFD---------LPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       107 ~~~~~~~~---------~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      ++.-.|..         ...+++.+.++|+ |||.|.+.+-.
T Consensus        95 ~FPDPWpK~rH~krRl~~~~fl~~~~~~L~-~gG~l~~~TD~  135 (195)
T PF02390_consen   95 NFPDPWPKKRHHKRRLVNPEFLELLARVLK-PGGELYFATDV  135 (195)
T ss_dssp             ES-----SGGGGGGSTTSHHHHHHHHHHEE-EEEEEEEEES-
T ss_pred             eCCCCCcccchhhhhcCCchHHHHHHHHcC-CCCEEEEEeCC
Confidence            99888873         2379999999999 99999886644

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=8.8e-10  Score=88.25  Aligned_cols=94  Identities=20%  Similarity=0.221  Sum_probs=73.3

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhccCCCCceeEEE
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQNVAAQSTVDLVT  105 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~  105 (265)
                      .++++|||||||+|..+.-|++...+|+.+|..+...+.|++      +.|+...+       +|...-..+..+||.|+
T Consensus        71 ~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~-------gDG~~G~~~~aPyD~I~  143 (209)
T COG2518          71 KPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRH-------GDGSKGWPEEAPYDRII  143 (209)
T ss_pred             CCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEE-------CCcccCCCCCCCcCEEE
Confidence            577899999999999999999999999999999999999986      35777777       55444333558999999


Q ss_pred             eccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          106 IAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       106 ~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      +..+...+ |    +.+.+-|+ +||++++-..
T Consensus       144 Vtaaa~~v-P----~~Ll~QL~-~gGrlv~PvG  170 (209)
T COG2518         144 VTAAAPEV-P----EALLDQLK-PGGRLVIPVG  170 (209)
T ss_pred             EeeccCCC-C----HHHHHhcc-cCCEEEEEEc
Confidence            87664432 2    23455689 9999987443

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.10  E-value=3.4e-10  Score=91.97  Aligned_cols=104  Identities=19%  Similarity=0.287  Sum_probs=72.7

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCC---cEEEEcCCHHHHHHHHc------CCCceEEecCCccchh
Q 024647           21 EELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFE---NVIGTETSPKQIEFATK------LPNIRYELTSPAMSIA   89 (265)
Q Consensus        21 ~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~   89 (265)
                      +.+...+...+  +++++|||||||+|..+..++....   .|+++|+.+..++.|++      ..|+.+..       +
T Consensus        58 P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~-------g  130 (209)
T PF01135_consen   58 PSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVV-------G  130 (209)
T ss_dssp             HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEE-------S
T ss_pred             HHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEE-------c
Confidence            34444444443  6789999999999999999998743   58999999999998875      35788888       4


Q ss_pred             hhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647           90 ELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        90 d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      |...-.....+||.|++..+..     ..-..+.+.|+ +||++++-.
T Consensus       131 dg~~g~~~~apfD~I~v~~a~~-----~ip~~l~~qL~-~gGrLV~pi  172 (209)
T PF01135_consen  131 DGSEGWPEEAPFDRIIVTAAVP-----EIPEALLEQLK-PGGRLVAPI  172 (209)
T ss_dssp             -GGGTTGGG-SEEEEEESSBBS-----S--HHHHHTEE-EEEEEEEEE
T ss_pred             chhhccccCCCcCEEEEeeccc-----hHHHHHHHhcC-CCcEEEEEE
Confidence            4433323556899999987654     22345677799 999999744

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.10  E-value=2.7e-10  Score=102.80  Aligned_cols=100  Identities=13%  Similarity=0.218  Sum_probs=73.8

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC-----CCceEEecCCccchhhhhhcc--CCCCcee
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL-----PNIRYELTSPAMSIAELEQNV--AAQSTVD  102 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~d~~~~~--~~~~~~D  102 (265)
                      .++.+|||+|||+|..+..+++...  +|+++|+|+.+++.+++.     .++.+..       +|+...+  .+.++||
T Consensus       243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~-------~D~~~~~~~~~~~~fD  315 (427)
T PRK10901        243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIV-------GDARDPAQWWDGQPFD  315 (427)
T ss_pred             CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEE-------cCcccchhhcccCCCC
Confidence            4678999999999999999998764  799999999999988752     1244555       5554432  2356899


Q ss_pred             EEEeccc------------cccC-Ch----------hHHHHHHHHHhcCCCcEEEEEecC
Q 024647          103 LVTIAQA------------MHWF-DL----------PQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       103 lv~~~~~------------~~~~-~~----------~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      .|+++-.            ++|. .+          .+++..+.++|+ |||.+++.+..
T Consensus       316 ~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lk-pGG~lvystcs  374 (427)
T PRK10901        316 RILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLK-PGGTLLYATCS  374 (427)
T ss_pred             EEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEeCC
Confidence            9996441            1233 21          258999999999 99999987653

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.10  E-value=2.2e-09  Score=86.66  Aligned_cols=117  Identities=13%  Similarity=-0.021  Sum_probs=77.7

Q ss_pred             hCCCCcHHHHHHHHhhC---CCCCeEEEEcCCcchhHHHHHhc-CCcEEEEcCCHHHHHHHHcC------CCceEEecCC
Q 024647           15 TRPNYPEELFKFITSKT---TNHELAWDVGTGSGQAAASLSGI-FENVIGTETSPKQIEFATKL------PNIRYELTSP   84 (265)
Q Consensus        15 ~rp~y~~~l~~~l~~~~---~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~   84 (265)
                      .||. .+.+.+.+.+..   .++.+|||+|||+|.++..++.+ ..+|+++|+++.+++.+++.      .++.+..   
T Consensus        33 ~Rp~-~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~---  108 (199)
T PRK10909         33 LRPT-TDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVN---  108 (199)
T ss_pred             cCcC-CHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEE---
Confidence            4776 566544444432   34578999999999999975544 45899999999999987752      3455555   


Q ss_pred             ccchhhhhhc-cCCCCceeEEEeccccccCChhHHHHHHHH--HhcCCCcEEEEEecCC
Q 024647           85 AMSIAELEQN-VAAQSTVDLVTIAQAMHWFDLPQFYNQVKW--VLKKPNGVIATWCYTV  140 (265)
Q Consensus        85 ~~~~~d~~~~-~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~--~Lk~pgG~l~~~~~~~  140 (265)
                          +|+... +...++||+|+++-..+.--...+++.+..  .|+ |+|.+++.+...
T Consensus       109 ----~D~~~~l~~~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~-~~~iv~ve~~~~  162 (199)
T PRK10909        109 ----TNALSFLAQPGTPHNVVFVDPPFRKGLLEETINLLEDNGWLA-DEALIYVESEVE  162 (199)
T ss_pred             ----chHHHHHhhcCCCceEEEECCCCCCChHHHHHHHHHHCCCcC-CCcEEEEEecCC
Confidence                555442 222457999999876443222344554444  368 899888876653

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=99.09  E-value=4.4e-10  Score=90.82  Aligned_cols=104  Identities=20%  Similarity=0.269  Sum_probs=77.5

Q ss_pred             CeEEEEcCCcchhHHHHHhcCCc----EEEEcCCHHHHHHHHcCCC-----ceEEecCCccchhhhhhccCCCCceeEEE
Q 024647           35 ELAWDVGTGSGQAAASLSGIFEN----VIGTETSPKQIEFATKLPN-----IRYELTSPAMSIAELEQNVAAQSTVDLVT  105 (265)
Q Consensus        35 ~~vlDvGcG~G~~~~~l~~~~~~----v~~vD~s~~~~~~a~~~~~-----~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~  105 (265)
                      .+|||||||.|.....+.+-.++    |.++|.||..++..++...     +.....+.   ..+-..-+...+++|.|+
T Consensus        73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dl---t~~~~~~~~~~~svD~it  149 (264)
T KOG2361|consen   73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDL---TSPSLKEPPEEGSVDIIT  149 (264)
T ss_pred             hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceec---cchhccCCCCcCccceEE
Confidence            37999999999999999987654    9999999999999886321     11111111   011112345678999999


Q ss_pred             eccccccCChh---HHHHHHHHHhcCCCcEEEEEecCCCC
Q 024647          106 IAQAMHWFDLP---QFYNQVKWVLKKPNGVIATWCYTVPE  142 (265)
Q Consensus       106 ~~~~~~~~~~~---~~l~~~~~~Lk~pgG~l~~~~~~~~~  142 (265)
                      +.+++.-+.++   .+++++.++|| |||.+++-+|+...
T Consensus       150 ~IFvLSAi~pek~~~a~~nl~~llK-PGG~llfrDYg~~D  188 (264)
T KOG2361|consen  150 LIFVLSAIHPEKMQSVIKNLRTLLK-PGGSLLFRDYGRYD  188 (264)
T ss_pred             EEEEEeccChHHHHHHHHHHHHHhC-CCcEEEEeecccch
Confidence            99988777554   69999999999 99999998887543

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.08  E-value=6.5e-10  Score=86.05  Aligned_cols=123  Identities=20%  Similarity=0.325  Sum_probs=84.0

Q ss_pred             HHHHHHHHhhCC------CCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHc------CCC-ceEEecCCc
Q 024647           21 EELFKFITSKTT------NHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATK------LPN-IRYELTSPA   85 (265)
Q Consensus        21 ~~l~~~l~~~~~------~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~------~~~-~~~~~~~~~   85 (265)
                      ..+++|+.....      ...+|||+|||.|.+...|++.+-  +++|||.|+..++.|+.      .+| ++|.+    
T Consensus        49 ~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q----  124 (227)
T KOG1271|consen   49 ERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQ----  124 (227)
T ss_pred             HHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEE----
Confidence            456677665432      234899999999999999998753  49999999999998764      244 88888    


Q ss_pred             cchhhhhhccCCCCceeEEEeccccccC----C-----hhHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHhhcc
Q 024647           86 MSIAELEQNVAAQSTVDLVTIAQAMHWF----D-----LPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQP  153 (265)
Q Consensus        86 ~~~~d~~~~~~~~~~~Dlv~~~~~~~~~----~-----~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~~~  153 (265)
                         .|+-+-....+.||+|.--..+.-+    |     +...+..+.++|+ |||+|+|...+-.  ..++.+.+..
T Consensus       125 ---~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~-~~gifvItSCN~T--~dELv~~f~~  195 (227)
T KOG1271|consen  125 ---LDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLS-PGGIFVITSCNFT--KDELVEEFEN  195 (227)
T ss_pred             ---eeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccC-CCcEEEEEecCcc--HHHHHHHHhc
Confidence               4544433455678888765433221    1     2346888999999 9999998655422  2444444443

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.08  E-value=9.2e-10  Score=99.58  Aligned_cols=100  Identities=14%  Similarity=0.257  Sum_probs=74.7

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC------CCceEEecCCccchhhhhhcc----CCC
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAELEQNV----AAQ   98 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d~~~~~----~~~   98 (265)
                      .++.+|||+|||+|..|..+++..   .+|+++|+++.+++.+++.      .++.+..       +|+..++    ...
T Consensus       251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~-------~D~~~~~~~~~~~~  323 (434)
T PRK14901        251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILA-------ADSRNLLELKPQWR  323 (434)
T ss_pred             CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEe-------CChhhccccccccc
Confidence            456899999999999999998864   4799999999999988652      3566666       5555543    335


Q ss_pred             CceeEEEecc------ccc------cC-C----------hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           99 STVDLVTIAQ------AMH------WF-D----------LPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        99 ~~~Dlv~~~~------~~~------~~-~----------~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      ++||.|++.-      .++      |. .          ...++.++.++|| |||+|+..+..
T Consensus       324 ~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk-pgG~lvystcs  386 (434)
T PRK14901        324 GYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLK-PGGTLVYATCT  386 (434)
T ss_pred             ccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEeCC
Confidence            6899999742      222      21 1          2467999999999 99999877654

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=99.06  E-value=2.5e-09  Score=87.73  Aligned_cols=127  Identities=19%  Similarity=0.242  Sum_probs=91.6

Q ss_pred             HHHHHhhhCCCCcHHHHHH---HHhhCC-C-CCeEEEEcCCcchhHHHHHhcCCc--EEEEcCCHHHHHHHHc------C
Q 024647            8 QAKQYAETRPNYPEELFKF---ITSKTT-N-HELAWDVGTGSGQAAASLSGIFEN--VIGTETSPKQIEFATK------L   74 (265)
Q Consensus         8 ~a~~Y~~~rp~y~~~l~~~---l~~~~~-~-~~~vlDvGcG~G~~~~~l~~~~~~--v~~vD~s~~~~~~a~~------~   74 (265)
                      +...++..-|.|+......   ..+... + ...+||||||.|.+...+|++.++  ++|||+....+..+.+      +
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l   97 (227)
T COG0220          18 QKNALEDNWPRLGLDPQEEPGDWSALFGNNNAPIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL   97 (227)
T ss_pred             HHHHHHhcccccCCChhhccchHHHHhCCCCCcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCC
Confidence            4445555555554443322   222222 2 257999999999999999999884  9999999999887653      3


Q ss_pred             CCceEEecCCccchhhhhhccCCCCceeEEEeccccccC-Ch--------hHHHHHHHHHhcCCCcEEEEEecC
Q 024647           75 PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DL--------PQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        75 ~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~--------~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +|+...+.++    ..+.+.-.++++.|-|..++.-.|. ..        +.+++.+.++|+ |||.|.+.+-.
T Consensus        98 ~Nlri~~~DA----~~~l~~~~~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk-~gG~l~~aTD~  166 (227)
T COG0220          98 KNLRLLCGDA----VEVLDYLIPDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLK-PGGVLHFATDN  166 (227)
T ss_pred             CcEEEEcCCH----HHHHHhcCCCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHcc-CCCEEEEEecC
Confidence            4888888665    3333333566799999999988888 32        479999999999 99999986544

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.05  E-value=2.3e-09  Score=90.70  Aligned_cols=100  Identities=16%  Similarity=0.222  Sum_probs=73.3

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC------CCceEEecCCccchhhhhhccCCCCcee
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAELEQNVAAQSTVD  102 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d~~~~~~~~~~~D  102 (265)
                      .++.+|||+|||+|..+..+++..   ..|+++|+++.+++.+++.      .++.+..       .|...++...++||
T Consensus        70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~-------~D~~~~~~~~~~fD  142 (264)
T TIGR00446        70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTN-------FDGRVFGAAVPKFD  142 (264)
T ss_pred             CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEec-------CCHHHhhhhccCCC
Confidence            466889999999999999998864   4699999999999988652      3455554       55555544456799


Q ss_pred             EEEeccc------c--------ccCC---------hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          103 LVTIAQA------M--------HWFD---------LPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       103 lv~~~~~------~--------~~~~---------~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      .|++.-.      +        .|..         ...+++.+.++|| |||+|+..+..
T Consensus       143 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lk-pgG~lvYstcs  201 (264)
T TIGR00446       143 AILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALK-PGGVLVYSTCS  201 (264)
T ss_pred             EEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEeCC
Confidence            9997431      1        1110         1248899999999 99999877664

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.05  E-value=2e-09  Score=97.72  Aligned_cols=122  Identities=14%  Similarity=0.167  Sum_probs=81.6

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhh
Q 024647           21 EELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELE   92 (265)
Q Consensus        21 ~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~   92 (265)
                      +.+++.+.+..  .++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.|++      ..++.+..+++.   ..+.
T Consensus       283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~---~~l~  359 (443)
T PRK13168        283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLE---EDFT  359 (443)
T ss_pred             HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChH---Hhhh
Confidence            45556655544  356799999999999999999999999999999999998875      245777774431   0111


Q ss_pred             hccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHh
Q 024647           93 QNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAV  150 (265)
Q Consensus        93 ~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~  150 (265)
                      ..++.+++||+|+++-.-  ......++.+.+ ++ |++.+++.+ ++.++...+..+
T Consensus       360 ~~~~~~~~fD~Vi~dPPr--~g~~~~~~~l~~-~~-~~~ivyvSC-np~tlaRDl~~L  412 (443)
T PRK13168        360 DQPWALGGFDKVLLDPPR--AGAAEVMQALAK-LG-PKRIVYVSC-NPATLARDAGVL  412 (443)
T ss_pred             hhhhhcCCCCEEEECcCC--cChHHHHHHHHh-cC-CCeEEEEEe-ChHHhhccHHHH
Confidence            222345679999986421  122355555555 68 888887766 444554555544

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.05  E-value=1.9e-09  Score=97.91  Aligned_cols=99  Identities=12%  Similarity=0.238  Sum_probs=74.0

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC------CCceEEecCCccchhhhhhccCCCCcee
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAELEQNVAAQSTVD  102 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d~~~~~~~~~~~D  102 (265)
                      .++.+|||+|||+|..+..+++..   .+|+++|+|+.|++.+++.      .++.+..       +|+..++ ++++||
T Consensus       249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~-------~Da~~~~-~~~~fD  320 (445)
T PRK14904        249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIE-------GDARSFS-PEEQPD  320 (445)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEe-------Ccccccc-cCCCCC
Confidence            356799999999999999988753   4799999999999988752      3455555       5655554 556899


Q ss_pred             EEEecc----c--------cccC-Ch----------hHHHHHHHHHhcCCCcEEEEEecC
Q 024647          103 LVTIAQ----A--------MHWF-DL----------PQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       103 lv~~~~----~--------~~~~-~~----------~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +|++.-    .        ++|. ++          ..++.++.++|+ |||++++.+..
T Consensus       321 ~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lk-pgG~lvystcs  379 (445)
T PRK14904        321 AILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLK-PGGVLVYATCS  379 (445)
T ss_pred             EEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEEeCC
Confidence            999631    1        1232 22          258999999999 99999987765

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.04  E-value=2.3e-09  Score=93.10  Aligned_cols=106  Identities=15%  Similarity=0.179  Sum_probs=71.1

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC------CCceEEecCCccchhhhhhccC-CCCceeEEE
Q 024647           33 NHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAELEQNVA-AQSTVDLVT  105 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d~~~~~~-~~~~~Dlv~  105 (265)
                      ++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|++.      .++++..       +|+.++.. ..+.||+|+
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~-------~D~~~~~~~~~~~~D~Vv  245 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQA-------LDSTQFATAQGEVPDLVL  245 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEE-------cCHHHHHHhcCCCCeEEE
Confidence            457899999999999999999988999999999999988752      3567777       55555432 235799999


Q ss_pred             eccccccCChhHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHH
Q 024647          106 IAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDA  149 (265)
Q Consensus       106 ~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~  149 (265)
                      ++-.  .-....-+.++...++ |++++++.+ ++.++...+..
T Consensus       246 ~dPP--r~G~~~~~~~~l~~~~-~~~ivyvsc-~p~t~~rd~~~  285 (315)
T PRK03522        246 VNPP--RRGIGKELCDYLSQMA-PRFILYSSC-NAQTMAKDLAH  285 (315)
T ss_pred             ECCC--CCCccHHHHHHHHHcC-CCeEEEEEC-CcccchhHHhh
Confidence            8743  1111122333344467 776666544 43444444443

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.03  E-value=1.9e-09  Score=97.26  Aligned_cols=100  Identities=15%  Similarity=0.213  Sum_probs=73.9

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC------CCceEEecCCccchhhhhhcc-CCCCce
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAELEQNV-AAQSTV  101 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d~~~~~-~~~~~~  101 (265)
                      .++.+|||+|||+|..|..+++..   .+|+++|+|+.+++.+++.      .++.+..       +|+..++ ..+++|
T Consensus       236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~-------~Da~~l~~~~~~~f  308 (431)
T PRK14903        236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKI-------ADAERLTEYVQDTF  308 (431)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEE-------CchhhhhhhhhccC
Confidence            456789999999999999998864   5799999999999988752      3455555       5555443 235689


Q ss_pred             eEEEeccc---cccC--C------------------hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          102 DLVTIAQA---MHWF--D------------------LPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       102 Dlv~~~~~---~~~~--~------------------~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      |.|++.-.   +..+  +                  ..+.+.++.+.|+ |||.++..+..
T Consensus       309 D~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lk-pGG~LvYsTCs  368 (431)
T PRK14903        309 DRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLE-KGGILLYSTCT  368 (431)
T ss_pred             CEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEECC
Confidence            99997431   1111  1                  1356889999999 99999987765

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=99.03  E-value=1.5e-09  Score=86.48  Aligned_cols=128  Identities=15%  Similarity=0.193  Sum_probs=72.8

Q ss_pred             HHHhhhCCCCcHHHHHHHHhhC---CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCcc
Q 024647           10 KQYAETRPNYPEELFKFITSKT---TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAM   86 (265)
Q Consensus        10 ~~Y~~~rp~y~~~l~~~l~~~~---~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~   86 (265)
                      +.|.+.....|..-++.+...+   ++...|-|+|||.+.++..+. ...+|...|+.+.         |-....     
T Consensus        46 ~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~-~~~~V~SfDLva~---------n~~Vta-----  110 (219)
T PF05148_consen   46 EGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVP-NKHKVHSFDLVAP---------NPRVTA-----  110 (219)
T ss_dssp             HHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH---S---EEEEESS-S---------STTEEE-----
T ss_pred             HHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcc-cCceEEEeeccCC---------CCCEEE-----
Confidence            3444443333444444444332   455689999999999986653 3356888888553         222334     


Q ss_pred             chhhhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecCCC-CCChHHHHhhcccc
Q 024647           87 SIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTVP-EVNVSVDAVFQPFY  155 (265)
Q Consensus        87 ~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~~~-~~~~~~~~~~~~~~  155 (265)
                        .|+..+|++++++|++++..++.=-|...++.|+.|+|| |||.|.+...... .-...+.+....+.
T Consensus       111 --cdia~vPL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK-~~G~L~IAEV~SRf~~~~~F~~~~~~~G  177 (219)
T PF05148_consen  111 --CDIANVPLEDESVDVAVFCLSLMGTNWPDFIREANRVLK-PGGILKIAEVKSRFENVKQFIKALKKLG  177 (219)
T ss_dssp             --S-TTS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEE-EEEEEEEEEEGGG-S-HHHHHHHHHCTT
T ss_pred             --ecCccCcCCCCceeEEEEEhhhhCCCcHHHHHHHHheec-cCcEEEEEEecccCcCHHHHHHHHHHCC
Confidence              678899999999999999999887899999999999999 9999998665421 11244444444443

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.01  E-value=6.3e-09  Score=88.51  Aligned_cols=123  Identities=21%  Similarity=0.243  Sum_probs=80.6

Q ss_pred             cHHHHHHHHhhCCCCC-eEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC---CC---ceEEecCCccchhh
Q 024647           20 PEELFKFITSKTTNHE-LAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL---PN---IRYELTSPAMSIAE   90 (265)
Q Consensus        20 ~~~l~~~l~~~~~~~~-~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~---~~---~~~~~~~~~~~~~d   90 (265)
                      ...+++.+........ +|||+|||+|..+..++..++  +|+|+|+|+..++.|++.   .+   +.+..       +|
T Consensus        96 Te~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~-------~d  168 (280)
T COG2890          96 TELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQ-------SD  168 (280)
T ss_pred             hHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEe-------ee
Confidence            4556666542332222 799999999999999999987  799999999999998752   22   22232       22


Q ss_pred             hhhccCCCCceeEEEeccc-ccc----C-------Ch--------------hHHHHHHHHHhcCCCcEEEEEecCCCCCC
Q 024647           91 LEQNVAAQSTVDLVTIAQA-MHW----F-------DL--------------PQFYNQVKWVLKKPNGVIATWCYTVPEVN  144 (265)
Q Consensus        91 ~~~~~~~~~~~Dlv~~~~~-~~~----~-------~~--------------~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~  144 (265)
                      +-  ..-.++||+|++|-. +.-    .       +|              ..++.++.+.|+ |||.+++......  .
T Consensus       169 lf--~~~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~-~~g~l~le~g~~q--~  243 (280)
T COG2890         169 LF--EPLRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILK-PGGVLILEIGLTQ--G  243 (280)
T ss_pred             cc--cccCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcC-CCcEEEEEECCCc--H
Confidence            21  112348999999862 111    0       11              257888999999 9999988554322  3


Q ss_pred             hHHHHhhccc
Q 024647          145 VSVDAVFQPF  154 (265)
Q Consensus       145 ~~~~~~~~~~  154 (265)
                      +.+.+++.+.
T Consensus       244 ~~v~~~~~~~  253 (280)
T COG2890         244 EAVKALFEDT  253 (280)
T ss_pred             HHHHHHHHhc
Confidence            5555555443

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.00  E-value=2.2e-09  Score=89.67  Aligned_cols=96  Identities=19%  Similarity=0.268  Sum_probs=76.0

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA  109 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~  109 (265)
                      .+..+|||||+|+|.++..++++++  +++..|. |.+++.+++..++++..       +|+. -++|.  +|+++..+.
T Consensus        99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~~~rv~~~~-------gd~f-~~~P~--~D~~~l~~v  167 (241)
T PF00891_consen   99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKEADRVEFVP-------GDFF-DPLPV--ADVYLLRHV  167 (241)
T ss_dssp             TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHHTTTEEEEE-------S-TT-TCCSS--ESEEEEESS
T ss_pred             cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccccccccccc-------ccHH-hhhcc--ccceeeehh
Confidence            3456899999999999999999987  5888999 88888887767888888       5654 33444  999999999


Q ss_pred             cccCCh---hHHHHHHHHHhcCCC--cEEEEEecC
Q 024647          110 MHWFDL---PQFYNQVKWVLKKPN--GVIATWCYT  139 (265)
Q Consensus       110 ~~~~~~---~~~l~~~~~~Lk~pg--G~l~~~~~~  139 (265)
                      +|..+.   ...|+++++.|+ ||  |+|++....
T Consensus       168 Lh~~~d~~~~~iL~~~~~al~-pg~~g~llI~e~~  201 (241)
T PF00891_consen  168 LHDWSDEDCVKILRNAAAALK-PGKDGRLLIIEMV  201 (241)
T ss_dssp             GGGS-HHHHHHHHHHHHHHSE-ECTTEEEEEEEEE
T ss_pred             hhhcchHHHHHHHHHHHHHhC-CCCCCeEEEEeec
Confidence            997733   368999999999 99  999886654

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.99  E-value=3.3e-09  Score=86.85  Aligned_cols=115  Identities=23%  Similarity=0.267  Sum_probs=88.5

Q ss_pred             hCCCCcHHHHHHHHhh-CCCCCeEEEEcCCcchhHHHHHhc-C--CcEEEEcCCHHHHHHHHcC------CC-ceEEecC
Q 024647           15 TRPNYPEELFKFITSK-TTNHELAWDVGTGSGQAAASLSGI-F--ENVIGTETSPKQIEFATKL------PN-IRYELTS   83 (265)
Q Consensus        15 ~rp~y~~~l~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~-~--~~v~~vD~s~~~~~~a~~~------~~-~~~~~~~   83 (265)
                      .++-||++....+... +.++++|+|.|.|+|.++..|+.. +  .+|+..|+.+...+.|++.      .+ +.+..  
T Consensus        75 tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~--  152 (256)
T COG2519          75 TQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKL--  152 (256)
T ss_pred             CceecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEe--
Confidence            4567887777555443 368899999999999999999974 3  4799999999999999862      22 44444  


Q ss_pred             CccchhhhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecCCCC
Q 024647           84 PAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTVPE  142 (265)
Q Consensus        84 ~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~  142 (265)
                           +|+.+...+ +.||.|+...    .+|-.++..+.++|+ |||.++++.+.-.+
T Consensus       153 -----~Dv~~~~~~-~~vDav~LDm----p~PW~~le~~~~~Lk-pgg~~~~y~P~veQ  200 (256)
T COG2519         153 -----GDVREGIDE-EDVDAVFLDL----PDPWNVLEHVSDALK-PGGVVVVYSPTVEQ  200 (256)
T ss_pred             -----ccccccccc-cccCEEEEcC----CChHHHHHHHHHHhC-CCcEEEEEcCCHHH
Confidence                 666555434 3899999872    277799999999999 99999998876433

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.99  E-value=2.9e-09  Score=85.16  Aligned_cols=136  Identities=15%  Similarity=0.256  Sum_probs=91.0

Q ss_pred             HHHHHHHHhhCCCCCe-EEEEcCCcchhHHHHHhcCCc--EEEEcCCHHHHHHHHc------CCCceEEecCCccchhhh
Q 024647           21 EELFKFITSKTTNHEL-AWDVGTGSGQAAASLSGIFEN--VIGTETSPKQIEFATK------LPNIRYELTSPAMSIAEL   91 (265)
Q Consensus        21 ~~l~~~l~~~~~~~~~-vlDvGcG~G~~~~~l~~~~~~--v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~   91 (265)
                      +-+.+.|....++... |||||||||+-+..+++++++  ..-.|+++..+...+.      .+|+.   .+..   -|+
T Consensus        12 ~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~---~P~~---lDv   85 (204)
T PF06080_consen   12 DPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVR---PPLA---LDV   85 (204)
T ss_pred             hHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccC---CCeE---eec
Confidence            3456677777776665 999999999999999999986  4577888887543221      23321   1221   122


Q ss_pred             hh--ccC------CCCceeEEEeccccccCCh---hHHHHHHHHHhcCCCcEEEEEecC--CCCCChHHHHhhcccccCC
Q 024647           92 EQ--NVA------AQSTVDLVTIAQAMHWFDL---PQFYNQVKWVLKKPNGVIATWCYT--VPEVNVSVDAVFQPFYTVD  158 (265)
Q Consensus        92 ~~--~~~------~~~~~Dlv~~~~~~~~~~~---~~~l~~~~~~Lk~pgG~l~~~~~~--~~~~~~~~~~~~~~~~~~~  158 (265)
                      ..  ++.      ..++||+|++.+.+|....   +.+++.+.++|+ +||.|+++.+.  +..+..+-++.|..... .
T Consensus        86 ~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~-~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr-~  163 (204)
T PF06080_consen   86 SAPPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLK-PGGLLFLYGPFNRDGKFTSESNAAFDASLR-S  163 (204)
T ss_pred             CCCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCC-CCCEEEEeCCcccCCEeCCcHHHHHHHHHh-c
Confidence            22  222      3568999999999997754   468999999999 99999998874  33334444455544443 3


Q ss_pred             CCCCcc
Q 024647          159 SDPFWE  164 (265)
Q Consensus       159 ~~~~~~  164 (265)
                      -.|.|.
T Consensus       164 rdp~~G  169 (204)
T PF06080_consen  164 RDPEWG  169 (204)
T ss_pred             CCCCcC
Confidence            346665

The function of this family is unknown.

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.97  E-value=5.5e-09  Score=86.74  Aligned_cols=107  Identities=13%  Similarity=0.202  Sum_probs=73.3

Q ss_pred             HHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhh
Q 024647           23 LFKFITSKTTNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELE   92 (265)
Q Consensus        23 l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~   92 (265)
                      ++..+... .++.+|||+|||+|..+..++...   .+|+++|+++.+++.|++.       .++++..+++.-   -+.
T Consensus        59 ~L~~l~~~-~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~---~L~  134 (234)
T PLN02781         59 FLSMLVKI-MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALS---ALD  134 (234)
T ss_pred             HHHHHHHH-hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHH---HHH
Confidence            33333333 346789999999999999888753   4799999999999988752       346666644310   011


Q ss_pred             hcc--CCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEE
Q 024647           93 QNV--AAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATW  136 (265)
Q Consensus        93 ~~~--~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~  136 (265)
                      .+.  .+.++||+|++...-  -.....+..+.++|+ |||.+++-
T Consensus       135 ~l~~~~~~~~fD~VfiDa~k--~~y~~~~~~~~~ll~-~GG~ii~d  177 (234)
T PLN02781        135 QLLNNDPKPEFDFAFVDADK--PNYVHFHEQLLKLVK-VGGIIAFD  177 (234)
T ss_pred             HHHhCCCCCCCCEEEECCCH--HHHHHHHHHHHHhcC-CCeEEEEE
Confidence            111  124689999986321  123468899999999 99998873

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=98.97  E-value=1e-08  Score=91.29  Aligned_cols=112  Identities=11%  Similarity=0.081  Sum_probs=75.2

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC--------CCceEEecCCccchhhhhhc----cCCC
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL--------PNIRYELTSPAMSIAELEQN----VAAQ   98 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~d~~~~----~~~~   98 (265)
                      .++.+|||+|||+|.++..++..++ +|+++|+|+.+++.|++.        .+++++.       +|+.++    ....
T Consensus       219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~-------~D~~~~l~~~~~~~  291 (396)
T PRK15128        219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVR-------DDVFKLLRTYRDRG  291 (396)
T ss_pred             cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEE-------ccHHHHHHHHHhcC
Confidence            4567899999999999988766655 799999999999988752        1455666       444332    1235


Q ss_pred             CceeEEEeccccccC----------ChhHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHhh
Q 024647           99 STVDLVTIAQAMHWF----------DLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVF  151 (265)
Q Consensus        99 ~~~Dlv~~~~~~~~~----------~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~  151 (265)
                      ++||+|+++-..---          +...++..+.++|+ |||.|+........-.+.+.++.
T Consensus       292 ~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk-~gG~lv~~scs~~~~~~~f~~~v  353 (396)
T PRK15128        292 EKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLN-PGGILLTFSCSGLMTSDLFQKII  353 (396)
T ss_pred             CCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcC-CCeEEEEEeCCCcCCHHHHHHHH
Confidence            689999998532111          12345567789999 99999875544222224444443

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.97  E-value=2.3e-09  Score=91.11  Aligned_cols=83  Identities=12%  Similarity=0.079  Sum_probs=64.0

Q ss_pred             cHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC---CCceEEecCCccchhhhhhc
Q 024647           20 PEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL---PNIRYELTSPAMSIAELEQN   94 (265)
Q Consensus        20 ~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---~~~~~~~~~~~~~~~d~~~~   94 (265)
                      ++.+++.+....  .++.+|||+|||+|.+|..+++++.+|+|+|+++.|++.+++.   +++++..       +|+.++
T Consensus        27 ~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~~~v~~i~-------~D~~~~   99 (272)
T PRK00274         27 DENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAEDNLTIIE-------GDALKV   99 (272)
T ss_pred             CHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhccCceEEEE-------ChhhcC
Confidence            556777766654  4667899999999999999999999999999999999998753   3566666       677776


Q ss_pred             cCCCCceeEEEeccc
Q 024647           95 VAAQSTVDLVTIAQA  109 (265)
Q Consensus        95 ~~~~~~~Dlv~~~~~  109 (265)
                      ++++-..|.|+++..
T Consensus       100 ~~~~~~~~~vv~NlP  114 (272)
T PRK00274        100 DLSELQPLKVVANLP  114 (272)
T ss_pred             CHHHcCcceEEEeCC
Confidence            544322588888754

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.96  E-value=2.1e-09  Score=97.02  Aligned_cols=104  Identities=10%  Similarity=0.176  Sum_probs=72.0

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC---CCceEEecCCccchhhhhhccC--CCCceeEE
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL---PNIRYELTSPAMSIAELEQNVA--AQSTVDLV  104 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~---~~~~~~~~~~~~~~~d~~~~~~--~~~~~Dlv  104 (265)
                      .++.+|||+|||+|..+..+++..  .+|+++|+++.+++.+++.   .++....   ....+|....+.  +.++||.|
T Consensus       237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v---~~~~~d~~~~~~~~~~~~fD~V  313 (426)
T TIGR00563       237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKA---ETKDGDGRGPSQWAENEQFDRI  313 (426)
T ss_pred             CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEE---EEeccccccccccccccccCEE
Confidence            356899999999999999999865  4799999999999988742   2222110   011134333322  45689999


Q ss_pred             Eecc------ccc------cC-C----------hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          105 TIAQ------AMH------WF-D----------LPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       105 ~~~~------~~~------~~-~----------~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      ++.-      .++      |. +          ...++.++.++|| |||.++..+..
T Consensus       314 llDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lk-pgG~lvystcs  370 (426)
T TIGR00563       314 LLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLK-TGGTLVYATCS  370 (426)
T ss_pred             EEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEEeCC
Confidence            9632      232      22 1          2468999999999 99999987765

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.96  E-value=4.7e-09  Score=95.33  Aligned_cols=99  Identities=12%  Similarity=0.198  Sum_probs=72.5

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC------CCceEEecCCccchhhhhhcc--CCCCc
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAELEQNV--AAQST  100 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d~~~~~--~~~~~  100 (265)
                      .++.+|||+|||+|..+..+++..   .+|+++|+++.+++.+++.      .++.+..       +|+..+.  ++ ++
T Consensus       249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~-------~D~~~~~~~~~-~~  320 (444)
T PRK14902        249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKA-------LDARKVHEKFA-EK  320 (444)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEe-------CCcccccchhc-cc
Confidence            456789999999999999999864   4799999999999988652      3456665       5554432  22 68


Q ss_pred             eeEEEecccc------------ccC-Ch----------hHHHHHHHHHhcCCCcEEEEEecC
Q 024647          101 VDLVTIAQAM------------HWF-DL----------PQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       101 ~Dlv~~~~~~------------~~~-~~----------~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      ||+|++....            .|. .+          ..++..+.++|| |||.++..+..
T Consensus       321 fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~Lk-pGG~lvystcs  381 (444)
T PRK14902        321 FDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLK-KGGILVYSTCT  381 (444)
T ss_pred             CCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcC-CCCEEEEEcCC
Confidence            9999985421            121 11          247899999999 99999876553

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.95  E-value=6.3e-10  Score=94.84  Aligned_cols=93  Identities=20%  Similarity=0.204  Sum_probs=71.1

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC------CC-ceEEecCCccchhhhhhccCCCCceeEE
Q 024647           33 NHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL------PN-IRYELTSPAMSIAELEQNVAAQSTVDLV  104 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~------~~-~~~~~~~~~~~~~d~~~~~~~~~~~Dlv  104 (265)
                      +++.|||||||||.++...++.|+ +|+|||.|.-+ +.|.+.      .+ +++..       +.++++.+|-+.+|+|
T Consensus        60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~-------gkvEdi~LP~eKVDiI  131 (346)
T KOG1499|consen   60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIK-------GKVEDIELPVEKVDII  131 (346)
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEee-------cceEEEecCccceeEE
Confidence            578999999999999999999997 69999998775 666542      22 55555       5566666667899999


Q ss_pred             EeccccccCCh----hHHHHHHHHHhcCCCcEEE
Q 024647          105 TIAQAMHWFDL----PQFYNQVKWVLKKPNGVIA  134 (265)
Q Consensus       105 ~~~~~~~~~~~----~~~l~~~~~~Lk~pgG~l~  134 (265)
                      ++-+.-+|+=.    ..++-.-.+-|+ |||.++
T Consensus       132 vSEWMGy~Ll~EsMldsVl~ARdkwL~-~~G~i~  164 (346)
T KOG1499|consen  132 VSEWMGYFLLYESMLDSVLYARDKWLK-EGGLIY  164 (346)
T ss_pred             eehhhhHHHHHhhhhhhhhhhhhhccC-CCceEc
Confidence            99987666533    345555578899 999775

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.93  E-value=1.7e-09  Score=103.17  Aligned_cols=100  Identities=16%  Similarity=0.099  Sum_probs=73.5

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC--------CCceEEecCCccchhhhhhcc-CCCCce
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL--------PNIRYELTSPAMSIAELEQNV-AAQSTV  101 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~d~~~~~-~~~~~~  101 (265)
                      .++.+|||+|||+|.++..++..++ +|++||+|+.+++.+++.        .++.++.       +|+.++. ...++|
T Consensus       537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~-------~D~~~~l~~~~~~f  609 (702)
T PRK11783        537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQ-------ADCLAWLKEAREQF  609 (702)
T ss_pred             cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEE-------ccHHHHHHHcCCCc
Confidence            3467899999999999999999876 599999999999998862        1355555       5543321 124689


Q ss_pred             eEEEecccc-c----------cC-ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          102 DLVTIAQAM-H----------WF-DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       102 Dlv~~~~~~-~----------~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      |+|+++-.. -          .. +...++..+.++|+ |||.+++.+..
T Consensus       610 DlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~-~gG~l~~~~~~  658 (702)
T PRK11783        610 DLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLR-PGGTLYFSNNK  658 (702)
T ss_pred             CEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcC-CCCEEEEEeCC
Confidence            999996421 0          11 23467888999999 99999875543

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.92  E-value=4.9e-09  Score=94.94  Aligned_cols=114  Identities=19%  Similarity=0.257  Sum_probs=76.9

Q ss_pred             CCCcHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc------CCCceEEecCCccch
Q 024647           17 PNYPEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK------LPNIRYELTSPAMSI   88 (265)
Q Consensus        17 p~y~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~   88 (265)
                      +...+.+++.+....  .++.+|||+|||+|.++..+++...+|+|+|+++.|++.|++      ..|+.+..+++.   
T Consensus       274 ~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~---  350 (431)
T TIGR00479       274 SGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLE---  350 (431)
T ss_pred             HHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHH---
Confidence            334455666665544  355789999999999999999988899999999999998875      246777774431   


Q ss_pred             hhhhhccCCCCceeEEEeccccccCC-hhHHHHHHHHHhcCCCcEEEEEe
Q 024647           89 AELEQNVAAQSTVDLVTIAQAMHWFD-LPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        89 ~d~~~~~~~~~~~Dlv~~~~~~~~~~-~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      ..+..+...+++||+|++.-.-  .. ...+++.+.+ ++ |++.+++.+
T Consensus       351 ~~l~~~~~~~~~~D~vi~dPPr--~G~~~~~l~~l~~-l~-~~~ivyvsc  396 (431)
T TIGR00479       351 TVLPKQPWAGQIPDVLLLDPPR--KGCAAEVLRTIIE-LK-PERIVYVSC  396 (431)
T ss_pred             HHHHHHHhcCCCCCEEEECcCC--CCCCHHHHHHHHh-cC-CCEEEEEcC
Confidence            0011222335679999975421  11 2456665554 78 888776644

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.90  E-value=7.6e-09  Score=87.27  Aligned_cols=84  Identities=15%  Similarity=0.185  Sum_probs=65.9

Q ss_pred             cHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC----CCceEEecCCccchhhhhh
Q 024647           20 PEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL----PNIRYELTSPAMSIAELEQ   93 (265)
Q Consensus        20 ~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~d~~~   93 (265)
                      .+.+++.+....  .++.+|||+|||+|.+|..+++++.+|+++|+++.|++.+++.    +++.+..       +|+.+
T Consensus        14 d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~-------~D~~~   86 (258)
T PRK14896         14 DDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAAGNVEIIE-------GDALK   86 (258)
T ss_pred             CHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccCCCEEEEE-------ecccc
Confidence            455666666553  4568899999999999999999988999999999999988752    3566665       67766


Q ss_pred             ccCCCCceeEEEecccccc
Q 024647           94 NVAAQSTVDLVTIAQAMHW  112 (265)
Q Consensus        94 ~~~~~~~~Dlv~~~~~~~~  112 (265)
                      ++++  .+|.|+++...+.
T Consensus        87 ~~~~--~~d~Vv~NlPy~i  103 (258)
T PRK14896         87 VDLP--EFNKVVSNLPYQI  103 (258)
T ss_pred             CCch--hceEEEEcCCccc
Confidence            6544  5899999987664

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.89  E-value=5e-09  Score=84.27  Aligned_cols=95  Identities=21%  Similarity=0.360  Sum_probs=62.8

Q ss_pred             CCCeEEEEcCCcchhHHH----HHhc----CC---cEEEEcCCHHHHHHHHcC---------------------------
Q 024647           33 NHELAWDVGTGSGQAAAS----LSGI----FE---NVIGTETSPKQIEFATKL---------------------------   74 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~----l~~~----~~---~v~~vD~s~~~~~~a~~~---------------------------   74 (265)
                      ++-+|+.+||+||.-+..    +.+.    ..   +|+|+|+|+.+++.|++-                           
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            456899999999944333    3341    22   699999999999999851                           


Q ss_pred             -------CCceEEecCCccchhhhhhccCCCCceeEEEeccccccCChh---HHHHHHHHHhcCCCcEEEE
Q 024647           75 -------PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLP---QFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus        75 -------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~---~~l~~~~~~Lk~pgG~l~~  135 (265)
                             ..+.|...+       +-+.+.+.+.||+|+|.+++-+++.+   ++++.+.+.|+ |||.|++
T Consensus       111 ~v~~~lr~~V~F~~~N-------L~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~-pgG~L~l  173 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHN-------LLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLK-PGGYLFL  173 (196)
T ss_dssp             TE-HHHHTTEEEEE---------TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEE-EEEEEEE
T ss_pred             eEChHHcCceEEEecc-------cCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcC-CCCEEEE
Confidence                   245666533       33323356789999999999999654   69999999999 9999987

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.89  E-value=2.5e-08  Score=82.09  Aligned_cols=103  Identities=15%  Similarity=0.172  Sum_probs=68.0

Q ss_pred             HHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHH-HHcCCCce-EEecCCccchhhhhhccC
Q 024647           22 ELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEF-ATKLPNIR-YELTSPAMSIAELEQNVA   96 (265)
Q Consensus        22 ~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~-a~~~~~~~-~~~~~~~~~~~d~~~~~~   96 (265)
                      ++...+....  .++.+|||+|||||.+|..+++.++ +|+|+|+++.|+.. .+..+.+. +...+++.  -+.++.+.
T Consensus        62 kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~--~~~~~~~~  139 (228)
T TIGR00478        62 KLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRY--VTPADIFP  139 (228)
T ss_pred             HHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCccc--CCHhHcCC
Confidence            4444444432  3567899999999999999999965 69999999988875 55444432 33334331  12233322


Q ss_pred             CCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEE
Q 024647           97 AQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus        97 ~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~  135 (265)
                      .-..+|+++++..       ..+..+.+.|+ | |.+++
T Consensus       140 d~~~~DvsfiS~~-------~~l~~i~~~l~-~-~~~~~  169 (228)
T TIGR00478       140 DFATFDVSFISLI-------SILPELDLLLN-P-NDLTL  169 (228)
T ss_pred             CceeeeEEEeehH-------hHHHHHHHHhC-c-CeEEE
Confidence            2246777766533       36889999999 8 76654

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.88  E-value=1.7e-08  Score=84.89  Aligned_cols=84  Identities=15%  Similarity=0.177  Sum_probs=64.0

Q ss_pred             cHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC----CCceEEecCCccchhhhhh
Q 024647           20 PEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL----PNIRYELTSPAMSIAELEQ   93 (265)
Q Consensus        20 ~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~d~~~   93 (265)
                      .+.+.+.+....  .++.+|||+|||+|.++..+++++.+|+++|+++.|++.++..    +++.+..       +|+..
T Consensus        14 d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~-------~D~~~   86 (253)
T TIGR00755        14 DESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLYERLEVIE-------GDALK   86 (253)
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcCCcEEEEE-------Cchhc
Confidence            355666666554  4568999999999999999999999999999999999988752    4555555       66666


Q ss_pred             ccCCCCcee---EEEecccccc
Q 024647           94 NVAAQSTVD---LVTIAQAMHW  112 (265)
Q Consensus        94 ~~~~~~~~D---lv~~~~~~~~  112 (265)
                      .+.+  .+|   +|+++...|+
T Consensus        87 ~~~~--~~d~~~~vvsNlPy~i  106 (253)
T TIGR00755        87 VDLP--DFPKQLKVVSNLPYNI  106 (253)
T ss_pred             CChh--HcCCcceEEEcCChhh
Confidence            6543  466   8888866554

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PRK00536 speE spermidine synthase; Provisional

Probab=98.88  E-value=2.9e-08  Score=83.11  Aligned_cols=105  Identities=16%  Similarity=0.012  Sum_probs=79.6

Q ss_pred             CcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc-C---------CCceEEecCCccch
Q 024647           19 YPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK-L---------PNIRYELTSPAMSI   88 (265)
Q Consensus        19 y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-~---------~~~~~~~~~~~~~~   88 (265)
                      |.+.++.--+...+.+++||=+|.|.|...+.++++-.+|+.||+++.+++.+++ +         ++++...       
T Consensus        58 YHEmLvHppl~~h~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-------  130 (262)
T PRK00536         58 ESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-------  130 (262)
T ss_pred             HHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-------
Confidence            4455555444455778999999999999999999987799999999999999997 2         2333332       


Q ss_pred             hhhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647           89 AELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        89 ~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      . +.+  ...++||+|++...    ..+.+++.+.++|+ |||+++...-
T Consensus       131 ~-~~~--~~~~~fDVIIvDs~----~~~~fy~~~~~~L~-~~Gi~v~Qs~  172 (262)
T PRK00536        131 Q-LLD--LDIKKYDLIICLQE----PDIHKIDGLKRMLK-EDGVFISVAK  172 (262)
T ss_pred             h-hhh--ccCCcCCEEEEcCC----CChHHHHHHHHhcC-CCcEEEECCC
Confidence            1 111  12468999998743    45789999999999 9999998543

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.88  E-value=5.8e-08  Score=74.34  Aligned_cols=115  Identities=14%  Similarity=0.163  Sum_probs=87.8

Q ss_pred             cHHHHHHHHhhCC--CCCeEEEEcCCcchhHHHHHhcCC---cEEEEcCCHHHHHHHHc-CCCceEEecCCccchhhhhh
Q 024647           20 PEELFKFITSKTT--NHELAWDVGTGSGQAAASLSGIFE---NVIGTETSPKQIEFATK-LPNIRYELTSPAMSIAELEQ   93 (265)
Q Consensus        20 ~~~l~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~   93 (265)
                      ++-+.+.+.+...  .+..|||+|.|||.+|.++.+++.   .++++|.|+....+.++ .+.++++++++    -+++.
T Consensus        33 Ss~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda----~~l~~  108 (194)
T COG3963          33 SSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDA----FDLRT  108 (194)
T ss_pred             cHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccch----hhHHH
Confidence            4566666666543  345799999999999999999874   59999999999998876 57888888655    22221


Q ss_pred             -cc-CCCCceeEEEeccccccCCh---hHHHHHHHHHhcCCCcEEEEEecC
Q 024647           94 -NV-AAQSTVDLVTIAQAMHWFDL---PQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        94 -~~-~~~~~~Dlv~~~~~~~~~~~---~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                       +. ..+.-||.|+|...+--+..   .+.++.+...|. +||.++...++
T Consensus       109 ~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~-~gg~lvqftYg  158 (194)
T COG3963         109 TLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLP-AGGPLVQFTYG  158 (194)
T ss_pred             HHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcC-CCCeEEEEEec
Confidence             11 24557999999886665643   368899999999 99999988887

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=98.87  E-value=8.5e-09  Score=84.18  Aligned_cols=88  Identities=17%  Similarity=0.227  Sum_probs=71.0

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccccc
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMH  111 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~  111 (265)
                      +....|-|+|||.+.++.   ....+|...|+.+.         |-+.+.       .|+.++|++++++|++++..++.
T Consensus       179 ~~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a~---------~~~V~~-------cDm~~vPl~d~svDvaV~CLSLM  239 (325)
T KOG3045|consen  179 PKNIVIADFGCGEAKIAS---SERHKVHSFDLVAV---------NERVIA-------CDMRNVPLEDESVDVAVFCLSLM  239 (325)
T ss_pred             cCceEEEecccchhhhhh---ccccceeeeeeecC---------CCceee-------ccccCCcCccCcccEEEeeHhhh
Confidence            566789999999987766   44567888887443         334444       67788999999999999988877


Q ss_pred             cCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          112 WFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       112 ~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      =-|...++.++.|+|+ |||.+.+....
T Consensus       240 gtn~~df~kEa~RiLk-~gG~l~IAEv~  266 (325)
T KOG3045|consen  240 GTNLADFIKEANRILK-PGGLLYIAEVK  266 (325)
T ss_pred             cccHHHHHHHHHHHhc-cCceEEEEehh
Confidence            6699999999999999 99999986654

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.85  E-value=6e-09  Score=93.97  Aligned_cols=119  Identities=18%  Similarity=0.307  Sum_probs=80.7

Q ss_pred             hHHHHHHHHHhhhCCCCcHHHHHHHHhhCC------CCCeEEEEcCCcchhHHHHHhcC------CcEEEEcCCHHHHHH
Q 024647            3 ELFIKQAKQYAETRPNYPEELFKFITSKTT------NHELAWDVGTGSGQAAASLSGIF------ENVIGTETSPKQIEF   70 (265)
Q Consensus         3 ~~f~~~a~~Y~~~rp~y~~~l~~~l~~~~~------~~~~vlDvGcG~G~~~~~l~~~~------~~v~~vD~s~~~~~~   70 (265)
                      +.|+++.-.|+.    |...+.+.|.....      ++..|+|||||+|.++...++.+      .+|++||.|+.+...
T Consensus       154 e~fE~D~vKY~~----Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~  229 (448)
T PF05185_consen  154 EVFEKDPVKYDQ----YERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVT  229 (448)
T ss_dssp             HHHCC-HHHHHH----HHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHH
T ss_pred             hhHhcCHHHHHH----HHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHH
Confidence            567788888888    55556566655433      24689999999999998877665      379999999987765


Q ss_pred             HHc-------CCCceEEecCCccchhhhhhccCCCCceeEEEeccccccCC---hhHHHHHHHHHhcCCCcEEE
Q 024647           71 ATK-------LPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFD---LPQFYNQVKWVLKKPNGVIA  134 (265)
Q Consensus        71 a~~-------~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~---~~~~l~~~~~~Lk~pgG~l~  134 (265)
                      +++       ...|+++.       +|++++..+ +.+|+|++-..-...+   .+.++..+.|.|| |||+++
T Consensus       230 l~~~v~~n~w~~~V~vi~-------~d~r~v~lp-ekvDIIVSElLGsfg~nEl~pE~Lda~~rfLk-p~Gi~I  294 (448)
T PF05185_consen  230 LQKRVNANGWGDKVTVIH-------GDMREVELP-EKVDIIVSELLGSFGDNELSPECLDAADRFLK-PDGIMI  294 (448)
T ss_dssp             HHHHHHHTTTTTTEEEEE-------S-TTTSCHS-S-EEEEEE---BTTBTTTSHHHHHHHGGGGEE-EEEEEE
T ss_pred             HHHHHHhcCCCCeEEEEe-------CcccCCCCC-CceeEEEEeccCCccccccCHHHHHHHHhhcC-CCCEEe
Confidence            532       14677777       778888644 5999999976433222   2357888899999 999876

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PLN02823 spermine synthase

Probab=98.83  E-value=3.6e-08  Score=85.73  Aligned_cols=118  Identities=19%  Similarity=0.210  Sum_probs=79.1

Q ss_pred             CcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcCC---CceEEecCCccchhhhhh
Q 024647           19 YPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKLP---NIRYELTSPAMSIAELEQ   93 (265)
Q Consensus        19 y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~---~~~~~~~~~~~~~~d~~~   93 (265)
                      |.+.++.......+.+.+||.||+|.|.+++.+.++.  .+|+.||+++.+++.+++.-   +-.+....++++.+|...
T Consensus        89 YhE~l~h~~l~~~~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~  168 (336)
T PLN02823         89 YHESLVHPALLHHPNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARA  168 (336)
T ss_pred             HHHHHHhHHHhhCCCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHH
Confidence            5555554444444567889999999999999988864  47999999999999998621   000112223333355444


Q ss_pred             c-cCCCCceeEEEeccccccC-------ChhHHHH-HHHHHhcCCCcEEEEEe
Q 024647           94 N-VAAQSTVDLVTIAQAMHWF-------DLPQFYN-QVKWVLKKPNGVIATWC  137 (265)
Q Consensus        94 ~-~~~~~~~Dlv~~~~~~~~~-------~~~~~l~-~~~~~Lk~pgG~l~~~~  137 (265)
                      . ....++||+|++...-.+.       -...+++ .+.+.|+ |||+++++.
T Consensus       169 ~L~~~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~-p~Gvlv~q~  220 (336)
T PLN02823        169 ELEKRDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLN-PGGIFVTQA  220 (336)
T ss_pred             HHhhCCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcC-CCcEEEEec
Confidence            3 2345689999987432211       1235787 8999999 999998754

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.83  E-value=2.7e-08  Score=79.89  Aligned_cols=116  Identities=12%  Similarity=0.042  Sum_probs=76.0

Q ss_pred             hCCCCcHHHHHHHHhhC---CCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC-------CCceEEecC
Q 024647           15 TRPNYPEELFKFITSKT---TNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL-------PNIRYELTS   83 (265)
Q Consensus        15 ~rp~y~~~l~~~l~~~~---~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~~   83 (265)
                      .||+ .+.+.+.+.+..   -++.+|||++||+|.++..++.+++ +|+++|.++.+++.+++.       .++.+..  
T Consensus        29 ~rpt-~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~--  105 (189)
T TIGR00095        29 TRPT-TRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVR--  105 (189)
T ss_pred             CCCc-hHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEe--
Confidence            4665 455544444433   2567899999999999999999987 799999999999887652       1345555  


Q ss_pred             Cccchhhhhhc-c-C-CCC-ceeEEEeccccccCChhHHHHHHH--HHhcCCCcEEEEEecC
Q 024647           84 PAMSIAELEQN-V-A-AQS-TVDLVTIAQAMHWFDLPQFYNQVK--WVLKKPNGVIATWCYT  139 (265)
Q Consensus        84 ~~~~~~d~~~~-~-~-~~~-~~Dlv~~~~~~~~~~~~~~l~~~~--~~Lk~pgG~l~~~~~~  139 (265)
                           +|+... . . ... .+|+|+..-....-....++..+.  .+|+ ++|.+++....
T Consensus       106 -----~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~-~~~iiv~E~~~  161 (189)
T TIGR00095       106 -----NSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELCENNWILE-DTVLIVVEEDR  161 (189)
T ss_pred             -----hhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCC-CCeEEEEEecC
Confidence                 555332 1 1 122 478888766554333344555443  3688 88888876544

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.83  E-value=1.4e-08  Score=80.48  Aligned_cols=103  Identities=15%  Similarity=0.190  Sum_probs=64.1

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhc--CCcEEEEcCCHHHHHHHHcC---------CCceEEecCCccchhhhhhccCCCCc
Q 024647           32 TNHELAWDVGTGSGQAAASLSGI--FENVIGTETSPKQIEFATKL---------PNIRYELTSPAMSIAELEQNVAAQST  100 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~---------~~~~~~~~~~~~~~~d~~~~~~~~~~  100 (265)
                      .++.+|||+|||+|..+..++..  ..+|+.+|.++ .++.++..         .++.+...+-  -. +...-....++
T Consensus        44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~W--g~-~~~~~~~~~~~  119 (173)
T PF10294_consen   44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDW--GD-ELDSDLLEPHS  119 (173)
T ss_dssp             TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--T--TS--HHHHHHS-SS
T ss_pred             cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEe--cC-ccccccccccc
Confidence            45689999999999999999988  56899999999 77765531         2333333221  10 11111124568


Q ss_pred             eeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          101 VDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       101 ~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      ||+|+++.+++.- ..+.+++-+.++|+ |+|.+++....
T Consensus       120 ~D~IlasDv~Y~~~~~~~L~~tl~~ll~-~~~~vl~~~~~  158 (173)
T PF10294_consen  120 FDVILASDVLYDEELFEPLVRTLKRLLK-PNGKVLLAYKR  158 (173)
T ss_dssp             BSEEEEES--S-GGGHHHHHHHHHHHBT-T-TTEEEEEE-
T ss_pred             CCEEEEecccchHHHHHHHHHHHHHHhC-CCCEEEEEeCE
Confidence            9999999999877 66789999999999 89886664443

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.83  E-value=1.6e-08  Score=85.85  Aligned_cols=101  Identities=15%  Similarity=0.246  Sum_probs=68.0

Q ss_pred             CCeEEEEcCCcchhHH----HHHhcC------CcEEEEcCCHHHHHHHHcC--C-----Cc-------e-----------
Q 024647           34 HELAWDVGTGSGQAAA----SLSGIF------ENVIGTETSPKQIEFATKL--P-----NI-------R-----------   78 (265)
Q Consensus        34 ~~~vlDvGcG~G~~~~----~l~~~~------~~v~~vD~s~~~~~~a~~~--~-----~~-------~-----------   78 (265)
                      +-+|+..||+||.-..    .+.+.+      .+|+|+|+|+.+++.|++.  +     ++       -           
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            4689999999994333    333432      2599999999999999851  1     00       0           


Q ss_pred             EEe-----cCCccchhhhhhccC-CCCceeEEEeccccccCCh---hHHHHHHHHHhcCCCcEEEE
Q 024647           79 YEL-----TSPAMSIAELEQNVA-AQSTVDLVTIAQAMHWFDL---PQFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus        79 ~~~-----~~~~~~~~d~~~~~~-~~~~~Dlv~~~~~~~~~~~---~~~l~~~~~~Lk~pgG~l~~  135 (265)
                      +..     ..+.+...|+.+.+. +.+.||+|+|.+++.+++.   .++++.+.+.|+ |||.|++
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~-pgG~L~l  260 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLK-PDGLLFA  260 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhC-CCcEEEE
Confidence            110     011222233333222 2578999999999999954   479999999999 9998876

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.83  E-value=1.9e-08  Score=86.09  Aligned_cols=86  Identities=14%  Similarity=0.196  Sum_probs=65.8

Q ss_pred             cHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc-------CCCceEEecCCccchhh
Q 024647           20 PEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK-------LPNIRYELTSPAMSIAE   90 (265)
Q Consensus        20 ~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-------~~~~~~~~~~~~~~~~d   90 (265)
                      .+.+++.+....  .++.+|||||||+|.+|..+++.+.+|+++|+++.|++.+++       ..++++..       +|
T Consensus        21 d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~-------~D   93 (294)
T PTZ00338         21 NPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIE-------GD   93 (294)
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEE-------CC
Confidence            455666666543  466889999999999999999998899999999999998875       13566666       66


Q ss_pred             hhhccCCCCceeEEEeccccccCC
Q 024647           91 LEQNVAAQSTVDLVTIAQAMHWFD  114 (265)
Q Consensus        91 ~~~~~~~~~~~Dlv~~~~~~~~~~  114 (265)
                      +...+.  ..+|.|+++...++..
T Consensus        94 al~~~~--~~~d~VvaNlPY~Ist  115 (294)
T PTZ00338         94 ALKTEF--PYFDVCVANVPYQISS  115 (294)
T ss_pred             Hhhhcc--cccCEEEecCCcccCc
Confidence            655543  3689999987666543

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.81  E-value=2.7e-08  Score=80.72  Aligned_cols=107  Identities=19%  Similarity=0.263  Sum_probs=74.9

Q ss_pred             HHHHHhhCCCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhh
Q 024647           24 FKFITSKTTNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQ   93 (265)
Q Consensus        24 ~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~   93 (265)
                      +..+... ..+.+||||||++|..+..+++..   .+|+.+|+++.+.+.|++.       ..++++.+++.-.   +..
T Consensus        37 L~~l~~~-~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~---l~~  112 (205)
T PF01596_consen   37 LQMLVRL-TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEV---LPE  112 (205)
T ss_dssp             HHHHHHH-HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHH---HHH
T ss_pred             HHHHHHh-cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhh---HHH
Confidence            4334333 355789999999999999999864   4799999999999998752       4677887554111   122


Q ss_pred             cc--CCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647           94 NV--AAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        94 ~~--~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      +.  .+.++||+|+....-.  +....+..+.++|+ |||.+++-+
T Consensus       113 l~~~~~~~~fD~VFiDa~K~--~y~~y~~~~~~ll~-~ggvii~DN  155 (205)
T PF01596_consen  113 LANDGEEGQFDFVFIDADKR--NYLEYFEKALPLLR-PGGVIIADN  155 (205)
T ss_dssp             HHHTTTTTSEEEEEEESTGG--GHHHHHHHHHHHEE-EEEEEEEET
T ss_pred             HHhccCCCceeEEEEccccc--chhhHHHHHhhhcc-CCeEEEEcc
Confidence            21  1235899999864211  34568888999999 999998843

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.80  E-value=3.3e-08  Score=82.13  Aligned_cols=113  Identities=22%  Similarity=0.263  Sum_probs=80.3

Q ss_pred             CCcHHHHHHHHhh-CCCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHc------C-CCceEEecCCcc
Q 024647           18 NYPEELFKFITSK-TTNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATK------L-PNIRYELTSPAM   86 (265)
Q Consensus        18 ~y~~~l~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~------~-~~~~~~~~~~~~   86 (265)
                      -||.+..-.+... ..++++|||.|.|+|.+|..|+...   .+|+..|..+...+.|++      + .++.+...    
T Consensus        24 iYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~----   99 (247)
T PF08704_consen   24 IYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHR----   99 (247)
T ss_dssp             --HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES----
T ss_pred             eeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEec----
Confidence            6777776655543 3688999999999999999999754   479999999999999885      2 46777774    


Q ss_pred             chhhhhhccC---CCCceeEEEeccccccCChhHHHHHHHHHh-cCCCcEEEEEecCCCC
Q 024647           87 SIAELEQNVA---AQSTVDLVTIAQAMHWFDLPQFYNQVKWVL-KKPNGVIATWCYTVPE  142 (265)
Q Consensus        87 ~~~d~~~~~~---~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~L-k~pgG~l~~~~~~~~~  142 (265)
                         |+..-.+   .+..+|.|+....    +|-.++..+.++| + |||.++++.+.-..
T Consensus       100 ---Dv~~~g~~~~~~~~~DavfLDlp----~Pw~~i~~~~~~L~~-~gG~i~~fsP~ieQ  151 (247)
T PF08704_consen  100 ---DVCEEGFDEELESDFDAVFLDLP----DPWEAIPHAKRALKK-PGGRICCFSPCIEQ  151 (247)
T ss_dssp             ----GGCG--STT-TTSEEEEEEESS----SGGGGHHHHHHHE-E-EEEEEEEEESSHHH
T ss_pred             ---ceecccccccccCcccEEEEeCC----CHHHHHHHHHHHHhc-CCceEEEECCCHHH
Confidence               4432222   1357999998732    6668999999999 8 99999998876433

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.79  E-value=5.1e-08  Score=86.53  Aligned_cols=118  Identities=14%  Similarity=0.198  Sum_probs=77.1

Q ss_pred             HHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC------CCceEEecCCccchhhhhh
Q 024647           22 ELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAELEQ   93 (265)
Q Consensus        22 ~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d~~~   93 (265)
                      .+++.+....  .++.+|||+|||+|.++..++..+.+|+|+|+++.+++.|++.      .++.+..       +|+.+
T Consensus       220 ~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~-------~d~~~  292 (374)
T TIGR02085       220 QLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAA-------LDSAK  292 (374)
T ss_pred             HHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEE-------CCHHH
Confidence            3444444332  2457899999999999999998888999999999999988752      3566666       55544


Q ss_pred             ccC-CCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHh
Q 024647           94 NVA-AQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAV  150 (265)
Q Consensus        94 ~~~-~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~  150 (265)
                      ... ...+||+|+++-.--= -...+++.+. .++ |++++++.+. +.++...+..+
T Consensus       293 ~~~~~~~~~D~vi~DPPr~G-~~~~~l~~l~-~~~-p~~ivyvsc~-p~TlaRDl~~L  346 (374)
T TIGR02085       293 FATAQMSAPELVLVNPPRRG-IGKELCDYLS-QMA-PKFILYSSCN-AQTMAKDIAEL  346 (374)
T ss_pred             HHHhcCCCCCEEEECCCCCC-CcHHHHHHHH-hcC-CCeEEEEEeC-HHHHHHHHHHh
Confidence            321 1245999998743110 1134555554 478 8888887653 33444444443

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=98.79  E-value=5.9e-08  Score=80.02  Aligned_cols=122  Identities=21%  Similarity=0.262  Sum_probs=81.7

Q ss_pred             CCCCcHHHHHHHHhhCC-----CCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC-------CCceEEe
Q 024647           16 RPNYPEELFKFITSKTT-----NHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL-------PNIRYEL   81 (265)
Q Consensus        16 rp~y~~~l~~~l~~~~~-----~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~-------~~~~~~~   81 (265)
                      ||. +++.++++....+     ++..+||+|||+|..+..++...+  .|++||.|+.++..|.+.       ..+..+.
T Consensus       127 RpE-TEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~  205 (328)
T KOG2904|consen  127 RPE-TEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIH  205 (328)
T ss_pred             Ccc-HHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEe
Confidence            555 6777888766542     345799999999999999988765  599999999999988752       2333332


Q ss_pred             cCCccchhhh-hhccCCCCceeEEEeccccccC-C--------------------------hhHHHHHHHHHhcCCCcEE
Q 024647           82 TSPAMSIAEL-EQNVAAQSTVDLVTIAQAMHWF-D--------------------------LPQFYNQVKWVLKKPNGVI  133 (265)
Q Consensus        82 ~~~~~~~~d~-~~~~~~~~~~Dlv~~~~~~~~~-~--------------------------~~~~l~~~~~~Lk~pgG~l  133 (265)
                      ...+   .|. ...+...++.|++++|-..--- |                          ...++.-+.|+|+ |||.+
T Consensus       206 ~~me---~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq-~gg~~  281 (328)
T KOG2904|consen  206 NIME---SDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQ-PGGFE  281 (328)
T ss_pred             cccc---cccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcc-cCCeE
Confidence            1111   222 2233566899999998632111 1                          1145667889999 99999


Q ss_pred             EEEecCCCC
Q 024647          134 ATWCYTVPE  142 (265)
Q Consensus       134 ~~~~~~~~~  142 (265)
                      .+.....+.
T Consensus       282 ~le~~~~~~  290 (328)
T KOG2904|consen  282 QLELVERKE  290 (328)
T ss_pred             EEEeccccc
Confidence            886554333

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.75  E-value=1.9e-08  Score=78.74  Aligned_cols=85  Identities=15%  Similarity=0.229  Sum_probs=62.4

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC-----CCceEEecCCccchhhhhhccCCCCceeEEEe
Q 024647           33 NHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL-----PNIRYELTSPAMSIAELEQNVAAQSTVDLVTI  106 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~  106 (265)
                      .+.+|+|+|||||.++...+-.++ +|+|+|+++++++.+++.     .++.+..       +|+.+.   .+.+|.++.
T Consensus        45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~-------~dv~~~---~~~~dtvim  114 (198)
T COG2263          45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVV-------ADVSDF---RGKFDTVIM  114 (198)
T ss_pred             CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEE-------cchhhc---CCccceEEE
Confidence            456799999999999999999996 699999999999999863     2466666       666655   356888888


Q ss_pred             cccccc-C-C-hhHHHHHHHHHhc
Q 024647          107 AQAMHW-F-D-LPQFYNQVKWVLK  127 (265)
Q Consensus       107 ~~~~~~-~-~-~~~~l~~~~~~Lk  127 (265)
                      |-.+-- . . --.++..+.++-+
T Consensus       115 NPPFG~~~rhaDr~Fl~~Ale~s~  138 (198)
T COG2263         115 NPPFGSQRRHADRPFLLKALEISD  138 (198)
T ss_pred             CCCCccccccCCHHHHHHHHHhhh
Confidence            765421 2 1 1246666665544

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.75  E-value=1.3e-07  Score=76.91  Aligned_cols=97  Identities=21%  Similarity=0.271  Sum_probs=73.2

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCC---cEEEEcCCHHHHHHHHcC-------CCceEEec-CCccchhhhhhcc-CCCC
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFE---NVIGTETSPKQIEFATKL-------PNIRYELT-SPAMSIAELEQNV-AAQS   99 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~-------~~~~~~~~-~~~~~~~d~~~~~-~~~~   99 (265)
                      .++++|||||.+.|..+..++...+   +++.||+++++.+.|++.       ..+....+ ++      ++.+. ...+
T Consensus        58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gda------l~~l~~~~~~  131 (219)
T COG4122          58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDA------LDVLSRLLDG  131 (219)
T ss_pred             cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcH------HHHHHhccCC
Confidence            4668899999999999999997654   699999999999999862       22444442 22      12221 3568


Q ss_pred             ceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          100 TVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       100 ~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      +||+|+....   - +.+.++..+.++|+ |||.+++-+.
T Consensus       132 ~fDliFIDad---K~~yp~~le~~~~lLr-~GGliv~DNv  167 (219)
T COG4122         132 SFDLVFIDAD---KADYPEYLERALPLLR-PGGLIVADNV  167 (219)
T ss_pred             CccEEEEeCC---hhhCHHHHHHHHHHhC-CCcEEEEeec
Confidence            9999997632   2 45789999999999 9999998443

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.74  E-value=9.1e-09  Score=91.71  Aligned_cols=112  Identities=17%  Similarity=0.194  Sum_probs=75.8

Q ss_pred             cHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEE---cCCHHHHHHHHcCCCceEEecCCccchhhhhhc
Q 024647           20 PEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGT---ETSPKQIEFATKLPNIRYELTSPAMSIAELEQN   94 (265)
Q Consensus        20 ~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   94 (265)
                      -+.+.+.+....  ..-..+||+|||+|.++..|.++.-.+..+   |..+.+++.|-++. +-...+.     -.-+.+
T Consensus       102 id~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRG-vpa~~~~-----~~s~rL  175 (506)
T PF03141_consen  102 IDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERG-VPAMIGV-----LGSQRL  175 (506)
T ss_pred             HHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcC-cchhhhh-----hccccc
Confidence            344444444311  233568999999999999999987654333   55556666665421 2111110     112678


Q ss_pred             cCCCCceeEEEecccc-ccC-ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647           95 VAAQSTVDLVTIAQAM-HWF-DLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        95 ~~~~~~~Dlv~~~~~~-~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      |+++++||+|.|+.++ .|. +-..++-++.|+|| |||.++...+
T Consensus       176 Pfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLR-pGGyfv~S~p  220 (506)
T PF03141_consen  176 PFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLR-PGGYFVLSGP  220 (506)
T ss_pred             cCCccchhhhhcccccccchhcccceeehhhhhhc-cCceEEecCC
Confidence            9999999999998854 677 44678999999999 9999987554

; GO: 0008168 methyltransferase activity

>PRK04148 hypothetical protein; Provisional

Probab=98.71  E-value=2.1e-07  Score=69.67  Aligned_cols=105  Identities=17%  Similarity=0.089  Sum_probs=69.6

Q ss_pred             HHHHHHHhhCC--CCCeEEEEcCCcch-hHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccC-C
Q 024647           22 ELFKFITSKTT--NHELAWDVGTGSGQ-AAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVA-A   97 (265)
Q Consensus        22 ~l~~~l~~~~~--~~~~vlDvGcG~G~-~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~   97 (265)
                      .+.++|....+  ++.++||||||+|. ++..|++.+.+|+++|+++..++.+++. .+.+..       +|+-+-.+ .
T Consensus         3 ~i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~-~~~~v~-------dDlf~p~~~~   74 (134)
T PRK04148          3 TIAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL-GLNAFV-------DDLFNPNLEI   74 (134)
T ss_pred             HHHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-CCeEEE-------CcCCCCCHHH
Confidence            45666666542  35789999999996 8889999999999999999999988863 456666       44322211 1


Q ss_pred             CCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           98 QSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        98 ~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      -+.+|+|.+.-     .+.....-+.++-++-|.-+++....
T Consensus        75 y~~a~liysir-----pp~el~~~~~~la~~~~~~~~i~~l~  111 (134)
T PRK04148         75 YKNAKLIYSIR-----PPRDLQPFILELAKKINVPLIIKPLS  111 (134)
T ss_pred             HhcCCEEEEeC-----CCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence            24689998742     34444444444443245556665544

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=98.71  E-value=3.2e-08  Score=82.23  Aligned_cols=125  Identities=17%  Similarity=0.207  Sum_probs=90.6

Q ss_pred             HHHHHHHHHhhhCCCCcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecC
Q 024647            4 LFIKQAKQYAETRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTS   83 (265)
Q Consensus         4 ~f~~~a~~Y~~~rp~y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~   83 (265)
                      -|++.|.+....|+.-=+...+.+.. .+.+..++|+|||.|-.+..=  ....++|.|.+...+.-+++........  
T Consensus        17 IYd~ia~~fs~tr~~~Wp~v~qfl~~-~~~gsv~~d~gCGngky~~~~--p~~~~ig~D~c~~l~~~ak~~~~~~~~~--   91 (293)
T KOG1331|consen   17 IYDKIATHFSATRAAPWPMVRQFLDS-QPTGSVGLDVGCGNGKYLGVN--PLCLIIGCDLCTGLLGGAKRSGGDNVCR--   91 (293)
T ss_pred             HHHHhhhhccccccCccHHHHHHHhc-cCCcceeeecccCCcccCcCC--CcceeeecchhhhhccccccCCCceeeh--
Confidence            35566666666666522344444444 355788999999998554321  1225899999999999888633223333  


Q ss_pred             CccchhhhhhccCCCCceeEEEeccccccCC----hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           84 PAMSIAELEQNVAAQSTVDLVTIAQAMHWFD----LPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        84 ~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~----~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                           +|+-.+|..+.+||.+++...+||+.    ...+++++.|+|+ |||...++.+.
T Consensus        92 -----ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lr-pgg~~lvyvwa  145 (293)
T KOG1331|consen   92 -----ADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLR-PGGNALVYVWA  145 (293)
T ss_pred             -----hhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhc-CCCceEEEEeh
Confidence                 78888999999999999999999983    3479999999999 99987766554

>PLN02476 O-methyltransferase

Probab=98.70  E-value=1.5e-07  Score=79.42  Aligned_cols=99  Identities=15%  Similarity=0.229  Sum_probs=71.4

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhcc--CCCC
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNV--AAQS   99 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~--~~~~   99 (265)
                      .++++|||+|+|+|..+..++...   .+|+++|.++++.+.|++.       .++++..+++...   +..+.  ...+
T Consensus       117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~---L~~l~~~~~~~  193 (278)
T PLN02476        117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAES---LKSMIQNGEGS  193 (278)
T ss_pred             cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH---HHHHHhcccCC
Confidence            356889999999999999998753   3699999999999998752       3567777544111   11111  1236


Q ss_pred             ceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEE
Q 024647          100 TVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATW  136 (265)
Q Consensus       100 ~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~  136 (265)
                      +||+|+....-  -.....++.+.++|+ |||.+++-
T Consensus       194 ~FD~VFIDa~K--~~Y~~y~e~~l~lL~-~GGvIV~D  227 (278)
T PLN02476        194 SYDFAFVDADK--RMYQDYFELLLQLVR-VGGVIVMD  227 (278)
T ss_pred             CCCEEEECCCH--HHHHHHHHHHHHhcC-CCcEEEEe
Confidence            89999976321  134578889999999 99999873

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.70  E-value=1.1e-07  Score=79.56  Aligned_cols=113  Identities=24%  Similarity=0.256  Sum_probs=80.2

Q ss_pred             CcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC----------CCceEEecCCcc
Q 024647           19 YPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL----------PNIRYELTSPAM   86 (265)
Q Consensus        19 y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~   86 (265)
                      |.+.+........+.+.+||-||-|.|..++.+.++.  .+|++||+++.+++.+++.          ++++.+..    
T Consensus        62 y~e~l~h~~~~~~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~----  137 (246)
T PF01564_consen   62 YHEMLVHPPLLLHPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIG----  137 (246)
T ss_dssp             HHHHHHHHHHHHSSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEES----
T ss_pred             HHHHHhhhHhhcCCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEh----
Confidence            3445555545455678999999999999999999876  5799999999999999862          45677764    


Q ss_pred             chhhhhh-ccCCCC-ceeEEEeccccccC-----ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           87 SIAELEQ-NVAAQS-TVDLVTIAQAMHWF-----DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        87 ~~~d~~~-~~~~~~-~~Dlv~~~~~~~~~-----~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                         |... +.-..+ .||+|+....-...     =...+++.+.+.|+ |||+++++...
T Consensus       138 ---Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~-~~Gv~v~~~~~  193 (246)
T PF01564_consen  138 ---DGRKFLKETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLK-PDGVLVLQAGS  193 (246)
T ss_dssp             ---THHHHHHTSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEE-EEEEEEEEEEE
T ss_pred             ---hhHHHHHhccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcC-CCcEEEEEccC
Confidence               4322 222333 89999986533221     12479999999999 99999987643

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PLN02672 methionine S-methyltransferase

Probab=98.70  E-value=1e-07  Score=93.45  Aligned_cols=117  Identities=15%  Similarity=0.200  Sum_probs=75.2

Q ss_pred             CCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcCCCce---------------EEecCCccchhhhhhccC
Q 024647           34 HELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKLPNIR---------------YELTSPAMSIAELEQNVA   96 (265)
Q Consensus        34 ~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~---------------~~~~~~~~~~~d~~~~~~   96 (265)
                      +.+|||+|||+|.++..+++.++  +|+|+|+|+.+++.|++....+               .....++++.+|+.+...
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~  198 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR  198 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence            35899999999999999998764  7999999999999886421000               000123333366544321


Q ss_pred             C-CCceeEEEeccc-c--------------c------c-----C--C-----------hhHHHHHHHHHhcCCCcEEEEE
Q 024647           97 A-QSTVDLVTIAQA-M--------------H------W-----F--D-----------LPQFYNQVKWVLKKPNGVIATW  136 (265)
Q Consensus        97 ~-~~~~Dlv~~~~~-~--------------~------~-----~--~-----------~~~~l~~~~~~Lk~pgG~l~~~  136 (265)
                      . ...||+|+++-. +              |      +     .  +           ..+.+.++.++|+ |||.+++.
T Consensus       199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~-pgG~l~lE  277 (1082)
T PLN02672        199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIK-PMGIMIFN  277 (1082)
T ss_pred             ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhcc-CCCEEEEE
Confidence            1 236999999752 1              0      0     0  0           0356778889999 99999885


Q ss_pred             ecCCCCCChHHH-Hhhcc
Q 024647          137 CYTVPEVNVSVD-AVFQP  153 (265)
Q Consensus       137 ~~~~~~~~~~~~-~~~~~  153 (265)
                      ....+  .+.+. +++.+
T Consensus       278 iG~~q--~~~v~~~l~~~  293 (1082)
T PLN02672        278 MGGRP--GQAVCERLFER  293 (1082)
T ss_pred             ECccH--HHHHHHHHHHH
Confidence            54322  34555 46654

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.68  E-value=9.3e-08  Score=82.12  Aligned_cols=119  Identities=17%  Similarity=0.131  Sum_probs=90.5

Q ss_pred             CCcHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEe-cCCccch-hhhhh
Q 024647           18 NYPEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYEL-TSPAMSI-AELEQ   93 (265)
Q Consensus        18 ~y~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~-~d~~~   93 (265)
                      ..++++...+.+..  .++..|||==||||.+.....-.+.+++|+|++..|++-++.  |.+... .+..+.. .|+..
T Consensus       180 s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~--Nl~~y~i~~~~~~~~~Da~~  257 (347)
T COG1041         180 SMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKI--NLEYYGIEDYPVLKVLDATN  257 (347)
T ss_pred             CcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhh--hhhhhCcCceeEEEeccccc
Confidence            45778888777654  567799999999999999999999999999999999999884  322221 1111111 48888


Q ss_pred             ccCCCCceeEEEecccc------ccCC----hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           94 NVAAQSTVDLVTIAQAM------HWFD----LPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        94 ~~~~~~~~Dlv~~~~~~------~~~~----~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +|+++.++|.|++....      .-..    ...+++.+.++|+ +||.++++.+.
T Consensus       258 lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk-~gG~~vf~~p~  312 (347)
T COG1041         258 LPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLK-PGGRIVFAAPR  312 (347)
T ss_pred             CCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhh-cCcEEEEecCC
Confidence            99888889999986522      1111    3478999999999 99999998873

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.67  E-value=1.4e-07  Score=86.78  Aligned_cols=101  Identities=15%  Similarity=0.149  Sum_probs=79.2

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhccCCCCceeEE
Q 024647           33 NHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQNVAAQSTVDLV  104 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv  104 (265)
                      ....+||||||.|.++..+++..+  .++|+|++..-+..+.+      +.|+.+...++    ..+... ++++++|-|
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~----~~~~~~-~~~~sv~~i  421 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNL----DLILND-LPNNSLDGI  421 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCH----HHHHHh-cCcccccEE
Confidence            456799999999999999999987  59999999998776543      35777766433    112222 578899999


Q ss_pred             EeccccccC-C--------hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          105 TIAQAMHWF-D--------LPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       105 ~~~~~~~~~-~--------~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +.++.-.|. .        .+.+++.+.++|+ |||.+.+.+-.
T Consensus       422 ~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk-~gG~i~~~TD~  464 (506)
T PRK01544        422 YILFPDPWIKNKQKKKRIFNKERLKILQDKLK-DNGNLVFASDI  464 (506)
T ss_pred             EEECCCCCCCCCCccccccCHHHHHHHHHhcC-CCCEEEEEcCC
Confidence            999988887 2        2479999999999 99999886543

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.66  E-value=3.5e-07  Score=77.55  Aligned_cols=104  Identities=18%  Similarity=0.273  Sum_probs=75.8

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC-CCce--EEecCCccchhhhhhc-cCCCCceeEEE
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL-PNIR--YELTSPAMSIAELEQN-VAAQSTVDLVT  105 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-~~~~--~~~~~~~~~~~d~~~~-~~~~~~~Dlv~  105 (265)
                      +.+++||-||-|.|..++.+.++.  .+++.||+++.+++.+++. +...  .....++++.+|..++ ....++||+|+
T Consensus        75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi  154 (282)
T COG0421          75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII  154 (282)
T ss_pred             CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence            444699999999999999999987  5899999999999999873 1111  0022233344565443 22334799999


Q ss_pred             eccccccCCh------hHHHHHHHHHhcCCCcEEEEEe
Q 024647          106 IAQAMHWFDL------PQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       106 ~~~~~~~~~~------~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      +...-. ..+      ..+++.+.++|+ ++|+++...
T Consensus       155 ~D~tdp-~gp~~~Lft~eFy~~~~~~L~-~~Gi~v~q~  190 (282)
T COG0421         155 VDSTDP-VGPAEALFTEEFYEGCRRALK-EDGIFVAQA  190 (282)
T ss_pred             EcCCCC-CCcccccCCHHHHHHHHHhcC-CCcEEEEec
Confidence            986544 222      689999999999 999999873

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.66  E-value=3.2e-07  Score=77.06  Aligned_cols=94  Identities=19%  Similarity=0.306  Sum_probs=67.7

Q ss_pred             CCeEEEEcCCcch----hHHHHHhcC-------CcEEEEcCCHHHHHHHHcC--C-------------------------
Q 024647           34 HELAWDVGTGSGQ----AAASLSGIF-------ENVIGTETSPKQIEFATKL--P-------------------------   75 (265)
Q Consensus        34 ~~~vlDvGcG~G~----~~~~l~~~~-------~~v~~vD~s~~~~~~a~~~--~-------------------------   75 (265)
                      +-+|+-+||+||.    ++..|.+.+       -+|+|+|+|..+++.|+..  +                         
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y  176 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY  176 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence            5789999999994    333444444       2599999999999999851  1                         


Q ss_pred             --------CceEEecCCccchhhhhhccCCCCceeEEEeccccccCChh---HHHHHHHHHhcCCCcEEEE
Q 024647           76 --------NIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLP---QFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus        76 --------~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~---~~l~~~~~~Lk~pgG~l~~  135 (265)
                              .|.|...       ++-.-+...+.||+|+|.+++-++|.+   +++...+..|+ |||.|++
T Consensus       177 ~v~~~ir~~V~F~~~-------NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~-~gG~Lfl  239 (268)
T COG1352         177 RVKEELRKMVRFRRH-------NLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLK-PGGLLFL  239 (268)
T ss_pred             EEChHHhcccEEeec-------CCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhC-CCCEEEE
Confidence                    1222221       111111134579999999999999754   69999999999 9999987

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.66  E-value=1.3e-07  Score=83.28  Aligned_cols=65  Identities=17%  Similarity=0.204  Sum_probs=50.7

Q ss_pred             cHHHHHHHHhhCC-CCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC------CCceEEecCC
Q 024647           20 PEELFKFITSKTT-NHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL------PNIRYELTSP   84 (265)
Q Consensus        20 ~~~l~~~l~~~~~-~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~   84 (265)
                      .+.+++++..... .+.+|||+|||+|.++..+++...+|+|||+++.+++.+++.      .++.+...++
T Consensus       183 ~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~  254 (353)
T TIGR02143       183 NIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSA  254 (353)
T ss_pred             HHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCH
Confidence            3566666666543 234799999999999999999888999999999999998852      3567777443

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.65  E-value=3.2e-07  Score=76.48  Aligned_cols=97  Identities=13%  Similarity=0.213  Sum_probs=70.5

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccC---CCC
Q 024647           33 NHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVA---AQS   99 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~---~~~   99 (265)
                      ++.+|||||+++|..+..++...   .+|+.+|+++...+.|++.       .+++++.+++.-   -+..+..   ..+
T Consensus        79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e---~L~~l~~~~~~~~  155 (247)
T PLN02589         79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP---VLDQMIEDGKYHG  155 (247)
T ss_pred             CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHH---HHHHHHhccccCC
Confidence            45789999999999999998754   4799999999999988752       467777755411   1111110   136


Q ss_pred             ceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEE
Q 024647          100 TVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus       100 ~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~  135 (265)
                      +||+|+....-  -.....++.+.++|+ |||.+++
T Consensus       156 ~fD~iFiDadK--~~Y~~y~~~~l~ll~-~GGviv~  188 (247)
T PLN02589        156 TFDFIFVDADK--DNYINYHKRLIDLVK-VGGVIGY  188 (247)
T ss_pred             cccEEEecCCH--HHhHHHHHHHHHhcC-CCeEEEE
Confidence            89999986320  134567888899999 9999887

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.64  E-value=1.6e-07  Score=83.07  Aligned_cols=65  Identities=20%  Similarity=0.240  Sum_probs=51.5

Q ss_pred             cHHHHHHHHhhCC-CCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC------CCceEEecCC
Q 024647           20 PEELFKFITSKTT-NHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL------PNIRYELTSP   84 (265)
Q Consensus        20 ~~~l~~~l~~~~~-~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~   84 (265)
                      .+.+++++..... .+.++||++||+|.++..+++...+|+|||+++.+++.+++.      .|+.+...++
T Consensus       192 ~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~  263 (362)
T PRK05031        192 NEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSA  263 (362)
T ss_pred             HHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCH
Confidence            4567777766553 235799999999999999999888999999999999988752      3677777554

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=98.63  E-value=1.8e-08  Score=79.66  Aligned_cols=93  Identities=20%  Similarity=0.268  Sum_probs=74.3

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecccccc
Q 024647           33 NHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHW  112 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~  112 (265)
                      .+.++||+|+|.|..|..++..+.+|.++|.|..|+.+.++ .+.+....        + ++...+-.+|+|.|...+.-
T Consensus       112 ~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~k-k~ynVl~~--------~-ew~~t~~k~dli~clNlLDR  181 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKK-KNYNVLTE--------I-EWLQTDVKLDLILCLNLLDR  181 (288)
T ss_pred             CCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhh-cCCceeee--------h-hhhhcCceeehHHHHHHHHh
Confidence            35789999999999999999999999999999999999986 34444331        1 12123346999999988866


Q ss_pred             C-ChhHHHHHHHHHhcCCCcEEEE
Q 024647          113 F-DLPQFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus       113 ~-~~~~~l~~~~~~Lk~pgG~l~~  135 (265)
                      . ++-++++.+..+|+|.+|.+++
T Consensus       182 c~~p~kLL~Di~~vl~psngrviv  205 (288)
T KOG3987|consen  182 CFDPFKLLEDIHLVLAPSNGRVIV  205 (288)
T ss_pred             hcChHHHHHHHHHHhccCCCcEEE
Confidence            5 8999999999999933898776

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.61  E-value=1.9e-07  Score=74.44  Aligned_cols=124  Identities=17%  Similarity=0.170  Sum_probs=72.7

Q ss_pred             HHHHHHHhhC--C--CCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcCCCceEEecCCccc--hhhhh
Q 024647           22 ELFKFITSKT--T--NHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKLPNIRYELTSPAMS--IAELE   92 (265)
Q Consensus        22 ~l~~~l~~~~--~--~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~--~~d~~   92 (265)
                      +|.+.+..+.  .  ++.+|||+||++|.++..+.++.   .+|+|+|+.+.     ...+++.+.+++....  ...+.
T Consensus         8 KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----~~~~~~~~i~~d~~~~~~~~~i~   82 (181)
T PF01728_consen    8 KLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----DPLQNVSFIQGDITNPENIKDIR   82 (181)
T ss_dssp             HHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----GS-TTEEBTTGGGEEEEHSHHGG
T ss_pred             HHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----ccccceeeeecccchhhHHHhhh
Confidence            5666666554  2  34899999999999999999998   57999999887     2223343333222110  01222


Q ss_pred             hc-cCCCCceeEEEeccccccC-----Ch-------hHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHhhc
Q 024647           93 QN-VAAQSTVDLVTIAQAMHWF-----DL-------PQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQ  152 (265)
Q Consensus        93 ~~-~~~~~~~Dlv~~~~~~~~~-----~~-------~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~~  152 (265)
                      .. ....+.+|+|+|..+....     |.       ...+.-+...|+ |||.+++-.+..... ..+...+.
T Consensus        83 ~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~-~gG~~v~K~~~~~~~-~~~~~~l~  153 (181)
T PF01728_consen   83 KLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLK-PGGTFVIKVFKGPEI-EELIYLLK  153 (181)
T ss_dssp             GSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHC-TTEEEEEEESSSTTS-HHHHHHHH
T ss_pred             hhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhc-CCCEEEEEeccCccH-HHHHHHHH
Confidence            22 1123689999998854433     21       134556678899 999999877765554 34444333

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.59  E-value=1.3e-07  Score=77.98  Aligned_cols=88  Identities=14%  Similarity=0.141  Sum_probs=62.6

Q ss_pred             HHHHHHHHhh--CCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC-CCceEEecCCccchhhhhhccCC
Q 024647           21 EELFKFITSK--TTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL-PNIRYELTSPAMSIAELEQNVAA   97 (265)
Q Consensus        21 ~~l~~~l~~~--~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~d~~~~~~~   97 (265)
                      +.+++.|...  .++++.|||+|.|||.+|..|.+.+++|+++|+++.|+++..++ .+... ..-.++..+|+-..++ 
T Consensus        44 p~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~-~~kLqV~~gD~lK~d~-  121 (315)
T KOG0820|consen   44 PLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPK-SGKLQVLHGDFLKTDL-  121 (315)
T ss_pred             HHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCc-cceeeEEecccccCCC-
Confidence            3445555444  36789999999999999999999999999999999999988753 11111 1122223377766543 


Q ss_pred             CCceeEEEeccccc
Q 024647           98 QSTVDLVTIAQAMH  111 (265)
Q Consensus        98 ~~~~Dlv~~~~~~~  111 (265)
                       ..||.++++....
T Consensus       122 -P~fd~cVsNlPyq  134 (315)
T KOG0820|consen  122 -PRFDGCVSNLPYQ  134 (315)
T ss_pred             -cccceeeccCCcc
Confidence             3699999976544

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.58  E-value=4.3e-07  Score=72.76  Aligned_cols=120  Identities=16%  Similarity=0.213  Sum_probs=83.1

Q ss_pred             hCCCCcHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCC---cEEEEcCCHHHHHHHHcCCCceEEecCCccchh
Q 024647           15 TRPNYPEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFE---NVIGTETSPKQIEFATKLPNIRYELTSPAMSIA   89 (265)
Q Consensus        15 ~rp~y~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~   89 (265)
                      .|+.|  ++++....+.  .++++|+|+||-+|..++.+++...   +|+|+|+.|.     ...+++.+++++.+-. .
T Consensus        27 SRAa~--KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-----~~~~~V~~iq~d~~~~-~   98 (205)
T COG0293          27 SRAAY--KLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-----KPIPGVIFLQGDITDE-D   98 (205)
T ss_pred             chHHH--HHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-----ccCCCceEEeeeccCc-c
Confidence            46666  7777766653  5789999999999999999998764   3999999776     3457888888654321 0


Q ss_pred             hhhhcc--CCCCceeEEEecc----ccccC-Chh-------HHHHHHHHHhcCCCcEEEEEecCCCCC
Q 024647           90 ELEQNV--AAQSTVDLVTIAQ----AMHWF-DLP-------QFYNQVKWVLKKPNGVIATWCYTVPEV  143 (265)
Q Consensus        90 d~~~~~--~~~~~~Dlv~~~~----~~~~~-~~~-------~~l~~~~~~Lk~pgG~l~~~~~~~~~~  143 (265)
                      ..+++.  +...++|+|++..    .-+|. |..       .++.-+..+|+ |||.+++-.+.....
T Consensus        99 ~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~-~~G~fv~K~fqg~~~  165 (205)
T COG0293          99 TLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLK-PGGSFVAKVFQGEDF  165 (205)
T ss_pred             HHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeC-CCCeEEEEEEeCCCH
Confidence            111111  3445689999865    33444 533       46677788999 999999877664443

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.55  E-value=2.4e-07  Score=73.95  Aligned_cols=123  Identities=15%  Similarity=0.111  Sum_probs=79.0

Q ss_pred             hhhCCCCcHHHHHH----HHhhCCCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC-------CCceEE
Q 024647           13 AETRPNYPEELFKF----ITSKTTNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL-------PNIRYE   80 (265)
Q Consensus        13 ~~~rp~y~~~l~~~----l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~   80 (265)
                      ...||+ ++.+-+.    |....-++.+|||+-||+|.++...+.+++ +|+.||.++..++..++.       ..+...
T Consensus        19 ~~~RPT-~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~   97 (183)
T PF03602_consen   19 DNTRPT-TDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVI   97 (183)
T ss_dssp             -TS-SS-SHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEE
T ss_pred             CCcCCC-cHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeee
Confidence            357887 5555444    443313568999999999999999999987 699999999999987752       124555


Q ss_pred             ecCCccchhhhhhccCCCCceeEEEeccccccCC-hhHHHHHHH--HHhcCCCcEEEEEecCC
Q 024647           81 LTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFD-LPQFYNQVK--WVLKKPNGVIATWCYTV  140 (265)
Q Consensus        81 ~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~-~~~~l~~~~--~~Lk~pgG~l~~~~~~~  140 (265)
                      ..++.   ..+........+||+|++.-....-. ...++..+.  .+|+ ++|.+++.....
T Consensus        98 ~~d~~---~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~-~~~~ii~E~~~~  156 (183)
T PF03602_consen   98 KGDAF---KFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLN-EDGLIIIEHSKK  156 (183)
T ss_dssp             ESSHH---HHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEE-EEEEEEEEEETT
T ss_pred             ccCHH---HHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCC-CCEEEEEEecCC
Confidence            53321   11222222467899999987666554 367777776  7899 899999866543

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.53  E-value=6.7e-07  Score=79.38  Aligned_cols=109  Identities=14%  Similarity=0.112  Sum_probs=77.4

Q ss_pred             CCCcHHHHHHHHhhCC---CCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC------CCceEEecCCc
Q 024647           17 PNYPEELFKFITSKTT---NHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL------PNIRYELTSPA   85 (265)
Q Consensus        17 p~y~~~l~~~l~~~~~---~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~   85 (265)
                      .....++...+.....   +..+|||++||+|..+..++....  +|+++|+++..++.+++.      .++.+..    
T Consensus        38 ~~~nrdl~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~----  113 (382)
T PRK04338         38 MELNRDISVLVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFN----  113 (382)
T ss_pred             ccchhhHHHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEh----
Confidence            3445566555555432   235899999999999999987654  799999999999988752      2233333    


Q ss_pred             cchhhhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEE
Q 024647           86 MSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATW  136 (265)
Q Consensus        86 ~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~  136 (265)
                         +|+..+....+.||+|++.-.   -.+..+++.+.+.++ +||.+.+.
T Consensus       114 ---~Da~~~l~~~~~fD~V~lDP~---Gs~~~~l~~al~~~~-~~gilyvS  157 (382)
T PRK04338        114 ---KDANALLHEERKFDVVDIDPF---GSPAPFLDSAIRSVK-RGGLLCVT  157 (382)
T ss_pred             ---hhHHHHHhhcCCCCEEEECCC---CCcHHHHHHHHHHhc-CCCEEEEE
Confidence               666554211457999998631   234678888888899 99999886

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.53  E-value=4.7e-07  Score=75.36  Aligned_cols=85  Identities=12%  Similarity=0.066  Sum_probs=65.5

Q ss_pred             cHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC----CCceEEecCCccchhhhhh
Q 024647           20 PEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL----PNIRYELTSPAMSIAELEQ   93 (265)
Q Consensus        20 ~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~d~~~   93 (265)
                      .+.+++.+....  .++++|||||+|.|.+|..|++++.+|+++|+++.+++..++.    .|+..+.       +|+-.
T Consensus        15 d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~-------~DaLk   87 (259)
T COG0030          15 DKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVIN-------GDALK   87 (259)
T ss_pred             CHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEe-------Cchhc
Confidence            345566666554  3568999999999999999999999999999999999988763    4566666       77766


Q ss_pred             ccCCCC-ceeEEEeccccc
Q 024647           94 NVAAQS-TVDLVTIAQAMH  111 (265)
Q Consensus        94 ~~~~~~-~~Dlv~~~~~~~  111 (265)
                      .+++.- .++.|+++...+
T Consensus        88 ~d~~~l~~~~~vVaNlPY~  106 (259)
T COG0030          88 FDFPSLAQPYKVVANLPYN  106 (259)
T ss_pred             CcchhhcCCCEEEEcCCCc
Confidence            665532 578899885433

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.51  E-value=3.4e-07  Score=73.95  Aligned_cols=102  Identities=20%  Similarity=0.184  Sum_probs=77.4

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC--------CCceEEecCCccchhhhhhc--cCCCCc
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL--------PNIRYELTSPAMSIAELEQN--VAAQST  100 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~d~~~~--~~~~~~  100 (265)
                      +.+.+|||...|-|..+...+++++ +|+.+|.+|..++.|+-.        .++..+.       +|..+.  .+++++
T Consensus       133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iil-------GD~~e~V~~~~D~s  205 (287)
T COG2521         133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIIL-------GDAYEVVKDFDDES  205 (287)
T ss_pred             ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEec-------ccHHHHHhcCCccc
Confidence            3578999999999999999999999 899999999999988743        2344444       565543  268899


Q ss_pred             eeEEEeccc-cc---cCChhHHHHHHHHHhcCCCcEEEEEecCCC
Q 024647          101 VDLVTIAQA-MH---WFDLPQFYNQVKWVLKKPNGVIATWCYTVP  141 (265)
Q Consensus       101 ~Dlv~~~~~-~~---~~~~~~~l~~~~~~Lk~pgG~l~~~~~~~~  141 (265)
                      ||+|+-.-. +.   .+=...+..+++|+|+ |||.++.+...+.
T Consensus       206 fDaIiHDPPRfS~AgeLYseefY~El~RiLk-rgGrlFHYvG~Pg  249 (287)
T COG2521         206 FDAIIHDPPRFSLAGELYSEEFYRELYRILK-RGGRLFHYVGNPG  249 (287)
T ss_pred             cceEeeCCCccchhhhHhHHHHHHHHHHHcC-cCCcEEEEeCCCC
Confidence            999985321 10   1123479999999999 9999988766543

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=6.3e-07  Score=71.26  Aligned_cols=111  Identities=19%  Similarity=0.294  Sum_probs=81.0

Q ss_pred             CcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhc----CCcEEEEcCCHHHHHHHHcC--C-------CceEEecCCc
Q 024647           19 YPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGI----FENVIGTETSPKQIEFATKL--P-------NIRYELTSPA   85 (265)
Q Consensus        19 y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~--~-------~~~~~~~~~~   85 (265)
                      ....+++.|..++.++-+.||+|.|+|.++..++..    +....|||.-++.++.+++.  .       -..+..+...
T Consensus        68 mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~  147 (237)
T KOG1661|consen   68 MHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELS  147 (237)
T ss_pred             HHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceE
Confidence            345678888888889999999999999999988753    33459999999999998752  0       1112222333


Q ss_pred             cchhhhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEE
Q 024647           86 MSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus        86 ~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~  135 (265)
                      ++.+|-.....+..+||.|.+..     +....-+++...|+ +||.+++
T Consensus       148 ivvGDgr~g~~e~a~YDaIhvGA-----aa~~~pq~l~dqL~-~gGrlli  191 (237)
T KOG1661|consen  148 IVVGDGRKGYAEQAPYDAIHVGA-----AASELPQELLDQLK-PGGRLLI  191 (237)
T ss_pred             EEeCCccccCCccCCcceEEEcc-----CccccHHHHHHhhc-cCCeEEE
Confidence            33466555555778999999873     33467788888899 8998887

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=98.46  E-value=9.1e-07  Score=75.85  Aligned_cols=93  Identities=20%  Similarity=0.272  Sum_probs=74.5

Q ss_pred             CCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc-C-CCceEEecCCccchhhh-hhccCCCCceeEEEecccc
Q 024647           34 HELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK-L-PNIRYELTSPAMSIAEL-EQNVAAQSTVDLVTIAQAM  110 (265)
Q Consensus        34 ~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-~-~~~~~~~~~~~~~~~d~-~~~~~~~~~~Dlv~~~~~~  110 (265)
                      -...+|+|.|.|..+..+..++++|-+++++...+-.++. + +++..+.       +|+ ++.  |  +-|+|+..+++
T Consensus       178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~-------gdmfq~~--P--~~daI~mkWiL  246 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVA-------GDMFQDT--P--KGDAIWMKWIL  246 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceec-------ccccccC--C--CcCeEEEEeec
Confidence            4678999999999999999999999999999998876553 5 5666655       443 333  3  35799999999


Q ss_pred             ccC-C--hhHHHHHHHHHhcCCCcEEEEEec
Q 024647          111 HWF-D--LPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       111 ~~~-~--~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      |.. |  ..++|++|+..|+ |||.+++...
T Consensus       247 hdwtDedcvkiLknC~~sL~-~~GkIiv~E~  276 (342)
T KOG3178|consen  247 HDWTDEDCVKILKNCKKSLP-PGGKIIVVEN  276 (342)
T ss_pred             ccCChHHHHHHHHHHHHhCC-CCCEEEEEec
Confidence            755 4  5689999999999 9999988665

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.46  E-value=3e-07  Score=77.96  Aligned_cols=99  Identities=21%  Similarity=0.205  Sum_probs=67.4

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccccc
Q 024647           33 NHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMH  111 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~  111 (265)
                      .++.|||+|||+|.++...++.++ +|.+||.| +|.+.|+++-..+.....+.++.+.++++.+| +.+|+|++--.-.
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG~  254 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMGY  254 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccchh
Confidence            467899999999999999999987 69999986 57888876311111111222233666777554 6899999876444


Q ss_pred             cCChhH---HHHHHHHHhcCCCcEEE
Q 024647          112 WFDLPQ---FYNQVKWVLKKPNGVIA  134 (265)
Q Consensus       112 ~~~~~~---~l~~~~~~Lk~pgG~l~  134 (265)
                      .+-.++   ..-.+++.|+ |+|...
T Consensus       255 mL~NERMLEsYl~Ark~l~-P~GkMf  279 (517)
T KOG1500|consen  255 MLVNERMLESYLHARKWLK-PNGKMF  279 (517)
T ss_pred             hhhhHHHHHHHHHHHhhcC-CCCccc
Confidence            332233   3335579999 999865

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.45  E-value=1.8e-07  Score=75.40  Aligned_cols=97  Identities=16%  Similarity=0.228  Sum_probs=65.6

Q ss_pred             HHHhhCCCCCeEEEEcCCcchhHHHHHh--cCCcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccC
Q 024647           26 FITSKTTNHELAWDVGTGSGQAAASLSG--IFENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVA   96 (265)
Q Consensus        26 ~l~~~~~~~~~vlDvGcG~G~~~~~l~~--~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~   96 (265)
                      ++.....++.+|+|+.||-|.++..+++  ....|+++|++|..++.+++.       ..+....       +|...+..
T Consensus        94 Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~-------~D~~~~~~  166 (200)
T PF02475_consen   94 RIANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVIN-------GDAREFLP  166 (200)
T ss_dssp             HHHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEE-------S-GGG---
T ss_pred             HHHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEc-------CCHHHhcC
Confidence            4555567889999999999999999998  566799999999999987751       2344455       67666643


Q ss_pred             CCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEE
Q 024647           97 AQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIA  134 (265)
Q Consensus        97 ~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~  134 (265)
                       .+.+|.|+++..-   ....++..+.++++ +||++-
T Consensus       167 -~~~~drvim~lp~---~~~~fl~~~~~~~~-~~g~ih  199 (200)
T PF02475_consen  167 -EGKFDRVIMNLPE---SSLEFLDAALSLLK-EGGIIH  199 (200)
T ss_dssp             -TT-EEEEEE--TS---SGGGGHHHHHHHEE-EEEEEE
T ss_pred             -ccccCEEEECChH---HHHHHHHHHHHHhc-CCcEEE
Confidence             7889999987421   23468889999999 888763

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.45  E-value=1.5e-06  Score=76.71  Aligned_cols=107  Identities=12%  Similarity=0.150  Sum_probs=79.0

Q ss_pred             HHHhhCCCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC--------CCceEEecCCccchhhhhh---
Q 024647           26 FITSKTTNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL--------PNIRYELTSPAMSIAELEQ---   93 (265)
Q Consensus        26 ~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~d~~~---   93 (265)
                      ++..... +++||++=|=||.++...+..++ +|+.||.|...++-|++.        ..+.+++       +|+-+   
T Consensus       211 ~l~~~~~-GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~-------~Dvf~~l~  282 (393)
T COG1092         211 ALGELAA-GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIV-------GDVFKWLR  282 (393)
T ss_pred             HHhhhcc-CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeeh-------hhHHHHHH
Confidence            3444444 78999999999999999999998 899999999999999862        2245555       55422   


Q ss_pred             -ccCCCCceeEEEecc-ccc------c--C-ChhHHHHHHHHHhcCCCcEEEEEecCCC
Q 024647           94 -NVAAQSTVDLVTIAQ-AMH------W--F-DLPQFYNQVKWVLKKPNGVIATWCYTVP  141 (265)
Q Consensus        94 -~~~~~~~~Dlv~~~~-~~~------~--~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~~  141 (265)
                       ..-...+||+|+..- ++-      |  . |..+++..+.++|+ |||++++.+....
T Consensus       283 ~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~-pgG~l~~~s~~~~  340 (393)
T COG1092         283 KAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLA-PGGTLVTSSCSRH  340 (393)
T ss_pred             HHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcC-CCCEEEEEecCCc
Confidence             223445899999854 111      1  1 34578889999999 9999998766543

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=98.44  E-value=2.4e-06  Score=65.25  Aligned_cols=96  Identities=22%  Similarity=0.317  Sum_probs=68.8

Q ss_pred             EEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcCC---C---ceEEecCCccchhhhhh--ccCCC-CceeEE
Q 024647           37 AWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKLP---N---IRYELTSPAMSIAELEQ--NVAAQ-STVDLV  104 (265)
Q Consensus        37 vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~---~---~~~~~~~~~~~~~d~~~--~~~~~-~~~Dlv  104 (265)
                      ++|+|||+|..+ .+....   ..++++|+++.++..++...   .   +.+..       .+...  .++.. ..+|++
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~d~~  123 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVV-------ADALGGVLPFEDSASFDLV  123 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEE-------eccccCCCCCCCCCceeEE
Confidence            999999999976 444333   37899999999999855321   1   24444       34333  55555 489999


Q ss_pred             EeccccccCChhHHHHHHHHHhcCCCcEEEEEecCCC
Q 024647          105 TIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTVP  141 (265)
Q Consensus       105 ~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~~~  141 (265)
                      .+....|+.+....+.++.++|+ |+|.+++......
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~l~-~~g~~~~~~~~~~  159 (257)
T COG0500         124 ISLLVLHLLPPAKALRELLRVLK-PGGRLVLSDLLRD  159 (257)
T ss_pred             eeeeehhcCCHHHHHHHHHHhcC-CCcEEEEEeccCC
Confidence            55556666677889999999999 9999988666533

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.42  E-value=2.7e-06  Score=72.31  Aligned_cols=108  Identities=15%  Similarity=0.119  Sum_probs=66.3

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcCC-CceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           33 NHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKLP-NIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      .+.+|||+|||+|..+.++.+.+   .+++++|.|+.|++.++.+. +..-.. ...+. .....-..+..+.|+|++++
T Consensus        33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~-~~~~~-~~~~~~~~~~~~~DLvi~s~  110 (274)
T PF09243_consen   33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNR-NAEWR-RVLYRDFLPFPPDDLVIASY  110 (274)
T ss_pred             CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccc-cchhh-hhhhcccccCCCCcEEEEeh
Confidence            45789999999999888777654   46999999999999887631 110000 00000 11111011223349999999


Q ss_pred             ccccCChh---HHHHHHHHHhcCCCcEEEEEecCCCCCCh
Q 024647          109 AMHWFDLP---QFYNQVKWVLKKPNGVIATWCYTVPEVNV  145 (265)
Q Consensus       109 ~~~~~~~~---~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~  145 (265)
                      ++..+...   .+++.+.+.+.   +.|+++.++.+.-..
T Consensus       111 ~L~EL~~~~r~~lv~~LW~~~~---~~LVlVEpGt~~Gf~  147 (274)
T PF09243_consen  111 VLNELPSAARAELVRSLWNKTA---PVLVLVEPGTPAGFR  147 (274)
T ss_pred             hhhcCCchHHHHHHHHHHHhcc---CcEEEEcCCChHHHH
Confidence            99888333   34555555444   388888887554433

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=98.38  E-value=1.8e-06  Score=74.25  Aligned_cols=96  Identities=11%  Similarity=-0.002  Sum_probs=70.0

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccccc
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMH  111 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~  111 (265)
                      .+++++||+||++|.+|..+++++.+|++||.++ |-......+++.....+.      +...+ +.+++|+++|..+  
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~-l~~~L~~~~~V~h~~~d~------fr~~p-~~~~vDwvVcDmv--  279 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP-MAQSLMDTGQVEHLRADG------FKFRP-PRKNVDWLVCDMV--  279 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh-cCHhhhCCCCEEEEeccC------cccCC-CCCCCCEEEEecc--
Confidence            4678999999999999999999999999999655 445555557788877432      22222 2678999999854  


Q ss_pred             cCChhHHHHHHHHHhcCCC-cEEEEEecC
Q 024647          112 WFDLPQFYNQVKWVLKKPN-GVIATWCYT  139 (265)
Q Consensus       112 ~~~~~~~l~~~~~~Lk~pg-G~l~~~~~~  139 (265)
                       ..|..+++-+.+.|. .| ..-++++..
T Consensus       280 -e~P~rva~lm~~Wl~-~g~cr~aIfnLK  306 (357)
T PRK11760        280 -EKPARVAELMAQWLV-NGWCREAIFNLK  306 (357)
T ss_pred             -cCHHHHHHHHHHHHh-cCcccEEEEEEE
Confidence             256788888899987 44 223444544

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.37  E-value=6.2e-07  Score=67.14  Aligned_cols=88  Identities=18%  Similarity=0.243  Sum_probs=63.3

Q ss_pred             CCCCcHHHHHHHHhhCC--CCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC-----CCceEEecCCccc
Q 024647           16 RPNYPEELFKFITSKTT--NHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL-----PNIRYELTSPAMS   87 (265)
Q Consensus        16 rp~y~~~l~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~   87 (265)
                      ||.....++..+.+...  .++.++|+|||.|.+..+.+-..+ .|+|+|++|+.++.+++.     -++++.+      
T Consensus        29 ~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLq------  102 (185)
T KOG3420|consen   29 RPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQ------  102 (185)
T ss_pred             cHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheee------
Confidence            55555556666655443  678899999999999977765555 499999999999998863     2445555      


Q ss_pred             hhhhhhccCCCCceeEEEecccc
Q 024647           88 IAELEQNVAAQSTVDLVTIAQAM  110 (265)
Q Consensus        88 ~~d~~~~~~~~~~~Dlv~~~~~~  110 (265)
                       .|+.++-+..+.||.++.+..+
T Consensus       103 -cdildle~~~g~fDtaviNppF  124 (185)
T KOG3420|consen  103 -CDILDLELKGGIFDTAVINPPF  124 (185)
T ss_pred             -eeccchhccCCeEeeEEecCCC
Confidence             4555554566789998887654

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.37  E-value=1.2e-05  Score=67.47  Aligned_cols=99  Identities=17%  Similarity=0.240  Sum_probs=77.3

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCC----cEEEEcCCHHHHHHHHc------CCCc-eEEecCCccchhhhhhccCCCCc
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFE----NVIGTETSPKQIEFATK------LPNI-RYELTSPAMSIAELEQNVAAQST  100 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~----~v~~vD~s~~~~~~a~~------~~~~-~~~~~~~~~~~~d~~~~~~~~~~  100 (265)
                      ..+-+||||.||.|.......+..+    +|+..|.|+..++..+.      +.++ +|.+.++    -|.+++..-...
T Consensus       134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dA----fd~~~l~~l~p~  209 (311)
T PF12147_consen  134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDA----FDRDSLAALDPA  209 (311)
T ss_pred             CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCC----CCHhHhhccCCC
Confidence            4567899999999999988876654    49999999999998765      3565 8888776    444444433445


Q ss_pred             eeEEEeccccccC-Chh---HHHHHHHHHhcCCCcEEEE
Q 024647          101 VDLVTIAQAMHWF-DLP---QFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus       101 ~Dlv~~~~~~~~~-~~~---~~l~~~~~~Lk~pgG~l~~  135 (265)
                      .++++++..+..| |..   ..++-+.+++. |||.++.
T Consensus       210 P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~-pgG~lIy  247 (311)
T PF12147_consen  210 PTLAIVSGLYELFPDNDLVRRSLAGLARALE-PGGYLIY  247 (311)
T ss_pred             CCEEEEecchhhCCcHHHHHHHHHHHHHHhC-CCcEEEE
Confidence            7999999888888 532   47888999999 9999986

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.36  E-value=3.7e-06  Score=67.00  Aligned_cols=91  Identities=22%  Similarity=0.295  Sum_probs=70.7

Q ss_pred             eEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647           36 LAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIA  107 (265)
Q Consensus        36 ~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~  107 (265)
                      +++|||+|.|.-+..++=..+  +++.+|.+..-+...+.      ++|+....       +.+++ +...++||+|++.
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~-------~R~E~-~~~~~~fd~v~aR  122 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVIN-------GRAEE-PEYRESFDVVTAR  122 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEE-------S-HHH-TTTTT-EEEEEEE
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEE-------eeecc-cccCCCccEEEee
Confidence            899999999999999886665  59999999998876653      57888888       45565 4467799999997


Q ss_pred             cccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      -.   .+...++.-+...|+ +||.++++-.
T Consensus       123 Av---~~l~~l~~~~~~~l~-~~G~~l~~KG  149 (184)
T PF02527_consen  123 AV---APLDKLLELARPLLK-PGGRLLAYKG  149 (184)
T ss_dssp             SS---SSHHHHHHHHGGGEE-EEEEEEEEES
T ss_pred             hh---cCHHHHHHHHHHhcC-CCCEEEEEcC
Confidence            43   256788999999999 9999887543

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.36  E-value=2e-06  Score=73.42  Aligned_cols=89  Identities=15%  Similarity=0.168  Sum_probs=64.3

Q ss_pred             hCCCCcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC----CCceEEecCCccc
Q 024647           15 TRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL----PNIRYELTSPAMS   87 (265)
Q Consensus        15 ~rp~y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~   87 (265)
                      +.|...+++++.+.  ..++..+||++||.|..|..+++.+   .+|+|+|.++.|++.+++.    .++.++..+.   
T Consensus         3 H~pVll~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f---   77 (296)
T PRK00050          3 HIPVLLDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNF---   77 (296)
T ss_pred             CccccHHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCH---
Confidence            56777777777774  2456799999999999999999886   4799999999999998753    2566666443   


Q ss_pred             hhhhhhccCC-CCceeEEEeccc
Q 024647           88 IAELEQNVAA-QSTVDLVTIAQA  109 (265)
Q Consensus        88 ~~d~~~~~~~-~~~~Dlv~~~~~  109 (265)
                       .++...... ..++|.|++...
T Consensus        78 -~~l~~~l~~~~~~vDgIl~DLG   99 (296)
T PRK00050         78 -SNLKEVLAEGLGKVDGILLDLG   99 (296)
T ss_pred             -HHHHHHHHcCCCccCEEEECCC
Confidence             222222111 127999999873

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.35  E-value=3.9e-06  Score=75.46  Aligned_cols=115  Identities=22%  Similarity=0.326  Sum_probs=80.4

Q ss_pred             cHHHHHHHHhhCC--CCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhh
Q 024647           20 PEELFKFITSKTT--NHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAEL   91 (265)
Q Consensus        20 ~~~l~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~   91 (265)
                      .+.|+++......  +.+++||+=||.|.++..|+++..+|+|+|+++++++.|++      ..|+.|..+       ++
T Consensus       278 ~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~-------~a  350 (432)
T COG2265         278 AEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAG-------DA  350 (432)
T ss_pred             HHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeC-------CH
Confidence            4556666666553  55789999999999999999999999999999999999875      356788874       44


Q ss_pred             hhccC---CCCceeEEEeccccccCChh------HHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHhh
Q 024647           92 EQNVA---AQSTVDLVTIAQAMHWFDLP------QFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVF  151 (265)
Q Consensus        92 ~~~~~---~~~~~Dlv~~~~~~~~~~~~------~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~  151 (265)
                      ++...   ....+|.|+.       ||+      .+++.+.+ ++ |..++++++ ++.++...+..+.
T Consensus       351 e~~~~~~~~~~~~d~Vvv-------DPPR~G~~~~~lk~l~~-~~-p~~IvYVSC-NP~TlaRDl~~L~  409 (432)
T COG2265         351 EEFTPAWWEGYKPDVVVV-------DPPRAGADREVLKQLAK-LK-PKRIVYVSC-NPATLARDLAILA  409 (432)
T ss_pred             HHHhhhccccCCCCEEEE-------CCCCCCCCHHHHHHHHh-cC-CCcEEEEeC-CHHHHHHHHHHHH
Confidence            44432   2347899996       443      45555555 45 677777755 4445444444433

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.34  E-value=7.7e-06  Score=63.71  Aligned_cols=121  Identities=18%  Similarity=0.301  Sum_probs=79.2

Q ss_pred             HHHhhhCCCCcHHHHHHHHhhC-----CCCCeEEEEcCCcchhHHHHHhcCC---cEEEEcCCHHHHHHHHc-----CCC
Q 024647           10 KQYAETRPNYPEELFKFITSKT-----TNHELAWDVGTGSGQAAASLSGIFE---NVIGTETSPKQIEFATK-----LPN   76 (265)
Q Consensus        10 ~~Y~~~rp~y~~~l~~~l~~~~-----~~~~~vlDvGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~-----~~~   76 (265)
                      +.|.-.-.+|  -+++.|....     ..+..++|||||+|..+..|++...   -+.++|++|.+++...+     ..+
T Consensus        17 dVYEPaEDTF--lLlDaLekd~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~   94 (209)
T KOG3191|consen   17 DVYEPAEDTF--LLLDALEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH   94 (209)
T ss_pred             hccCccchhh--HHHHHHHHHHHHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc
Confidence            4444444444  4555554322     1357799999999999999987643   48899999999886443     123


Q ss_pred             ceEEecCCccchhhhhhccCCCCceeEEEecccc----------ccCC------------hhHHHHHHHHHhcCCCcEEE
Q 024647           77 IRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAM----------HWFD------------LPQFYNQVKWVLKKPNGVIA  134 (265)
Q Consensus        77 ~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~----------~~~~------------~~~~l~~~~~~Lk~pgG~l~  134 (265)
                      +..++       .|+..- +..+++|+++.+-..          +|++            ..+++..+-.+|. |.|.++
T Consensus        95 ~~~V~-------tdl~~~-l~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLS-p~Gv~Y  165 (209)
T KOG3191|consen   95 IDVVR-------TDLLSG-LRNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILS-PRGVFY  165 (209)
T ss_pred             cceee-------hhHHhh-hccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcC-cCceEE
Confidence            34444       555443 345899999986522          2221            2357777888999 999999


Q ss_pred             EEecCCC
Q 024647          135 TWCYTVP  141 (265)
Q Consensus       135 ~~~~~~~  141 (265)
                      +......
T Consensus       166 lv~~~~N  172 (209)
T KOG3191|consen  166 LVALRAN  172 (209)
T ss_pred             eeehhhc
Confidence            8776533

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=98.33  E-value=7.6e-07  Score=78.06  Aligned_cols=111  Identities=21%  Similarity=0.269  Sum_probs=83.9

Q ss_pred             HHhhCCCCCeEEEEcCCcchhHHHHHhcC-CcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEE
Q 024647           27 ITSKTTNHELAWDVGTGSGQAAASLSGIF-ENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVT  105 (265)
Q Consensus        27 l~~~~~~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~  105 (265)
                      +...+.+...++|+|||-|...+.++... .+++|+|.++..+..+....--..+.....++..++.+.++++++||.+.
T Consensus       104 l~~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~  183 (364)
T KOG1269|consen  104 LRESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVR  183 (364)
T ss_pred             HhhcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEE
Confidence            33344566678999999999999998765 68999999999888776421000000011112378888889999999999


Q ss_pred             eccccccC-ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          106 IAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       106 ~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      +..+..+. +...++++++|+++ |||.+++..+
T Consensus       184 ~ld~~~~~~~~~~~y~Ei~rv~k-pGG~~i~~e~  216 (364)
T KOG1269|consen  184 FLEVVCHAPDLEKVYAEIYRVLK-PGGLFIVKEW  216 (364)
T ss_pred             EEeecccCCcHHHHHHHHhcccC-CCceEEeHHH
Confidence            99977766 99999999999999 9999998444

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.32  E-value=7.5e-07  Score=76.91  Aligned_cols=77  Identities=16%  Similarity=0.212  Sum_probs=52.1

Q ss_pred             CCCeEEEEcCCcchhHHHHHhc--CCcEEEEcCCHHHHHHHHcC----C----CceEEe-cCCccchhhhh-hccCCCCc
Q 024647           33 NHELAWDVGTGSGQAAASLSGI--FENVIGTETSPKQIEFATKL----P----NIRYEL-TSPAMSIAELE-QNVAAQST  100 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~----~----~~~~~~-~~~~~~~~d~~-~~~~~~~~  100 (265)
                      +..++||||||+|.+...++.+  ..+++|+|+++.+++.|++.    +    .+.+.. .+.    .++. .+..+.+.
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~----~~i~~~i~~~~~~  189 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDS----KAIFKGIIHKNER  189 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccch----hhhhhcccccCCc
Confidence            4578999999999877777654  45899999999999999852    1    222221 111    1111 11124568


Q ss_pred             eeEEEeccccccC
Q 024647          101 VDLVTIAQAMHWF  113 (265)
Q Consensus       101 ~Dlv~~~~~~~~~  113 (265)
                      ||+|+|+-.+|--
T Consensus       190 fDlivcNPPf~~s  202 (321)
T PRK11727        190 FDATLCNPPFHAS  202 (321)
T ss_pred             eEEEEeCCCCcCc
Confidence            9999999987754

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.31  E-value=1.5e-05  Score=63.06  Aligned_cols=118  Identities=16%  Similarity=0.064  Sum_probs=80.7

Q ss_pred             hhCCCCcHHHHHHHHhhC----CCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC-------CCceEEe
Q 024647           14 ETRPNYPEELFKFITSKT----TNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL-------PNIRYEL   81 (265)
Q Consensus        14 ~~rp~y~~~l~~~l~~~~----~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~   81 (265)
                      ..||+ .+.+-+.+-+.+    -.+.++||+=+|+|.++...+.+++ .++.||.+...+...++.       .+.....
T Consensus        21 ~~RPT-~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~   99 (187)
T COG0742          21 GTRPT-TDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLR   99 (187)
T ss_pred             CcCCC-chHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEe
Confidence            36887 455544444333    3468899999999999999999987 699999999999988752       3344444


Q ss_pred             cCCccchhhhhhc-c--CCCCceeEEEeccccccC--ChhHHHHH--HHHHhcCCCcEEEEEecCC
Q 024647           82 TSPAMSIAELEQN-V--AAQSTVDLVTIAQAMHWF--DLPQFYNQ--VKWVLKKPNGVIATWCYTV  140 (265)
Q Consensus        82 ~~~~~~~~d~~~~-~--~~~~~~Dlv~~~~~~~~~--~~~~~l~~--~~~~Lk~pgG~l~~~~~~~  140 (265)
                             .|+... .  ...++||+|+..-.+++-  +....+..  -...|+ |+|.+++.....
T Consensus       100 -------~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~-~~~~iv~E~~~~  157 (187)
T COG0742         100 -------NDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLK-PGALIVVEHDKD  157 (187)
T ss_pred             -------ecHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcC-CCcEEEEEeCCC
Confidence                   333322 1  122359999998887743  33444444  456799 999999866543

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.26  E-value=6.6e-06  Score=65.49  Aligned_cols=103  Identities=19%  Similarity=0.213  Sum_probs=68.8

Q ss_pred             CcHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCC-----------cEEEEcCCHHHHHHHHcC-------CCce
Q 024647           19 YPEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFE-----------NVIGTETSPKQIEFATKL-------PNIR   78 (265)
Q Consensus        19 y~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~-----------~v~~vD~s~~~~~~a~~~-------~~~~   78 (265)
                      ..+.+...|....  .++..+||--||+|++....+..+.           +++|+|+++.+++.++..       ..+.
T Consensus        12 L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~   91 (179)
T PF01170_consen   12 LRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYID   91 (179)
T ss_dssp             S-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEE
T ss_pred             CCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceE
Confidence            3455655555544  4667899999999999988765433           277999999999988752       1244


Q ss_pred             EEecCCccchhhhhhccCCCCceeEEEeccccccC-C--------hhHHHHHHHHHhcCC
Q 024647           79 YELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-D--------LPQFYNQVKWVLKKP  129 (265)
Q Consensus        79 ~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~--------~~~~l~~~~~~Lk~p  129 (265)
                      +.+       .|+..+++.++++|.|+++...--- .        ...+++++.++|+ +
T Consensus        92 ~~~-------~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~-~  143 (179)
T PF01170_consen   92 FIQ-------WDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLK-P  143 (179)
T ss_dssp             EEE---------GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHST-T
T ss_pred             EEe-------cchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCC-C
Confidence            555       7788887777899999998754322 2        1257888899999 7

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.23  E-value=1.5e-05  Score=72.51  Aligned_cols=100  Identities=14%  Similarity=0.260  Sum_probs=71.3

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhcc-CCCCce
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQNV-AAQSTV  101 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~~-~~~~~~  101 (265)
                      .++.+|||++||+|.=|..+++..   ..|+++|+++..++.+++      ..|+....       .|...+. ...+.|
T Consensus       112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~-------~D~~~~~~~~~~~f  184 (470)
T PRK11933        112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTH-------FDGRVFGAALPETF  184 (470)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEe-------Cchhhhhhhchhhc
Confidence            467899999999999999999875   369999999999887764      24555544       3433332 223579


Q ss_pred             eEEEeccc------c--------ccC--C-------hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          102 DLVTIAQA------M--------HWF--D-------LPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       102 Dlv~~~~~------~--------~~~--~-------~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      |.|++.-.      +        .|.  +       ....+..+.++|| |||+|+..+..
T Consensus       185 D~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lk-pGG~LVYSTCT  244 (470)
T PRK11933        185 DAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALK-PGGTLVYSTCT  244 (470)
T ss_pred             CeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcC-CCcEEEEECCC
Confidence            99995331      1        121  0       1357889999999 99999887765

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.23  E-value=4.3e-06  Score=73.65  Aligned_cols=65  Identities=20%  Similarity=0.239  Sum_probs=49.0

Q ss_pred             cHHHHHHHHhhCC-CCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc------CCCceEEecCC
Q 024647           20 PEELFKFITSKTT-NHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK------LPNIRYELTSP   84 (265)
Q Consensus        20 ~~~l~~~l~~~~~-~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~   84 (265)
                      .+.+++++....+ .+..+||+-||.|.++..|++.+.+|+|||+++.+++.|+.      ..|+.|...++
T Consensus       182 ~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~  253 (352)
T PF05958_consen  182 NEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA  253 (352)
T ss_dssp             HHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred             HHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence            4566777666654 23479999999999999999999999999999999998875      36888888655

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.19  E-value=6.8e-06  Score=69.50  Aligned_cols=99  Identities=13%  Similarity=0.098  Sum_probs=71.0

Q ss_pred             cHHHHHHHHhhCC--CCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc----CCCceEEecCCccchhhhhh
Q 024647           20 PEELFKFITSKTT--NHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK----LPNIRYELTSPAMSIAELEQ   93 (265)
Q Consensus        20 ~~~l~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~----~~~~~~~~~~~~~~~~d~~~   93 (265)
                      .+.+++.+.+...  ++..|||+|+|+|.+|..|.+.+.+++++|+++.+++..++    .+++..+.       +|+..
T Consensus        15 ~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~-------~D~l~   87 (262)
T PF00398_consen   15 DPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASNPNVEVIN-------GDFLK   87 (262)
T ss_dssp             HHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTCSSEEEEE-------S-TTT
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhcccceeee-------cchhc
Confidence            4566666666543  67899999999999999999999999999999999998876    35777777       66666


Q ss_pred             ccCCC---CceeEEEeccccccCChhHHHHHHHHHhc
Q 024647           94 NVAAQ---STVDLVTIAQAMHWFDLPQFYNQVKWVLK  127 (265)
Q Consensus        94 ~~~~~---~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk  127 (265)
                      +..+.   +...+|+++...  .-...++.++...-+
T Consensus        88 ~~~~~~~~~~~~~vv~NlPy--~is~~il~~ll~~~~  122 (262)
T PF00398_consen   88 WDLYDLLKNQPLLVVGNLPY--NISSPILRKLLELYR  122 (262)
T ss_dssp             SCGGGHCSSSEEEEEEEETG--TGHHHHHHHHHHHGG
T ss_pred             cccHHhhcCCceEEEEEecc--cchHHHHHHHhhccc
Confidence            65443   456677776443  222346666665434

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.12  E-value=4.1e-05  Score=66.21  Aligned_cols=102  Identities=11%  Similarity=0.154  Sum_probs=68.7

Q ss_pred             HhhCCCCCeEEEEcCCcchhHHHHHhcC------CcEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhh--
Q 024647           28 TSKTTNHELAWDVGTGSGQAAASLSGIF------ENVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQ--   93 (265)
Q Consensus        28 ~~~~~~~~~vlDvGcG~G~~~~~l~~~~------~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~--   93 (265)
                      ....+++..++|+|||.|.=+..|.+..      ..++++|+|..+++.+..      .+.+.+...-     +|..+  
T Consensus        71 a~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~-----gdy~~~l  145 (319)
T TIGR03439        71 AASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLL-----GTYDDGL  145 (319)
T ss_pred             HHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEE-----ecHHHHH
Confidence            3344666789999999999888876543      359999999999987653      2445443211     44332  


Q ss_pred             --ccC--CCCceeEEEe-ccccccCChh---HHHHHHHH-HhcCCCcEEEE
Q 024647           94 --NVA--AQSTVDLVTI-AQAMHWFDLP---QFYNQVKW-VLKKPNGVIAT  135 (265)
Q Consensus        94 --~~~--~~~~~Dlv~~-~~~~~~~~~~---~~l~~~~~-~Lk~pgG~l~~  135 (265)
                        ++.  ......+++. ..++..+++.   .+++++.+ .|+ |||.|++
T Consensus       146 ~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~-~~d~lLi  195 (319)
T TIGR03439       146 AWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALS-PSDSFLI  195 (319)
T ss_pred             hhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCC-CCCEEEE
Confidence              221  1223455554 4588888654   58889999 999 8998876

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=98.11  E-value=3.5e-05  Score=62.37  Aligned_cols=120  Identities=23%  Similarity=0.230  Sum_probs=79.9

Q ss_pred             HHhhhCCCCcHHHHHHHHhhC-----CCCCeEEEEcCCcchhHHHHHhcCC---cEEEEcCCHHH----HHHHHcCCCce
Q 024647           11 QYAETRPNYPEELFKFITSKT-----TNHELAWDVGTGSGQAAASLSGIFE---NVIGTETSPKQ----IEFATKLPNIR   78 (265)
Q Consensus        11 ~Y~~~rp~y~~~l~~~l~~~~-----~~~~~vlDvGcG~G~~~~~l~~~~~---~v~~vD~s~~~----~~~a~~~~~~~   78 (265)
                      .|..+.| |-.+|...+....     .++.+||-+|+.+|+...++++...   .|.+||.|+..    +..|++++|+-
T Consensus        47 eYR~W~P-~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIi  125 (229)
T PF01269_consen   47 EYRVWNP-FRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNII  125 (229)
T ss_dssp             EEEEE-T-TT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEE
T ss_pred             ceeecCc-hhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCcee
Confidence            3555666 4678888876543     4678999999999999999998754   69999999954    55677789987


Q ss_pred             EEecCCccchhhhhhccCCCCceeEEEeccccccCChh-HHHHHHHHHhcCCCcEEEEEec
Q 024647           79 YELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLP-QFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        79 ~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~-~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      =+..+++    --+....--+.+|+|++.-+  ..+.. -++.++..-|| +||.+++..-
T Consensus       126 PIl~DAr----~P~~Y~~lv~~VDvI~~DVa--Qp~Qa~I~~~Na~~fLk-~gG~~~i~iK  179 (229)
T PF01269_consen  126 PILEDAR----HPEKYRMLVEMVDVIFQDVA--QPDQARIAALNARHFLK-PGGHLIISIK  179 (229)
T ss_dssp             EEES-TT----SGGGGTTTS--EEEEEEE-S--STTHHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred             eeeccCC----ChHHhhcccccccEEEecCC--ChHHHHHHHHHHHhhcc-CCcEEEEEEe
Confidence            6664431    11222223358999998744  12333 46778888999 9999987543

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.08  E-value=1.4e-05  Score=67.92  Aligned_cols=109  Identities=16%  Similarity=0.231  Sum_probs=71.6

Q ss_pred             HHHHhhCCCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC--------CCceEEecCCccchhhhhhcc
Q 024647           25 KFITSKTTNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL--------PNIRYELTSPAMSIAELEQNV   95 (265)
Q Consensus        25 ~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~d~~~~~   95 (265)
                      .++..+ .++.+|||+=|=||.++...+..++ +|+.||.|..+++.+++.        ..++++..++.   ..+..+.
T Consensus       116 ~~v~~~-~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf---~~l~~~~  191 (286)
T PF10672_consen  116 KWVRKY-AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVF---KFLKRLK  191 (286)
T ss_dssp             HHHHHH-CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HH---HHHHHHH
T ss_pred             HHHHHH-cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHH---HHHHHHh
Confidence            344444 4568999999999999999988887 699999999999988751        35667774431   1112221


Q ss_pred             CCCCceeEEEecc-ccc--cC----ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           96 AAQSTVDLVTIAQ-AMH--WF----DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        96 ~~~~~~Dlv~~~~-~~~--~~----~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                       ..++||+|++.- ++-  -+    +..+++..+.++|+ |||.|++....
T Consensus       192 -~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~-~gG~l~~~scs  240 (286)
T PF10672_consen  192 -KGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLK-PGGLLLTCSCS  240 (286)
T ss_dssp             -HTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEE-EEEEEEEEE--
T ss_pred             -cCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcC-CCCEEEEEcCC
Confidence             346899999854 111  11    34568889999999 99998865554

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.07  E-value=4e-05  Score=62.13  Aligned_cols=96  Identities=17%  Similarity=0.266  Sum_probs=71.8

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHc-------CCCceEEecCCccchhhhhhcc--CCCCc
Q 024647           33 NHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATK-------LPNIRYELTSPAMSIAELEQNV--AAQST  100 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~-------~~~~~~~~~~~~~~~~d~~~~~--~~~~~  100 (265)
                      .++++||||.=||..+..++...   .+|+++|+++...+.+.+       ...++++++++.   ..+.++-  .+.++
T Consensus        73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~---esLd~l~~~~~~~t  149 (237)
T KOG1663|consen   73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPAL---ESLDELLADGESGT  149 (237)
T ss_pred             CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchh---hhHHHHHhcCCCCc
Confidence            44789999999999999888665   479999999998887654       246888887652   2222221  25679


Q ss_pred             eeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEE
Q 024647          101 VDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus       101 ~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~  135 (265)
                      ||+++..   ||- +....+.++.++|| +||++++
T Consensus       150 fDfaFvD---adK~nY~~y~e~~l~Llr-~GGvi~~  181 (237)
T KOG1663|consen  150 FDFAFVD---ADKDNYSNYYERLLRLLR-VGGVIVV  181 (237)
T ss_pred             eeEEEEc---cchHHHHHHHHHHHhhcc-cccEEEE
Confidence            9999975   333 33478999999999 9999987

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=98.07  E-value=2e-05  Score=63.44  Aligned_cols=102  Identities=18%  Similarity=0.267  Sum_probs=71.8

Q ss_pred             cHHHHHHHHhhCC------CCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhh
Q 024647           20 PEELFKFITSKTT------NHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQ   93 (265)
Q Consensus        20 ~~~l~~~l~~~~~------~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   93 (265)
                      ..-+++||.....      ..-++|||||=+......-...+ +|+.||+++.       .+.|  .+       .|+-+
T Consensus        32 SK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~~f-dvt~IDLns~-------~~~I--~q-------qDFm~   94 (219)
T PF11968_consen   32 SKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSGWF-DVTRIDLNSQ-------HPGI--LQ-------QDFME   94 (219)
T ss_pred             hHHHHHHhhhhccccccccccceEEeecccCCCCcccccCce-eeEEeecCCC-------CCCc--ee-------ecccc
Confidence            5778899887642      12589999996543333322233 4999999873       1222  23       45555


Q ss_pred             ccC---CCCceeEEEeccccccC-Chh---HHHHHHHHHhcCCCcE-----EEEEecC
Q 024647           94 NVA---AQSTVDLVTIAQAMHWF-DLP---QFYNQVKWVLKKPNGV-----IATWCYT  139 (265)
Q Consensus        94 ~~~---~~~~~Dlv~~~~~~~~~-~~~---~~l~~~~~~Lk~pgG~-----l~~~~~~  139 (265)
                      .|+   +.+.||+|.++.++.++ ++.   ..+..+.+.|+ |+|.     |+++.+.
T Consensus        95 rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~-~~g~~~~~~LFlVlP~  151 (219)
T PF11968_consen   95 RPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLK-PPGLSLFPSLFLVLPL  151 (219)
T ss_pred             CCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhC-CCCccCcceEEEEeCc
Confidence            554   46789999999999999 554   58999999999 9999     8777664

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.05  E-value=1.8e-05  Score=68.63  Aligned_cols=111  Identities=12%  Similarity=0.145  Sum_probs=80.8

Q ss_pred             HHHhhCCCCCeEEEEcCCcchhHHHHHhcCCc-EEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEE
Q 024647           26 FITSKTTNHELAWDVGTGSGQAAASLSGIFEN-VIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLV  104 (265)
Q Consensus        26 ~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv  104 (265)
                      ++.....++.+|||.=||-|-++..+++.+.. |+++|++|..++.+++....+-....++...+|........+.+|-|
T Consensus       181 Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrI  260 (341)
T COG2520         181 RVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRI  260 (341)
T ss_pred             HHHhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEE
Confidence            34445567899999999999999999999875 99999999999988762111111111222337777665444789999


Q ss_pred             EeccccccCChhHHHHHHHHHhcCCCcEEEEEecCC
Q 024647          105 TIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTV  140 (265)
Q Consensus       105 ~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~~  140 (265)
                      +.+..-   +...++..+.+.++ +||++-+....+
T Consensus       261 im~~p~---~a~~fl~~A~~~~k-~~g~iHyy~~~~  292 (341)
T COG2520         261 IMGLPK---SAHEFLPLALELLK-DGGIIHYYEFVP  292 (341)
T ss_pred             EeCCCC---cchhhHHHHHHHhh-cCcEEEEEeccc
Confidence            987421   44679999999999 899988766653

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=97.97  E-value=1.1e-05  Score=62.82  Aligned_cols=66  Identities=20%  Similarity=0.335  Sum_probs=45.7

Q ss_pred             eEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhcc--CCCCc-eeEEE
Q 024647           36 LAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNV--AAQST-VDLVT  105 (265)
Q Consensus        36 ~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~--~~~~~-~Dlv~  105 (265)
                      .|+|+.||.|.-+.++++.+.+|++||+++..++.++..       .++.++.       +|+.+..  ..... +|+|+
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~-------gD~~~~~~~~~~~~~~D~vF   74 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFIC-------GDFFELLKRLKSNKIFDVVF   74 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEE-------S-HHHHGGGB------SEEE
T ss_pred             EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEe-------CCHHHHHhhccccccccEEE
Confidence            689999999999999999999999999999999998852       4678887       4444431  12222 79999


Q ss_pred             ecc
Q 024647          106 IAQ  108 (265)
Q Consensus       106 ~~~  108 (265)
                      ++-
T Consensus        75 lSP   77 (163)
T PF09445_consen   75 LSP   77 (163)
T ss_dssp             E--
T ss_pred             ECC
Confidence            865

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.96  E-value=0.00012  Score=59.51  Aligned_cols=115  Identities=24%  Similarity=0.265  Sum_probs=78.4

Q ss_pred             HHHhhhCCCCcHHHHHHH-Hh------hCCC-CCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHc------
Q 024647           10 KQYAETRPNYPEELFKFI-TS------KTTN-HELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATK------   73 (265)
Q Consensus        10 ~~Y~~~rp~y~~~l~~~l-~~------~~~~-~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~------   73 (265)
                      ..|+=..++-+.++...- ..      +... +.+++|||+|.|.-+..++=.++  +|+-+|....-+...+.      
T Consensus        36 ~~~NLt~~~~~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~  115 (215)
T COG0357          36 KAYNLTAIRDPEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELG  115 (215)
T ss_pred             HhcCCCCCCCHHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhC
Confidence            334446666566665442 11      1123 58999999999999998874443  59999999988776654      


Q ss_pred             CCCceEEecCCccchhhhhhccCCCCc-eeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEE
Q 024647           74 LPNIRYELTSPAMSIAELEQNVAAQST-VDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATW  136 (265)
Q Consensus        74 ~~~~~~~~~~~~~~~~d~~~~~~~~~~-~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~  136 (265)
                      ++|+.++.       +.+|+... ... ||+|++...   .+...++.-+...++ +||.++.+
T Consensus       116 L~nv~i~~-------~RaE~~~~-~~~~~D~vtsRAv---a~L~~l~e~~~pllk-~~g~~~~~  167 (215)
T COG0357         116 LENVEIVH-------GRAEEFGQ-EKKQYDVVTSRAV---ASLNVLLELCLPLLK-VGGGFLAY  167 (215)
T ss_pred             CCCeEEeh-------hhHhhccc-ccccCcEEEeehc---cchHHHHHHHHHhcc-cCCcchhh
Confidence            47788888       55666642 223 999999743   145567778888889 88887653

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=97.95  E-value=0.0001  Score=59.11  Aligned_cols=101  Identities=18%  Similarity=0.144  Sum_probs=77.6

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHc-----CCCceEEecCCccchhhhhhccCCCCceeEEE
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATK-----LPNIRYELTSPAMSIAELEQNVAAQSTVDLVT  105 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~-----~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~  105 (265)
                      .++.+||.||-|.|.....+.++-+ +-+.||..|..++..+.     ..||....+.-    .|.-.. ++++.||-|.
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~W----eDvl~~-L~d~~FDGI~  174 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRW----EDVLNT-LPDKHFDGIY  174 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecch----Hhhhcc-ccccCcceeE
Confidence            5778999999999999999988765 57789999999999885     35666666443    232222 5788899999


Q ss_pred             eccc-cccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          106 IAQA-MHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       106 ~~~~-~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      -... -|+-|.-.+.+.+.|+|| |+|++-..+.
T Consensus       175 yDTy~e~yEdl~~~hqh~~rLLk-P~gv~SyfNg  207 (271)
T KOG1709|consen  175 YDTYSELYEDLRHFHQHVVRLLK-PEGVFSYFNG  207 (271)
T ss_pred             eechhhHHHHHHHHHHHHhhhcC-CCceEEEecC
Confidence            7664 344477789999999999 9999876544

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=97.91  E-value=7.3e-05  Score=67.19  Aligned_cols=65  Identities=28%  Similarity=0.374  Sum_probs=52.4

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc------CCCceEEecCCc
Q 024647           21 EELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK------LPNIRYELTSPA   85 (265)
Q Consensus        21 ~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~   85 (265)
                      +.+...+.+..  +.+..++|+-||||.++..+++...+|+||++++..++.|+.      ..|.+|+++.++
T Consensus       369 evLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE  441 (534)
T KOG2187|consen  369 EVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAE  441 (534)
T ss_pred             HHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCccceeeeecchh
Confidence            34444454443  566789999999999999999999999999999999999875      368888886553

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=97.90  E-value=5.9e-05  Score=65.40  Aligned_cols=113  Identities=21%  Similarity=0.277  Sum_probs=70.0

Q ss_pred             cHHHHHHHHhhCC--CCCeEEEEcCCcchhHHHHHhc---------CCcEEEEcCCHHHHHHHHc--------CCCceEE
Q 024647           20 PEELFKFITSKTT--NHELAWDVGTGSGQAAASLSGI---------FENVIGTETSPKQIEFATK--------LPNIRYE   80 (265)
Q Consensus        20 ~~~l~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~---------~~~v~~vD~s~~~~~~a~~--------~~~~~~~   80 (265)
                      |..+.+++.....  ++.+|+|-.||+|.+...+.++         ..+++|+|+++.++..++-        ..+....
T Consensus        31 P~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~  110 (311)
T PF02384_consen   31 PREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINII  110 (311)
T ss_dssp             -HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEE
T ss_pred             HHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccc
Confidence            6666666665543  4467999999999998888763         2469999999999987753        1222344


Q ss_pred             ecCCccchhhhhhccC-CCCceeEEEecccc--c-cCCh-------------------hHHHHHHHHHhcCCCcEEEEEe
Q 024647           81 LTSPAMSIAELEQNVA-AQSTVDLVTIAQAM--H-WFDL-------------------PQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        81 ~~~~~~~~~d~~~~~~-~~~~~Dlv~~~~~~--~-~~~~-------------------~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      ..+.      +..... ....||+|+++-.+  . |.+.                   -.++..+.+.|+ +||.+++..
T Consensus       111 ~~d~------l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk-~~G~~~~Il  183 (311)
T PF02384_consen  111 QGDS------LENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLK-PGGRAAIIL  183 (311)
T ss_dssp             ES-T------TTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred             cccc------ccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcc-cccceeEEe
Confidence            4221      222111 24689999998733  2 2110                   148899999999 999988766


Q ss_pred             cC
Q 024647          138 YT  139 (265)
Q Consensus       138 ~~  139 (265)
                      +.
T Consensus       184 p~  185 (311)
T PF02384_consen  184 PN  185 (311)
T ss_dssp             EH
T ss_pred             cc
Confidence            63

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.89  E-value=0.00012  Score=59.72  Aligned_cols=106  Identities=17%  Similarity=0.168  Sum_probs=72.9

Q ss_pred             HHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHH-HHHcCCCceEE-ecCCccchhhhhhccC
Q 024647           22 ELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIE-FATKLPNIRYE-LTSPAMSIAELEQNVA   96 (265)
Q Consensus        22 ~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~-~a~~~~~~~~~-~~~~~~~~~d~~~~~~   96 (265)
                      +|...+....  .++..+||+|+.||.+|..+.++++ +|+|+|..-.++. ..+..+.+... ..+++....  +++  
T Consensus        66 KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~--~~~--  141 (245)
T COG1189          66 KLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTP--EDF--  141 (245)
T ss_pred             HHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCH--HHc--
Confidence            5666665543  5778999999999999999999987 6999999998776 34443333322 222211111  111  


Q ss_pred             CCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEE
Q 024647           97 AQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus        97 ~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~  135 (265)
                      . +..|++++.-++  +.....+..+..+++ ++|-++.
T Consensus       142 ~-~~~d~~v~DvSF--ISL~~iLp~l~~l~~-~~~~~v~  176 (245)
T COG1189         142 T-EKPDLIVIDVSF--ISLKLILPALLLLLK-DGGDLVL  176 (245)
T ss_pred             c-cCCCeEEEEeeh--hhHHHHHHHHHHhcC-CCceEEE
Confidence            2 267899987552  266789999999999 8988764

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=97.89  E-value=8.1e-05  Score=69.23  Aligned_cols=54  Identities=19%  Similarity=0.175  Sum_probs=40.2

Q ss_pred             cHHHHHHHHhhC----C-----CCCeEEEEcCCcchhHHHHHhcC----------CcEEEEcCCHHHHHHHHc
Q 024647           20 PEELFKFITSKT----T-----NHELAWDVGTGSGQAAASLSGIF----------ENVIGTETSPKQIEFATK   73 (265)
Q Consensus        20 ~~~l~~~l~~~~----~-----~~~~vlDvGcG~G~~~~~l~~~~----------~~v~~vD~s~~~~~~a~~   73 (265)
                      |..+.+.+....    +     ...+|||.|||+|.+...++++.          .+++|+|+++..+..++.
T Consensus         9 P~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~   81 (524)
T TIGR02987         9 PPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKK   81 (524)
T ss_pred             cHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHH
Confidence            455655555432    1     33589999999999999887643          258999999999998864

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=97.89  E-value=0.0001  Score=61.99  Aligned_cols=100  Identities=17%  Similarity=0.202  Sum_probs=70.5

Q ss_pred             CCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc-------C------C----------------CceEE----
Q 024647           34 HELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK-------L------P----------------NIRYE----   80 (265)
Q Consensus        34 ~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-------~------~----------------~~~~~----   80 (265)
                      ..+||-=|||.|.++..++.++..+.|.|.|--|+-..+-       .      |                .+.+-    
T Consensus        57 ~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p  136 (270)
T PF07942_consen   57 KIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDP  136 (270)
T ss_pred             ccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcCc
Confidence            4689999999999999999999999999999999654321       0      0                01111    


Q ss_pred             ------ecCCccchhhhhhccCCC---CceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEE
Q 024647           81 ------LTSPAMSIAELEQNVAAQ---STVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIA  134 (265)
Q Consensus        81 ------~~~~~~~~~d~~~~~~~~---~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~  134 (265)
                            ..+..+..+|+.....++   +++|.|+..+-+--. +.-..++.+.++|| |||..+
T Consensus       137 ~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLk-pgG~WI  199 (270)
T PF07942_consen  137 SSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLK-PGGYWI  199 (270)
T ss_pred             ccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhc-cCCEEE
Confidence                  112333446665554344   689999987654444 45679999999999 999443

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=97.87  E-value=4.8e-05  Score=65.58  Aligned_cols=110  Identities=20%  Similarity=0.215  Sum_probs=75.9

Q ss_pred             cHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhc--CCcEEEEcCCHHHHHHHHcC-------------CCceEEecCC
Q 024647           20 PEELFKFITSKTTNHELAWDVGTGSGQAAASLSGI--FENVIGTETSPKQIEFATKL-------------PNIRYELTSP   84 (265)
Q Consensus        20 ~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-------------~~~~~~~~~~   84 (265)
                      .+.++---.+..+...+||-+|.|.|...+.+.+.  ..+|+-||.+|.|++.++..             +.++...   
T Consensus       276 hEsLV~pals~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~---  352 (508)
T COG4262         276 HESLVYPALSSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVN---  352 (508)
T ss_pred             hheeeecccccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEe---
Confidence            33333323333355578999999999999999875  45899999999999988731             3344444   


Q ss_pred             ccchhhhhhc-cCCCCceeEEEeccccc------cCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647           85 AMSIAELEQN-VAAQSTVDLVTIAQAMH------WFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        85 ~~~~~d~~~~-~~~~~~~Dlv~~~~~~~------~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                          +|+-++ ....+.||.||....=.      -+=...+..-+.+.|+ ++|.+++..
T Consensus       353 ----dDAf~wlr~a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~-e~Gl~VvQa  407 (508)
T COG4262         353 ----DDAFQWLRTAADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLA-ETGLMVVQA  407 (508)
T ss_pred             ----ccHHHHHHhhcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcC-cCceEEEec
Confidence                555444 33456899999864211      1112368888999999 999998843

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=97.87  E-value=9.5e-05  Score=60.00  Aligned_cols=99  Identities=19%  Similarity=0.269  Sum_probs=53.5

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhc--CCcEEEEcCCHHHHHHHHcC---------------CCceEEecCCccchhhhhhc
Q 024647           32 TNHELAWDVGTGSGQAAASLSGI--FENVIGTETSPKQIEFATKL---------------PNIRYELTSPAMSIAELEQN   94 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~---------------~~~~~~~~~~~~~~~d~~~~   94 (265)
                      .+.+..+|||||.|....+.+-.  +.+.+|||+.+...+.|+..               ..+.+..++  +...+....
T Consensus        41 ~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gd--fl~~~~~~~  118 (205)
T PF08123_consen   41 TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGD--FLDPDFVKD  118 (205)
T ss_dssp             -TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS---TTTHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccC--ccccHhHhh
Confidence            46789999999999998877643  34699999999988766531               223334321  122221111


Q ss_pred             cCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEE
Q 024647           95 VAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus        95 ~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~  135 (265)
                      .+  ...|+|+++..+---+....+.+...-|| +|..++.
T Consensus       119 ~~--s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk-~G~~IIs  156 (205)
T PF08123_consen  119 IW--SDADVVFVNNTCFDPDLNLALAELLLELK-PGARIIS  156 (205)
T ss_dssp             HG--HC-SEEEE--TTT-HHHHHHHHHHHTTS--TT-EEEE
T ss_pred             hh--cCCCEEEEeccccCHHHHHHHHHHHhcCC-CCCEEEE
Confidence            11  24799999875321133345677777888 7777654

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.87  E-value=3.5e-05  Score=60.42  Aligned_cols=92  Identities=21%  Similarity=0.161  Sum_probs=70.6

Q ss_pred             CCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC------CCceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647           34 HELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIA  107 (265)
Q Consensus        34 ~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~  107 (265)
                      .+.+.|+|+|+|.++...++...+|++++.+|...+.|.+.      .|++.+.       +|+....+  +..|+|+|-
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~-------gDA~~y~f--e~ADvvicE  103 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVV-------GDARDYDF--ENADVVICE  103 (252)
T ss_pred             hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEe-------cccccccc--cccceeHHH
Confidence            37799999999999999998877899999999999988863      3444444       77777665  468999986


Q ss_pred             ccccc--C-ChhHHHHHHHHHhcCCCcEEEE
Q 024647          108 QAMHW--F-DLPQFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus       108 ~~~~~--~-~~~~~l~~~~~~Lk~pgG~l~~  135 (265)
                      ..=--  . ....+++.+..-|| -+++++=
T Consensus       104 mlDTaLi~E~qVpV~n~vleFLr-~d~tiiP  133 (252)
T COG4076         104 MLDTALIEEKQVPVINAVLEFLR-YDPTIIP  133 (252)
T ss_pred             HhhHHhhcccccHHHHHHHHHhh-cCCcccc
Confidence            52111  1 34578888888999 8988863

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=97.81  E-value=0.00019  Score=64.32  Aligned_cols=106  Identities=16%  Similarity=0.215  Sum_probs=81.5

Q ss_pred             HHHHhhCCCCC-eEEEEcCCcchhHHHHHhcC-CcEEEEcCCHHHHHHHHc-----CCCceEEecCCccchhhhhhccCC
Q 024647           25 KFITSKTTNHE-LAWDVGTGSGQAAASLSGIF-ENVIGTETSPKQIEFATK-----LPNIRYELTSPAMSIAELEQNVAA   97 (265)
Q Consensus        25 ~~l~~~~~~~~-~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~-----~~~~~~~~~~~~~~~~d~~~~~~~   97 (265)
                      ..|..+..+.. +++.+|||.-.++..+.+-+ ..|+.+|+|+..++....     .+...+..       .|+..+.++
T Consensus        39 ~~i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~-------~d~~~l~fe  111 (482)
T KOG2352|consen   39 GSIMKYLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVE-------MDMDQLVFE  111 (482)
T ss_pred             HHHHHhhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEE-------ecchhccCC
Confidence            33444444545 89999999999998888876 479999999999987654     23444555       677888899


Q ss_pred             CCceeEEEeccccccC--Ch---------hHHHHHHHHHhcCCCcEEEEEec
Q 024647           98 QSTVDLVTIAQAMHWF--DL---------PQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        98 ~~~~Dlv~~~~~~~~~--~~---------~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      +++||+|+.-..++.+  |.         ...+.++.|+|+ +||+++....
T Consensus       112 dESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~-~~gk~~svtl  162 (482)
T KOG2352|consen  112 DESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLA-PGGKYISVTL  162 (482)
T ss_pred             CcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhc-cCCEEEEEEe
Confidence            9999999998888765  32         245789999999 9999876555

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=97.80  E-value=0.00029  Score=62.21  Aligned_cols=103  Identities=18%  Similarity=0.315  Sum_probs=70.2

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCCc----EEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhccCCCCce
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFEN----VIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQNVAAQSTV  101 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~~----v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~~~~~~~~  101 (265)
                      .++.+|||+.+++|.=|.++++...+    |+++|+++.-+...+.      ..|+.....+.    ..+.......+.|
T Consensus       155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~----~~~~~~~~~~~~f  230 (355)
T COG0144         155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDA----RRLAELLPGGEKF  230 (355)
T ss_pred             CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccc----ccccccccccCcC
Confidence            46789999999999999999987654    6999999998887654      13444444222    1111121222359


Q ss_pred             eEEEecc------ccc------cC-C----------hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          102 DLVTIAQ------AMH------WF-D----------LPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       102 Dlv~~~~------~~~------~~-~----------~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      |.|++.-      +++      |- .          ...++..+.++|| |||.|+..+..
T Consensus       231 D~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk-~GG~LVYSTCS  290 (355)
T COG0144         231 DRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLK-PGGVLVYSTCS  290 (355)
T ss_pred             cEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEccC
Confidence            9999743      221      21 1          1258889999999 99999987775

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=97.79  E-value=9.7e-05  Score=57.95  Aligned_cols=113  Identities=15%  Similarity=0.078  Sum_probs=69.6

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcC-C--cEEEEcCCHHHHHHHHcCCCceEEec-CCcc---chhhhhhccCCCCceeEE
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIF-E--NVIGTETSPKQIEFATKLPNIRYELT-SPAM---SIAELEQNVAAQSTVDLV  104 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~-~--~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~---~~~d~~~~~~~~~~~Dlv  104 (265)
                      .++++|||+||-+|..++-..++. +  .|.|||+-+-     ....++.++++ +++.   ...-.+.  +++..+|+|
T Consensus        68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----~p~~Ga~~i~~~dvtdp~~~~ki~e~--lp~r~VdvV  140 (232)
T KOG4589|consen   68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----EPPEGATIIQGNDVTDPETYRKIFEA--LPNRPVDVV  140 (232)
T ss_pred             CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----cCCCCcccccccccCCHHHHHHHHHh--CCCCcccEE
Confidence            678999999999999999988876 3  4999997443     22245555554 1210   0011222  477899999


Q ss_pred             Eeccc-----cccCChhHHHHHH-------HHHhcCCCcEEEEEecCCCCCChHHHHhhcc
Q 024647          105 TIAQA-----MHWFDLPQFYNQV-------KWVLKKPNGVIATWCYTVPEVNVSVDAVFQP  153 (265)
Q Consensus       105 ~~~~~-----~~~~~~~~~l~~~-------~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~~~  153 (265)
                      ++..+     +...|....++-|       ...++ |+|.+++-.+.... .+.+.+.+..
T Consensus       141 lSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~-p~g~fvcK~w~g~e-~~~l~r~l~~  199 (232)
T KOG4589|consen  141 LSDMAPNATGVRIRDHYRSIELCDSALLFALTLLI-PNGSFVCKLWDGSE-EALLQRRLQA  199 (232)
T ss_pred             EeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcC-CCcEEEEEEecCCc-hHHHHHHHHH
Confidence            99753     2223444444444       55678 99999985554333 3444443333

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.73  E-value=5.5e-05  Score=63.24  Aligned_cols=105  Identities=17%  Similarity=0.143  Sum_probs=63.2

Q ss_pred             CCCeEEEEcCCcchhHHHH-HhcCCcEEEEcCCHHHHHHHHc--CCCceE-----------EecCC--------------
Q 024647           33 NHELAWDVGTGSGQAAASL-SGIFENVIGTETSPKQIEFATK--LPNIRY-----------ELTSP--------------   84 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l-~~~~~~v~~vD~s~~~~~~a~~--~~~~~~-----------~~~~~--------------   84 (265)
                      ++.++||||||+-.....- .+.+.+|+..|.++..++..++  ...-.+           ..+..              
T Consensus        56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~V  135 (256)
T PF01234_consen   56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAV  135 (256)
T ss_dssp             -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHE
T ss_pred             CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhh
Confidence            4568999999996554332 3566789999999999987654  000000           00000              


Q ss_pred             -ccchhhhhhcc-CCC-----CceeEEEeccccccC--Chh---HHHHHHHHHhcCCCcEEEEEec
Q 024647           85 -AMSIAELEQNV-AAQ-----STVDLVTIAQAMHWF--DLP---QFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        85 -~~~~~d~~~~~-~~~-----~~~Dlv~~~~~~~~~--~~~---~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                       .++..|+.+.+ +..     .++|+|++.+++...  |.+   .+++++.++|| |||.|++...
T Consensus       136 k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLk-pGG~Lil~~~  200 (256)
T PF01234_consen  136 KQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLK-PGGHLILAGV  200 (256)
T ss_dssp             EEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEE-EEEEEEEEEE
T ss_pred             ceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcC-CCcEEEEEEE
Confidence             00112332221 111     249999999988765  443   68999999999 9999998554

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=97.72  E-value=0.00021  Score=63.37  Aligned_cols=92  Identities=14%  Similarity=0.100  Sum_probs=69.5

Q ss_pred             CeEEEEcCCcchhHHHHHhc--C-CcEEEEcCCHHHHHHHHcC------CCceEEecCCccchhhhhhcc-CCCCceeEE
Q 024647           35 ELAWDVGTGSGQAAASLSGI--F-ENVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAELEQNV-AAQSTVDLV  104 (265)
Q Consensus        35 ~~vlDvGcG~G~~~~~l~~~--~-~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d~~~~~-~~~~~~Dlv  104 (265)
                      .+|||+.||+|..+..++.+  + .+|+++|+++..++.+++.      .++.+..       +|+..+. .....||+|
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~-------~Da~~~l~~~~~~fDvI  118 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPN-------EDAANVLRYRNRKFHVI  118 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEc-------hhHHHHHHHhCCCCCEE
Confidence            58999999999999999987  3 4799999999999988752      2334444       5555442 123579999


Q ss_pred             EeccccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647          105 TIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       105 ~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      ...- +  -.+..+++.+.+.++ +||.|.+..
T Consensus       119 dlDP-f--Gs~~~fld~al~~~~-~~glL~vTa  147 (374)
T TIGR00308       119 DIDP-F--GTPAPFVDSAIQASA-ERGLLLVTA  147 (374)
T ss_pred             EeCC-C--CCcHHHHHHHHHhcc-cCCEEEEEe
Confidence            9864 2  144689999999999 899998853

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.66  E-value=0.00027  Score=55.93  Aligned_cols=114  Identities=16%  Similarity=0.110  Sum_probs=71.9

Q ss_pred             HHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCC
Q 024647           23 LFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQS   99 (265)
Q Consensus        23 l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   99 (265)
                      +.+++..+.  -.+++|||+|+|+|..+...++.++ .|++.|+.|-..+..+-..+.+.  .++.++..|.  +. .+.
T Consensus        67 lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~ang--v~i~~~~~d~--~g-~~~  141 (218)
T COG3897          67 LARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANG--VSILFTHADL--IG-SPP  141 (218)
T ss_pred             HHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhcc--ceeEEeeccc--cC-CCc
Confidence            344444432  2568899999999999999999987 59999999776665543211111  1111111222  33 667


Q ss_pred             ceeEEEeccccccC-ChhHHHHHHHHHhcCCCcE-EEEEecCCCCC
Q 024647          100 TVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGV-IATWCYTVPEV  143 (265)
Q Consensus       100 ~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~-l~~~~~~~~~~  143 (265)
                      .+|+++++..+.-- ...++++ +.+.|+ ..|. +++.+++.+.+
T Consensus       142 ~~Dl~LagDlfy~~~~a~~l~~-~~~~l~-~~g~~vlvgdp~R~~l  185 (218)
T COG3897         142 AFDLLLAGDLFYNHTEADRLIP-WKDRLA-EAGAAVLVGDPGRAYL  185 (218)
T ss_pred             ceeEEEeeceecCchHHHHHHH-HHHHHH-hCCCEEEEeCCCCCCC
Confidence            89999998866544 3345666 777777 5665 44556665544

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.49  E-value=0.00022  Score=54.46  Aligned_cols=42  Identities=24%  Similarity=0.306  Sum_probs=36.0

Q ss_pred             CCCCeEEEEcCCcchhHHHHHh-----c-CCcEEEEcCCHHHHHHHHc
Q 024647           32 TNHELAWDVGTGSGQAAASLSG-----I-FENVIGTETSPKQIEFATK   73 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~-----~-~~~v~~vD~s~~~~~~a~~   73 (265)
                      .+..+|+|+|||.|.+++.|+.     . ..+|++||.++..++.+.+
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~   71 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQK   71 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHH
Confidence            4567899999999999999998     3 3479999999999988765

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.47  E-value=0.00075  Score=57.05  Aligned_cols=95  Identities=14%  Similarity=0.131  Sum_probs=58.0

Q ss_pred             CCeEEEEcCCcc-hhHHHHHhc-C--CcEEEEcCCHHHHHHHHcC--------CCceEEecCCccchhhhhhccCCCCce
Q 024647           34 HELAWDVGTGSG-QAAASLSGI-F--ENVIGTETSPKQIEFATKL--------PNIRYELTSPAMSIAELEQNVAAQSTV  101 (265)
Q Consensus        34 ~~~vlDvGcG~G-~~~~~l~~~-~--~~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~d~~~~~~~~~~~  101 (265)
                      +.+|+=||||+= ..+..+++. +  ..|+++|+++..++.+++.        .++.|..       +|.......-..|
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~-------~d~~~~~~dl~~~  193 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFIT-------ADVLDVTYDLKEY  193 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEE-------S-GGGG-GG----
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEe-------cchhccccccccC
Confidence            469999999984 455555554 3  4689999999999988752        4567777       4444443334579


Q ss_pred             eEEEeccccccC--ChhHHHHHHHHHhcCCCcEEEEE
Q 024647          102 DLVTIAQAMHWF--DLPQFYNQVKWVLKKPNGVIATW  136 (265)
Q Consensus       102 Dlv~~~~~~~~~--~~~~~l~~~~~~Lk~pgG~l~~~  136 (265)
                      |+|+.+...-.-  +..+++..+.+.++ ||..+++-
T Consensus       194 DvV~lAalVg~~~e~K~~Il~~l~~~m~-~ga~l~~R  229 (276)
T PF03059_consen  194 DVVFLAALVGMDAEPKEEILEHLAKHMA-PGARLVVR  229 (276)
T ss_dssp             SEEEE-TT-S----SHHHHHHHHHHHS--TTSEEEEE
T ss_pred             CEEEEhhhcccccchHHHHHHHHHhhCC-CCcEEEEe
Confidence            999977654433  66789999999999 99988874

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=97.45  E-value=0.00034  Score=55.67  Aligned_cols=53  Identities=17%  Similarity=0.275  Sum_probs=39.4

Q ss_pred             cHHHHHHHHhhC------CCCCeEEEEcCCcchhHHHHHhcCCc--EEEEcCCHHHHHHHH
Q 024647           20 PEELFKFITSKT------TNHELAWDVGTGSGQAAASLSGIFEN--VIGTETSPKQIEFAT   72 (265)
Q Consensus        20 ~~~l~~~l~~~~------~~~~~vlDvGcG~G~~~~~l~~~~~~--v~~vD~s~~~~~~a~   72 (265)
                      .++.++|-.-+.      .+.--..|||||-|.+...|+..+++  ++|.||-....++.+
T Consensus        41 sP~~mDWS~~yp~f~~~~~~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk  101 (249)
T KOG3115|consen   41 SPQEMDWSKYYPDFRRALNKKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVK  101 (249)
T ss_pred             ChHhCcHHHhhhhhhhhccccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHH
Confidence            355666654331      12234799999999999999999986  899999888777655

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.45  E-value=0.00019  Score=54.68  Aligned_cols=38  Identities=24%  Similarity=0.307  Sum_probs=34.2

Q ss_pred             eEEEEcCCcchhHHHHHhcCCc--EEEEcCCHHHHHHHHc
Q 024647           36 LAWDVGTGSGQAAASLSGIFEN--VIGTETSPKQIEFATK   73 (265)
Q Consensus        36 ~vlDvGcG~G~~~~~l~~~~~~--v~~vD~s~~~~~~a~~   73 (265)
                      ++||+|||.|..+..+++.+++  ++++|+++.+.+.+++
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~   40 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEE   40 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHH
Confidence            4899999999999999988764  9999999999998774

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=97.43  E-value=0.0025  Score=56.29  Aligned_cols=101  Identities=22%  Similarity=0.231  Sum_probs=70.6

Q ss_pred             CCCeEEEEcCCc-chhHHHHHhcC--CcEEEEcCCHHHHHHHHcCCCceEEecCCc-cchhhhhhccCCCCceeEEEecc
Q 024647           33 NHELAWDVGTGS-GQAAASLSGIF--ENVIGTETSPKQIEFATKLPNIRYELTSPA-MSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      ++.+|+-+|||+ |.++..+++..  .+|+++|+++.-++.|++.........+.+ ......... .....+|+++-..
T Consensus       168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~-t~g~g~D~vie~~  246 (350)
T COG1063         168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILEL-TGGRGADVVIEAV  246 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHH-hCCCCCCEEEECC
Confidence            344899999998 99988888765  479999999999999987433343333221 000111112 1223699999765


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEecCC
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCYTV  140 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~~  140 (265)
                      .     ...++..+.++++ |||++++.....
T Consensus       247 G-----~~~~~~~ai~~~r-~gG~v~~vGv~~  272 (350)
T COG1063         247 G-----SPPALDQALEALR-PGGTVVVVGVYG  272 (350)
T ss_pred             C-----CHHHHHHHHHHhc-CCCEEEEEeccC
Confidence            4     4568999999999 999999866653

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=97.40  E-value=0.00079  Score=64.79  Aligned_cols=113  Identities=18%  Similarity=0.165  Sum_probs=72.0

Q ss_pred             CcHHHHHHHHhhC---CCCCeEEEEcCCcchhHHHHHhc-----------------------------------------
Q 024647           19 YPEELFKFITSKT---TNHELAWDVGTGSGQAAASLSGI-----------------------------------------   54 (265)
Q Consensus        19 y~~~l~~~l~~~~---~~~~~vlDvGcG~G~~~~~l~~~-----------------------------------------   54 (265)
                      ..+.+...+....   .++..++|-+||+|++....+..                                         
T Consensus       173 l~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~  252 (702)
T PRK11783        173 LKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGL  252 (702)
T ss_pred             CcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcc
Confidence            4455555554432   34678999999999999876531                                         


Q ss_pred             ---CCcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCC--CCceeEEEeccccc-cC-C---hhH
Q 024647           55 ---FENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAA--QSTVDLVTIAQAMH-WF-D---LPQ  117 (265)
Q Consensus        55 ---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~--~~~~Dlv~~~~~~~-~~-~---~~~  117 (265)
                         ..+++|+|+++.+++.|+..       ..+.+.+       +|+.+++.+  .+++|+|+++-..- -+ +   ...
T Consensus       253 ~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~-------~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~  325 (702)
T PRK11783        253 AELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEV-------KDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIA  325 (702)
T ss_pred             cccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEe-------CChhhcccccccCCCCEEEECCCCcCccCchHHHHH
Confidence               02589999999999999852       1245555       666666433  35799999997432 12 2   223


Q ss_pred             HHHHH---HHHhcCCCcEEEEEecC
Q 024647          118 FYNQV---KWVLKKPNGVIATWCYT  139 (265)
Q Consensus       118 ~l~~~---~~~Lk~pgG~l~~~~~~  139 (265)
                      ++.++   .+... +|+.+++.+..
T Consensus       326 lY~~lg~~lk~~~-~g~~~~llt~~  349 (702)
T PRK11783        326 LYSQLGRRLKQQF-GGWNAALFSSS  349 (702)
T ss_pred             HHHHHHHHHHHhC-CCCeEEEEeCC
Confidence            43333   34445 68888776553

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=97.39  E-value=0.0001  Score=53.21  Aligned_cols=92  Identities=20%  Similarity=0.217  Sum_probs=39.0

Q ss_pred             EEEcCCcchhHHHHHhcC-----CcEEEEcCCHH---HHHHHHc---CCCceEEecCCccchhhhhhccCCCCceeEEEe
Q 024647           38 WDVGTGSGQAAASLSGIF-----ENVIGTETSPK---QIEFATK---LPNIRYELTSPAMSIAELEQNVAAQSTVDLVTI  106 (265)
Q Consensus        38 lDvGcG~G~~~~~l~~~~-----~~v~~vD~s~~---~~~~a~~---~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~  106 (265)
                      ||+|+..|..+..+++..     .+++++|+.+.   ..+..++   ..++.+..++..   ..+..++  .+++|+++.
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~---~~l~~~~--~~~~dli~i   75 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSP---DFLPSLP--DGPIDLIFI   75 (106)
T ss_dssp             --------------------------EEEESS------------GGG-BTEEEEES-TH---HHHHHHH--H--EEEEEE
T ss_pred             CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcH---HHHHHcC--CCCEEEEEE
Confidence            689999999999988643     26999999993   3333332   256888886542   1122332  578999998


Q ss_pred             ccccccC-ChhHHHHHHHHHhcCCCcEEEEE
Q 024647          107 AQAMHWF-DLPQFYNQVKWVLKKPNGVIATW  136 (265)
Q Consensus       107 ~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~  136 (265)
                      .. -|.. .....+..+...|+ |||++++=
T Consensus        76 Dg-~H~~~~~~~dl~~~~~~l~-~ggviv~d  104 (106)
T PF13578_consen   76 DG-DHSYEAVLRDLENALPRLA-PGGVIVFD  104 (106)
T ss_dssp             ES----HHHHHHHHHHHGGGEE-EEEEEEEE
T ss_pred             CC-CCCHHHHHHHHHHHHHHcC-CCeEEEEe
Confidence            64 2322 34467888899999 99998863

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.29  E-value=0.00069  Score=58.28  Aligned_cols=105  Identities=17%  Similarity=0.191  Sum_probs=63.9

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcCC---cEEEEcCCHHHHHHHHcC-CC-----ceEEecCCccchhhhhhccCCCCceeE
Q 024647           33 NHELAWDVGTGSGQAAASLSGIFE---NVIGTETSPKQIEFATKL-PN-----IRYELTSPAMSIAELEQNVAAQSTVDL  103 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~-~~-----~~~~~~~~~~~~~d~~~~~~~~~~~Dl  103 (265)
                      .++++||+|.|+|....++-.-++   .++.++.|+..-+..... .|     ..+...++   ..|-..++ ....|++
T Consensus       113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~v---t~dRl~lp-~ad~ytl  188 (484)
T COG5459         113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDV---TEDRLSLP-AADLYTL  188 (484)
T ss_pred             CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCcc---chhccCCC-ccceeeh
Confidence            356799999999998888777665   478888888876654321 11     11111111   12222232 2345666


Q ss_pred             EEecc-ccccCC---hhHHHHHHHHHhcCCCcEEEEEecCCCC
Q 024647          104 VTIAQ-AMHWFD---LPQFYNQVKWVLKKPNGVIATWCYTVPE  142 (265)
Q Consensus       104 v~~~~-~~~~~~---~~~~l~~~~~~Lk~pgG~l~~~~~~~~~  142 (265)
                      +++.. .+|--.   ....+..+..++. |||.|++...+.+.
T Consensus       189 ~i~~~eLl~d~~ek~i~~~ie~lw~l~~-~gg~lVivErGtp~  230 (484)
T COG5459         189 AIVLDELLPDGNEKPIQVNIERLWNLLA-PGGHLVIVERGTPA  230 (484)
T ss_pred             hhhhhhhccccCcchHHHHHHHHHHhcc-CCCeEEEEeCCCch
Confidence            66544 223221   2247888899999 99999998877554

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.22  E-value=0.00043  Score=53.08  Aligned_cols=107  Identities=19%  Similarity=0.205  Sum_probs=70.7

Q ss_pred             CCeEEEEcCCc-chhHHHHHhcCC--cEEEEcCCHHHHHHHHcCCCce--EEecC---CccchhhhhhccCCCCceeEEE
Q 024647           34 HELAWDVGTGS-GQAAASLSGIFE--NVIGTETSPKQIEFATKLPNIR--YELTS---PAMSIAELEQNVAAQSTVDLVT  105 (265)
Q Consensus        34 ~~~vlDvGcG~-G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~--~~~~~---~~~~~~d~~~~~~~~~~~Dlv~  105 (265)
                      +..|||+|.|- |..+..++...+  .|..+|=++..++..++.-+.+  .-...   .++..-..+.. ....+||.|+
T Consensus        30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq-~eq~tFDiIl  108 (201)
T KOG3201|consen   30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQ-QEQHTFDIIL  108 (201)
T ss_pred             HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHH-HhhCcccEEE
Confidence            46799999994 666666665543  5999999999888776521111  11111   11111111111 2556899999


Q ss_pred             eccccccC-ChhHHHHHHHHHhcCCCcEEEEEecCCCC
Q 024647          106 IAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTVPE  142 (265)
Q Consensus       106 ~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~  142 (265)
                      ++.++-.- -...+.+.+.+.|+ |.|.-++..++...
T Consensus       109 aADClFfdE~h~sLvdtIk~lL~-p~g~Al~fsPRRg~  145 (201)
T KOG3201|consen  109 AADCLFFDEHHESLVDTIKSLLR-PSGRALLFSPRRGQ  145 (201)
T ss_pred             eccchhHHHHHHHHHHHHHHHhC-cccceeEecCcccc
Confidence            99988755 45678899999999 99997777776543

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.21  E-value=0.0048  Score=49.28  Aligned_cols=118  Identities=22%  Similarity=0.260  Sum_probs=79.9

Q ss_pred             HHhhhCCCCcHHHHHHHHhhC-----CCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHH----HHHcCCCceE
Q 024647           11 QYAETRPNYPEELFKFITSKT-----TNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIE----FATKLPNIRY   79 (265)
Q Consensus        11 ~Y~~~rp~y~~~l~~~l~~~~-----~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~----~a~~~~~~~~   79 (265)
                      .|..+.|. -.++...+...+     .++.+||=+|+.+|+...++++-..  .+.|||.|+.+..    .+++++|+-=
T Consensus        50 eYR~Wnp~-RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~P  128 (231)
T COG1889          50 EYREWNPR-RSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIP  128 (231)
T ss_pred             ceeeeCcc-hhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCcee
Confidence            46677774 677877777654     4778999999999999999998764  5999999998765    4556677655


Q ss_pred             EecCCccchhhhhhccCCCCceeEEEeccccccCCh-hHHHHHHHHHhcCCCcEEEEE
Q 024647           80 ELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDL-PQFYNQVKWVLKKPNGVIATW  136 (265)
Q Consensus        80 ~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~-~~~l~~~~~~Lk~pgG~l~~~  136 (265)
                      +..+++    --+....--+.+|+|+..-+  --+. .-+..++..-|+ +||.+++.
T Consensus       129 IL~DA~----~P~~Y~~~Ve~VDviy~DVA--Qp~Qa~I~~~Na~~FLk-~~G~~~i~  179 (231)
T COG1889         129 ILEDAR----KPEKYRHLVEKVDVIYQDVA--QPNQAEILADNAEFFLK-KGGYVVIA  179 (231)
T ss_pred             eecccC----CcHHhhhhcccccEEEEecC--CchHHHHHHHHHHHhcc-cCCeEEEE
Confidence            553321    11112122346899987522  0122 236778889999 89966553

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=97.17  E-value=0.0021  Score=54.95  Aligned_cols=112  Identities=14%  Similarity=0.192  Sum_probs=75.5

Q ss_pred             cHHHHHHHHhh---CCCCCeEEEEcCCcchhHHHHHhcCC---cEEEEcCCHHHHHHHHc------CCCceEEecCCccc
Q 024647           20 PEELFKFITSK---TTNHELAWDVGTGSGQAAASLSGIFE---NVIGTETSPKQIEFATK------LPNIRYELTSPAMS   87 (265)
Q Consensus        20 ~~~l~~~l~~~---~~~~~~vlDvGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~   87 (265)
                      .++....+...   ..++..|||+.+++|.=|..+++...   .|++.|+++.-+...+.      ..++....      
T Consensus        69 vQd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~------  142 (283)
T PF01189_consen   69 VQDESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVIN------  142 (283)
T ss_dssp             EHHHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEE------
T ss_pred             ecccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEe------
Confidence            44444444333   24667899999999999999998754   69999999999887754      24555554      


Q ss_pred             hhhhhhc--cCCCCceeEEEecccc----ccC-C------------------hhHHHHHHHHHh----cCCCcEEEEEec
Q 024647           88 IAELEQN--VAAQSTVDLVTIAQAM----HWF-D------------------LPQFYNQVKWVL----KKPNGVIATWCY  138 (265)
Q Consensus        88 ~~d~~~~--~~~~~~~Dlv~~~~~~----~~~-~------------------~~~~l~~~~~~L----k~pgG~l~~~~~  138 (265)
                       .|....  ......||.|++.-..    .+- +                  ..+.++.+.+.+    | |||+++..+.
T Consensus       143 -~D~~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k-~gG~lvYsTC  220 (283)
T PF01189_consen  143 -ADARKLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFK-PGGRLVYSTC  220 (283)
T ss_dssp             -SHHHHHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBE-EEEEEEEEES
T ss_pred             -eccccccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhccccc-CCCeEEEEec
Confidence             343333  1233469999974311    111 1                  125788999999    9 9999998776


Q ss_pred             C
Q 024647          139 T  139 (265)
Q Consensus       139 ~  139 (265)
                      .
T Consensus       221 S  221 (283)
T PF01189_consen  221 S  221 (283)
T ss_dssp             H
T ss_pred             c
Confidence            4

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=97.16  E-value=0.0024  Score=54.81  Aligned_cols=90  Identities=13%  Similarity=0.187  Sum_probs=64.0

Q ss_pred             hCCCCcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC-----CCceEEecCCccc
Q 024647           15 TRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL-----PNIRYELTSPAMS   87 (265)
Q Consensus        15 ~rp~y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~   87 (265)
                      +.|...+++++.|.  ..+++.++|.-||.|.-+..+++..  .+|+|+|.++.+++.+++.     .++.++..+.   
T Consensus         4 H~pVll~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF---   78 (305)
T TIGR00006         4 HQSVLLDEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNF---   78 (305)
T ss_pred             CcchhHHHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCH---
Confidence            45666666666663  2456789999999999999999875  5799999999999998752     2566666544   


Q ss_pred             hhhhhhc-c-CCCCceeEEEecccc
Q 024647           88 IAELEQN-V-AAQSTVDLVTIAQAM  110 (265)
Q Consensus        88 ~~d~~~~-~-~~~~~~Dlv~~~~~~  110 (265)
                       .++... . ....++|.|+....+
T Consensus        79 -~~l~~~l~~~~~~~vDgIl~DLGv  102 (305)
T TIGR00006        79 -ANFFEHLDELLVTKIDGILVDLGV  102 (305)
T ss_pred             -HHHHHHHHhcCCCcccEEEEeccC
Confidence             222221 1 133579999988743

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.14  E-value=0.0035  Score=54.46  Aligned_cols=96  Identities=20%  Similarity=0.182  Sum_probs=70.6

Q ss_pred             CCCCCeEEEEcCC-cchhHHHHHh-cCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           31 TTNHELAWDVGTG-SGQAAASLSG-IFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        31 ~~~~~~vlDvGcG-~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      .++++.|+-+|+| .|..+.++++ .+++|+++|.|++-++.|+++....++...-.   ..++...   +.+|+|+.. 
T Consensus       164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~---~~~~~~~---~~~d~ii~t-  236 (339)
T COG1064         164 VKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDS---DALEAVK---EIADAIIDT-  236 (339)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCc---hhhHHhH---hhCcEEEEC-
Confidence            4577889988888 3567777777 67899999999999999998755555553210   2223222   239999975 


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                          .. ...+....+.|+ +||++++....
T Consensus       237 ----v~-~~~~~~~l~~l~-~~G~~v~vG~~  261 (339)
T COG1064         237 ----VG-PATLEPSLKALR-RGGTLVLVGLP  261 (339)
T ss_pred             ----CC-hhhHHHHHHHHh-cCCEEEEECCC
Confidence                34 678999999999 99999987664

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=97.11  E-value=0.0015  Score=54.39  Aligned_cols=109  Identities=15%  Similarity=0.194  Sum_probs=73.1

Q ss_pred             CCcHHHHHHHHhh-CCCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHc-------CCCceEEecCCcc
Q 024647           18 NYPEELFKFITSK-TTNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATK-------LPNIRYELTSPAM   86 (265)
Q Consensus        18 ~y~~~l~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~-------~~~~~~~~~~~~~   86 (265)
                      .|++++.-.+... ..++.+|+|-|.|+|.++.++++..   .++.-.|......+.|.+       -.|+.+...+   
T Consensus        89 ~Yt~Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrD---  165 (314)
T KOG2915|consen   89 LYTPDIAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRD---  165 (314)
T ss_pred             EecccHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEee---
Confidence            4555554333222 3688999999999999999999876   479999998887777764       1566666533   


Q ss_pred             chhhhhhcc--CCCCceeEEEeccccccCChhHHHHHHHHHhcCCCc-EEEEEec
Q 024647           87 SIAELEQNV--AAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNG-VIATWCY  138 (265)
Q Consensus        87 ~~~d~~~~~--~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG-~l~~~~~  138 (265)
                          +....  ..+..+|.|+....-.|    .++..++.+|| .+| +|+.+.+
T Consensus       166 ----Vc~~GF~~ks~~aDaVFLDlPaPw----~AiPha~~~lk-~~g~r~csFSP  211 (314)
T KOG2915|consen  166 ----VCGSGFLIKSLKADAVFLDLPAPW----EAIPHAAKILK-DEGGRLCSFSP  211 (314)
T ss_pred             ----cccCCccccccccceEEEcCCChh----hhhhhhHHHhh-hcCceEEeccH
Confidence                33322  23568999998755444    45556666888 555 5555444

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.08  E-value=0.0066  Score=51.95  Aligned_cols=104  Identities=14%  Similarity=0.141  Sum_probs=70.9

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhcC--CcEEEEcCCHHHHHHHHcCCCceEEecCCccchhh----hhhccCCCCceeEE
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGIF--ENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAE----LEQNVAAQSTVDLV  104 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d----~~~~~~~~~~~Dlv  104 (265)
                      +.+.+||-+|+|+ |..+...++.+  .+|+.+|+++..++.|+++.--.+.+........+    ++.. .....+|..
T Consensus       168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~-~g~~~~d~~  246 (354)
T KOG0024|consen  168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKA-LGKKQPDVT  246 (354)
T ss_pred             ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhh-ccccCCCeE
Confidence            5678999999998 99998888875  37999999999999999853222222211100111    1222 233448888


Q ss_pred             EeccccccCChhHHHHHHHHHhcCCCcEEEEEecCCCC
Q 024647          105 TIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTVPE  142 (265)
Q Consensus       105 ~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~  142 (265)
                      +....     .+..++.+...++ +||++++..+..+.
T Consensus       247 ~dCsG-----~~~~~~aai~a~r-~gGt~vlvg~g~~~  278 (354)
T KOG0024|consen  247 FDCSG-----AEVTIRAAIKATR-SGGTVVLVGMGAEE  278 (354)
T ss_pred             EEccC-----chHHHHHHHHHhc-cCCEEEEeccCCCc
Confidence            86543     3467888899999 89998887776443

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=97.07  E-value=0.0038  Score=52.34  Aligned_cols=104  Identities=17%  Similarity=0.162  Sum_probs=60.0

Q ss_pred             CeEEEEcCCc--chhHHHHHhc---CCcEEEEcCCHHHHHHHHcC----CC--ceEEecCCccchhhhh-----hccCCC
Q 024647           35 ELAWDVGTGS--GQAAASLSGI---FENVIGTETSPKQIEFATKL----PN--IRYELTSPAMSIAELE-----QNVAAQ   98 (265)
Q Consensus        35 ~~vlDvGcG~--G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~----~~--~~~~~~~~~~~~~d~~-----~~~~~~   98 (265)
                      .-.||||||-  -..+-.+++.   -++|+-||.+|..+++++.+    ++  ..+++.+.+--..=+.     .+ +.-
T Consensus        70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~-lD~  148 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGL-LDF  148 (267)
T ss_dssp             -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC---T
T ss_pred             ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhc-CCC
Confidence            4589999993  2334445543   35799999999999988752    45  6778855422111111     11 111


Q ss_pred             CceeEEEeccccccC-C---hhHHHHHHHHHhcCCCcEEEEEecCC
Q 024647           99 STVDLVTIAQAMHWF-D---LPQFYNQVKWVLKKPNGVIATWCYTV  140 (265)
Q Consensus        99 ~~~Dlv~~~~~~~~~-~---~~~~l~~~~~~Lk~pgG~l~~~~~~~  140 (265)
                      ...=.++....+||+ |   +..++..+...|. ||+.|++.....
T Consensus       149 ~rPVavll~~vLh~v~D~~dp~~iv~~l~d~la-pGS~L~ish~t~  193 (267)
T PF04672_consen  149 DRPVAVLLVAVLHFVPDDDDPAGIVARLRDALA-PGSYLAISHATD  193 (267)
T ss_dssp             TS--EEEECT-GGGS-CGCTHHHHHHHHHCCS--TT-EEEEEEEB-
T ss_pred             CCCeeeeeeeeeccCCCccCHHHHHHHHHHhCC-CCceEEEEecCC
Confidence            233355666788998 4   5579999999999 999999977764

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>KOG2730 consensus Methylase [General function prediction only]

Probab=97.07  E-value=0.001  Score=53.64  Aligned_cols=63  Identities=22%  Similarity=0.265  Sum_probs=49.4

Q ss_pred             cHHHHHHHHhhC---CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC-------CCceEEec
Q 024647           20 PEELFKFITSKT---TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL-------PNIRYELT   82 (265)
Q Consensus        20 ~~~l~~~l~~~~---~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~   82 (265)
                      |+.....+....   -....|+|.-||-|.-+...+.+++.|++||++|.-++-|+..       ..+.|+++
T Consensus        78 pe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~G  150 (263)
T KOG2730|consen   78 PEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICG  150 (263)
T ss_pred             cHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEec
Confidence            556666665443   2456799999999999999999999999999999999999863       34566663

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=97.02  E-value=0.0081  Score=52.86  Aligned_cols=109  Identities=18%  Similarity=0.103  Sum_probs=71.0

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCC-----------------------------------------c
Q 024647           21 EELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFE-----------------------------------------N   57 (265)
Q Consensus        21 ~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~-----------------------------------------~   57 (265)
                      +-+...|....  .++..++|-=||+|++....+-...                                         .
T Consensus       177 etLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~  256 (381)
T COG0116         177 ETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPI  256 (381)
T ss_pred             HHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccce
Confidence            44444444332  3446799999999999998765442                                         2


Q ss_pred             EEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCCCCceeEEEecccccc-C-Ch---h----HHHHH
Q 024647           58 VIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHW-F-DL---P----QFYNQ  121 (265)
Q Consensus        58 v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~-~-~~---~----~~l~~  121 (265)
                      ++|+|+++.+++.|+..       ..+.|.+       +|+..+..+-+.+|+|+|+-..-. + +.   .    .+.+.
T Consensus       257 ~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~-------~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~  329 (381)
T COG0116         257 IYGSDIDPRHIEGAKANARAAGVGDLIEFKQ-------ADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRT  329 (381)
T ss_pred             EEEecCCHHHHHHHHHHHHhcCCCceEEEEE-------cchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHH
Confidence            77999999999999852       3467777       666777544378999999873321 2 22   1    34445


Q ss_pred             HHHHhcCCCcEEEEEe
Q 024647          122 VKWVLKKPNGVIATWC  137 (265)
Q Consensus       122 ~~~~Lk~pgG~l~~~~  137 (265)
                      +.+.++ .-+..++.+
T Consensus       330 lk~~~~-~ws~~v~tt  344 (381)
T COG0116         330 LKRLLA-GWSRYVFTT  344 (381)
T ss_pred             HHHHhc-CCceEEEEc
Confidence            556666 455555544

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=96.99  E-value=0.0011  Score=59.98  Aligned_cols=128  Identities=16%  Similarity=0.248  Sum_probs=90.0

Q ss_pred             hHHHHHHHHHhhhCCCCcHHHHHHHHhhCC-----CCCeEEEEcCCcchhHHHHHhc------CCcEEEEcCCHHHHHHH
Q 024647            3 ELFIKQAKQYAETRPNYPEELFKFITSKTT-----NHELAWDVGTGSGQAAASLSGI------FENVIGTETSPKQIEFA   71 (265)
Q Consensus         3 ~~f~~~a~~Y~~~rp~y~~~l~~~l~~~~~-----~~~~vlDvGcG~G~~~~~l~~~------~~~v~~vD~s~~~~~~a   71 (265)
                      ..|+++.--|++    |.+.+...|....+     ...+++-+|+|-|-+..+..+.      --++++||.+|.++-..
T Consensus       336 etFEkD~VKY~~----Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL  411 (649)
T KOG0822|consen  336 ETFEKDPVKYDQ----YQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTL  411 (649)
T ss_pred             hhhhccchHHHH----HHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhh
Confidence            568888888888    67777777776643     2356899999999777765432      12589999999998877


Q ss_pred             HcCCCceEEecCCccchhhhhhccCCCCceeEEEeccccccCC---hhHHHHHHHHHhcCCCcEEEEE
Q 024647           72 TKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFD---LPQFYNQVKWVLKKPNGVIATW  136 (265)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~---~~~~l~~~~~~Lk~pgG~l~~~  136 (265)
                      +. -|.......+.++..|+..+..+.+..|++++-..-..-|   -+..|.-+.+.|| |+|+.+=.
T Consensus       412 ~~-~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSELLGSFGDNELSPECLDG~q~fLk-pdgIsIP~  477 (649)
T KOG0822|consen  412 QN-RNFECWDNRVTIISSDMRKWNAPREQADIIVSELLGSFGDNELSPECLDGAQKFLK-PDGISIPS  477 (649)
T ss_pred             hh-hchhhhcCeeEEEeccccccCCchhhccchHHHhhccccCccCCHHHHHHHHhhcC-CCceEccc
Confidence            65 2333333344444489999885568899998754222223   2579999999999 99887743

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=96.97  E-value=0.0032  Score=47.61  Aligned_cols=93  Identities=17%  Similarity=0.167  Sum_probs=57.2

Q ss_pred             cEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCCCCceeEEEecccc-ccCC------h---hHHH
Q 024647           57 NVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAM-HWFD------L---PQFY  119 (265)
Q Consensus        57 ~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~-~~~~------~---~~~l  119 (265)
                      +|+|.|+-+..++..+++       .++.++..+.    +.+... .+.+++|+++.+... .=-|      +   -.++
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sH----e~l~~~-i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al   75 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSH----ENLDEY-IPEGPVDAAIFNLGYLPGGDKSITTKPETTLKAL   75 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-G----GGGGGT---S--EEEEEEEESB-CTS-TTSB--HHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCH----HHHHhh-CccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHH
Confidence            589999999999987752       3588888665    444443 233689999998742 2113      2   2688


Q ss_pred             HHHHHHhcCCCcEEEEEecCCCCCChHHHHhhcccc
Q 024647          120 NQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQPFY  155 (265)
Q Consensus       120 ~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~~~~~  155 (265)
                      +.+.++|+ |||.+++..|....-..+-.++..+|.
T Consensus        76 ~~al~lL~-~gG~i~iv~Y~GH~gG~eE~~av~~~~  110 (140)
T PF06962_consen   76 EAALELLK-PGGIITIVVYPGHPGGKEESEAVEEFL  110 (140)
T ss_dssp             HHHHHHEE-EEEEEEEEE--STCHHHHHHHHHHHHH
T ss_pred             HHHHHhhc-cCCEEEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999 999999877764443333333444444

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=96.87  E-value=0.0015  Score=59.06  Aligned_cols=127  Identities=18%  Similarity=0.183  Sum_probs=71.3

Q ss_pred             hHHHHHHHHHhhhCCCCcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEec
Q 024647            3 ELFIKQAKQYAETRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELT   82 (265)
Q Consensus         3 ~~f~~~a~~Y~~~rp~y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~   82 (265)
                      +.|..+...+.+.-..| ..+..... ....-..|+|..+|.|.++.+|.+.-  |......|.  .....+ .+-+..+
T Consensus       337 e~F~~Dt~~Wk~~V~~Y-~~l~~~~i-~~~~iRNVMDMnAg~GGFAAAL~~~~--VWVMNVVP~--~~~ntL-~vIydRG  409 (506)
T PF03141_consen  337 EEFKEDTKHWKKRVSHY-KKLLGLAI-KWGRIRNVMDMNAGYGGFAAALIDDP--VWVMNVVPV--SGPNTL-PVIYDRG  409 (506)
T ss_pred             HHHHHHHHHHHHHHHHH-HHhhcccc-cccceeeeeeecccccHHHHHhccCC--ceEEEeccc--CCCCcc-hhhhhcc
Confidence            45666666665533333 11221000 11233579999999999999998654  333333222  011111 1112221


Q ss_pred             CCccchhhhhhccCCCCceeEEEeccccc----cCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647           83 SPAMSIAELEQNVAAQSTVDLVTIAQAMH----WFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        83 ~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~----~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      .+-..+.==|.++.-+.+||+|.++..+-    ..+...++-|+.|+|+ |+|.+++-+
T Consensus       410 LIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILR-P~G~~iiRD  467 (506)
T PF03141_consen  410 LIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILR-PGGWVIIRD  467 (506)
T ss_pred             cchhccchhhccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcC-CCceEEEec
Confidence            11001011144556678999999987553    2356789999999999 999999844

; GO: 0008168 methyltransferase activity

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=96.83  E-value=0.02  Score=50.16  Aligned_cols=96  Identities=15%  Similarity=0.189  Sum_probs=64.3

Q ss_pred             CCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647           33 NHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA  109 (265)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~  109 (265)
                      ++++||-.|||. |.++..+++. +. +|+++|.+++.++.++++.....+...-    .++..+....+.+|+|+... 
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~----~~~~~~~~~~g~~D~vid~~-  243 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQN----DDLDHYKAEKGYFDVSFEVS-  243 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCc----ccHHHHhccCCCCCEEEECC-
Confidence            567888899985 7777777765 45 5999999999999998753222222110    12222221223589988652 


Q ss_pred             cccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          110 MHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       110 ~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                          .....+..+.++|+ +||++++...
T Consensus       244 ----G~~~~~~~~~~~l~-~~G~iv~~G~  267 (343)
T PRK09880        244 ----GHPSSINTCLEVTR-AKGVMVQVGM  267 (343)
T ss_pred             ----CCHHHHHHHHHHhh-cCCEEEEEcc
Confidence                23457888999999 9999987654

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=96.81  E-value=0.028  Score=47.79  Aligned_cols=68  Identities=15%  Similarity=0.238  Sum_probs=52.0

Q ss_pred             hCCCCcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCC---cEEEEcCCHHHHHHHHcC-----CCceEEecCC
Q 024647           15 TRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFE---NVIGTETSPKQIEFATKL-----PNIRYELTSP   84 (265)
Q Consensus        15 ~rp~y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~   84 (265)
                      +-|..-.+.++.|..  .++...+|.--|.|..+..+.+.++   +++|+|-++.+++.|++.     .++.++..+.
T Consensus         7 HipVLl~E~i~~L~~--~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F   82 (314)
T COG0275           7 HIPVLLNEVVELLAP--KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNF   82 (314)
T ss_pred             ccchHHHHHHHhccc--CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcH
Confidence            445555555555532  4558899999999999999999874   699999999999999862     3677777553

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=96.80  E-value=0.0067  Score=53.80  Aligned_cols=26  Identities=15%  Similarity=0.471  Sum_probs=21.2

Q ss_pred             hhhhhccCCCCceeEEEeccccccCC
Q 024647           89 AELEQNVAAQSTVDLVTIAQAMHWFD  114 (265)
Q Consensus        89 ~d~~~~~~~~~~~Dlv~~~~~~~~~~  114 (265)
                      +.+..--+|.++.++++++.++||+.
T Consensus       151 GSFY~RLfP~~Slh~~~Ss~slHWLS  176 (386)
T PLN02668        151 GSFYRRLFPARSIDVFHSAFSLHWLS  176 (386)
T ss_pred             ccccccccCCCceEEEEeeccceecc
Confidence            44544447999999999999999984

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=96.78  E-value=0.005  Score=51.01  Aligned_cols=109  Identities=13%  Similarity=0.156  Sum_probs=66.0

Q ss_pred             HHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC-----CCceEEecCCccchhhhhh
Q 024647           21 EELFKFITSKTTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL-----PNIRYELTSPAMSIAELEQ   93 (265)
Q Consensus        21 ~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~d~~~   93 (265)
                      +.+++.+...++++.+|+|||||.==++..+....  ..++|+|++..+++.....     .+.+...       .|+..
T Consensus        93 d~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v-------~Dl~~  165 (251)
T PF07091_consen   93 DEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARV-------RDLLS  165 (251)
T ss_dssp             HHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEE-------E-TTT
T ss_pred             HHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeE-------eeeec
Confidence            45556666666778999999999988888877654  4799999999999987652     3333433       33332


Q ss_pred             ccCCCCceeEEEeccccccCChhH--HHHHHHHHhcCCCcEEEEEecC
Q 024647           94 NVAAQSTVDLVTIAQAMHWFDLPQ--FYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        94 ~~~~~~~~Dlv~~~~~~~~~~~~~--~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      - .+..+.|+.+..=.+|.++.+.  ..-++...++  .=.++++.+.
T Consensus       166 ~-~~~~~~DlaLllK~lp~le~q~~g~g~~ll~~~~--~~~~vVSfPt  210 (251)
T PF07091_consen  166 D-PPKEPADLALLLKTLPCLERQRRGAGLELLDALR--SPHVVVSFPT  210 (251)
T ss_dssp             S-HTTSEESEEEEET-HHHHHHHSTTHHHHHHHHSC--ESEEEEEEES
T ss_pred             c-CCCCCcchhhHHHHHHHHHHHhcchHHHHHHHhC--CCeEEEeccc
Confidence            2 2567899999988888775432  2233334443  2244555543

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=96.76  E-value=0.0029  Score=51.77  Aligned_cols=57  Identities=23%  Similarity=0.285  Sum_probs=45.4

Q ss_pred             CCCCcHHHHHHHHhhC-CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHH
Q 024647           16 RPNYPEELFKFITSKT-TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFAT   72 (265)
Q Consensus        16 rp~y~~~l~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~   72 (265)
                      --..|.++++++.... ++++.|||-=||+|+.+.+..+.+.+.+|+|+++..++.|+
T Consensus       173 ~~~kP~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~  230 (231)
T PF01555_consen  173 PTQKPVELIERLIKASTNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAK  230 (231)
T ss_dssp             TT-S-HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHH
T ss_pred             eecCCHHHHHHHHHhhhccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhc
Confidence            3456889999987654 68899999999999999999999999999999999999886

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=96.74  E-value=0.02  Score=51.14  Aligned_cols=105  Identities=16%  Similarity=0.150  Sum_probs=69.4

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhcCC--cEEEEcCCHHHHHHHHcCCCceEEecCCc-cchhhhhhccCCCCceeEEEec
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGIFE--NVIGTETSPKQIEFATKLPNIRYELTSPA-MSIAELEQNVAAQSTVDLVTIA  107 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~Dlv~~~  107 (265)
                      .++.+||.+|||+ |..+..+++...  +++++|.++++++.+++..+...+..... .....+..+ .....+|+|+..
T Consensus       183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~-~~~~~~D~vld~  261 (386)
T cd08283         183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALREL-TGGRGPDVCIDA  261 (386)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHH-cCCCCCCEEEEC
Confidence            4567899999998 888888887653  59999999999999887533433321110 001112222 233469999875


Q ss_pred             ccc---------------ccC-ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          108 QAM---------------HWF-DLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       108 ~~~---------------~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      ..-               +-. +....+.++.+.|+ ++|.++....
T Consensus       262 vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~G~iv~~g~  307 (386)
T cd08283         262 VGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVR-KGGTVSIIGV  307 (386)
T ss_pred             CCCcccccccccccccccccccCchHHHHHHHHHhc-cCCEEEEEcC
Confidence            321               111 34668899999999 9999987543

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=96.68  E-value=0.013  Score=51.30  Aligned_cols=79  Identities=15%  Similarity=0.213  Sum_probs=40.7

Q ss_pred             CCCCCeEEEEcCCcchhHHHHHh--------cC---C-------cEEEEcCCHHHHHHH-----------HcCCCceEEe
Q 024647           31 TTNHELAWDVGTGSGQAAASLSG--------IF---E-------NVIGTETSPKQIEFA-----------TKLPNIRYEL   81 (265)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~--------~~---~-------~v~~vD~s~~~~~~a-----------~~~~~~~~~~   81 (265)
                      .+...+|+|+||.+|..|..+..        ++   .       .|+--|.-..=-...           ....+ -|..
T Consensus        14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~-~f~~   92 (334)
T PF03492_consen   14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRN-YFVS   92 (334)
T ss_dssp             TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTS-EEEE
T ss_pred             CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCce-EEEE
Confidence            35567899999999988887642        11   1       366666543221111           11122 2322


Q ss_pred             cCCccchhhhhhccCCCCceeEEEeccccccCC
Q 024647           82 TSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFD  114 (265)
Q Consensus        82 ~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~  114 (265)
                      +-+    +.+..--+|+++.|+++++.++||+.
T Consensus        93 gvp----gSFy~rLfP~~Svh~~~Ss~alHWLS  121 (334)
T PF03492_consen   93 GVP----GSFYGRLFPSNSVHFGHSSYALHWLS  121 (334)
T ss_dssp             EEE----S-TTS--S-TT-EEEEEEES-TTB-S
T ss_pred             ecC----chhhhccCCCCceEEEEEechhhhcc
Confidence            211    44444447999999999999999984

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.68  E-value=0.0014  Score=49.93  Aligned_cols=47  Identities=11%  Similarity=0.232  Sum_probs=39.1

Q ss_pred             hccCCCCceeEEEeccccccC---ChhHHHHHHHHHhcCCCcEEEEEecCC
Q 024647           93 QNVAAQSTVDLVTIAQAMHWF---DLPQFYNQVKWVLKKPNGVIATWCYTV  140 (265)
Q Consensus        93 ~~~~~~~~~Dlv~~~~~~~~~---~~~~~l~~~~~~Lk~pgG~l~~~~~~~  140 (265)
                      ..++.++++|+|.+...+.++   +-..++++|+|.|| |||.|-+..+..
T Consensus        40 e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lr-p~G~LriAvPdl   89 (185)
T COG4627          40 ESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLR-PGGKLRIAVPDL   89 (185)
T ss_pred             hccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhC-cCcEEEEEcCCc
Confidence            345789999999999988776   33479999999999 999999977653

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=96.68  E-value=0.0081  Score=47.69  Aligned_cols=100  Identities=21%  Similarity=0.090  Sum_probs=64.4

Q ss_pred             CCCCCeEEEEcCCcchhHHHHHhcC-C--cEEEEcCCHH----------HHHHHHc--CCCceEEecCCccchhhhhhcc
Q 024647           31 TTNHELAWDVGTGSGQAAASLSGIF-E--NVIGTETSPK----------QIEFATK--LPNIRYELTSPAMSIAELEQNV   95 (265)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~~-~--~v~~vD~s~~----------~~~~a~~--~~~~~~~~~~~~~~~~d~~~~~   95 (265)
                      ++++++|+|+=.|.|.+|+-++... +  .|++.-+.+.          +-..+++  +.|+....       .++-.++
T Consensus        46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~-------~~~~A~~  118 (238)
T COG4798          46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIG-------KPLVALG  118 (238)
T ss_pred             cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhC-------CcccccC
Confidence            4678999999999999999998763 2  4666544433          2222221  23443333       2233343


Q ss_pred             CCCCceeEEEeccccccC--------ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           96 AAQSTVDLVTIAQAMHWF--------DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        96 ~~~~~~Dlv~~~~~~~~~--------~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                       +....|+++.++.-|-+        ...++..++++.|| |||++.+.+..
T Consensus       119 -~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LK-PGGv~~V~dH~  168 (238)
T COG4798         119 -APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALK-PGGVYLVEDHR  168 (238)
T ss_pred             -CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcC-CCcEEEEEecc
Confidence             45567887775543322        23578899999999 99999987664

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=96.63  E-value=0.019  Score=52.97  Aligned_cols=104  Identities=17%  Similarity=0.159  Sum_probs=68.1

Q ss_pred             CCCeEEEEcCCc-chhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCcc-----------chhhh-----hhc
Q 024647           33 NHELAWDVGTGS-GQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAM-----------SIAEL-----EQN   94 (265)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-----------~~~d~-----~~~   94 (265)
                      ++.+|+-+|||. |..+...++. +++|+++|.++..+++++.+ +.++...+..-           ...+.     +.+
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl-GA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~  242 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM-GAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF  242 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-CCeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence            578999999998 8888877765 67899999999999999875 34433211100           00010     000


Q ss_pred             cCCCCceeEEEeccccccCChhHH-HHHHHHHhcCCCcEEEEEec
Q 024647           95 VAAQSTVDLVTIAQAMHWFDLPQF-YNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        95 ~~~~~~~Dlv~~~~~~~~~~~~~~-l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      ......+|+|+..-...--..+.+ .+++.+.+| |||+++....
T Consensus       243 ~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mk-pGgvIVdvg~  286 (509)
T PRK09424        243 AEQAKEVDIIITTALIPGKPAPKLITAEMVASMK-PGSVIVDLAA  286 (509)
T ss_pred             HhccCCCCEEEECCCCCcccCcchHHHHHHHhcC-CCCEEEEEcc
Confidence            001146999998755433222344 599999999 9999886544

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=96.61  E-value=0.015  Score=43.19  Aligned_cols=91  Identities=21%  Similarity=0.170  Sum_probs=64.0

Q ss_pred             CcchhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccccccCChhHHHHH
Q 024647           43 GSGQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQ  121 (265)
Q Consensus        43 G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~  121 (265)
                      |.|..+..+++. +.+|+++|.++.-++.++++....+....-......+..+ .+...+|+|+-.     ......++.
T Consensus         1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~-~~~~~~d~vid~-----~g~~~~~~~   74 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIREL-TGGRGVDVVIDC-----VGSGDTLQE   74 (130)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHH-TTTSSEEEEEES-----SSSHHHHHH
T ss_pred             ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcccccccccccccccccccc-cccccceEEEEe-----cCcHHHHHH
Confidence            457888888875 5689999999999999998643333333221122333333 244589999965     334689999


Q ss_pred             HHHHhcCCCcEEEEEecCC
Q 024647          122 VKWVLKKPNGVIATWCYTV  140 (265)
Q Consensus       122 ~~~~Lk~pgG~l~~~~~~~  140 (265)
                      +..+|+ ++|++++.....
T Consensus        75 ~~~~l~-~~G~~v~vg~~~   92 (130)
T PF00107_consen   75 AIKLLR-PGGRIVVVGVYG   92 (130)
T ss_dssp             HHHHEE-EEEEEEEESSTS
T ss_pred             HHHHhc-cCCEEEEEEccC
Confidence            999999 999999876654

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.60  E-value=0.0027  Score=51.54  Aligned_cols=115  Identities=17%  Similarity=0.188  Sum_probs=74.2

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcC--------C---cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhc--cCCCC
Q 024647           33 NHELAWDVGTGSGQAAASLSGIF--------E---NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQN--VAAQS   99 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~--------~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~   99 (265)
                      .-.+++|+.+-+|..++-|.++.        .   +|++||+.+-     ...+++.-.+++++-. ..++.+  .+..+
T Consensus        41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----aPI~GV~qlq~DIT~~-stae~Ii~hfgge  114 (294)
T KOG1099|consen   41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----APIEGVIQLQGDITSA-STAEAIIEHFGGE  114 (294)
T ss_pred             hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----CccCceEEeecccCCH-hHHHHHHHHhCCC
Confidence            34679999999999999887642        1   2999998654     2345666666443211 111221  14567


Q ss_pred             ceeEEEecc-----ccccCCh-------hHHHHHHHHHhcCCCcEEEEEecCCCCC---ChHHHHhhccc
Q 024647          100 TVDLVTIAQ-----AMHWFDL-------PQFYNQVKWVLKKPNGVIATWCYTVPEV---NVSVDAVFQPF  154 (265)
Q Consensus       100 ~~Dlv~~~~-----~~~~~~~-------~~~l~~~~~~Lk~pgG~l~~~~~~~~~~---~~~~~~~~~~~  154 (265)
                      +.|+|+|..     .+|-+|.       -.+++-...+|+ |||.|+.-.++....   ...++..|..+
T Consensus       115 kAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk-~Gg~FVaKifRg~~tslLysql~~ff~kv  183 (294)
T KOG1099|consen  115 KADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLK-PGGSFVAKIFRGRDTSLLYSQLRKFFKKV  183 (294)
T ss_pred             CccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheec-CCCeeehhhhccCchHHHHHHHHHHhhce
Confidence            899999966     6787752       256777889999 999999755543322   44555555443

>PRK10742 putative methyltransferase; Provisional

Probab=96.53  E-value=0.02  Score=47.58  Aligned_cols=91  Identities=13%  Similarity=0.019  Sum_probs=57.2

Q ss_pred             eEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc---C----CCceE-EecCCccchhhhhhc-cCCCCceeEEEe
Q 024647           36 LAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK---L----PNIRY-ELTSPAMSIAELEQN-VAAQSTVDLVTI  106 (265)
Q Consensus        36 ~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~---~----~~~~~-~~~~~~~~~~d~~~~-~~~~~~~Dlv~~  106 (265)
                      +|||+-+|+|..+..++.++++|+++|-++.+....+.   .    +.+.. .....+++.+|...+ .....+||+|+.
T Consensus        91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVVYl  170 (250)
T PRK10742         91 DVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVYL  170 (250)
T ss_pred             EEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEEEE
Confidence            89999999999999999999999999999998876553   1    01010 001223333444333 212347999998


Q ss_pred             ccccccCChhHHHHHHHHHh
Q 024647          107 AQAMHWFDLPQFYNQVKWVL  126 (265)
Q Consensus       107 ~~~~~~~~~~~~l~~~~~~L  126 (265)
                      .-.+.+-...+..++-.|++
T Consensus       171 DPMfp~~~ksa~vkk~mr~~  190 (250)
T PRK10742        171 DPMFPHKQKSALVKKEMRVF  190 (250)
T ss_pred             CCCCCCCccccchhhhHHHH
Confidence            87766543333333333444

>PRK11524 putative methyltransferase; Provisional

Probab=96.49  E-value=0.008  Score=51.44  Aligned_cols=57  Identities=23%  Similarity=0.234  Sum_probs=50.6

Q ss_pred             CCcHHHHHHHHhhC-CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC
Q 024647           18 NYPEELFKFITSKT-TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL   74 (265)
Q Consensus        18 ~y~~~l~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~   74 (265)
                      ..|.+|++.+.... .+++.|||-=||+|+.+.+..+.+.+.+|+|++++-++.|+++
T Consensus       192 ~kP~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~R  249 (284)
T PRK11524        192 QKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRR  249 (284)
T ss_pred             cChHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHH
Confidence            55788999877654 7889999999999999999999999999999999999988753

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=96.34  E-value=0.013  Score=47.62  Aligned_cols=90  Identities=20%  Similarity=0.113  Sum_probs=54.8

Q ss_pred             EEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647           37 AWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIA  107 (265)
Q Consensus        37 vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~  107 (265)
                      |.||||--|.++..|.+.+.  +++++|+++.-++.|+..       ..+....+++      ++.++ +.+..|.|+.+
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdG------L~~l~-~~e~~d~ivIA   73 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDG------LEVLK-PGEDVDTIVIA   73 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SG------GGG---GGG---EEEEE
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCc------ccccC-CCCCCCEEEEe
Confidence            68999999999999999875  799999999999998751       3577777432      34342 33337888865


Q ss_pred             cccccCChhHHHHHHHHHhcCCCcEEEE
Q 024647          108 QAMHWFDLPQFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus       108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~  135 (265)
                      ..--- -....+.+....++ ....|++
T Consensus        74 GMGG~-lI~~ILe~~~~~~~-~~~~lIL   99 (205)
T PF04816_consen   74 GMGGE-LIIEILEAGPEKLS-SAKRLIL   99 (205)
T ss_dssp             EE-HH-HHHHHHHHTGGGGT-T--EEEE
T ss_pred             cCCHH-HHHHHHHhhHHHhc-cCCeEEE
Confidence            42110 01245555555565 4556665

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=96.30  E-value=0.032  Score=45.10  Aligned_cols=117  Identities=14%  Similarity=0.175  Sum_probs=61.2

Q ss_pred             CCcHHHHH--HHHhhCCCCCeEEEEcCCcchhHHHHHhc---C---CcEEEEcCCHHHHH-HHHcC----CCceEEecCC
Q 024647           18 NYPEELFK--FITSKTTNHELAWDVGTGSGQAAASLSGI---F---ENVIGTETSPKQIE-FATKL----PNIRYELTSP   84 (265)
Q Consensus        18 ~y~~~l~~--~l~~~~~~~~~vlDvGcG~G~~~~~l~~~---~---~~v~~vD~s~~~~~-~a~~~----~~~~~~~~~~   84 (265)
                      .+|.+++.  .|.... +++.|+|+|.-.|..+..+++.   +   .+|+|||++..... .+.+.    +.+++.+++.
T Consensus        16 q~P~Dm~~~qeli~~~-kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds   94 (206)
T PF04989_consen   16 QYPQDMVAYQELIWEL-KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDS   94 (206)
T ss_dssp             S-HHHHHHHHHHHHHH---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-S
T ss_pred             cCHHHHHHHHHHHHHh-CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCC
Confidence            45666543  344333 4488999999999999887652   3   57999999655443 22332    6899999765


Q ss_pred             ccchhhhhhccC--CCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647           85 AMSIAELEQNVA--AQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        85 ~~~~~d~~~~~~--~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      ... +-+.+...  ......+|+-. +-|-- +..+.|+....+++ +|+.+++.+.
T Consensus        95 ~d~-~~~~~v~~~~~~~~~vlVilD-s~H~~~hvl~eL~~y~plv~-~G~Y~IVeDt  148 (206)
T PF04989_consen   95 IDP-EIVDQVRELASPPHPVLVILD-SSHTHEHVLAELEAYAPLVS-PGSYLIVEDT  148 (206)
T ss_dssp             SST-HHHHTSGSS----SSEEEEES-S----SSHHHHHHHHHHT---TT-EEEETSH
T ss_pred             CCH-HHHHHHHHhhccCCceEEEEC-CCccHHHHHHHHHHhCccCC-CCCEEEEEec
Confidence            211 11222211  12234455543 33332 55678888899999 9999998543

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PHA01634 hypothetical protein

Probab=96.30  E-value=0.014  Score=43.06  Aligned_cols=71  Identities=13%  Similarity=-0.051  Sum_probs=49.3

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647           33 NHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIA  107 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~  107 (265)
                      .+.+|+|||++-|..+..++-+++ +|+++++++...+..++.-+...++..+    ..-..++-.-++||+....
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~----v~~~eW~~~Y~~~Di~~iD   99 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKA----VMKGEWNGEYEDVDIFVMD   99 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeece----eecccccccCCCcceEEEE
Confidence            568899999999999999999988 5999999999999887521111122111    1112344445678887753

>PRK13699 putative methylase; Provisional

Probab=96.19  E-value=0.017  Score=47.78  Aligned_cols=56  Identities=16%  Similarity=0.128  Sum_probs=49.5

Q ss_pred             CCcHHHHHHHHhh-CCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc
Q 024647           18 NYPEELFKFITSK-TTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK   73 (265)
Q Consensus        18 ~y~~~l~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~   73 (265)
                      ..|.++++.+... ..+++.|||-=||+|+...+..+.+.+.+|+|+++...+.+.+
T Consensus       147 ~kP~~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~  203 (227)
T PRK13699        147 EKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQ  203 (227)
T ss_pred             CCcHHHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHH
Confidence            5688999988754 4688999999999999999999999999999999999988864

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=96.16  E-value=0.017  Score=48.90  Aligned_cols=101  Identities=17%  Similarity=0.183  Sum_probs=72.2

Q ss_pred             CCCCCeEEEEcCCcchhHHHHHhc--CCcEEEEcCCHHHHHHHHcC----------CCceEEecCCccchhhhhhccCCC
Q 024647           31 TTNHELAWDVGTGSGQAAASLSGI--FENVIGTETSPKQIEFATKL----------PNIRYELTSPAMSIAELEQNVAAQ   98 (265)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~~~~d~~~~~~~~   98 (265)
                      .+.+++||-||-|.|.+.+..+++  ..+++-+|++...++..+++          +.+....+++    ..+-+. ...
T Consensus       119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG----~~fl~~-~~~  193 (337)
T KOG1562|consen  119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDG----FLFLED-LKE  193 (337)
T ss_pred             CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccH----HHHHHH-hcc
Confidence            466789999999999999988876  34799999999999887752          4566666543    222222 246


Q ss_pred             CceeEEEeccccccCC-----hhHHHHHHHHHhcCCCcEEEEEe
Q 024647           99 STVDLVTIAQAMHWFD-----LPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        99 ~~~Dlv~~~~~~~~~~-----~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      ++||+|+....=.-.+     ....+..+.+.|| |||++++..
T Consensus       194 ~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk-~dgv~~~q~  236 (337)
T KOG1562|consen  194 NPFDVIITDSSDPVGPACALFQKPYFGLVLDALK-GDGVVCTQG  236 (337)
T ss_pred             CCceEEEEecCCccchHHHHHHHHHHHHHHHhhC-CCcEEEEec
Confidence            7999999754222111     1357788999999 999998744

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=96.14  E-value=0.021  Score=49.11  Aligned_cols=89  Identities=15%  Similarity=0.219  Sum_probs=57.4

Q ss_pred             hCCCCcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC-----CCceEEecCCccc
Q 024647           15 TRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL-----PNIRYELTSPAMS   87 (265)
Q Consensus        15 ~rp~y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~   87 (265)
                      +.|..-.+.++.|.  ..++..++|.--|.|..+..+++..+  +++|+|.++.+++.+++.     .++.+...+.   
T Consensus         4 H~PVll~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F---   78 (310)
T PF01795_consen    4 HIPVLLKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNF---   78 (310)
T ss_dssp             ---TTHHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-G---
T ss_pred             eecccHHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccH---
Confidence            56888888888876  34567899999999999999998754  799999999999988753     4566666554   


Q ss_pred             hhhhhhcc--C-CCCceeEEEeccc
Q 024647           88 IAELEQNV--A-AQSTVDLVTIAQA  109 (265)
Q Consensus        88 ~~d~~~~~--~-~~~~~Dlv~~~~~  109 (265)
                       .++...-  . ....+|.|+....
T Consensus        79 -~~l~~~l~~~~~~~~~dgiL~DLG  102 (310)
T PF01795_consen   79 -SNLDEYLKELNGINKVDGILFDLG  102 (310)
T ss_dssp             -GGHHHHHHHTTTTS-EEEEEEE-S
T ss_pred             -HHHHHHHHHccCCCccCEEEEccc
Confidence             2322221  1 3357888887663

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=95.96  E-value=0.027  Score=48.03  Aligned_cols=120  Identities=17%  Similarity=0.177  Sum_probs=72.2

Q ss_pred             hCCCCcHHHHHHHHhhCCC------CCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHH-------Hc------C-
Q 024647           15 TRPNYPEELFKFITSKTTN------HELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFA-------TK------L-   74 (265)
Q Consensus        15 ~rp~y~~~l~~~l~~~~~~------~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a-------~~------~-   74 (265)
                      -|...-.-+++.|.+..++      ..+||-=|||.|.++..|+..+.++-|=|.|--|+=..       +.      + 
T Consensus       126 ERd~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYP  205 (369)
T KOG2798|consen  126 ERDQLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYP  205 (369)
T ss_pred             hhhhhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEe
Confidence            4443345567777766554      45799999999999999999988888878877775422       11      0 


Q ss_pred             --------------------CCceEE-----ecCCccchhhhhhc-c--CCCCceeEEEeccccccC-ChhHHHHHHHHH
Q 024647           75 --------------------PNIRYE-----LTSPAMSIAELEQN-V--AAQSTVDLVTIAQAMHWF-DLPQFYNQVKWV  125 (265)
Q Consensus        75 --------------------~~~~~~-----~~~~~~~~~d~~~~-~--~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~  125 (265)
                                          +.+.-.     ..+..+-.||+-.. +  ...+++|+|+..+-+--- +.-..++.+..+
T Consensus       206 fIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~i  285 (369)
T KOG2798|consen  206 FIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKI  285 (369)
T ss_pred             eeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHh
Confidence                                000000     00000111232221 1  122469999877433322 344789999999


Q ss_pred             hcCCCcEEEE
Q 024647          126 LKKPNGVIAT  135 (265)
Q Consensus       126 Lk~pgG~l~~  135 (265)
                      |+ |||+.+=
T Consensus       286 Lk-~GGvWiN  294 (369)
T KOG2798|consen  286 LK-PGGVWIN  294 (369)
T ss_pred             cc-CCcEEEe
Confidence            99 9998763

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=95.89  E-value=0.1  Score=45.77  Aligned_cols=92  Identities=14%  Similarity=0.117  Sum_probs=60.8

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc---CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI---FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIA  107 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~  107 (265)
                      .++++||-+|||. |.++..++++   ..+|+++|.++.-++.++.. +.....       .+   +. ....+|+|+-.
T Consensus       162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~-~~~~~~-------~~---~~-~~~g~d~viD~  229 (341)
T cd08237         162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFA-DETYLI-------DD---IP-EDLAVDHAFEC  229 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhc-Cceeeh-------hh---hh-hccCCcEEEEC
Confidence            4578999999986 7777676664   24799999999988888752 221111       11   11 11248988854


Q ss_pred             cccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      ..-.  .....+++..++|+ +||++++...
T Consensus       230 ~G~~--~~~~~~~~~~~~l~-~~G~iv~~G~  257 (341)
T cd08237         230 VGGR--GSQSAINQIIDYIR-PQGTIGLMGV  257 (341)
T ss_pred             CCCC--ccHHHHHHHHHhCc-CCcEEEEEee
Confidence            3210  02467899999999 9999987654

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=95.89  E-value=0.076  Score=44.24  Aligned_cols=104  Identities=11%  Similarity=0.007  Sum_probs=63.5

Q ss_pred             CCCeEEEEcCCcchhHHHHHhc-CCcEEEEcCCHHHHHHHHc--C-----CC--ceEEecCCccchhhhhhccCCCCcee
Q 024647           33 NHELAWDVGTGSGQAAASLSGI-FENVIGTETSPKQIEFATK--L-----PN--IRYELTSPAMSIAELEQNVAAQSTVD  102 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~--~-----~~--~~~~~~~~~~~~~d~~~~~~~~~~~D  102 (265)
                      ...+|||+|.|+|..+...+.. +++|...|+...+......  .     .+  .........|-.........+ ..+|
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~-~~~D  164 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLP-NPFD  164 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccC-Cccc
Confidence            4567999999999888888774 5688888887766543221  1     11  011111111111111111112 1299


Q ss_pred             EEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          103 LVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       103 lv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      +|+++.++... ..+.+...++..|. -+|++.+..+
T Consensus       165 lilasDvvy~~~~~e~Lv~tla~ll~-~~~~i~l~~~  200 (248)
T KOG2793|consen  165 LILASDVVYEEESFEGLVKTLAFLLA-KDGTIFLAYP  200 (248)
T ss_pred             EEEEeeeeecCCcchhHHHHHHHHHh-cCCeEEEEEe
Confidence            99999988776 67788888889998 6885544443

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=95.81  E-value=0.13  Score=45.31  Aligned_cols=100  Identities=16%  Similarity=0.201  Sum_probs=63.7

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      .++++||-.|||. |.++..+++. +. +|+++|.++..++.++++..-......-......+... .....+|+|+-..
T Consensus       175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~-~~~~g~d~vid~~  253 (358)
T TIGR03451       175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRAL-TGGFGADVVIDAV  253 (358)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHH-hCCCCCCEEEECC
Confidence            4678899899876 7777777765 44 49999999999998876532222221110000112222 1334689888542


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                           .-...+..+.+.|+ +||++++...
T Consensus       254 -----g~~~~~~~~~~~~~-~~G~iv~~G~  277 (358)
T TIGR03451       254 -----GRPETYKQAFYARD-LAGTVVLVGV  277 (358)
T ss_pred             -----CCHHHHHHHHHHhc-cCCEEEEECC
Confidence                 22457788889999 9999987654

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=95.79  E-value=0.13  Score=44.55  Aligned_cols=99  Identities=17%  Similarity=0.175  Sum_probs=64.6

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCcc-chhhhhhccCCCCceeEEEecc
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAM-SIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      .++.+||..|||. |..+..+++. +.+|++++.++...+.+++.. +.......+. ....+ . ......+|+++.. 
T Consensus       164 ~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g-~~~~~~~~~~~~~~~~-~-~~~~~~~D~vid~-  239 (338)
T cd08254         164 KPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELG-ADEVLNSLDDSPKDKK-A-AGLGGGFDVIFDF-  239 (338)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhC-CCEEEcCCCcCHHHHH-H-HhcCCCceEEEEC-
Confidence            4567888888874 7777777764 567999999999998886532 3222211110 00111 1 1245579998854 


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                          ......+.++.+.|+ ++|.++.....
T Consensus       240 ----~g~~~~~~~~~~~l~-~~G~~v~~g~~  265 (338)
T cd08254         240 ----VGTQPTFEDAQKAVK-PGGRIVVVGLG  265 (338)
T ss_pred             ----CCCHHHHHHHHHHhh-cCCEEEEECCC
Confidence                223568889999999 99999876543

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=95.70  E-value=0.14  Score=40.66  Aligned_cols=122  Identities=16%  Similarity=0.168  Sum_probs=78.1

Q ss_pred             hCCC--CcHHHH--HHHHhhCCCCCeEEEEcCCcchhHHHHHh----cC--CcEEEEcCCHHHHHH-HHcCCCceEEecC
Q 024647           15 TRPN--YPEELF--KFITSKTTNHELAWDVGTGSGQAAASLSG----IF--ENVIGTETSPKQIEF-ATKLPNIRYELTS   83 (265)
Q Consensus        15 ~rp~--y~~~l~--~~l~~~~~~~~~vlDvGcG~G~~~~~l~~----~~--~~v~~vD~s~~~~~~-a~~~~~~~~~~~~   83 (265)
                      .+|.  ||.++.  +.|.... ++..|+|.|.-.|..+...+.    .+  .+|+++|++-..++- |++.+.+.|++++
T Consensus        48 G~p~~k~p~D~~~yQellw~~-~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egs  126 (237)
T COG3510          48 GIPCIKSPSDMWNYQELLWEL-QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGS  126 (237)
T ss_pred             cccccCCHHHHHHHHHHHHhc-CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCC
Confidence            5663  466653  3354443 447899999999988888765    34  479999999887653 4446899999976


Q ss_pred             Cccchhhhhhcc-CCCCceeEEEeccccccCC-hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           84 PAMSIAELEQNV-AAQSTVDLVTIAQAMHWFD-LPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        84 ~~~~~~d~~~~~-~~~~~~Dlv~~~~~~~~~~-~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      ...- +-.++.. ...+.--+.+|-.+-|..+ .-+.++....+|. .|-.+++.+..
T Consensus       127 s~dp-ai~eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~plls-aG~Y~vVeDs~  182 (237)
T COG3510         127 STDP-AIAEQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLS-AGDYLVVEDSN  182 (237)
T ss_pred             CCCH-HHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhh-cCceEEEeccc
Confidence            5221 1122222 2233334444555667663 3456777788888 79888886553

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=95.61  E-value=0.06  Score=44.30  Aligned_cols=110  Identities=20%  Similarity=0.151  Sum_probs=71.9

Q ss_pred             CcHHHHHHHHhh-----CCCCCeEEEEcCCcchhHHHHHhcC-C--cEEEEcCCHH----HHHHHHcCCCceEEecCCcc
Q 024647           19 YPEELFKFITSK-----TTNHELAWDVGTGSGQAAASLSGIF-E--NVIGTETSPK----QIEFATKLPNIRYELTSPAM   86 (265)
Q Consensus        19 y~~~l~~~l~~~-----~~~~~~vlDvGcG~G~~~~~l~~~~-~--~v~~vD~s~~----~~~~a~~~~~~~~~~~~~~~   86 (265)
                      |..+|..-|+--     .+++.+||-+|+++|+...++.+.. +  -|++||.|+.    .+..|++++|+-=+.     
T Consensus       137 frSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIi-----  211 (317)
T KOG1596|consen  137 FRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPII-----  211 (317)
T ss_pred             HHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeee-----
Confidence            456666666542     3678899999999999999998864 3  3999999875    455677778875555     


Q ss_pred             chhhhhh---ccCCCCceeEEEeccccccCChh-HHHHHHHHHhcCCCcEEEEEec
Q 024647           87 SIAELEQ---NVAAQSTVDLVTIAQAMHWFDLP-QFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        87 ~~~d~~~---~~~~~~~~Dlv~~~~~~~~~~~~-~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                        +|+..   ....-+-+|+|++.-+  ..|.. .+.-++..-|| +||-+++..-
T Consensus       212 --EDArhP~KYRmlVgmVDvIFaDva--qpdq~RivaLNA~~FLk-~gGhfvisik  262 (317)
T KOG1596|consen  212 --EDARHPAKYRMLVGMVDVIFADVA--QPDQARIVALNAQYFLK-NGGHFVISIK  262 (317)
T ss_pred             --ccCCCchheeeeeeeEEEEeccCC--Cchhhhhhhhhhhhhhc-cCCeEEEEEe
Confidence              33321   1112235677776522  11222 24556778899 9999988544

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=95.58  E-value=0.18  Score=43.87  Aligned_cols=99  Identities=18%  Similarity=0.176  Sum_probs=62.5

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CCc-EEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FEN-VIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      .++++||-+|+|. |.++..+++. +.+ |++++.+++.++.++++.-..+....... ...+.+. .....+|+|+-. 
T Consensus       162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~-~~~~~~~-~~~~~~d~vid~-  238 (339)
T cd08239         162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDD-VQEIREL-TSGAGADVAIEC-  238 (339)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcch-HHHHHHH-hCCCCCCEEEEC-
Confidence            4577888888875 6666666654 567 99999999988888764322222211100 1112222 133469999854 


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                          ......+..+.+.|+ ++|++++...
T Consensus       239 ----~g~~~~~~~~~~~l~-~~G~~v~~g~  263 (339)
T cd08239         239 ----SGNTAARRLALEAVR-PWGRLVLVGE  263 (339)
T ss_pred             ----CCCHHHHHHHHHHhh-cCCEEEEEcC
Confidence                223456778889999 9999987654

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=95.53  E-value=0.012  Score=42.13  Aligned_cols=33  Identities=18%  Similarity=0.103  Sum_probs=28.5

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCH
Q 024647           33 NHELAWDVGTGSGQAAASLSGIFENVIGTETSP   65 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~   65 (265)
                      +....+|+|||.|.+.--|.+.+.+=.|+|.-.
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R~   90 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSEGYPGWGIDARR   90 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhCCCCcccccccc
Confidence            346689999999999999999999888999643

; GO: 0008168 methyltransferase activity

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=95.52  E-value=0.07  Score=45.72  Aligned_cols=77  Identities=14%  Similarity=0.135  Sum_probs=39.2

Q ss_pred             CCeEEEEcCCcc-hhHHHHHh-cCCcEEEEcCCHHHHHHHHcC--------CCceEEecCCccchhh-hhhccCCCCcee
Q 024647           34 HELAWDVGTGSG-QAAASLSG-IFENVIGTETSPKQIEFATKL--------PNIRYELTSPAMSIAE-LEQNVAAQSTVD  102 (265)
Q Consensus        34 ~~~vlDvGcG~G-~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~d-~~~~~~~~~~~D  102 (265)
                      .-++||||||.. .+...-++ .+.+++|+|+++..++.|++.        ..+......-.   .. +..+..+.+.||
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~---~~i~~~i~~~~e~~d  179 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNP---DNIFDGIIQPNERFD  179 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST----SSTTTSTT--S-EE
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCc---cccchhhhcccceee
Confidence            357899999986 44444333 467999999999999999852        23555443210   11 111223456899


Q ss_pred             EEEeccccccC
Q 024647          103 LVTIAQAMHWF  113 (265)
Q Consensus       103 lv~~~~~~~~~  113 (265)
                      +.+|+-.+|-.
T Consensus       180 ftmCNPPFy~s  190 (299)
T PF05971_consen  180 FTMCNPPFYSS  190 (299)
T ss_dssp             EEEE-----SS
T ss_pred             EEecCCccccC
Confidence            99999887755

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=95.49  E-value=0.19  Score=44.57  Aligned_cols=99  Identities=12%  Similarity=0.052  Sum_probs=63.1

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      .++++||-.|+|. |.++..+++. +. +|+++|.++..++.++++....+....-......+...  ..+.+|+|+-..
T Consensus       190 ~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~--~~~g~d~vid~~  267 (371)
T cd08281         190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVREL--TGGGVDYAFEMA  267 (371)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHH--hCCCCCEEEECC
Confidence            4567888899875 7777777764 55 59999999999998886432222221110000112222  123689998642


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                           .....+..+.+.|+ ++|+++....
T Consensus       268 -----G~~~~~~~~~~~l~-~~G~iv~~G~  291 (371)
T cd08281         268 -----GSVPALETAYEITR-RGGTTVTAGL  291 (371)
T ss_pred             -----CChHHHHHHHHHHh-cCCEEEEEcc
Confidence                 22467888899999 9999987554

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>cd08230 glucose_DH Glucose dehydrogenase

Probab=95.45  E-value=0.17  Score=44.58  Aligned_cols=95  Identities=22%  Similarity=0.226  Sum_probs=62.2

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CCcEEEEcC---CHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEe
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FENVIGTET---SPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTI  106 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~---s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~  106 (265)
                      .++.+||-+|||. |.++..+++. +.+|++++.   ++.-++.++++ +........    .+..+. ...+.+|+|+-
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~-Ga~~v~~~~----~~~~~~-~~~~~~d~vid  244 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEEL-GATYVNSSK----TPVAEV-KLVGEFDLIIE  244 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHc-CCEEecCCc----cchhhh-hhcCCCCEEEE
Confidence            3567899999986 7777777765 458999986   67777877764 333322111    111111 12246898886


Q ss_pred             ccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          107 AQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       107 ~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      ..     .....+.++.++|+ +||.+++...
T Consensus       245 ~~-----g~~~~~~~~~~~l~-~~G~~v~~G~  270 (355)
T cd08230         245 AT-----GVPPLAFEALPALA-PNGVVILFGV  270 (355)
T ss_pred             Cc-----CCHHHHHHHHHHcc-CCcEEEEEec
Confidence            53     22457889999999 9999887554

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=95.30  E-value=0.042  Score=46.82  Aligned_cols=67  Identities=18%  Similarity=0.065  Sum_probs=49.2

Q ss_pred             eEEEEcCCcchhHHHHHhcCCc-EEEEcCCHHHHHHHHcC-CCceEEecCCccchhhhhhccCC--CCceeEEEecccc
Q 024647           36 LAWDVGTGSGQAAASLSGIFEN-VIGTETSPKQIEFATKL-PNIRYELTSPAMSIAELEQNVAA--QSTVDLVTIAQAM  110 (265)
Q Consensus        36 ~vlDvGcG~G~~~~~l~~~~~~-v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~d~~~~~~~--~~~~Dlv~~~~~~  110 (265)
                      +++|+-||.|.++..+.+.+.+ +.++|+++..++..+.. ++. ...       +|+.++...  ...+|+++....+
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~-~~~-------~Di~~~~~~~~~~~~D~l~~gpPC   72 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNK-LIE-------GDITKIDEKDFIPDIDLLTGGFPC   72 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCC-Ccc-------CccccCchhhcCCCCCEEEeCCCC
Confidence            5899999999999999988765 78999999999977753 332 223       455554321  3569999987744

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=95.26  E-value=0.26  Score=40.95  Aligned_cols=100  Identities=25%  Similarity=0.209  Sum_probs=63.0

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA  109 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~  109 (265)
                      .++.+||..|+|+ |..+..+++. +.+|++++.++...+.++..................+.  ....+.+|+++....
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~d~vi~~~~  210 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELR--LTGGGGADVVIDAVG  210 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHH--HhcCCCCCEEEECCC
Confidence            4678899999996 6666666654 56899999999888877653211111111000001111  123457999986532


Q ss_pred             cccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          110 MHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       110 ~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                           ....+..+.+.|+ ++|.++.....
T Consensus       211 -----~~~~~~~~~~~l~-~~G~~v~~~~~  234 (271)
T cd05188         211 -----GPETLAQALRLLR-PGGRIVVVGGT  234 (271)
T ss_pred             -----CHHHHHHHHHhcc-cCCEEEEEccC
Confidence                 2257888899999 99999875543

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=95.26  E-value=0.021  Score=48.38  Aligned_cols=100  Identities=17%  Similarity=0.114  Sum_probs=66.0

Q ss_pred             CCCCeEEEEcCCcchhHH-HHHhcCC-cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647           32 TNHELAWDVGTGSGQAAA-SLSGIFE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA  109 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~-~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~  109 (265)
                      ..+..|+|+=+|-|.+|. .+...++ .|.++|.+|..++..++...++.+.....++.+| ...+.++...|.|.....
T Consensus       193 c~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd-~R~~~~~~~AdrVnLGLl  271 (351)
T KOG1227|consen  193 CDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGD-NRNPKPRLRADRVNLGLL  271 (351)
T ss_pred             cccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhcc-ccccCccccchheeeccc
Confidence            344789999999999999 6777777 4999999999999988642222222122222333 334456778888876531


Q ss_pred             cccCChhHHHHHHHHHhcCCCcEEEE
Q 024647          110 MHWFDLPQFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus       110 ~~~~~~~~~l~~~~~~Lk~pgG~l~~  135 (265)
                         ...++....+..+||+.||.++.
T Consensus       272 ---PSse~~W~~A~k~Lk~eggsilH  294 (351)
T KOG1227|consen  272 ---PSSEQGWPTAIKALKPEGGSILH  294 (351)
T ss_pred             ---cccccchHHHHHHhhhcCCcEEE
Confidence               13456667778888845554554

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=95.25  E-value=0.086  Score=48.65  Aligned_cols=100  Identities=18%  Similarity=0.133  Sum_probs=64.7

Q ss_pred             CCCeEEEEcCCc-chhHHHHHh-cCCcEEEEcCCHHHHHHHHcCCCceEEecCC----------------ccchhhhhhc
Q 024647           33 NHELAWDVGTGS-GQAAASLSG-IFENVIGTETSPKQIEFATKLPNIRYELTSP----------------AMSIAELEQN   94 (265)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~----------------~~~~~d~~~~   94 (265)
                      ++.+|+-+|||. |..+..+++ .+++|+++|.++..++.++.+. ..++..+.                +......+.+
T Consensus       163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lG-a~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~  241 (511)
T TIGR00561       163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMG-AEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELF  241 (511)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC-CeEEeccccccccccccceeecCHHHHHHHHHHH
Confidence            468899999997 777777665 4678999999999999888642 33322211                0000011112


Q ss_pred             cCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEE
Q 024647           95 VAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIA  134 (265)
Q Consensus        95 ~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~  134 (265)
                      +..-..+|+|+..-.+.-- .|.-..+++.+.+| ||+.++
T Consensus       242 ~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MK-pGsvIV  281 (511)
T TIGR00561       242 AAQAKEVDIIITTALIPGKPAPKLITEEMVDSMK-AGSVIV  281 (511)
T ss_pred             HHHhCCCCEEEECcccCCCCCCeeehHHHHhhCC-CCCEEE
Confidence            2123469999876554443 33347888999999 999877

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=95.22  E-value=0.032  Score=49.72  Aligned_cols=92  Identities=16%  Similarity=0.115  Sum_probs=57.5

Q ss_pred             eEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647           36 LAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIA  107 (265)
Q Consensus        36 ~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~  107 (265)
                      .|||+|.|||.++.-.++.++ .|+++|.-..|.+.|++.       .+++.+....    .++...+  ....|+++..
T Consensus        69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrS----tev~vg~--~~RadI~v~e  142 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRS----TEVKVGG--SSRADIAVRE  142 (636)
T ss_pred             EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeecccc----ceeeecC--cchhhhhhHh
Confidence            589999999999999988887 599999999999999862       4555555332    1222221  2335555543


Q ss_pred             cccccC---ChhHHHHHHHHHhcCCCcEE
Q 024647          108 QAMHWF---DLPQFYNQVKWVLKKPNGVI  133 (265)
Q Consensus       108 ~~~~~~---~~~~~l~~~~~~Lk~pgG~l  133 (265)
                      ...-.+   ..-..++++.+.|-.+|...
T Consensus       143 ~fdtEligeGalps~qhAh~~L~~~nc~~  171 (636)
T KOG1501|consen  143 DFDTELIGEGALPSLQHAHDMLLVDNCKT  171 (636)
T ss_pred             hhhhhhhccccchhHHHHHHHhcccCCee
Confidence            221111   12346677766664255443

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=95.19  E-value=0.21  Score=43.12  Aligned_cols=86  Identities=20%  Similarity=0.142  Sum_probs=58.8

Q ss_pred             CCCeEEEEcCCc-chhHHHHHhc-CCc-EEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647           33 NHELAWDVGTGS-GQAAASLSGI-FEN-VIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA  109 (265)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~  109 (265)
                      +++++|-+|||. |.++..+++. +.+ |+++|.++..++.+....   ...  .    .+  .   ....+|+|+-.. 
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~---~i~--~----~~--~---~~~g~Dvvid~~-  208 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE---VLD--P----EK--D---PRRDYRAIYDAS-  208 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc---ccC--h----hh--c---cCCCCCEEEECC-
Confidence            456788889986 8888888765 555 778899988887776421   111  0    11  0   234689988652 


Q ss_pred             cccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          110 MHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       110 ~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                          .....++.+.+.|+ ++|++++...
T Consensus       209 ----G~~~~~~~~~~~l~-~~G~iv~~G~  232 (308)
T TIGR01202       209 ----GDPSLIDTLVRRLA-KGGEIVLAGF  232 (308)
T ss_pred             ----CCHHHHHHHHHhhh-cCcEEEEEee
Confidence                23467889999999 9999987654

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=95.18  E-value=0.02  Score=47.25  Aligned_cols=72  Identities=21%  Similarity=0.169  Sum_probs=41.4

Q ss_pred             CeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc-------C--------CCceEEecCCccchhhhhhccCCCC
Q 024647           35 ELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK-------L--------PNIRYELTSPAMSIAELEQNVAAQS   99 (265)
Q Consensus        35 ~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-------~--------~~~~~~~~~~~~~~~d~~~~~~~~~   99 (265)
                      .+|||.-||-|.-+.-++..+++|+++|-||.+....+.       .        ..++.+.++.      .+.+..+++
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~------~~~L~~~~~  150 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA------LEYLRQPDN  150 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C------CCHCCCHSS
T ss_pred             CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH------HHHHhhcCC
Confidence            489999999999999999889999999999988665432       1        1345555332      122335678


Q ss_pred             ceeEEEecccccc
Q 024647          100 TVDLVTIAQAMHW  112 (265)
Q Consensus       100 ~~Dlv~~~~~~~~  112 (265)
                      +||+|+..-.+..
T Consensus       151 s~DVVY~DPMFp~  163 (234)
T PF04445_consen  151 SFDVVYFDPMFPE  163 (234)
T ss_dssp             --SEEEE--S---
T ss_pred             CCCEEEECCCCCC
Confidence            9999999776654

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=95.16  E-value=0.27  Score=41.73  Aligned_cols=97  Identities=15%  Similarity=0.068  Sum_probs=62.5

Q ss_pred             CCCeEEEEcCCc-chhHHHHHhc-CCc-EEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647           33 NHELAWDVGTGS-GQAAASLSGI-FEN-VIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA  109 (265)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~  109 (265)
                      ++++||-+|+|+ |..+..+++. +.+ |+++|.++.-++.++++......... . ....+..+ .....+|+|+-.. 
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~-~-~~~~~~~~-~~~~g~d~vid~~-  195 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPE-V-LAERQGGL-QNGRGVDVALEFS-  195 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCch-h-hHHHHHHH-hCCCCCCEEEECC-
Confidence            567889899875 7777777765 455 99999999988888875321111110 0 00112222 1234689988642 


Q ss_pred             cccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          110 MHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       110 ~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                          .....++.+.+.|+ ++|++++...
T Consensus       196 ----G~~~~~~~~~~~l~-~~G~iv~~G~  219 (280)
T TIGR03366       196 ----GATAAVRACLESLD-VGGTAVLAGS  219 (280)
T ss_pred             ----CChHHHHHHHHHhc-CCCEEEEecc
Confidence                23467888999999 9999987653

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=95.10  E-value=0.086  Score=42.84  Aligned_cols=106  Identities=12%  Similarity=0.012  Sum_probs=64.6

Q ss_pred             HHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC----CCceEEecCCccchhhh-hhcc
Q 024647           23 LFKFITSKTTNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL----PNIRYELTSPAMSIAEL-EQNV   95 (265)
Q Consensus        23 l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~d~-~~~~   95 (265)
                      -+..+.+..+.+.++.||||--+.++..|.+...  .++++|++++.++.|.+.    ...+++....    +|. ..+ 
T Consensus         6 RL~~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~----~dgl~~l-   80 (226)
T COG2384           6 RLTTVANLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRL----GDGLAVL-   80 (226)
T ss_pred             HHHHHHHHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEec----cCCcccc-
Confidence            3445556666666699999999999999998764  699999999999988752    2233333222    332 222 


Q ss_pred             CCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEE
Q 024647           96 AAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus        96 ~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~  135 (265)
                      .++..+|.|+.+..--. -....+.+-.+-|+ .--.+++
T Consensus        81 ~~~d~~d~ivIAGMGG~-lI~~ILee~~~~l~-~~~rlIL  118 (226)
T COG2384          81 ELEDEIDVIVIAGMGGT-LIREILEEGKEKLK-GVERLIL  118 (226)
T ss_pred             CccCCcCEEEEeCCcHH-HHHHHHHHhhhhhc-CcceEEE
Confidence            23447888886542110 11245555555555 2234444

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=95.03  E-value=0.37  Score=42.16  Aligned_cols=99  Identities=13%  Similarity=0.115  Sum_probs=61.5

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CCc-EEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCcee-EEEec
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FEN-VIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVD-LVTIA  107 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D-lv~~~  107 (265)
                      .++++||-.|||+ |..+..+++. +.+ |++++.++.-++.+++..-.......... ...+... .....+| +|+-.
T Consensus       159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~-~~~~~~~-~~~~~~d~~v~d~  236 (347)
T PRK10309        159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMS-APQIQSV-LRELRFDQLILET  236 (347)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcccC-HHHHHHH-hcCCCCCeEEEEC
Confidence            4567888889876 7777777764 455 78999999988888764321222211100 0112222 2334577 55532


Q ss_pred             cccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                           ..-...+.++.+.|+ +||.+++...
T Consensus       237 -----~G~~~~~~~~~~~l~-~~G~iv~~G~  261 (347)
T PRK10309        237 -----AGVPQTVELAIEIAG-PRAQLALVGT  261 (347)
T ss_pred             -----CCCHHHHHHHHHHhh-cCCEEEEEcc
Confidence                 222468899999999 9999987654

>PTZ00357 methyltransferase; Provisional

Probab=94.72  E-value=0.065  Score=50.52  Aligned_cols=96  Identities=15%  Similarity=0.134  Sum_probs=57.0

Q ss_pred             eEEEEcCCcchhHHHHHhcC------CcEEEEcCCHHHHHHHH-cCCC-ceEE------ecCCccchhhhhhccCCC---
Q 024647           36 LAWDVGTGSGQAAASLSGIF------ENVIGTETSPKQIEFAT-KLPN-IRYE------LTSPAMSIAELEQNVAAQ---   98 (265)
Q Consensus        36 ~vlDvGcG~G~~~~~l~~~~------~~v~~vD~s~~~~~~a~-~~~~-~~~~------~~~~~~~~~d~~~~~~~~---   98 (265)
                      .|+-+|+|-|-+.....+..      -+|++||.++..+.... ++.+ -.+.      ...++++..|+..+..+.   
T Consensus       703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~  782 (1072)
T PTZ00357        703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG  782 (1072)
T ss_pred             EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence            58999999997777655432      26999999966433222 1111 1121      122455557877774321   


Q ss_pred             --------CceeEEEeccccccCC---hhHHHHHHHHHhcCC----CcE
Q 024647           99 --------STVDLVTIAQAMHWFD---LPQFYNQVKWVLKKP----NGV  132 (265)
Q Consensus        99 --------~~~Dlv~~~~~~~~~~---~~~~l~~~~~~Lk~p----gG~  132 (265)
                              +.+|+|++-..--.=|   -+..|.-+.+.|| +    +|+
T Consensus       783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLK-diqhsdGI  830 (1072)
T PTZ00357        783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLE-DIQLSRGI  830 (1072)
T ss_pred             cccccccccccceehHhhhcccccccCCHHHHHHHHHhhh-hhcccccc
Confidence                    3699999844222113   2467888888887 6    675

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=94.55  E-value=0.51  Score=40.99  Aligned_cols=96  Identities=15%  Similarity=0.163  Sum_probs=61.5

Q ss_pred             CCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647           33 NHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA  109 (265)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~  109 (265)
                      ++.+||-.|||. |..+..+++. +. ++++++.++...+.+++..--.+.....    .++..+....+.+|+++....
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~----~~~~~~~~~~~~vd~vld~~g  240 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLAR----DPLAAYAADKGDFDVVFEASG  240 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCc----hhhhhhhccCCCccEEEECCC
Confidence            567888889876 7777777765 44 6999999999888776543212222111    112222222345899986422


Q ss_pred             cccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          110 MHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       110 ~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                           ....++++.+.|+ ++|+++....
T Consensus       241 -----~~~~~~~~~~~L~-~~G~~v~~g~  263 (339)
T cd08232         241 -----APAALASALRVVR-PGGTVVQVGM  263 (339)
T ss_pred             -----CHHHHHHHHHHHh-cCCEEEEEec
Confidence                 2356888999999 9999987543

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>PLN02740 Alcohol dehydrogenase-like

Probab=94.54  E-value=0.54  Score=41.89  Aligned_cols=99  Identities=12%  Similarity=0.092  Sum_probs=63.4

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCCc--cchhhhhhccCCCCceeEEEe
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSPA--MSIAELEQNVAAQSTVDLVTI  106 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~--~~~~d~~~~~~~~~~~Dlv~~  106 (265)
                      .++++||-+|||. |..+..+++. +. +|+++|.++..++.++++.--.++.....  .....+..+. . +.+|+|+-
T Consensus       197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~-~-~g~dvvid  274 (381)
T PLN02740        197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMT-G-GGVDYSFE  274 (381)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHh-C-CCCCEEEE
Confidence            5678899999986 7777777765 45 59999999999999887532222221100  0001122221 2 26999986


Q ss_pred             ccccccCChhHHHHHHHHHhcCCC-cEEEEEec
Q 024647          107 AQAMHWFDLPQFYNQVKWVLKKPN-GVIATWCY  138 (265)
Q Consensus       107 ~~~~~~~~~~~~l~~~~~~Lk~pg-G~l~~~~~  138 (265)
                      ..     .....+..+.+.++ +| |++++...
T Consensus       275 ~~-----G~~~~~~~a~~~~~-~g~G~~v~~G~  301 (381)
T PLN02740        275 CA-----GNVEVLREAFLSTH-DGWGLTVLLGI  301 (381)
T ss_pred             CC-----CChHHHHHHHHhhh-cCCCEEEEEcc
Confidence            42     23467888888998 76 98877554

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=94.43  E-value=0.52  Score=42.53  Aligned_cols=90  Identities=16%  Similarity=0.047  Sum_probs=61.2

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHh-cCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647           32 TNHELAWDVGTGS-GQAAASLSG-IFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA  109 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~  109 (265)
                      .++++|+-+|||+ |......++ .+++|+.+|+++..++.|+.. +.....         .++. .  ..+|+|+... 
T Consensus       200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~-G~~~~~---------~~e~-v--~~aDVVI~at-  265 (413)
T cd00401         200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAME-GYEVMT---------MEEA-V--KEGDIFVTTT-  265 (413)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhc-CCEEcc---------HHHH-H--cCCCEEEECC-
Confidence            3678999999998 766665554 467999999999988888763 332221         1111 1  2479998753 


Q ss_pred             cccCChhHHHHH-HHHHhcCCCcEEEEEecCC
Q 024647          110 MHWFDLPQFYNQ-VKWVLKKPNGVIATWCYTV  140 (265)
Q Consensus       110 ~~~~~~~~~l~~-~~~~Lk~pgG~l~~~~~~~  140 (265)
                          .....+.. ..+.+| +||+++.....+
T Consensus       266 ----G~~~~i~~~~l~~mk-~GgilvnvG~~~  292 (413)
T cd00401         266 ----GNKDIITGEHFEQMK-DGAIVCNIGHFD  292 (413)
T ss_pred             ----CCHHHHHHHHHhcCC-CCcEEEEeCCCC
Confidence                23445655 489999 999998766543

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=94.38  E-value=0.39  Score=42.08  Aligned_cols=123  Identities=16%  Similarity=0.217  Sum_probs=71.9

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCC------cEEEEcCCHHHHHHHHc----CC--CceEEecCCccchhhh-hhc-cCC
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFE------NVIGTETSPKQIEFATK----LP--NIRYELTSPAMSIAEL-EQN-VAA   97 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~------~v~~vD~s~~~~~~a~~----~~--~~~~~~~~~~~~~~d~-~~~-~~~   97 (265)
                      .++.+|||+.+-+|.-|..|.+...      .|++=|.++.-+.....    .+  ++......+....... .+. +..
T Consensus       154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~  233 (375)
T KOG2198|consen  154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKE  233 (375)
T ss_pred             CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhh
Confidence            5788999999999999999887643      58999999987765442    22  2222221110000000 011 123


Q ss_pred             CCceeEEEecc-----ccc----------cC-C--------hhHHHHHHHHHhcCCCcEEEEEecCCCCC-C-hHHHHhh
Q 024647           98 QSTVDLVTIAQ-----AMH----------WF-D--------LPQFYNQVKWVLKKPNGVIATWCYTVPEV-N-VSVDAVF  151 (265)
Q Consensus        98 ~~~~Dlv~~~~-----~~~----------~~-~--------~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~-~-~~~~~~~  151 (265)
                      ...||-|+|.-     ..+          |. .        .-..+.+..++|| +||+++.++...... + .-+.+++
T Consensus       234 ~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk-~GG~lVYSTCSLnpieNEaVV~~~L  312 (375)
T KOG2198|consen  234 QLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLK-VGGRLVYSTCSLNPIENEAVVQEAL  312 (375)
T ss_pred             hhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhc-CCCEEEEeccCCCchhhHHHHHHHH
Confidence            34578777632     111          21 0        1257888999999 999999988763332 2 3334444


Q ss_pred             cccc
Q 024647          152 QPFY  155 (265)
Q Consensus       152 ~~~~  155 (265)
                      +...
T Consensus       313 ~~~~  316 (375)
T KOG2198|consen  313 QKVG  316 (375)
T ss_pred             HHhc
Confidence            4443

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=94.27  E-value=0.025  Score=47.66  Aligned_cols=48  Identities=8%  Similarity=0.100  Sum_probs=36.6

Q ss_pred             HHHHHHHhh-----CCCCCeEEEEcCCcchhHHHHHhcC-CcEEEEcCCHHHHH
Q 024647           22 ELFKFITSK-----TTNHELAWDVGTGSGQAAASLSGIF-ENVIGTETSPKQIE   69 (265)
Q Consensus        22 ~l~~~l~~~-----~~~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~   69 (265)
                      .++..+.+.     ...+++|||+|||+|.-.......+ ..+...|.|...++
T Consensus       100 dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~  153 (282)
T KOG2920|consen  100 DLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR  153 (282)
T ss_pred             HHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence            455555533     1356889999999999999888777 57888899888774

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=94.26  E-value=0.025  Score=40.70  Aligned_cols=35  Identities=20%  Similarity=0.612  Sum_probs=28.3

Q ss_pred             ceeEEEeccccccCC-------hhHHHHHHHHHhcCCCcEEEE
Q 024647          100 TVDLVTIAQAMHWFD-------LPQFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus       100 ~~Dlv~~~~~~~~~~-------~~~~l~~~~~~Lk~pgG~l~~  135 (265)
                      .||+|+|....-|+.       ...+++.+++.|+ |||.|++
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~-pGG~lil   42 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLR-PGGILIL   42 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEE
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhC-CCCEEEE
Confidence            489999998777763       2369999999999 9999998

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=94.24  E-value=0.57  Score=40.84  Aligned_cols=90  Identities=12%  Similarity=-0.028  Sum_probs=59.8

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA  109 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~  109 (265)
                      .++.+||-.|||. |..+..+++. +.+|++++.++.-++.++++..-....  .       .+.  ..+.+|+++....
T Consensus       164 ~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~--~-------~~~--~~~~~d~~i~~~~  232 (329)
T TIGR02822       164 PPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGG--A-------YDT--PPEPLDAAILFAP  232 (329)
T ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceecc--c-------ccc--CcccceEEEECCC
Confidence            5678899999864 6666666654 568999999999899888753211111  0       001  1235787664322


Q ss_pred             cccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          110 MHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       110 ~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                           ....+....+.|+ +||++++...
T Consensus       233 -----~~~~~~~~~~~l~-~~G~~v~~G~  255 (329)
T TIGR02822       233 -----AGGLVPPALEALD-RGGVLAVAGI  255 (329)
T ss_pred             -----cHHHHHHHHHhhC-CCcEEEEEec
Confidence                 1357889999999 9999987654

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=94.12  E-value=0.78  Score=40.16  Aligned_cols=100  Identities=21%  Similarity=0.219  Sum_probs=62.4

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      +++.+||-.|+|. |..+..+++. +. .++++|.+++..+.+++..-..............+..+ .....+|+++.. 
T Consensus       165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~-~~~~~~d~vld~-  242 (351)
T cd08285         165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKL-TGGKGVDAVIIA-  242 (351)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHH-hCCCCCcEEEEC-
Confidence            4567888888874 6677777765 44 48999999988888876432122221110000112222 234569999854 


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                          ......+.++.+.|+ ++|+++....
T Consensus       243 ----~g~~~~~~~~~~~l~-~~G~~v~~g~  267 (351)
T cd08285         243 ----GGGQDTFEQALKVLK-PGGTISNVNY  267 (351)
T ss_pred             ----CCCHHHHHHHHHHhh-cCCEEEEecc
Confidence                222467899999999 9999886543

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.12  E-value=0.39  Score=36.61  Aligned_cols=41  Identities=17%  Similarity=0.299  Sum_probs=35.8

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcC-CcEEEEcCCHHHHHHHHc
Q 024647           33 NHELAWDVGTGSGQAAASLSGIF-ENVIGTETSPKQIEFATK   73 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~   73 (265)
                      +..+.+|+|.|.|....+.++.+ ..-+|+|++|-.+..++-
T Consensus        72 ~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl  113 (199)
T KOG4058|consen   72 PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRL  113 (199)
T ss_pred             CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHH
Confidence            44678999999999999999988 468999999999988763

>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]

Probab=94.05  E-value=0.11  Score=46.88  Aligned_cols=114  Identities=11%  Similarity=-0.023  Sum_probs=66.9

Q ss_pred             CCCeEEEEcCCcchhHHHHHhc----CCcEEEEcCCHHHHHHHHcC--C----CceEEecCCccchhhhhhccCC-CCce
Q 024647           33 NHELAWDVGTGSGQAAASLSGI----FENVIGTETSPKQIEFATKL--P----NIRYELTSPAMSIAELEQNVAA-QSTV  101 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~--~----~~~~~~~~~~~~~~d~~~~~~~-~~~~  101 (265)
                      .++.+.|+|.|.|.-...+...    ...+..||.|..|.......  .    +-.++.. ..+.  + ..+|.+ ...|
T Consensus       200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~-~~~~--r-~~~pi~~~~~y  275 (491)
T KOG2539|consen  200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRK-LVFH--R-QRLPIDIKNGY  275 (491)
T ss_pred             ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccc-cchh--c-ccCCCCcccce
Confidence            3567889998877655554432    24599999999999877641  1    0011110 0000  0 223333 3459


Q ss_pred             eEEEeccccccC-Chh---H-HHHHHHHHhcCCCcEEEEEecCCCCCChHHHHhh
Q 024647          102 DLVTIAQAMHWF-DLP---Q-FYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVF  151 (265)
Q Consensus       102 Dlv~~~~~~~~~-~~~---~-~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~  151 (265)
                      |+|++++.+|.+ ...   . .-..+.+..+ +|+.+++...+.+.-...+.++.
T Consensus       276 Dlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r-~g~~lViIe~g~~~g~e~l~eaR  329 (491)
T KOG2539|consen  276 DLVICAHKLHELGSKFSRLDVPESLWRKTDR-SGYFLVIIEKGTTMGLELLTEAR  329 (491)
T ss_pred             eeEEeeeeeeccCCchhhhhhhHHHHHhccC-CCceEEEEecCCccchhhHHHHH
Confidence            999999999987 433   2 2334566678 89998876665443334444333

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=94.00  E-value=0.79  Score=39.89  Aligned_cols=99  Identities=17%  Similarity=0.254  Sum_probs=60.7

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhcCC--cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGIFE--NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      +++.+||..|+|. |..+..+++...  .+++++.++...+.+++.....+....-......+... .+.+.+|+++...
T Consensus       166 ~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~-~~~~~~d~vld~~  244 (347)
T cd05278         166 KPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKNGDIVEQILEL-TGGRGVDCVIEAV  244 (347)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHH-cCCCCCcEEEEcc
Confidence            4567788888763 777777776543  68899888888877765432222221110000112222 2345799998642


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                           .....+.++.+.|+ ++|+++...
T Consensus       245 -----g~~~~~~~~~~~l~-~~G~~v~~g  267 (347)
T cd05278         245 -----GFEETFEQAVKVVR-PGGTIANVG  267 (347)
T ss_pred             -----CCHHHHHHHHHHhh-cCCEEEEEc
Confidence                 22358889999999 999988654

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=93.92  E-value=0.32  Score=44.96  Aligned_cols=116  Identities=19%  Similarity=0.266  Sum_probs=73.3

Q ss_pred             cHHHHHHHHhhCC--CCCeEEEEcCCcchhHHHHHhcC------CcEEEEcCCHHHHHHHHc---CCCceEEecCCccch
Q 024647           20 PEELFKFITSKTT--NHELAWDVGTGSGQAAASLSGIF------ENVIGTETSPKQIEFATK---LPNIRYELTSPAMSI   88 (265)
Q Consensus        20 ~~~l~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~~------~~v~~vD~s~~~~~~a~~---~~~~~~~~~~~~~~~   88 (265)
                      |.++.+.+.....  +..+|.|-.||+|.+.....+..      ..+.|.|+++.....++-   +-++..   +..+..
T Consensus       171 P~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~---~~~i~~  247 (489)
T COG0286         171 PREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG---DANIRH  247 (489)
T ss_pred             hHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc---cccccc
Confidence            5566666655543  55689999999997777665432      348999999999998874   123322   111111


Q ss_pred             hhh-hhc----cCCCCceeEEEeccccc---cC-C---------------------h-hHHHHHHHHHhcCCCcEEEEEe
Q 024647           89 AEL-EQN----VAAQSTVDLVTIAQAMH---WF-D---------------------L-PQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        89 ~d~-~~~----~~~~~~~Dlv~~~~~~~---~~-~---------------------~-~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      +|- ...    ....+.||.|+++..+.   |- +                     . ..+++.+...|+ |||+.+++.
T Consensus       248 ~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~-~~g~aaivl  326 (489)
T COG0286         248 GDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLK-PGGRAAIVL  326 (489)
T ss_pred             cccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcC-CCceEEEEe
Confidence            221 111    11336799999876442   32 1                     0 368999999999 999777766


Q ss_pred             cC
Q 024647          138 YT  139 (265)
Q Consensus       138 ~~  139 (265)
                      +.
T Consensus       327 ~~  328 (489)
T COG0286         327 PD  328 (489)
T ss_pred             cC
Confidence            64

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=93.91  E-value=0.85  Score=39.99  Aligned_cols=99  Identities=14%  Similarity=0.156  Sum_probs=61.1

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhh----hhccCCCCcee---
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAEL----EQNVAAQSTVD---  102 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~----~~~~~~~~~~D---  102 (265)
                      .++.+||-.|||+ |..+..+++. +.+|+++|.++..++.++++. +.......+....++    .++ .....+|   
T Consensus       165 ~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~G-a~~~i~~~~~~~~~~~~~~~~~-t~~~g~d~~~  242 (349)
T TIGR03201       165 KKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFG-ADLTLNPKDKSAREVKKLIKAF-AKARGLRSTG  242 (349)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhC-CceEecCccccHHHHHHHHHhh-cccCCCCCCc
Confidence            4678899999976 7777777765 568999999999999887643 222111110000111    112 1222354   


Q ss_pred             -EEEeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          103 -LVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       103 -lv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                       +|+-.     ......++.+.++|+ +||++++...
T Consensus       243 d~v~d~-----~g~~~~~~~~~~~l~-~~G~iv~~G~  273 (349)
T TIGR03201       243 WKIFEC-----SGSKPGQESALSLLS-HGGTLVVVGY  273 (349)
T ss_pred             CEEEEC-----CCChHHHHHHHHHHh-cCCeEEEECc
Confidence             55532     223467888899999 9999987654

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=93.84  E-value=1.8  Score=36.10  Aligned_cols=114  Identities=13%  Similarity=0.193  Sum_probs=70.9

Q ss_pred             CCeEEEEcCCcchhHHHHHhcCC------cEEEEcCCHHHHHHH-H----cCCCceEEecCCccchhhhhhc-c-CCCCc
Q 024647           34 HELAWDVGTGSGQAAASLSGIFE------NVIGTETSPKQIEFA-T----KLPNIRYELTSPAMSIAELEQN-V-AAQST  100 (265)
Q Consensus        34 ~~~vlDvGcG~G~~~~~l~~~~~------~v~~vD~s~~~~~~a-~----~~~~~~~~~~~~~~~~~d~~~~-~-~~~~~  100 (265)
                      +...+|+|+|+-.-|+.|.+.++      +++.+|+|...++.. +    +++.+.....-     +|.+.. . ++..+
T Consensus        79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~-----~~~~~~La~~~~~~  153 (321)
T COG4301          79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALC-----GDYELALAELPRGG  153 (321)
T ss_pred             cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehh-----hhHHHHHhcccCCC
Confidence            56789999999999988876543      599999999998743 2    35665554321     443321 1 12222


Q ss_pred             eeE-EEeccccccCCh---hHHHHHHHHHhcCCCcEEEE-EecCCCCCChHHHHhhcccc
Q 024647          101 VDL-VTIAQAMHWFDL---PQFYNQVKWVLKKPNGVIAT-WCYTVPEVNVSVDAVFQPFY  155 (265)
Q Consensus       101 ~Dl-v~~~~~~~~~~~---~~~l~~~~~~Lk~pgG~l~~-~~~~~~~~~~~~~~~~~~~~  155 (265)
                      --+ ++...++-.+.|   ..++.++..+|+ ||-.+.+ .+...+  ...++.+|.+-.
T Consensus       154 ~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~-pGd~~LlGvDl~k~--Ae~Le~AYdDp~  210 (321)
T COG4301         154 RRLFVFLGSTLGNLTPGECAVFLTQLRGALR-PGDYFLLGVDLRKP--AERLEAAYDDPQ  210 (321)
T ss_pred             eEEEEEecccccCCChHHHHHHHHHHHhcCC-CcceEEEeccccCH--HHHHHHhhcCcc
Confidence            233 334446666643   468999999999 9988776 333322  244555555433

>PLN02827 Alcohol dehydrogenase-like

Probab=93.73  E-value=0.83  Score=40.67  Aligned_cols=100  Identities=12%  Similarity=0.074  Sum_probs=62.2

Q ss_pred             CCCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCC--ccchhhhhhccCCCCceeEEE
Q 024647           31 TTNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSP--AMSIAELEQNVAAQSTVDLVT  105 (265)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~Dlv~  105 (265)
                      ..++++||-.|+|+ |.++..+++. +. .|+++|.++...+.++++.--.++...-  ......+..+. . +.+|+|+
T Consensus       191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~-~-~g~d~vi  268 (378)
T PLN02827        191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMT-G-GGADYSF  268 (378)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHh-C-CCCCEEE
Confidence            35678899999876 7777777764 44 4889999999988887653212221110  00001122221 2 2689988


Q ss_pred             eccccccCChhHHHHHHHHHhcCCC-cEEEEEec
Q 024647          106 IAQAMHWFDLPQFYNQVKWVLKKPN-GVIATWCY  138 (265)
Q Consensus       106 ~~~~~~~~~~~~~l~~~~~~Lk~pg-G~l~~~~~  138 (265)
                      -..     .....+..+.++|+ +| |++++...
T Consensus       269 d~~-----G~~~~~~~~l~~l~-~g~G~iv~~G~  296 (378)
T PLN02827        269 ECV-----GDTGIATTALQSCS-DGWGLTVTLGV  296 (378)
T ss_pred             ECC-----CChHHHHHHHHhhc-cCCCEEEEECC
Confidence            642     23457888899999 88 99987543

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=93.65  E-value=1.1  Score=38.97  Aligned_cols=101  Identities=18%  Similarity=0.144  Sum_probs=63.5

Q ss_pred             CCCCCeEEEEcCCc-chhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           31 TTNHELAWDVGTGS-GQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      ..++.+||-.|+|. |..+..+++. +.+++++..+++..+.++++.........-......+... .+...+|+++...
T Consensus       157 l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~-~~~~~vd~vld~~  235 (337)
T cd08261         157 VTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGADDTINVGDEDVAARLREL-TDGEGADVVIDAT  235 (337)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCCCEEecCcccCHHHHHHHH-hCCCCCCEEEECC
Confidence            35667888888874 6777777765 5689999889988887765432222221110011222222 2445689998642


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                           .....+.++.+.|+ ++|.++....
T Consensus       236 -----g~~~~~~~~~~~l~-~~G~~i~~g~  259 (337)
T cd08261         236 -----GNPASMEEAVELVA-HGGRVVLVGL  259 (337)
T ss_pred             -----CCHHHHHHHHHHHh-cCCEEEEEcC
Confidence                 12457888999999 9999886543

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=93.61  E-value=1.3  Score=38.96  Aligned_cols=98  Identities=16%  Similarity=0.119  Sum_probs=62.5

Q ss_pred             CCCCeEEEEcC-C-cchhHHHHHhc-CCcEEEEcCCHHHHHHHH-cCCCceEEecCCc-cchhhhhhccCCCCceeEEEe
Q 024647           32 TNHELAWDVGT-G-SGQAAASLSGI-FENVIGTETSPKQIEFAT-KLPNIRYELTSPA-MSIAELEQNVAAQSTVDLVTI  106 (265)
Q Consensus        32 ~~~~~vlDvGc-G-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~-~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~Dlv~~  106 (265)
                      .++++||-.|+ | .|.++..+++. +.+|++++.++...+.++ ++.--..+...-. .....+...  ..+.+|+|+-
T Consensus       157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~--~~~gvD~v~d  234 (348)
T PLN03154        157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRY--FPEGIDIYFD  234 (348)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHH--CCCCcEEEEE
Confidence            56788999998 4 47888888765 568999999998888776 3322122221100 011112222  1246899986


Q ss_pred             ccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          107 AQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       107 ~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      ...      ...+..+.+.|+ ++|++++...
T Consensus       235 ~vG------~~~~~~~~~~l~-~~G~iv~~G~  259 (348)
T PLN03154        235 NVG------GDMLDAALLNMK-IHGRIAVCGM  259 (348)
T ss_pred             CCC------HHHHHHHHHHhc-cCCEEEEECc
Confidence            422      247888999999 9999987553

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=93.57  E-value=1  Score=40.42  Aligned_cols=104  Identities=19%  Similarity=0.117  Sum_probs=64.0

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CCc-EEEEcCCHHHHHHHHcCCCceEEecCC-ccchhhhhhccCCCCceeEEEec
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FEN-VIGTETSPKQIEFATKLPNIRYELTSP-AMSIAELEQNVAAQSTVDLVTIA  107 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~Dlv~~~  107 (265)
                      .++++||-.|+|+ |..+..+++. +.+ ++.+|.++.-++.++++. +....... ......+..+ .....+|+++-.
T Consensus       184 ~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~G-a~~v~~~~~~~~~~~v~~~-~~~~g~Dvvid~  261 (393)
T TIGR02819       184 GPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFG-CETVDLSKDATLPEQIEQI-LGEPEVDCAVDC  261 (393)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcC-CeEEecCCcccHHHHHHHH-cCCCCCcEEEEC
Confidence            4567777788876 7777777765 445 667799998888888753 33222110 0001122222 233468999865


Q ss_pred             ccccc---------CChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          108 QAMHW---------FDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       108 ~~~~~---------~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      ..-..         .+....++++.++++ +||++++...
T Consensus       262 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~i~~~G~  300 (393)
T TIGR02819       262 VGFEARGHGHDGKKEAPATVLNSLMEVTR-VGGAIGIPGL  300 (393)
T ss_pred             CCCccccccccccccchHHHHHHHHHHhh-CCCEEEEeee
Confidence            43211         022358999999999 9999988655

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=93.40  E-value=0.91  Score=40.10  Aligned_cols=95  Identities=17%  Similarity=0.134  Sum_probs=57.7

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CCcEEEEcCCHHHHH-HHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FENVIGTETSPKQIE-FATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~-~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      .++++||-.|||. |.++..+++. +.++++++.++.... .++++ ++......-.  ..++....   +.+|+|+-..
T Consensus       182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~-Ga~~vi~~~~--~~~~~~~~---~~~D~vid~~  255 (360)
T PLN02586        182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRL-GADSFLVSTD--PEKMKAAI---GTMDYIIDTV  255 (360)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhC-CCcEEEcCCC--HHHHHhhc---CCCCEEEECC
Confidence            4567888899986 7777777765 567888887766543 33443 2222211100  01222221   2488888542


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      .     ....+.++.+.|+ +||+++....
T Consensus       256 g-----~~~~~~~~~~~l~-~~G~iv~vG~  279 (360)
T PLN02586        256 S-----AVHALGPLLGLLK-VNGKLITLGL  279 (360)
T ss_pred             C-----CHHHHHHHHHHhc-CCcEEEEeCC
Confidence            2     2357888999999 9999987654

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=93.12  E-value=1.4  Score=39.02  Aligned_cols=99  Identities=14%  Similarity=0.064  Sum_probs=62.6

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCCc--cchhhhhhccCCCCceeEEEe
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSPA--MSIAELEQNVAAQSTVDLVTI  106 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~--~~~~d~~~~~~~~~~~Dlv~~  106 (265)
                      .++++||-.|+|. |.++..+++. +. +|+++|.++..++.++++.....+...-.  .....+..+  ..+.+|+|+-
T Consensus       185 ~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~--~~~g~d~vid  262 (368)
T cd08300         185 EPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEM--TDGGVDYTFE  262 (368)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHH--hCCCCcEEEE
Confidence            5678888889875 6777777764 55 69999999999998876532222221100  001112222  1236899986


Q ss_pred             ccccccCChhHHHHHHHHHhcCCC-cEEEEEec
Q 024647          107 AQAMHWFDLPQFYNQVKWVLKKPN-GVIATWCY  138 (265)
Q Consensus       107 ~~~~~~~~~~~~l~~~~~~Lk~pg-G~l~~~~~  138 (265)
                      .     ......+.++.+.|+ ++ |+++....
T Consensus       263 ~-----~g~~~~~~~a~~~l~-~~~G~~v~~g~  289 (368)
T cd08300         263 C-----IGNVKVMRAALEACH-KGWGTSVIIGV  289 (368)
T ss_pred             C-----CCChHHHHHHHHhhc-cCCCeEEEEcc
Confidence            4     222457888899998 77 99887554

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=93.10  E-value=0.18  Score=47.01  Aligned_cols=112  Identities=15%  Similarity=0.219  Sum_probs=67.2

Q ss_pred             CCCCcHHHHHHHHhh--CCCCCeEEEEcCCcchhHHHHHhcCC---cEEEEcCCHHHHHHHHcCCCceEEecCCccchhh
Q 024647           16 RPNYPEELFKFITSK--TTNHELAWDVGTGSGQAAASLSGIFE---NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAE   90 (265)
Q Consensus        16 rp~y~~~l~~~l~~~--~~~~~~vlDvGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d   90 (265)
                      |..|  +|+++=..+  +.+...|||+||-+|...+-.++..+   -|+|||+-|-     +..+|+...+.+++   .+
T Consensus        27 RsaF--KLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi-----kp~~~c~t~v~dIt---td   96 (780)
T KOG1098|consen   27 RSAF--KLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI-----KPIPNCDTLVEDIT---TD   96 (780)
T ss_pred             HHHH--HHHHHHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec-----ccCCccchhhhhhh---HH
Confidence            4444  555554444  35677899999999999988887654   4999999775     33345444332221   11


Q ss_pred             -----hhhccCCCCceeEEEecc----ccccC-Chh-------HHHHHHHHHhcCCCcEEEEEecC
Q 024647           91 -----LEQNVAAQSTVDLVTIAQ----AMHWF-DLP-------QFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        91 -----~~~~~~~~~~~Dlv~~~~----~~~~~-~~~-------~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                           +... +..-+.|+|+...    ...|. |..       ..++-+..-|+ -||+++.-.+.
T Consensus        97 ~cr~~l~k~-l~t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~-~~g~fvtkvfr  160 (780)
T KOG1098|consen   97 ECRSKLRKI-LKTWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLA-KGGTFVTKVFR  160 (780)
T ss_pred             HHHHHHHHH-HHhCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHH-hcCcccccccc
Confidence                 1111 1233468888654    33455 321       35666777888 79997764443

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=93.08  E-value=0.14  Score=41.56  Aligned_cols=59  Identities=22%  Similarity=0.254  Sum_probs=37.1

Q ss_pred             hCCCCcHHHHHHHHh----hCC--CCCeEEEEcCCcchhHHHHH----hcCCcEEEEcCCHHHHHHHHc
Q 024647           15 TRPNYPEELFKFITS----KTT--NHELAWDVGTGSGQAAASLS----GIFENVIGTETSPKQIEFATK   73 (265)
Q Consensus        15 ~rp~y~~~l~~~l~~----~~~--~~~~vlDvGcG~G~~~~~l~----~~~~~v~~vD~s~~~~~~a~~   73 (265)
                      ..|.||-.+..-|.+    +.+  .+-++.|-.||.|.+.--+.    .....|+|.|+++++++.|++
T Consensus        27 G~p~FPVRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~k   95 (246)
T PF11599_consen   27 GFPAFPVRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARK   95 (246)
T ss_dssp             TB----HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHH
T ss_pred             CCCCccHHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHH
Confidence            556777666555443    332  34679999999997766543    234579999999999999875

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=92.91  E-value=1.2  Score=32.33  Aligned_cols=89  Identities=17%  Similarity=0.141  Sum_probs=55.2

Q ss_pred             CCCeEEEEcCCcc-hhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccC-CCCceeEEEecccc
Q 024647           33 NHELAWDVGTGSG-QAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVA-AQSTVDLVTIAQAM  110 (265)
Q Consensus        33 ~~~~vlDvGcG~G-~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~Dlv~~~~~~  110 (265)
                      ...+|+|+|-|-= ..+..|++++.+++++|+++.   .++  .++++..       .|+.+-.. --...|+|.+--  
T Consensus        13 ~~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~---~a~--~g~~~v~-------DDitnP~~~iY~~A~lIYSiR--   78 (129)
T COG1255          13 ARGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK---TAP--EGLRFVV-------DDITNPNISIYEGADLIYSIR--   78 (129)
T ss_pred             cCCcEEEEccchHHHHHHHHHHcCCcEEEEecccc---cCc--ccceEEE-------ccCCCccHHHhhCccceeecC--
Confidence            3358999999863 566778889999999999998   444  5677777       34322110 013468887731  


Q ss_pred             ccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          111 HWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       111 ~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                         .++...+.+.++-++-|-.+++...
T Consensus        79 ---pppEl~~~ildva~aVga~l~I~pL  103 (129)
T COG1255          79 ---PPPELQSAILDVAKAVGAPLYIKPL  103 (129)
T ss_pred             ---CCHHHHHHHHHHHHhhCCCEEEEec
Confidence               4555555555555533444555443

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=92.82  E-value=1.3  Score=38.23  Aligned_cols=101  Identities=12%  Similarity=0.029  Sum_probs=61.6

Q ss_pred             CeEEEEcCCc--chhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhh-hccCCCCceeEEEeccccc
Q 024647           35 ELAWDVGTGS--GQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELE-QNVAAQSTVDLVTIAQAMH  111 (265)
Q Consensus        35 ~~vlDvGcG~--G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~Dlv~~~~~~~  111 (265)
                      ++|+=+|||.  |.++..|++.+.+|+.++.+.+.++..++..++..... .....-... ..+.+.+++|+|+...=- 
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~-g~~~~~~~~~~~~~~~~~~D~viv~vK~-   80 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQ-GQASLYAIPAETADAAEPIHRLLLACKA-   80 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeC-CcceeeccCCCCcccccccCEEEEECCH-
Confidence            5789999996  56777788888899999998776666653223332211 100000000 011123579999876411 


Q ss_pred             cCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          112 WFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       112 ~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                       .+...+++.+...+. ++..++..-.+
T Consensus        81 -~~~~~al~~l~~~l~-~~t~vv~lQNG  106 (305)
T PRK05708         81 -YDAEPAVASLAHRLA-PGAELLLLQNG  106 (305)
T ss_pred             -HhHHHHHHHHHhhCC-CCCEEEEEeCC
Confidence             245678888999999 88877655443

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=92.76  E-value=2.6  Score=36.59  Aligned_cols=98  Identities=18%  Similarity=0.159  Sum_probs=61.9

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CCc-EEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FEN-VIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      .++.+||-.|+|. |..+..+++. +.+ +++++.++...+.++...........-.. ...+... .....+|+++.. 
T Consensus       158 ~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~~~-~~~~~~~-~~~~~~d~vld~-  234 (343)
T cd08236         158 TLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKEED-VEKVREL-TEGRGADLVIEA-  234 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEecCcccc-HHHHHHH-hCCCCCCEEEEC-
Confidence            4567888888765 6666667664 455 99999998888877653221222211100 1223223 233459999864 


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                          ......+..+.+.|+ ++|+++...
T Consensus       235 ----~g~~~~~~~~~~~l~-~~G~~v~~g  258 (343)
T cd08236         235 ----AGSPATIEQALALAR-PGGKVVLVG  258 (343)
T ss_pred             ----CCCHHHHHHHHHHhh-cCCEEEEEc
Confidence                233467889999999 999988754

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=92.66  E-value=0.2  Score=43.48  Aligned_cols=108  Identities=14%  Similarity=0.157  Sum_probs=70.4

Q ss_pred             CCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCC---CceEEec-----CCccchhhhhhccC-CCCce
Q 024647           31 TTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLP---NIRYELT-----SPAMSIAELEQNVA-AQSTV  101 (265)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~---~~~~~~~-----~~~~~~~d~~~~~~-~~~~~  101 (265)
                      ..+++.|.|==.|||.+....+..++-|+|.||+-.|+...+...   ..+|.+-     ...+..+|...-++ ....|
T Consensus       206 v~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~f  285 (421)
T KOG2671|consen  206 VKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKF  285 (421)
T ss_pred             cCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhccee
Confidence            368899999999999999999999999999999999988554310   0111110     01111244443332 23468


Q ss_pred             eEEEeccc-------------------------cccCC---------hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          102 DLVTIAQA-------------------------MHWFD---------LPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       102 Dlv~~~~~-------------------------~~~~~---------~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      |.|+|.-.                         -|+..         ....+.-..+.|. -||++++|.+.
T Consensus       286 DaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~-~ggrlv~w~p~  356 (421)
T KOG2671|consen  286 DAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLV-DGGRLVFWLPT  356 (421)
T ss_pred             eEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhh-cCceEEEecCc
Confidence            99998431                         12110         1246677789999 89999998874

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=92.65  E-value=1.1  Score=40.26  Aligned_cols=98  Identities=18%  Similarity=0.216  Sum_probs=60.9

Q ss_pred             CCCCeEEEEc-CCc-chhHHHHHhcC---C-cEEEEcCCHHHHHHHHcC-C------Cce--EEecCC-ccchhhhhhcc
Q 024647           32 TNHELAWDVG-TGS-GQAAASLSGIF---E-NVIGTETSPKQIEFATKL-P------NIR--YELTSP-AMSIAELEQNV   95 (265)
Q Consensus        32 ~~~~~vlDvG-cG~-G~~~~~l~~~~---~-~v~~vD~s~~~~~~a~~~-~------~~~--~~~~~~-~~~~~d~~~~~   95 (265)
                      .++.+||-+| +|. |..+..+++..   + +|+++|.++..++.+++. .      +..  .....- ......+..+ 
T Consensus       174 ~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~-  252 (410)
T cd08238         174 KPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMEL-  252 (410)
T ss_pred             CCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHH-
Confidence            4567888887 564 88888888763   2 699999999999988763 1      222  121100 0000112222 


Q ss_pred             CCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEE
Q 024647           96 AAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATW  136 (265)
Q Consensus        96 ~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~  136 (265)
                      .....+|+|+...     .....+..+.+.|+ ++|.+++.
T Consensus       253 t~g~g~D~vid~~-----g~~~~~~~a~~~l~-~~G~~v~~  287 (410)
T cd08238         253 TGGQGFDDVFVFV-----PVPELVEEADTLLA-PDGCLNFF  287 (410)
T ss_pred             hCCCCCCEEEEcC-----CCHHHHHHHHHHhc-cCCeEEEE
Confidence            1334689888642     22468888999999 88877654

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=92.63  E-value=1.5  Score=38.80  Aligned_cols=99  Identities=12%  Similarity=0.050  Sum_probs=62.3

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecC--CccchhhhhhccCCCCceeEEEe
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTS--PAMSIAELEQNVAAQSTVDLVTI  106 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~Dlv~~  106 (265)
                      .++++||-.|||. |..+..+++. +. +|+++|.++..++.++++.-.......  .......+..+. . +.+|+|+-
T Consensus       184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~-~-~g~d~vid  261 (368)
T TIGR02818       184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEIT-D-GGVDYSFE  261 (368)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHh-C-CCCCEEEE
Confidence            5678899899976 7777777765 45 699999999999988764321112111  000001122221 2 36898886


Q ss_pred             ccccccCChhHHHHHHHHHhcCCC-cEEEEEec
Q 024647          107 AQAMHWFDLPQFYNQVKWVLKKPN-GVIATWCY  138 (265)
Q Consensus       107 ~~~~~~~~~~~~l~~~~~~Lk~pg-G~l~~~~~  138 (265)
                      .     ..-...+.++.+.++ ++ |++++...
T Consensus       262 ~-----~G~~~~~~~~~~~~~-~~~G~~v~~g~  288 (368)
T TIGR02818       262 C-----IGNVNVMRAALECCH-KGWGESIIIGV  288 (368)
T ss_pred             C-----CCCHHHHHHHHHHhh-cCCCeEEEEec
Confidence            4     222457888899998 76 99887654

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=92.61  E-value=1.6  Score=38.84  Aligned_cols=94  Identities=16%  Similarity=0.116  Sum_probs=58.1

Q ss_pred             CCCeEEEEcCCc-chhHHHHHhc-CCcEEEEcCCHHH-HHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647           33 NHELAWDVGTGS-GQAAASLSGI-FENVIGTETSPKQ-IEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA  109 (265)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~-~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~  109 (265)
                      ++++||-.|||. |..+..+++. +.+|++++.+++. .+.++++ ++......-.  ...+....   +.+|+|+-.. 
T Consensus       178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~l-Ga~~~i~~~~--~~~v~~~~---~~~D~vid~~-  250 (375)
T PLN02178        178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRL-GADSFLVTTD--SQKMKEAV---GTMDFIIDTV-  250 (375)
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhC-CCcEEEcCcC--HHHHHHhh---CCCcEEEECC-
Confidence            567888889875 7777777765 5689999887654 4555543 2222211100  01122221   2489888642 


Q ss_pred             cccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          110 MHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       110 ~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                          .....+..+.+.|+ ++|+++....
T Consensus       251 ----G~~~~~~~~~~~l~-~~G~iv~vG~  274 (375)
T PLN02178        251 ----SAEHALLPLFSLLK-VSGKLVALGL  274 (375)
T ss_pred             ----CcHHHHHHHHHhhc-CCCEEEEEcc
Confidence                23457888899999 9999987654

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=92.57  E-value=2  Score=37.62  Aligned_cols=99  Identities=18%  Similarity=0.168  Sum_probs=60.6

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEec-CCccchhhhhhccCCCCceeEEEec
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELT-SPAMSIAELEQNVAAQSTVDLVTIA  107 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~Dlv~~~  107 (265)
                      .++.+||-.|+|. |..+..+++. +. +|++++.++...+.+++.. +..... .-......+.+. ...+.+|+|+-.
T Consensus       171 ~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~g-a~~~i~~~~~~~~~~l~~~-~~~~~~d~vid~  248 (351)
T cd08233         171 KPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELG-ATIVLDPTEVDVVAEVRKL-TGGGGVDVSFDC  248 (351)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhC-CCEEECCCccCHHHHHHHH-hCCCCCCEEEEC
Confidence            4567788888754 5666666654 45 6999999999888876542 222211 110011122222 233459999864


Q ss_pred             cccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      .     .....+..+.+.|+ ++|.++....
T Consensus       249 ~-----g~~~~~~~~~~~l~-~~G~~v~~g~  273 (351)
T cd08233         249 A-----GVQATLDTAIDALR-PRGTAVNVAI  273 (351)
T ss_pred             C-----CCHHHHHHHHHhcc-CCCEEEEEcc
Confidence            2     22457888899999 9999887554

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=92.35  E-value=0.37  Score=42.40  Aligned_cols=41  Identities=29%  Similarity=0.319  Sum_probs=34.0

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcC-CcEEEEcCCHHHHHHHHc
Q 024647           33 NHELAWDVGTGSGQAAASLSGIF-ENVIGTETSPKQIEFATK   73 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~   73 (265)
                      +-+.|+|+|.|.|.+++.++=.+ -.|.+||-|....+.|++
T Consensus       153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence            34669999999999999998554 579999999888777664

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=92.27  E-value=2.2  Score=35.45  Aligned_cols=99  Identities=14%  Similarity=0.148  Sum_probs=49.4

Q ss_pred             CCCeEEEEcCCcc-hhHHHHHhcCCcEEEEcCCHHHHHHHHcC-----CCceEEecCCccchhhhhh-ccC-CCCceeEE
Q 024647           33 NHELAWDVGTGSG-QAAASLSGIFENVIGTETSPKQIEFATKL-----PNIRYELTSPAMSIAELEQ-NVA-AQSTVDLV  104 (265)
Q Consensus        33 ~~~~vlDvGcG~G-~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~d~~~-~~~-~~~~~Dlv  104 (265)
                      .+++||-+|=.-- .++..+.....+|+.+|+++.+++..++.     -+++...       .|+.+ +|. -.+.||++
T Consensus        44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~-------~DlR~~LP~~~~~~fD~f  116 (243)
T PF01861_consen   44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVH-------YDLRDPLPEELRGKFDVF  116 (243)
T ss_dssp             TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE----------TTS---TTTSS-BSEE
T ss_pred             cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEE-------ecccccCCHHHhcCCCEE
Confidence            5688999985542 22333333445899999999999976541     2355555       45433 221 23789999


Q ss_pred             EeccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          105 TIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       105 ~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +..-..---...-++.+....|| ..|......+.
T Consensus       117 ~TDPPyT~~G~~LFlsRgi~~Lk-~~g~~gy~~~~  150 (243)
T PF01861_consen  117 FTDPPYTPEGLKLFLSRGIEALK-GEGCAGYFGFT  150 (243)
T ss_dssp             EE---SSHHHHHHHHHHHHHTB--STT-EEEEEE-
T ss_pred             EeCCCCCHHHHHHHHHHHHHHhC-CCCceEEEEEe
Confidence            98532111122368999999999 55533443443

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=92.23  E-value=3  Score=36.28  Aligned_cols=100  Identities=15%  Similarity=0.203  Sum_probs=62.2

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CCc-EEEEcCCHHHHHHHHcCCCceEEecCCccc---hhhhhhccCCCCceeEEE
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FEN-VIGTETSPKQIEFATKLPNIRYELTSPAMS---IAELEQNVAAQSTVDLVT  105 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~---~~d~~~~~~~~~~~Dlv~  105 (265)
                      .++.+||-.|+|. |..+..+++. +.+ |++++.++...+.+++.....+....-...   ...+... .....+|+|+
T Consensus       161 ~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~-~~~~~~d~vl  239 (343)
T cd05285         161 RPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAEL-LGGKGPDVVI  239 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEeccccccchhHHHHHHHH-hCCCCCCEEE
Confidence            5667777788775 6777777765 456 899999988888776542212222111000   0122222 2445699998


Q ss_pred             eccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          106 IAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       106 ~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      -...     ....++.+.+.|+ ++|.++....
T Consensus       240 d~~g-----~~~~~~~~~~~l~-~~G~~v~~g~  266 (343)
T cd05285         240 ECTG-----AESCIQTAIYATR-PGGTVVLVGM  266 (343)
T ss_pred             ECCC-----CHHHHHHHHHHhh-cCCEEEEEcc
Confidence            6422     2347889999999 9999886554

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=92.03  E-value=2.3  Score=37.59  Aligned_cols=99  Identities=19%  Similarity=0.159  Sum_probs=61.9

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      .++++||-.|+|. |..+..+++. +. .++++|.++...+.+++..-..+...........+....  ...+|+|+-. 
T Consensus       185 ~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~i~~~~~~~~~~v~~~~--~~~~d~vld~-  261 (365)
T cd08278         185 RPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVINPKEEDLVAAIREIT--GGGVDYALDT-  261 (365)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHh--CCCCcEEEEC-
Confidence            4567888888765 6666667664 45 499999999988887764322222211100111222222  3468999854 


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                          ......+..+.+.|+ ++|.++....
T Consensus       262 ----~g~~~~~~~~~~~l~-~~G~~v~~g~  286 (365)
T cd08278         262 ----TGVPAVIEQAVDALA-PRGTLALVGA  286 (365)
T ss_pred             ----CCCcHHHHHHHHHhc-cCCEEEEeCc
Confidence                222457889999999 8999887553

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=91.94  E-value=2.2  Score=37.62  Aligned_cols=99  Identities=16%  Similarity=0.080  Sum_probs=62.0

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCC--ccchhhhhhccCCCCceeEEEe
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSP--AMSIAELEQNVAAQSTVDLVTI  106 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~Dlv~~  106 (265)
                      .++++||-.|+|. |.++..+++. +. +|+++|.+++.++.++++....+.....  .-....+..+  ..+.+|+++-
T Consensus       186 ~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~--~~~~~d~vid  263 (369)
T cd08301         186 KKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEM--TGGGVDYSFE  263 (369)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcccccchhHHHHHHHH--hCCCCCEEEE
Confidence            5678888889875 6666677765 44 6999999999999888753222222110  0000112222  2236888885


Q ss_pred             ccccccCChhHHHHHHHHHhcCCC-cEEEEEec
Q 024647          107 AQAMHWFDLPQFYNQVKWVLKKPN-GVIATWCY  138 (265)
Q Consensus       107 ~~~~~~~~~~~~l~~~~~~Lk~pg-G~l~~~~~  138 (265)
                      .     ......+..+.+.++ +| |++++...
T Consensus       264 ~-----~G~~~~~~~~~~~~~-~~~g~~v~~g~  290 (369)
T cd08301         264 C-----TGNIDAMISAFECVH-DGWGVTVLLGV  290 (369)
T ss_pred             C-----CCChHHHHHHHHHhh-cCCCEEEEECc
Confidence            4     223457888889999 86 99887554

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=91.75  E-value=1.2  Score=39.87  Aligned_cols=99  Identities=10%  Similarity=0.111  Sum_probs=66.4

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCC---cEEEEcCCHHHHHHHHc----C--CCceEEecCCccchhhhhhcc---CCCC
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFE---NVIGTETSPKQIEFATK----L--PNIRYELTSPAMSIAELEQNV---AAQS   99 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~----~--~~~~~~~~~~~~~~~d~~~~~---~~~~   99 (265)
                      .++.+|||+.+-+|.=|.+++....   -|++-|.+..-+...+.    +  .|.....       .|...++   ++. 
T Consensus       240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n-------~D~~ef~~~~~~~-  311 (460)
T KOG1122|consen  240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSN-------YDGREFPEKEFPG-  311 (460)
T ss_pred             CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEc-------cCcccccccccCc-
Confidence            3568999999999999998887654   49999999988876653    2  2322222       3333222   233 


Q ss_pred             ceeEEEeccc-----c-------ccCC-----------hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          100 TVDLVTIAQA-----M-------HWFD-----------LPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       100 ~~Dlv~~~~~-----~-------~~~~-----------~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +||-|+....     +       -|..           ..+++..+..+++ +||+|+..+..
T Consensus       312 ~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~-~GGvLVYSTCS  373 (460)
T KOG1122|consen  312 SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVK-AGGVLVYSTCS  373 (460)
T ss_pred             ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhcc-CCcEEEEEeee
Confidence            7998885331     1       1110           1257788899999 99999987765

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=91.70  E-value=0.24  Score=41.57  Aligned_cols=40  Identities=20%  Similarity=0.140  Sum_probs=30.0

Q ss_pred             CCeEEEEcCCcchhHHHHHhcC----------CcEEEEcCCHHHHHHHHc
Q 024647           34 HELAWDVGTGSGQAAASLSGIF----------ENVIGTETSPKQIEFATK   73 (265)
Q Consensus        34 ~~~vlDvGcG~G~~~~~l~~~~----------~~v~~vD~s~~~~~~a~~   73 (265)
                      +-+|+|+|+|+|.++..+++..          -+++.||+|+.+.+.-++
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~   68 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKE   68 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHH
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHH
Confidence            3689999999999999987532          259999999999875543

; PDB: 4F3N_A 1ZKD_B.

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=91.60  E-value=2.6  Score=36.39  Aligned_cols=97  Identities=20%  Similarity=0.175  Sum_probs=61.3

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CCc-EEEEcCCHHHHHHHHcCCCceEEecCCccchhhh-hhccCCCCceeEEEec
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FEN-VIGTETSPKQIEFATKLPNIRYELTSPAMSIAEL-EQNVAAQSTVDLVTIA  107 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~Dlv~~~  107 (265)
                      .++.+||-+|+|. |..+..+++. +.+ +++++.++...+.+++..-.......-    .+. .........+|+++..
T Consensus       158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~~~~~~~vd~v~~~  233 (334)
T cd08234         158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSR----EDPEAQKEDNPYGFDVVIEA  233 (334)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCC----CCHHHHHHhcCCCCcEEEEC
Confidence            4567888888763 6666666665 446 899999999888876532112221110    000 0011234569999864


Q ss_pred             cccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                           ......+.++.+.|+ ++|.++....
T Consensus       234 -----~~~~~~~~~~~~~l~-~~G~~v~~g~  258 (334)
T cd08234         234 -----TGVPKTLEQAIEYAR-RGGTVLVFGV  258 (334)
T ss_pred             -----CCChHHHHHHHHHHh-cCCEEEEEec
Confidence                 223468888999999 9999987554

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=91.50  E-value=3.5  Score=36.03  Aligned_cols=100  Identities=13%  Similarity=0.108  Sum_probs=66.9

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCCc-cchhhhhhccCCCCceeEEEec
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSPA-MSIAELEQNVAAQSTVDLVTIA  107 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~Dlv~~~  107 (265)
                      +++.+|.-+|||. |..+..-++. ++ +|+++|+++.-++.|+++...++....-. .+..-+.++  .++..|.++-.
T Consensus       184 ~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~--T~gG~d~~~e~  261 (366)
T COG1062         184 EPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVEL--TDGGADYAFEC  261 (366)
T ss_pred             CCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHh--cCCCCCEEEEc
Confidence            4678899999986 6666665543 44 69999999999999999766666654311 011112222  23356666432


Q ss_pred             cccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                           ......++.....+. .+|..++....
T Consensus       262 -----~G~~~~~~~al~~~~-~~G~~v~iGv~  287 (366)
T COG1062         262 -----VGNVEVMRQALEATH-RGGTSVIIGVA  287 (366)
T ss_pred             -----cCCHHHHHHHHHHHh-cCCeEEEEecC
Confidence                 344569999999999 79998876654

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=91.47  E-value=0.47  Score=36.75  Aligned_cols=98  Identities=13%  Similarity=0.089  Sum_probs=55.6

Q ss_pred             CCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcCCCceEEecCCccchhh-hhhccCCCCceeEEEeccccc
Q 024647           34 HELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAE-LEQNVAAQSTVDLVTIAQAMH  111 (265)
Q Consensus        34 ~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~Dlv~~~~~~~  111 (265)
                      +++.+-+|...=-.=....++++ +|+.||.++--++.--+ ..+.-..      ..| +.++..-.++||.+.|..++.
T Consensus         2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~-dr~ssi~------p~df~~~~~~y~~~fD~~as~~siE   74 (177)
T PF03269_consen    2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFR-DRLSSIL------PVDFAKNWQKYAGSFDFAASFSSIE   74 (177)
T ss_pred             CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccc-ccccccc------HHHHHHHHHHhhccchhhheechhc
Confidence            34567777653322223334555 58888876533221110 1110000      011 122323457899999988775


Q ss_pred             cCC------h------hHHHHHHHHHhcCCCcEEEEEecC
Q 024647          112 WFD------L------PQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       112 ~~~------~------~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      ++.      |      ...+.++.++|| |||.|++..+-
T Consensus        75 h~GLGRYGDPidp~Gdl~~m~~i~~vLK-~GG~L~l~vPv  113 (177)
T PF03269_consen   75 HFGLGRYGDPIDPIGDLRAMAKIKCVLK-PGGLLFLGVPV  113 (177)
T ss_pred             cccccccCCCCCccccHHHHHHHHHhhc-cCCeEEEEeec
Confidence            442      2      368889999999 99999986664

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=91.46  E-value=0.67  Score=42.15  Aligned_cols=114  Identities=17%  Similarity=0.163  Sum_probs=71.9

Q ss_pred             CCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC--------CCceEEecCCccchhhhhhcc---CCCCc
Q 024647           34 HELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL--------PNIRYELTSPAMSIAELEQNV---AAQST  100 (265)
Q Consensus        34 ~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~d~~~~~---~~~~~  100 (265)
                      ...+|-+|-|.|.+...+....+  .+++|+++|.|++.|+..        .+++...+.     ..++++.   ..+..
T Consensus       296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl-----~~~~~~~k~~~~~~~  370 (482)
T KOG2352|consen  296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGL-----DFLQRTAKSQQEDIC  370 (482)
T ss_pred             cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhch-----HHHHHHhhccccccC
Confidence            35689999999999999877665  699999999999999852        122222211     1122221   24557


Q ss_pred             eeEEEecc---ccccC--Ch-----hHHHHHHHHHhcCCCcEEEEE-ecCCCCCChHHHHhhcc
Q 024647          101 VDLVTIAQ---AMHWF--DL-----PQFYNQVKWVLKKPNGVIATW-CYTVPEVNVSVDAVFQP  153 (265)
Q Consensus       101 ~Dlv~~~~---~~~~~--~~-----~~~l~~~~~~Lk~pgG~l~~~-~~~~~~~~~~~~~~~~~  153 (265)
                      ||++...-   -.|=.  .+     ..++..+..+|. |.|.+++- ...+..+...+..-++.
T Consensus       371 ~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~-p~g~f~inlv~r~~~~~~~~~~~l~~  433 (482)
T KOG2352|consen  371 PDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILP-PRGMFIINLVTRNSSFKDEVLMNLAK  433 (482)
T ss_pred             CcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccC-ccceEEEEEecCCcchhHHHHHhhhh
Confidence            99988632   12222  22     357888999999 99999873 33344555555443333

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=91.43  E-value=4.1  Score=35.42  Aligned_cols=100  Identities=21%  Similarity=0.235  Sum_probs=59.1

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-C-CcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-F-ENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      .++.+||=.|+|. |..+..+++. + .+|++++.++.....+++..-..+....-......+..+ .....+|+|+...
T Consensus       165 ~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~-~~~~~~d~vld~~  243 (345)
T cd08286         165 KPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAKGDAIEQVLEL-TDGRGVDVVIEAV  243 (345)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCceeccccccHHHHHHHH-hCCCCCCEEEECC
Confidence            4556776678754 5555556654 4 468899999888777765421111111100000112222 2345699998542


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                           .....+..+.+.|+ ++|+++....
T Consensus       244 -----g~~~~~~~~~~~l~-~~g~~v~~g~  267 (345)
T cd08286         244 -----GIPATFELCQELVA-PGGHIANVGV  267 (345)
T ss_pred             -----CCHHHHHHHHHhcc-CCcEEEEecc
Confidence                 23456888889999 9999986543

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=91.39  E-value=0.25  Score=40.59  Aligned_cols=97  Identities=15%  Similarity=0.180  Sum_probs=57.0

Q ss_pred             hCCCCcHHHHHHHHhhC----CCCCeEEEEcCCcchhHHH--HHhcCCcEEEEcCCHHHHHHHHcC--C------CceEE
Q 024647           15 TRPNYPEELFKFITSKT----TNHELAWDVGTGSGQAAAS--LSGIFENVIGTETSPKQIEFATKL--P------NIRYE   80 (265)
Q Consensus        15 ~rp~y~~~l~~~l~~~~----~~~~~vlDvGcG~G~~~~~--l~~~~~~v~~vD~s~~~~~~a~~~--~------~~~~~   80 (265)
                      .|.+|---+.+.|.+..    ++.-++||||.|.-..=-.  ..+.+.+.+|.|+++..++.|+..  .      .++..
T Consensus        56 gRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr  135 (292)
T COG3129          56 GRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLR  135 (292)
T ss_pred             ChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEE
Confidence            45556555666666543    2456789998875422111  234567899999999999988741  1      12222


Q ss_pred             ecCCccchhhhhhccCCCCceeEEEeccccccC
Q 024647           81 LTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF  113 (265)
Q Consensus        81 ~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~  113 (265)
                      ...-.  ..-+..+.-.++.||+++|+-.+|-.
T Consensus       136 ~qk~~--~~if~giig~nE~yd~tlCNPPFh~s  166 (292)
T COG3129         136 RQKDS--DAIFNGIIGKNERYDATLCNPPFHDS  166 (292)
T ss_pred             eccCc--cccccccccccceeeeEecCCCcchh
Confidence            21100  00011221236789999999998854

>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B

Probab=91.28  E-value=0.42  Score=36.41  Aligned_cols=109  Identities=14%  Similarity=0.131  Sum_probs=53.6

Q ss_pred             HHHHHHHhhC-CCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCC
Q 024647           22 ELFKFITSKT-TNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQ   98 (265)
Q Consensus        22 ~l~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   98 (265)
                      ..+++..... ..+.-|||+|-|.|..=-+|.+.++  +|++.|-.-..-..+.. +.-.++.++++-+   +..++.-.
T Consensus        16 ~~L~~a~~~v~~~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P-~~~~~ilGdi~~t---l~~~~~~g   91 (160)
T PF12692_consen   16 DCLNWAAAQVAGLPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTP-PEEDLILGDIRET---LPALARFG   91 (160)
T ss_dssp             HHHHHHHHHTTT--S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG----GGGEEES-HHHH---HHHHHHH-
T ss_pred             HHHHHHHHHhcCCCCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCC-chHheeeccHHHH---hHHHHhcC
Confidence            3455555544 3446799999999999999999886  59988864332222221 3456677443211   11111223


Q ss_pred             CceeEEEeccccccCChh-----HHHHHHHHHhcCCCcEEEE
Q 024647           99 STVDLVTIAQAMHWFDLP-----QFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus        99 ~~~Dlv~~~~~~~~~~~~-----~~l~~~~~~Lk~pgG~l~~  135 (265)
                      .+.-++.+....|.-+..     .+-..+..+|. |||.++-
T Consensus        92 ~~a~laHaD~G~g~~~~d~a~a~~lspli~~~la-~gGi~vS  132 (160)
T PF12692_consen   92 AGAALAHADIGTGDKEKDDATAAWLSPLIAPVLA-PGGIMVS  132 (160)
T ss_dssp             S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEE-EEEEEEE
T ss_pred             CceEEEEeecCCCCcchhHHHHHhhhHHHHHHhc-CCcEEEe
Confidence            456666666666654322     23445678889 8998875

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=91.24  E-value=3.7  Score=35.41  Aligned_cols=98  Identities=17%  Similarity=0.082  Sum_probs=61.5

Q ss_pred             CCCCeEEEEcC-C-cchhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCC-ccchhhhhhccCCCCceeEEEec
Q 024647           32 TNHELAWDVGT-G-SGQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSP-AMSIAELEQNVAAQSTVDLVTIA  107 (265)
Q Consensus        32 ~~~~~vlDvGc-G-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~Dlv~~~  107 (265)
                      .++.+||=.|+ | .|..+..+++. +.+|++++.+++..+.++++.--......- ..........  ..+.+|+|+-.
T Consensus       137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~--~~~gvdvv~d~  214 (325)
T TIGR02825       137 KGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKA--SPDGYDCYFDN  214 (325)
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHh--CCCCeEEEEEC
Confidence            56788888884 3 47777777765 568999999999888887643212221110 0000111222  23469999864


Q ss_pred             cccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      .     . ...+..+.+.|+ ++|+++....
T Consensus       215 ~-----G-~~~~~~~~~~l~-~~G~iv~~G~  238 (325)
T TIGR02825       215 V-----G-GEFSNTVIGQMK-KFGRIAICGA  238 (325)
T ss_pred             C-----C-HHHHHHHHHHhC-cCcEEEEecc
Confidence            2     2 235688899999 9999987543

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=91.21  E-value=4.7  Score=35.24  Aligned_cols=101  Identities=16%  Similarity=0.137  Sum_probs=64.2

Q ss_pred             CCCCCeEEEEcCC--cchhHHHHHhcCC-cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647           31 TTNHELAWDVGTG--SGQAAASLSGIFE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIA  107 (265)
Q Consensus        31 ~~~~~~vlDvGcG--~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~  107 (265)
                      .+++++||-.|+.  -|.++.+|++... .++++--+++-.+.++++..-..+.-.-+.....+.++ .....+|+|+..
T Consensus       140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~-t~g~gvDvv~D~  218 (326)
T COG0604         140 LKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVREL-TGGKGVDVVLDT  218 (326)
T ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHH-cCCCCceEEEEC
Confidence            3567889888854  3688888888764 88888888877777776533222221110011222223 233479999975


Q ss_pred             cccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      -.      ...+.+..+.|+ ++|.++.....
T Consensus       219 vG------~~~~~~~l~~l~-~~G~lv~ig~~  243 (326)
T COG0604         219 VG------GDTFAASLAALA-PGGRLVSIGAL  243 (326)
T ss_pred             CC------HHHHHHHHHHhc-cCCEEEEEecC
Confidence            33      457777899999 89999876553

>cd05281 TDH Threonine dehydrogenase

Probab=91.06  E-value=3.2  Score=36.12  Aligned_cols=99  Identities=19%  Similarity=0.193  Sum_probs=58.9

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      .++.+||-.|||. |..+..+++. +. +|++++-++.-...++++.-..+......... .+..+ ...+.+|+|+..-
T Consensus       162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~-~~~~~vd~vld~~  239 (341)
T cd05281         162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINPREEDVV-EVKSV-TDGTGVDVVLEMS  239 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcceeeCcccccHH-HHHHH-cCCCCCCEEEECC
Confidence            4556777778765 6677777765 44 58888888877776665321111111110000 12222 2345789998642


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                           .......++.+.|+ ++|.++....
T Consensus       240 -----g~~~~~~~~~~~l~-~~G~~v~~g~  263 (341)
T cd05281         240 -----GNPKAIEQGLKALT-PGGRVSILGL  263 (341)
T ss_pred             -----CCHHHHHHHHHHhc-cCCEEEEEcc
Confidence                 22457888899999 9999886543

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=91.01  E-value=4.3  Score=35.11  Aligned_cols=99  Identities=16%  Similarity=0.136  Sum_probs=60.8

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-C-CcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-F-ENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      .++.+||-.|+|. |..+..+++. + .+|++++.++...+.+++..-......... ....+..+ .+...+|+|+...
T Consensus       166 ~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~i~~~-~~~~~~dvvld~~  243 (340)
T cd05284         166 DPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAERLGADHVLNASDD-VVEEVREL-TGGRGADAVIDFV  243 (340)
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHhCCcEEEcCCcc-HHHHHHHH-hCCCCCCEEEEcC
Confidence            4567888888664 5555556654 4 589999999888887765421122221111 11222223 2334699998642


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                           .....+.++.+.|+ ++|+++....
T Consensus       244 -----g~~~~~~~~~~~l~-~~g~~i~~g~  267 (340)
T cd05284         244 -----GSDETLALAAKLLA-KGGRYVIVGY  267 (340)
T ss_pred             -----CCHHHHHHHHHHhh-cCCEEEEEcC
Confidence                 22457888899999 9999986543

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=90.87  E-value=4.1  Score=35.01  Aligned_cols=97  Identities=16%  Similarity=0.080  Sum_probs=61.4

Q ss_pred             CCCCeEEEEcC--CcchhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           32 TNHELAWDVGT--GSGQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        32 ~~~~~vlDvGc--G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      .++.+||-.|+  |.|..+..+++. +.+|++++.+++..+.++++.-..............+..+  ..+.+|+|+-..
T Consensus       142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~--~~~gvd~vld~~  219 (329)
T cd08294         142 KAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEA--APDGIDCYFDNV  219 (329)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHH--CCCCcEEEEECC
Confidence            46678888874  347777777765 5689999999998888876432222222111111122222  225699988542


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      .      ...+..+.+.|+ ++|+++...
T Consensus       220 g------~~~~~~~~~~l~-~~G~iv~~g  241 (329)
T cd08294         220 G------GEFSSTVLSHMN-DFGRVAVCG  241 (329)
T ss_pred             C------HHHHHHHHHhhc-cCCEEEEEc
Confidence            2      256788999999 999998654

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=90.85  E-value=4.2  Score=35.64  Aligned_cols=99  Identities=17%  Similarity=0.096  Sum_probs=59.7

Q ss_pred             CCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCCccch---hhhhhccCCCCceeEEEe
Q 024647           33 NHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSI---AELEQNVAAQSTVDLVTI  106 (265)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~Dlv~~  106 (265)
                      ++.+||-.|+|. |..+..+++. +. +|++++.++...+.+++..-..++........   ..+..+ .....+|+|+.
T Consensus       177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~-~~~~~~d~vid  255 (361)
T cd08231         177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATIDIDELPDPQRRAIVRDI-TGGRGADVVIE  255 (361)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCeEEcCcccccHHHHHHHHHH-hCCCCCcEEEE
Confidence            566788888764 5666666654 55 79999999988887765421112211100000   012222 23356999985


Q ss_pred             ccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          107 AQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       107 ~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      ..     .....+....+.|+ ++|.++....
T Consensus       256 ~~-----g~~~~~~~~~~~l~-~~G~~v~~g~  281 (361)
T cd08231         256 AS-----GHPAAVPEGLELLR-RGGTYVLVGS  281 (361)
T ss_pred             CC-----CChHHHHHHHHHhc-cCCEEEEEcC
Confidence            42     22357888899999 9999987553

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=90.73  E-value=3.4  Score=36.49  Aligned_cols=99  Identities=15%  Similarity=0.083  Sum_probs=60.9

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCC--ccchhhhhhccCCCCceeEEEe
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSP--AMSIAELEQNVAAQSTVDLVTI  106 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~Dlv~~  106 (265)
                      .++.+||-.|+|. |..+..+++. +. +|+++|.++..++.++++.-..+....-  ......+..+. . +.+|+|+-
T Consensus       183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~-~-~g~d~vid  260 (365)
T cd08277         183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPKDSDKPVSEVIREMT-G-GGVDYSFE  260 (365)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEeccccccchHHHHHHHHh-C-CCCCEEEE
Confidence            4678888889875 6666666665 45 6999999999998887642111221110  00001122221 2 46899985


Q ss_pred             ccccccCChhHHHHHHHHHhcCCC-cEEEEEec
Q 024647          107 AQAMHWFDLPQFYNQVKWVLKKPN-GVIATWCY  138 (265)
Q Consensus       107 ~~~~~~~~~~~~l~~~~~~Lk~pg-G~l~~~~~  138 (265)
                      ..     .....+.++.+.|+ ++ |.++....
T Consensus       261 ~~-----g~~~~~~~~~~~l~-~~~G~~v~~g~  287 (365)
T cd08277         261 CT-----GNADLMNEALESTK-LGWGVSVVVGV  287 (365)
T ss_pred             CC-----CChHHHHHHHHhcc-cCCCEEEEEcC
Confidence            42     22457788899998 75 99887654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>cd08293 PTGR2 Prostaglandin reductase

Probab=90.71  E-value=3.9  Score=35.49  Aligned_cols=94  Identities=14%  Similarity=0.033  Sum_probs=58.7

Q ss_pred             CeEEEEcC--CcchhHHHHHhc-CC-cEEEEcCCHHHHHHHHc-CCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647           35 ELAWDVGT--GSGQAAASLSGI-FE-NVIGTETSPKQIEFATK-LPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA  109 (265)
Q Consensus        35 ~~vlDvGc--G~G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~  109 (265)
                      ++||-.|+  |.|..+..+++. +. +|++++.+++..+.+++ +.--......-......+..+  .++.+|+|+....
T Consensus       156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~--~~~gvd~vid~~g  233 (345)
T cd08293         156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLREL--CPEGVDVYFDNVG  233 (345)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHH--CCCCceEEEECCC
Confidence            78888886  357788777775 55 69999999988887754 322122221111011122222  2256999986422


Q ss_pred             cccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647          110 MHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       110 ~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                            ...+.++.+.|+ ++|+++...
T Consensus       234 ------~~~~~~~~~~l~-~~G~iv~~G  254 (345)
T cd08293         234 ------GEISDTVISQMN-ENSHIILCG  254 (345)
T ss_pred             ------cHHHHHHHHHhc-cCCEEEEEe
Confidence                  124688899999 999998754

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=90.67  E-value=3.7  Score=35.38  Aligned_cols=90  Identities=13%  Similarity=0.112  Sum_probs=54.0

Q ss_pred             cCCc-chhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccccccCChhHH
Q 024647           41 GTGS-GQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQF  118 (265)
Q Consensus        41 GcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~  118 (265)
                      |+|. |..+..+++. +.++++++.++...+.++++................+... .....+|+++....      ...
T Consensus       152 g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~v~~~-~~~~~~d~vid~~g------~~~  224 (324)
T cd08291         152 AASALGRMLVRLCKADGIKVINIVRRKEQVDLLKKIGAEYVLNSSDPDFLEDLKEL-IAKLNATIFFDAVG------GGL  224 (324)
T ss_pred             CccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEECCCccHHHHHHHH-hCCCCCcEEEECCC------cHH
Confidence            5554 7777777664 5689999999998888887532223322111011122222 23346899986422      233


Q ss_pred             HHHHHHHhcCCCcEEEEEec
Q 024647          119 YNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       119 l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      .....+.|+ ++|+++....
T Consensus       225 ~~~~~~~l~-~~G~~v~~g~  243 (324)
T cd08291         225 TGQILLAMP-YGSTLYVYGY  243 (324)
T ss_pred             HHHHHHhhC-CCCEEEEEEe
Confidence            456688899 8999987553

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=90.66  E-value=2.9  Score=35.04  Aligned_cols=92  Identities=21%  Similarity=0.189  Sum_probs=60.0

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CCc-EEEEcCCHHHHHHHHcCC-CceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FEN-VIGTETSPKQIEFATKLP-NIRYELTSPAMSIAELEQNVAAQSTVDLVTIA  107 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~  107 (265)
                      .++.++|-.|||. |..+..+++. +.+ |++++.+++.++.+++.. .-....       .. +.. .....+|+|+..
T Consensus        96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~-------~~-~~~-~~~~~~d~vl~~  166 (277)
T cd08255          96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAA-------DT-ADE-IGGRGADVVIEA  166 (277)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccc-------cc-hhh-hcCCCCCEEEEc
Confidence            4667788888876 7777777664 456 999999999888777642 001111       00 011 134468988853


Q ss_pred             cccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      .     .....+....+.|+ ++|.++....
T Consensus       167 ~-----~~~~~~~~~~~~l~-~~g~~~~~g~  191 (277)
T cd08255         167 S-----GSPSALETALRLLR-DRGRVVLVGW  191 (277)
T ss_pred             c-----CChHHHHHHHHHhc-CCcEEEEEec
Confidence            1     22457888899999 9999987544

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=90.58  E-value=3.5  Score=35.50  Aligned_cols=94  Identities=17%  Similarity=0.086  Sum_probs=59.8

Q ss_pred             CCCCeEEEEcCC-cchhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647           32 TNHELAWDVGTG-SGQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA  109 (265)
Q Consensus        32 ~~~~~vlDvGcG-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~  109 (265)
                      .++.+||-.||| .|..+..+++. +.+|++++.++..++.+++............   .....   ..+.+|+++... 
T Consensus       161 ~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~---~~~~~d~vi~~~-  233 (330)
T cd08245         161 RPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAE---LDEQA---AAGGADVILVTV-  233 (330)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCc---chHHh---ccCCCCEEEECC-
Confidence            456788888987 47776666665 5689999999999888765321111111100   01111   124689888542 


Q ss_pred             cccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647          110 MHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       110 ~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                          .....+..+.+.|+ ++|.++...
T Consensus       234 ----~~~~~~~~~~~~l~-~~G~~i~~~  256 (330)
T cd08245         234 ----VSGAAAEAALGGLR-RGGRIVLVG  256 (330)
T ss_pred             ----CcHHHHHHHHHhcc-cCCEEEEEC
Confidence                22457888899999 999988654

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=90.57  E-value=0.82  Score=40.18  Aligned_cols=97  Identities=14%  Similarity=0.212  Sum_probs=66.6

Q ss_pred             CCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcCCCceEE-ecCCccchhhhhhccC-CCCceeEEEeccc
Q 024647           34 HELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKLPNIRYE-LTSPAMSIAELEQNVA-AQSTVDLVTIAQA  109 (265)
Q Consensus        34 ~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~~d~~~~~~-~~~~~Dlv~~~~~  109 (265)
                      ..+|+|.=+|||.=+..++....  +++.-|+||..++..+.  |+... ..+..+.+.|+..+-. ....||+|=..  
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~--Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDiD--  128 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKE--NVRLNSGEDAEVINKDANALLHELHRAFDVIDID--  128 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHH--HHHhcCcccceeecchHHHHHHhcCCCccEEecC--
Confidence            57899999999998888876543  69999999999999885  22222 2233333345444321 12567766532  


Q ss_pred             cccC-ChhHHHHHHHHHhcCCCcEEEEEe
Q 024647          110 MHWF-DLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       110 ~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                        -+ .|..+++.+.+.++ .||.+.+..
T Consensus       129 --PFGSPaPFlDaA~~s~~-~~G~l~vTA  154 (380)
T COG1867         129 --PFGSPAPFLDAALRSVR-RGGLLCVTA  154 (380)
T ss_pred             --CCCCCchHHHHHHHHhh-cCCEEEEEe
Confidence              12 46689999999999 899998743

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=90.48  E-value=3  Score=36.13  Aligned_cols=96  Identities=13%  Similarity=0.102  Sum_probs=60.5

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhh-hccCCCCceeEEEecc
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELE-QNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~Dlv~~~~  108 (265)
                      .++.+||-.|||. |..+..+++. +.++++++.++..++.++++. +.......+   .+.. .+. ....+|+++.. 
T Consensus       162 ~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g-~~~~i~~~~---~~~~~~~~-~~~~~d~vi~~-  235 (333)
T cd08296         162 KPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLG-AHHYIDTSK---EDVAEALQ-ELGGAKLILAT-  235 (333)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcC-CcEEecCCC---ccHHHHHH-hcCCCCEEEEC-
Confidence            4567888889764 6666666664 558999999988888887643 222211110   1111 111 11358888853 


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                          ......+..+.+.|+ ++|+++....
T Consensus       236 ----~g~~~~~~~~~~~l~-~~G~~v~~g~  260 (333)
T cd08296         236 ----APNAKAISALVGGLA-PRGKLLILGA  260 (333)
T ss_pred             ----CCchHHHHHHHHHcc-cCCEEEEEec
Confidence                112467888999999 9999987554

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=90.20  E-value=2.9  Score=36.86  Aligned_cols=96  Identities=17%  Similarity=0.094  Sum_probs=57.1

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA  109 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~  109 (265)
                      .++.+||-.|+|. |..+..+++. +.++++++.++.....+.+.-+.........  ...+...   ...+|+|+-.. 
T Consensus       179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~--~~~~~~~---~~~~D~vid~~-  252 (357)
T PLN02514        179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSD--AAEMQEA---ADSLDYIIDTV-  252 (357)
T ss_pred             CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCC--hHHHHHh---cCCCcEEEECC-
Confidence            3567788788875 7777777765 4578888888876655432112221111110  0112222   12488888542 


Q ss_pred             cccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          110 MHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       110 ~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                          .....+..+.+.|+ ++|+++....
T Consensus       253 ----g~~~~~~~~~~~l~-~~G~iv~~G~  276 (357)
T PLN02514        253 ----PVFHPLEPYLSLLK-LDGKLILMGV  276 (357)
T ss_pred             ----CchHHHHHHHHHhc-cCCEEEEECC
Confidence                22457888899999 9999987554

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=90.08  E-value=5  Score=35.71  Aligned_cols=101  Identities=20%  Similarity=0.156  Sum_probs=61.7

Q ss_pred             CCCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCCc----cchhhhhhccCCCCceeE
Q 024647           31 TTNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSPA----MSIAELEQNVAAQSTVDL  103 (265)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~----~~~~d~~~~~~~~~~~Dl  103 (265)
                      ..++.+||-.|||. |..+..+++. +. +|++++.++...+.+++.. +......-.    .....+..+ .....+|+
T Consensus       201 ~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~v~~~-~~g~gvDv  278 (384)
T cd08265         201 FRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMG-ADYVFNPTKMRDCLSGEKVMEV-TKGWGADI  278 (384)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC-CCEEEcccccccccHHHHHHHh-cCCCCCCE
Confidence            34567777778865 6666666654 45 6999999998777777642 222211100    000112223 23456999


Q ss_pred             EEeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          104 VTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       104 v~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      |+....    +....+.++.+.|+ ++|+++....
T Consensus       279 vld~~g----~~~~~~~~~~~~l~-~~G~~v~~g~  308 (384)
T cd08265         279 QVEAAG----APPATIPQMEKSIA-INGKIVYIGR  308 (384)
T ss_pred             EEECCC----CcHHHHHHHHHHHH-cCCEEEEECC
Confidence            986422    33467889999999 9999987653

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=90.02  E-value=4.9  Score=34.88  Aligned_cols=100  Identities=18%  Similarity=0.118  Sum_probs=60.7

Q ss_pred             CCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647           33 NHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA  109 (265)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~  109 (265)
                      ++++||-.|+|. |..+..+++. +. +|++++.++...+.++++..-.+....-......+..+ .....+|+|+... 
T Consensus       163 ~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~-~~~~~~d~v~d~~-  240 (341)
T PRK05396        163 VGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNVAKEDLRDVMAEL-GMTEGFDVGLEMS-  240 (341)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHHHh-cCCCCCCEEEECC-
Confidence            556777788765 6677677765 44 58888988888777665422122211100000112222 2345689998632 


Q ss_pred             cccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          110 MHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       110 ~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                          .....+..+.+.|+ ++|.++.....
T Consensus       241 ----g~~~~~~~~~~~l~-~~G~~v~~g~~  265 (341)
T PRK05396        241 ----GAPSAFRQMLDNMN-HGGRIAMLGIP  265 (341)
T ss_pred             ----CCHHHHHHHHHHHh-cCCEEEEEecC
Confidence                22467888999999 99999876543

>PRK11524 putative methyltransferase; Provisional

Probab=89.70  E-value=0.37  Score=41.19  Aligned_cols=41  Identities=20%  Similarity=0.296  Sum_probs=30.0

Q ss_pred             CCCCceeEEEeccccc----cCC-------------hhHHHHHHHHHhcCCCcEEEEEe
Q 024647           96 AAQSTVDLVTIAQAMH----WFD-------------LPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        96 ~~~~~~Dlv~~~~~~~----~~~-------------~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      ++++++|+|+++-...    +.+             ...++.++.++|| |||.+++..
T Consensus        23 l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK-~~G~i~i~~   80 (284)
T PRK11524         23 IPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLK-KQGTMYIMN   80 (284)
T ss_pred             cccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhC-CCcEEEEEc
Confidence            5678999999964321    100             1468899999999 999998754

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=89.64  E-value=8.4  Score=33.43  Aligned_cols=100  Identities=16%  Similarity=0.137  Sum_probs=58.8

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CCc-EEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FEN-VIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      .++.+||-.|+|. |..+..+++. +.+ |++++-++...+.++++.-..............+..+ .....+|+++.. 
T Consensus       160 ~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~l~~~-~~~~~~d~vld~-  237 (340)
T TIGR00692       160 ISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPFKEDVVKEVADL-TDGEGVDVFLEM-  237 (340)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEEcccccCHHHHHHHh-cCCCCCCEEEEC-
Confidence            4556676677763 6666666654 555 8899888887777765422112211100000112222 234568999864 


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                          ......+.++.+.|+ ++|+++....
T Consensus       238 ----~g~~~~~~~~~~~l~-~~g~~v~~g~  262 (340)
T TIGR00692       238 ----SGAPKALEQGLQAVT-PGGRVSLLGL  262 (340)
T ss_pred             ----CCCHHHHHHHHHhhc-CCCEEEEEcc
Confidence                122457889999999 9999876543

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=89.51  E-value=5.9  Score=34.86  Aligned_cols=100  Identities=14%  Similarity=0.120  Sum_probs=60.3

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CCc-EEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FEN-VIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      .++.+||-.|+|. |..+..+++. +.+ |++++.++...+.++...-..+...........+..+ .+...+|+++...
T Consensus       181 ~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g~~~vv~~~~~~~~~~l~~~-~~~~~vd~vld~~  259 (363)
T cd08279         181 RPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTVNASEDDAVEAVRDL-TDGRGADYAFEAV  259 (363)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhCCeEEeCCCCccHHHHHHHH-cCCCCCCEEEEcC
Confidence            4567787778763 6666666654 455 9999999988887765321112111110000112222 2345699888532


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                           .....+..+.+.|+ ++|+++....
T Consensus       260 -----~~~~~~~~~~~~l~-~~G~~v~~g~  283 (363)
T cd08279         260 -----GRAATIRQALAMTR-KGGTAVVVGM  283 (363)
T ss_pred             -----CChHHHHHHHHHhh-cCCeEEEEec
Confidence                 22457889999999 9999987654

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=89.41  E-value=4.5  Score=34.70  Aligned_cols=88  Identities=18%  Similarity=0.243  Sum_probs=58.3

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHh-cCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647           32 TNHELAWDVGTGS-GQAAASLSG-IFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA  109 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~  109 (265)
                      .++.+||-.|+|. |..+..+++ .+.++++++.+++..+.++++ ++......        ... ...+.+|+++..  
T Consensus       154 ~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~~-g~~~~~~~--------~~~-~~~~~~d~vid~--  221 (319)
T cd08242         154 TPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARRL-GVETVLPD--------EAE-SEGGGFDVVVEA--  221 (319)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHc-CCcEEeCc--------ccc-ccCCCCCEEEEC--
Confidence            4567888888754 555555554 466899999999999988763 33322211        111 244569999864  


Q ss_pred             cccCChhHHHHHHHHHhcCCCcEEEE
Q 024647          110 MHWFDLPQFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus       110 ~~~~~~~~~l~~~~~~Lk~pgG~l~~  135 (265)
                         ......+..+.+.|+ ++|.+++
T Consensus       222 ---~g~~~~~~~~~~~l~-~~g~~v~  243 (319)
T cd08242         222 ---TGSPSGLELALRLVR-PRGTVVL  243 (319)
T ss_pred             ---CCChHHHHHHHHHhh-cCCEEEE
Confidence               222457788889999 8999986

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=89.16  E-value=1.9  Score=37.91  Aligned_cols=41  Identities=17%  Similarity=0.152  Sum_probs=32.4

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcC----------CcEEEEcCCHHHHHHHH
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIF----------ENVIGTETSPKQIEFAT   72 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~----------~~v~~vD~s~~~~~~a~   72 (265)
                      +.+-.++|+|.|+|.+..-+++..          .++..||+|++..+.-+
T Consensus        76 p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk  126 (370)
T COG1565          76 PAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQK  126 (370)
T ss_pred             CCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHH
Confidence            345679999999999998876532          36999999999887544

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=89.14  E-value=5.7  Score=34.99  Aligned_cols=99  Identities=17%  Similarity=0.198  Sum_probs=58.8

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CCc-EEEEcCCHHHHHHHHcCCCce-EEecCCccchhhhhhccCCCCceeEEEec
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FEN-VIGTETSPKQIEFATKLPNIR-YELTSPAMSIAELEQNVAAQSTVDLVTIA  107 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~  107 (265)
                      .++.+||-.|+|. |..+..+++. +.+ +++++.++...+.+++.. +. +...........+... ..+..+|+|+..
T Consensus       186 ~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g-~~~v~~~~~~~~~~~l~~~-~~~~~~d~vld~  263 (367)
T cd08263         186 RPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELG-ATHTVNAAKEDAVAAIREI-TGGRGVDVVVEA  263 (367)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhC-CceEecCCcccHHHHHHHH-hCCCCCCEEEEe
Confidence            3556777667653 6666666654 456 999999998888776532 22 2211110000112222 234569999864


Q ss_pred             cccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                           ......+.++.+.|+ ++|+++....
T Consensus       264 -----vg~~~~~~~~~~~l~-~~G~~v~~g~  288 (367)
T cd08263         264 -----LGKPETFKLALDVVR-DGGRAVVVGL  288 (367)
T ss_pred             -----CCCHHHHHHHHHHHh-cCCEEEEEcc
Confidence                 211237888999999 9999987643

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>PRK13699 putative methylase; Provisional

Probab=89.13  E-value=0.52  Score=38.96  Aligned_cols=42  Identities=17%  Similarity=0.218  Sum_probs=30.0

Q ss_pred             CCCCceeEEEeccccc-----cCC-----------hhHHHHHHHHHhcCCCcEEEEEec
Q 024647           96 AAQSTVDLVTIAQAMH-----WFD-----------LPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        96 ~~~~~~Dlv~~~~~~~-----~~~-----------~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      ++++++|+|+..-...     ..+           ...++.++.|+|| |||.++++..
T Consensus        16 lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLK-pgg~l~if~~   73 (227)
T PRK13699         16 FPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLK-KDALMVSFYG   73 (227)
T ss_pred             CCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcC-CCCEEEEEec
Confidence            6888999999874221     000           1368899999999 9999887543

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=88.68  E-value=6.5  Score=34.27  Aligned_cols=96  Identities=17%  Similarity=0.081  Sum_probs=58.9

Q ss_pred             CCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCCcc-chhhhhhccCCCCceeEEEecc
Q 024647           33 NHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSPAM-SIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      ++.+||-.|+|. |..+..+++. +. +|++++.++...+.+++.. +......-.. ....+... ... .+|+++...
T Consensus       175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~-~~~-~~d~vid~~  251 (350)
T cd08240         175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAAG-ADVVVNGSDPDAAKRIIKA-AGG-GVDAVIDFV  251 (350)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhC-CcEEecCCCccHHHHHHHH-hCC-CCcEEEECC
Confidence            557788888764 6666666654 45 6899999998888876532 2222111000 00112222 122 689998642


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                           .....+..+.+.|+ ++|+++...
T Consensus       252 -----g~~~~~~~~~~~l~-~~g~~v~~g  274 (350)
T cd08240         252 -----NNSATASLAFDILA-KGGKLVLVG  274 (350)
T ss_pred             -----CCHHHHHHHHHHhh-cCCeEEEEC
Confidence                 22467899999999 999998654

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>PRK10083 putative oxidoreductase; Provisional

Probab=88.61  E-value=6.7  Score=33.91  Aligned_cols=97  Identities=15%  Similarity=0.191  Sum_probs=58.8

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHh-c-CCc-EEEEcCCHHHHHHHHcCCCceEEecCCccchhhh-hhccCCCCceeEEEe
Q 024647           32 TNHELAWDVGTGS-GQAAASLSG-I-FEN-VIGTETSPKQIEFATKLPNIRYELTSPAMSIAEL-EQNVAAQSTVDLVTI  106 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~-~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~Dlv~~  106 (265)
                      .++.+||=.|||. |..+..+++ . +.+ ++++|.++...+.+++.. +......-.   .++ +.+.-....+|+|+.
T Consensus       159 ~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~G-a~~~i~~~~---~~~~~~~~~~g~~~d~vid  234 (339)
T PRK10083        159 TEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESG-ADWVINNAQ---EPLGEALEEKGIKPTLIID  234 (339)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhC-CcEEecCcc---ccHHHHHhcCCCCCCEEEE
Confidence            4567888899775 666666776 3 654 888999999888877642 221111100   111 112111123567765


Q ss_pred             ccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          107 AQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       107 ~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      ..     .....+.++.+.|+ ++|+++....
T Consensus       235 ~~-----g~~~~~~~~~~~l~-~~G~~v~~g~  260 (339)
T PRK10083        235 AA-----CHPSILEEAVTLAS-PAARIVLMGF  260 (339)
T ss_pred             CC-----CCHHHHHHHHHHhh-cCCEEEEEcc
Confidence            32     22357888899999 9999987654

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=88.60  E-value=1.3  Score=32.91  Aligned_cols=100  Identities=14%  Similarity=0.126  Sum_probs=51.3

Q ss_pred             HHHHHHHhhCCCCCeEEEEcCCc-chhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccC-CCC
Q 024647           22 ELFKFITSKTTNHELAWDVGTGS-GQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVA-AQS   99 (265)
Q Consensus        22 ~l~~~l~~~~~~~~~vlDvGcG~-G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~   99 (265)
                      ++.+.+...... .+++|||-|. -..+..|.+++.+|+++|+.+.   .+.  .++++..       .|+-+-.+ --.
T Consensus         3 ~~a~~ia~~~~~-~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~---~a~--~g~~~v~-------DDif~P~l~iY~   69 (127)
T PF03686_consen    3 DFAEYIARLNNY-GKIVEVGIGFNPEVAKKLKERGFDVIATDINPR---KAP--EGVNFVV-------DDIFNPNLEIYE   69 (127)
T ss_dssp             HHHHHHHHHS-S-SEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S---------STTEE----------SSS--HHHHT
T ss_pred             hHHHHHHHhCCC-CcEEEECcCCCHHHHHHHHHcCCcEEEEECccc---ccc--cCcceee-------ecccCCCHHHhc
Confidence            445556544444 5899999997 4667778888999999999998   333  5677777       33321100 012


Q ss_pred             ceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          100 TVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       100 ~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      ..|+|.+--.=  .+.+..+-++++.+   |.-+++...+
T Consensus        70 ~a~lIYSiRPP--~El~~~il~lA~~v---~adlii~pL~  104 (127)
T PF03686_consen   70 GADLIYSIRPP--PELQPPILELAKKV---GADLIIRPLG  104 (127)
T ss_dssp             TEEEEEEES----TTSHHHHHHHHHHH---T-EEEEE-BT
T ss_pred             CCcEEEEeCCC--hHHhHHHHHHHHHh---CCCEEEECCC
Confidence            58898874210  03344555555543   4556665444

; PDB: 2K4M_A.

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=88.53  E-value=1.9  Score=36.67  Aligned_cols=84  Identities=21%  Similarity=0.171  Sum_probs=52.2

Q ss_pred             eEEEEcCCc--chhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccccccC
Q 024647           36 LAWDVGTGS--GQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF  113 (265)
Q Consensus        36 ~vlDvGcG~--G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~  113 (265)
                      +|.=||+|.  |.++..|.+.+.+|+++|.++..++.+.....+....       .+.+.    -...|+|+.+....  
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~-------~~~~~----~~~aDlVilavp~~--   68 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEAS-------TDLSL----LKDCDLVILALPIG--   68 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCccccc-------CCHhH----hcCCCEEEEcCCHH--
Confidence            466788886  4667777777789999999999888876532221111       11111    13579999764321  


Q ss_pred             ChhHHHHHHHHHhcCCCcEE
Q 024647          114 DLPQFYNQVKWVLKKPNGVI  133 (265)
Q Consensus       114 ~~~~~l~~~~~~Lk~pgG~l  133 (265)
                      ...++++++...++ ++..+
T Consensus        69 ~~~~~~~~l~~~l~-~~~ii   87 (279)
T PRK07417         69 LLLPPSEQLIPALP-PEAIV   87 (279)
T ss_pred             HHHHHHHHHHHhCC-CCcEE
Confidence            12346677777777 66444

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=88.28  E-value=7.6  Score=33.68  Aligned_cols=97  Identities=15%  Similarity=0.111  Sum_probs=61.2

Q ss_pred             CCCCeEEEEcC--CcchhHHHHHhc-CCcEEEEcCCHHHHHHHHc-CCCceEEecC-CccchhhhhhccCCCCceeEEEe
Q 024647           32 TNHELAWDVGT--GSGQAAASLSGI-FENVIGTETSPKQIEFATK-LPNIRYELTS-PAMSIAELEQNVAAQSTVDLVTI  106 (265)
Q Consensus        32 ~~~~~vlDvGc--G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~-~~~~~~d~~~~~~~~~~~Dlv~~  106 (265)
                      .++++||-.|+  |.|..+..+++. +.+|++++.++...+.+++ +.--...... .......+.... . +.+|+|+-
T Consensus       150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~-~-~gvd~v~d  227 (338)
T cd08295         150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYF-P-NGIDIYFD  227 (338)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhC-C-CCcEEEEE
Confidence            56788998887  347777777764 5689999999988888775 3221222211 000011122221 2 56899986


Q ss_pred             ccccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647          107 AQAMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       107 ~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      ...      ...+.++.+.|+ ++|+++...
T Consensus       228 ~~g------~~~~~~~~~~l~-~~G~iv~~G  251 (338)
T cd08295         228 NVG------GKMLDAVLLNMN-LHGRIAACG  251 (338)
T ss_pred             CCC------HHHHHHHHHHhc-cCcEEEEec
Confidence            422      257888999999 999998754

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=88.22  E-value=2.7  Score=36.33  Aligned_cols=94  Identities=18%  Similarity=0.162  Sum_probs=66.3

Q ss_pred             CCCeEEEEcCCc-chhHHHHHh-cCCcEEEEcCCHHHHHHHHcC--CCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           33 NHELAWDVGTGS-GQAAASLSG-IFENVIGTETSPKQIEFATKL--PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~--~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      ++.+|.-+|.|. |.-+..++- .+++|+.+|.|..-+.+....  ..+.....+.    ..++..   -...|+++..-
T Consensus       167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~----~~iee~---v~~aDlvIgaV  239 (371)
T COG0686         167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTP----SNIEEA---VKKADLVIGAV  239 (371)
T ss_pred             CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCH----HHHHHH---hhhccEEEEEE
Confidence            346688899886 766666654 578999999999988888763  2344444333    333332   24689999876


Q ss_pred             ccccC-ChhHHHHHHHHHhcCCCcEEE
Q 024647          109 AMHWF-DLPQFYNQVKWVLKKPNGVIA  134 (265)
Q Consensus       109 ~~~~~-~~~~~l~~~~~~Lk~pgG~l~  134 (265)
                      .+.=- +|.-+.+++...+| ||+.++
T Consensus       240 LIpgakaPkLvt~e~vk~Mk-pGsViv  265 (371)
T COG0686         240 LIPGAKAPKLVTREMVKQMK-PGSVIV  265 (371)
T ss_pred             EecCCCCceehhHHHHHhcC-CCcEEE
Confidence            55544 56678999999999 899887

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=88.19  E-value=0.46  Score=42.36  Aligned_cols=93  Identities=15%  Similarity=0.241  Sum_probs=62.0

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC------C--CceEEecCCccchhhhhhcc-CCCCc
Q 024647           33 NHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL------P--NIRYELTSPAMSIAELEQNV-AAQST  100 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~------~--~~~~~~~~~~~~~~d~~~~~-~~~~~  100 (265)
                      .+-++||.=+|+|.=+...+...   .+|++-|+|+..++..++.      .  .+....       .|+..+- .....
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~-------~DAn~ll~~~~~~  121 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSN-------MDANVLLYSRQER  121 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEE-------S-HHHHHCHSTT-
T ss_pred             CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEeh-------hhHHHHhhhcccc
Confidence            34589999999998888887663   4699999999999987752      1  133333       4554432 25678


Q ss_pred             eeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEe
Q 024647          101 VDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       101 ~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      ||+|=..-    + .+..+++.+.+.++ .||.|.+..
T Consensus       122 fD~IDlDP----fGSp~pfldsA~~~v~-~gGll~vTa  154 (377)
T PF02005_consen  122 FDVIDLDP----FGSPAPFLDSALQAVK-DGGLLCVTA  154 (377)
T ss_dssp             EEEEEE------SS--HHHHHHHHHHEE-EEEEEEEEE
T ss_pred             CCEEEeCC----CCCccHhHHHHHHHhh-cCCEEEEec
Confidence            99987541    2 45689999999999 899988743

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=87.93  E-value=1.2  Score=42.85  Aligned_cols=106  Identities=15%  Similarity=0.213  Sum_probs=59.9

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcC-------C-------cEEEEcCCH---HHHHHHHc-------------------CC
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIF-------E-------NVIGTETSP---KQIEFATK-------------------LP   75 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~-------~-------~v~~vD~s~---~~~~~a~~-------------------~~   75 (265)
                      .+.-+|+|+|=|+|.......+..       +       +++++|..|   +.+..+..                   .+
T Consensus        56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  135 (662)
T PRK01747         56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP  135 (662)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence            344789999999997666544221       1       588999644   32322211                   01


Q ss_pred             Cc---eEEec--CCccchhhhhhc-cCCCCceeEEEeccccccCCh----hHHHHHHHHHhcCCCcEEEEEec
Q 024647           76 NI---RYELT--SPAMSIAELEQN-VAAQSTVDLVTIAQAMHWFDL----PQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        76 ~~---~~~~~--~~~~~~~d~~~~-~~~~~~~Dlv~~~~~~~~~~~----~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      +.   .+...  ...+..+|+.+. +.-...+|+++...--.--+|    +.+++++.++++ |||+++.++.
T Consensus       136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~-~~~~~~t~t~  207 (662)
T PRK01747        136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLAR-PGATLATFTS  207 (662)
T ss_pred             CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhC-CCCEEEEeeh
Confidence            11   11111  122334665443 212246888886532111122    479999999999 9999997654

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=87.93  E-value=1.1  Score=38.95  Aligned_cols=65  Identities=11%  Similarity=0.057  Sum_probs=45.9

Q ss_pred             EEEEcCCcchhHHHHHhcCCc-EEEEcCCHHHHHHHHc-CCCceEEecCCccchhhhhhccC-CCCceeEEEeccc
Q 024647           37 AWDVGTGSGQAAASLSGIFEN-VIGTETSPKQIEFATK-LPNIRYELTSPAMSIAELEQNVA-AQSTVDLVTIAQA  109 (265)
Q Consensus        37 vlDvGcG~G~~~~~l~~~~~~-v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~~-~~~~~Dlv~~~~~  109 (265)
                      |+|+-||.|.++..+.+.+.+ +.++|+++..++.-+. .++ ....       +|+.++.. .-..+|+++....
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~-~~~~-------~Di~~~~~~~~~~~dvl~gg~P   68 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN-KVPF-------GDITKISPSDIPDFDILLGGFP   68 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC-CCCc-------cChhhhhhhhCCCcCEEEecCC
Confidence            589999999999999988877 5689999999887664 333 2233       44444431 1225899998653

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG4017 Uncharacterized protein conserved in archaea [Function unknown]

Probab=87.56  E-value=3.7  Score=32.87  Aligned_cols=89  Identities=13%  Similarity=0.075  Sum_probs=64.4

Q ss_pred             CCCCeEEEEcCC-cchhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecccc
Q 024647           32 TNHELAWDVGTG-SGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAM  110 (265)
Q Consensus        32 ~~~~~vlDvGcG-~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~  110 (265)
                      ..+..+|-+|.= +|.++..+...-.+|+.+|+.|.|.....  +++.|...           +..+.+.+|+|+--..+
T Consensus        43 ~E~~~vli~G~YltG~~~a~~Ls~~~~vtv~Di~p~~r~~lp--~~v~Fr~~-----------~~~~~G~~DlivDlTGl  109 (254)
T COG4017          43 EEFKEVLIFGVYLTGNYTAQMLSKADKVTVVDIHPFMRGFLP--NNVKFRNL-----------LKFIRGEVDLIVDLTGL  109 (254)
T ss_pred             cCcceEEEEEeeehhHHHHHHhcccceEEEecCCHHHHhcCC--CCccHhhh-----------cCCCCCceeEEEecccc
Confidence            456789999886 69999998888889999999999977776  67777652           33567889999987665


Q ss_pred             ccCChhHHHHHHHHHhcCCCcEEEEEecCC
Q 024647          111 HWFDLPQFYNQVKWVLKKPNGVIATWCYTV  140 (265)
Q Consensus       111 ~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~~  140 (265)
                      -=..|+     ..+-+. | +.|++.++..
T Consensus       110 GG~~Pe-----~L~~fn-p-~vfiVEdP~g  132 (254)
T COG4017         110 GGIEPE-----FLAKFN-P-KVFIVEDPKG  132 (254)
T ss_pred             CCCCHH-----HHhccC-C-ceEEEECCCC
Confidence            544443     334455 3 5666666653

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=87.48  E-value=1.3  Score=37.35  Aligned_cols=45  Identities=9%  Similarity=0.199  Sum_probs=33.9

Q ss_pred             HHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcC-------CcEEEEcCCHH
Q 024647           22 ELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIF-------ENVIGTETSPK   66 (265)
Q Consensus        22 ~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~-------~~v~~vD~s~~   66 (265)
                      .++..+....  .++..++|.|||.|.++..+++..       ..++.||-...
T Consensus         5 Sli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~   58 (259)
T PF05206_consen    5 SLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASN   58 (259)
T ss_pred             HHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcc
Confidence            4555555442  466789999999999999998754       36899998554

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=87.43  E-value=9.6  Score=32.96  Aligned_cols=99  Identities=19%  Similarity=0.178  Sum_probs=59.2

Q ss_pred             CCCCeEEEEcCC-cchhHHHHHhc-CCc-EEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           32 TNHELAWDVGTG-SGQAAASLSGI-FEN-VIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        32 ~~~~~vlDvGcG-~G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      .++.+||-.|+| .|..+..+++. +.+ +++++.++...+.++......+....-......+... .....+|+|+...
T Consensus       164 ~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~-~~~~~vd~vld~~  242 (343)
T cd08235         164 KPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADYTIDAAEEDLVEKVREL-TDGRGADVVIVAT  242 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEecCCccCHHHHHHHH-hCCcCCCEEEECC
Confidence            456778777876 36666666654 557 8899999988887765322122211110000112222 2344589988532


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                           .....+..+.+.|+ ++|+++...
T Consensus       243 -----~~~~~~~~~~~~l~-~~g~~v~~~  265 (343)
T cd08235         243 -----GSPEAQAQALELVR-KGGRILFFG  265 (343)
T ss_pred             -----CChHHHHHHHHHhh-cCCEEEEEe
Confidence                 22357888899999 899998654

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=87.28  E-value=0.49  Score=40.88  Aligned_cols=66  Identities=18%  Similarity=0.153  Sum_probs=45.2

Q ss_pred             eEEEEcCCcchhHHHHHhcCCc-EEEEcCCHHHHHHHHc-CCCceEEecCCccchhhhhhcc---CCCCceeEEEecccc
Q 024647           36 LAWDVGTGSGQAAASLSGIFEN-VIGTETSPKQIEFATK-LPNIRYELTSPAMSIAELEQNV---AAQSTVDLVTIAQAM  110 (265)
Q Consensus        36 ~vlDvGcG~G~~~~~l~~~~~~-v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~---~~~~~~Dlv~~~~~~  110 (265)
                      +++|+=||-|.++..+.+.+.+ +.++|+++..++.-+. .+  ....       +|+.++.   ++. .+|+++....+
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--~~~~-------~Di~~~~~~~l~~-~~D~l~ggpPC   71 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--EVIC-------GDITEIDPSDLPK-DVDLLIGGPPC   71 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--EEEE-------SHGGGCHHHHHHH-T-SEEEEE---
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--cccc-------ccccccccccccc-cceEEEeccCC
Confidence            6899999999999999998864 7899999999887664 23  4455       3433332   333 59999987644


Q ss_pred             c
Q 024647          111 H  111 (265)
Q Consensus       111 ~  111 (265)
                      .
T Consensus        72 Q   72 (335)
T PF00145_consen   72 Q   72 (335)
T ss_dssp             T
T ss_pred             c
Confidence            3

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>TIGR00936 ahcY adenosylhomocysteinase

Probab=87.08  E-value=5.9  Score=35.72  Aligned_cols=91  Identities=19%  Similarity=0.093  Sum_probs=58.2

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHh-cCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647           32 TNHELAWDVGTGS-GQAAASLSG-IFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA  109 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~  109 (265)
                      ..+++|+-+|+|. |......++ .+.+|+++|.++.....+.. .+....  +       +++. .  ...|+|+... 
T Consensus       193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~-~G~~v~--~-------leea-l--~~aDVVItaT-  258 (406)
T TIGR00936       193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAM-DGFRVM--T-------MEEA-A--KIGDIFITAT-  258 (406)
T ss_pred             CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHh-cCCEeC--C-------HHHH-H--hcCCEEEECC-
Confidence            4678999999997 655555554 46789999999876555553 232221  1       1222 1  2469988753 


Q ss_pred             cccCChhHHHH-HHHHHhcCCCcEEEEEecCCC
Q 024647          110 MHWFDLPQFYN-QVKWVLKKPNGVIATWCYTVP  141 (265)
Q Consensus       110 ~~~~~~~~~l~-~~~~~Lk~pgG~l~~~~~~~~  141 (265)
                          .....+. +....+| +|++++.....+.
T Consensus       259 ----G~~~vI~~~~~~~mK-~GailiN~G~~~~  286 (406)
T TIGR00936       259 ----GNKDVIRGEHFENMK-DGAIVANIGHFDV  286 (406)
T ss_pred             ----CCHHHHHHHHHhcCC-CCcEEEEECCCCc
Confidence                2345555 4788899 8999887665543

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=86.91  E-value=11  Score=32.63  Aligned_cols=98  Identities=13%  Similarity=0.110  Sum_probs=59.0

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CCc-EEEEcCCHHHHHHHHcCCCceEEecCCc-cchhhhhhccCCCCceeEEEec
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FEN-VIGTETSPKQIEFATKLPNIRYELTSPA-MSIAELEQNVAAQSTVDLVTIA  107 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~Dlv~~~  107 (265)
                      .++.+||=.|||. |..+..+++. +.+ +++++.++.-.+.+++.. +......-. .....+... .+...+|+++..
T Consensus       167 ~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g-a~~v~~~~~~~~~~~i~~~-~~~~~~d~il~~  244 (345)
T cd08287         167 RPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFG-ATDIVAERGEEAVARVREL-TGGVGADAVLEC  244 (345)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcC-CceEecCCcccHHHHHHHh-cCCCCCCEEEEC
Confidence            4556666688875 6666667665 444 899999887777666542 222111100 000122222 234468888854


Q ss_pred             cccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647          108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                           ......+..+.+.|+ ++|.++...
T Consensus       245 -----~g~~~~~~~~~~~l~-~~g~~v~~g  268 (345)
T cd08287         245 -----VGTQESMEQAIAIAR-PGGRVGYVG  268 (345)
T ss_pred             -----CCCHHHHHHHHHhhc-cCCEEEEec
Confidence                 223568899999999 999988654

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=86.88  E-value=13  Score=31.48  Aligned_cols=100  Identities=14%  Similarity=0.163  Sum_probs=58.4

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CCc-EEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FEN-VIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      .++.+||-.|+|. |..+..+++. +.+ ++++..+++..+.+++..-..............+..+ .+...+|+++.. 
T Consensus       128 ~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~-~~~~~vd~vld~-  205 (312)
T cd08269         128 RAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDSEAIVERVREL-TGGAGADVVIEA-  205 (312)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEecCCCcCHHHHHHHH-cCCCCCCEEEEC-
Confidence            4567777777643 5555555554 557 9999988887776665321111211110001122222 234568999864 


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                          ......+..+.+.|+ ++|.++....
T Consensus       206 ----~g~~~~~~~~~~~l~-~~g~~~~~g~  230 (312)
T cd08269         206 ----VGHQWPLDLAGELVA-ERGRLVIFGY  230 (312)
T ss_pred             ----CCCHHHHHHHHHHhc-cCCEEEEEcc
Confidence                222457888899999 9999987554

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=86.67  E-value=4  Score=36.51  Aligned_cols=69  Identities=22%  Similarity=0.185  Sum_probs=44.7

Q ss_pred             CeEEEEcCCc-chhHHH-HHhcC-CcEEEEcCCHHHHHHHHcC--CCceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647           35 ELAWDVGTGS-GQAAAS-LSGIF-ENVIGTETSPKQIEFATKL--PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIA  107 (265)
Q Consensus        35 ~~vlDvGcG~-G~~~~~-l~~~~-~~v~~vD~s~~~~~~a~~~--~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~  107 (265)
                      ++||-||||. |..... |++++ .+|+..|.|.+.++.+...  .+++..+.++    .|.+.+..--..+|+|+..
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~----~d~~al~~li~~~d~VIn~   75 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDA----ADVDALVALIKDFDLVINA   75 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecc----cChHHHHHHHhcCCEEEEe
Confidence            4689999975 544444 35556 6899999999988887653  4677777665    3332221111235888864

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=86.58  E-value=9.6  Score=33.06  Aligned_cols=99  Identities=16%  Similarity=0.140  Sum_probs=60.0

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCC-ccchhhhhhccCCCCceeEEEecc
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSP-AMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      .++.+||-.|||. |..+..+++. +.++++++.+++..+.+++..-..+..... ......+..+ ..+ .+|+++.. 
T Consensus       164 ~~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~-~~~-~~d~vi~~-  240 (345)
T cd08260         164 KPGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELARELGAVATVNASEVEDVAAAVRDL-TGG-GAHVSVDA-  240 (345)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhCCCEEEccccchhHHHHHHHH-hCC-CCCEEEEc-
Confidence            4567888888754 5666666654 558999999998888876532112222110 0000112222 123 69998864 


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                          ......+..+.+.|+ ++|.++....
T Consensus       241 ----~g~~~~~~~~~~~l~-~~g~~i~~g~  265 (345)
T cd08260         241 ----LGIPETCRNSVASLR-KRGRHVQVGL  265 (345)
T ss_pred             ----CCCHHHHHHHHHHhh-cCCEEEEeCC
Confidence                222457888999999 9999886543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=86.39  E-value=11  Score=32.47  Aligned_cols=97  Identities=11%  Similarity=0.145  Sum_probs=59.8

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc--CCcEEEEcCCHHHHHHHHcCCCceEEecCCc--cchhhhhhccCCCCceeEEEe
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI--FENVIGTETSPKQIEFATKLPNIRYELTSPA--MSIAELEQNVAAQSTVDLVTI  106 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~--~~~~d~~~~~~~~~~~Dlv~~  106 (265)
                      .++.+||-.|||. |..+..+++.  +.++++++.+++..+.+++.. +........  .....+...  . +.+|.++.
T Consensus       161 ~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~g-~~~v~~~~~~~~~~~~v~~~--~-~~~d~vi~  236 (338)
T PRK09422        161 KPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEVG-ADLTINSKRVEDVAKIIQEK--T-GGAHAAVV  236 (338)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHcC-CcEEecccccccHHHHHHHh--c-CCCcEEEE
Confidence            5667888889764 6777777773  678999999999999887643 222221100  000111112  1 24774443


Q ss_pred             ccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          107 AQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       107 ~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      ..    . ....+..+.+.|+ ++|.++....
T Consensus       237 ~~----~-~~~~~~~~~~~l~-~~G~~v~~g~  262 (338)
T PRK09422        237 TA----V-AKAAFNQAVDAVR-AGGRVVAVGL  262 (338)
T ss_pred             eC----C-CHHHHHHHHHhcc-CCCEEEEEee
Confidence            21    1 2457899999999 9999987543

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=86.28  E-value=5.9  Score=35.97  Aligned_cols=91  Identities=21%  Similarity=0.152  Sum_probs=58.0

Q ss_pred             CCCeEEEEcCCc-chhHHHHH-hcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecccc
Q 024647           33 NHELAWDVGTGS-GQAAASLS-GIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAM  110 (265)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~  110 (265)
                      .+.+|+-+|+|. |......+ ..+.+|+.+|+++.....+... +....         ++++. .  ..+|+|+...  
T Consensus       211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~-G~~v~---------~l~ea-l--~~aDVVI~aT--  275 (425)
T PRK05476        211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMD-GFRVM---------TMEEA-A--ELGDIFVTAT--  275 (425)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhc-CCEec---------CHHHH-H--hCCCEEEECC--
Confidence            678899999996 54444433 4567899999998876555432 22211         12222 1  2589998753  


Q ss_pred             ccCChhHHHH-HHHHHhcCCCcEEEEEecCCCC
Q 024647          111 HWFDLPQFYN-QVKWVLKKPNGVIATWCYTVPE  142 (265)
Q Consensus       111 ~~~~~~~~l~-~~~~~Lk~pgG~l~~~~~~~~~  142 (265)
                         .....+. +....+| +|++++.....+..
T Consensus       276 ---G~~~vI~~~~~~~mK-~GailiNvG~~d~E  304 (425)
T PRK05476        276 ---GNKDVITAEHMEAMK-DGAILANIGHFDNE  304 (425)
T ss_pred             ---CCHHHHHHHHHhcCC-CCCEEEEcCCCCCc
Confidence               2234554 6888999 89988876655443

>TIGR00518 alaDH alanine dehydrogenase

Probab=86.20  E-value=2.6  Score=37.56  Aligned_cols=99  Identities=17%  Similarity=0.085  Sum_probs=55.2

Q ss_pred             CCCeEEEEcCCc-chhHHHHHh-cCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecccc
Q 024647           33 NHELAWDVGTGS-GQAAASLSG-IFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAM  110 (265)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~  110 (265)
                      ++.+|+-+|+|. |..+...+. .+.+|+.+|.++.-++.+...-+..+.. ... ...++.+.   -..+|+|+....+
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~-~~~-~~~~l~~~---l~~aDvVI~a~~~  240 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHT-RYS-NAYEIEDA---VKRADLLIGAVLI  240 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEe-ccC-CHHHHHHH---HccCCEEEEcccc
Confidence            346699999985 666665554 4668999999988777654321111111 000 00222222   1358999975322


Q ss_pred             ccCC-hhHHHHHHHHHhcCCCcEEEEEe
Q 024647          111 HWFD-LPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       111 ~~~~-~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      .-.. +.-+-+++.+.++ |+++++-..
T Consensus       241 ~g~~~p~lit~~~l~~mk-~g~vIvDva  267 (370)
T TIGR00518       241 PGAKAPKLVSNSLVAQMK-PGAVIVDVA  267 (370)
T ss_pred             CCCCCCcCcCHHHHhcCC-CCCEEEEEe
Confidence            1111 2223466777789 898877433

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=86.13  E-value=3.9  Score=34.45  Aligned_cols=89  Identities=13%  Similarity=0.034  Sum_probs=61.3

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccccc
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMH  111 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~  111 (265)
                      .+++..+|+|+-+|..|..|.++.-.|++||-.+ |.+.......+....       +|--++.......|-.+|..+- 
T Consensus       210 ~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng~-ma~sL~dtg~v~h~r-------~DGfk~~P~r~~idWmVCDmVE-  280 (358)
T COG2933         210 APGMWAVDLGACPGGWTYQLVKRNMRVYAVDNGP-MAQSLMDTGQVTHLR-------EDGFKFRPTRSNIDWMVCDMVE-  280 (358)
T ss_pred             cCCceeeecccCCCccchhhhhcceEEEEeccch-hhhhhhcccceeeee-------ccCcccccCCCCCceEEeehhc-
Confidence            4678999999999999999999999999999755 444444334555554       3333333234568888876321 


Q ss_pred             cCChhHHHHHHHHHhcCCCcEE
Q 024647          112 WFDLPQFYNQVKWVLKKPNGVI  133 (265)
Q Consensus       112 ~~~~~~~l~~~~~~Lk~pgG~l  133 (265)
                        .|.++...+...|.  +|+.
T Consensus       281 --kP~rv~~li~~Wl~--nGwC  298 (358)
T COG2933         281 --KPARVAALIAKWLV--NGWC  298 (358)
T ss_pred             --CcHHHHHHHHHHHH--cchH
Confidence              45567777788887  5543

>PRK10458 DNA cytosine methylase; Provisional

Probab=85.80  E-value=5.1  Score=36.88  Aligned_cols=39  Identities=15%  Similarity=0.053  Sum_probs=33.2

Q ss_pred             CCeEEEEcCCcchhHHHHHhcCCc-EEEEcCCHHHHHHHH
Q 024647           34 HELAWDVGTGSGQAAASLSGIFEN-VIGTETSPKQIEFAT   72 (265)
Q Consensus        34 ~~~vlDvGcG~G~~~~~l~~~~~~-v~~vD~s~~~~~~a~   72 (265)
                      ..+++|+=||.|.+...+...+.+ |.++|+++...+.-+
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~  127 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYK  127 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHH
Confidence            358999999999999999888765 678999999887654

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=85.78  E-value=3.4  Score=34.03  Aligned_cols=71  Identities=18%  Similarity=0.113  Sum_probs=46.1

Q ss_pred             CeEEEEcCCc--chhHHHHHhcCCcEEEEcCCHHHHHHHHc-CCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           35 ELAWDVGTGS--GQAAASLSGIFENVIGTETSPKQIEFATK-LPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        35 ~~vlDvGcG~--G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      +.++=+|||.  +.++..|.+.+.+|+.+|.+++.++.... ......+.+++... .-+++.  .-..+|++++..
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~-~~L~~a--gi~~aD~vva~t   74 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDE-DVLEEA--GIDDADAVVAAT   74 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCH-HHHHhc--CCCcCCEEEEee
Confidence            3577889986  35566677788899999999999887332 23556666554211 113333  335689998853

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=85.69  E-value=15  Score=30.89  Aligned_cols=98  Identities=15%  Similarity=0.142  Sum_probs=60.0

Q ss_pred             CCCCeEEEEcC-C-cchhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCc-cchhhhhhccCCCCceeEEEec
Q 024647           32 TNHELAWDVGT-G-SGQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPA-MSIAELEQNVAAQSTVDLVTIA  107 (265)
Q Consensus        32 ~~~~~vlDvGc-G-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~Dlv~~~  107 (265)
                      .++.+||=.|+ | .|..+..+++. +.++++++.++...+.+++.. +........ .....+..+ .....+|+++..
T Consensus       135 ~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~-~~~~~~d~vl~~  212 (320)
T cd05286         135 KPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELARAAG-ADHVINYRDEDFVERVREI-TGGRGVDVVYDG  212 (320)
T ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHCC-CCEEEeCCchhHHHHHHHH-cCCCCeeEEEEC
Confidence            45678888884 3 46666666654 568999999998888876542 222211110 000112222 234569999864


Q ss_pred             cccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      ..      ...+..+.+.|+ ++|.++....
T Consensus       213 ~~------~~~~~~~~~~l~-~~g~~v~~g~  236 (320)
T cd05286         213 VG------KDTFEGSLDSLR-PRGTLVSFGN  236 (320)
T ss_pred             CC------cHhHHHHHHhhc-cCcEEEEEec
Confidence            22      246778889999 8999886543

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=85.67  E-value=18  Score=29.58  Aligned_cols=104  Identities=14%  Similarity=0.195  Sum_probs=56.5

Q ss_pred             cHHHHHHHHhhCCCCCeEEEEcCCcc--hhHHHHH----hcCCcEEEEcCCHHHHHHHHc-C------CCceEEecCCcc
Q 024647           20 PEELFKFITSKTTNHELAWDVGTGSG--QAAASLS----GIFENVIGTETSPKQIEFATK-L------PNIRYELTSPAM   86 (265)
Q Consensus        20 ~~~l~~~l~~~~~~~~~vlDvGcG~G--~~~~~l~----~~~~~v~~vD~s~~~~~~a~~-~------~~~~~~~~~~~~   86 (265)
                      ..+++..|... ...+.++++.|+-|  ..|..|+    +-+.++++|-+++.-+...++ .      .-++|+.+..  
T Consensus        29 ~aEfISAlAAG-~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~--  105 (218)
T PF07279_consen   29 VAEFISALAAG-WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEA--  105 (218)
T ss_pred             HHHHHHHHhcc-ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCC--
Confidence            44555555543 34467899976644  3455554    236789999998776554433 1      1245555321  


Q ss_pred             chhhhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcC-CCcEEEE
Q 024647           87 SIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKK-PNGVIAT  135 (265)
Q Consensus        87 ~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~-pgG~l~~  135 (265)
                          .+.+-..-..+|.++..     .....+..++.++++. |.|.+++
T Consensus       106 ----~e~~~~~~~~iDF~vVD-----c~~~d~~~~vl~~~~~~~~GaVVV  146 (218)
T PF07279_consen  106 ----PEEVMPGLKGIDFVVVD-----CKREDFAARVLRAAKLSPRGAVVV  146 (218)
T ss_pred             ----HHHHHhhccCCCEEEEe-----CCchhHHHHHHHHhccCCCceEEE
Confidence                23322223468888865     2344455455555541 4566554

The function of this family is unknown.

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=85.62  E-value=12  Score=33.02  Aligned_cols=100  Identities=13%  Similarity=0.011  Sum_probs=58.4

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CCc-EEEEcCCHHHHHHHHcCCCceEEecCCc--cchhhhhhccCCCCceeEEEe
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FEN-VIGTETSPKQIEFATKLPNIRYELTSPA--MSIAELEQNVAAQSTVDLVTI  106 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~--~~~~d~~~~~~~~~~~Dlv~~  106 (265)
                      .++.+||=.|+|. |..+..+++. +.+ |++++.++...+.++++.-..++...-.  .....+..+. . +.+|+|+.
T Consensus       182 ~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~l~~~~-~-~~~d~vid  259 (365)
T cd05279         182 TPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINPRDQDKPIVEVLTEMT-D-GGVDYAFE  259 (365)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCeecccccccchHHHHHHHHh-C-CCCcEEEE
Confidence            4567787788764 6666666664 444 8899999988888765432122211110  0001122222 2 56899986


Q ss_pred             ccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          107 AQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       107 ~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      ..     .....+..+.+.|++++|+++....
T Consensus       260 ~~-----g~~~~~~~~~~~l~~~~G~~v~~g~  286 (365)
T cd05279         260 VI-----GSADTLKQALDATRLGGGTSVVVGV  286 (365)
T ss_pred             CC-----CCHHHHHHHHHHhccCCCEEEEEec
Confidence            42     1235677778888636898886543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=85.55  E-value=8.4  Score=36.33  Aligned_cols=94  Identities=16%  Similarity=0.066  Sum_probs=57.6

Q ss_pred             CeEEEEcCCc-ch-hHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecccccc
Q 024647           35 ELAWDVGTGS-GQ-AAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHW  112 (265)
Q Consensus        35 ~~vlDvGcG~-G~-~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~  112 (265)
                      ++++=+|||. |. .++.|.+++.+++.+|.+++.++.+++ .+.....+++... .-+++.  .-+.+|.+++...   
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~-~g~~~i~GD~~~~-~~L~~a--~i~~a~~viv~~~---  490 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE-RGIRAVLGNAANE-EIMQLA--HLDCARWLLLTIP---  490 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-CCCeEEEcCCCCH-HHHHhc--CccccCEEEEEcC---
Confidence            6788888886 43 333445567789999999999999986 4677778665211 112222  2346887765421   


Q ss_pred             CChh--HHHHHHHHHhcCCCcEEEEEe
Q 024647          113 FDLP--QFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       113 ~~~~--~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                       |..  ..+-.+.+.+. |+..++.-.
T Consensus       491 -~~~~~~~iv~~~~~~~-~~~~iiar~  515 (558)
T PRK10669        491 -NGYEAGEIVASAREKR-PDIEIIARA  515 (558)
T ss_pred             -ChHHHHHHHHHHHHHC-CCCeEEEEE
Confidence             222  22444456667 777666533

>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []

Probab=85.29  E-value=6.1  Score=35.25  Aligned_cols=120  Identities=13%  Similarity=0.120  Sum_probs=62.8

Q ss_pred             CCCeEEEEcCCcchh----HHHHHhcC--C---cEEEEcC----CHHHHHHHHc-------CCCceEEecCC---ccchh
Q 024647           33 NHELAWDVGTGSGQA----AASLSGIF--E---NVIGTET----SPKQIEFATK-------LPNIRYELTSP---AMSIA   89 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~----~~~l~~~~--~---~v~~vD~----s~~~~~~a~~-------~~~~~~~~~~~---~~~~~   89 (265)
                      +.-+|+|+|.|.|.-    -..|+.+-  +   +||||+.    +..-++...+       .-++.|.-..+   .+..-
T Consensus       110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l  189 (374)
T PF03514_consen  110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDL  189 (374)
T ss_pred             cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhC
Confidence            346899999999843    33344432  2   5999999    6666655432       12455544331   11111


Q ss_pred             hhhhccCCCCceeEEEeccccccC-C-------hhHHHHHHHHHhcCCCcEEEEEec---CCCCCChHHHHhhcc
Q 024647           90 ELEQNVAAQSTVDLVTIAQAMHWF-D-------LPQFYNQVKWVLKKPNGVIATWCY---TVPEVNVSVDAVFQP  153 (265)
Q Consensus        90 d~~~~~~~~~~~Dlv~~~~~~~~~-~-------~~~~l~~~~~~Lk~pgG~l~~~~~---~~~~~~~~~~~~~~~  153 (265)
                      +...+...++.+=+|-+.+.+|.+ +       +.+.+=...+.|+ |.-.+++..-   +.+.+...+.+.++.
T Consensus       190 ~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~-P~vvv~~E~ea~~n~~~F~~RF~eal~y  263 (374)
T PF03514_consen  190 DPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLN-PKVVVLVEQEADHNSPSFLERFREALHY  263 (374)
T ss_pred             CHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcC-CCEEEEEeecCCCCCCchHHHHHHHHHH
Confidence            122233344555555566678877 2       2223445566788 8865555222   234444555554443

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=84.87  E-value=14  Score=31.96  Aligned_cols=100  Identities=17%  Similarity=0.167  Sum_probs=58.5

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      .++.+||=.|+|. |..+..+++. +. ++++++.++.-...++++. +.............+... .+.+.+|+++.. 
T Consensus       166 ~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~l~~~-~~~~~~dvvid~-  242 (344)
T cd08284         166 RPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALG-AEPINFEDAEPVERVREA-TEGRGADVVLEA-  242 (344)
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhC-CeEEecCCcCHHHHHHHH-hCCCCCCEEEEC-
Confidence            4567777777653 5555555554 43 6999988887777766543 221211110000112222 234568998864 


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                          ..-...+.++.+.|+ ++|+++.....
T Consensus       243 ----~~~~~~~~~~~~~l~-~~g~~v~~g~~  268 (344)
T cd08284         243 ----VGGAAALDLAFDLVR-PGGVISSVGVH  268 (344)
T ss_pred             ----CCCHHHHHHHHHhcc-cCCEEEEECcC
Confidence                222357888999999 99998875543

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=84.84  E-value=2.8  Score=30.13  Aligned_cols=88  Identities=16%  Similarity=0.172  Sum_probs=53.0

Q ss_pred             CCcchhHHHHHhc---CC-cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccccccCChh-
Q 024647           42 TGSGQAAASLSGI---FE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLP-  116 (265)
Q Consensus        42 cG~G~~~~~l~~~---~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~-  116 (265)
                      ||.|.++..+++.   .. +|+.+|.++..++.++. .++.+..+++.-. ..++..  .-...|.|++...    +.. 
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~-~~~~~i~gd~~~~-~~l~~a--~i~~a~~vv~~~~----~d~~   75 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE-EGVEVIYGDATDP-EVLERA--GIEKADAVVILTD----DDEE   75 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH-TTSEEEES-TTSH-HHHHHT--TGGCESEEEEESS----SHHH
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh-cccccccccchhh-hHHhhc--CccccCEEEEccC----CHHH
Confidence            5556677766543   33 79999999999998886 3477888665211 112223  3346888887532    222 


Q ss_pred             -HHHHHHHHHhcCCCcEEEEEec
Q 024647          117 -QFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       117 -~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                       ..+....+-+. |...++....
T Consensus        76 n~~~~~~~r~~~-~~~~ii~~~~   97 (116)
T PF02254_consen   76 NLLIALLARELN-PDIRIIARVN   97 (116)
T ss_dssp             HHHHHHHHHHHT-TTSEEEEEES
T ss_pred             HHHHHHHHHHHC-CCCeEEEEEC
Confidence             24445566677 7777776443

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=84.61  E-value=2.7  Score=37.58  Aligned_cols=59  Identities=15%  Similarity=0.350  Sum_probs=45.2

Q ss_pred             CCceEEecCCccchhhhhhcc--CCCCceeEEEeccccccCChh---HHHHHHHHHhcCCCcEEEEEecCCC
Q 024647           75 PNIRYELTSPAMSIAELEQNV--AAQSTVDLVTIAQAMHWFDLP---QFYNQVKWVLKKPNGVIATWCYTVP  141 (265)
Q Consensus        75 ~~~~~~~~~~~~~~~d~~~~~--~~~~~~Dlv~~~~~~~~~~~~---~~l~~~~~~Lk~pgG~l~~~~~~~~  141 (265)
                      .+++.+.       +++.+..  .+++++|.++.....-|+++.   ..++++.+.++ |||+++++....+
T Consensus       275 drv~i~t-------~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~-pgaRV~~Rsa~~~  338 (380)
T PF11899_consen  275 DRVRIHT-------DSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTAR-PGARVLWRSAAVP  338 (380)
T ss_pred             CeEEEEe-------ccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhC-CCCEEEEeeCCCC
Confidence            4566666       4444321  467899999999999999765   57888999999 9999999887644

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=84.54  E-value=15  Score=31.41  Aligned_cols=96  Identities=11%  Similarity=0.084  Sum_probs=59.1

Q ss_pred             CCCeEEEEcC-C-cchhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647           33 NHELAWDVGT-G-SGQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA  109 (265)
Q Consensus        33 ~~~~vlDvGc-G-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~  109 (265)
                      .+.+||=.|+ | .|..+..+++. +.+|++++.++...+.+++. ++......-......+..+  ....+|+|+....
T Consensus       146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~-g~~~v~~~~~~~~~~~~~~--~~~~~d~vld~~g  222 (326)
T cd08289         146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKKL-GAKEVIPREELQEESIKPL--EKQRWAGAVDPVG  222 (326)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHc-CCCEEEcchhHHHHHHHhh--ccCCcCEEEECCc
Confidence            3467888887 3 36666666654 56899999999888888754 2322221110000112222  2346898875421


Q ss_pred             cccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          110 MHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       110 ~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                            ...+....+.|+ ++|+++....
T Consensus       223 ------~~~~~~~~~~l~-~~G~~i~~g~  244 (326)
T cd08289         223 ------GKTLAYLLSTLQ-YGGSVAVSGL  244 (326)
T ss_pred             ------HHHHHHHHHHhh-cCCEEEEEee
Confidence                  246788899999 9999987654

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=84.40  E-value=2.5  Score=32.04  Aligned_cols=98  Identities=22%  Similarity=0.210  Sum_probs=55.1

Q ss_pred             EEEEcCCc-c-hhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhc---cCCCCceeEEEeccccc
Q 024647           37 AWDVGTGS-G-QAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQN---VAAQSTVDLVTIAQAMH  111 (265)
Q Consensus        37 vlDvGcG~-G-~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~Dlv~~~~~~~  111 (265)
                      |+=+|+|. | .++..|.+.+.+|+.+..++ .++..+. .++.+.....+.........   ....+.+|+|+...  -
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~v--K   76 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKE-QGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAV--K   76 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHH-HCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-S--S
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhh-eeEEEEecccceecccccccCcchhccCCCcEEEEEe--c
Confidence            45678875 4 34444556678899999988 5555443 12222221100000000001   11346799999863  1


Q ss_pred             cCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          112 WFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       112 ~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      ..+....++.+.+.+. ++..+++...+
T Consensus        77 a~~~~~~l~~l~~~~~-~~t~iv~~qNG  103 (151)
T PF02558_consen   77 AYQLEQALQSLKPYLD-PNTTIVSLQNG  103 (151)
T ss_dssp             GGGHHHHHHHHCTGEE-TTEEEEEESSS
T ss_pred             ccchHHHHHHHhhccC-CCcEEEEEeCC
Confidence            2345678999999999 88777765544

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=84.31  E-value=9.6  Score=32.01  Aligned_cols=74  Identities=23%  Similarity=0.322  Sum_probs=45.5

Q ss_pred             hHHHHHhcC--CcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccccccCChhHHHHHHHH
Q 024647           47 AAASLSGIF--ENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKW  124 (265)
Q Consensus        47 ~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~  124 (265)
                      +++.|.+.+  .+|+|+|.++..++.|.+..-+.-..       .+.+..    ..+|+|+.+-.+.  ....+++++..
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~-------~~~~~~----~~~DlvvlavP~~--~~~~~l~~~~~   67 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEAS-------TDIEAV----EDADLVVLAVPVS--AIEDVLEEIAP   67 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEE-------SHHHHG----GCCSEEEE-S-HH--HHHHHHHHHHC
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeecc-------CCHhHh----cCCCEEEEcCCHH--HHHHHHHHhhh
Confidence            356777777  47999999999999997643333222       122222    2469999864321  23468888888


Q ss_pred             HhcCCCcEEE
Q 024647          125 VLKKPNGVIA  134 (265)
Q Consensus       125 ~Lk~pgG~l~  134 (265)
                      .++ +|+++.
T Consensus        68 ~~~-~~~iv~   76 (258)
T PF02153_consen   68 YLK-PGAIVT   76 (258)
T ss_dssp             GS--TTSEEE
T ss_pred             hcC-CCcEEE
Confidence            888 776665

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=84.15  E-value=18  Score=30.52  Aligned_cols=97  Identities=16%  Similarity=0.107  Sum_probs=58.2

Q ss_pred             CCCCeEEEEcCC--cchhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCc-cchhhhhhccCCCCceeEEEec
Q 024647           32 TNHELAWDVGTG--SGQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPA-MSIAELEQNVAAQSTVDLVTIA  107 (265)
Q Consensus        32 ~~~~~vlDvGcG--~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~Dlv~~~  107 (265)
                      .++..|+-.||.  .|..+..+++. +.++++++.++...+.++... +........ .....+... .....+|+++..
T Consensus       138 ~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~i~~~-~~~~~~d~v~~~  215 (323)
T cd08241         138 QPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARALG-ADHVIDYRDPDLRERVKAL-TGGRGVDVVYDP  215 (323)
T ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHHcC-CceeeecCCccHHHHHHHH-cCCCCcEEEEEC
Confidence            466889999982  46666666554 568999999988888776532 221111110 000112222 233468998864


Q ss_pred             cccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647          108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      ..      ...+..+.+.++ ++|.++...
T Consensus       216 ~g------~~~~~~~~~~~~-~~g~~v~~~  238 (323)
T cd08241         216 VG------GDVFEASLRSLA-WGGRLLVIG  238 (323)
T ss_pred             cc------HHHHHHHHHhhc-cCCEEEEEc
Confidence            32      245677888999 899987644

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=84.01  E-value=2  Score=38.14  Aligned_cols=119  Identities=17%  Similarity=0.187  Sum_probs=67.0

Q ss_pred             HHhh-hCCCCcHHHHHHHHhh-----CCCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHc---------
Q 024647           11 QYAE-TRPNYPEELFKFITSK-----TTNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATK---------   73 (265)
Q Consensus        11 ~Y~~-~rp~y~~~l~~~l~~~-----~~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~---------   73 (265)
                      +|.. .-+.|.+...+.+...     .++.+...|+|.|-|+....++..+.  .=+|+++.+..-+.+..         
T Consensus       164 hYk~~ss~~YGE~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~  243 (419)
T KOG3924|consen  164 HYKSFSSETYGETQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLM  243 (419)
T ss_pred             hhccccccchhhhhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHH
Confidence            4554 3346655555555443     36778899999999999999887653  45677665544333221         


Q ss_pred             --C---C-CceEEecCCccchhhhhhccCCCCceeEEEeccccccCChh--HHHHHHHHHhcCCCcEEEEE
Q 024647           74 --L---P-NIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLP--QFYNQVKWVLKKPNGVIATW  136 (265)
Q Consensus        74 --~---~-~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~--~~l~~~~~~Lk~pgG~l~~~  136 (265)
                        .   + .++.+.+  .++..+...  .-....++|+++...  ||++  .-+.++..-++ +|-.++-.
T Consensus       244 k~fGk~~~~~~~i~g--sf~~~~~v~--eI~~eatvi~vNN~~--Fdp~L~lr~~eil~~ck-~gtrIiS~  307 (419)
T KOG3924|consen  244 KHFGKKPNKIETIHG--SFLDPKRVT--EIQTEATVIFVNNVA--FDPELKLRSKEILQKCK-DGTRIISS  307 (419)
T ss_pred             HHhCCCcCceeeccc--ccCCHHHHH--HHhhcceEEEEeccc--CCHHHHHhhHHHHhhCC-CcceEecc
Confidence              0   1 1222221  111111111  123457888888753  3444  34457777788 77777643

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=83.92  E-value=18  Score=31.10  Aligned_cols=89  Identities=13%  Similarity=0.069  Sum_probs=56.6

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHh-cCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647           32 TNHELAWDVGTGS-GQAAASLSG-IFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA  109 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~  109 (265)
                      .++.++|-.|||. |..+..+++ .+.++++++.++...+.+++.. +.....        ....  +...+|+++... 
T Consensus       166 ~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~~g-~~~~~~--------~~~~--~~~~vD~vi~~~-  233 (329)
T cd08298         166 KPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARELG-ADWAGD--------SDDL--PPEPLDAAIIFA-  233 (329)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHhC-CcEEec--------cCcc--CCCcccEEEEcC-
Confidence            4556777788764 555555554 4568999999988888776532 322211        0111  234688877531 


Q ss_pred             cccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647          110 MHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       110 ~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                          .....+.++.+.|+ ++|+++...
T Consensus       234 ----~~~~~~~~~~~~l~-~~G~~v~~g  256 (329)
T cd08298         234 ----PVGALVPAALRAVK-KGGRVVLAG  256 (329)
T ss_pred             ----CcHHHHHHHHHHhh-cCCEEEEEc
Confidence                12357899999999 999998754

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=83.77  E-value=13  Score=32.24  Aligned_cols=100  Identities=13%  Similarity=0.044  Sum_probs=61.4

Q ss_pred             CCCCCeEEEEcCCc-chhHHHHHh-cCC-cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhc--cCCCCceeEEE
Q 024647           31 TTNHELAWDVGTGS-GQAAASLSG-IFE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQN--VAAQSTVDLVT  105 (265)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~Dlv~  105 (265)
                      ..++.++.-.|+|. |.....-++ +++ +++|||+++.-.+.|+++.-.++++..  .....+++.  ..-++.+|.-+
T Consensus       190 v~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~--d~~~~i~evi~EmTdgGvDysf  267 (375)
T KOG0022|consen  190 VEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPK--DLKKPIQEVIIEMTDGGVDYSF  267 (375)
T ss_pred             cCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChh--hccccHHHHHHHHhcCCceEEE
Confidence            35678888888887 544444444 344 799999999999999987555555421  000001110  01345666655


Q ss_pred             eccccccCChhHHHHHHHHHhcCCC-cEEEEEec
Q 024647          106 IAQAMHWFDLPQFYNQVKWVLKKPN-GVIATWCY  138 (265)
Q Consensus       106 ~~~~~~~~~~~~~l~~~~~~Lk~pg-G~l~~~~~  138 (265)
                      -.     .....++.++....+ .| |.-++...
T Consensus       268 Ec-----~G~~~~m~~al~s~h-~GwG~sv~iGv  295 (375)
T KOG0022|consen  268 EC-----IGNVSTMRAALESCH-KGWGKSVVIGV  295 (375)
T ss_pred             Ee-----cCCHHHHHHHHHHhh-cCCCeEEEEEe
Confidence            32     344678888888888 67 87666444

>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO

Probab=83.47  E-value=6.8  Score=30.45  Aligned_cols=114  Identities=17%  Similarity=0.229  Sum_probs=53.4

Q ss_pred             HHHHHHHHHhhhCCCCcHHHHHHHHhhCCCCCeEEEEcCCcchhHH-HHHhcCCc--EEEEcCCHHHHHHHHcCCCceEE
Q 024647            4 LFIKQAKQYAETRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAA-SLSGIFEN--VIGTETSPKQIEFATKLPNIRYE   80 (265)
Q Consensus         4 ~f~~~a~~Y~~~rp~y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~-~l~~~~~~--v~~vD~s~~~~~~a~~~~~~~~~   80 (265)
                      .|...++..++.+    .++.+.|......+.+|.=.|+|....+. .++....+  ...+|.++.  .+.+-.++...-
T Consensus        42 ~y~~f~~~~~~~~----~~l~~~L~~~~~~gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np~--K~G~~~PGt~ip  115 (160)
T PF08484_consen   42 YYENFAKRVEQSK----AELREFLEKLKAEGKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNPL--KQGKYLPGTHIP  115 (160)
T ss_dssp             HHHHHHHHHHHHH----HHHHHHHHHHHHTT--EEEE---SHHHHHHHHHT--TTTS--EEES-GG--GTTEE-TTT--E
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHcCCEEEEECcchHHHHHHHHhCCCcceeEEEEeCChh--hcCcccCCCCCe
Confidence            3444444444432    34555555444566889999999865554 34444344  357788765  222223443332


Q ss_pred             ecCCccchhhhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEE
Q 024647           81 LTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATW  136 (265)
Q Consensus        81 ~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~  136 (265)
                      ..+       .+.+  .....|.|+.. +  |.-.+...+++...+. .||.|++-
T Consensus       116 I~~-------p~~l--~~~~pd~vivl-a--w~y~~EI~~~~~~~~~-~gg~fi~p  158 (160)
T PF08484_consen  116 IVS-------PEEL--KERKPDYVIVL-A--WNYKDEIIEKLREYLE-RGGKFIVP  158 (160)
T ss_dssp             EEE-------GGG----SS--SEEEES----GGGHHHHHHHTHHHHH-TT-EEEE-
T ss_pred             ECC-------HHHH--hhCCCCEEEEc-C--hhhHHHHHHHHHHHHh-cCCEEEEe
Confidence            211       1222  33457887762 2  3334678888888889 89999874

; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=83.47  E-value=20  Score=30.29  Aligned_cols=95  Identities=17%  Similarity=0.139  Sum_probs=60.4

Q ss_pred             CCCCeEEEEcC--CcchhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           32 TNHELAWDVGT--GSGQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        32 ~~~~~vlDvGc--G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      .++.+||-.|+  +.|..+..+++. +.+|+++..++...+.+++. ++.............+..+   ...+|+++...
T Consensus       141 ~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~i~~~---~~~~d~vl~~~  216 (320)
T cd08243         141 QPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLKEL-GADEVVIDDGAIAEQLRAA---PGGFDKVLELV  216 (320)
T ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc-CCcEEEecCccHHHHHHHh---CCCceEEEECC
Confidence            45678888886  347777777764 56899999999888877653 2222211110011122222   45699998642


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      .      ...+.++.+.|+ ++|+++...
T Consensus       217 ~------~~~~~~~~~~l~-~~g~~v~~g  238 (320)
T cd08243         217 G------TATLKDSLRHLR-PGGIVCMTG  238 (320)
T ss_pred             C------hHHHHHHHHHhc-cCCEEEEEc
Confidence            2      256888899999 999988654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=83.45  E-value=20  Score=31.17  Aligned_cols=98  Identities=13%  Similarity=0.172  Sum_probs=57.2

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCCc-cchhhhhhccCCCCceeEEEec
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSPA-MSIAELEQNVAAQSTVDLVTIA  107 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~Dlv~~~  107 (265)
                      .++.+||-.|+|. |..+..+++. +. .++++|.++...+.+++.. +........ .....+..+ .+...+|+++..
T Consensus       173 ~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g-~~~v~~~~~~~~~~~~~~~-~~~~~vdvvld~  250 (350)
T cd08256         173 KFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARKFG-ADVVLNPPEVDVVEKIKEL-TGGYGCDIYIEA  250 (350)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHHcC-CcEEecCCCcCHHHHHHHH-hCCCCCCEEEEC
Confidence            4556666677654 5566666655 33 4889999988887776542 222211100 000112222 133458988864


Q ss_pred             cccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647          108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                           ......+..+.+.|+ ++|+++...
T Consensus       251 -----~g~~~~~~~~~~~l~-~~G~~v~~g  274 (350)
T cd08256         251 -----TGHPSAVEQGLNMIR-KLGRFVEFS  274 (350)
T ss_pred             -----CCChHHHHHHHHHhh-cCCEEEEEc
Confidence                 222346888999999 999988754

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=83.45  E-value=13  Score=32.18  Aligned_cols=95  Identities=22%  Similarity=0.184  Sum_probs=57.4

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA  109 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~  109 (265)
                      .++.+++=.|||. |..+..+++. +.++++++.++...+.++.+....+.....    .+...  ...+.+|+|+....
T Consensus       168 ~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~----~~~~~--~~~~~~d~v~~~~g  241 (337)
T cd05283         168 GPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKD----PEAMK--KAAGSLDLIIDTVS  241 (337)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcc----hhhhh--hccCCceEEEECCC
Confidence            4556666678754 6666666654 558999999998888876543112221110    11111  11356888885422


Q ss_pred             cccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          110 MHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       110 ~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                           ....+..+.+.|+ ++|+++....
T Consensus       242 -----~~~~~~~~~~~l~-~~G~~v~~g~  264 (337)
T cd05283         242 -----ASHDLDPYLSLLK-PGGTLVLVGA  264 (337)
T ss_pred             -----CcchHHHHHHHhc-CCCEEEEEec
Confidence                 2235788899999 8999887543

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=83.00  E-value=9.7  Score=34.48  Aligned_cols=39  Identities=21%  Similarity=0.290  Sum_probs=29.7

Q ss_pred             CeEEEEcCCcc--hhHHHHHhcCCcEEEEcCCHHHHHHHHc
Q 024647           35 ELAWDVGTGSG--QAAASLSGIFENVIGTETSPKQIEFATK   73 (265)
Q Consensus        35 ~~vlDvGcG~G--~~~~~l~~~~~~v~~vD~s~~~~~~a~~   73 (265)
                      ++|-=||.|..  .++..|++++.+|+++|+++..++..+.
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~   44 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINR   44 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHC
Confidence            45778888863  4444567788899999999999887653

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=82.88  E-value=11  Score=35.99  Aligned_cols=94  Identities=15%  Similarity=0.065  Sum_probs=58.8

Q ss_pred             CCeEEEEcCCc-chhH-HHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhcc-CCCCceeEEEecccc
Q 024647           34 HELAWDVGTGS-GQAA-ASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNV-AAQSTVDLVTIAQAM  110 (265)
Q Consensus        34 ~~~vlDvGcG~-G~~~-~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~Dlv~~~~~~  110 (265)
                      .++|+=+|||. |+.. +.|.+.+.+++.+|.+++.++.+++ .+.....+++    .+.+-+. ..-+..|++++... 
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-~g~~v~~GDa----t~~~~L~~agi~~A~~vvv~~~-  473 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK-FGMKVFYGDA----TRMDLLESAGAAKAEVLINAID-  473 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-cCCeEEEEeC----CCHHHHHhcCCCcCCEEEEEeC-
Confidence            46799999986 6544 3455567789999999999999986 3566677554    2222221 13346888887521 


Q ss_pred             ccCChhH--HHHHHHHHhcCCCcEEEEEe
Q 024647          111 HWFDLPQ--FYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       111 ~~~~~~~--~l~~~~~~Lk~pgG~l~~~~  137 (265)
                         |.+.  .+-...|-+. |+-.++.-.
T Consensus       474 ---d~~~n~~i~~~ar~~~-p~~~iiaRa  498 (621)
T PRK03562        474 ---DPQTSLQLVELVKEHF-PHLQIIARA  498 (621)
T ss_pred             ---CHHHHHHHHHHHHHhC-CCCeEEEEE
Confidence               3332  3334455567 776665533

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=82.87  E-value=21  Score=31.50  Aligned_cols=102  Identities=17%  Similarity=0.069  Sum_probs=61.0

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      .++.+||-.|||. |..+..+++. +. +++++|.++...+.+++.. +......-......+..+. + +.+|+++...
T Consensus       175 ~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g-~~~v~~~~~~~~~~i~~~~-~-~~~d~v~d~~  251 (375)
T cd08282         175 QPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIG-AIPIDFSDGDPVEQILGLE-P-GGVDRAVDCV  251 (375)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcC-CeEeccCcccHHHHHHHhh-C-CCCCEEEECC
Confidence            4567777788874 6666666654 44 6889999998888877643 2222111000001122221 2 4689998643


Q ss_pred             ccc----cC--ChhHHHHHHHHHhcCCCcEEEEEe
Q 024647          109 AMH----WF--DLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       109 ~~~----~~--~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      .-.    +.  +....+.++.++|+ ++|.++...
T Consensus       252 g~~~~~~~~~~~~~~~~~~~~~~l~-~~g~~~~~g  285 (375)
T cd08282         252 GYEARDRGGEAQPNLVLNQLIRVTR-PGGGIGIVG  285 (375)
T ss_pred             CCcccccccccchHHHHHHHHHHhh-cCcEEEEEe
Confidence            211    11  33457889999999 999987544

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=82.71  E-value=24  Score=30.18  Aligned_cols=97  Identities=13%  Similarity=0.088  Sum_probs=58.6

Q ss_pred             CCCCeEEEEcC-C-cchhHHHHHhc-CCcEEEEcCCHHHHHHHHc-CCCceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647           32 TNHELAWDVGT-G-SGQAAASLSGI-FENVIGTETSPKQIEFATK-LPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIA  107 (265)
Q Consensus        32 ~~~~~vlDvGc-G-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~  107 (265)
                      .++.+||=.|+ | .|..+..+++. +.++++++.++...+.+++ ..-..+....-......+....  .+.+|+++..
T Consensus       144 ~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~--~~~~d~vi~~  221 (329)
T cd05288         144 KPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEELGFDAAINYKTPDLAEALKEAA--PDGIDVYFDN  221 (329)
T ss_pred             CCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhcCCceEEecCChhHHHHHHHhc--cCCceEEEEc
Confidence            45677888884 3 46776666654 5689999999888887765 3211222211100001122221  2568988854


Q ss_pred             cccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647          108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      ..      ...+..+.+.|+ ++|+++...
T Consensus       222 ~g------~~~~~~~~~~l~-~~G~~v~~g  244 (329)
T cd05288         222 VG------GEILDAALTLLN-KGGRIALCG  244 (329)
T ss_pred             ch------HHHHHHHHHhcC-CCceEEEEe
Confidence            22      247888899999 899988654

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=82.70  E-value=4.5  Score=35.34  Aligned_cols=71  Identities=15%  Similarity=0.159  Sum_probs=50.1

Q ss_pred             CCeEEEEcCCcchhHHHHHhcCCc-EEEEcCCHHHHHHHHc-CCCceEEecCCccchhhhhhccC---CCCceeEEEecc
Q 024647           34 HELAWDVGTGSGQAAASLSGIFEN-VIGTETSPKQIEFATK-LPNIRYELTSPAMSIAELEQNVA---AQSTVDLVTIAQ  108 (265)
Q Consensus        34 ~~~vlDvGcG~G~~~~~l~~~~~~-v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~~---~~~~~Dlv~~~~  108 (265)
                      ..+++|+=||-|.+...+...+.+ +.++|+++..++.-+. ++......       .|+.....   ....+|+++...
T Consensus         3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~~~~~~-------~di~~~~~~~~~~~~~DvligGp   75 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPHGDIIL-------GDIKELDGEALRKSDVDVLIGGP   75 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCCCceee-------chHhhcChhhccccCCCEEEeCC
Confidence            357999999999999999988865 7799999999987664 33333333       34443321   111799999977


Q ss_pred             ccc
Q 024647          109 AMH  111 (265)
Q Consensus       109 ~~~  111 (265)
                      .+.
T Consensus        76 PCQ   78 (328)
T COG0270          76 PCQ   78 (328)
T ss_pred             CCc
Confidence            554

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=82.68  E-value=20  Score=30.62  Aligned_cols=97  Identities=12%  Similarity=0.114  Sum_probs=56.9

Q ss_pred             CCCCeEEEEcC-C-cchhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCc-cchhhhhhccCCCCceeEEEec
Q 024647           32 TNHELAWDVGT-G-SGQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPA-MSIAELEQNVAAQSTVDLVTIA  107 (265)
Q Consensus        32 ~~~~~vlDvGc-G-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~Dlv~~~  107 (265)
                      .++.+||=.|+ | .|..+..+++. +.+++.+.-+++..+.+++. ++........ .....+..+ .....+|+|+..
T Consensus       138 ~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~i~~~-~~~~~~d~v~d~  215 (324)
T cd08292         138 KPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRAL-GIGPVVSTEQPGWQDKVREA-AGGAPISVALDS  215 (324)
T ss_pred             CCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHhc-CCCEEEcCCCchHHHHHHHH-hCCCCCcEEEEC
Confidence            45677877775 3 47777777765 56777776666666666553 3322221110 000112222 233469999854


Q ss_pred             cccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647          108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      ..    .  ..+.++.+.|+ ++|+++...
T Consensus       216 ~g----~--~~~~~~~~~l~-~~g~~v~~g  238 (324)
T cd08292         216 VG----G--KLAGELLSLLG-EGGTLVSFG  238 (324)
T ss_pred             CC----C--hhHHHHHHhhc-CCcEEEEEe
Confidence            22    2  35678899999 999998654

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=82.63  E-value=7.5  Score=33.20  Aligned_cols=38  Identities=21%  Similarity=0.168  Sum_probs=29.5

Q ss_pred             CeEEEEcCCc-c-hhHHHHHhcCCcEEEEcCCHHHHHHHH
Q 024647           35 ELAWDVGTGS-G-QAAASLSGIFENVIGTETSPKQIEFAT   72 (265)
Q Consensus        35 ~~vlDvGcG~-G-~~~~~l~~~~~~v~~vD~s~~~~~~a~   72 (265)
                      .+|.-||||. | .++..++..+.+|+.+|.+++.++.+.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~   43 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAM   43 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHH
Confidence            4578899996 3 455566777889999999999987653

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=82.52  E-value=7.5  Score=33.17  Aligned_cols=37  Identities=19%  Similarity=0.005  Sum_probs=29.1

Q ss_pred             eEEEEcCCc--chhHHHHHhcCCcEEEEcCCHHHHHHHH
Q 024647           36 LAWDVGTGS--GQAAASLSGIFENVIGTETSPKQIEFAT   72 (265)
Q Consensus        36 ~vlDvGcG~--G~~~~~l~~~~~~v~~vD~s~~~~~~a~   72 (265)
                      +|.=||+|.  +.++..+++.+.+|+.+|.+++.++.+.
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~   41 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQ   41 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Confidence            577889986  3455556777889999999999988765

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=82.31  E-value=8.2  Score=33.27  Aligned_cols=88  Identities=16%  Similarity=0.180  Sum_probs=51.7

Q ss_pred             CeEEEEcCCc-c-hhHHHHHhcC--CcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecccc
Q 024647           35 ELAWDVGTGS-G-QAAASLSGIF--ENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAM  110 (265)
Q Consensus        35 ~~vlDvGcG~-G-~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~  110 (265)
                      .+|.=||+|. | .++..+.+.+  .+|+++|.++..++.+++..-.....       .+.+..   -...|+|+.....
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~-------~~~~~~---~~~aDvViiavp~   76 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVT-------TSAAEA---VKGADLVILCVPV   76 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceec-------CCHHHH---hcCCCEEEECCCH
Confidence            5688899986 3 4445565555  37999999999888776532111111       112221   1357998876432


Q ss_pred             ccCChhHHHHHHHHHhcCCCcEEEE
Q 024647          111 HWFDLPQFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus       111 ~~~~~~~~l~~~~~~Lk~pgG~l~~  135 (265)
                      .  ....++.++...++ +|+.++.
T Consensus        77 ~--~~~~v~~~l~~~l~-~~~iv~d   98 (307)
T PRK07502         77 G--ASGAVAAEIAPHLK-PGAIVTD   98 (307)
T ss_pred             H--HHHHHHHHHHhhCC-CCCEEEe
Confidence            2  12345666767778 7775543

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=82.21  E-value=8.1  Score=35.12  Aligned_cols=72  Identities=22%  Similarity=0.117  Sum_probs=44.9

Q ss_pred             CCCeEEEEcCCc-ch-hHHHHHhcCCcEEEEcCCHHHHHHHHc-CCCceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647           33 NHELAWDVGTGS-GQ-AAASLSGIFENVIGTETSPKQIEFATK-LPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIA  107 (265)
Q Consensus        33 ~~~~vlDvGcG~-G~-~~~~l~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~  107 (265)
                      ..++++=+|||. |. ++..|.+.+.+|+.+|.+++.++.++. ..++....+++... ..++..  .-..+|.|++.
T Consensus       230 ~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~-~~L~~~--~~~~a~~vi~~  304 (453)
T PRK09496        230 PVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQ-ELLEEE--GIDEADAFIAL  304 (453)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCH-HHHHhc--CCccCCEEEEC
Confidence            357788888864 32 222334456789999999999887765 34677777665211 222222  23468888764

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=82.12  E-value=10  Score=32.70  Aligned_cols=90  Identities=14%  Similarity=0.141  Sum_probs=54.9

Q ss_pred             CCCeEEEEcCCc-chhHHHH-HhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecccc
Q 024647           33 NHELAWDVGTGS-GQAAASL-SGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAM  110 (265)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l-~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~  110 (265)
                      .+.+|+=+|+|. |...... ...+++|+.+|.++...+.++.. +..+...      .++.+.   -..+|+|+.... 
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~-G~~~~~~------~~l~~~---l~~aDiVI~t~p-  219 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEM-GLSPFHL------SELAEE---VGKIDIIFNTIP-  219 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc-CCeeecH------HHHHHH---hCCCCEEEECCC-
Confidence            468899999985 4333333 34567899999998877777653 3332210      222222   135899997532 


Q ss_pred             ccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          111 HWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       111 ~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                          ..-.-+++...++ ||+.++=..+
T Consensus       220 ----~~~i~~~~l~~~~-~g~vIIDla~  242 (296)
T PRK08306        220 ----ALVLTKEVLSKMP-PEALIIDLAS  242 (296)
T ss_pred             ----hhhhhHHHHHcCC-CCcEEEEEcc
Confidence                1223456677889 8887764333

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=82.10  E-value=20  Score=31.80  Aligned_cols=99  Identities=13%  Similarity=0.046  Sum_probs=59.1

Q ss_pred             CCCCeEEEEcC-C-cchhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCc----------------------c
Q 024647           32 TNHELAWDVGT-G-SGQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPA----------------------M   86 (265)
Q Consensus        32 ~~~~~vlDvGc-G-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~----------------------~   86 (265)
                      .++.+||-.|+ | .|..+..+++. +.++++++.++...+.++++.....+...-.                      .
T Consensus       192 ~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (393)
T cd08246         192 KPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCRALGAEGVINRRDFDHWGVLPDVNSEAYTAWTKEARR  271 (393)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEcccccccccccccccchhhhhhhhccch
Confidence            45678888887 3 36666666664 5678889999998888876421111111000                      0


Q ss_pred             chhhhhhccCCCC-ceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647           87 SIAELEQNVAAQS-TVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        87 ~~~d~~~~~~~~~-~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      ....+..+ .... .+|+|+....      ...+.+..+.|+ ++|+++....
T Consensus       272 ~~~~v~~l-~~~~~g~d~vid~~g------~~~~~~~~~~l~-~~G~~v~~g~  316 (393)
T cd08246         272 FGKAIWDI-LGGREDPDIVFEHPG------RATFPTSVFVCD-RGGMVVICAG  316 (393)
T ss_pred             HHHHHHHH-hCCCCCCeEEEECCc------hHhHHHHHHHhc-cCCEEEEEcc
Confidence            00111112 1223 5898886422      245778889999 8999987543

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>PRK08177 short chain dehydrogenase; Provisional

Probab=82.10  E-value=12  Score=30.23  Aligned_cols=74  Identities=22%  Similarity=0.181  Sum_probs=40.8

Q ss_pred             CeEEEEcCCcc---hhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhcc--CCCCceeEEEeccc
Q 024647           35 ELAWDVGTGSG---QAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNV--AAQSTVDLVTIAQA  109 (265)
Q Consensus        35 ~~vlDvGcG~G---~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~Dlv~~~~~  109 (265)
                      +++|=.|+..|   .++..|++.+.+|++++.++.-.+..+...++.+...+.... .++..+-  +..+.+|+|+.+..
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d~-~~~~~~~~~~~~~~id~vi~~ag   80 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQALPGVHIEKLDMNDP-ASLDQLLQRLQGQRFDLLFVNAG   80 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHhccccceEEcCCCCH-HHHHHHHHHhhcCCCCEEEEcCc
Confidence            35676776443   234445566778999998876665554444556655544211 1111110  12346899887653

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=82.08  E-value=22  Score=30.82  Aligned_cols=94  Identities=20%  Similarity=0.186  Sum_probs=56.7

Q ss_pred             CCCCeEEEEcC-C-cchhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhc-cCCCCceeEEEec
Q 024647           32 TNHELAWDVGT-G-SGQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQN-VAAQSTVDLVTIA  107 (265)
Q Consensus        32 ~~~~~vlDvGc-G-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~Dlv~~~  107 (265)
                      .++.+||-.|+ | .|..+..+++. +.++++++.+. ..+.+++. ++........   .+.... ......+|+|+..
T Consensus       176 ~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~~~-g~~~~~~~~~---~~~~~~~~~~~~~~d~vi~~  250 (350)
T cd08274         176 GAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVRAL-GADTVILRDA---PLLADAKALGGEPVDVVADV  250 (350)
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHHhc-CCeEEEeCCC---ccHHHHHhhCCCCCcEEEec
Confidence            46678888987 3 36666666654 56888887655 56666653 2322221110   011111 1234569999864


Q ss_pred             cccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647          108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      ..      ...+..+.+.|+ ++|.++...
T Consensus       251 ~g------~~~~~~~~~~l~-~~G~~v~~g  273 (350)
T cd08274         251 VG------GPLFPDLLRLLR-PGGRYVTAG  273 (350)
T ss_pred             CC------HHHHHHHHHHhc-cCCEEEEec
Confidence            22      246788899999 999988654

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=82.04  E-value=5.9  Score=33.80  Aligned_cols=38  Identities=21%  Similarity=-0.044  Sum_probs=28.7

Q ss_pred             CeEEEEcCCcc--hhHHHHHhcCCcEEEEcCCHHHHHHHH
Q 024647           35 ELAWDVGTGSG--QAAASLSGIFENVIGTETSPKQIEFAT   72 (265)
Q Consensus        35 ~~vlDvGcG~G--~~~~~l~~~~~~v~~vD~s~~~~~~a~   72 (265)
                      .+|.-||+|.-  .++..++..+.+|+.+|++++.++.++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~   43 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAK   43 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHH
Confidence            45788899862  444456677789999999999887765

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=82.02  E-value=10  Score=32.30  Aligned_cols=94  Identities=17%  Similarity=0.181  Sum_probs=55.9

Q ss_pred             eEEEEcCCc-c-hhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCcc---chhhhhhccCCCCceeEEEecccc
Q 024647           36 LAWDVGTGS-G-QAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAM---SIAELEQNVAAQSTVDLVTIAQAM  110 (265)
Q Consensus        36 ~vlDvGcG~-G-~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~---~~~d~~~~~~~~~~~Dlv~~~~~~  110 (265)
                      +|.=+|||. | .++..|++.+.+|+.++.+++.++..++. +.....+....   ...+.+.    ...+|+|+...--
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~----~~~~d~vila~k~   76 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNEN-GLRLEDGEITVPVLAADDPAE----LGPQDLVILAVKA   76 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHc-CCcccCCceeecccCCCChhH----cCCCCEEEEeccc
Confidence            578899986 3 45555677788999999988777766542 22220100000   0011111    1578999876431


Q ss_pred             ccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647          111 HWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       111 ~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                        .+...+++.+...+. ++..++...
T Consensus        77 --~~~~~~~~~l~~~l~-~~~~iv~~~  100 (304)
T PRK06522         77 --YQLPAALPSLAPLLG-PDTPVLFLQ  100 (304)
T ss_pred             --ccHHHHHHHHhhhcC-CCCEEEEec
Confidence              245678888888888 776666533

>PLN02702 L-idonate 5-dehydrogenase

Probab=81.98  E-value=23  Score=31.11  Aligned_cols=100  Identities=11%  Similarity=0.069  Sum_probs=59.5

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEec-CC--ccchhhhhhcc-CCCCceeEE
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELT-SP--AMSIAELEQNV-AAQSTVDLV  104 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-~~--~~~~~d~~~~~-~~~~~~Dlv  104 (265)
                      .++.+||-+|+|. |..+..+++. +. .|+++|.++...+.+++.. +..... ..  ......+..+. ...+.+|+|
T Consensus       180 ~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v  258 (364)
T PLN02702        180 GPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLG-ADEIVLVSTNIEDVESEVEEIQKAMGGGIDVS  258 (364)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhC-CCEEEecCcccccHHHHHHHHhhhcCCCCCEE
Confidence            4567788888764 6666666664 44 4889999988888777542 221110 00  00001111111 123468988


Q ss_pred             EeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          105 TIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       105 ~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      +..     ......+.++.+.|+ ++|+++....
T Consensus       259 id~-----~g~~~~~~~~~~~l~-~~G~~v~~g~  286 (364)
T PLN02702        259 FDC-----VGFNKTMSTALEATR-AGGKVCLVGM  286 (364)
T ss_pred             EEC-----CCCHHHHHHHHHHHh-cCCEEEEEcc
Confidence            864     222457899999999 9999876543

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=81.93  E-value=26  Score=29.88  Aligned_cols=98  Identities=19%  Similarity=0.177  Sum_probs=59.6

Q ss_pred             CCCCeEEEEcC--CcchhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCcc-chhhhhhccCCCCceeEEEec
Q 024647           32 TNHELAWDVGT--GSGQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAM-SIAELEQNVAAQSTVDLVTIA  107 (265)
Q Consensus        32 ~~~~~vlDvGc--G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~Dlv~~~  107 (265)
                      .++.+||=.|+  +.|..+..+++. +.+++.+..++...+.+++..-..+....... ....+... .....+|+++..
T Consensus       139 ~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~i~~  217 (334)
T PTZ00354        139 KKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCKKLAAIILIRYPDEEGFAPKVKKL-TGEKGVNLVLDC  217 (334)
T ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEecCChhHHHHHHHHH-hCCCCceEEEEC
Confidence            45677888874  347777777754 55777788889888888653221122111100 00111222 234569999864


Q ss_pred             cccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647          108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      ..      ...+..+.+.|+ ++|.++...
T Consensus       218 ~~------~~~~~~~~~~l~-~~g~~i~~~  240 (334)
T PTZ00354        218 VG------GSYLSETAEVLA-VDGKWIVYG  240 (334)
T ss_pred             Cc------hHHHHHHHHHhc-cCCeEEEEe
Confidence            32      357788999999 999988654

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=81.54  E-value=29  Score=29.67  Aligned_cols=99  Identities=14%  Similarity=0.086  Sum_probs=58.4

Q ss_pred             CCCCeEEEEc-CC-cchhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           32 TNHELAWDVG-TG-SGQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        32 ~~~~~vlDvG-cG-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      .++.+|+=.| +| .|..+..+++. +.++++++.++...+.+++..-..+...........+... .....+|+++...
T Consensus       139 ~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~d~vl~~~  217 (327)
T PRK10754        139 KPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGSAQKAQRAKKAGAWQVINYREENIVERVKEI-TGGKKVRVVYDSV  217 (327)
T ss_pred             CCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEEcCCCCcHHHHHHHH-cCCCCeEEEEECC
Confidence            4556776665 33 47777777664 5689999999988887765421122221110000112222 2345689888532


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      .      ...+.++.+.|+ ++|+++....
T Consensus       218 ~------~~~~~~~~~~l~-~~g~~v~~g~  240 (327)
T PRK10754        218 G------KDTWEASLDCLQ-RRGLMVSFGN  240 (327)
T ss_pred             c------HHHHHHHHHHhc-cCCEEEEEcc
Confidence            1      246777889999 9999987553

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=81.03  E-value=15  Score=34.96  Aligned_cols=96  Identities=13%  Similarity=0.022  Sum_probs=58.0

Q ss_pred             CCeEEEEcCCc-chhH-HHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccccc
Q 024647           34 HELAWDVGTGS-GQAA-ASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMH  111 (265)
Q Consensus        34 ~~~vlDvGcG~-G~~~-~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~  111 (265)
                      .++|+=+|+|. |... +.|.+++.+++.+|.+++.++.+++ .+.....+++... .-+++.  .-+..|++++...  
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-~g~~v~~GDat~~-~~L~~a--gi~~A~~vv~~~~--  473 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK-YGYKVYYGDATQL-ELLRAA--GAEKAEAIVITCN--  473 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-CCCeEEEeeCCCH-HHHHhc--CCccCCEEEEEeC--
Confidence            35678787775 5433 3344566789999999999999986 4566677555210 112222  3346888887521  


Q ss_pred             cCChhH--HHHHHHHHhcCCCcEEEEEec
Q 024647          112 WFDLPQ--FYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       112 ~~~~~~--~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                        |.+.  .+-...|.+. |+..++.-..
T Consensus       474 --d~~~n~~i~~~~r~~~-p~~~IiaRa~  499 (601)
T PRK03659        474 --EPEDTMKIVELCQQHF-PHLHILARAR  499 (601)
T ss_pred             --CHHHHHHHHHHHHHHC-CCCeEEEEeC
Confidence              3232  3334456677 7877776443

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=80.90  E-value=1.8  Score=37.34  Aligned_cols=38  Identities=13%  Similarity=0.207  Sum_probs=29.9

Q ss_pred             ceeEEEeccccccC---C---hhHHHHHHHHHhcCCCcEEEEEec
Q 024647          100 TVDLVTIAQAMHWF---D---LPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       100 ~~Dlv~~~~~~~~~---~---~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      +.++|+..++++.+   .   ..+++..+-..++ ||..|.+.+.
T Consensus       200 ~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~-~GslLLVvDS  243 (315)
T PF11312_consen  200 SPDLITLLFTLNELFSTSISKTTKFLLRLTDICP-PGSLLLVVDS  243 (315)
T ss_pred             hhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcC-CCcEEEEEcC
Confidence            57899988887754   2   3479999999999 8998887654

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=80.61  E-value=1.2  Score=39.93  Aligned_cols=47  Identities=19%  Similarity=0.205  Sum_probs=42.0

Q ss_pred             HHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc
Q 024647           27 ITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK   73 (265)
Q Consensus        27 l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~   73 (265)
                      +....+++..|-|+-||-|-++..++..++.|++-|.++++++..+.
T Consensus       243 lsg~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~  289 (495)
T KOG2078|consen  243 LSGLFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKA  289 (495)
T ss_pred             HhhccCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHH
Confidence            44456788999999999999999999999999999999999998874

>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes

Probab=80.33  E-value=1.9  Score=35.93  Aligned_cols=51  Identities=24%  Similarity=0.252  Sum_probs=37.7

Q ss_pred             HHHHHHHhhCC--CCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHH
Q 024647           22 ELFKFITSKTT--NHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFAT   72 (265)
Q Consensus        22 ~l~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~   72 (265)
                      .++.+|.+..+  +..+++|.=||+|.++..+.....+|+.-|+++..+...+
T Consensus         7 ~l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~   59 (260)
T PF02086_consen    7 KLAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWK   59 (260)
T ss_dssp             GGHHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHH
Confidence            46677777777  5789999999999999999888889999999998877665

There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=80.11  E-value=6.1  Score=33.67  Aligned_cols=57  Identities=23%  Similarity=0.329  Sum_probs=49.3

Q ss_pred             CCCcHHHHHHHHhh-CCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc
Q 024647           17 PNYPEELFKFITSK-TTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK   73 (265)
Q Consensus        17 p~y~~~l~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~   73 (265)
                      ..+|.+++.++... ..+++.|||-=+|+|.........+..++|+|+++.-++.+.+
T Consensus       205 ~~~P~~l~~r~i~~~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~  262 (302)
T COG0863         205 AQKPLALIERLIRDYSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALK  262 (302)
T ss_pred             CCChHHHHHHHHHhcCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHH
Confidence            45688888887654 4678999999999999999999999999999999999998875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	265
4hg2_A	257	The Structure Of A Putative Type Ii Methyltransfera		3e-26
3g5t_A	299	Crystal Structure Of Trans-Aconitate 3-Methyltransf		3e-06

>pdb|4HG2|A Chain A, The Structure Of A Putative Type Ii Methyltransferase From Anaeromyxobacter Dehalogenans. Length = 257

Iteration: 1
 Score =  115 bits (287), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 120/258 (46%), Gaps = 18/258 (6%)
Query: 5   FIKQAKQYAETRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETS 64
           F   A  Y   RP YP  LF+++         A D G GSGQA+  L+  FE V   +  
Sbjct: 11  FTPVADAYRAFRPRYPRALFRWLGEVAPARGDALDCGCGSGQASLGLAEFFERVHAVDPG 70
Query: 65  PKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKW 124
             QI  A + P + Y       ++A  E      ++VD+   AQA HWFDL +F+ +++ 
Sbjct: 71  EAQIRQALRHPRVTY-------AVAPAEDTGLPPASVDVAIAAQAXHWFDLDRFWAELRR 123
Query: 125 VLKKPNGVIATWCYTVPEVNVSVDAVFQPFYTVDSDPFWEPQRKLVDNKYMTIDFPFEPV 184
           V  +P  V A   Y +  V+  VDAV    Y       W P+R  V++ Y T+ FPF  +
Sbjct: 124 V-ARPGAVFAAVTYGLTRVDPEVDAVVDRLYHGLLARDWPPERVHVESGYRTLPFPFPEL 182
Query: 185 DGADSTGPFDRFVIEKTMDLEGYFSYIRSWSAYQTAKDK-GVELLTENVIENFRRAWNED 243
           +      P +   IE+    + +  Y+ +WSA    + + G + L E +    R AW   
Sbjct: 183 EAP----PLE---IEERWPXDAFLGYLGTWSAVTAHRRRTGADPLAE-IAPALRAAWGTP 234
Query: 244 GQSRKVVRFPIYLRIGKV 261
            +  +V  +PI +R G++
Sbjct: 235 ERPLRVT-WPIAIRAGRI 251

>pdb|3G5T|A Chain A, Crystal Structure Of Trans-Aconitate 3-Methyltransferase From Yeast Length = 299

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 109/267 (40%), Gaps = 48/267 (17%)
Query: 35  ELAWDVGTGSGQAA---ASLSGIFENVIGTETSPKQIEFATKLP--------NIRYELTS 83
           +L  DVG G G A    A     FE +IG++ S   I+ A  +         N+ ++++S
Sbjct: 38  KLLVDVGCGPGTATLQXAQELKPFEQIIGSDLSATXIKTAEVIKEGSPDTYKNVSFKISS 97
Query: 84  PAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTVP-- 141
            +     L  +   +  +D +T  +  HWFD  +F       L+K +G IA W Y  P  
Sbjct: 98  -SDDFKFLGADSVDKQKIDXITAVECAHWFDFEKFQRSAYANLRK-DGTIAIWGYADPIF 155
Query: 142 -------EVNVSVDAVFQPFYTVDSDPFWE-PQRKLVDN--KYMTID-----------FP 180
                  ++ + V     P+      P+WE P R  + N  K   +D           F 
Sbjct: 156 PDYPEFDDLXIEV-----PYGKQGLGPYWEQPGRSRLRNXLKDSHLDPELFHDIQVSYFC 210
Query: 181 FEPVDGADSTGPFDR--FVIEKTMDLEGYFSYIRSWSAY----QTAKDKGVELLTENVI- 233
            E V          +   +I K + L  +  Y+R+WSAY    Q  K+K  E + +  I 
Sbjct: 211 AEDVRDKVKLHQHTKKPLLIRKQVTLVEFADYVRTWSAYHQWKQDPKNKDKEDVADWFIK 270
Query: 234 ENFRRAWNEDGQSRKVVRFPIYLRIGK 260
           E+ RR       ++  V +  + ++GK
Sbjct: 271 ESLRRRPELSTNTKIEVVWNTFYKLGK 297

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	265
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	9e-64
3ege_A	261	Putative methyltransferase from antibiotic biosyn	2e-16
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	1e-11
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	5e-10
3i9f_A	170	Putative type 11 methyltransferase; structural gen	9e-10
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	9e-10
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	8e-09
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	8e-09
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	2e-08
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	6e-08
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	7e-08
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	3e-07
1xxl_A	239	YCGJ protein; structural genomics, protein structu	3e-07
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	5e-07
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	6e-07
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	1e-06
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	1e-06
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	1e-06
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	1e-06
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	4e-06
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	4e-06
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	4e-06
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	1e-05
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	1e-05
3f4k_A	257	Putative methyltransferase; structural genomics, P	2e-05
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	2e-05
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	2e-05
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	2e-05
2p7i_A	250	Hypothetical protein; putative methyltransferase,	3e-05
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	5e-05
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	6e-05
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	8e-05
3cc8_A	230	Putative methyltransferase; structural genomics, j	1e-04
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	1e-04
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	1e-04
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	2e-04
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	2e-04
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	8e-04

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score =  200 bits (510), Expect = 9e-64
 Identities = 65/290 (22%), Positives = 112/290 (38%), Gaps = 39/290 (13%)

Query: 8   QAKQYAETRPNYPEELFKFITSKTTN-HELAWDVGTGSGQAAASLS---GIFENVIGTET 63
            +++Y+ +RP+YP + +K I        +L  DVG G G A   ++     FE +IG++ 
Sbjct: 10  NSERYSSSRPSYPSDFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDL 69

Query: 64  SPKQIEFATKL--------PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDL 115
           S   I+ A  +         N+ ++  S +     L  +   +  +D++T  +  HWFD 
Sbjct: 70  SATMIKTAEVIKEGSPDTYKNVSFK-ISSSDDFKFLGADSVDKQKIDMITAVECAHWFDF 128

Query: 116 PQFYNQVKWVLKKPNGVIATWCYTVPEV--NVSVDAVFQ--PFYTVDSDPFWE-PQRKLV 170
            +F       L+  +G IA W Y  P        D +    P+      P+WE P R  +
Sbjct: 129 EKFQRSAYANLR-KDGTIAIWGYADPIFPDYPEFDDLMIEVPYGKQGLGPYWEQPGRSRL 187

Query: 171 DNKYMTIDFPFEP----------VDGADSTGPFD-----RFVIEKTMDLEGYFSYIRSWS 215
            N         E            +                +I K + L  +  Y+R+WS
Sbjct: 188 RNMLKDSHLDPELFHDIQVSYFCAEDVRDKVKLHQHTKKPLLIRKQVTLVEFADYVRTWS 247

Query: 216 AYQTAKDKGVELLTENVIENF-----RRAWNEDGQSRKVVRFPIYLRIGK 260
           AY   K        E+V + F     RR       ++  V +  + ++GK
Sbjct: 248 AYHQWKQDPKNKDKEDVADWFIKESLRRRPELSTNTKIEVVWNTFYKLGK 297

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 75.7 bits (186), Expect = 2e-16
 Identities = 28/172 (16%), Positives = 64/172 (37%), Gaps = 12/172 (6%)

Query: 2   AELFIKQAKQYAETRPNYPEELFKFITS-KTTNHELAWDVGTGSGQAAASLSGIFENVIG 60
             ++    KQY++TR      +   I         +  D+G G+G  + +L+     V  
Sbjct: 2   MSIYNSIGKQYSQTRVPDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYA 61

Query: 61  TETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFY 119
            E S    + A   P + +  T  A ++A          +VD V    A+H F  L + +
Sbjct: 62  VEPSIVMRQQAVVHPQVEW-FTGYAENLA------LPDKSVDGVISILAIHHFSHLEKSF 114

Query: 120 NQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQPFYTVDSDPFWEPQRKLVD 171
            +++ ++ +   ++           + +   F   +  +    + P  + ++
Sbjct: 115 QEMQRII-RDGTIVLLTFDIRLAQRIWLYDYFPFLW--EDALRFLPLDEQIN 163

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263

 Score = 61.9 bits (150), Expect = 1e-11
 Identities = 44/272 (16%), Positives = 89/272 (32%), Gaps = 19/272 (6%)

Query: 1   MAELFIKQAKQYAETRPNYPEELFKFITSKTTNHELAW------DVGTGSGQAAASLSGI 54
           M+   ++ A  Y   R + PE   +  T+  +            ++G G+G+ A  L   
Sbjct: 1   MSSALLRAAYAYDRLRAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIAR 60

Query: 55  FENVIGTETSPKQIEFA-TKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF 113
               I  +     +E    K+  +  ++         +   +  +S V  V +    H  
Sbjct: 61  GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIP--LPDES-VHGVIVVHLWHLV 117

Query: 114 -DLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQPFYTVDSDPFWEPQRKLVDN 172
            D P+   +   VL KP G +                + + +    ++  +  +R L   
Sbjct: 118 PDWPKVLAEAIRVL-KPGGALLEGWDQAEA--SPEWTLQERWRAFAAEEGFPVERGLHAK 174

Query: 173 KYMTIDFPFEPVDGADSTGPFDRFVIEKTMD--LEGYFSYIRSWSAYQTAKDKGVELLTE 230
           +   ++     +     T    R+  E+T    LE      R +S  Q   +     + E
Sbjct: 175 RLKEVEEALRRLGLKPRTREVARWREERTPREALEALSE--RLYSFTQGLPEPVHARVME 232

Query: 231 NVIENFRRAWNEDGQSRKVVRFPIYLRIGKVG 262
            +   +  A   D      V     LR+ ++G
Sbjct: 233 RL-WAWAEAELGDLDRPFPVEKRFLLRVSRLG 263

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 57.8 bits (140), Expect = 5e-10
 Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 16/149 (10%)

Query: 9   AKQY---AETRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSP 65
           A  Y         Y E+L + +  +     L  D+G G+GQ    ++     V+GT+ + 
Sbjct: 32  ATLYQDKHSFVWQYGEDLLQLLNPQPGEFIL--DLGCGTGQLTEKIAQSGAEVLGTDNAA 89

Query: 66  KQIEFA-TKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVK 123
             IE A    P++ +++                   +D V     +HW  +       + 
Sbjct: 90  TMIEKARQNYPHLHFDV----ADARNFR----VDKPLDAVFSNAMLHWVKEPEAAIASIH 141

Query: 124 WVLKKPNGVIATWCYTVPEVNVSVDAVFQ 152
             L K  G           +   ++A++ 
Sbjct: 142 QAL-KSGGRFVAEFGGKGNIKYILEALYN 169

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 55.4 bits (134), Expect = 9e-10
 Identities = 23/127 (18%), Positives = 44/127 (34%), Gaps = 15/127 (11%)

Query: 20  PEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRY 79
           PEE    I        +  D G G+G     L      +   + +   ++   +    ++
Sbjct: 6   PEEYLPNIFEGKKGVIV--DYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKE----KF 59

Query: 80  ELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNG--VIATW 136
           +         E+  N     +VD +  A + H   D     ++VK +L K +G  +I  W
Sbjct: 60  DSVITLSDPKEIPDN-----SVDFILFANSFHDMDDKQHVISEVKRIL-KDDGRVIIIDW 113

Query: 137 CYTVPEV 143
                 +
Sbjct: 114 RKENTGI 120

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 56.4 bits (136), Expect = 9e-10
 Identities = 31/181 (17%), Positives = 67/181 (37%), Gaps = 23/181 (12%)

Query: 39  DVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL---PNIRYELTSPAMSIAELEQNV 95
           DVG G G     LS      +G + S   I+   +    P++ +        ++ L    
Sbjct: 59  DVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERGEGPDLSFIK----GDLSSLP--- 111

Query: 96  AAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNG--VIATWCYTVPEVNVSVDAVFQ 152
                 + +    ++ W  +  +  N++K VL K +G   IA    T      S   ++ 
Sbjct: 112 FENEQFEAIMAINSLEWTEEPLRALNEIKRVL-KSDGYACIAILGPTAKPRENSYPRLYG 170

Query: 153 PFYTVDSDPFWEPQRKLVDNKYMTIDFPFEPVDGADSTGP--FDRFVIEKTMDLEGYFSY 210
                ++   WE ++ + +         F+ VDG         ++ + + + DL+   ++
Sbjct: 171 KDVVCNTMMPWEFEQLVKEQ-------GFKVVDGIGVYKRGVNEKMLGQLSTDLQQSLTF 223

Query: 211 I 211
           +
Sbjct: 224 L 224

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 53.9 bits (129), Expect = 8e-09
 Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 9/102 (8%)

Query: 39  DVGTGSGQAAASLSGIFENVIGTETSPKQIEFA---TKLPNIRYELTSPAMSIAELEQNV 95
           D   G+G     LS  F  VIG + S   +E A       NI Y L      + E    +
Sbjct: 62  DFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTAANISYRLL--DGLVPEQAAQI 119

Query: 96  AAQSTVDLVTIAQAMHWFDLPQ---FYNQVKWVLKKPNGVIA 134
            ++     + +    H   + +       ++ +L    G + 
Sbjct: 120 HSEIGDANIYMRTGFHHIPVEKRELLGQSLRILL-GKQGAMY 160

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 53.7 bits (129), Expect = 8e-09
 Identities = 15/97 (15%), Positives = 37/97 (38%), Gaps = 6/97 (6%)

Query: 39  DVGTGSGQAAASLSGIFENVIGTETSPKQIEFA-TKLPNIRYELTSPAMSIAELEQNVAA 97
           D+G G G    +L+      +G +     ++ A        +  +   ++ A++      
Sbjct: 58  DLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKV----PV 113

Query: 98  QSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIA 134
               DL+    A+   D+ +  + ++ +L  P G + 
Sbjct: 114 GKDYDLICANFALLHQDIIELLSAMRTLL-VPGGALV 149

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 52.2 bits (125), Expect = 2e-08
 Identities = 23/143 (16%), Positives = 50/143 (34%), Gaps = 19/143 (13%)

Query: 1   MAELFIKQAKQYAETRPNYPEE----LFKFITSKTTNHELAWDVGTGSGQAAASLSGIFE 56
               +  +A +Y  T   Y +       + + +     ++  ++ +G+G     LSG+ +
Sbjct: 11  QLSYYRARASEYDATFVPYMDSAAPAALERLRAGNIRGDVL-ELASGTGYWTRHLSGLAD 69

Query: 57  NVIGTETSPKQIEFATK--LPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF- 113
            V   + S + I  A +  L N+ +        + +           D V  A  +    
Sbjct: 70  RVTALDGSAEMIAEAGRHGLDNVEFRQ----QDLFDWT----PDRQWDAVFFAHWLAHVP 121

Query: 114 --DLPQFYNQVKWVLKKPNGVIA 134
                 F+  V+  +  P GV+ 
Sbjct: 122 DDRFEAFWESVRSAV-APGGVVE 143

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 51.1 bits (122), Expect = 6e-08
 Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 18/111 (16%)

Query: 39  DVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL-----PNIRYELTSPAMSIAELEQ 93
           D+  G G  +  L      V+G + S   I  A +       N+ + +   A  +   E 
Sbjct: 44  DLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGD-ARKL-SFED 101

Query: 94  NVAAQSTVDLVTIAQAMHWF---DLPQFYNQVKWVLKKPNG--VIATWCYT 139
                 T D V    ++  F   +L Q + +V+ VL KP+G  ++      
Sbjct: 102 K-----TFDYVIFIDSIVHFEPLELNQVFKEVRRVL-KPSGKFIMYFTDLR 146

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 50.6 bits (121), Expect = 7e-08
 Identities = 26/149 (17%), Positives = 44/149 (29%), Gaps = 26/149 (17%)

Query: 1   MAELFIKQAKQYAETRPNYP----------EELFKFITSKTTNHELAWDVGTGSGQAAAS 50
              LF + A  Y                  E++ + + +K+  + L  + G G+G     
Sbjct: 5   FNGLFDEWAHTYDSFVQGEDIQYKEVFAHYEDILEDVVNKSFGNVL--EFGVGTGNLTNK 62

Query: 51  LSGIFENVIGTETSPKQIEFA-TKLP-NIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ 108
           L      V G E S +    A  KLP                 E      +++D +    
Sbjct: 63  LLLAGRTVYGIEPSREMRMIAKEKLPKEFSITE----GDFLSFEVP----TSIDTIVSTY 114

Query: 109 AMHWF---DLPQFYNQVKWVLKKPNGVIA 134
           A H     +      +   +L    G I 
Sbjct: 115 AFHHLTDDEKNVAIAKYSQLL-NKGGKIV 142

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 49.0 bits (117), Expect = 3e-07
 Identities = 34/187 (18%), Positives = 53/187 (28%), Gaps = 40/187 (21%)

Query: 39  DVGTGSGQAAASLSGIF-ENVIGTETSPKQIEFATKL---PNIRYELTSPAMSIAELEQN 94
           D+G G G             V+G + S K +  A        I YE        A+L++ 
Sbjct: 49  DLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTGITYER-------ADLDKL 101

Query: 95  VAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQP 153
              Q + DL   + A+H+  D+ + +  V   L  P G               V +   P
Sbjct: 102 HLPQDSFDLAYSSLALHYVEDVARLFRTVHQAL-SPGGHF-------------VFSTEHP 147

Query: 154 FYTVDSDPFWEPQRKLVDNKYMTIDFPFEPVDGADSTGPFDRFVIEKTMDLEGYFSYIRS 213
            Y   + P W         +   ID                           G   + R+
Sbjct: 148 IYMAPARPGW--AIDAEGRRTWPIDRYLVEGPRKTDWLAK------------GVVKHHRT 193

Query: 214 WSAYQTA 220
                 A
Sbjct: 194 VGTTLNA 200

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 49.0 bits (117), Expect = 3e-07
 Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 20/124 (16%)

Query: 39  DVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELE 92
           D+G G+G  A + S   +  IG + + + +E A+       + N+R++    A S+    
Sbjct: 27  DIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQ-GTAESL-PFP 84

Query: 93  QNVAAQSTVDLVTIAQA-MHWFDLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVF 151
            +     + D++T   A  H+ D+ +   +V  VL K +G        + +     D V 
Sbjct: 85  DD-----SFDIITCRYAAHHFSDVRKAVREVARVL-KQDGRFL-----LVDHYAPEDPVL 133

Query: 152 QPFY 155
             F 
Sbjct: 134 DEFV 137

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 48.3 bits (115), Expect = 5e-07
 Identities = 18/109 (16%), Positives = 43/109 (39%), Gaps = 17/109 (15%)

Query: 37  AWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFA----TKLPNIRYELTSPAMSIAELE 92
             ++G  +G     L+   + +   +  P+ I  A     +  +I +          ++ 
Sbjct: 55  GLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSHISWAA-------TDIL 107

Query: 93  QNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLK--KPNG--VIATW 136
           Q   A+   DL+ +A+ +++  D+ Q    +  ++K   P G  V  + 
Sbjct: 108 QFSTAEL-FDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSA 155

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215

 Score = 48.1 bits (114), Expect = 6e-07
 Identities = 21/140 (15%), Positives = 43/140 (30%), Gaps = 25/140 (17%)

Query: 2   AELFIKQAKQYAETRPNYPEELFKFITS---KTTNHELAWDVGTGSGQAAASLSGIFENV 58
            E F+   + +      +P +    I     +     +  D G G  + A+S+       
Sbjct: 33  PEAFLLYHRGFQSQVKKWPLQPVDRIARDLRQRPASLVVADFGCGDCRLASSIRNPVHCF 92

Query: 59  IGTETSPKQIEF-ATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQ 117
                 P+       ++P               LE       +VD+     ++   ++  
Sbjct: 93  DLASLDPRVTVCDMAQVP---------------LEDE-----SVDVAVFCLSLMGTNIRD 132

Query: 118 FYNQVKWVLKKPNGVIATWC 137
           F  +   VL KP G++    
Sbjct: 133 FLEEANRVL-KPGGLLKVAE 151

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 47.6 bits (113), Expect = 1e-06
 Identities = 29/187 (15%), Positives = 55/187 (29%), Gaps = 39/187 (20%)

Query: 39  DVGTGSGQAAASLSG-IFENVIGTETSPKQIEFATKL---PNIRYELTSPAMSIAELEQN 94
           D+G G G      +    + V+G + S + +  A +    P + YE          +E  
Sbjct: 50  DLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQ-------KAIEDI 102

Query: 95  VAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQP 153
                  ++V  + A+H+         +V   L K +G               + +V  P
Sbjct: 103 AIEPDAYNVVLSSLALHYIASFDDICKKVYINL-KSSGSF-------------IFSVEHP 148

Query: 154 FYTVDSDPFWEPQRKLVDNKYMTIDFPFEPVDGADSTGPFDRFVIEKTMDLEGYFSYIRS 213
            +T D    W          +    +             F+  +       E    Y R+
Sbjct: 149 VFTADGRQDWYTDETGNKLHWPVDRY-------------FNESMRTSHFLGEDVQKYHRT 195

Query: 214 WSAYQTA 220
            + Y   
Sbjct: 196 VTTYIQT 202

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 47.6 bits (113), Expect = 1e-06
 Identities = 31/244 (12%), Positives = 74/244 (30%), Gaps = 33/244 (13%)

Query: 39  DVGTGSGQAAASLSGIFEN--VIGTETSPKQIEFATK------LPNIRYELTSPAMSIAE 90
           + G G G     L+    +  +   + SP+ +E A +      + N+++       +I  
Sbjct: 43  EAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQ----ANIFS 98

Query: 91  LEQNVAAQSTVDLVTIAQA-MHWFDLPQFYNQVKWVLKKPNG--VIATWCY---TVPEVN 144
           L       S+ D + +     H     +    +K VL KP G   +    +         
Sbjct: 99  LPF---EDSSFDHIFVCFVLEHLQSPEEALKSLKKVL-KPGGTITVIEGDHGSCYFHPEG 154

Query: 145 VSVDAVFQPFYTVDSDPFWEP--QRKLVDNKYMTIDFPFEPVDGADSTGPFDRFVIEKTM 202
                 +     V +         R++     +  +  FE +         D     K  
Sbjct: 155 KKAIEAWNCLIRVQAYMKGNSLVGRQIYP---LLQESGFEKIRVEPRMVYIDSS---KPE 208

Query: 203 DLEGYFSYIRSWSAYQTAKDKGVE--LLTENVIENFRRAWNEDGQSRKVVRFPIYLRIGK 260
            ++G+          +  K++ ++  ++ E   E      ++  +      +  +   G 
Sbjct: 209 LVDGFILKTIIP-MVEGVKEQSLKMQIIKEEEWEKGIEELHKTAEHGGTFCYTFFKGWGT 267

Query: 261 VGNN 264
              +
Sbjct: 268 KEGH 271

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 28/146 (19%), Positives = 52/146 (35%), Gaps = 22/146 (15%)

Query: 39  DVGTGSGQAAASLSGIFENVIGTETSPKQIEFA-TKLPNIRYELTSPAMSIAELEQNVAA 97
           D G G G+    LS    +V+GT+  P  I++A    P  R+ +      ++  +    +
Sbjct: 52  DAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFPEARWVV----GDLSVDQ---IS 104

Query: 98  QSTVDLVTIAQAMHWF----DLPQFYNQVKWVLKKPNG--VIATWC---YTVPEVNVSVD 148
           ++  DL+  A  +  F            +   L   +G  VI       +   +     +
Sbjct: 105 ETDFDLIVSAGNVMGFLAEDGREPALANIHRAL-GADGRAVIGFGAGRGWVFGDFLEVAE 163

Query: 149 A----VFQPFYTVDSDPFWEPQRKLV 170
                +   F + D  PF +    LV
Sbjct: 164 RVGLELENAFESWDLKPFVQGSEFLV 189

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 23/124 (18%), Positives = 42/124 (33%), Gaps = 20/124 (16%)

Query: 39  DVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELE 92
           DV TG G  A + +   + V+  + +   ++ A           + Y     A  +    
Sbjct: 43  DVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQ-GDAEQM-PFT 100

Query: 93  QNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVF 151
                     +VT   A H F +   F ++   VL K  G +      + + +   +  F
Sbjct: 101 DE-----RFHIVTCRIAAHHFPNPASFVSEAYRVL-KKGGQLL-----LVDNSAPENDAF 149

Query: 152 QPFY 155
             FY
Sbjct: 150 DVFY 153

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 46.6 bits (110), Expect = 4e-06
 Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 20/114 (17%)

Query: 39  DVGTGSGQ---AAASLSGIFENVIGTETSPKQIEFATK--------------LPNIRYEL 81
           D+G G+G+    A+ L G    VIG +    Q+E A K                N+R+ L
Sbjct: 89  DLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRF-L 147

Query: 82  TSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIA 134
                ++A  E      S+VD+V      +   +    + ++  VL +  G + 
Sbjct: 148 KGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVL-RDGGELY 200

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 45.9 bits (109), Expect = 4e-06
 Identities = 30/215 (13%), Positives = 71/215 (33%), Gaps = 44/215 (20%)

Query: 39  DVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL----PNIRYELTSPAMSIAELEQ 93
           D+G+G G     ++  +  +  G +     +  A +       I +E     ++  E  +
Sbjct: 61  DIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEAND-ILTK-EFPE 118

Query: 94  NVAAQSTVDLVTIAQAM----HWFDLPQFYNQVKWVLKKPNG--VIATWCYTVPEVNVSV 147
           N       DL+  ++         +  + + +    L KP G  +I  +C T        
Sbjct: 119 N-----NFDLI-YSRDAILALSLENKNKLFQKCYKWL-KPTGTLLITDYCAT-------- 163

Query: 148 DAVFQPFYTVDSDPFWEPQRKLVDNKYMTIDFPFEPVDGADSTGPFDRFVIEKTMDL-EG 206
                     + + + +  ++ V  +  T+    E  D   +      F    + DL + 
Sbjct: 164 ----------EKENWDDEFKEYVKQRKYTLITVEEYADILTACN----FKNVVSKDLSDY 209

Query: 207 YFSYIRSW-SAYQTAKDKGVELLTENVIENFRRAW 240
           +   +          K++ ++L +E    +    W
Sbjct: 210 WNQLLEVEHKYLHENKEEFLKLFSEKKFISLDDGW 244

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score = 45.9 bits (109), Expect = 4e-06
 Identities = 35/215 (16%), Positives = 66/215 (30%), Gaps = 40/215 (18%)

Query: 39  DVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAE 90
           DVG G G+ A  L+   +  V G   S  Q+  A            + +     AM +  
Sbjct: 67  DVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYAD-AMDL-P 124

Query: 91  LEQNVAAQSTVDLV-TIAQAMHWFDLPQFYNQVKWVLKKPNG--VIATWCYTVPEVNVSV 147
            E       + D V  +    H  D  +   ++  VL +P G   IA +    P      
Sbjct: 125 FEDA-----SFDAVWALESLHHMPDRGRALREMARVL-RPGGTVAIADFVLLAPVEGAKK 178

Query: 148 DAVFQPFYTVDSDPFWEPQRKLVDNKYMTIDFPFEPVDGADSTGPFDRFVIEKTMDLEGY 207
           +AV   F             +   +                        V+  T+D+   
Sbjct: 179 EAV-DAFRAGGGVLSLGGIDEYESD--------------VRQAE----LVVTSTVDISAQ 219

Query: 208 F--SYIRSWSAYQTAKDKGVELLTENVIENFRRAW 240
              S +++  A++ A+ +    +    ++     +
Sbjct: 220 ARPSLVKTAEAFENARSQVEPFMGAEGLDRMIATF 254

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 31/213 (14%), Positives = 54/213 (25%), Gaps = 39/213 (18%)

Query: 39  DVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAE 90
           D+G G G AA  L   F  ++     +P Q +   +         NI  +  S  + I  
Sbjct: 88  DLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGS-FLEI-P 145

Query: 91  LEQNVAAQSTVDLVTIAQA-MHWFDLPQFYNQVKWVLKKPNG--VIATWCYTVPEVNVSV 147
            E N     + D +    A +H  D  + + +   VL KP G   I              
Sbjct: 146 CEDN-----SYDFIWSQDAFLHSPDKLKVFQECARVL-KPRGVMAITDPMKEDGI----D 195

Query: 148 DAVFQPFYTVDSDPFWEPQRKLVDNKYMTIDFPFEPVDGADSTGPFDRFVIEKTMDLEGY 207
            +  QP                     +  +     +                       
Sbjct: 196 KSSIQPILDRIKLHDMGSLGLYRS---LAKECGLVTLRTFSRPDSLVHH----------- 241

Query: 208 FSYIRSWSAYQTAKDKGVELLTENVIENFRRAW 240
             Y +  +       +     +     N +R  
Sbjct: 242 --YSKVKAELIKRSSEIASFCSPEFQANMKRGL 272

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 15/128 (11%)

Query: 11  QYAETRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFEN--VIGTETSPKQI 68
           ++ + R     +L   +  +   +    D+G G G +   L+  +    + G ++    +
Sbjct: 13  KFEDERTRPARDLLAQVPLERVLNGY--DLGCGPGNSTELLTDRYGVNVITGIDSDDDML 70

Query: 69  EFA-TKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVL 126
           E A  +LPN  +         A+L     AQ   DL+       W  D     +Q+   L
Sbjct: 71  EKAADRLPNTNFGK-------ADLATWKPAQK-ADLLYANAVFQWVPDHLAVLSQLMDQL 122

Query: 127 KKPNGVIA 134
            +  GV+A
Sbjct: 123 -ESGGVLA 129

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 21/135 (15%), Positives = 45/135 (33%), Gaps = 7/135 (5%)

Query: 39  DVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKLPNIRYELTSPA-MSIAELEQNVA 96
           D+G G+G     L+   +  + G +  P  IE   +   ++             ++    
Sbjct: 52  DIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNEN-AVKANCADRVKGITGSMDNLPF 110

Query: 97  AQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIAT--WCYTVPEVNVSVDAVFQPF 154
               +DL+    A++     +  N+    L K  G IA     +   E    ++  +   
Sbjct: 111 QNEELDLIWSEGAIYNIGFERGMNEWSKYL-KKGGFIAVSEASWFTSERPAEIEDFWMDA 169

Query: 155 Y-TVDSDPFWEPQRK 168
           Y  +   P    + +
Sbjct: 170 YPEISVIPTCIDKME 184

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 16/100 (16%), Positives = 40/100 (40%), Gaps = 12/100 (12%)

Query: 39  DVGTGSGQAAASLSGIFENVIGTETSPKQIEFA-TKLPNIRYELTSPAMSIAELEQNVAA 97
           DVG+G+G+    L+ +   + G E + + +E A    P++ +       +I +L     +
Sbjct: 47  DVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTHPSVTFHH----GTITDLS---DS 99

Query: 98  QSTVDLVTIAQAMHWF---DLPQFYNQVKWVLKKPNGVIA 134
                 +    ++      +LP     ++  + +  G + 
Sbjct: 100 PKRWAGLLAWYSLIHMGPGELPDALVALRMAV-EDGGGLL 138

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 21/137 (15%), Positives = 40/137 (29%), Gaps = 16/137 (11%)

Query: 1   MAELFIKQAKQYAETRPNYPEELFKFI--TSKTTNHELAWDVGTGSGQAAASLSGIFENV 58
           M  +F +   +Y      +       +             ++G G+G+ A  L       
Sbjct: 13  MWHIFERFVNEYERWFLVHRFAYLSELQAVKCLLPEGRGVEIGVGTGRFAVPLK----IK 68

Query: 59  IGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQ 117
           IG E S +  E A K   +              E       + D   +   + +  D  +
Sbjct: 69  IGVEPSERMAEIARK-RGVFVL-------KGTAENLPLKDESFDFALMVTTICFVDDPER 120

Query: 118 FYNQVKWVLKKPNGVIA 134
              +   +L K  G + 
Sbjct: 121 ALKEAYRIL-KKGGYLI 136

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 23/137 (16%), Positives = 42/137 (30%), Gaps = 23/137 (16%)

Query: 39  DVGTGSGQAAASLSGIFEN--VIGTETSPKQIEFA----TKLPNIRYELTSPAMSIAELE 92
           D+G G+G  +A L   +        + S K +E A         ++Y             
Sbjct: 50  DLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADY-------- 101

Query: 93  QNVAAQSTVDLVTIAQAMHWF---DLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDA 149
                +   D+V  A ++H     D  + Y +   +L K +G+         E      A
Sbjct: 102 SKYDFEEKYDMVVSALSIHHLEDEDKKELYKRSYSIL-KESGIFINADLVHGE-----TA 155

Query: 150 VFQPFYTVDSDPFWEPQ 166
             +         + E  
Sbjct: 156 FIENLNKTIWRQYVENS 172

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 18/125 (14%), Positives = 34/125 (27%), Gaps = 16/125 (12%)

Query: 12  YAETRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFA 71
           +    P        F         L  ++G+  G   + L   F ++   E S + I  A
Sbjct: 26  FDVMHPFMVRAFTPFFRPGNL---L--ELGSFKGDFTSRLQEHFNDITCVEASEEAISHA 80

Query: 72  TK--LPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAM-HWFDLPQFYNQVKWVLKK 128
                  I Y        I    ++       D + +   + H  D      ++      
Sbjct: 81  QGRLKDGITY--------IHSRFEDAQLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLA 132

Query: 129 PNGVI 133
             G +
Sbjct: 133 EGGRL 137

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 42.6 bits (100), Expect = 5e-05
 Identities = 18/98 (18%), Positives = 37/98 (37%), Gaps = 4/98 (4%)

Query: 39  DVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKLPNIRYELTSPA-MSIAELEQNVA 96
           D+G G+G     L+G     V G +     I+   +    +  L +     +  ++    
Sbjct: 52  DIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRN-ARQSGLQNRVTGIVGSMDDLPF 110

Query: 97  AQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIA 134
               +DL+    A++     +  N+ +  L K  G +A
Sbjct: 111 RNEELDLIWSEGAIYNIGFERGLNEWRKYL-KKGGYLA 147

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 42.6 bits (100), Expect = 6e-05
 Identities = 14/105 (13%), Positives = 27/105 (25%), Gaps = 18/105 (17%)

Query: 39  DVGTGSGQAAASLSGIFE---NVIGTETSPKQIEFATKL-----PNIRYELTSPAMSIAE 90
           D G G G     L  +        G ++    +  A +L      +  +          E
Sbjct: 28  DYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLE----GDATE 83

Query: 91  LEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIA 134
           +E         D+      +           ++   + K  G I 
Sbjct: 84  IE----LNDKYDIAICHAFLLHMTTPETMLQKMIHSV-KKGGKII 123

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 41.7 bits (98), Expect = 8e-05
 Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 19/114 (16%)

Query: 39  DVGTGSGQAAASLSGIF-ENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAE 90
           D+G+G G  + +L+     ++   + S    E A K          I+        +I  
Sbjct: 49  DIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGD-VHNI-P 106

Query: 91  LEQNVAAQSTVDLVTIAQA-MHWFDLPQFYNQVKWVLKKPNG--VIATWCYTVP 141
           +E N       DL+    +   W D+   + ++  +L K  G   I        
Sbjct: 107 IEDN-----YADLIVSRGSVFFWEDVATAFREIYRIL-KSGGKTYIGGGFGNKE 154

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 26/97 (26%), Positives = 36/97 (37%), Gaps = 10/97 (10%)

Query: 39  DVGTGSGQAAASLSGIFENVIGTETSPKQIEFA-TKLPNIRYELTSPAMSIAELEQNVAA 97
           D+G  SG   A++      V G E  P+  E A  KL ++            E       
Sbjct: 38  DIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKLDHVVLG-------DIETMDMPYE 90

Query: 98  QSTVDLVTIAQAM-HWFDLPQFYNQVKWVLKKPNGVI 133
           +   D V     + H FD      +VK  + K NGVI
Sbjct: 91  EEQFDCVIFGDVLEHLFDPWAVIEKVKPYI-KQNGVI 126

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 22/106 (20%), Positives = 35/106 (33%), Gaps = 10/106 (9%)

Query: 39  DVGTGSGQAAASL--SGIFENVIGTETSPKQIEFA----TKLPNIRYELTSPAMSIAELE 92
           D+G G G     L     FE + G + S + +E A     +L   R +     +    L 
Sbjct: 35  DLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALT 94

Query: 93  QNVAAQSTVDLVTIAQAMHWF---DLPQFYNQVKWVLKKPNGVIAT 135
                    D  T+ + +       L  F   +     +P  VI T
Sbjct: 95  YQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFA-QPKIVIVT 139

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 8/105 (7%)

Query: 39  DVGTGSGQAAASLSGI--FENVIGTETSPKQIEFATK----LPNIRYELTSPAMSIAELE 92
           D+G G G   + L     FE + G + S   +E A            +    ++  + L 
Sbjct: 35  DLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLV 94

Query: 93  QNVAAQSTVDLVTIAQAMHWFDLPQF--YNQVKWVLKKPNGVIAT 135
                 S  D  T+ + +   D  +   + +V +   +P  VI +
Sbjct: 95  YRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVS 139

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 12/99 (12%)

Query: 39  DVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQ 98
           ++G G+G  A ++     +V  T+ SP+    A++            M   +L+    A 
Sbjct: 49  ELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRLGRPVRT----MLFHQLD----AI 100

Query: 99  STVDLVTIAQAMHWF---DLPQFYNQVKWVLKKPNGVIA 134
              D V     +      +L      +   L KP G+  
Sbjct: 101 DAYDAVWAHACLLHVPRDELADVLKLIWRAL-KPGGLFY 138

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 18/112 (16%), Positives = 31/112 (27%), Gaps = 14/112 (12%)

Query: 39  DVGTGSG---QAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELT-SPAMSIAELEQN 94
           ++G G G      A   G   +V G + +         L      L   P      +  N
Sbjct: 49  EIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFN 108

Query: 95  VA--------AQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNG--VIATW 136
                     A    D V +A ++ +F        +   +        +A W
Sbjct: 109 TNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEW 160

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 38.9 bits (91), Expect = 8e-04
 Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 18/106 (16%)

Query: 39  DVGTGSGQ---AAASLSGIFENVIGTETSPKQIEFATK------LPNIRYELTSPAMSIA 89
           DVGTG+G      + + G    V   +   + + +A +      L N+   L S    I 
Sbjct: 43  DVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEV-LKSEENKI- 100

Query: 90  ELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIA 134
            L  N     TVD + +A   H   +  +F  ++K V  KP   +A
Sbjct: 101 PLPDN-----TVDFIFMAFTFHELSEPLKFLEELKRVA-KPFAYLA 140

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	265
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	100.0
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	100.0
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.95
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.91
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.89
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.88
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.87
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.82
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.81
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.8
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.79
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.79
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.79
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.79
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.78
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.77
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.77
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.77
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.76
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.76
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.76
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.76
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.76
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.76
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.76
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.75
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.75
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.75
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.74
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.74
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.74
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.74
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.73
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.73
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.73
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.73
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.73
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.73
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.72
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.72
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.72
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.72
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.71
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.71
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.71
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.71
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.71
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.7
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.7
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.7
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.7
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.69
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.69
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.69
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.69
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.69
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.68
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.68
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.68
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.68
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.67
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.67
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.67
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.67
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.67
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.67
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.66
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.66
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.66
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.66
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.65
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.65
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.65
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.65
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.64
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.64
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.64
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.64
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.64
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.63
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.63
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.63
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.63
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.62
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.62
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.62
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.62
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.61
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.61
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.61
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.6
3ocj_A	305	Putative exported protein; structural genomics, PS	99.6
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.6
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.6
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.6
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.59
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.59
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.59
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.59
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.59
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.59
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.59
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.59
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.58
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.58
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.58
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.57
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.57
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.56
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.56
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.55
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.55
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.55
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.55
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.55
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.54
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.54
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.54
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.53
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.53
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.53
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.53
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.52
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.52
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.52
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.52
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.52
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.52
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.51
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.5
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.5
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.5
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.5
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.5
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.5
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.49
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.49
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.49
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.49
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.49
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.49
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.49
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.49
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.48
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.48
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.48
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.48
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.48
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.48
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.48
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.47
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.47
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.47
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.47
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.47
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.47
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.46
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.46
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.46
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.46
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.46
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.46
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.46
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.46
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.46
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.46
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.45
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.45
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.45
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.45
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.45
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.44
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.44
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.44
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.44
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.44
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.44
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.43
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.43
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.43
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.43
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.43
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.43
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.43
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.42
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.42
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.41
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.41
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.4
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.4
2o07_A	304	Spermidine synthase; structural genomics, structur	99.4
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.4
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.4
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.4
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.39
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.39
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.39
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.39
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.39
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.38
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.38
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.38
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.38
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.38
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.37
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.37
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.37
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.37
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.37
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.37
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.36
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.35
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.35
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.34
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.33
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.33
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.32
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.32
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.31
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.31
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.3
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.3
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.29
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.28
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.26
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.26
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.25
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.25
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.25
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.24
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.24
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.22
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.22
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.22
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.21
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.21
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.2
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.2
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.19
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.19
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.18
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.16
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.16
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.16
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.16
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	99.15
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.14
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.12
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.11
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.1
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.07
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.06
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.05
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.04
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.04
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.03
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.97
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.97
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.93
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.92
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.91
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	98.9
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.9
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.9
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.87
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.87
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.87
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.85
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.84
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.77
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.74
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.73
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.72
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.71
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.71
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.71
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.7
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.7
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.7
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.62
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.59
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.53
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.51
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.46
3khk_A	544	Type I restriction-modification system methylation	98.46
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	98.4
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	98.39
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.36
3lkd_A	542	Type I restriction-modification system methyltrans	98.34
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.31
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.27
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.19
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	98.17
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	98.02
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	97.97
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.71
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	97.71
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.7
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.62
2oo3_A	283	Protein involved in catabolism of external DNA; st	97.42
3ufb_A	530	Type I restriction-modification system methyltran	97.3
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.29
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	97.2
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	97.11
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	97.11
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	97.1
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	97.06
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	97.02
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	96.92
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	96.83
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	96.82
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	96.8
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	96.79
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	96.77
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	96.76
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	96.72
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	96.71
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	96.7
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	96.68
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	96.65
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	96.6
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	96.55
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	96.53
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	96.52
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	96.49
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	96.48
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.46
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	96.37
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	96.36
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	96.34
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	96.33
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	96.32
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	96.32
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	96.29
3gms_A	340	Putative NADPH:quinone reductase; structural genom	96.29
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	96.26
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	96.25
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	96.25
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	96.22
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	96.13
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	96.12
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	96.02
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	95.95
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	95.94
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	95.93
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	95.9
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	95.88
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	95.88
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	95.84
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	95.81
4eye_A	342	Probable oxidoreductase; structural genomics, niai	95.66
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	95.61
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	95.55
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	95.46
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	95.41
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	95.29
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	95.23
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	95.19
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	95.03
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	94.91
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	94.91
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	94.88
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	94.81
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	94.79
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	94.75
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	94.66
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	94.63
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	94.28
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	94.11
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	94.09
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	94.07
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	93.95
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	93.93
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	93.89
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	93.8
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	93.73
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	93.38
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	93.34
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	93.23
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	93.03
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	92.96
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	92.91
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	92.86
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	92.76
3c85_A	183	Putative glutathione-regulated potassium-efflux S	92.76
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	92.56
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	92.45
3me5_A	482	Cytosine-specific methyltransferase; structural ge	92.32
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	92.1
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	92.01
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	91.36
2zig_A	297	TTHA0409, putative modification methylase; methylt	91.14
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	90.91
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	90.66
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	90.59
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	90.55
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	89.79
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	89.51
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	89.09
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	88.97
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	88.14
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	88.0
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	87.87
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	87.8
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	87.64
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	87.49
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	87.3
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	87.09
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	87.08
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	86.9
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	86.87
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	86.48
1id1_A	153	Putative potassium channel protein; RCK domain, E.	86.38
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	86.31
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	85.73
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	85.66
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	85.6
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	85.48
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	85.44
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	85.38
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	84.77
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	84.69
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	83.49
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	83.24
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	83.09
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	83.02
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	82.78
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	82.54
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	82.53
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	82.5
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	82.44
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	82.33
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	81.95
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	81.49
4g65_A	461	TRK system potassium uptake protein TRKA; structur	81.11
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	81.03
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	81.02
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	80.82
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	80.6
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	80.43

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=100.00  E-value=5.1e-47  Score=317.96  Aligned_cols=244  Identities=30%  Similarity=0.558  Sum_probs=211.8

Q ss_pred             hHHHHHHHHHhhhCCCCcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEec
Q 024647            3 ELFIKQAKQYAETRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELT   82 (265)
Q Consensus         3 ~~f~~~a~~Y~~~rp~y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~   82 (265)
                      ..|++.|+.|+++||.||++++++|....+...+|||||||+|.++..|++++.+|+|+|+|+.|++.|++.+++.+.+ 
T Consensus         9 d~F~~~a~~Y~~~Rp~yp~~l~~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~~~~v~~~~-   87 (257)
T 4hg2_A            9 DHFTPVADAYRAFRPRYPRALFRWLGEVAPARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALRHPRVTYAV-   87 (257)
T ss_dssp             -----------CCCCCCCHHHHHHHHHHSSCSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCCCTTEEEEE-
T ss_pred             HHHHHHHHHHHHHCCCcHHHHHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhhcCCceeeh-
Confidence            5799999999999999999999999999888889999999999999999999999999999999999999888999998 


Q ss_pred             CCccchhhhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHhhcccccCCCCCC
Q 024647           83 SPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQPFYTVDSDPF  162 (265)
Q Consensus        83 ~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (265)
                            ++++++++++++||+|+++.++||++++++++++.|+|| |||+|+++++......+.++.++++++...+.+|
T Consensus        88 ------~~~e~~~~~~~sfD~v~~~~~~h~~~~~~~~~e~~rvLk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (257)
T 4hg2_A           88 ------APAEDTGLPPASVDVAIAAQAMHWFDLDRFWAELRRVAR-PGAVFAAVTYGLTRVDPEVDAVVDRLYHGLLARD  160 (257)
T ss_dssp             ------CCTTCCCCCSSCEEEEEECSCCTTCCHHHHHHHHHHHEE-EEEEEEEEEECCCBCCHHHHHHHHHHHHTTTGGG
T ss_pred             ------hhhhhhcccCCcccEEEEeeehhHhhHHHHHHHHHHHcC-CCCEEEEEECCCCCCCHHHHHHHHHHHhcccccc
Confidence                  667888999999999999999999999999999999999 9999999998877778889999988887778899


Q ss_pred             cchhhhhhhhccCCCCCCCCCCCCCCCCCCCccceeeeccCHHHHHHHHHhhhHHHHHHHhCCccchHHHHHHHHHHhcc
Q 024647          163 WEPQRKLVDNKYMTIDFPFEPVDGADSTGPFDRFVIEKTMDLEGYFSYIRSWSAYQTAKDKGVELLTENVIENFRRAWNE  242 (265)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~l~~~~~~~l~~~~~~  242 (265)
                      |.|.+..+.+.|+.+.+||.+++..       .+.++..+++++++++++|+|.+..+.++..+.+.+++.+.+.+.|+.
T Consensus       161 ~~~~~~~~~~~y~~l~~pf~~~~~~-------~~~~~~~~tl~~~~~~l~T~S~~~~~~~~~~~d~l~~~~~~l~~~~g~  233 (257)
T 4hg2_A          161 WPPERVHVESGYRTLPFPFPELEAP-------PLEIEERWPMDAFLGYLGTWSAVTAHRRRTGADPLAEIAPALRAAWGT  233 (257)
T ss_dssp             CCSCCHHHHTTTTTSCCCSCEECCC-------CCEEEEEECHHHHHHHHTTSHHHHHHHHHHSSCHHHHHHHHHHHHHSS
T ss_pred             cchhhhHHHhhhhhCCCCCccceee-------EEEEEEEecHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHhcCC
Confidence            9999889999999999999887643       678889999999999999999999998876556666699999999986


Q ss_pred             CCCccEEEEEeeEEEEeecC
Q 024647          243 DGQSRKVVRFPIYLRIGKVG  262 (265)
Q Consensus       243 ~~~~~~~~~~~~~~~~ark~  262 (265)
                      .. ...+++|++++.+||++
T Consensus       234 ~~-~~~~v~~pi~l~~Grv~  252 (257)
T 4hg2_A          234 PE-RPLRVTWPIAIRAGRIL  252 (257)
T ss_dssp             TT-SCEEEEEEEEEEEEESS
T ss_pred             CC-cEEEEEEEEEEEEEEEC
Confidence            54 36899999999999974

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.7e-34  Score=242.93  Aligned_cols=246  Identities=24%  Similarity=0.472  Sum_probs=193.7

Q ss_pred             HHHHHhhhCCCCcHHHHHHHHhhC-CCCCeEEEEcCCcchhHHHHHh---cCCcEEEEcCCHHHHHHHHc--------CC
Q 024647            8 QAKQYAETRPNYPEELFKFITSKT-TNHELAWDVGTGSGQAAASLSG---IFENVIGTETSPKQIEFATK--------LP   75 (265)
Q Consensus         8 ~a~~Y~~~rp~y~~~l~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~---~~~~v~~vD~s~~~~~~a~~--------~~   75 (265)
                      .++.|++.||.||+++++.|.... .++.+|||||||+|..+..+++   .+.+|+|+|+|+.|++.|++        ..
T Consensus        10 ~~~~y~~~rp~y~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~   89 (299)
T 3g5t_A           10 NSERYSSSRPSYPSDFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYK   89 (299)
T ss_dssp             CHHHHHHHSCCCCHHHHHHHHHHCCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCT
T ss_pred             ChHHHhhcCCCCCHHHHHHHHHHhcCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCC
Confidence            578899999999999999999875 4678999999999999999995   45689999999999999875        35


Q ss_pred             CceEEecCCccchhhhhhccCCC------CceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecCCCCC--ChHH
Q 024647           76 NIRYELTSPAMSIAELEQNVAAQ------STVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTVPEV--NVSV  147 (265)
Q Consensus        76 ~~~~~~~~~~~~~~d~~~~~~~~------~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~--~~~~  147 (265)
                      ++.+.+       +|++++++++      ++||+|+++.++||+++..+++++.++|+ |||.|+++.+..+..  ...+
T Consensus        90 ~v~~~~-------~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~~~~~  161 (299)
T 3g5t_A           90 NVSFKI-------SSSDDFKFLGADSVDKQKIDMITAVECAHWFDFEKFQRSAYANLR-KDGTIAIWGYADPIFPDYPEF  161 (299)
T ss_dssp             TEEEEE-------CCTTCCGGGCTTTTTSSCEEEEEEESCGGGSCHHHHHHHHHHHEE-EEEEEEEEEEEEEECTTCGGG
T ss_pred             ceEEEE-------cCHHhCCccccccccCCCeeEEeHhhHHHHhCHHHHHHHHHHhcC-CCcEEEEEecCCccccCcHHH
Confidence            788888       5556666555      79999999999999999999999999999 999999977654332  2455


Q ss_pred             HHhhcccccC--CCCCCcc-hhhhhhhhccCCCCCCC---CCCCCCCCCC------------CCccceeeeccCHHHHHH
Q 024647          148 DAVFQPFYTV--DSDPFWE-PQRKLVDNKYMTIDFPF---EPVDGADSTG------------PFDRFVIEKTMDLEGYFS  209 (265)
Q Consensus       148 ~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~f---~~i~~~~~~~------------~~~~~~~~~~~~~~~~~~  209 (265)
                      ..++.++...  .+.|||. |....+.+.+...+||.   .+++......            ....+.....++++++.+
T Consensus       162 ~~~~~~~~~~~~~~~~~w~~p~~~~~~~~l~~~gfp~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (299)
T 3g5t_A          162 DDLMIEVPYGKQGLGPYWEQPGRSRLRNMLKDSHLDPELFHDIQVSYFCAEDVRDKVKLHQHTKKPLLIRKQVTLVEFAD  241 (299)
T ss_dssp             TTHHHHHHHCTTTTGGGSCTTHHHHHHTTTTTCCCCTTTEEEEEEEEECGGGGGCHHHHHHCSSCCCCCEEEECHHHHHH
T ss_pred             HHHHHHhccCcccccchhhchhhHHHHHhhhccCCChHHcCcceEEEecccccccccccccCCCCceeeeccccHHHHHH
Confidence            5555555433  4789998 88888899999999983   5553111000            011355688999999999


Q ss_pred             HHHhhhHHHHHHH--hCCc--cchHHHHHH-HHHHhccCCCccEEEEEeeEEEEeec
Q 024647          210 YIRSWSAYQTAKD--KGVE--LLTENVIEN-FRRAWNEDGQSRKVVRFPIYLRIGKV  261 (265)
Q Consensus       210 ~~~s~s~~~~~~~--~~~~--~l~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~ark  261 (265)
                      ++++||.+..+.+  +..+  .+.+++++. +.+..+......+.+.|++++.+|||
T Consensus       242 ~l~t~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~w~~~~~~~rk  298 (299)
T 3g5t_A          242 YVRTWSAYHQWKQDPKNKDKEDVADWFIKESLRRRPELSTNTKIEVVWNTFYKLGKR  298 (299)
T ss_dssp             HHTTSHHHHHHHHCGGGTTSCCHHHHHHHHHHHHCTTCCTTCCEEEEEEEEEEEEEE
T ss_pred             HHHHhHHHHHHHhcccCCchhhHHHHHHHHHHHhccCCCCCCEEEEEecceeeeEec
Confidence            9999999999988  5444  566668888 77754443223689999999999998

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.95  E-value=1.5e-27  Score=199.88  Aligned_cols=242  Identities=15%  Similarity=0.142  Sum_probs=166.4

Q ss_pred             ChhHHHHHHHHHhhhCCCCcHHHHHHHHhh-------CCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc
Q 024647            1 MAELFIKQAKQYAETRPNYPEELFKFITSK-------TTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK   73 (265)
Q Consensus         1 ~~~~f~~~a~~Y~~~rp~y~~~l~~~l~~~-------~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~   73 (265)
                      |...|+..+..|++.++ ++....+.+...       ..++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.+++
T Consensus         1 m~~~~~~~a~~y~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~   79 (263)
T 2yqz_A            1 MSSALLRAAYAYDRLRA-HPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQ   79 (263)
T ss_dssp             -CHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCchHHHHHHHhhhcc-cChHHHHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            78899999999999875 466665554433       3567899999999999999999998899999999999999875


Q ss_pred             C-----CCceEEecCCccchhhhhhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecCCC-C----
Q 024647           74 L-----PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTVP-E----  142 (265)
Q Consensus        74 ~-----~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~~-~----  142 (265)
                      .     +++.+..       +|++.+++++++||+|++..++||+ |+..+++++.++|+ |||.+++.....+ .    
T Consensus        80 ~~~~~~~~~~~~~-------~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~  151 (263)
T 2yqz_A           80 KIAGVDRKVQVVQ-------ADARAIPLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLK-PGGALLEGWDQAEASPEWT  151 (263)
T ss_dssp             HTTTSCTTEEEEE-------SCTTSCCSCTTCEEEEEEESCGGGCTTHHHHHHHHHHHEE-EEEEEEEEEEEECCCHHHH
T ss_pred             HhhccCCceEEEE-------cccccCCCCCCCeeEEEECCchhhcCCHHHHHHHHHHHCC-CCcEEEEEecCCCccHHHH
Confidence            3     5777777       6667777788899999999999999 89999999999999 9999987622221 1    


Q ss_pred             CChHHHHhhcccccCCCCCCcc-hhhhhhhhccCCCCCCCCCCCCCCCCCCCccceeeeccCHHHHHHHHHh--hhHHHH
Q 024647          143 VNVSVDAVFQPFYTVDSDPFWE-PQRKLVDNKYMTIDFPFEPVDGADSTGPFDRFVIEKTMDLEGYFSYIRS--WSAYQT  219 (265)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~s~~~~  219 (265)
                      +...+..++..... .....+. .....+.+.+...||  +.+..       ....+....+.+++.+++.+  ++.+..
T Consensus       152 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~Gf--~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (263)
T 2yqz_A          152 LQERWRAFAAEEGF-PVERGLHAKRLKEVEEALRRLGL--KPRTR-------EVARWREERTPREALEALSERLYSFTQG  221 (263)
T ss_dssp             HHHHHHHHHHHHTC-CCCCCHHHHHHHHHHHHHHHTTC--CCEEE-------EEEEEEEEECHHHHHHHHHTTCSGGGSS
T ss_pred             HHHHHHHHHHHhCC-CcccccccCCHHHHHHHHHHcCC--CcceE-------EEeeeecCCCHHHHHHHHHHhhcccccC
Confidence            11223333333221 0000111 112223344444443  32221       13456667789999998874  333322


Q ss_pred             HHHhCCccchHHHHHHHHHHhccCCCccEEEEEeeEEEEeecC
Q 024647          220 AKDKGVELLTENVIENFRRAWNEDGQSRKVVRFPIYLRIGKVG  262 (265)
Q Consensus       220 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ark~  262 (265)
                      +.+...+.+.+++.+.+.+.++... ..+.+.|.+++.+||||
T Consensus       222 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~rkp  263 (263)
T 2yqz_A          222 LPEPVHARVMERLWAWAEAELGDLD-RPFPVEKRFLLRVSRLG  263 (263)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHSSCTT-SCEEEEEEEEEEEEECC
T ss_pred             CCHHHHHHHHHHHHHHHHHhcCCcC-ccccccceeEEEeeecC
Confidence            3333344555557777777776433 35899999999999997

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.91  E-value=4.3e-24  Score=180.84  Aligned_cols=232  Identities=16%  Similarity=0.222  Sum_probs=143.4

Q ss_pred             HHHHhh---hCCCCcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc-CCCceEEecCC
Q 024647            9 AKQYAE---TRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK-LPNIRYELTSP   84 (265)
Q Consensus         9 a~~Y~~---~rp~y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~   84 (265)
                      +..|++   ..+.+...+++.+.  ..++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.+++ .+++.+..   
T Consensus        32 a~~y~~~~~~~~~~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~---  106 (279)
T 3ccf_A           32 ATLYQDKHSFVWQYGEDLLQLLN--PQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNYPHLHFDV---  106 (279)
T ss_dssp             ---------CCSSSCCHHHHHHC--CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTSCEEE---
T ss_pred             HHHHhhcchHHHHHHHHHHHHhC--CCCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhCCCCEEEE---
Confidence            456665   33344555555552  2466799999999999999999988899999999999999876 36788887   


Q ss_pred             ccchhhhhhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHhh----ccccc---
Q 024647           85 AMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVF----QPFYT---  156 (265)
Q Consensus        85 ~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~----~~~~~---  156 (265)
                          +|++.+++ +++||+|++..++||+ |+..+++++.++|+ |||.+++..+..... ..+...+    .....   
T Consensus       107 ----~d~~~~~~-~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  179 (279)
T 3ccf_A          107 ----ADARNFRV-DKPLDAVFSNAMLHWVKEPEAAIASIHQALK-SGGRFVAEFGGKGNI-KYILEALYNALETLGIHNP  179 (279)
T ss_dssp             ----CCTTTCCC-SSCEEEEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEECTTTT-HHHHHHHHHHHHHHTCCCG
T ss_pred             ----CChhhCCc-CCCcCEEEEcchhhhCcCHHHHHHHHHHhcC-CCcEEEEEecCCcch-HHHHHHHHHHHHhcCCccc
Confidence                56677765 5799999999999998 89999999999999 999999877654332 2222222    21110   


Q ss_pred             CCCCCCcchhhhhhhhccCCCCCCCCCCCCCCCCCCCccceeeecc--CHHHHHHHHHhhhH--HHHHHHhCCccchHHH
Q 024647          157 VDSDPFWEPQRKLVDNKYMTIDFPFEPVDGADSTGPFDRFVIEKTM--DLEGYFSYIRSWSA--YQTAKDKGVELLTENV  232 (265)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~s~--~~~~~~~~~~~l~~~~  232 (265)
                      ....++.......+.+.+...|  |+.+...       .+.....+  +.+.+..++.+++.  +..+.+...+.+.+.+
T Consensus       180 ~~~~~~~~~~~~~~~~~l~~aG--f~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  250 (279)
T 3ccf_A          180 QALNPWYFPSIGEYVNILEKQG--FDVTYAA-------LFNRPTTLAEGEFGMANWIQMFASAFLVGLTPDQQVQLIRKV  250 (279)
T ss_dssp             GGGCCCCCCCHHHHHHHHHHHT--EEEEEEE-------EEECCEECSSGGGHHHHHHHHHCHHHHTTCCHHHHHHHHHHH
T ss_pred             cCcCceeCCCHHHHHHHHHHcC--CEEEEEE-------EecccccccCCHHHHHHHHHHhhHHHhccCCHHHHHHHHHHH
Confidence            0011111111122233333333  3222210       11112222  35677777776532  2222223334455556


Q ss_pred             HHHHHHHhccCCCccEEEEEeeEEEEeecCC
Q 024647          233 IENFRRAWNEDGQSRKVVRFPIYLRIGKVGN  263 (265)
Q Consensus       233 ~~~l~~~~~~~~~~~~~~~~~~~~~~ark~~  263 (265)
                      .+.+.+.+..++  .+..+|..++++||||.
T Consensus       251 ~~~~~~~~~~~g--~~~~~~~~~~v~a~Kp~  279 (279)
T 3ccf_A          251 EATLQDKLYHQE--SWTADYRRIRIVSIKAQ  279 (279)
T ss_dssp             HHHHHHHHEETT--EEEECCEEEEEEEEEC-
T ss_pred             HHHHHhhccCCC--cEEEEEEEEEEEEecCC
Confidence            666666555544  68999999999999973

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.89  E-value=1.2e-22  Score=169.72  Aligned_cols=232  Identities=17%  Similarity=0.235  Sum_probs=147.5

Q ss_pred             HHHHhhhCCCCcHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhc--CCcEEEEcCCHHHHHHHHc-CCCceEEecC
Q 024647            9 AKQYAETRPNYPEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGI--FENVIGTETSPKQIEFATK-LPNIRYELTS   83 (265)
Q Consensus         9 a~~Y~~~rp~y~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~   83 (265)
                      +..|++........ ...+....  .++.+|||+|||+|.++..+++.  ..+|+|+|+|+.|++.+++ .+++.+..  
T Consensus         8 ~~~y~~~~~~~~~~-~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~--   84 (259)
T 2p35_A            8 AQQYLKFEDERTRP-ARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGK--   84 (259)
T ss_dssp             CGGGBCCCCGGGHH-HHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEE--
T ss_pred             HHHHHHHHHHHHHH-HHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEE--
Confidence            67788766654333 33444443  45678999999999999999988  6789999999999999876 46788887  


Q ss_pred             CccchhhhhhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecCCCCC--ChHHHHhhcc-----cc
Q 024647           84 PAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTVPEV--NVSVDAVFQP-----FY  155 (265)
Q Consensus        84 ~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~--~~~~~~~~~~-----~~  155 (265)
                           +|+++++ ++++||+|+++.++||+ ++..+++++.++|+ |||.+++..+.....  ...+..+...     ..
T Consensus        85 -----~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (259)
T 2p35_A           85 -----ADLATWK-PAQKADLLYANAVFQWVPDHLAVLSQLMDQLE-SGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAF  157 (259)
T ss_dssp             -----CCTTTCC-CSSCEEEEEEESCGGGSTTHHHHHHHHGGGEE-EEEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC
T ss_pred             -----CChhhcC-ccCCcCEEEEeCchhhCCCHHHHHHHHHHhcC-CCeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHh
Confidence                 5667776 67899999999999999 89999999999999 999999877643211  1112222211     11


Q ss_pred             cC---CCCCCcchhhhhhhhccCCCCCCCCCCCCCCCCCCCccceeeec-cCHHHHHHHHHhhhH--H-HHHHHhCCccc
Q 024647          156 TV---DSDPFWEPQRKLVDNKYMTIDFPFEPVDGADSTGPFDRFVIEKT-MDLEGYFSYIRSWSA--Y-QTAKDKGVELL  228 (265)
Q Consensus       156 ~~---~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~s~--~-~~~~~~~~~~l  228 (265)
                      ..   ...+++.  ...+.+.+...||  + +...       ....... -+.+.+..++++.+.  + ..+.+...+.+
T Consensus       158 ~~~~~~~~~~~~--~~~~~~~l~~aGf--~-v~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  225 (259)
T 2p35_A          158 SGGGLRRKPLPP--PSDYFNALSPKSS--R-VDVW-------HTVYNHPMKDADSIVEWVKGTGLRPYLAAAGEENREAF  225 (259)
T ss_dssp             -------CCCCC--HHHHHHHHGGGEE--E-EEEE-------EEEEEEEESCHHHHHHHHTTTTTTHHHHTTCGGGHHHH
T ss_pred             ccccccccCCCC--HHHHHHHHHhcCC--c-eEEE-------EEEeeeccCCchHHhhhhhcCcchHHHHhCCHHHHHHH
Confidence            10   0111111  1122333333332  1 1100       1111122 267888888887652  1 11222233444


Q ss_pred             hHHHHHHHHHHhccCCCccEEEEEeeEEEEeecC
Q 024647          229 TENVIENFRRAWNEDGQSRKVVRFPIYLRIGKVG  262 (265)
Q Consensus       229 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ark~  262 (265)
                      .+++.+.+.+.+....++.+.++|.+++++||||
T Consensus       226 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~Kp  259 (259)
T 2p35_A          226 LADYTRRIAAAYPPMADGRLLLRFPRLFVVAVKK  259 (259)
T ss_dssp             HHHHHHHHHHHSCCCTTSCEEEEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHhCCCCCCCeEEEEeeeEEEEEecC
Confidence            4445566666655322225899999999999996

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.88  E-value=7.5e-23  Score=171.29  Aligned_cols=228  Identities=15%  Similarity=0.169  Sum_probs=134.2

Q ss_pred             HHhhhCCCCcHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC------CCceEEec
Q 024647           11 QYAETRPNYPEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL------PNIRYELT   82 (265)
Q Consensus        11 ~Y~~~rp~y~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~   82 (265)
                      .|...-...+.+-++.+....  .++.+|||+|||+|.++..+++.+++|+|+|+|+.|++.+++.      +++.+.. 
T Consensus        13 ~~~~s~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~-   91 (260)
T 1vl5_A           13 MYVTSQIHAKGSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQ-   91 (260)
T ss_dssp             ----------CCCHHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEE-
T ss_pred             eeecCccccCHHHHHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEE-
Confidence            344433333333333443332  4678999999999999999999999999999999999988752      5677877 


Q ss_pred             CCccchhhhhhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHhhc---ccccCC
Q 024647           83 SPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQ---PFYTVD  158 (265)
Q Consensus        83 ~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~~---~~~~~~  158 (265)
                            +|++.+++++++||+|+++.++||+ |+..+++++.++|| |||.|++..+..+.. ..+...+.   ......
T Consensus        92 ------~d~~~l~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lk-pgG~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~  163 (260)
T 1vl5_A           92 ------GDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLK-KGGQLLLVDNSAPEN-DAFDVFYNYVEKERDYS  163 (260)
T ss_dssp             ------CCC-CCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEEEBCSS-HHHHHHHHHHHHHHCTT
T ss_pred             ------ecHHhCCCCCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcC-CCCEEEEEEcCCCCC-HHHHHHHHHHHHhcCcc
Confidence                  6677788888999999999999998 89999999999999 999999865543321 22222221   111111


Q ss_pred             CCCCcchhhhhhhhccCCCCCCCCCCCCCCCCCCCccceeeeccCHHHHHHHHHhhhHHHHHHHhCCccchHHHHHHHHH
Q 024647          159 SDPFWEPQRKLVDNKYMTIDFPFEPVDGADSTGPFDRFVIEKTMDLEGYFSYIRSWSAYQTAKDKGVELLTENVIENFRR  238 (265)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~l~~~~~~~l~~  238 (265)
                      ...++.+.  .+.+.+...|  |+.+.         .......++..++...+................    ..+.+.+
T Consensus       164 ~~~~~~~~--~~~~~l~~aG--f~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  226 (260)
T 1vl5_A          164 HHRAWKKS--DWLKMLEEAG--FELEE---------LHCFHKTFIFEDWCDRMNVTTEKKQELSDFIKS----KPTEYYQ  226 (260)
T ss_dssp             CCCCCBHH--HHHHHHHHHT--CEEEE---------EEEEEEEEEHHHHHHHTTCCHHHHHHHHHHHHT----SCHHHHH
T ss_pred             ccCCCCHH--HHHHHHHHCC--CeEEE---------EEEeeccCCHHHHHHhcCCCHHHHHHHHHHHHh----CcHHHHH
Confidence            12222221  1223333333  32222         122233455666666555433221111111111    1233444


Q ss_pred             Hhcc--CCCccEEEEEeeEEEEeecCCC
Q 024647          239 AWNE--DGQSRKVVRFPIYLRIGKVGNN  264 (265)
Q Consensus       239 ~~~~--~~~~~~~~~~~~~~~~ark~~~  264 (265)
                      .+..  ..+..+.+++...+++||||..
T Consensus       227 ~~~~~~~~g~~~~~~~~~~~~~a~k~~~  254 (260)
T 1vl5_A          227 KFKIVVEDGRVYSFRGESILMKARKPTV  254 (260)
T ss_dssp             HTTCEEETTEEEEEEEEEEEEEEECCC-
T ss_pred             HcceeccCCCcceEEeeEEEEEEEccch
Confidence            4443  1211378999999999999853

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.87  E-value=1.2e-21  Score=162.04  Aligned_cols=210  Identities=16%  Similarity=0.184  Sum_probs=135.6

Q ss_pred             CCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC------CCceEEecCCccchhhhhhccCCCCceeEE
Q 024647           31 TTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAELEQNVAAQSTVDLV  104 (265)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv  104 (265)
                      ..++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.+++.      +++.+..       +|++.+++++++||+|
T Consensus        19 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~-------~d~~~~~~~~~~fD~v   91 (239)
T 1xxl_A           19 CRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQ-------GTAESLPFPDDSFDII   91 (239)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEE-------CBTTBCCSCTTCEEEE
T ss_pred             cCCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEe-------cccccCCCCCCcEEEE
Confidence            35678999999999999999999999999999999999988752      5677777       6677788888899999


Q ss_pred             EeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHhhcccc---cCCCCCCcchhhhhhhhccCCCCCC
Q 024647          105 TIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQPFY---TVDSDPFWEPQRKLVDNKYMTIDFP  180 (265)
Q Consensus       105 ~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  180 (265)
                      ++..++|++ ++..+++++.++|+ |||.+++.....+.. ..+...++...   ......++.+  ..+.+.+...|  
T Consensus        92 ~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ll~~aG--  165 (239)
T 1xxl_A           92 TCRYAAHHFSDVRKAVREVARVLK-QDGRFLLVDHYAPED-PVLDEFVNHLNRLRDPSHVRESSL--SEWQAMFSANQ--  165 (239)
T ss_dssp             EEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEECBCSS-HHHHHHHHHHHHHHCTTCCCCCBH--HHHHHHHHHTT--
T ss_pred             EECCchhhccCHHHHHHHHHHHcC-CCcEEEEEEcCCCCC-hhHHHHHHHHHHhccccccCCCCH--HHHHHHHHHCC--
Confidence            999999888 89999999999999 999999876653332 33333222111   1011112211  11223333333  


Q ss_pred             CCCCCCCCCCCCCccceeeeccCHHHHHHHHHhhhHHHHHHHhCCccchHHHHHHHHHHhccCCCccEEEEEeeEEEEee
Q 024647          181 FEPVDGADSTGPFDRFVIEKTMDLEGYFSYIRSWSAYQTAKDKGVELLTENVIENFRRAWNEDGQSRKVVRFPIYLRIGK  260 (265)
Q Consensus       181 f~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ar  260 (265)
                      |+.+.         ...+...++..++.+.+++.+............+.++.++.+...++.+| ..+.+++...++.|.
T Consensus       166 f~~~~---------~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~~~~t~~~~~~~~~  235 (239)
T 1xxl_A          166 LAYQD---------IQKWNLPIQYDSWIKRGGTPADREKQIITHLNHASDEARDTFCITLNQNG-QPISFCLKAILIQGI  235 (239)
T ss_dssp             EEEEE---------EEEEEEEEEHHHHHHHHTCCHHHHHHHHHHHHTCCHHHHHHTTCEECTTS-CEEEEEEEEEEEEEE
T ss_pred             CcEEE---------EEeecCccCHHHHHHHcCCCHHHHHHHHHHHHhCCHHHHHHhCeeecCCC-CceeEEeeeeehehh
Confidence            33222         23344566778888877765543333222222222323333332211222 235899999999998


Q ss_pred             cCC
Q 024647          261 VGN  263 (265)
Q Consensus       261 k~~  263 (265)
                      |.+
T Consensus       236 k~~  238 (239)
T 1xxl_A          236 KRE  238 (239)
T ss_dssp             ECB
T ss_pred             ccC
Confidence            864

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.82  E-value=2.8e-20  Score=155.91  Aligned_cols=126  Identities=21%  Similarity=0.280  Sum_probs=102.0

Q ss_pred             HHHHHHHHHhhhCCCCcHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEe
Q 024647            4 LFIKQAKQYAETRPNYPEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYEL   81 (265)
Q Consensus         4 ~f~~~a~~Y~~~rp~y~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~   81 (265)
                      .|+..+..|++.++.++ .+.+.+....  .++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.++...++.+..
T Consensus         4 ~y~~~a~~y~~~~~~~~-~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~   82 (261)
T 3ege_A            4 IYNSIGKQYSQTRVPDI-RIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHPQVEWFT   82 (261)
T ss_dssp             ---------CCSBCCCH-HHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCCTTEEEEC
T ss_pred             HHHHHHHHHhhcccccH-HHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhccCCEEEE
Confidence            68999999999999864 5777776665  56789999999999999999998889999999999999998777888887


Q ss_pred             cCCccchhhhhhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           82 TSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        82 ~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                             +|++++++++++||+|++..++|++ ++..+++++.++||  ||.+++..+.
T Consensus        83 -------~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk--gG~~~~~~~~  132 (261)
T 3ege_A           83 -------GYAENLALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR--DGTIVLLTFD  132 (261)
T ss_dssp             -------CCTTSCCSCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC--SSCEEEEEEC
T ss_pred             -------CchhhCCCCCCCEeEEEEcchHhhccCHHHHHHHHHHHhC--CcEEEEEEcC
Confidence                   6677788888999999999999988 89999999999998  8877776654

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.81  E-value=1.4e-19  Score=149.48  Aligned_cols=130  Identities=16%  Similarity=0.253  Sum_probs=101.2

Q ss_pred             hHHHHHHHHHhhh-----CCCCcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC---
Q 024647            3 ELFIKQAKQYAET-----RPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL---   74 (265)
Q Consensus         3 ~~f~~~a~~Y~~~-----rp~y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---   74 (265)
                      +.|+..+..|+..     .......+++++....+++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.+++.   
T Consensus        18 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~   97 (242)
T 3l8d_A           18 KKWDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERGEG   97 (242)
T ss_dssp             --------------CHHHHTSTTTTHHHHHHHHSCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTTCB
T ss_pred             HHHHhHHHHhhhhhhhccCcccHHHHHHHHHHHcCCCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhccc
Confidence            4566666666652     12334567888888888889999999999999999999989999999999999999864   


Q ss_pred             CCceEEecCCccchhhhhhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecCC
Q 024647           75 PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTV  140 (265)
Q Consensus        75 ~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~  140 (265)
                      .++.+..       +|+.++++++++||+|++..++|++ ++..+++++.++|+ |||.+++..+..
T Consensus        98 ~~~~~~~-------~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~i~~~~~  156 (242)
T 3l8d_A           98 PDLSFIK-------GDLSSLPFENEQFEAIMAINSLEWTEEPLRALNEIKRVLK-SDGYACIAILGP  156 (242)
T ss_dssp             TTEEEEE-------CBTTBCSSCTTCEEEEEEESCTTSSSCHHHHHHHHHHHEE-EEEEEEEEEECT
T ss_pred             CCceEEE-------cchhcCCCCCCCccEEEEcChHhhccCHHHHHHHHHHHhC-CCeEEEEEEcCC
Confidence            5677777       6777777788999999999999998 88899999999999 999999877653

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.80  E-value=5.3e-19  Score=148.15  Aligned_cols=123  Identities=15%  Similarity=0.281  Sum_probs=96.0

Q ss_pred             HHHHHHhh----hCCCCcHHHHHHH----HhhCCCCCeEEEEcCCcchhHHHHHhcC----CcEEEEcCCHHHHHHHHcC
Q 024647            7 KQAKQYAE----TRPNYPEELFKFI----TSKTTNHELAWDVGTGSGQAAASLSGIF----ENVIGTETSPKQIEFATKL   74 (265)
Q Consensus         7 ~~a~~Y~~----~rp~y~~~l~~~l----~~~~~~~~~vlDvGcG~G~~~~~l~~~~----~~v~~vD~s~~~~~~a~~~   74 (265)
                      +.|+.|+.    .-|.|. ++.+.+    ..+.+++.+|||||||+|..+..+++++    .+|+|||+|+.|++.|++.
T Consensus        37 ~va~~fdd~i~rsvP~Y~-~~~~~i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~  115 (261)
T 4gek_A           37 RVAEVFPDMIQRSVPGYS-NIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRH  115 (261)
T ss_dssp             HHHHHHHHHHHHHSTTHH-HHHHHHHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHH
T ss_pred             chhhhhhhhHhhcCCCHH-HHHHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHH
Confidence            45777764    568884 333332    2345788999999999999999999864    3799999999999998752


Q ss_pred             -------CCceEEecCCccchhhhhhccCCCCceeEEEeccccccCCh---hHHHHHHHHHhcCCCcEEEEEecCC
Q 024647           75 -------PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDL---PQFYNQVKWVLKKPNGVIATWCYTV  140 (265)
Q Consensus        75 -------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~---~~~l~~~~~~Lk~pgG~l~~~~~~~  140 (265)
                             .++++.+       +|+.++++  +++|+|++++++|++++   ..++++++++|| |||.|++.....
T Consensus       116 ~~~~~~~~~v~~~~-------~D~~~~~~--~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~Lk-pGG~lii~e~~~  181 (261)
T 4gek_A          116 IDAYKAPTPVDVIE-------GDIRDIAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLN-PGGALVLSEKFS  181 (261)
T ss_dssp             HHTSCCSSCEEEEE-------SCTTTCCC--CSEEEEEEESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEEBC
T ss_pred             HHhhccCceEEEee-------cccccccc--cccccceeeeeeeecCchhHhHHHHHHHHHcC-CCcEEEEEeccC
Confidence                   3577777       66777654  56999999999999843   368999999999 999999876543

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.79  E-value=3.5e-19  Score=144.24  Aligned_cols=126  Identities=18%  Similarity=0.190  Sum_probs=105.6

Q ss_pred             hHHHHHHHHHhhhCCCCcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEec
Q 024647            3 ELFIKQAKQYAETRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELT   82 (265)
Q Consensus         3 ~~f~~~a~~Y~~~rp~y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~   82 (265)
                      +.|+..+..|+.....  ...+..+....+++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.+++..++.+.. 
T Consensus        15 ~~~~~~~~~y~~~~~~--~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-   91 (211)
T 3e23_A           15 RFYRGNATAYAERQPR--SATLTKFLGELPAGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRLGRPVRT-   91 (211)
T ss_dssp             HHHHHSHHHHTTCCCC--CHHHHHHHTTSCTTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTSCCEE-
T ss_pred             HHHHHHHHHHhhccch--hHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhcCCceEE-
Confidence            5788888999886665  4555566666677889999999999999999999889999999999999998754666666 


Q ss_pred             CCccchhhhhhccCCCCceeEEEeccccccC---ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           83 SPAMSIAELEQNVAAQSTVDLVTIAQAMHWF---DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        83 ~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~---~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                            +|+..++ ++++||+|++..++|++   +...+++++.++|+ |||.+++....
T Consensus        92 ------~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~  143 (211)
T 3e23_A           92 ------MLFHQLD-AIDAYDAVWAHACLLHVPRDELADVLKLIWRALK-PGGLFYASYKS  143 (211)
T ss_dssp             ------CCGGGCC-CCSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEEC
T ss_pred             ------eeeccCC-CCCcEEEEEecCchhhcCHHHHHHHHHHHHHhcC-CCcEEEEEEcC
Confidence                  6667776 77899999999999998   45689999999999 99999986543

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.79  E-value=4.3e-19  Score=142.83  Aligned_cols=130  Identities=12%  Similarity=0.209  Sum_probs=103.4

Q ss_pred             hhHHHHHHHHHhhhCCCC------cHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc-C
Q 024647            2 AELFIKQAKQYAETRPNY------PEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK-L   74 (265)
Q Consensus         2 ~~~f~~~a~~Y~~~rp~y------~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-~   74 (265)
                      .+.|+..+..|+...+..      ...++..+...  .+.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.+++ .
T Consensus         6 ~~~y~~~a~~y~~~~~~~~~~~~~~~~~l~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~   83 (203)
T 3h2b_A            6 SKAYSSPTFDAEALLGTVISAEDPDRVLIEPWATG--VDGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTH   83 (203)
T ss_dssp             HHHHHCTTTCHHHHTCSSCCTTCTTHHHHHHHHHH--CCSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHHC
T ss_pred             HHHHhhHHHHHHHHhhhhccccHHHHHHHHHHhcc--CCCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC
Confidence            356777888886643321      12333333332  26789999999999999999998899999999999999986 4


Q ss_pred             CCceEEecCCccchhhhhhccCCCCceeEEEeccccccC---ChhHHHHHHHHHhcCCCcEEEEEecCCC
Q 024647           75 PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF---DLPQFYNQVKWVLKKPNGVIATWCYTVP  141 (265)
Q Consensus        75 ~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~---~~~~~l~~~~~~Lk~pgG~l~~~~~~~~  141 (265)
                      +++.+..       +|+.++++++++||+|++..++|++   ++..+++++.++|+ |||.+++..+...
T Consensus        84 ~~~~~~~-------~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~-pgG~l~i~~~~~~  145 (203)
T 3h2b_A           84 PSVTFHH-------GTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVE-DGGGLLMSFFSGP  145 (203)
T ss_dssp             TTSEEEC-------CCGGGGGGSCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEE-EEEEEEEEEECCS
T ss_pred             CCCeEEe-------CcccccccCCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcC-CCcEEEEEEccCC
Confidence            6788887       6667777788999999999999988   67789999999999 9999998776543

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.79  E-value=4.7e-18  Score=144.77  Aligned_cols=100  Identities=21%  Similarity=0.204  Sum_probs=87.9

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhc-CCcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCCCCceeE
Q 024647           32 TNHELAWDVGTGSGQAAASLSGI-FENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAAQSTVDL  103 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dl  103 (265)
                      .++.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.+++.       .++.+..       +|+.++++++++||+
T Consensus        81 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~-------~d~~~~~~~~~~fD~  153 (297)
T 2o57_A           81 QRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKY-------GSFLEIPCEDNSYDF  153 (297)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEE-------CCTTSCSSCTTCEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEE-------cCcccCCCCCCCEeE
Confidence            56789999999999999999987 66999999999999988752       4678877       666778888899999


Q ss_pred             EEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          104 VTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       104 v~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      |++..++|++ ++..+++++.++|| |||.+++..+.
T Consensus       154 v~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~  189 (297)
T 2o57_A          154 IWSQDAFLHSPDKLKVFQECARVLK-PRGVMAITDPM  189 (297)
T ss_dssp             EEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEEE
T ss_pred             EEecchhhhcCCHHHHHHHHHHHcC-CCeEEEEEEec
Confidence            9999999988 88999999999999 99999987654

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.79  E-value=1.4e-18  Score=146.12  Aligned_cols=110  Identities=21%  Similarity=0.269  Sum_probs=91.7

Q ss_pred             HHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhc-CCcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhh
Q 024647           22 ELFKFITSKT--TNHELAWDVGTGSGQAAASLSGI-FENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAEL   91 (265)
Q Consensus        22 ~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~   91 (265)
                      .+.+.+....  .++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++.       .++.+..       +|+
T Consensus        48 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~-------~d~  120 (273)
T 3bus_A           48 RLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSY-------ADA  120 (273)
T ss_dssp             HHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE-------CCT
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEE-------Ccc
Confidence            3444555544  46789999999999999999985 56899999999999988752       3577777       666


Q ss_pred             hhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           92 EQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        92 ~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      .++++++++||+|++..++|++ ++..+++++.++|+ |||.+++..+.
T Consensus       121 ~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~i~~~~  168 (273)
T 3bus_A          121 MDLPFEDASFDAVWALESLHHMPDRGRALREMARVLR-PGGTVAIADFV  168 (273)
T ss_dssp             TSCCSCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEE-EEEEEEEEEEE
T ss_pred             ccCCCCCCCccEEEEechhhhCCCHHHHHHHHHHHcC-CCeEEEEEEee
Confidence            7777788899999999999999 89999999999999 99999986654

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.78  E-value=6.5e-19  Score=149.30  Aligned_cols=129  Identities=19%  Similarity=0.307  Sum_probs=101.2

Q ss_pred             hHHHHHHHHHhhhCCCCcHHHH----------HHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHH
Q 024647            3 ELFIKQAKQYAETRPNYPEELF----------KFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFAT   72 (265)
Q Consensus         3 ~~f~~~a~~Y~~~rp~y~~~l~----------~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~   72 (265)
                      ..|+..+..|+......+....          ..+....+++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.++
T Consensus        28 ~~fd~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~  107 (285)
T 4htf_A           28 RNFDDIAEKFSRNIYGTTKGQLRQAILWQDLDRVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAK  107 (285)
T ss_dssp             ----CHHHHHHSCTTSCHHHHHHHHHHHHHHHHHHHHTCSSCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             cchhhHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            5688899999986655443322          222223345679999999999999999999889999999999999987


Q ss_pred             cC-------CCceEEecCCccchhhhhhcc-CCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           73 KL-------PNIRYELTSPAMSIAELEQNV-AAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        73 ~~-------~~~~~~~~~~~~~~~d~~~~~-~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +.       +++.+..       +|+.+++ +++++||+|++..++|++ ++..+++++.++|+ |||.+++..+.
T Consensus       108 ~~~~~~~~~~~v~~~~-------~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~  175 (285)
T 4htf_A          108 QAAEAKGVSDNMQFIH-------CAAQDVASHLETPVDLILFHAVLEWVADPRSVLQTLWSVLR-PGGVLSLMFYN  175 (285)
T ss_dssp             HHHHC-CCGGGEEEEE-------SCGGGTGGGCSSCEEEEEEESCGGGCSCHHHHHHHHHHTEE-EEEEEEEEEEB
T ss_pred             HHHHhcCCCcceEEEE-------cCHHHhhhhcCCCceEEEECchhhcccCHHHHHHHHHHHcC-CCeEEEEEEeC
Confidence            52       4677777       5566665 567899999999999999 89999999999999 99999987664

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.77  E-value=1.9e-18  Score=140.65  Aligned_cols=126  Identities=18%  Similarity=0.209  Sum_probs=90.2

Q ss_pred             hHHHHHHHHHhhhC----CCCc------HHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHH
Q 024647            3 ELFIKQAKQYAETR----PNYP------EELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFAT   72 (265)
Q Consensus         3 ~~f~~~a~~Y~~~r----p~y~------~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~   72 (265)
                      +.|+..++.|+...    +.|.      ..+++.+..  .++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.++
T Consensus         7 ~~f~~~a~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~   84 (220)
T 3hnr_A            7 GLFDEWAHTYDSFVQGEDIQYKEVFAHYEDILEDVVN--KSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAK   84 (220)
T ss_dssp             -----------------CCTTTTTTTTHHHHHHHHHH--TCCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHHhhc--cCCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHH
Confidence            56888888898743    2222      244444432  36679999999999999999999889999999999999998


Q ss_pred             cC-C-CceEEecCCccchhhhhhccCCCCceeEEEeccccccC-ChhH--HHHHHHHHhcCCCcEEEEEecC
Q 024647           73 KL-P-NIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQ--FYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        73 ~~-~-~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~~--~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +. . ++.+..       +|+.+++.+ ++||+|++..++|++ ++..  +++++.++|| |||.+++..+.
T Consensus        85 ~~~~~~~~~~~-------~d~~~~~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~  147 (220)
T 3hnr_A           85 EKLPKEFSITE-------GDFLSFEVP-TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLN-KGGKIVFADTI  147 (220)
T ss_dssp             HHSCTTCCEES-------CCSSSCCCC-SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSC-TTCEEEEEEEC
T ss_pred             HhCCCceEEEe-------CChhhcCCC-CCeEEEEECcchhcCChHHHHHHHHHHHHhcC-CCCEEEEEecc
Confidence            63 3 677776       666777766 899999999999999 5555  9999999999 99999987654

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.77  E-value=2.1e-18  Score=144.84  Aligned_cols=124  Identities=19%  Similarity=0.188  Sum_probs=99.5

Q ss_pred             HHHHHHHhh---hCCCCcHHHHHHHHhhC---CCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC----
Q 024647            6 IKQAKQYAE---TRPNYPEELFKFITSKT---TNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL----   74 (265)
Q Consensus         6 ~~~a~~Y~~---~rp~y~~~l~~~l~~~~---~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~----   74 (265)
                      +..++.|+.   ..|.++ .....+....   +++.+|||||||+|.++..+++... +|+|+|+|+.|++.+++.    
T Consensus        14 ~~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~   92 (267)
T 3kkz_A           14 NLICDFFSNMERQGPGSP-EVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQS   92 (267)
T ss_dssp             HHHHHHHHTSSCSSSCCH-HHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhccccCCCCH-HHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHc
Confidence            345555554   556554 4444444443   4678999999999999999998855 899999999999988752    


Q ss_pred             ---CCceEEecCCccchhhhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647           75 ---PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        75 ---~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                         +++.+..       +|+.++++++++||+|++..++|++++..+++++.++|+ |||.+++.++
T Consensus        93 ~~~~~v~~~~-------~d~~~~~~~~~~fD~i~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~  151 (267)
T 3kkz_A           93 GLQNRVTGIV-------GSMDDLPFRNEELDLIWSEGAIYNIGFERGLNEWRKYLK-KGGYLAVSEC  151 (267)
T ss_dssp             TCTTTEEEEE-------CCTTSCCCCTTCEEEEEESSCGGGTCHHHHHHHHGGGEE-EEEEEEEEEE
T ss_pred             CCCcCcEEEE-------cChhhCCCCCCCEEEEEEcCCceecCHHHHHHHHHHHcC-CCCEEEEEEe
Confidence               4578887       666777777889999999999999999999999999999 9999998654

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.77  E-value=1e-18  Score=141.49  Aligned_cols=127  Identities=17%  Similarity=0.187  Sum_probs=101.2

Q ss_pred             HHHHHHHHHhhhCCCCcHH-----HHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC-CC
Q 024647            4 LFIKQAKQYAETRPNYPEE-----LFKFITSKTTNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL-PN   76 (265)
Q Consensus         4 ~f~~~a~~Y~~~rp~y~~~-----l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-~~   76 (265)
                      .|+..|..|+.........     ..+.+....+++.+|||+|||+|..+..+   .. +++|+|+|+.|++.+++. ++
T Consensus         2 ~fd~~a~~y~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~~~   78 (211)
T 2gs9_A            2 PFASLAEAYEAWYGTPLGAYVIAEEERALKGLLPPGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRAPE   78 (211)
T ss_dssp             TTTTTTTTTTGGGGSHHHHHHHHHHHHHHHTTCCCCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHCTT
T ss_pred             chhhHHHHHHHHhcccchhhhHHHHHHHHHHhcCCCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhCCC
Confidence            4677788888754432211     22344444567789999999999999988   45 899999999999998863 57


Q ss_pred             ceEEecCCccchhhhhhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecCCC
Q 024647           77 IRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTVP  141 (265)
Q Consensus        77 ~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~~  141 (265)
                      +.+..       +|+.++++++++||+|++..++|++ ++..+++++.++|+ |||.+++..+...
T Consensus        79 ~~~~~-------~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~i~~~~~~  136 (211)
T 2gs9_A           79 ATWVR-------AWGEALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLR-PGGALVVGVLEAL  136 (211)
T ss_dssp             SEEEC-------CCTTSCCSCSSCEEEEEEESCTTTCSCHHHHHHHHHHHEE-EEEEEEEEEECTT
T ss_pred             cEEEE-------cccccCCCCCCcEEEEEEcChhhhcCCHHHHHHHHHHHcC-CCCEEEEEecCCc
Confidence            77777       6667777788899999999999999 89999999999999 9999999777543

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.76  E-value=6.9e-19  Score=142.09  Aligned_cols=108  Identities=16%  Similarity=0.066  Sum_probs=86.3

Q ss_pred             cHHHHHHHHhhC-CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC------------------CCceEE
Q 024647           20 PEELFKFITSKT-TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL------------------PNIRYE   80 (265)
Q Consensus        20 ~~~l~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------------------~~~~~~   80 (265)
                      .+.+.+++.... +++.+|||+|||+|..+..|++++.+|+|+|+|+.|++.|++.                  .++++.
T Consensus         8 ~~~l~~~~~~l~~~~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~   87 (203)
T 1pjz_A            8 NKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIW   87 (203)
T ss_dssp             THHHHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEE
T ss_pred             CHHHHHHHHhcccCCCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEE
Confidence            345566655442 4678999999999999999999999999999999999998752                  245555


Q ss_pred             ecCCccchhhhhhccCCC-CceeEEEeccccccCCh---hHHHHHHHHHhcCCCcEEEE
Q 024647           81 LTSPAMSIAELEQNVAAQ-STVDLVTIAQAMHWFDL---PQFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus        81 ~~~~~~~~~d~~~~~~~~-~~~Dlv~~~~~~~~~~~---~~~l~~~~~~Lk~pgG~l~~  135 (265)
                      +       +|+.+++.++ ++||+|++..++|+++.   ..+++++.++|| |||.+++
T Consensus        88 ~-------~d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lk-pgG~~~l  138 (203)
T 1pjz_A           88 C-------GDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMP-QACSGLL  138 (203)
T ss_dssp             E-------ECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSC-SEEEEEE
T ss_pred             E-------CccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcC-CCcEEEE
Confidence            5       7777776554 78999999999998843   468999999999 9998444

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.76  E-value=1.4e-18  Score=143.70  Aligned_cols=129  Identities=16%  Similarity=0.187  Sum_probs=92.8

Q ss_pred             hHHHHHHHHHhhhCCC---CcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC-C-Cc
Q 024647            3 ELFIKQAKQYAETRPN---YPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL-P-NI   77 (265)
Q Consensus         3 ~~f~~~a~~Y~~~rp~---y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-~-~~   77 (265)
                      +.|+..+..|+. .+.   .-..+.+.+... .++.+|||||||+|.++..+++.+++|+|+|+|+.|++.|++. . ++
T Consensus        11 ~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~v   88 (250)
T 2p7i_A           11 EIKDTAGHKYAY-NFDFDVMHPFMVRAFTPF-FRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKDGI   88 (250)
T ss_dssp             -------------CHHHHTHHHHHHHHHGGG-CCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCSCE
T ss_pred             HHHhhHHHHhcC-ccchhhHHHHHHHHHHhh-cCCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhCCe
Confidence            345555666643 110   012233333332 4567899999999999999999999999999999999999863 2 67


Q ss_pred             eEEecCCccchhhhhhccCCCCceeEEEeccccccC-ChhHHHHHHH-HHhcCCCcEEEEEecCCCC
Q 024647           78 RYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVK-WVLKKPNGVIATWCYTVPE  142 (265)
Q Consensus        78 ~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~-~~Lk~pgG~l~~~~~~~~~  142 (265)
                      .+..       +|++++ .++++||+|++..++|++ |+..+++++. ++|| |||.+++..+....
T Consensus        89 ~~~~-------~d~~~~-~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~Lk-pgG~l~i~~~~~~~  146 (250)
T 2p7i_A           89 TYIH-------SRFEDA-QLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLA-EGGRLFLVCPNANA  146 (250)
T ss_dssp             EEEE-------SCGGGC-CCSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEE-EEEEEEEEEECTTC
T ss_pred             EEEE-------ccHHHc-CcCCcccEEEEhhHHHhhcCHHHHHHHHHHHhcC-CCCEEEEEcCChHH
Confidence            7777       566666 467899999999999999 8999999999 9999 99999998776443

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.76  E-value=1.1e-18  Score=146.09  Aligned_cols=127  Identities=17%  Similarity=0.248  Sum_probs=101.1

Q ss_pred             HHH-HHHHHHhhhC----CCC---cHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc-C
Q 024647            4 LFI-KQAKQYAETR----PNY---PEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK-L   74 (265)
Q Consensus         4 ~f~-~~a~~Y~~~r----p~y---~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-~   74 (265)
                      .|+ ..+..|+...    +.|   ...+.+.+....+++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.|++ .
T Consensus        13 ~y~~~~a~~yd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~   92 (263)
T 3pfg_A           13 DYSGEIAELYDLVHQGKGKDYHREAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRN   92 (263)
T ss_dssp             SCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHC
T ss_pred             ccchhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhC
Confidence            355 6677777733    333   234455555566777899999999999999999999999999999999999986 4


Q ss_pred             CCceEEecCCccchhhhhhccCCCCceeEEEecc-ccccC----ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           75 PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ-AMHWF----DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        75 ~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~-~~~~~----~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +++.+..       +|+..++. +++||+|++.. ++|++    +...+++++.++|+ |||.+++..+.
T Consensus        93 ~~~~~~~-------~d~~~~~~-~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~-pgG~l~i~~~~  153 (263)
T 3pfg_A           93 PDAVLHH-------GDMRDFSL-GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVL-PDGVVVVEPWW  153 (263)
T ss_dssp             TTSEEEE-------CCTTTCCC-SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEE-EEEEEEECCCC
T ss_pred             CCCEEEE-------CChHHCCc-cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcC-CCcEEEEEecc
Confidence            6788887       66677765 68999999998 99998    34478999999999 99999986443

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.76  E-value=7e-18  Score=136.84  Aligned_cols=128  Identities=18%  Similarity=0.225  Sum_probs=100.2

Q ss_pred             hHHHHHHHHHhhhCC----CCcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC--CC
Q 024647            3 ELFIKQAKQYAETRP----NYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL--PN   76 (265)
Q Consensus         3 ~~f~~~a~~Y~~~rp----~y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~--~~   76 (265)
                      ..|+..+..|+....    ..-..+.+.+.. .+++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.+++.  .+
T Consensus        13 ~~~~~~a~~y~~~~~~~~~~~~~~~~~~l~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~   91 (218)
T 3ou2_A           13 SYYRARASEYDATFVPYMDSAAPAALERLRA-GNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGRHGLDN   91 (218)
T ss_dssp             HHHHHHGGGHHHHHHHHHTTTHHHHHHHHTT-TTSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGGGCCTT
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc-CCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHhcCCCC
Confidence            456777777766221    122233433332 35667999999999999999999988999999999999999862  56


Q ss_pred             ceEEecCCccchhhhhhccCCCCceeEEEeccccccCCh---hHHHHHHHHHhcCCCcEEEEEecCC
Q 024647           77 IRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDL---PQFYNQVKWVLKKPNGVIATWCYTV  140 (265)
Q Consensus        77 ~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~---~~~l~~~~~~Lk~pgG~l~~~~~~~  140 (265)
                      +.+..       +|+.++ .++++||+|+++.++|+++.   ..+++++.++|+ |||.+++..+..
T Consensus        92 ~~~~~-------~d~~~~-~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~  149 (218)
T 3ou2_A           92 VEFRQ-------QDLFDW-TPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVA-PGGVVEFVDVTD  149 (218)
T ss_dssp             EEEEE-------CCTTSC-CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEECC
T ss_pred             eEEEe-------cccccC-CCCCceeEEEEechhhcCCHHHHHHHHHHHHHHcC-CCeEEEEEeCCC
Confidence            77777       566666 57889999999999999944   789999999999 999999877764

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.76  E-value=4.4e-18  Score=139.89  Aligned_cols=131  Identities=21%  Similarity=0.299  Sum_probs=103.5

Q ss_pred             hhHHHHHHHHHhhh----CCCCcHHHHHHHHhhC---CCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHH
Q 024647            2 AELFIKQAKQYAET----RPNYPEELFKFITSKT---TNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFAT   72 (265)
Q Consensus         2 ~~~f~~~a~~Y~~~----rp~y~~~l~~~l~~~~---~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~   72 (265)
                      .+.|+..+..|+..    .|.| ....+.+....   .++.+|||+|||+|.++..+++.+  .+|+|+|+|+.|++.++
T Consensus         7 ~~~f~~~a~~y~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~   85 (234)
T 3dtn_A            7 KRKFDAVSGKYDEQRRKFIPCF-DDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAK   85 (234)
T ss_dssp             CCCCCHHHHHHHHHHHHHCTTH-HHHHHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHhCcCH-HHHHHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHH
Confidence            35788889999873    3443 44445555443   466899999999999999999984  58999999999999987


Q ss_pred             cC----CCceEEecCCccchhhhhhccCCCCceeEEEeccccccCChh---HHHHHHHHHhcCCCcEEEEEecCCCC
Q 024647           73 KL----PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLP---QFYNQVKWVLKKPNGVIATWCYTVPE  142 (265)
Q Consensus        73 ~~----~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~---~~l~~~~~~Lk~pgG~l~~~~~~~~~  142 (265)
                      +.    .++.+..       +|+.+++.+ ++||+|++..++|+++..   .+++++.++|+ |||.+++.++..+.
T Consensus        86 ~~~~~~~~~~~~~-------~d~~~~~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~  153 (234)
T 3dtn_A           86 NRFRGNLKVKYIE-------ADYSKYDFE-EKYDMVVSALSIHHLEDEDKKELYKRSYSILK-ESGIFINADLVHGE  153 (234)
T ss_dssp             HHTCSCTTEEEEE-------SCTTTCCCC-SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEECBCS
T ss_pred             HhhccCCCEEEEe-------CchhccCCC-CCceEEEEeCccccCCHHHHHHHHHHHHHhcC-CCcEEEEEEecCCC
Confidence            62    3677777       666777655 899999999999999443   49999999999 99999987765443

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.76  E-value=2.7e-18  Score=139.25  Aligned_cols=116  Identities=16%  Similarity=0.191  Sum_probs=94.2

Q ss_pred             hCCCCcHHHHHHHHhhC-CCCCeEEEEcCCcchhHHHHHhc-CCcEEEEcCCHHHHHHHHcC-------CCceEEecCCc
Q 024647           15 TRPNYPEELFKFITSKT-TNHELAWDVGTGSGQAAASLSGI-FENVIGTETSPKQIEFATKL-------PNIRYELTSPA   85 (265)
Q Consensus        15 ~rp~y~~~l~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~   85 (265)
                      .+|.| +.+.+.+.... .++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.+++.       .++.+..    
T Consensus        25 ~~~~~-~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~----   99 (219)
T 3dlc_A           25 FAPIY-PIIAENIINRFGITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQ----   99 (219)
T ss_dssp             TTTHH-HHHHHHHHHHHCCCEEEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE----
T ss_pred             hcccc-HHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEE----
Confidence            44544 34555555443 33449999999999999999987 45899999999999988753       3677777    


Q ss_pred             cchhhhhhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           86 MSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        86 ~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                         +|+.++++++++||+|++..++|++ ++..+++++.++|+ |||.+++....
T Consensus       100 ---~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~  150 (219)
T 3dlc_A          100 ---GDVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILK-SGGKTYIGGGF  150 (219)
T ss_dssp             ---CBTTBCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEECC
T ss_pred             ---cCHHHCCCCcccccEEEECchHhhccCHHHHHHHHHHhCC-CCCEEEEEecc
Confidence               6677777888999999999999998 88999999999999 99999986643

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.76  E-value=5.4e-18  Score=141.84  Aligned_cols=129  Identities=16%  Similarity=0.183  Sum_probs=103.2

Q ss_pred             hHHHHHHHHHhhhCCCC-----cHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCc
Q 024647            3 ELFIKQAKQYAETRPNY-----PEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNI   77 (265)
Q Consensus         3 ~~f~~~a~~Y~~~rp~y-----~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~   77 (265)
                      ..|+..++.|++.....     .+.+.+.+....+++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.+++....
T Consensus        19 ~~~~~~a~~Yd~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~   98 (260)
T 2avn_A           19 EFYDRIARAYDSMYETPKWKLYHRLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVK   98 (260)
T ss_dssp             HHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHHHCCSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCS
T ss_pred             chhhHHHHHHHHhccccchhHHHHHHHHHHHHhcCCCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcCC
Confidence            57888999999865321     1234555555556778999999999999999999988999999999999999863222


Q ss_pred             eEEecCCccchhhhhhccCCCCceeEEEecc-ccccC-ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           78 RYELTSPAMSIAELEQNVAAQSTVDLVTIAQ-AMHWF-DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        78 ~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~-~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      .+..       +|+..+++++++||+|++.. ..|+. ++..+++++.++|+ |||.+++..++
T Consensus        99 ~~~~-------~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~  154 (260)
T 2avn_A           99 NVVE-------AKAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLV-PDGLLIATVDN  154 (260)
T ss_dssp             CEEE-------CCTTSCCSCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEE-EEEEEEEEEEB
T ss_pred             CEEE-------CcHHHCCCCCCCEEEEEEcchhhhccccHHHHHHHHHHHcC-CCeEEEEEeCC
Confidence            2555       66677777788999999986 56776 88899999999999 99999987654

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.75  E-value=6.7e-18  Score=140.63  Aligned_cols=122  Identities=18%  Similarity=0.168  Sum_probs=98.7

Q ss_pred             HHHHHhh---hCCCCcHHHHHHHHhhC---CCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC------
Q 024647            8 QAKQYAE---TRPNYPEELFKFITSKT---TNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL------   74 (265)
Q Consensus         8 ~a~~Y~~---~rp~y~~~l~~~l~~~~---~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~------   74 (265)
                      ..+.|+.   .+|.+ ......+....   +++.+|||+|||+|..+..+++.++ +|+|+|+|+.+++.+++.      
T Consensus        16 ~~~~~~~~~~~~~~~-~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~   94 (257)
T 3f4k_A           16 ICNYFKLLKRQGPGS-PEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANC   94 (257)
T ss_dssp             HHHHHTTSSCSSSCC-HHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCccccCCCC-HHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCC
Confidence            4444544   45664 44555555443   4667999999999999999999876 899999999999988752      


Q ss_pred             -CCceEEecCCccchhhhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647           75 -PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        75 -~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                       .++.+..       +|+..+++++++||+|++..++|++++..+++++.++|+ |||.+++.++
T Consensus        95 ~~~~~~~~-------~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~-pgG~l~~~~~  151 (257)
T 3f4k_A           95 ADRVKGIT-------GSMDNLPFQNEELDLIWSEGAIYNIGFERGMNEWSKYLK-KGGFIAVSEA  151 (257)
T ss_dssp             TTTEEEEE-------CCTTSCSSCTTCEEEEEEESCSCCCCHHHHHHHHHTTEE-EEEEEEEEEE
T ss_pred             CCceEEEE-------CChhhCCCCCCCEEEEEecChHhhcCHHHHHHHHHHHcC-CCcEEEEEEe
Confidence             2377777       667777778899999999999999999999999999999 9999998664

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.75  E-value=2.7e-18  Score=142.98  Aligned_cols=124  Identities=15%  Similarity=0.115  Sum_probs=98.8

Q ss_pred             HHHHHHHHhhhCCCCcHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhc-CCcEEEEcCCHHHHHHHHcC-------
Q 024647            5 FIKQAKQYAETRPNYPEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGI-FENVIGTETSPKQIEFATKL-------   74 (265)
Q Consensus         5 f~~~a~~Y~~~rp~y~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-------   74 (265)
                      |+.....+...+|.++ ..++.+....  +++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.+++.       
T Consensus         7 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~   85 (256)
T 1nkv_A            7 FTISESEHRIHNPFTE-EKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVS   85 (256)
T ss_dssp             HHHHTSSCSSSSSCCH-HHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCT
T ss_pred             cccccCCccccCCCCH-HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCC
Confidence            3333444555778765 4455555543  46789999999999999999987 45899999999999988752       


Q ss_pred             CCceEEecCCccchhhhhhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647           75 PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        75 ~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      .++.+..       +|+++++. +++||+|++..++|++ ++..+++++.++|| |||.+++..+
T Consensus        86 ~~v~~~~-------~d~~~~~~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~Lk-pgG~l~~~~~  141 (256)
T 1nkv_A           86 ERVHFIH-------NDAAGYVA-NEKCDVAACVGATWIAGGFAGAEELLAQSLK-PGGIMLIGEP  141 (256)
T ss_dssp             TTEEEEE-------SCCTTCCC-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEE-EEEEEEEEEE
T ss_pred             cceEEEE-------CChHhCCc-CCCCCEEEECCChHhcCCHHHHHHHHHHHcC-CCeEEEEecC
Confidence            3678887       56667765 7899999999999988 89999999999999 9999998654

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.75  E-value=1.2e-17  Score=136.20  Aligned_cols=131  Identities=16%  Similarity=0.214  Sum_probs=99.9

Q ss_pred             hHHHHHHHHHhhh--CCCCcH-------HHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc
Q 024647            3 ELFIKQAKQYAET--RPNYPE-------ELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK   73 (265)
Q Consensus         3 ~~f~~~a~~Y~~~--rp~y~~-------~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~   73 (265)
                      +.|+..+..|+..  ...+..       .+++.+..  .++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.+++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~   92 (227)
T 3e8s_A           15 DSWHQNAQAWIDAVRHGAIESRRQVTDQAILLAILG--RQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARA   92 (227)
T ss_dssp             HHHHHHHHHHHHHHHHTCCHHHHHTHHHHHHHHHHH--TCCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHhcccccccccccccHHHHHHhhc--CCCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence            5678888888762  122222       22333322  345899999999999999999998899999999999999998


Q ss_pred             CCCceEEecCCccchhhhhhccCC-CCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecCC
Q 024647           74 LPNIRYELTSPAMSIAELEQNVAA-QSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTV  140 (265)
Q Consensus        74 ~~~~~~~~~~~~~~~~d~~~~~~~-~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~~  140 (265)
                      ..++.+...+.    .++...+.. .++||+|++..++|+.++..+++++.++|+ |||.+++..+..
T Consensus        93 ~~~~~~~~~~~----~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~  155 (227)
T 3e8s_A           93 AGAGEVHLASY----AQLAEAKVPVGKDYDLICANFALLHQDIIELLSAMRTLLV-PGGALVIQTLHP  155 (227)
T ss_dssp             TCSSCEEECCH----HHHHTTCSCCCCCEEEEEEESCCCSSCCHHHHHHHHHTEE-EEEEEEEEECCT
T ss_pred             hcccccchhhH----HhhcccccccCCCccEEEECchhhhhhHHHHHHHHHHHhC-CCeEEEEEecCc
Confidence            77788887543    333222433 445999999999995599999999999999 999999987764

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.74  E-value=6.5e-18  Score=139.57  Aligned_cols=117  Identities=13%  Similarity=0.053  Sum_probs=95.0

Q ss_pred             hCCCCcHHHHHHHHhhC---CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhh
Q 024647           15 TRPNYPEELFKFITSKT---TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAEL   91 (265)
Q Consensus        15 ~rp~y~~~l~~~l~~~~---~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~   91 (265)
                      .++. .+.+.+.+....   +++.+|||||||+|.++..+++.+.+|+|+|+|+.|++.+++.  +.+..       +|+
T Consensus        21 ~~~~-~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~--~~~~~-------~d~   90 (240)
T 3dli_A           21 FRGS-RELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK--FNVVK-------SDA   90 (240)
T ss_dssp             HTCC-HHHHHHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTT--SEEEC-------SCH
T ss_pred             hCCC-HHHHHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhh--cceee-------ccH
Confidence            3554 455666665443   4668999999999999999999988999999999999999964  77776       455


Q ss_pred             hhc--cCCCCceeEEEeccccccC-Ch--hHHHHHHHHHhcCCCcEEEEEecCCCC
Q 024647           92 EQN--VAAQSTVDLVTIAQAMHWF-DL--PQFYNQVKWVLKKPNGVIATWCYTVPE  142 (265)
Q Consensus        92 ~~~--~~~~~~~Dlv~~~~~~~~~-~~--~~~l~~~~~~Lk~pgG~l~~~~~~~~~  142 (265)
                      .+.  ++++++||+|++..++|++ ++  ..+++++.++|| |||.+++..+....
T Consensus        91 ~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~  145 (240)
T 3dli_A           91 IEYLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMK-YSSYIVIESPNPTS  145 (240)
T ss_dssp             HHHHHTSCTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBC-TTCCEEEEEECTTS
T ss_pred             HHHhhhcCCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcC-CCcEEEEEeCCcch
Confidence            553  5678899999999999999 44  689999999999 99999997776443

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.74  E-value=7.1e-18  Score=140.30  Aligned_cols=105  Identities=19%  Similarity=0.260  Sum_probs=90.9

Q ss_pred             HHhhCC--CCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC---CCceEEecCCccchhhhhhccCCCCc
Q 024647           27 ITSKTT--NHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL---PNIRYELTSPAMSIAELEQNVAAQST  100 (265)
Q Consensus        27 l~~~~~--~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~---~~~~~~~~~~~~~~~d~~~~~~~~~~  100 (265)
                      +....+  ++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.+++.   .++.+..       +|+..+++++++
T Consensus        36 l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~-------~d~~~~~~~~~~  108 (253)
T 3g5l_A           36 LKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQ-------KAIEDIAIEPDA  108 (253)
T ss_dssp             HHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCCCTTEEEEE-------CCGGGCCCCTTC
T ss_pred             HHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhccCCeEEEE-------cchhhCCCCCCC
Confidence            444443  678999999999999999999987 899999999999999863   4677777       667778778899


Q ss_pred             eeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          101 VDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       101 ~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      ||+|++..++|++ ++..+++++.++|+ |||.+++..+.
T Consensus       109 fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~  147 (253)
T 3g5l_A          109 YNVVLSSLALHYIASFDDICKKVYINLK-SSGSFIFSVEH  147 (253)
T ss_dssp             EEEEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEEC
T ss_pred             eEEEEEchhhhhhhhHHHHHHHHHHHcC-CCcEEEEEeCC
Confidence            9999999999999 89999999999999 99999986553

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.74  E-value=1.8e-18  Score=140.73  Aligned_cols=100  Identities=23%  Similarity=0.296  Sum_probs=88.1

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC------CCceEEecCCccchhhhhhccCCCCcee
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAELEQNVAAQSTVD  102 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d~~~~~~~~~~~D  102 (265)
                      .++.+|||+|||+|.++..+++.+   .+|+|+|+|+.+++.+++.      +++.+..       +|+..+++++++||
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-------~d~~~~~~~~~~fD  108 (219)
T 3dh0_A           36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLK-------SEENKIPLPDNTVD  108 (219)
T ss_dssp             CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEE-------CBTTBCSSCSSCEE
T ss_pred             CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEe-------cccccCCCCCCCee
Confidence            566799999999999999999887   5899999999999988752      4677877       66777777888999


Q ss_pred             EEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          103 LVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       103 lv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +|++..++|++ ++..+++++.++|+ |||.+++..+.
T Consensus       109 ~v~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~  145 (219)
T 3dh0_A          109 FIFMAFTFHELSEPLKFLEELKRVAK-PFAYLAIIDWK  145 (219)
T ss_dssp             EEEEESCGGGCSSHHHHHHHHHHHEE-EEEEEEEEEEC
T ss_pred             EEEeehhhhhcCCHHHHHHHHHHHhC-CCeEEEEEEec
Confidence            99999999998 88999999999999 99999987654

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.74  E-value=7.1e-18  Score=140.57  Aligned_cols=110  Identities=12%  Similarity=-0.037  Sum_probs=87.6

Q ss_pred             cHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC-----------------------
Q 024647           20 PEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL-----------------------   74 (265)
Q Consensus        20 ~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----------------------   74 (265)
                      .+.+.+++....  .++.+|||+|||+|..+..|++.+.+|+|||+|+.|++.|++.                       
T Consensus        53 ~~~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (252)
T 2gb4_A           53 HQLLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSS  132 (252)
T ss_dssp             CHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETT
T ss_pred             CHHHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCC
Confidence            445666665432  4668999999999999999999999999999999999998642                       


Q ss_pred             CCceEEecCCccchhhhhhccCCC-CceeEEEeccccccCC---hhHHHHHHHHHhcCCCcEEEEEe
Q 024647           75 PNIRYELTSPAMSIAELEQNVAAQ-STVDLVTIAQAMHWFD---LPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        75 ~~~~~~~~~~~~~~~d~~~~~~~~-~~~Dlv~~~~~~~~~~---~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      .++.+.+       +|+.+++.++ ++||+|++..++|+++   ...+++++.++|| |||++++.+
T Consensus       133 ~~i~~~~-------~D~~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~Lk-pGG~l~l~~  191 (252)
T 2gb4_A          133 GSISLYC-------CSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLR-KEFQYLVAV  191 (252)
T ss_dssp             SSEEEEE-------SCTTTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred             CceEEEE-------CccccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcC-CCeEEEEEE
Confidence            2455555       6777776543 7999999999998884   3468999999999 999986543

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.73  E-value=1e-17  Score=141.07  Aligned_cols=100  Identities=19%  Similarity=0.240  Sum_probs=87.8

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC------CCceEEecCCccchhhhhhccCCCCceeE
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAELEQNVAAQSTVDL  103 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dl  103 (265)
                      +++.+|||||||+|.++..+++.+  .+|+|+|+|+.+++.+++.      +++.+..       +|+..+++++++||+
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-------~d~~~~~~~~~~fD~  108 (276)
T 3mgg_A           36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQ-------ANIFSLPFEDSSFDH  108 (276)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEE-------CCGGGCCSCTTCEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE-------cccccCCCCCCCeeE
Confidence            567899999999999999999985  5799999999999988752      5677777       667777778899999


Q ss_pred             EEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          104 VTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       104 v~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      |++..++|++ ++..+++++.++|+ |||.+++..+.
T Consensus       109 v~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~  144 (276)
T 3mgg_A          109 IFVCFVLEHLQSPEEALKSLKKVLK-PGGTITVIEGD  144 (276)
T ss_dssp             EEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEEC
T ss_pred             EEEechhhhcCCHHHHHHHHHHHcC-CCcEEEEEEcC
Confidence            9999999998 89999999999999 99999986543

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.73  E-value=1.3e-17  Score=137.52  Aligned_cols=99  Identities=24%  Similarity=0.280  Sum_probs=87.0

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC---CCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           33 NHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL---PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~---~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      ++.+|||+|||+|..+..+++.+. +|+|+|+|+.|++.+++.   .++.+..       +|+..+++++++||+|++..
T Consensus        43 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~-------~d~~~~~~~~~~fD~v~~~~  115 (243)
T 3bkw_A           43 GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTGITYER-------ADLDKLHLPQDSFDLAYSSL  115 (243)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCSSSEEEEE-------CCGGGCCCCTTCEEEEEEES
T ss_pred             CCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcccCCceEEE-------cChhhccCCCCCceEEEEec
Confidence            568999999999999999999887 899999999999999864   2566766       66677777788999999999


Q ss_pred             ccccC-ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          109 AMHWF-DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       109 ~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      ++|++ ++..+++++.++|+ |||.+++..+.
T Consensus       116 ~l~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~  146 (243)
T 3bkw_A          116 ALHYVEDVARLFRTVHQALS-PGGHFVFSTEH  146 (243)
T ss_dssp             CGGGCSCHHHHHHHHHHHEE-EEEEEEEEEEC
T ss_pred             cccccchHHHHHHHHHHhcC-cCcEEEEEeCC
Confidence            99998 88999999999999 99999986653

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.73  E-value=1.1e-17  Score=138.16  Aligned_cols=127  Identities=20%  Similarity=0.229  Sum_probs=100.7

Q ss_pred             HHHHHHHHHhhhCC--CCcHHHHHHHHhh----CCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC---
Q 024647            4 LFIKQAKQYAETRP--NYPEELFKFITSK----TTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL---   74 (265)
Q Consensus         4 ~f~~~a~~Y~~~rp--~y~~~l~~~l~~~----~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---   74 (265)
                      .|+..+..|+....  .......+.+...    .+++.+|||+|||+|.++..+++.+.+++|+|+|+.|++.+++.   
T Consensus         2 ~y~~~a~~yd~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~   81 (246)
T 1y8c_A            2 CYNKFAHIYDKLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRS   81 (246)
T ss_dssp             CHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHccccccHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhh
Confidence            58889999998654  2234444444333    23668999999999999999999988999999999999988752   


Q ss_pred             --CCceEEecCCccchhhhhhccCCCCceeEEEecc-ccccC----ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           75 --PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ-AMHWF----DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        75 --~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~-~~~~~----~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                        .++.+..       +|+.+++.+ ++||+|++.. ++|++    ++..+++++.++|+ |||.+++..+.
T Consensus        82 ~~~~~~~~~-------~d~~~~~~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~  144 (246)
T 1y8c_A           82 QGLKPRLAC-------QDISNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLK-EGGVFIFDINS  144 (246)
T ss_dssp             TTCCCEEEC-------CCGGGCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEE-EEEEEEEEEEC
T ss_pred             cCCCeEEEe-------cccccCCcc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcC-CCcEEEEEecC
Confidence              1577776       666777655 7899999998 99988    34579999999999 99999986554

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.73  E-value=1.6e-17  Score=136.98  Aligned_cols=126  Identities=17%  Similarity=0.262  Sum_probs=100.4

Q ss_pred             HHHHHHHHHhhhCCC-CcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC-----CCc
Q 024647            4 LFIKQAKQYAETRPN-YPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL-----PNI   77 (265)
Q Consensus         4 ~f~~~a~~Y~~~rp~-y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~   77 (265)
                      .|+..|..|+..... ......+.+....+++.+|||+|||+|.++..+++. .+|+|+|+|+.|++.+++.     .++
T Consensus         3 ~y~~~a~~yd~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~   81 (243)
T 3d2l_A            3 AYEQFAYVYDELMQDVPYPEWVAWVLEQVEPGKRIADIGCGTGTATLLLADH-YEVTGVDLSEEMLEIAQEKAMETNRHV   81 (243)
T ss_dssp             ---CTTHHHHHHTTTCCHHHHHHHHHHHSCTTCEEEEESCTTCHHHHHHTTT-SEEEEEESCHHHHHHHHHHHHHTTCCC
T ss_pred             hHHHHHHHHHHhhhcccHHHHHHHHHHHcCCCCeEEEecCCCCHHHHHHhhC-CeEEEEECCHHHHHHHHHhhhhcCCce
Confidence            578889999985442 235677778888887899999999999999999988 8999999999999988752     457


Q ss_pred             eEEecCCccchhhhhhccCCCCceeEEEecc-ccccC-C---hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           78 RYELTSPAMSIAELEQNVAAQSTVDLVTIAQ-AMHWF-D---LPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        78 ~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~-~~~~~-~---~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      .+..       +|+.+++.+ ++||+|++.. ++|++ +   ...+++++.++|+ |||.+++..+.
T Consensus        82 ~~~~-------~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~  139 (243)
T 3d2l_A           82 DFWV-------QDMRELELP-EPVDAITILCDSLNYLQTEADVKQTFDSAARLLT-DGGKLLFDVHS  139 (243)
T ss_dssp             EEEE-------CCGGGCCCS-SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEE-EEEEEEEEEEC
T ss_pred             EEEE-------cChhhcCCC-CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcC-CCeEEEEEcCC
Confidence            7777       566666654 7899999987 88887 3   3578999999999 99999985554

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.73  E-value=1e-17  Score=142.48  Aligned_cols=101  Identities=15%  Similarity=0.230  Sum_probs=76.3

Q ss_pred             CCCeEEEEcCCcchhHHHH----HhcCCc----EEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhcc--
Q 024647           33 NHELAWDVGTGSGQAAASL----SGIFEN----VIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNV--   95 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l----~~~~~~----v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~--   95 (265)
                      ++.+|||||||+|.++..+    +.+++.    ++|+|+|+.|++.|++.       .++.+....     +++++++  
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~-----~~~~~~~~~  126 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHK-----ETSSEYQSR  126 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEEC-----SCHHHHHHH
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEe-----cchhhhhhh
Confidence            4568999999999877644    333343    39999999999988642       244443221     3344332  


Q ss_pred             ----CCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           96 ----AAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        96 ----~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                          +++++||+|++..++||+ |+..+++++.++|| |||.+++....
T Consensus       127 ~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lk-pgG~l~i~~~~  174 (292)
T 2aot_A          127 MLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLG-TNAKMLIIVVS  174 (292)
T ss_dssp             HHTTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEE-EEEEEEEEEEC
T ss_pred             hccccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcC-CCcEEEEEEec
Confidence                457899999999999999 89999999999999 99999986554

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.73  E-value=1.2e-17  Score=142.48  Aligned_cols=126  Identities=13%  Similarity=0.115  Sum_probs=90.8

Q ss_pred             HHHHHH-HHHhhhCC--CCcHHHHHHHHhh-CCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC-----
Q 024647            4 LFIKQA-KQYAETRP--NYPEELFKFITSK-TTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL-----   74 (265)
Q Consensus         4 ~f~~~a-~~Y~~~rp--~y~~~l~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----   74 (265)
                      .|+..+ ..|+...+  .+ ......+... ..++.+|||||||+|.++..+++.+.+|+|+|+|+.|++.+++.     
T Consensus        50 ~y~~~~~~~y~~~~~~~~~-~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~  128 (299)
T 3g2m_A           50 FYDEGAADTYRDLIQDADG-TSEAREFATRTGPVSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAP  128 (299)
T ss_dssp             CC--------------CCC-HHHHHHHHHHHCCCCSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSC
T ss_pred             HHhHHHHHHHHHHhcccCc-cHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhcc
Confidence            455554 66777555  33 3444444444 34556999999999999999999999999999999999998752     


Q ss_pred             ----CCceEEecCCccchhhhhhccCCCCceeEEEec-cccccCCh---hHHHHHHHHHhcCCCcEEEEEecC
Q 024647           75 ----PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIA-QAMHWFDL---PQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        75 ----~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~-~~~~~~~~---~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                          .++.+.+       +|+.++++ +++||+|++. ..+|++++   ..+++++.++|+ |||.|++..+.
T Consensus       129 ~~~~~~v~~~~-------~d~~~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~  192 (299)
T 3g2m_A          129 ADVRDRCTLVQ-------GDMSAFAL-DKRFGTVVISSGSINELDEADRRGLYASVREHLE-PGGKFLLSLAM  192 (299)
T ss_dssp             HHHHTTEEEEE-------CBTTBCCC-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEE-EEEEEEEEEEC
T ss_pred             cccccceEEEe-------CchhcCCc-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcC-CCcEEEEEeec
Confidence                4577887       66777765 6899999965 57888864   689999999999 99999987765

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.72  E-value=2.1e-17  Score=134.62  Aligned_cols=125  Identities=18%  Similarity=0.205  Sum_probs=100.7

Q ss_pred             ChhHHHHHHHHHhhhC----CCCcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCCC
Q 024647            1 MAELFIKQAKQYAETR----PNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPN   76 (265)
Q Consensus         1 ~~~~f~~~a~~Y~~~r----p~y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~   76 (265)
                      |...|...++.|+..-    +.|. ..++.+....+ +.+|||+|||+|.++..+++.    +|+|+|+.|++.+++. +
T Consensus        13 ~~~~~~~~~~~y~~~~~~~~~~~~-~~~~~l~~~~~-~~~vLDiG~G~G~~~~~l~~~----~~vD~s~~~~~~a~~~-~   85 (219)
T 1vlm_A           13 MWHIFERFVNEYERWFLVHRFAYL-SELQAVKCLLP-EGRGVEIGVGTGRFAVPLKIK----IGVEPSERMAEIARKR-G   85 (219)
T ss_dssp             TTHHHHHTHHHHHHHHHHTHHHHH-HHHHHHHHHCC-SSCEEEETCTTSTTHHHHTCC----EEEESCHHHHHHHHHT-T
T ss_pred             heeecchhHHHHHHHHHhcchhHH-HHHHHHHHhCC-CCcEEEeCCCCCHHHHHHHHH----hccCCCHHHHHHHHhc-C
Confidence            4467888888888742    2332 23344544444 789999999999999999876    9999999999999875 6


Q ss_pred             ceEEecCCccchhhhhhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecCC
Q 024647           77 IRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTV  140 (265)
Q Consensus        77 ~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~  140 (265)
                      +.+..       +|+..+++++++||+|++..++|++ ++..+++++.++|+ |||.+++..+..
T Consensus        86 ~~~~~-------~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~i~~~~~  142 (219)
T 1vlm_A           86 VFVLK-------GTAENLPLKDESFDFALMVTTICFVDDPERALKEAYRILK-KGGYLIVGIVDR  142 (219)
T ss_dssp             CEEEE-------CBTTBCCSCTTCEEEEEEESCGGGSSCHHHHHHHHHHHEE-EEEEEEEEEECS
T ss_pred             CEEEE-------cccccCCCCCCCeeEEEEcchHhhccCHHHHHHHHHHHcC-CCcEEEEEEeCC
Confidence            77777       5667777777899999999999998 88999999999999 999999876653

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.72  E-value=2.1e-17  Score=134.96  Aligned_cols=111  Identities=21%  Similarity=0.272  Sum_probs=91.6

Q ss_pred             HHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC-----CCceEEecCCccchhhhhhcc
Q 024647           21 EELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL-----PNIRYELTSPAMSIAELEQNV   95 (265)
Q Consensus        21 ~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~d~~~~~   95 (265)
                      ..+.+.+....+++.+|||+|||+|.++..+++.+++++|+|+|+.+++.+++.     .++.+..       +|+.+++
T Consensus        26 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-------~d~~~~~   98 (227)
T 1ve3_A           26 ETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIV-------GDARKLS   98 (227)
T ss_dssp             HHHHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEE-------CCTTSCC
T ss_pred             HHHHHHHHHhcCCCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCceEEE-------CchhcCC
Confidence            344555666666788999999999999999999999999999999999988752     5677777       5666666


Q ss_pred             CCCCceeEEEeccc--cccC-ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           96 AAQSTVDLVTIAQA--MHWF-DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        96 ~~~~~~Dlv~~~~~--~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +++++||+|+++.+  +++. ++..+++++.++|+ |||.+++..+.
T Consensus        99 ~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~~~  144 (227)
T 1ve3_A           99 FEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLK-PSGKFIMYFTD  144 (227)
T ss_dssp             SCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEE-EEEEEEEEEEC
T ss_pred             CCCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcC-CCcEEEEEecC
Confidence            67789999999998  4444 66789999999999 99999987654

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.72  E-value=4.1e-17  Score=136.29  Aligned_cols=112  Identities=18%  Similarity=0.243  Sum_probs=93.8

Q ss_pred             cHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhc-CCcEEEEcCCHHHHHHHHcC----CCceEEecCCccchhhhh
Q 024647           20 PEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGI-FENVIGTETSPKQIEFATKL----PNIRYELTSPAMSIAELE   92 (265)
Q Consensus        20 ~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~d~~   92 (265)
                      .....+.+....  .++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.+++.    +++.+..       +|+.
T Consensus        40 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~-------~d~~  112 (266)
T 3ujc_A           40 GLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEA-------NDIL  112 (266)
T ss_dssp             HHHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSCTTEEEEE-------CCTT
T ss_pred             hHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEE-------Cccc
Confidence            345556665554  46679999999999999999987 67999999999999999864    4677777       6667


Q ss_pred             hccCCCCceeEEEeccccccC---ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           93 QNVAAQSTVDLVTIAQAMHWF---DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        93 ~~~~~~~~~Dlv~~~~~~~~~---~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      ++++++++||+|++..++|++   ++..+++++.++|+ |||.+++..+.
T Consensus       113 ~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~  161 (266)
T 3ujc_A          113 TKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLK-PTGTLLITDYC  161 (266)
T ss_dssp             TCCCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEEE
T ss_pred             cCCCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcC-CCCEEEEEEec
Confidence            777788999999999999998   56789999999999 99999987664

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.72  E-value=2.3e-17  Score=133.95  Aligned_cols=99  Identities=15%  Similarity=0.252  Sum_probs=85.1

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC----CCceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL----PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIA  107 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~  107 (265)
                      .++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.+++.    +++.+..       +|+.+++ ++++||+|++.
T Consensus        50 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~-------~d~~~~~-~~~~fD~v~~~  121 (216)
T 3ofk_A           50 GAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSHISWAA-------TDILQFS-TAELFDLIVVA  121 (216)
T ss_dssp             SSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTCSSEEEEE-------CCTTTCC-CSCCEEEEEEE
T ss_pred             CCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccCCCeEEEE-------cchhhCC-CCCCccEEEEc
Confidence            3557899999999999999999999999999999999998762    4677777       6667776 67899999999


Q ss_pred             cccccC-Ch---hHHHHHHHHHhcCCCcEEEEEecC
Q 024647          108 QAMHWF-DL---PQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       108 ~~~~~~-~~---~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      .++|++ ++   ..+++++.++|+ |||.+++..+.
T Consensus       122 ~~l~~~~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~  156 (216)
T 3ofk_A          122 EVLYYLEDMTQMRTAIDNMVKMLA-PGGHLVFGSAR  156 (216)
T ss_dssp             SCGGGSSSHHHHHHHHHHHHHTEE-EEEEEEEEEEC
T ss_pred             cHHHhCCCHHHHHHHHHHHHHHcC-CCCEEEEEecC
Confidence            999999 56   467999999999 99999986653

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.71  E-value=5.1e-17  Score=136.38  Aligned_cols=192  Identities=13%  Similarity=0.139  Sum_probs=122.6

Q ss_pred             HHHHHHHhhC-CCCCeEEEEcCCcchhHHHHHhc--CCcEEEEcCCHHHHHHHHc-CCCceEEecCCccchhhhhhccCC
Q 024647           22 ELFKFITSKT-TNHELAWDVGTGSGQAAASLSGI--FENVIGTETSPKQIEFATK-LPNIRYELTSPAMSIAELEQNVAA   97 (265)
Q Consensus        22 ~l~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~~~   97 (265)
                      .+.+.+.... .++.+|||+|||+|.++..+++.  +.+|+|+|+|+.|++.+++ .+++.+..       +|++.++++
T Consensus        73 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-------~d~~~~~~~  145 (269)
T 1p91_A           73 AIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCV-------ASSHRLPFS  145 (269)
T ss_dssp             HHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEE-------CCTTSCSBC
T ss_pred             HHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEE-------cchhhCCCC
Confidence            3444444444 46789999999999999999987  4689999999999999876 45677777       566677777


Q ss_pred             CCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHhhcccccCCCCCCcchhhhhhhhccCCC
Q 024647           98 QSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQPFYTVDSDPFWEPQRKLVDNKYMTI  177 (265)
Q Consensus        98 ~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (265)
                      +++||+|++..+      ..+++++.++|+ |||.+++..+....+ ..+..   ..+. ....+. .      ......
T Consensus       146 ~~~fD~v~~~~~------~~~l~~~~~~L~-pgG~l~~~~~~~~~~-~~~~~---~~~~-~~~~~~-~------~~~~~~  206 (269)
T 1p91_A          146 DTSMDAIIRIYA------PCKAEELARVVK-PGGWVITATPGPRHL-MELKG---LIYN-EVHLHA-P------HAEQLE  206 (269)
T ss_dssp             TTCEEEEEEESC------CCCHHHHHHHEE-EEEEEEEEEECTTTT-HHHHT---TTCS-SCCCCC-C------CCCCCT
T ss_pred             CCceeEEEEeCC------hhhHHHHHHhcC-CCcEEEEEEcCHHHH-HHHHH---Hhhc-cccccc-c------hhhHhc
Confidence            889999998654      346899999999 999999987765443 22221   1111 111100 0      011111


Q ss_pred             CCCCCCCCCCCCCCCCccceeeeccCHHHHHHHHHhhhHHHHHHHhCCccchHHHHHHHHHHhccCCCccEEEEEeeEEE
Q 024647          178 DFPFEPVDGADSTGPFDRFVIEKTMDLEGYFSYIRSWSAYQTAKDKGVELLTENVIENFRRAWNEDGQSRKVVRFPIYLR  257 (265)
Q Consensus       178 ~~~f~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  257 (265)
                      +  |+.++..       .+.....++.+++.+++++.+...        .+.++.++.+.+.    +  ...+++.+.+.
T Consensus       207 g--f~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~----~--~~~~t~~~~i~  263 (269)
T 1p91_A          207 G--FTLQQSA-------ELCYPMRLRGDEAVALLQMTPFAW--------RAKPEVWQTLAAK----E--VFDCQTDFNIH  263 (269)
T ss_dssp             T--EEEEEEE-------EEEEEEEEEHHHHHHHHHTSTTGG--------GCCHHHHHHHHHC----S--EEEEEEEEEEE
T ss_pred             C--CcEEEEE-------EEEEEEEcCHHHHHHHhccCCceE--------CCCHHHHHHHhcC----C--CceEEEEEEEE
Confidence            1  3222211       334455556777777777644322        2233344444332    2  36788889999


Q ss_pred             EeecC
Q 024647          258 IGKVG  262 (265)
Q Consensus       258 ~ark~  262 (265)
                      ++||.
T Consensus       264 ~~~k~  268 (269)
T 1p91_A          264 LWQRS  268 (269)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            88873

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.71  E-value=1.6e-17  Score=135.11  Aligned_cols=112  Identities=18%  Similarity=0.179  Sum_probs=89.4

Q ss_pred             CCcHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC-----------CCceEEec
Q 024647           18 NYPEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL-----------PNIRYELT   82 (265)
Q Consensus        18 ~y~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-----------~~~~~~~~   82 (265)
                      .+.++..+++....  .++.+|||+|||+|.++..+++.+  .+|+|+|+|+.|++.+++.           .++.+.. 
T Consensus        12 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~-   90 (217)
T 3jwh_A           12 SLNQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQ-   90 (217)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEE-
T ss_pred             CHHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEe-
Confidence            44556666665554  456899999999999999999987  4899999999999998752           1677777 


Q ss_pred             CCccchhhhhhccCCCCceeEEEeccccccCC-h--hHHHHHHHHHhcCCCcEEEEEe
Q 024647           83 SPAMSIAELEQNVAAQSTVDLVTIAQAMHWFD-L--PQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        83 ~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~-~--~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                            +|+...+.+.++||+|++..++|+++ +  ..+++++.++|+ |||.+++..
T Consensus        91 ------~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~li~~~  141 (217)
T 3jwh_A           91 ------GALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQ-PKIVIVTTP  141 (217)
T ss_dssp             ------CCTTSCCGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTC-CSEEEEEEE
T ss_pred             ------CCcccccccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcC-CCEEEEEcc
Confidence                  55555555667999999999999994 3  589999999999 999776643

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.71  E-value=6.5e-17  Score=132.50  Aligned_cols=119  Identities=18%  Similarity=0.236  Sum_probs=97.1

Q ss_pred             HHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC---C--------CceEEecCCccchhh
Q 024647           22 ELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL---P--------NIRYELTSPAMSIAE   90 (265)
Q Consensus        22 ~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---~--------~~~~~~~~~~~~~~d   90 (265)
                      .+...+....+++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.+++.   .        ++.+..       +|
T Consensus        19 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------~d   91 (235)
T 3sm3_A           19 DLYPIIHNYLQEDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKV-------EN   91 (235)
T ss_dssp             CCCTTHHHHCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEE-------CC
T ss_pred             HHHHHHHHhCCCCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEE-------ec
Confidence            33445556667889999999999999999999988999999999999998762   1        346666       66


Q ss_pred             hhhccCCCCceeEEEeccccccC-Chh---HHHHHHHHHhcCCCcEEEEEecCCCCCChHHH
Q 024647           91 LEQNVAAQSTVDLVTIAQAMHWF-DLP---QFYNQVKWVLKKPNGVIATWCYTVPEVNVSVD  148 (265)
Q Consensus        91 ~~~~~~~~~~~Dlv~~~~~~~~~-~~~---~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~  148 (265)
                      +..+++++++||+|++..++|++ ++.   .+++++.++|+ |||.+++..+........+.
T Consensus        92 ~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~  152 (235)
T 3sm3_A           92 ASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLK-PGAYLYLVEFGQNWHLKLYR  152 (235)
T ss_dssp             TTSCCSCTTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEE-EEEEEEEEEEBCCTTSHHHH
T ss_pred             ccccCCCCCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcC-CCeEEEEEECCcchhHHHHH
Confidence            67777778899999999999998 777   89999999999 99999998776544444333

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.71  E-value=4.5e-17  Score=139.83  Aligned_cols=100  Identities=17%  Similarity=0.199  Sum_probs=88.2

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhc-CCcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCCCCceeE
Q 024647           32 TNHELAWDVGTGSGQAAASLSGI-FENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAAQSTVDL  103 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dl  103 (265)
                      .++.+|||+|||+|.++..++++ +.+|+|+|+|+.|++.|++.       .++.+..       +|+.++++++++||+
T Consensus       116 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~-------~d~~~~~~~~~~fD~  188 (312)
T 3vc1_A          116 GPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRV-------CNMLDTPFDKGAVTA  188 (312)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE-------CCTTSCCCCTTCEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEE-------CChhcCCCCCCCEeE
Confidence            35689999999999999999988 77999999999999988752       3678887       666777778889999


Q ss_pred             EEeccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          104 VTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       104 v~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      |++..++|++++..+++++.++|| |||.+++.++.
T Consensus       189 V~~~~~l~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~  223 (312)
T 3vc1_A          189 SWNNESTMYVDLHDLFSEHSRFLK-VGGRYVTITGC  223 (312)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHEE-EEEEEEEEEEE
T ss_pred             EEECCchhhCCHHHHHHHHHHHcC-CCcEEEEEEcc
Confidence            999999999999999999999999 99999986654

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.71  E-value=5.8e-17  Score=143.09  Aligned_cols=100  Identities=22%  Similarity=0.287  Sum_probs=86.3

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC--------------CCceEEecCCccchhhhhhc
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL--------------PNIRYELTSPAMSIAELEQN   94 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~--------------~~~~~~~~~~~~~~~d~~~~   94 (265)
                      .++.+|||+|||+|..+..+++..   .+|+|+|+|+.|++.+++.              +++.+..       +|++++
T Consensus        82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~-------~d~~~l  154 (383)
T 4fsd_A           82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLK-------GFIENL  154 (383)
T ss_dssp             GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEE-------SCTTCG
T ss_pred             CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEE-------ccHHHh
Confidence            356899999999999999998864   3899999999999998863              5788888       445554


Q ss_pred             ------cCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           95 ------VAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        95 ------~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                            ++++++||+|+++.++|++ |+..+++++.++|| |||.|++..+.
T Consensus       155 ~~~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lk-pgG~l~i~~~~  205 (383)
T 4fsd_A          155 ATAEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLR-DGGELYFSDVY  205 (383)
T ss_dssp             GGCBSCCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEEE
T ss_pred             hhcccCCCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcC-CCCEEEEEEec
Confidence                  7788899999999999998 99999999999999 99999986553

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.70  E-value=3.3e-17  Score=134.77  Aligned_cols=127  Identities=18%  Similarity=0.275  Sum_probs=98.6

Q ss_pred             HHH-HHHHHHhhhC----CCCcH---HHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc-C
Q 024647            4 LFI-KQAKQYAETR----PNYPE---ELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK-L   74 (265)
Q Consensus         4 ~f~-~~a~~Y~~~r----p~y~~---~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-~   74 (265)
                      .|+ ..+..|+..-    +.|..   .+.+.+....+++.+|||+|||+|..+..+++.+.+|+|+|+|+.|++.+++ .
T Consensus         3 ~y~~~~a~~yd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~   82 (239)
T 3bxo_A            3 MYEVDHADVYDLFYLGRGKDYAAEASDIADLVRSRTPEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRL   82 (239)
T ss_dssp             -CCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHC
T ss_pred             cccchhHHHHHHHhhccHhhHHHHHHHHHHHHHHhcCCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhC
Confidence            455 6677777742    44432   3445555555677899999999999999999998899999999999999886 4


Q ss_pred             CCceEEecCCccchhhhhhccCCCCceeEEEecc-ccccC-C---hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           75 PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ-AMHWF-D---LPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        75 ~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~-~~~~~-~---~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +++.+..       +|+.+++. +++||+|+|.. ++|++ +   ...+++++.++|+ |||.+++..+.
T Consensus        83 ~~~~~~~-------~d~~~~~~-~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~  143 (239)
T 3bxo_A           83 PDATLHQ-------GDMRDFRL-GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLE-PGGVVVVEPWW  143 (239)
T ss_dssp             TTCEEEE-------CCTTTCCC-SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEE-EEEEEEECCCC
T ss_pred             CCCEEEE-------CCHHHccc-CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcC-CCeEEEEEecc
Confidence            6788877       56666655 67899999655 88887 4   3579999999999 99999986544

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.70  E-value=5.6e-17  Score=137.76  Aligned_cols=112  Identities=17%  Similarity=0.138  Sum_probs=91.2

Q ss_pred             cHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC----------CCceEEecCCccc
Q 024647           20 PEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL----------PNIRYELTSPAMS   87 (265)
Q Consensus        20 ~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~~   87 (265)
                      .....+++....  .++.+|||+|||+|..+..+++.+.+|+|+|+|+.|++.+++.          .++.+..      
T Consensus        42 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~------  115 (293)
T 3thr_A           42 TAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEE------  115 (293)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEE------
T ss_pred             HHHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEee------
Confidence            355556665543  4568999999999999999999999999999999999988641          3566666      


Q ss_pred             hhhhhhcc---CCCCceeEEEec-cccccC-C-------hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           88 IAELEQNV---AAQSTVDLVTIA-QAMHWF-D-------LPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        88 ~~d~~~~~---~~~~~~Dlv~~~-~~~~~~-~-------~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                       +|+..++   +++++||+|++. .++|++ +       +..+++++.++|| |||.+++..++
T Consensus       116 -~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~  177 (293)
T 3thr_A          116 -ANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVR-PGGLLVIDHRN  177 (293)
T ss_dssp             -CCGGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEE-EEEEEEEEEEC
T ss_pred             -cChhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcC-CCeEEEEEeCC
Confidence             4455554   677899999998 789888 7       7899999999999 99999987654

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.70  E-value=4.2e-17  Score=127.39  Aligned_cols=105  Identities=16%  Similarity=0.204  Sum_probs=89.5

Q ss_pred             HHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc-CCCceEEecCCccchhhhhhccCCCCc
Q 024647           22 ELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK-LPNIRYELTSPAMSIAELEQNVAAQST  100 (265)
Q Consensus        22 ~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~  100 (265)
                      ++++.+.  ..++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.+++ .+++.+..       +|   .++++++
T Consensus         8 ~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~v~~~~-------~d---~~~~~~~   75 (170)
T 3i9f_A            8 EYLPNIF--EGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEKFDSVITLS-------DP---KEIPDNS   75 (170)
T ss_dssp             TTHHHHH--SSCCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHHCTTSEEES-------SG---GGSCTTC
T ss_pred             HHHHhcC--cCCCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHhCCCcEEEe-------CC---CCCCCCc
Confidence            4444442  3566789999999999999999988899999999999999876 46777776       55   5567889


Q ss_pred             eeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          101 VDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       101 ~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      ||+|+++.++|++ ++..+++++.++|+ |||.+++..+.
T Consensus        76 ~D~v~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~  114 (170)
T 3i9f_A           76 VDFILFANSFHDMDDKQHVISEVKRILK-DDGRVIIIDWR  114 (170)
T ss_dssp             EEEEEEESCSTTCSCHHHHHHHHHHHEE-EEEEEEEEEEC
T ss_pred             eEEEEEccchhcccCHHHHHHHHHHhcC-CCCEEEEEEcC
Confidence            9999999999999 89999999999999 99999987664

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.70  E-value=6.9e-17  Score=134.17  Aligned_cols=99  Identities=23%  Similarity=0.294  Sum_probs=84.9

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcC-CcEEEEcCCHHHHHHHHcC----CCceEEecCCccchhhhhhccCCCCceeEEEe
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIF-ENVIGTETSPKQIEFATKL----PNIRYELTSPAMSIAELEQNVAAQSTVDLVTI  106 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~  106 (265)
                      .++.+|||+|||+|.++..+++.+ .+|+++|+|+.|++.+++.    .++.+..       +|+..+++++++||+|++
T Consensus        92 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~-------~d~~~~~~~~~~fD~v~~  164 (254)
T 1xtp_A           92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFIL-------ASMETATLPPNTYDLIVI  164 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEE-------SCGGGCCCCSSCEEEEEE
T ss_pred             cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccCCceEEEE-------ccHHHCCCCCCCeEEEEE
Confidence            356899999999999999999875 4699999999999998863    3567766       667777777889999999


Q ss_pred             ccccccCC---hhHHHHHHHHHhcCCCcEEEEEec
Q 024647          107 AQAMHWFD---LPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       107 ~~~~~~~~---~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      ..++|+++   +..+++++.++|+ |||.+++..+
T Consensus       165 ~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~  198 (254)
T 1xtp_A          165 QWTAIYLTDADFVKFFKHCQQALT-PNGYIFFKEN  198 (254)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred             cchhhhCCHHHHHHHHHHHHHhcC-CCeEEEEEec
Confidence            99999983   5689999999999 9999998664

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.69  E-value=6.3e-17  Score=133.71  Aligned_cols=99  Identities=20%  Similarity=0.221  Sum_probs=83.3

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcC-CcEEEEcCCHHHHHHHHcC------CCceEEecCCccchhhhhhccCCCCceeEEE
Q 024647           33 NHELAWDVGTGSGQAAASLSGIF-ENVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAELEQNVAAQSTVDLVT  105 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~  105 (265)
                      ++.+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.+++.      .++.+..       +|+..++.++++||+|+
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-------~d~~~~~~~~~~fD~v~  151 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFC-------CGLQDFTPEPDSYDVIW  151 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEE-------CCGGGCCCCSSCEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEE-------cChhhcCCCCCCEEEEE
Confidence            47899999999999999998875 4899999999999998753      1355666       66777777777999999


Q ss_pred             eccccccC-Chh--HHHHHHHHHhcCCCcEEEEEecC
Q 024647          106 IAQAMHWF-DLP--QFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       106 ~~~~~~~~-~~~--~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +..++|++ ++.  .+++++.++|+ |||.+++.++.
T Consensus       152 ~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~  187 (241)
T 2ex4_A          152 IQWVIGHLTDQHLAEFLRRCKGSLR-PNGIIVIKDNM  187 (241)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEEE
T ss_pred             EcchhhhCCHHHHHHHHHHHHHhcC-CCeEEEEEEcc
Confidence            99999998 433  79999999999 99999986654

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.69  E-value=1.1e-16  Score=135.51  Aligned_cols=112  Identities=13%  Similarity=0.188  Sum_probs=93.3

Q ss_pred             CcHHHHHHHHhhC---CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC-----CCceEEecCCccc
Q 024647           19 YPEELFKFITSKT---TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL-----PNIRYELTSPAMS   87 (265)
Q Consensus        19 y~~~l~~~l~~~~---~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~   87 (265)
                      |.+..++.+....   .++.+|||+|||+|..+..+++.+   .+|+|+|+|+.|++.+++.     .++.+..      
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~------   78 (284)
T 3gu3_A            5 YNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLE------   78 (284)
T ss_dssp             CCHHHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEE------
T ss_pred             cchHHHHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEE------
Confidence            4566677766553   467899999999999999999874   5799999999999988752     2677777      


Q ss_pred             hhhhhhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           88 IAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        88 ~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                       +|+.+++. +++||+|++..++|++ ++..+++++.++|+ |||.+++..+.
T Consensus        79 -~d~~~~~~-~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~  128 (284)
T 3gu3_A           79 -GDATEIEL-NDKYDIAICHAFLLHMTTPETMLQKMIHSVK-KGGKIICFEPH  128 (284)
T ss_dssp             -SCTTTCCC-SSCEEEEEEESCGGGCSSHHHHHHHHHHTEE-EEEEEEEEECC
T ss_pred             -cchhhcCc-CCCeeEEEECChhhcCCCHHHHHHHHHHHcC-CCCEEEEEecc
Confidence             66677765 4699999999999998 89999999999999 99999987654

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.69  E-value=3.3e-17  Score=139.15  Aligned_cols=101  Identities=14%  Similarity=0.142  Sum_probs=84.6

Q ss_pred             CCCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccC-CCCce
Q 024647           31 TTNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVA-AQSTV  101 (265)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~-~~~~~  101 (265)
                      .+++.+|||+|||+|..+..+++.+. +|+|+|+|+.|++.+++.       .++.+..       +|+...++ ++++|
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~-------~d~~~~~~~~~~~f  134 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRA-------QDSYGRHMDLGKEF  134 (298)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEE-------SCTTTSCCCCSSCE
T ss_pred             CCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEE-------CCccccccCCCCCc
Confidence            46778999999999999999988765 899999999999988752       2467777       56666665 57899


Q ss_pred             eEEEecccccc----C-ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          102 DLVTIAQAMHW----F-DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       102 Dlv~~~~~~~~----~-~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      |+|++..++|+    . ++..+++++.++|+ |||.+++..+.
T Consensus       135 D~v~~~~~l~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~  176 (298)
T 1ri5_A          135 DVISSQFSFHYAFSTSESLDIAQRNIARHLR-PGGYFIMTVPS  176 (298)
T ss_dssp             EEEEEESCGGGGGSSHHHHHHHHHHHHHTEE-EEEEEEEEEEC
T ss_pred             CEEEECchhhhhcCCHHHHHHHHHHHHHhcC-CCCEEEEEECC
Confidence            99999999988    2 45689999999999 99999987765

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.69  E-value=1.3e-16  Score=126.46  Aligned_cols=106  Identities=14%  Similarity=0.153  Sum_probs=80.3

Q ss_pred             HHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC------CCceEEecCCccchhhhhhcc-CCC
Q 024647           26 FITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAELEQNV-AAQ   98 (265)
Q Consensus        26 ~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d~~~~~-~~~   98 (265)
                      ++....+++.+|||+|||+|..+..+++.+.+|+|+|+|+.|++.|++.      .++.+...       +.+.++ ..+
T Consensus        15 ~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~-------~~~~l~~~~~   87 (185)
T 3mti_A           15 FLAEVLDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELILD-------GHENLDHYVR   87 (185)
T ss_dssp             HHHTTCCTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEES-------CGGGGGGTCC
T ss_pred             HHHHhCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeC-------cHHHHHhhcc
Confidence            3444456788999999999999999999988999999999999998752      56788773       334432 346


Q ss_pred             CceeEEEecc-cccc-------C--ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           99 STVDLVTIAQ-AMHW-------F--DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        99 ~~~Dlv~~~~-~~~~-------~--~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      ++||+|+++. .++.       .  +...+++++.++|| |||.+++..+.
T Consensus        88 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~  137 (185)
T 3mti_A           88 EPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLE-VGGRLAIMIYY  137 (185)
T ss_dssp             SCEEEEEEEEC-----------CHHHHHHHHHHHHHHEE-EEEEEEEEEC-
T ss_pred             CCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcC-CCcEEEEEEeC
Confidence            7899999874 3332       1  23468899999999 99999987664

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.69  E-value=6.4e-17  Score=130.75  Aligned_cols=114  Identities=16%  Similarity=0.179  Sum_probs=94.4

Q ss_pred             cHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC----CCceEEecCCccchhhhhhc
Q 024647           20 PEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL----PNIRYELTSPAMSIAELEQN   94 (265)
Q Consensus        20 ~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~d~~~~   94 (265)
                      ...+.+.+....+++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.+++.    +++.+..       +|+..+
T Consensus        29 ~~~~~~~l~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~-------~d~~~~  101 (215)
T 2pxx_A           29 FSSFRALLEPELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQLRWET-------MDVRKL  101 (215)
T ss_dssp             HHHHHHHHGGGCCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTCTTCEEEE-------CCTTSC
T ss_pred             HHHHHHHHHHhcCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccCCCcEEEE-------cchhcC
Confidence            3467777777777888999999999999999999876 899999999999998763    4677777       566666


Q ss_pred             cCCCCceeEEEeccccccC----------------ChhHHHHHHHHHhcCCCcEEEEEecCCC
Q 024647           95 VAAQSTVDLVTIAQAMHWF----------------DLPQFYNQVKWVLKKPNGVIATWCYTVP  141 (265)
Q Consensus        95 ~~~~~~~Dlv~~~~~~~~~----------------~~~~~l~~~~~~Lk~pgG~l~~~~~~~~  141 (265)
                      ++++++||+|++..+++.+                +...+++++.++|+ |||.+++..+..+
T Consensus       102 ~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~li~~~~~~~  163 (215)
T 2pxx_A          102 DFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLV-PGGRFISMTSAAP  163 (215)
T ss_dssp             CSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEE-EEEEEEEEESCCH
T ss_pred             CCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCc-CCCEEEEEeCCCc
Confidence            7778899999998877543                34689999999999 9999999887643

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.68  E-value=2.1e-16  Score=130.02  Aligned_cols=111  Identities=15%  Similarity=0.197  Sum_probs=90.3

Q ss_pred             cHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhh
Q 024647           20 PEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELE   92 (265)
Q Consensus        20 ~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~   92 (265)
                      .+.+.+++.....++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.+++.       .++.+..       +|+.
T Consensus        53 ~~~l~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~-------~d~~  125 (235)
T 3lcc_A           53 TPLIVHLVDTSSLPLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVK-------EDVF  125 (235)
T ss_dssp             CHHHHHHHHTTCSCCEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEEC-------CCTT
T ss_pred             CHHHHHHHHhcCCCCCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEE-------Cchh
Confidence            3556666655444556999999999999999999888999999999999998752       2367777       5666


Q ss_pred             hccCCCCceeEEEeccccccCC---hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           93 QNVAAQSTVDLVTIAQAMHWFD---LPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        93 ~~~~~~~~~Dlv~~~~~~~~~~---~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +++ ++++||+|++..++|+++   ...+++++.++|+ |||.+++..+.
T Consensus       126 ~~~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~  173 (235)
T 3lcc_A          126 TWR-PTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLK-PDGELITLMYP  173 (235)
T ss_dssp             TCC-CSSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEE-EEEEEEEEECC
T ss_pred             cCC-CCCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCC-CCcEEEEEEec
Confidence            665 556999999999999884   5679999999999 99999986664

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.68  E-value=9.3e-17  Score=130.66  Aligned_cols=108  Identities=19%  Similarity=0.180  Sum_probs=86.4

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC-----------CCceEEecCCc
Q 024647           21 EELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL-----------PNIRYELTSPA   85 (265)
Q Consensus        21 ~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-----------~~~~~~~~~~~   85 (265)
                      +...+++....  .++.+|||+|||+|.++..+++.+  .+|+|+|+|+.|++.+++.           .++.+..    
T Consensus        15 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~----   90 (219)
T 3jwg_A           15 QQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQ----   90 (219)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEE----
T ss_pred             HHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEe----
Confidence            44445554443  456899999999999999999987  4899999999999998752           1678887    


Q ss_pred             cchhhhhhccCCCCceeEEEeccccccCCh---hHHHHHHHHHhcCCCcEEEEE
Q 024647           86 MSIAELEQNVAAQSTVDLVTIAQAMHWFDL---PQFYNQVKWVLKKPNGVIATW  136 (265)
Q Consensus        86 ~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~---~~~l~~~~~~Lk~pgG~l~~~  136 (265)
                         +|+...+.++++||+|++..++|+++.   ..+++++.++|+ |||.++..
T Consensus        91 ---~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~~i~~  140 (219)
T 3jwg_A           91 ---SSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTR-PQTVIVST  140 (219)
T ss_dssp             ---CCSSSCCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTC-CSEEEEEE
T ss_pred             ---CcccccccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhC-CCEEEEEc
Confidence               555556556689999999999999943   489999999999 99966553

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.68  E-value=1.9e-16  Score=135.21  Aligned_cols=106  Identities=21%  Similarity=0.236  Sum_probs=86.8

Q ss_pred             HHHHhhC--CCCCeEEEEcCCcchhHHHHHhc-CCcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhc
Q 024647           25 KFITSKT--TNHELAWDVGTGSGQAAASLSGI-FENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQN   94 (265)
Q Consensus        25 ~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~   94 (265)
                      +.+....  .++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.+++.       .++.+..       +|+.++
T Consensus        62 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~-------~d~~~~  134 (302)
T 3hem_A           62 KLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRI-------QGWEEF  134 (302)
T ss_dssp             HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEE-------CCGGGC
T ss_pred             HHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEE-------CCHHHc
Confidence            3444443  46679999999999999999988 67899999999999988752       2577777       555554


Q ss_pred             cCCCCceeEEEeccccccC-Ch---------hHHHHHHHHHhcCCCcEEEEEecCCC
Q 024647           95 VAAQSTVDLVTIAQAMHWF-DL---------PQFYNQVKWVLKKPNGVIATWCYTVP  141 (265)
Q Consensus        95 ~~~~~~~Dlv~~~~~~~~~-~~---------~~~l~~~~~~Lk~pgG~l~~~~~~~~  141 (265)
                         +++||+|++..++|++ |+         ..+++++.++|| |||.+++..+..+
T Consensus       135 ---~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~  187 (302)
T 3hem_A          135 ---DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTP-DDGRMLLHTITIP  187 (302)
T ss_dssp             ---CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSC-TTCEEEEEEEECC
T ss_pred             ---CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcC-CCcEEEEEEEecc
Confidence               6799999999999988 65         589999999999 9999998766533

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.68  E-value=8.5e-17  Score=134.22  Aligned_cols=127  Identities=9%  Similarity=-0.072  Sum_probs=88.2

Q ss_pred             hHHHHHHHHHhhhCCCCc-HHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceE
Q 024647            3 ELFIKQAKQYAETRPNYP-EELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRY   79 (265)
Q Consensus         3 ~~f~~~a~~Y~~~rp~y~-~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~   79 (265)
                      +.|+..+..|.+....-. +...+.+....  .++.+|||||||+|.++..+++++.+|+|+|+|+.|++.|++......
T Consensus        12 ~~wd~~a~~f~~~~~~~~~~~~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~~   91 (261)
T 3iv6_A           12 EAWELIGNQFWTIGRVAARPSDRENDIFLENIVPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADRC   91 (261)
T ss_dssp             HHHHTTTTHHHHTSCGGGSCCHHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSSC
T ss_pred             hHHHHHHHHHHHHhhccccHHHHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcc
Confidence            456666666655332110 23334444433  467899999999999999999999999999999999999986321111


Q ss_pred             EecCCccchhhhhhccC-----CCCceeEEEeccccccCC---hhHHHHHHHHHhcCCCcEEEEEec
Q 024647           80 ELTSPAMSIAELEQNVA-----AQSTVDLVTIAQAMHWFD---LPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        80 ~~~~~~~~~~d~~~~~~-----~~~~~Dlv~~~~~~~~~~---~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      ..       .++.++..     .+++||+|+++.++|++.   ...++.++.++|  |||.+++...
T Consensus        92 v~-------~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL--PGG~l~lS~~  149 (261)
T 3iv6_A           92 VT-------IDLLDITAEIPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV--GSGTVRASVK  149 (261)
T ss_dssp             CE-------EEECCTTSCCCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH--TTSEEEEEEE
T ss_pred             ce-------eeeeecccccccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC--cCcEEEEEec
Confidence            22       22222221     246899999999999873   346899999998  5999998654

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.67  E-value=1.4e-16  Score=130.02  Aligned_cols=123  Identities=22%  Similarity=0.224  Sum_probs=90.6

Q ss_pred             HHHhhhCCCCcHHHHHHHHhhC-CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccch
Q 024647           10 KQYAETRPNYPEELFKFITSKT-TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSI   88 (265)
Q Consensus        10 ~~Y~~~rp~y~~~l~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~   88 (265)
                      ..|++....|...+...+.... .++.+|||+|||+|..+..+++.+.+++|+|+|+.+++.+++.. ..+..       
T Consensus         8 ~~y~~~~~~~~~~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~-~~~~~-------   79 (230)
T 3cc8_A            8 SLYEEKSGHYYNAVNPNLLKHIKKEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKL-DHVVL-------   79 (230)
T ss_dssp             ------------CCCHHHHTTCCTTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTS-SEEEE-------
T ss_pred             hhhhccchhHHHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC-CcEEE-------
Confidence            3454444444444444555544 46789999999999999999988778999999999999998642 35666       


Q ss_pred             hhhhh--ccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecCCC
Q 024647           89 AELEQ--NVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTVP  141 (265)
Q Consensus        89 ~d~~~--~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~~  141 (265)
                      +|+.+  .++++++||+|++..++|++ ++..+++++.++|+ |||.+++..+...
T Consensus        80 ~d~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~-~gG~l~~~~~~~~  134 (230)
T 3cc8_A           80 GDIETMDMPYEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIK-QNGVILASIPNVS  134 (230)
T ss_dssp             SCTTTCCCCSCTTCEEEEEEESCGGGSSCHHHHHHHTGGGEE-EEEEEEEEEECTT
T ss_pred             cchhhcCCCCCCCccCEEEECChhhhcCCHHHHHHHHHHHcC-CCCEEEEEeCCcc
Confidence            44444  45567899999999999988 88999999999999 9999998776543

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.67  E-value=5.3e-16  Score=123.90  Aligned_cols=108  Identities=14%  Similarity=0.240  Sum_probs=88.1

Q ss_pred             HHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC------CCceEEecCCccchhhhhhc
Q 024647           21 EELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAELEQN   94 (265)
Q Consensus        21 ~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d~~~~   94 (265)
                      +.+.+.+. . .++.+|||+|||+|..+..+++.+.+|+|+|+|+.+++.+++.      +++.+..       +|+.++
T Consensus        22 ~~l~~~~~-~-~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-------~d~~~~   92 (199)
T 2xvm_A           22 SEVLEAVK-V-VKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRV-------VDLNNL   92 (199)
T ss_dssp             HHHHHHTT-T-SCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEE-------CCGGGC
T ss_pred             HHHHHHhh-c-cCCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEE-------cchhhC
Confidence            45555442 2 3557999999999999999999988999999999999988752      3677777       666777


Q ss_pred             cCCCCceeEEEeccccccCC---hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           95 VAAQSTVDLVTIAQAMHWFD---LPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        95 ~~~~~~~Dlv~~~~~~~~~~---~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +. +++||+|++..++|+++   ...+++++.++|+ |||.+++....
T Consensus        93 ~~-~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~~~  138 (199)
T 2xvm_A           93 TF-DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTK-PGGYNLIVAAM  138 (199)
T ss_dssp             CC-CCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEE-EEEEEEEEEEB
T ss_pred             CC-CCCceEEEEcchhhhCCHHHHHHHHHHHHHhcC-CCeEEEEEEee
Confidence            66 78999999999999984   5689999999999 99998875543

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.67  E-value=1.8e-16  Score=129.24  Aligned_cols=108  Identities=16%  Similarity=0.200  Sum_probs=84.5

Q ss_pred             HHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhc-
Q 024647           24 FKFITSKTTNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQN-   94 (265)
Q Consensus        24 ~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~-   94 (265)
                      +++......+..+|||||||+|.++..+++.++  +|+|||+|+.|++.|++      ..|+.+..       +|+.++ 
T Consensus        25 ~d~~~~f~~~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~-------~Da~~~l   97 (218)
T 3dxy_A           25 LDFPALFGREAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMC-------HDAVEVL   97 (218)
T ss_dssp             CCHHHHHSSCCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEEC-------SCHHHHH
T ss_pred             CCHHHHcCCCCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEE-------CCHHHHH
Confidence            333333344668899999999999999999875  59999999999998764      35788887       444442 


Q ss_pred             c--CCCCceeEEEeccccccCCh---------hHHHHHHHHHhcCCCcEEEEEecC
Q 024647           95 V--AAQSTVDLVTIAQAMHWFDL---------PQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        95 ~--~~~~~~Dlv~~~~~~~~~~~---------~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +  ++++++|.|++++...|...         ..+++++.++|| |||.|++.+..
T Consensus        98 ~~~~~~~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~Lk-pGG~l~i~td~  152 (218)
T 3dxy_A           98 HKMIPDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQ-LGGVFHMATDW  152 (218)
T ss_dssp             HHHSCTTCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEE-EEEEEEEEESC
T ss_pred             HHHcCCCChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcC-CCcEEEEEeCC
Confidence            2  57889999999987777632         149999999999 99999987654

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.67  E-value=4.1e-17  Score=134.53  Aligned_cols=111  Identities=13%  Similarity=0.077  Sum_probs=85.0

Q ss_pred             cHHHHHHHHhhC-CCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC-----CCceEEecCCccchhhhh
Q 024647           20 PEELFKFITSKT-TNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL-----PNIRYELTSPAMSIAELE   92 (265)
Q Consensus        20 ~~~l~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~d~~   92 (265)
                      ...+++.+.... .++.+|||||||+|.++..+++... +|+|+|+|+.|++.|++.     .++.+..       +|++
T Consensus        46 ~~~~~~~l~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~-------~d~~  118 (236)
T 1zx0_A           46 ETPYMHALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLK-------GLWE  118 (236)
T ss_dssp             GHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEE-------SCHH
T ss_pred             HHHHHHHHHhhcCCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEe-------cCHH
Confidence            345555555443 4667999999999999999988655 899999999999998752     3466666       6667


Q ss_pred             hc--cCCCCceeEEEe-ccccc--cC---ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647           93 QN--VAAQSTVDLVTI-AQAMH--WF---DLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        93 ~~--~~~~~~~Dlv~~-~~~~~--~~---~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      ++  ++++++||+|++ .+.++  ..   +...+++++.++|| |||.|++..+
T Consensus       119 ~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~Lk-pgG~l~~~~~  171 (236)
T 1zx0_A          119 DVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLK-PGGVLTYCNL  171 (236)
T ss_dssp             HHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEE-EEEEEEECCH
T ss_pred             HhhcccCCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcC-CCeEEEEEec
Confidence            76  778899999999 55432  22   23467999999999 9999998654

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.67  E-value=4e-16  Score=127.76  Aligned_cols=102  Identities=17%  Similarity=0.142  Sum_probs=85.6

Q ss_pred             cHHHHHHHHh-hCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc-CCCceEEecCCccchhhh-hhccC
Q 024647           20 PEELFKFITS-KTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK-LPNIRYELTSPAMSIAEL-EQNVA   96 (265)
Q Consensus        20 ~~~l~~~l~~-~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~-~~~~~   96 (265)
                      ...+++.+.. ..+++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.+++ .+++.+..       +|+ +.+++
T Consensus        34 ~~~l~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-------~d~~~~~~~  106 (226)
T 3m33_A           34 PELTFDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARANAPHADVYE-------WNGKGELPA  106 (226)
T ss_dssp             TTHHHHHHHHHHCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHCTTSEEEE-------CCSCSSCCT
T ss_pred             HHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhCCCceEEE-------cchhhccCC
Confidence            3455555544 45677899999999999999999998899999999999999876 46788888       455 45666


Q ss_pred             C-CCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEE
Q 024647           97 A-QSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIA  134 (265)
Q Consensus        97 ~-~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~  134 (265)
                      + +++||+|+++     .++..+++++.++|| |||.++
T Consensus       107 ~~~~~fD~v~~~-----~~~~~~l~~~~~~Lk-pgG~l~  139 (226)
T 3m33_A          107 GLGAPFGLIVSR-----RGPTSVILRLPELAA-PDAHFL  139 (226)
T ss_dssp             TCCCCEEEEEEE-----SCCSGGGGGHHHHEE-EEEEEE
T ss_pred             cCCCCEEEEEeC-----CCHHHHHHHHHHHcC-CCcEEE
Confidence            6 7899999987     578899999999999 999998

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.67  E-value=4.1e-17  Score=138.90  Aligned_cols=102  Identities=16%  Similarity=0.283  Sum_probs=80.2

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC------------------------------------
Q 024647           33 NHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL------------------------------------   74 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~------------------------------------   74 (265)
                      ++.+|||||||+|.++..+++.+  .+|+|+|+|+.|++.|++.                                    
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC  125 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence            56899999999999999999984  5899999999999999863                                    


Q ss_pred             ----------------------------CCceEEecCCccchhhhhhccCCCCceeEEEeccccccC-------ChhHHH
Q 024647           75 ----------------------------PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-------DLPQFY  119 (265)
Q Consensus        75 ----------------------------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-------~~~~~l  119 (265)
                                                  .++.+...+......  +..+...++||+|+|..+++|+       +...++
T Consensus       126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~--~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l  203 (292)
T 3g07_A          126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRD--DLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMF  203 (292)
T ss_dssp             ----------------CCSSTTCCSSTTTTEEEEECCCCCSSH--HHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhccCccccccccccccccccccccceEEecccccCcc--ccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHH
Confidence                                        256666644311100  1112467899999999999887       567899


Q ss_pred             HHHHHHhcCCCcEEEEEe
Q 024647          120 NQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       120 ~~~~~~Lk~pgG~l~~~~  137 (265)
                      +++.++|+ |||.|++..
T Consensus       204 ~~~~~~Lk-pGG~lil~~  220 (292)
T 3g07_A          204 RRIYRHLR-PGGILVLEP  220 (292)
T ss_dssp             HHHHHHEE-EEEEEEEEC
T ss_pred             HHHHHHhC-CCcEEEEec
Confidence            99999999 999999853

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.66  E-value=2.4e-16  Score=130.35  Aligned_cols=110  Identities=19%  Similarity=0.170  Sum_probs=87.1

Q ss_pred             HHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC---CCceEEecCCccchhhhhhccCC--
Q 024647           23 LFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL---PNIRYELTSPAMSIAELEQNVAA--   97 (265)
Q Consensus        23 l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---~~~~~~~~~~~~~~~d~~~~~~~--   97 (265)
                      .+..+.....++.+|||+|||+|..+..+++.+.+|+|+|+|+.|++.+++.   .++.+.+.++       .+++..  
T Consensus        46 ~~~~~~~~~~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~-------~~~~~~~~  118 (245)
T 3ggd_A           46 DLPRFELLFNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTAANISYRLLDG-------LVPEQAAQ  118 (245)
T ss_dssp             HHHHHTTTSCTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSCCTTEEEEECCT-------TCHHHHHH
T ss_pred             HHHHHhhccCCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCcccCceEEECcc-------cccccccc
Confidence            3444444456778999999999999999999999999999999999998752   3678887544       332211  


Q ss_pred             ---CCceeEEEeccccccCC---hhHHHHHHHHHhcCCCcEEEEEecCC
Q 024647           98 ---QSTVDLVTIAQAMHWFD---LPQFYNQVKWVLKKPNGVIATWCYTV  140 (265)
Q Consensus        98 ---~~~~Dlv~~~~~~~~~~---~~~~l~~~~~~Lk~pgG~l~~~~~~~  140 (265)
                         ..+||+|++..++|+++   ...+++++.++|| |||.+++..+..
T Consensus       119 ~~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~  166 (245)
T 3ggd_A          119 IHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLG-KQGAMYLIELGT  166 (245)
T ss_dssp             HHHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHT-TTCEEEEEEECT
T ss_pred             cccccCccEEEEcchhhcCCHHHHHHHHHHHHHHcC-CCCEEEEEeCCc
Confidence               12499999999999985   4589999999999 999988877653

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.66  E-value=2.6e-16  Score=126.85  Aligned_cols=109  Identities=17%  Similarity=0.229  Sum_probs=86.8

Q ss_pred             HHHHHHhhCCCCCeEEEEcCCcchhHH-HHHhcCCcEEEEcCCHHHHHHHHcC-----CCceEEecCCccchhhhhhccC
Q 024647           23 LFKFITSKTTNHELAWDVGTGSGQAAA-SLSGIFENVIGTETSPKQIEFATKL-----PNIRYELTSPAMSIAELEQNVA   96 (265)
Q Consensus        23 l~~~l~~~~~~~~~vlDvGcG~G~~~~-~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~d~~~~~~   96 (265)
                      +++.+. ..+++.+|||+|||+|..+. .+++.+.+|+|+|+|+.|++.+++.     .++.+..       +|+.++++
T Consensus        14 ~~~~~~-~~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-------~d~~~~~~   85 (209)
T 2p8j_A           14 FLKYCN-ESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISK-------GDIRKLPF   85 (209)
T ss_dssp             HHHHHH-HSSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEE-------CCTTSCCS
T ss_pred             HHHHHh-ccCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEE-------CchhhCCC
Confidence            343333 34567899999999999854 5556677999999999999988752     4677777       56677777


Q ss_pred             CCCceeEEEeccccccC---ChhHHHHHHHHHhcCCCcEEEEEecCC
Q 024647           97 AQSTVDLVTIAQAMHWF---DLPQFYNQVKWVLKKPNGVIATWCYTV  140 (265)
Q Consensus        97 ~~~~~Dlv~~~~~~~~~---~~~~~l~~~~~~Lk~pgG~l~~~~~~~  140 (265)
                      ++++||+|++..++|++   ++..+++++.++|+ |||.+++..+..
T Consensus        86 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~  131 (209)
T 2p8j_A           86 KDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLK-PGGLACINFLTT  131 (209)
T ss_dssp             CTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEEET
T ss_pred             CCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcC-CCcEEEEEEecc
Confidence            78899999999988887   45689999999999 999999876653

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.66  E-value=6.7e-16  Score=122.84  Aligned_cols=116  Identities=16%  Similarity=0.095  Sum_probs=88.5

Q ss_pred             hCCCCcHHHHHHHHhhC-----CCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC------CCceEEec
Q 024647           15 TRPNYPEELFKFITSKT-----TNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL------PNIRYELT   82 (265)
Q Consensus        15 ~rp~y~~~l~~~l~~~~-----~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~------~~~~~~~~   82 (265)
                      .||. ++.+.+.+....     .++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.+++.      .++.+.+ 
T Consensus        22 ~rp~-~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~-   99 (189)
T 3p9n_A           22 TRPT-TDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRR-   99 (189)
T ss_dssp             C----CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEE-
T ss_pred             CccC-cHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEE-
Confidence            4665 455555544332     4668999999999999998887765 699999999999998752      4677887 


Q ss_pred             CCccchhhhhhcc--CCCCceeEEEeccccccC--ChhHHHHHHHH--HhcCCCcEEEEEecC
Q 024647           83 SPAMSIAELEQNV--AAQSTVDLVTIAQAMHWF--DLPQFYNQVKW--VLKKPNGVIATWCYT  139 (265)
Q Consensus        83 ~~~~~~~d~~~~~--~~~~~~Dlv~~~~~~~~~--~~~~~l~~~~~--~Lk~pgG~l~~~~~~  139 (265)
                            +|+.++.  .++++||+|+++..+|+.  +...++.++.+  +|+ |||.+++....
T Consensus       100 ------~d~~~~~~~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~-pgG~l~~~~~~  155 (189)
T 3p9n_A          100 ------GAVAAVVAAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTR-EGTVAVVERAT  155 (189)
T ss_dssp             ------SCHHHHHHHCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCC-TTCEEEEEEET
T ss_pred             ------ccHHHHHhhccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccC-CCeEEEEEecC
Confidence                  5555442  346799999999988874  67789999999  999 99999987664

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.66  E-value=2.9e-15  Score=118.94  Aligned_cols=107  Identities=21%  Similarity=0.338  Sum_probs=88.9

Q ss_pred             HHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc-CCCceEEecCCccchhhhhhccCCCCceeEE
Q 024647           26 FITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK-LPNIRYELTSPAMSIAELEQNVAAQSTVDLV  104 (265)
Q Consensus        26 ~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv  104 (265)
                      .+....+++.+|||+|||+|.++..+++.+.+++++|+|+.+++.+++ .+++.+..       +|+..+++++++||+|
T Consensus        39 ~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~-------~d~~~~~~~~~~~D~i  111 (195)
T 3cgg_A           39 LIDAMAPRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFPEARWVV-------GDLSVDQISETDFDLI  111 (195)
T ss_dssp             HHHHHSCTTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTSEEEE-------CCTTTSCCCCCCEEEE
T ss_pred             HHHHhccCCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhCCCCcEEE-------cccccCCCCCCceeEE
Confidence            444445677899999999999999999998899999999999999886 45778877       5566666677899999


Q ss_pred             Eec-cccccCC---hhHHHHHHHHHhcCCCcEEEEEecCC
Q 024647          105 TIA-QAMHWFD---LPQFYNQVKWVLKKPNGVIATWCYTV  140 (265)
Q Consensus       105 ~~~-~~~~~~~---~~~~l~~~~~~Lk~pgG~l~~~~~~~  140 (265)
                      +++ ..+|+++   ...+++++.++|+ |||.+++.....
T Consensus       112 ~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~G~l~~~~~~~  150 (195)
T 3cgg_A          112 VSAGNVMGFLAEDGREPALANIHRALG-ADGRAVIGFGAG  150 (195)
T ss_dssp             EECCCCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEETT
T ss_pred             EECCcHHhhcChHHHHHHHHHHHHHhC-CCCEEEEEeCCC
Confidence            998 6788773   3679999999999 999999866543

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.65  E-value=1.9e-16  Score=127.15  Aligned_cols=110  Identities=17%  Similarity=0.147  Sum_probs=87.9

Q ss_pred             HHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC-----CCceEEecCCccchhhhhhccC
Q 024647           22 ELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL-----PNIRYELTSPAMSIAELEQNVA   96 (265)
Q Consensus        22 ~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~d~~~~~~   96 (265)
                      ..+..+....+++ +|||+|||+|.++..+++.+.+|+|+|+|+.|++.+++.     .++.+..       +|+..+++
T Consensus        19 ~~l~~~~~~~~~~-~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-------~d~~~~~~   90 (202)
T 2kw5_A           19 DFLVSVANQIPQG-KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQ-------SNLADFDI   90 (202)
T ss_dssp             SSHHHHHHHSCSS-EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHTCCEEEEC-------CBTTTBSC
T ss_pred             HHHHHHHHhCCCC-CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEE-------cChhhcCC
Confidence            3444444455666 999999999999999999988999999999999988753     2566666       66677777


Q ss_pred             CCCceeEEEeccccccC--ChhHHHHHHHHHhcCCCcEEEEEecCCC
Q 024647           97 AQSTVDLVTIAQAMHWF--DLPQFYNQVKWVLKKPNGVIATWCYTVP  141 (265)
Q Consensus        97 ~~~~~Dlv~~~~~~~~~--~~~~~l~~~~~~Lk~pgG~l~~~~~~~~  141 (265)
                      ++++||+|++.. .|+.  +...+++++.++|+ |||.+++..+...
T Consensus        91 ~~~~fD~v~~~~-~~~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~  135 (202)
T 2kw5_A           91 VADAWEGIVSIF-CHLPSSLRQQLYPKVYQGLK-PGGVFILEGFAPE  135 (202)
T ss_dssp             CTTTCSEEEEEC-CCCCHHHHHHHHHHHHTTCC-SSEEEEEEEECTT
T ss_pred             CcCCccEEEEEh-hcCCHHHHHHHHHHHHHhcC-CCcEEEEEEeccc
Confidence            778999999964 3443  56789999999999 9999999777543

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.65  E-value=1.1e-15  Score=129.31  Aligned_cols=106  Identities=25%  Similarity=0.252  Sum_probs=85.9

Q ss_pred             HHHHHHhhC--CCCCeEEEEcCCcchhHHHHHh-cCCcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhh
Q 024647           23 LFKFITSKT--TNHELAWDVGTGSGQAAASLSG-IFENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELE   92 (265)
Q Consensus        23 l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~   92 (265)
                      .++.+....  +++.+|||||||+|.++..+++ .+.+|+|+|+|+.+++.+++.       .++.+..       +|+.
T Consensus        52 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~-------~d~~  124 (287)
T 1kpg_A           52 KIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLL-------AGWE  124 (287)
T ss_dssp             HHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEE-------SCGG
T ss_pred             HHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEE-------CChh
Confidence            344444443  4667999999999999999984 566999999999999988752       3677777       5666


Q ss_pred             hccCCCCceeEEEeccccccC---ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           93 QNVAAQSTVDLVTIAQAMHWF---DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        93 ~~~~~~~~~Dlv~~~~~~~~~---~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +++   ++||+|++..++|++   ++..+++++.++|| |||.+++..+.
T Consensus       125 ~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~  170 (287)
T 1kpg_A          125 QFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLP-ADGVMLLHTIT  170 (287)
T ss_dssp             GCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSC-TTCEEEEEEEE
T ss_pred             hCC---CCeeEEEEeCchhhcChHHHHHHHHHHHHhcC-CCCEEEEEEec
Confidence            554   789999999999888   46789999999999 99999986664

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.65  E-value=4.8e-16  Score=126.04  Aligned_cols=111  Identities=14%  Similarity=0.183  Sum_probs=85.3

Q ss_pred             HHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCce
Q 024647           22 ELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTV  101 (265)
Q Consensus        22 ~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  101 (265)
                      .+++.+... .++.+|||+|||+|.++..++   .+|+|+|+|+.         ++.+..       +|+.++++++++|
T Consensus        57 ~~~~~l~~~-~~~~~vLDiG~G~G~~~~~l~---~~v~~~D~s~~---------~~~~~~-------~d~~~~~~~~~~f  116 (215)
T 2zfu_A           57 RIARDLRQR-PASLVVADFGCGDCRLASSIR---NPVHCFDLASL---------DPRVTV-------CDMAQVPLEDESV  116 (215)
T ss_dssp             HHHHHHHTS-CTTSCEEEETCTTCHHHHHCC---SCEEEEESSCS---------STTEEE-------SCTTSCSCCTTCE
T ss_pred             HHHHHHhcc-CCCCeEEEECCcCCHHHHHhh---ccEEEEeCCCC---------CceEEE-------eccccCCCCCCCE
Confidence            345544432 566789999999999998883   68999999988         466666       5666777778899


Q ss_pred             eEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecCCCC-CChHHHHhhcc
Q 024647          102 DLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTVPE-VNVSVDAVFQP  153 (265)
Q Consensus       102 Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~-~~~~~~~~~~~  153 (265)
                      |+|++..++|+.++..+++++.++|+ |||.+++..+.... ....+.+++++
T Consensus       117 D~v~~~~~l~~~~~~~~l~~~~~~L~-~gG~l~i~~~~~~~~~~~~~~~~l~~  168 (215)
T 2zfu_A          117 DVAVFCLSLMGTNIRDFLEEANRVLK-PGGLLKVAEVSSRFEDVRTFLRAVTK  168 (215)
T ss_dssp             EEEEEESCCCSSCHHHHHHHHHHHEE-EEEEEEEEECGGGCSCHHHHHHHHHH
T ss_pred             eEEEEehhccccCHHHHHHHHHHhCC-CCeEEEEEEcCCCCCCHHHHHHHHHH
Confidence            99999999998789999999999999 99999987654321 12444444443

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.65  E-value=4.4e-16  Score=133.09  Aligned_cols=103  Identities=12%  Similarity=0.123  Sum_probs=77.8

Q ss_pred             CCCeEEEEcCCcchhHHHHHhc-CCcEEEEcCCHHHHHHHHcC---CC---------ceEEecCCccchhhh--hhc--c
Q 024647           33 NHELAWDVGTGSGQAAASLSGI-FENVIGTETSPKQIEFATKL---PN---------IRYELTSPAMSIAEL--EQN--V   95 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~---~~---------~~~~~~~~~~~~~d~--~~~--~   95 (265)
                      ++.+|||||||+|..+..++.. +.+|+|+|+|+.|++.|+++   .+         +.+.+..+.   +|.  +++  +
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~---~d~~~~~l~~~  124 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIR---SDTFVSSVREV  124 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTT---SSSHHHHHHTT
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcc---cchhhhhhhcc
Confidence            4678999999999877666554 46899999999999999853   11         345553321   222  322  2


Q ss_pred             CCCCceeEEEeccccccC-C---hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           96 AAQSTVDLVTIAQAMHWF-D---LPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        96 ~~~~~~Dlv~~~~~~~~~-~---~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      .++++||+|+|.+++||+ +   ...+++++.++|| |||.|++.++.
T Consensus       125 ~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~Lk-pGG~~i~~~~~  171 (302)
T 2vdw_A          125 FYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTA-SGGKVLITTMD  171 (302)
T ss_dssp             CCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEE-EEEEEEEEEEC
T ss_pred             ccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcC-CCCEEEEEeCC
Confidence            456799999999999985 3   4689999999999 99999987764

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.64  E-value=2.9e-16  Score=129.62  Aligned_cols=109  Identities=13%  Similarity=0.080  Sum_probs=82.5

Q ss_pred             HHHHHHHHhh-CCCCCeEEEEcCCcchhHHHHHhcC-CcEEEEcCCHHHHHHHHcC-----CCceEEecCCccchhhhhh
Q 024647           21 EELFKFITSK-TTNHELAWDVGTGSGQAAASLSGIF-ENVIGTETSPKQIEFATKL-----PNIRYELTSPAMSIAELEQ   93 (265)
Q Consensus        21 ~~l~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~d~~~   93 (265)
                      ..+++.+... ..++.+|||||||+|..+..++++. .+|++||+|+.|++.|++.     .++.+...       |++.
T Consensus        47 ~~~m~~~a~~~~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~-------~a~~  119 (236)
T 3orh_A           47 TPYMHALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKG-------LWED  119 (236)
T ss_dssp             HHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEES-------CHHH
T ss_pred             HHHHHHHHHhhccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEee-------hHHh
Confidence            3445555444 3567899999999999999999876 4799999999999999752     34566663       3333


Q ss_pred             c--cCCCCceeEEEec-----cccccC-ChhHHHHHHHHHhcCCCcEEEEEe
Q 024647           94 N--VAAQSTVDLVTIA-----QAMHWF-DLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        94 ~--~~~~~~~Dlv~~~-----~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      +  ++++++||.|+..     ...++. ++..+++++.|+|| |||+|++.+
T Consensus       120 ~~~~~~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLk-PGG~l~f~~  170 (236)
T 3orh_A          120 VAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLK-PGGVLTYCN  170 (236)
T ss_dssp             HGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEE-EEEEEEECC
T ss_pred             hcccccccCCceEEEeeeecccchhhhcchhhhhhhhhheeC-CCCEEEEEe
Confidence            2  4678899999753     333444 78899999999999 999998754

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.64  E-value=3.9e-16  Score=139.16  Aligned_cols=113  Identities=14%  Similarity=0.127  Sum_probs=91.5

Q ss_pred             HHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCc
Q 024647           23 LFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQST  100 (265)
Q Consensus        23 l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  100 (265)
                      +.+.+....  +++.+|||||||+|.++..+++++.+|+|+|+|+.|++.|++. ++.....  .+..++.+.+++++++
T Consensus        95 ~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~-~~~~~~~--~~~~~~~~~l~~~~~~  171 (416)
T 4e2x_A           95 LARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREK-GIRVRTD--FFEKATADDVRRTEGP  171 (416)
T ss_dssp             HHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTT-TCCEECS--CCSHHHHHHHHHHHCC
T ss_pred             HHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHc-CCCccee--eechhhHhhcccCCCC
Confidence            344444443  3567999999999999999999999999999999999999874 3443332  1223566677777789


Q ss_pred             eeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          101 VDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       101 ~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      ||+|++..++|++ |+..+++++.++|| |||.+++..+.
T Consensus       172 fD~I~~~~vl~h~~d~~~~l~~~~r~Lk-pgG~l~i~~~~  210 (416)
T 4e2x_A          172 ANVIYAANTLCHIPYVQSVLEGVDALLA-PDGVFVFEDPY  210 (416)
T ss_dssp             EEEEEEESCGGGCTTHHHHHHHHHHHEE-EEEEEEEEEEC
T ss_pred             EEEEEECChHHhcCCHHHHHHHHHHHcC-CCeEEEEEeCC
Confidence            9999999999999 99999999999999 99999986654

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.64  E-value=1.5e-15  Score=130.59  Aligned_cols=108  Identities=18%  Similarity=0.174  Sum_probs=87.8

Q ss_pred             HHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhc-CCcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhh
Q 024647           23 LFKFITSKT--TNHELAWDVGTGSGQAAASLSGI-FENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELE   92 (265)
Q Consensus        23 l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~   92 (265)
                      .++.+....  .++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.+++.       .++.+..       +|+.
T Consensus        78 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~-------~d~~  150 (318)
T 2fk8_A           78 KVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLL-------QGWE  150 (318)
T ss_dssp             HHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEE-------SCGG
T ss_pred             HHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEE-------CChH
Confidence            344555543  46689999999999999999987 77999999999999998752       3477777       5555


Q ss_pred             hccCCCCceeEEEeccccccC---ChhHHHHHHHHHhcCCCcEEEEEecCCC
Q 024647           93 QNVAAQSTVDLVTIAQAMHWF---DLPQFYNQVKWVLKKPNGVIATWCYTVP  141 (265)
Q Consensus        93 ~~~~~~~~~Dlv~~~~~~~~~---~~~~~l~~~~~~Lk~pgG~l~~~~~~~~  141 (265)
                      +++   ++||+|++..++|++   ++..+++++.++|+ |||.+++..+...
T Consensus       151 ~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~  198 (318)
T 2fk8_A          151 DFA---EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMP-ADGRMTVQSSVSY  198 (318)
T ss_dssp             GCC---CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSC-TTCEEEEEEEECC
T ss_pred             HCC---CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcC-CCcEEEEEEeccC
Confidence            553   789999999999998   45789999999999 9999998776543

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.64  E-value=7.8e-16  Score=127.75  Aligned_cols=129  Identities=21%  Similarity=0.288  Sum_probs=94.7

Q ss_pred             ChhHHHHHHHHHhhhCCCC---cHHHHHHH---HhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHH
Q 024647            1 MAELFIKQAKQYAETRPNY---PEELFKFI---TSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFAT   72 (265)
Q Consensus         1 ~~~~f~~~a~~Y~~~rp~y---~~~l~~~l---~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~   72 (265)
                      |...|+..|..|+..-+..   ....++++   ....  +++.+|||+|||+|..+..+++.+.+|+|+|+|+.|++.++
T Consensus         1 m~~~y~~~a~~yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~   80 (252)
T 1wzn_A            1 MYELYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVAR   80 (252)
T ss_dssp             CCGGGTTTGGGHHHHTHHHHHTHHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHH
Confidence            5567888888888743211   11222222   2222  35679999999999999999999889999999999999887


Q ss_pred             cC-----CCceEEecCCccchhhhhhccCCCCceeEEEecc-ccccCC---hhHHHHHHHHHhcCCCcEEEEEec
Q 024647           73 KL-----PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ-AMHWFD---LPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        73 ~~-----~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~-~~~~~~---~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      +.     .++.+.+       +|+.+++.+ ++||+|++.. .+++++   ...+++++.++|+ |||.+++..+
T Consensus        81 ~~~~~~~~~v~~~~-------~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~-pgG~li~~~~  146 (252)
T 1wzn_A           81 RKAKERNLKIEFLQ-------GDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALK-PGGVFITDFP  146 (252)
T ss_dssp             HHHHHTTCCCEEEE-------SCGGGCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred             HHHHhcCCceEEEE-------CChhhcccC-CCccEEEEcCCchhcCCHHHHHHHHHHHHHHcC-CCeEEEEecc
Confidence            52     3567777       666666544 6899999874 455553   4579999999999 9999987543

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.64  E-value=1.2e-15  Score=129.26  Aligned_cols=108  Identities=16%  Similarity=0.170  Sum_probs=88.8

Q ss_pred             cHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC-----CCceEEecCCccchhhhhhc
Q 024647           20 PEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL-----PNIRYELTSPAMSIAELEQN   94 (265)
Q Consensus        20 ~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~d~~~~   94 (265)
                      ...+++.+...  ++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.+++.     .++.+..       +|+.+.
T Consensus       109 ~~~~~~~~~~~--~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-------~d~~~~  179 (286)
T 3m70_A          109 HGDVVDAAKII--SPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENLNISTAL-------YDINAA  179 (286)
T ss_dssp             CHHHHHHHHHS--CSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEE-------CCGGGC
T ss_pred             HHHHHHHhhcc--CCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEE-------eccccc
Confidence            45666665432  668899999999999999999988999999999999988752     1677777       666776


Q ss_pred             cCCCCceeEEEeccccccCCh---hHHHHHHHHHhcCCCcEEEEEec
Q 024647           95 VAAQSTVDLVTIAQAMHWFDL---PQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        95 ~~~~~~~Dlv~~~~~~~~~~~---~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      +. +++||+|+++.++|+++.   ..+++++.++|+ |||.+++...
T Consensus       180 ~~-~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~  224 (286)
T 3m70_A          180 NI-QENYDFIVSTVVFMFLNRERVPSIIKNMKEHTN-VGGYNLIVAA  224 (286)
T ss_dssp             CC-CSCEEEEEECSSGGGSCGGGHHHHHHHHHHTEE-EEEEEEEEEE
T ss_pred             cc-cCCccEEEEccchhhCCHHHHHHHHHHHHHhcC-CCcEEEEEEe
Confidence            55 789999999999999843   379999999999 9999877554

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.63  E-value=1e-15  Score=128.73  Aligned_cols=104  Identities=14%  Similarity=0.201  Sum_probs=80.9

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHH------HHHHHHcC-------CCceEEecCCccchhhhhhcc
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPK------QIEFATKL-------PNIRYELTSPAMSIAELEQNV   95 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~------~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~   95 (265)
                      +++.+|||||||+|.++..+++++   .+|+|+|+|+.      |++.+++.       +++.+...+ .+   ....++
T Consensus        42 ~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d-~~---~~~~~~  117 (275)
T 3bkx_A           42 KPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNT-NL---SDDLGP  117 (275)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSC-CT---TTCCGG
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECC-hh---hhccCC
Confidence            567899999999999999999885   68999999997      88887652       357777643 00   023455


Q ss_pred             CCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecCC
Q 024647           96 AAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTV  140 (265)
Q Consensus        96 ~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~  140 (265)
                      +++++||+|++..++|++ ++..+++.+.++++ |||.+++..+..
T Consensus       118 ~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~-~gG~l~~~~~~~  162 (275)
T 3bkx_A          118 IADQHFDRVVLAHSLWYFASANALALLFKNMAA-VCDHVDVAEWSM  162 (275)
T ss_dssp             GTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTT-TCSEEEEEEECS
T ss_pred             CCCCCEEEEEEccchhhCCCHHHHHHHHHHHhC-CCCEEEEEEecC
Confidence            677899999999999999 77776666666666 799999876653

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.63  E-value=2.9e-16  Score=133.28  Aligned_cols=105  Identities=12%  Similarity=0.105  Sum_probs=74.4

Q ss_pred             CCCCeEEEEcCCcchhHHHHHh-cCCcEEEEcCCHHHHHHHHcC-C-------------CceEEecC-------------
Q 024647           32 TNHELAWDVGTGSGQAAASLSG-IFENVIGTETSPKQIEFATKL-P-------------NIRYELTS-------------   83 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~-~-------------~~~~~~~~-------------   83 (265)
                      .++.+|||||||+|.++..++. .+.+|+|+|+|+.|++.|++. .             ++.+..+.             
T Consensus        70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  149 (289)
T 2g72_A           70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  149 (289)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence            3568999999999996554444 356899999999999988751 0             01111100             


Q ss_pred             --Cccchhhhhh-cc-----CCCCceeEEEecccccc----C-ChhHHHHHHHHHhcCCCcEEEEEe
Q 024647           84 --PAMSIAELEQ-NV-----AAQSTVDLVTIAQAMHW----F-DLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        84 --~~~~~~d~~~-~~-----~~~~~~Dlv~~~~~~~~----~-~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                        ..+...|+.. ++     +++++||+|+++.++||    + ++..+++++.++|| |||.|++..
T Consensus       150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~Lk-pGG~l~~~~  215 (289)
T 2g72_A          150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLR-PGGHLLLIG  215 (289)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEE-EEEEEEEEE
T ss_pred             hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcC-CCCEEEEEE
Confidence              0011135554 33     33467999999999999    5 67899999999999 999999864

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.63  E-value=1.5e-15  Score=123.33  Aligned_cols=100  Identities=20%  Similarity=0.209  Sum_probs=81.1

Q ss_pred             CCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhcc--CCCCc
Q 024647           31 TTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQNV--AAQST  100 (265)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~~--~~~~~  100 (265)
                      .+++.+|||||||+|.++..+++..  .+|+|+|+|+.|++.|++      .+|+.+..++       +..++  +++++
T Consensus        36 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d-------~~~l~~~~~~~~  108 (213)
T 2fca_A           36 GNDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNID-------ADTLTDVFEPGE  108 (213)
T ss_dssp             TSCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCC-------GGGHHHHCCTTS
T ss_pred             CCCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCC-------HHHHHhhcCcCC
Confidence            3456789999999999999999885  479999999999998875      3578888744       44443  56789


Q ss_pred             eeEEEeccccccCC---------hhHHHHHHHHHhcCCCcEEEEEec
Q 024647          101 VDLVTIAQAMHWFD---------LPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       101 ~Dlv~~~~~~~~~~---------~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      ||.|++++..+|..         ...+++++.++|+ |||.|++.+.
T Consensus       109 ~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~Lk-pgG~l~~~td  154 (213)
T 2fca_A          109 VKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMG-KGGSIHFKTD  154 (213)
T ss_dssp             CCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHT-TSCEEEEEES
T ss_pred             cCEEEEECCCCCcCccccccccCcHHHHHHHHHHcC-CCCEEEEEeC
Confidence            99999887776662         3579999999999 9999998664

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.63  E-value=1.7e-15  Score=133.28  Aligned_cols=124  Identities=15%  Similarity=0.217  Sum_probs=95.0

Q ss_pred             HHHHHHHHhhC----CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC-----CCceEEecCCccchhhh
Q 024647           21 EELFKFITSKT----TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL-----PNIRYELTSPAMSIAEL   91 (265)
Q Consensus        21 ~~l~~~l~~~~----~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~d~   91 (265)
                      ..+++.+....    .++.+|||+|||+|.++..+++.+.+|+++|+|+.+++.+++.     .++.+..       +|+
T Consensus       217 ~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~-------~D~  289 (381)
T 3dmg_A          217 LLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANALKAQALH-------SDV  289 (381)
T ss_dssp             HHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHHTTCCCEEEE-------CST
T ss_pred             HHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEE-------cch
Confidence            34555554433    3567999999999999999999989999999999999998752     2466666       566


Q ss_pred             hhccCCCCceeEEEecccccc-----C-ChhHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHhhc
Q 024647           92 EQNVAAQSTVDLVTIAQAMHW-----F-DLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQ  152 (265)
Q Consensus        92 ~~~~~~~~~~Dlv~~~~~~~~-----~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~~  152 (265)
                      .+...++++||+|+++..+|+     . +...+++++.++|+ |||.+++...........+.+.|.
T Consensus       290 ~~~~~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~Lk-pGG~l~iv~n~~l~~~~~l~~~f~  355 (381)
T 3dmg_A          290 DEALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLR-PGGVFFLVSNPFLKYEPLLEEKFG  355 (381)
T ss_dssp             TTTSCTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEE-EEEEEEEEECTTSCHHHHHHHHHS
T ss_pred             hhccccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcC-cCcEEEEEEcCCCChHHHHHHhhc
Confidence            666555689999999999998     3 45689999999999 999999877654433344444443

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.62  E-value=4.1e-15  Score=119.65  Aligned_cols=111  Identities=23%  Similarity=0.288  Sum_probs=88.7

Q ss_pred             CcHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC------CCceEEecCCccch
Q 024647           19 YPEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL------PNIRYELTSPAMSI   88 (265)
Q Consensus        19 y~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~   88 (265)
                      .++++...+....  .++.+|||+|||+|.++..+++.+  .+|+++|+|+.+++.+++.      .++.+..       
T Consensus        24 ~~~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~-------   96 (204)
T 3e05_A           24 TKQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVE-------   96 (204)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEE-------
T ss_pred             ChHHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEe-------
Confidence            4566656665554  466899999999999999999988  6799999999999998752      5677777       


Q ss_pred             hhhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           89 AELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        89 ~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +|+.+.....++||+|++...++  +...+++++.++|+ |||.+++....
T Consensus        97 ~d~~~~~~~~~~~D~i~~~~~~~--~~~~~l~~~~~~Lk-pgG~l~~~~~~  144 (204)
T 3e05_A           97 AFAPEGLDDLPDPDRVFIGGSGG--MLEEIIDAVDRRLK-SEGVIVLNAVT  144 (204)
T ss_dssp             CCTTTTCTTSCCCSEEEESCCTT--CHHHHHHHHHHHCC-TTCEEEEEECB
T ss_pred             CChhhhhhcCCCCCEEEECCCCc--CHHHHHHHHHHhcC-CCeEEEEEecc
Confidence            44433333346899999998776  78899999999999 99999987654

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.62  E-value=1.2e-15  Score=142.69  Aligned_cols=115  Identities=18%  Similarity=0.257  Sum_probs=93.4

Q ss_pred             CCCCcHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHc------------CCCce
Q 024647           16 RPNYPEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATK------------LPNIR   78 (265)
Q Consensus        16 rp~y~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~------------~~~~~   78 (265)
                      .|.+....++++....  .++.+|||||||+|.++..+++.+   .+|+|+|+|+.|++.|++            ..++.
T Consensus       702 sPPL~eqRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVe  781 (950)
T 3htx_A          702 KPPLSKQRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSAT  781 (950)
T ss_dssp             SSCHHHHHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEE
T ss_pred             CchHHHHHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceE
Confidence            4555555666665554  367899999999999999999988   589999999999999865            24577


Q ss_pred             EEecCCccchhhhhhccCCCCceeEEEeccccccCChh---HHHHHHHHHhcCCCcEEEEEecC
Q 024647           79 YELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLP---QFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        79 ~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~---~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +.+       +|+.+++..+++||+|++..++||++..   .+++++.++|| || .+++.+++
T Consensus       782 fiq-------GDa~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLK-PG-~LIISTPN  836 (950)
T 3htx_A          782 LYD-------GSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFH-PK-LLIVSTPN  836 (950)
T ss_dssp             EEE-------SCTTSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTC-CS-EEEEEECB
T ss_pred             EEE-------CchHhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcC-CC-EEEEEecC
Confidence            777       6777888888999999999999999533   48999999999 99 77776664

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.62  E-value=7.8e-16  Score=132.11  Aligned_cols=111  Identities=13%  Similarity=0.158  Sum_probs=85.4

Q ss_pred             HHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhc-CCcEEEEcCCHHHHHHHHcC-------------CCceEEecCCccc
Q 024647           22 ELFKFITSKTTNHELAWDVGTGSGQAAASLSGI-FENVIGTETSPKQIEFATKL-------------PNIRYELTSPAMS   87 (265)
Q Consensus        22 ~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-------------~~~~~~~~~~~~~   87 (265)
                      .+++.+....+++.+|||+|||+|..+..+++. ..+|+|+|+|+.|++.+++.             .++.+..      
T Consensus        23 ~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~------   96 (313)
T 3bgv_A           23 EFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFIT------   96 (313)
T ss_dssp             HHHHHHHHTC--CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEE------
T ss_pred             HHHHHhhhccCCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEE------
Confidence            344444444456789999999999999999875 45899999999999988752             1566777      


Q ss_pred             hhhhhhcc----C--CCCceeEEEeccccccC--Ch---hHHHHHHHHHhcCCCcEEEEEecCC
Q 024647           88 IAELEQNV----A--AQSTVDLVTIAQAMHWF--DL---PQFYNQVKWVLKKPNGVIATWCYTV  140 (265)
Q Consensus        88 ~~d~~~~~----~--~~~~~Dlv~~~~~~~~~--~~---~~~l~~~~~~Lk~pgG~l~~~~~~~  140 (265)
                       +|++..+    +  ++++||+|+++.++||+  +.   ..+++++.++|+ |||.+++..+..
T Consensus        97 -~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lk-pgG~li~~~~~~  158 (313)
T 3bgv_A           97 -ADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLS-PGGYFIGTTPNS  158 (313)
T ss_dssp             -CCTTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEE-EEEEEEEEEECH
T ss_pred             -ecccccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhC-CCcEEEEecCCh
Confidence             5555553    3  34589999999999997  43   489999999999 999999877653

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.62  E-value=5.3e-15  Score=119.32  Aligned_cols=113  Identities=19%  Similarity=0.182  Sum_probs=87.2

Q ss_pred             hCCCCcHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC------C-CceEEecCCc
Q 024647           15 TRPNYPEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL------P-NIRYELTSPA   85 (265)
Q Consensus        15 ~rp~y~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~-~~~~~~~~~~   85 (265)
                      ..+..++++...+....  .++.+|||+|||+|.++..+++...+|+|+|+|+.|++.|++.      + ++.+..    
T Consensus        35 ~~~~~~~~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~----  110 (204)
T 3njr_A           35 DGQITKSPMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQ----  110 (204)
T ss_dssp             SSCCCCHHHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE----
T ss_pred             CCCCCcHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEe----
Confidence            33444556655555443  4668999999999999999999988999999999999988752      3 678887    


Q ss_pred             cchhhhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           86 MSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        86 ~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                         +|+.+.....++||+|++...+   +.. +++++.++|+ |||.+++....
T Consensus       111 ---~d~~~~~~~~~~~D~v~~~~~~---~~~-~l~~~~~~Lk-pgG~lv~~~~~  156 (204)
T 3njr_A          111 ---GTAPAALADLPLPEAVFIGGGG---SQA-LYDRLWEWLA-PGTRIVANAVT  156 (204)
T ss_dssp             ---SCTTGGGTTSCCCSEEEECSCC---CHH-HHHHHHHHSC-TTCEEEEEECS
T ss_pred             ---CchhhhcccCCCCCEEEECCcc---cHH-HHHHHHHhcC-CCcEEEEEecC
Confidence               4445432234579999987643   666 9999999999 99999987765

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.61  E-value=2.9e-15  Score=122.55  Aligned_cols=120  Identities=18%  Similarity=0.142  Sum_probs=92.8

Q ss_pred             HHhhhCCCCcHHHHHHHHhh-----CCCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHc----CCCce
Q 024647           11 QYAETRPNYPEELFKFITSK-----TTNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATK----LPNIR   78 (265)
Q Consensus        11 ~Y~~~rp~y~~~l~~~l~~~-----~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~----~~~~~   78 (265)
                      -|..+-|. -.++...|...     .+++++|||+|||+|.++..+++..   .+|+|+|+++.|++.+++    .+|+.
T Consensus        51 e~r~w~p~-rsklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~  129 (233)
T 4df3_A           51 EYREWNAY-RSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIF  129 (233)
T ss_dssp             EEEECCTT-TCHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEE
T ss_pred             eeeeECCC-chHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCee
Confidence            35556664 45666666543     2578999999999999999999873   369999999999998764    46888


Q ss_pred             EEecCCccchhhhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647           79 YELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        79 ~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      .+..+.    .+.+..+...+++|+|++....|+ +...++.++.++|| |||.+++..
T Consensus       130 ~V~~d~----~~p~~~~~~~~~vDvVf~d~~~~~-~~~~~l~~~~r~LK-pGG~lvI~i  182 (233)
T 4df3_A          130 PILGDA----RFPEKYRHLVEGVDGLYADVAQPE-QAAIVVRNARFFLR-DGGYMLMAI  182 (233)
T ss_dssp             EEESCT----TCGGGGTTTCCCEEEEEECCCCTT-HHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             EEEEec----cCccccccccceEEEEEEeccCCh-hHHHHHHHHHHhcc-CCCEEEEEE
Confidence            888665    455666667789999987654332 56689999999999 999998754

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.61  E-value=3.8e-15  Score=116.67  Aligned_cols=117  Identities=16%  Similarity=0.125  Sum_probs=88.3

Q ss_pred             HHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCc
Q 024647           21 EELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQST  100 (265)
Q Consensus        21 ~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  100 (265)
                      ..+++.+.....++.+|||+|||+|.++..+++.+ +|+|+|+|+.|++.   ..++.+.+       +|+.+ +.++++
T Consensus        11 ~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~---~~~~~~~~-------~d~~~-~~~~~~   78 (170)
T 3q87_B           11 YTLMDALEREGLEMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALES---HRGGNLVR-------ADLLC-SINQES   78 (170)
T ss_dssp             HHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHT---CSSSCEEE-------CSTTT-TBCGGG
T ss_pred             HHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhc---ccCCeEEE-------CChhh-hcccCC
Confidence            34455544333556799999999999999999999 99999999999998   36788888       55554 345689


Q ss_pred             eeEEEeccccccC-Ch---------hHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHhhc
Q 024647          101 VDLVTIAQAMHWF-DL---------PQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQ  152 (265)
Q Consensus       101 ~Dlv~~~~~~~~~-~~---------~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~~  152 (265)
                      ||+|+++..+|+. +.         ..++.++.+.|  |||.+++....... ...+.++++
T Consensus        79 fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--pgG~l~~~~~~~~~-~~~l~~~l~  137 (170)
T 3q87_B           79 VDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV--TVGMLYLLVIEANR-PKEVLARLE  137 (170)
T ss_dssp             CSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC--CSSEEEEEEEGGGC-HHHHHHHHH
T ss_pred             CCEEEECCCCccCCccccccCCcchHHHHHHHHhhC--CCCEEEEEEecCCC-HHHHHHHHH
Confidence            9999999999986 33         47889999998  69999886654322 244444443

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.61  E-value=3.8e-15  Score=116.03  Aligned_cols=118  Identities=15%  Similarity=0.124  Sum_probs=88.7

Q ss_pred             hCCCCcHHHHHHHHhh----CCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC----C-CceEEecCCc
Q 024647           15 TRPNYPEELFKFITSK----TTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL----P-NIRYELTSPA   85 (265)
Q Consensus        15 ~rp~y~~~l~~~l~~~----~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~-~~~~~~~~~~   85 (265)
                      .||. ++.+.+.+...    .+++.+|||+|||+|..+..+++.+++|+|+|+|+.|++.+++.    . ++.+...   
T Consensus        20 ~~~~-~~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~---   95 (171)
T 1ws6_A           20 ARPS-PVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVAL---   95 (171)
T ss_dssp             CCCC-CHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECS---
T ss_pred             CCCC-HHHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHcCCceEEEec---
Confidence            4665 45555555443    23678999999999999999999988899999999999998752    1 6777774   


Q ss_pred             cchhhhhhc----cCCCCceeEEEeccccccCChhHHHHHHH--HHhcCCCcEEEEEecCCCC
Q 024647           86 MSIAELEQN----VAAQSTVDLVTIAQAMHWFDLPQFYNQVK--WVLKKPNGVIATWCYTVPE  142 (265)
Q Consensus        86 ~~~~d~~~~----~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~--~~Lk~pgG~l~~~~~~~~~  142 (265)
                          |+.+.    +...++||+|+++..+| .+...+++.+.  ++|+ |||.+++.+.....
T Consensus        96 ----d~~~~~~~~~~~~~~~D~i~~~~~~~-~~~~~~~~~~~~~~~L~-~gG~~~~~~~~~~~  152 (171)
T 1ws6_A           96 ----PVEVFLPEAKAQGERFTVAFMAPPYA-MDLAALFGELLASGLVE-AGGLYVLQHPKDLY  152 (171)
T ss_dssp             ----CHHHHHHHHHHTTCCEEEEEECCCTT-SCTTHHHHHHHHHTCEE-EEEEEEEEEETTSC
T ss_pred             ----cHHHHHHhhhccCCceEEEEECCCCc-hhHHHHHHHHHhhcccC-CCcEEEEEeCCccC
Confidence                43332    11234899999998877 66677888887  9999 99999987765433

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.60  E-value=8.6e-16  Score=123.62  Aligned_cols=99  Identities=16%  Similarity=0.027  Sum_probs=78.9

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC--------CCceEEecCCccchhhhhhccC--CCCc-
Q 024647           33 NHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL--------PNIRYELTSPAMSIAELEQNVA--AQST-  100 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~d~~~~~~--~~~~-  100 (265)
                      ++.+|||+|||+|.++..++.++. +|+|+|+|+.|++.|++.        .++.+..       +|+.++..  ++++ 
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~-------~d~~~~~~~~~~~~~  125 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVIN-------QSSLDFLKQPQNQPH  125 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEEC-------SCHHHHTTSCCSSCC
T ss_pred             CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEE-------CCHHHHHHhhccCCC
Confidence            567899999999999998777764 799999999999998752        3667777       55555432  3578 


Q ss_pred             eeEEEeccccccCChhHHHHHH--HHHhcCCCcEEEEEecC
Q 024647          101 VDLVTIAQAMHWFDLPQFYNQV--KWVLKKPNGVIATWCYT  139 (265)
Q Consensus       101 ~Dlv~~~~~~~~~~~~~~l~~~--~~~Lk~pgG~l~~~~~~  139 (265)
                      ||+|+++..+|.-+...+++.+  .++|+ |||.+++.+..
T Consensus       126 fD~I~~~~~~~~~~~~~~l~~~~~~~~Lk-pgG~l~i~~~~  165 (201)
T 2ift_A          126 FDVVFLDPPFHFNLAEQAISLLCENNWLK-PNALIYVETEK  165 (201)
T ss_dssp             EEEEEECCCSSSCHHHHHHHHHHHTTCEE-EEEEEEEEEES
T ss_pred             CCEEEECCCCCCccHHHHHHHHHhcCccC-CCcEEEEEECC
Confidence            9999999887754677888888  66899 99999986654

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.60  E-value=2e-15  Score=129.18  Aligned_cols=107  Identities=19%  Similarity=0.171  Sum_probs=86.6

Q ss_pred             HHHHhhCCCCCeEEEEcCCcchhHHHHH-hc--CCcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhc
Q 024647           25 KFITSKTTNHELAWDVGTGSGQAAASLS-GI--FENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQN   94 (265)
Q Consensus        25 ~~l~~~~~~~~~vlDvGcG~G~~~~~l~-~~--~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~   94 (265)
                      +.+....+++.+|||||||+|..+..++ ..  ..+|+|+|+|+.+++.+++.       .++.+..       +|+.++
T Consensus       110 ~~l~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~-------~d~~~~  182 (305)
T 3ocj_A          110 RALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHR-------QDAWKL  182 (305)
T ss_dssp             HHHHHHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEE-------CCGGGC
T ss_pred             HHHHhhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEE-------CchhcC
Confidence            3344445778899999999999999995 22  34899999999999998752       1267777       667777


Q ss_pred             cCCCCceeEEEeccccccC-ChhH---HHHHHHHHhcCCCcEEEEEecCC
Q 024647           95 VAAQSTVDLVTIAQAMHWF-DLPQ---FYNQVKWVLKKPNGVIATWCYTV  140 (265)
Q Consensus        95 ~~~~~~~Dlv~~~~~~~~~-~~~~---~l~~~~~~Lk~pgG~l~~~~~~~  140 (265)
                      +++ ++||+|+++.++|++ ++..   +++++.++|+ |||.+++.++..
T Consensus       183 ~~~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~  230 (305)
T 3ocj_A          183 DTR-EGYDLLTSNGLNIYEPDDARVTELYRRFWQALK-PGGALVTSFLTP  230 (305)
T ss_dssp             CCC-SCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEE-EEEEEEEECCCC
T ss_pred             Ccc-CCeEEEEECChhhhcCCHHHHHHHHHHHHHhcC-CCeEEEEEecCC
Confidence            766 899999999999988 7765   7999999999 999999977653

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.60  E-value=3.3e-15  Score=120.31  Aligned_cols=116  Identities=13%  Similarity=0.017  Sum_probs=86.0

Q ss_pred             hCCCCcHHHHHHHHhhC---CCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC------CCceEEecCC
Q 024647           15 TRPNYPEELFKFITSKT---TNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL------PNIRYELTSP   84 (265)
Q Consensus        15 ~rp~y~~~l~~~l~~~~---~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~------~~~~~~~~~~   84 (265)
                      .||. ++.+.+.+....   .++.+|||+|||+|.++..+++++. +|+++|+|+.|++.|++.      .++.+.+   
T Consensus        34 ~rp~-~~~~~~~l~~~l~~~~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~---  109 (202)
T 2fpo_A           34 LRPT-TDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVN---  109 (202)
T ss_dssp             -----CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEEC---
T ss_pred             CCCC-HHHHHHHHHHHHHhhcCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEE---
Confidence            4665 455555554433   1567899999999999999877764 899999999999998752      3677777   


Q ss_pred             ccchhhhhh-ccCCCCceeEEEeccccccCChhHHHHHHHH--HhcCCCcEEEEEecC
Q 024647           85 AMSIAELEQ-NVAAQSTVDLVTIAQAMHWFDLPQFYNQVKW--VLKKPNGVIATWCYT  139 (265)
Q Consensus        85 ~~~~~d~~~-~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~--~Lk~pgG~l~~~~~~  139 (265)
                          +|+.+ ++..+++||+|+++..+|+-+...+++.+.+  +|+ |||.+++.+..
T Consensus       110 ----~D~~~~~~~~~~~fD~V~~~~p~~~~~~~~~l~~l~~~~~L~-pgG~l~i~~~~  162 (202)
T 2fpo_A          110 ----SNAMSFLAQKGTPHNIVFVDPPFRRGLLEETINLLEDNGWLA-DEALIYVESEV  162 (202)
T ss_dssp             ----SCHHHHHSSCCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEE-EEEEEEEEEEG
T ss_pred             ----CCHHHHHhhcCCCCCEEEECCCCCCCcHHHHHHHHHhcCccC-CCcEEEEEECC
Confidence                55555 3445678999999988775577788888876  599 99999886654

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.60  E-value=5.7e-15  Score=117.11  Aligned_cols=110  Identities=19%  Similarity=0.192  Sum_probs=88.3

Q ss_pred             HHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC------CC--ceEEecCCccchhhh
Q 024647           22 ELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL------PN--IRYELTSPAMSIAEL   91 (265)
Q Consensus        22 ~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~--~~~~~~~~~~~~~d~   91 (265)
                      ...+.+....  .++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.+++.      .+  +.+..       +|+
T Consensus        39 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~d~  111 (194)
T 1dus_A           39 KGTKILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVH-------SDL  111 (194)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEE-------CST
T ss_pred             hHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEE-------Cch
Confidence            4455555544  3667999999999999999999888999999999999988752      33  77777       444


Q ss_pred             hhccCCCCceeEEEeccccccC--ChhHHHHHHHHHhcCCCcEEEEEecCC
Q 024647           92 EQNVAAQSTVDLVTIAQAMHWF--DLPQFYNQVKWVLKKPNGVIATWCYTV  140 (265)
Q Consensus        92 ~~~~~~~~~~Dlv~~~~~~~~~--~~~~~l~~~~~~Lk~pgG~l~~~~~~~  140 (265)
                      .+. .++++||+|+++..+|+.  +...+++++.++|+ |||.+++..+..
T Consensus       112 ~~~-~~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~~~~  160 (194)
T 1dus_A          112 YEN-VKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLK-DNGEIWVVIQTK  160 (194)
T ss_dssp             TTT-CTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEE-EEEEEEEEEEST
T ss_pred             hcc-cccCCceEEEECCCcccchhHHHHHHHHHHHHcC-CCCEEEEEECCC
Confidence            443 356789999999998873  56789999999999 999999877753

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.60  E-value=9.8e-16  Score=124.19  Aligned_cols=96  Identities=21%  Similarity=0.234  Sum_probs=72.1

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHH----HHHcCCCceEEecCCccchhhhhh----ccCCCCce
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIE----FATKLPNIRYELTSPAMSIAELEQ----NVAAQSTV  101 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~----~a~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~~  101 (265)
                      +++.+|||+|||+|..+..+++..  .+|+|+|+|+.|++    .+++..|+.+...+       +..    .++. ++|
T Consensus        56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d-------~~~~~~~~~~~-~~f  127 (210)
T 1nt2_A           56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFD-------ASKPWKYSGIV-EKV  127 (210)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSC-------TTCGGGTTTTC-CCE
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcC-------CCCchhhcccc-cce
Confidence            467899999999999999999876  57999999998654    44545677777643       333    2333 789


Q ss_pred             eEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647          102 DLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       102 Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      |+|+++...+ .+...+++++.++|| |||.|++..
T Consensus       128 D~V~~~~~~~-~~~~~~l~~~~r~Lk-pgG~l~i~~  161 (210)
T 1nt2_A          128 DLIYQDIAQK-NQIEILKANAEFFLK-EKGEVVIMV  161 (210)
T ss_dssp             EEEEECCCST-THHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             eEEEEeccCh-hHHHHHHHHHHHHhC-CCCEEEEEE
Confidence            9999984221 123346899999999 999999864

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.59  E-value=8.6e-15  Score=123.39  Aligned_cols=130  Identities=12%  Similarity=0.091  Sum_probs=91.6

Q ss_pred             HHHHHhhhCCCCcH------HHHHHHHhhC---CCCCeEEEEcCCc---chhHHHHHhcC--CcEEEEcCCHHHHHHHHc
Q 024647            8 QAKQYAETRPNYPE------ELFKFITSKT---TNHELAWDVGTGS---GQAAASLSGIF--ENVIGTETSPKQIEFATK   73 (265)
Q Consensus         8 ~a~~Y~~~rp~y~~------~l~~~l~~~~---~~~~~vlDvGcG~---G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~   73 (265)
                      .++.|.+..|.|..      .++..+...+   ....+|||||||+   |.++..+.+..  .+|+++|+|+.|++.|++
T Consensus        43 ~~~~~~~~~p~~~~~a~~~~~~~~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~  122 (274)
T 2qe6_A           43 LADYACKHIPGLKESAIENRKVLVRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRA  122 (274)
T ss_dssp             HHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHH
T ss_pred             HHHHHHHhcchhHHHHHHHhHHHHHHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHH
Confidence            45566666666532      2222222222   2347899999999   98887776654  579999999999999875


Q ss_pred             C----CCceEEecCCccchh---hh---hhccCCCCceeEEEeccccccC-C--hhHHHHHHHHHhcCCCcEEEEEecCC
Q 024647           74 L----PNIRYELTSPAMSIA---EL---EQNVAAQSTVDLVTIAQAMHWF-D--LPQFYNQVKWVLKKPNGVIATWCYTV  140 (265)
Q Consensus        74 ~----~~~~~~~~~~~~~~~---d~---~~~~~~~~~~Dlv~~~~~~~~~-~--~~~~l~~~~~~Lk~pgG~l~~~~~~~  140 (265)
                      +    .++.++..+..-...   ..   +.  ++.++||+|++..++||+ +  +..+++++.++|+ |||.|++.....
T Consensus       123 ~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~--~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~-pGG~l~i~~~~~  199 (274)
T 2qe6_A          123 LLAKDPNTAVFTADVRDPEYILNHPDVRRM--IDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALA-PGSYLFMTSLVD  199 (274)
T ss_dssp             HHTTCTTEEEEECCTTCHHHHHHSHHHHHH--CCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSC-TTCEEEEEEEBC
T ss_pred             hcCCCCCeEEEEeeCCCchhhhccchhhcc--CCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCC-CCcEEEEEEecC
Confidence            2    578888865421000   00   11  233589999999999999 4  6789999999999 999999877654

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.59  E-value=4e-16  Score=130.79  Aligned_cols=99  Identities=15%  Similarity=0.106  Sum_probs=75.4

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC----C-C-----------------------------
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL----P-N-----------------------------   76 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~----~-~-----------------------------   76 (265)
                      .++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|++.    + .                             
T Consensus        54 ~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~  133 (263)
T 2a14_A           54 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA  133 (263)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHh
Confidence            3567899999999998888777765 699999999999988741    1 1                             


Q ss_pred             -ce-EEecCCccchhhhhhc-cC---CCCceeEEEeccccccC-----ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647           77 -IR-YELTSPAMSIAELEQN-VA---AQSTVDLVTIAQAMHWF-----DLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        77 -~~-~~~~~~~~~~~d~~~~-~~---~~~~~Dlv~~~~~~~~~-----~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                       +. +..       +|+.+. ++   ..++||+|++++++|++     +...+++++.++|| |||.|++...
T Consensus       134 ~i~~~~~-------~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LK-PGG~li~~~~  198 (263)
T 2a14_A          134 AVKRVLK-------CDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLK-PGGHLVTTVT  198 (263)
T ss_dssp             HEEEEEE-------CCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEE-EEEEEEEEEE
T ss_pred             hhheEEe-------ccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcC-CCcEEEEEEe
Confidence             11 344       444442 22   25689999999999985     23579999999999 9999998754

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.59  E-value=6e-15  Score=121.84  Aligned_cols=95  Identities=21%  Similarity=0.211  Sum_probs=77.8

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhc--CCcEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhccCC---CCc
Q 024647           32 TNHELAWDVGTGSGQAAASLSGI--FENVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQNVAA---QST  100 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~~~~---~~~  100 (265)
                      +++.+|||+|||+|..+..++..  ..+|+|+|+|+.|++.+++      ..++.+..       +|+++++.+   +++
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~-------~d~~~~~~~~~~~~~  141 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCH-------DRAETFGQRKDVRES  141 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEE-------SCHHHHTTCTTTTTC
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEe-------ccHHHhcccccccCC
Confidence            35679999999999999999854  4589999999999998875      24677877       566666543   578


Q ss_pred             eeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647          101 VDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       101 ~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      ||+|++..   ..+...+++++.++|+ |||.+++..
T Consensus       142 fD~V~~~~---~~~~~~~l~~~~~~Lk-pgG~l~~~~  174 (240)
T 1xdz_A          142 YDIVTARA---VARLSVLSELCLPLVK-KNGLFVALK  174 (240)
T ss_dssp             EEEEEEEC---CSCHHHHHHHHGGGEE-EEEEEEEEE
T ss_pred             ccEEEEec---cCCHHHHHHHHHHhcC-CCCEEEEEe
Confidence            99999865   2478899999999999 999998864

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.59  E-value=1e-15  Score=133.58  Aligned_cols=124  Identities=10%  Similarity=0.067  Sum_probs=92.7

Q ss_pred             hHHHHHHHHHh--hhC-CCCcHHHHHHHHh-hCCCCCeEEEEcCC------cchhHHHHHhc---CCcEEEEcCCHHHHH
Q 024647            3 ELFIKQAKQYA--ETR-PNYPEELFKFITS-KTTNHELAWDVGTG------SGQAAASLSGI---FENVIGTETSPKQIE   69 (265)
Q Consensus         3 ~~f~~~a~~Y~--~~r-p~y~~~l~~~l~~-~~~~~~~vlDvGcG------~G~~~~~l~~~---~~~v~~vD~s~~~~~   69 (265)
                      ..|++.|..|.  +.+ ..+-..+++.+.. ...++.+|||||||      +|..+..+++.   ..+|+|+|+|+.|. 
T Consensus       182 ~~fd~lA~~Y~tDK~~~~h~y~~~Ye~lL~~l~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~-  260 (419)
T 3sso_A          182 PDLSELSSRYFTPKFGFLHWFTPHYDRHFRDYRNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH-  260 (419)
T ss_dssp             CCHHHHHHHTTCTTBSSSCBCHHHHHHHHGGGTTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG-
T ss_pred             ccHHHHHHHhCCCcccccchHHHHHHHHHHhhcCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh-
Confidence            36889999995  455 3333556666554 44567899999999      77777777654   35799999999984 


Q ss_pred             HHHcCCCceEEecCCccchhhhhhccCC------CCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647           70 FATKLPNIRYELTSPAMSIAELEQNVAA------QSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        70 ~a~~~~~~~~~~~~~~~~~~d~~~~~~~------~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                        ...+++.+.+       +|+.++++.      +++||+|++..+ |+. +...+++++.++|| |||++++.+.
T Consensus       261 --~~~~rI~fv~-------GDa~dlpf~~~l~~~d~sFDlVisdgs-H~~~d~~~aL~el~rvLK-PGGvlVi~Dl  325 (419)
T 3sso_A          261 --VDELRIRTIQ-------GDQNDAEFLDRIARRYGPFDIVIDDGS-HINAHVRTSFAALFPHVR-PGGLYVIEDM  325 (419)
T ss_dssp             --GCBTTEEEEE-------CCTTCHHHHHHHHHHHCCEEEEEECSC-CCHHHHHHHHHHHGGGEE-EEEEEEEECG
T ss_pred             --hcCCCcEEEE-------ecccccchhhhhhcccCCccEEEECCc-ccchhHHHHHHHHHHhcC-CCeEEEEEec
Confidence              2346888988       444554443      579999999755 555 88899999999999 9999998544

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.59  E-value=2.4e-15  Score=118.97  Aligned_cols=119  Identities=15%  Similarity=0.140  Sum_probs=91.6

Q ss_pred             hhCCCCcHHHHHHHHhhC---CCCCeEEEEcCCcchhHHHHHhcC-CcEEEEcCCHHHHHHHHcC-------CCceEEec
Q 024647           14 ETRPNYPEELFKFITSKT---TNHELAWDVGTGSGQAAASLSGIF-ENVIGTETSPKQIEFATKL-------PNIRYELT   82 (265)
Q Consensus        14 ~~rp~y~~~l~~~l~~~~---~~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~-------~~~~~~~~   82 (265)
                      ..||. ++.+.+.+....   .++.+|||+|||+|.++..+++.. .+|+|+|+|+.|++.+++.       +++.+...
T Consensus        23 ~~rp~-~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~  101 (187)
T 2fhp_A           23 NTRPT-TDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKM  101 (187)
T ss_dssp             SSCCC-CHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEES
T ss_pred             CcCcC-HHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEEC
Confidence            35676 677777776554   356899999999999999988876 4899999999999988752       35777774


Q ss_pred             CCccchhhhhhc----cCCCCceeEEEeccccccCChhHHHHHH--HHHhcCCCcEEEEEecCCC
Q 024647           83 SPAMSIAELEQN----VAAQSTVDLVTIAQAMHWFDLPQFYNQV--KWVLKKPNGVIATWCYTVP  141 (265)
Q Consensus        83 ~~~~~~~d~~~~----~~~~~~~Dlv~~~~~~~~~~~~~~l~~~--~~~Lk~pgG~l~~~~~~~~  141 (265)
                      +       +.+.    +..+++||+|+++..++..+....++.+  .++|+ |||.+++......
T Consensus       102 d-------~~~~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~-~gG~l~~~~~~~~  158 (187)
T 2fhp_A          102 D-------ANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLT-NEAVIVCETDKTV  158 (187)
T ss_dssp             C-------HHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEE-EEEEEEEEEETTC
T ss_pred             c-------HHHHHHHHHhcCCCCCEEEECCCCCchhHHHHHHHHHHhcccC-CCCEEEEEeCCcc
Confidence            4       4332    2236789999999887766777888888  88899 9999998766543

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.59  E-value=1.7e-15  Score=126.42  Aligned_cols=99  Identities=14%  Similarity=0.103  Sum_probs=80.1

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC---CC-------------------------------
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL---PN-------------------------------   76 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~---~~-------------------------------   76 (265)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.+++.   .+                               
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  134 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR  134 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence            3557899999999999999998887 899999999999988652   11                               


Q ss_pred             -c-eEEecCCccchhhhhhcc-CCC---CceeEEEeccccc----cC-ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647           77 -I-RYELTSPAMSIAELEQNV-AAQ---STVDLVTIAQAMH----WF-DLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        77 -~-~~~~~~~~~~~~d~~~~~-~~~---~~~Dlv~~~~~~~----~~-~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                       + .+..       .|+.+.. .++   ++||+|++..++|    +. ++..+++++.++|+ |||.|++...
T Consensus       135 ~v~~~~~-------~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~Lk-pgG~li~~~~  199 (265)
T 2i62_A          135 AIKQVLK-------CDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLK-PGGFLVMVDA  199 (265)
T ss_dssp             HEEEEEE-------CCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEE-EEEEEEEEEE
T ss_pred             hheeEEE-------eeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCC-CCcEEEEEec
Confidence             5 6666       4444432 244   7899999999999    54 56789999999999 9999998663

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.59  E-value=8.8e-15  Score=118.11  Aligned_cols=107  Identities=19%  Similarity=0.143  Sum_probs=86.0

Q ss_pred             cHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhh
Q 024647           20 PEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAEL   91 (265)
Q Consensus        20 ~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~   91 (265)
                      .+.+...+....  .++.+|||+|||+|..+..+++.+.+|+++|+|+.+++.+++      ..++.+..       +|+
T Consensus        62 ~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~-------~d~  134 (210)
T 3lbf_A           62 QPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHNVSTRH-------GDG  134 (210)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEE-------SCG
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCceEEEE-------CCc
Confidence            345555555543  467899999999999999999998899999999999998875      24677777       555


Q ss_pred             hhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           92 EQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        92 ~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      .+...++++||+|++..++|++..     ++.++|+ |||.+++....
T Consensus       135 ~~~~~~~~~~D~i~~~~~~~~~~~-----~~~~~L~-pgG~lv~~~~~  176 (210)
T 3lbf_A          135 WQGWQARAPFDAIIVTAAPPEIPT-----ALMTQLD-EGGILVLPVGE  176 (210)
T ss_dssp             GGCCGGGCCEEEEEESSBCSSCCT-----HHHHTEE-EEEEEEEEECS
T ss_pred             ccCCccCCCccEEEEccchhhhhH-----HHHHhcc-cCcEEEEEEcC
Confidence            555445679999999999998843     6899999 99999987655

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.59  E-value=1.3e-15  Score=119.65  Aligned_cols=118  Identities=15%  Similarity=0.045  Sum_probs=83.4

Q ss_pred             hCCCCcHHHHHHHHhhC---CCCCeEEEEcCCcchhHHHHHhcC-CcEEEEcCCHHHHHHHHcC-------CCceEEecC
Q 024647           15 TRPNYPEELFKFITSKT---TNHELAWDVGTGSGQAAASLSGIF-ENVIGTETSPKQIEFATKL-------PNIRYELTS   83 (265)
Q Consensus        15 ~rp~y~~~l~~~l~~~~---~~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~   83 (265)
                      .||. ++.+.+.+....   .++.+|||+|||+|.++..+++.. .+|+|+|+|+.|++.+++.       .++.+..  
T Consensus        11 ~rp~-~~~~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~--   87 (177)
T 2esr_A           11 TRPT-SDKVRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLK--   87 (177)
T ss_dssp             --------CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEEC--
T ss_pred             CCcC-HHHHHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEE--
Confidence            3554 444555554433   356899999999999999999885 4899999999999998752       2466766  


Q ss_pred             Cccchhhhhh-ccCCCCceeEEEeccccccCChhHHHHHHH--HHhcCCCcEEEEEecCCC
Q 024647           84 PAMSIAELEQ-NVAAQSTVDLVTIAQAMHWFDLPQFYNQVK--WVLKKPNGVIATWCYTVP  141 (265)
Q Consensus        84 ~~~~~~d~~~-~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~--~~Lk~pgG~l~~~~~~~~  141 (265)
                           +|+.+ ++..+++||+|+++..++......+++.+.  ++|+ |||.+++......
T Consensus        88 -----~d~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~-~gG~l~~~~~~~~  142 (177)
T 2esr_A           88 -----MEAERAIDCLTGRFDLVFLDPPYAKETIVATIEALAAKNLLS-EQVMVVCETDKTV  142 (177)
T ss_dssp             -----SCHHHHHHHBCSCEEEEEECCSSHHHHHHHHHHHHHHTTCEE-EEEEEEEEEETTC
T ss_pred             -----CcHHHhHHhhcCCCCEEEECCCCCcchHHHHHHHHHhCCCcC-CCcEEEEEECCcc
Confidence                 44444 232345799999987766555667788887  9999 9999998776543

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.58  E-value=1.3e-14  Score=117.58  Aligned_cols=99  Identities=19%  Similarity=0.309  Sum_probs=81.2

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhcc--CCCCce
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQNV--AAQSTV  101 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~~--~~~~~~  101 (265)
                      +++.+|||+|||+|.++..+++.+  .+++|+|+|+.+++.|++      ..++.+..+       |+..++  +++++|
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~-------d~~~~~~~~~~~~~  112 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWV-------DGSDLTDYFEDGEI  112 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEEC-------CSSCGGGTSCTTCC
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeC-------CHHHHHhhcCCCCC
Confidence            456889999999999999999886  479999999999998875      257888884       444444  567789


Q ss_pred             eEEEeccccccCC---------hhHHHHHHHHHhcCCCcEEEEEec
Q 024647          102 DLVTIAQAMHWFD---------LPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       102 Dlv~~~~~~~~~~---------~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      |+|++++..+|..         ...+++++.++|+ |||.+++.+.
T Consensus       113 D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~  157 (214)
T 1yzh_A          113 DRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILP-ENGEIHFKTD  157 (214)
T ss_dssp             SEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSC-TTCEEEEEES
T ss_pred             CEEEEECCCCccccchhhhccCCHHHHHHHHHHcC-CCcEEEEEeC
Confidence            9999998777653         2479999999999 9999988654

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.58  E-value=1.1e-14  Score=114.11  Aligned_cols=107  Identities=19%  Similarity=0.169  Sum_probs=80.9

Q ss_pred             HHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC------C-CceEEecCCccchhh
Q 024647           22 ELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL------P-NIRYELTSPAMSIAE   90 (265)
Q Consensus        22 ~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~------~-~~~~~~~~~~~~~~d   90 (265)
                      ++...+....  .++.+|||+|||+|.++..+++..  .+|+++|+|+.+++.+++.      + ++ +...+.      
T Consensus        12 ~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~------   84 (178)
T 3hm2_A           12 HVRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGA------   84 (178)
T ss_dssp             HHHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCT------
T ss_pred             HHHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecch------
Confidence            3444444432  456799999999999999999884  5799999999999998752      2 55 555332      


Q ss_pred             hhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           91 LEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        91 ~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      .+.++...++||+|++...+|+   ..+++++.++|+ |||.+++....
T Consensus        85 ~~~~~~~~~~~D~i~~~~~~~~---~~~l~~~~~~L~-~gG~l~~~~~~  129 (178)
T 3hm2_A           85 PRAFDDVPDNPDVIFIGGGLTA---PGVFAAAWKRLP-VGGRLVANAVT  129 (178)
T ss_dssp             TGGGGGCCSCCSEEEECC-TTC---TTHHHHHHHTCC-TTCEEEEEECS
T ss_pred             HhhhhccCCCCCEEEECCcccH---HHHHHHHHHhcC-CCCEEEEEeec
Confidence            1233333378999999998887   789999999999 99999987664

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.58  E-value=4.9e-15  Score=118.42  Aligned_cols=102  Identities=18%  Similarity=0.148  Sum_probs=80.5

Q ss_pred             hCCCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhcc-CCC
Q 024647           30 KTTNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNV-AAQ   98 (265)
Q Consensus        30 ~~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~-~~~   98 (265)
                      ..+++.+|||+|||+|..+..+++..   .+|+|+|+|+.+++.|++.       .++.+..       +|+.+++ ..+
T Consensus        19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~-------~d~~~~~~~~~   91 (197)
T 3eey_A           19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIK-------DGHQNMDKYID   91 (197)
T ss_dssp             HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEEC-------SCGGGGGGTCC
T ss_pred             cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEE-------CCHHHHhhhcc
Confidence            45677899999999999999999874   4899999999999998752       4677777       5555553 455


Q ss_pred             CceeEEEeccccc-----cC-----ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           99 STVDLVTIAQAMH-----WF-----DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        99 ~~~Dlv~~~~~~~-----~~-----~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      ++||+|+++..+.     +.     +...+++++.++|+ |||.+++..+.
T Consensus        92 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-~gG~l~~~~~~  141 (197)
T 3eey_A           92 CPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLV-TGGIITVVIYY  141 (197)
T ss_dssp             SCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEE-EEEEEEEEECC
T ss_pred             CCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCc-CCCEEEEEEcc
Confidence            7899999987551     11     23479999999999 99999987664

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.57  E-value=2.8e-15  Score=117.85  Aligned_cols=108  Identities=10%  Similarity=0.144  Sum_probs=85.1

Q ss_pred             HHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhc--CCcEEEEcCCHHHHHHHHcC---CCc--eEEecCCccchhhhhh
Q 024647           21 EELFKFITSKTTNHELAWDVGTGSGQAAASLSGI--FENVIGTETSPKQIEFATKL---PNI--RYELTSPAMSIAELEQ   93 (265)
Q Consensus        21 ~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~---~~~--~~~~~~~~~~~~d~~~   93 (265)
                      ++++..+..+.+++++|||+|||+|.++..++..  ..+|+|+|+|+.|++.+++.   .++  ++..       .|...
T Consensus        37 d~fY~~~~~~l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~-------~d~~~  109 (200)
T 3fzg_A           37 NDFYTYVFGNIKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF-------LNKES  109 (200)
T ss_dssp             HHHHHHHHHHSCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE-------ECCHH
T ss_pred             HHHHHHHHhhcCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE-------ecccc
Confidence            6667777777888899999999999999999776  44899999999999998852   111  2222       22222


Q ss_pred             ccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEe
Q 024647           94 NVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        94 ~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      . .+.++||+|++...+|.+ +.+..+.++.+.|+ |||.++-..
T Consensus       110 ~-~~~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~-pggvfISfp  152 (200)
T 3fzg_A          110 D-VYKGTYDVVFLLKMLPVLKQQDVNILDFLQLFH-TQNFVISFP  152 (200)
T ss_dssp             H-HTTSEEEEEEEETCHHHHHHTTCCHHHHHHTCE-EEEEEEEEE
T ss_pred             c-CCCCCcChhhHhhHHHhhhhhHHHHHHHHHHhC-CCCEEEEeC
Confidence            2 366889999999999999 55677779999999 999998655

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.57  E-value=1.9e-14  Score=121.31  Aligned_cols=96  Identities=16%  Similarity=0.077  Sum_probs=77.0

Q ss_pred             CCCCCeEEEEcCCcchhHHH-HHh-cCCcEEEEcCCHHHHHHHHcC------CCceEEecCCccchhhhhhccCCCCcee
Q 024647           31 TTNHELAWDVGTGSGQAAAS-LSG-IFENVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAELEQNVAAQSTVD  102 (265)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~-l~~-~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d~~~~~~~~~~~D  102 (265)
                      .+++++|||||||+|.++.. +++ .+++|+|+|+|+.|++.|+++      .++++.+       +|+.+++  +++||
T Consensus       120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~-------gDa~~l~--d~~FD  190 (298)
T 3fpf_A          120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVIT-------GDETVID--GLEFD  190 (298)
T ss_dssp             CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEE-------SCGGGGG--GCCCS
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEE-------CchhhCC--CCCcC
Confidence            46789999999999876644 454 367899999999999998862      5677777       5556654  68999


Q ss_pred             EEEeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          103 LVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       103 lv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      +|++...  .-+..++++++.++|| |||+|++...
T Consensus       191 vV~~~a~--~~d~~~~l~el~r~Lk-PGG~Lvv~~~  223 (298)
T 3fpf_A          191 VLMVAAL--AEPKRRVFRNIHRYVD-TETRIIYRTY  223 (298)
T ss_dssp             EEEECTT--CSCHHHHHHHHHHHCC-TTCEEEEEEC
T ss_pred             EEEECCC--ccCHHHHHHHHHHHcC-CCcEEEEEcC
Confidence            9998654  2378899999999999 9999998553

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.56  E-value=1.1e-14  Score=120.04  Aligned_cols=100  Identities=18%  Similarity=0.224  Sum_probs=77.2

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHc------------CCCceEEecCCccchhhhhh-cc-
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATK------------LPNIRYELTSPAMSIAELEQ-NV-   95 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~------------~~~~~~~~~~~~~~~~d~~~-~~-   95 (265)
                      .++.+|||||||+|.++..+++.++  +|+|+|+|+.|++.|++            ..|+.+..++       +.. ++ 
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d-------~~~~l~~  117 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSN-------AMKHLPN  117 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECC-------TTTCHHH
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECc-------HHHhhhh
Confidence            4557899999999999999998864  69999999999987752            3578888844       443 33 


Q ss_pred             -CCCCceeEEEeccccccCC---------hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           96 -AAQSTVDLVTIAQAMHWFD---------LPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        96 -~~~~~~Dlv~~~~~~~~~~---------~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                       ++++++|.|++.+.-+|+.         ...+++++.++|+ |||.|++.+..
T Consensus       118 ~~~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~Lk-pGG~l~~~td~  170 (235)
T 3ckk_A          118 FFYKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLR-VGGLVYTITDV  170 (235)
T ss_dssp             HCCTTCEEEEEEESCC-----------CCCHHHHHHHHHHEE-EEEEEEEEESC
T ss_pred             hCCCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCC-CCCEEEEEeCC
Confidence             5678999999877666652         1479999999999 99999986643

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.56  E-value=8.4e-15  Score=117.86  Aligned_cols=107  Identities=19%  Similarity=0.156  Sum_probs=86.2

Q ss_pred             HHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC------CCceEEecCCccchhhhhh
Q 024647           21 EELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAELEQ   93 (265)
Q Consensus        21 ~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d~~~   93 (265)
                      ..+.+.+....+++.+|||+|||+|.++..+++... +|+|+|+|+.|++.|++.      .++.+..       +|+.+
T Consensus        48 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~-------~d~~~  120 (205)
T 3grz_A           48 QLAMLGIERAMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQK-------TSLLA  120 (205)
T ss_dssp             HHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEE-------SSTTT
T ss_pred             HHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEe-------ccccc
Confidence            446666666667788999999999999999998755 899999999999988752      3477777       45444


Q ss_pred             ccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           94 NVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        94 ~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      .  .+++||+|+++..+|++  ..+++++.++|+ |||.+++..+.
T Consensus       121 ~--~~~~fD~i~~~~~~~~~--~~~l~~~~~~L~-~gG~l~~~~~~  161 (205)
T 3grz_A          121 D--VDGKFDLIVANILAEIL--LDLIPQLDSHLN-EDGQVIFSGID  161 (205)
T ss_dssp             T--CCSCEEEEEEESCHHHH--HHHGGGSGGGEE-EEEEEEEEEEE
T ss_pred             c--CCCCceEEEECCcHHHH--HHHHHHHHHhcC-CCCEEEEEecC
Confidence            3  45789999999877763  688999999999 99999986554

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.55  E-value=1.1e-14  Score=119.12  Aligned_cols=105  Identities=19%  Similarity=0.191  Sum_probs=81.2

Q ss_pred             HhhCCCCCeEEEEcCC-cchhHHHHHhc-CCcEEEEcCCHHHHHHHHcC-----CCceEEecCCccchhhhhhccCCCCc
Q 024647           28 TSKTTNHELAWDVGTG-SGQAAASLSGI-FENVIGTETSPKQIEFATKL-----PNIRYELTSPAMSIAELEQNVAAQST  100 (265)
Q Consensus        28 ~~~~~~~~~vlDvGcG-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~d~~~~~~~~~~  100 (265)
                      ....+++.+|||+||| +|.++..+++. ..+|+|+|+|+.+++.|++.     .++.+..+++.    .+.  ++++++
T Consensus        50 ~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~----~~~--~~~~~~  123 (230)
T 3evz_A           50 KTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGG----IIK--GVVEGT  123 (230)
T ss_dssp             HTTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSC----SST--TTCCSC
T ss_pred             HhhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCch----hhh--hcccCc
Confidence            3445678899999999 99999999998 68999999999999998752     25777774431    122  234589


Q ss_pred             eeEEEeccccccCC--------------------hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          101 VDLVTIAQAMHWFD--------------------LPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       101 ~Dlv~~~~~~~~~~--------------------~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      ||+|+++..+++.+                    ...+++++.++|+ |||.+++..+.
T Consensus       124 fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~  181 (230)
T 3evz_A          124 FDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLN-PGGKVALYLPD  181 (230)
T ss_dssp             EEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEE-EEEEEEEEEES
T ss_pred             eeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhC-CCeEEEEEecc
Confidence            99999998776542                    2678999999999 99999987654

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.55  E-value=1.5e-14  Score=121.58  Aligned_cols=95  Identities=17%  Similarity=0.284  Sum_probs=73.8

Q ss_pred             CCCeEEEEcCCcch----hHHHHHhc------CCcEEEEcCCHHHHHHHHcCC---------------------------
Q 024647           33 NHELAWDVGTGSGQ----AAASLSGI------FENVIGTETSPKQIEFATKLP---------------------------   75 (265)
Q Consensus        33 ~~~~vlDvGcG~G~----~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~---------------------------   75 (265)
                      ++.+|||+|||||.    ++..|++.      ..+|+|+|+|+.|++.|++..                           
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            34689999999998    55556665      237999999999999998520                           


Q ss_pred             ----------CceEEecCCccchhhhhhccCC-CCceeEEEeccccccCChh---HHHHHHHHHhcCCCcEEEE
Q 024647           76 ----------NIRYELTSPAMSIAELEQNVAA-QSTVDLVTIAQAMHWFDLP---QFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus        76 ----------~~~~~~~~~~~~~~d~~~~~~~-~~~~Dlv~~~~~~~~~~~~---~~l~~~~~~Lk~pgG~l~~  135 (265)
                                ++.|.+       .|+.+.+++ .++||+|+|.++++|++++   ++++++.++|+ |||.|++
T Consensus       185 ~~~v~~~lr~~V~F~~-------~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~-pgG~L~l  250 (274)
T 1af7_A          185 LVRVRQELANYVEFSS-------VNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLK-PDGLLFA  250 (274)
T ss_dssp             EEEECHHHHTTEEEEE-------CCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEE-EEEEEEE
T ss_pred             ceeechhhcccCeEEe-------cccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhC-CCcEEEE
Confidence                      234444       555554333 5789999999999999654   79999999999 9999987

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.55  E-value=4.9e-15  Score=129.63  Aligned_cols=99  Identities=14%  Similarity=0.150  Sum_probs=79.2

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhc-CC-cEEEEcCCHHHHHHHHc---------------CCCceEEecCCccchhhhhhc
Q 024647           32 TNHELAWDVGTGSGQAAASLSGI-FE-NVIGTETSPKQIEFATK---------------LPNIRYELTSPAMSIAELEQN   94 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~---------------~~~~~~~~~~~~~~~~d~~~~   94 (265)
                      .++.+|||||||+|.++..++.. .. +|+|||+|+.|++.|++               ..++.+++       +|+.++
T Consensus       172 ~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~-------GD~~~l  244 (438)
T 3uwp_A          172 TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLER-------GDFLSE  244 (438)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEE-------CCTTSH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEE-------CcccCC
Confidence            57789999999999999999865 34 49999999999887763               14577777       555555


Q ss_pred             cCCC--CceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647           95 VAAQ--STVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        95 ~~~~--~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      ++.+  ..+|+|+++..+++.+....+.++.++|| |||.|++...
T Consensus       245 p~~d~~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLK-PGGrIVssE~  289 (438)
T 3uwp_A          245 EWRERIANTSVIFVNNFAFGPEVDHQLKERFANMK-EGGRIVSSKP  289 (438)
T ss_dssp             HHHHHHHTCSEEEECCTTCCHHHHHHHHHHHTTSC-TTCEEEESSC
T ss_pred             ccccccCCccEEEEcccccCchHHHHHHHHHHcCC-CCcEEEEeec
Confidence            5432  46999999887776678889999999999 9999998544

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.55  E-value=2.1e-14  Score=117.62  Aligned_cols=107  Identities=21%  Similarity=0.215  Sum_probs=84.9

Q ss_pred             cHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC----CCceEEecCCccchhhhhh
Q 024647           20 PEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL----PNIRYELTSPAMSIAELEQ   93 (265)
Q Consensus        20 ~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~d~~~   93 (265)
                      .+.+...+....  .++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.+++.    .++.+..       +|+..
T Consensus        55 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~-------~d~~~  127 (231)
T 1vbf_A           55 ALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLIL-------GDGTL  127 (231)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEE-------SCGGG
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcCCeEEEE-------CCccc
Confidence            455666665554  4668999999999999999999999999999999999998762    2677777       45554


Q ss_pred             ccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           94 NVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        94 ~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      ....+++||+|++..++|++.     +++.++|+ |||.+++....
T Consensus       128 ~~~~~~~fD~v~~~~~~~~~~-----~~~~~~L~-pgG~l~~~~~~  167 (231)
T 1vbf_A          128 GYEEEKPYDRVVVWATAPTLL-----CKPYEQLK-EGGIMILPIGV  167 (231)
T ss_dssp             CCGGGCCEEEEEESSBBSSCC-----HHHHHTEE-EEEEEEEEECS
T ss_pred             ccccCCCccEEEECCcHHHHH-----HHHHHHcC-CCcEEEEEEcC
Confidence            222457899999999998874     36899999 99999987654

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.55  E-value=1.3e-14  Score=116.30  Aligned_cols=108  Identities=12%  Similarity=0.175  Sum_probs=80.7

Q ss_pred             HHHHHHHHhh--CCCCCeEEEEcCCcchhHHHHHhcC----CcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhc
Q 024647           21 EELFKFITSK--TTNHELAWDVGTGSGQAAASLSGIF----ENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQN   94 (265)
Q Consensus        21 ~~l~~~l~~~--~~~~~~vlDvGcG~G~~~~~l~~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   94 (265)
                      -++.+.+..+  .+++.+|||+|||+|.++..++++.    .+|+|+|+|+.+     ..+++.+.+.+.       .+.
T Consensus         8 ~kl~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----~~~~v~~~~~d~-------~~~   75 (201)
T 2plw_A            8 YKLIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----PIPNVYFIQGEI-------GKD   75 (201)
T ss_dssp             HHHHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----CCTTCEEEECCT-------TTT
T ss_pred             HHHHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----CCCCceEEEccc-------cch
Confidence            3666655544  3567899999999999999999875    479999999942     235778877543       333


Q ss_pred             c-------------------------CCCCceeEEEeccccccC-----Chh-------HHHHHHHHHhcCCCcEEEEEe
Q 024647           95 V-------------------------AAQSTVDLVTIAQAMHWF-----DLP-------QFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        95 ~-------------------------~~~~~~Dlv~~~~~~~~~-----~~~-------~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      +                         +++++||+|+++.++|+.     +..       .+++++.++|+ |||.+++..
T Consensus        76 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lk-pgG~lv~~~  154 (201)
T 2plw_A           76 NMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYIN-IGGTYIVKM  154 (201)
T ss_dssp             SSCCC-----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             hhhhhccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHcc-CCCEEEEEE
Confidence            2                         356789999999988874     222       37889999999 999999866


Q ss_pred             cCCC
Q 024647          138 YTVP  141 (265)
Q Consensus       138 ~~~~  141 (265)
                      +...
T Consensus       155 ~~~~  158 (201)
T 2plw_A          155 YLGS  158 (201)
T ss_dssp             ECST
T ss_pred             eCCC
Confidence            5533

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.54  E-value=1.6e-14  Score=121.85  Aligned_cols=110  Identities=12%  Similarity=0.090  Sum_probs=79.8

Q ss_pred             cHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHH-HcCCCceEE-ecCCccchhhhhhc
Q 024647           20 PEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFA-TKLPNIRYE-LTSPAMSIAELEQN   94 (265)
Q Consensus        20 ~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a-~~~~~~~~~-~~~~~~~~~d~~~~   94 (265)
                      ..++.+.+....  .++.+|||+|||||.+|..++++++ +|+|+|+|+.|++.+ +..+.+... ..+++..  ..+. 
T Consensus        70 ~~Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l--~~~~-  146 (291)
T 3hp7_A           70 GLKLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYA--EPVD-  146 (291)
T ss_dssp             HHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGC--CGGG-
T ss_pred             HHHHHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcccceecccCceec--chhh-
Confidence            346666665543  3567999999999999999999875 899999999999874 433444332 2222111  1122 


Q ss_pred             cCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEE
Q 024647           95 VAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATW  136 (265)
Q Consensus        95 ~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~  136 (265)
                       ++..+||+|++..++|+  ...++.++.++|+ |||.+++.
T Consensus       147 -l~~~~fD~v~~d~sf~s--l~~vL~e~~rvLk-pGG~lv~l  184 (291)
T 3hp7_A          147 -FTEGLPSFASIDVSFIS--LNLILPALAKILV-DGGQVVAL  184 (291)
T ss_dssp             -CTTCCCSEEEECCSSSC--GGGTHHHHHHHSC-TTCEEEEE
T ss_pred             -CCCCCCCEEEEEeeHhh--HHHHHHHHHHHcC-cCCEEEEE
Confidence             24446999999888774  4889999999999 99999875

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.54  E-value=4.1e-16  Score=128.70  Aligned_cols=94  Identities=14%  Similarity=0.119  Sum_probs=80.5

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCCCCceeEEE
Q 024647           33 NHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAAQSTVDLVT  105 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~  105 (265)
                      ++.+|||+|||+|..+..+++.+.+|+|+|+|+.|++.+++.       .++.+..       +|+.+++ ++++||+|+
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~-------~d~~~~~-~~~~~D~v~  149 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFIC-------GDFLLLA-SFLKADVVF  149 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEE-------SCHHHHG-GGCCCSEEE
T ss_pred             CCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEE-------CChHHhc-ccCCCCEEE
Confidence            678999999999999999999999999999999999988752       3677777       6666665 567999999


Q ss_pred             eccccccC-ChhHHHHHHHHHhcCCCcEEEE
Q 024647          106 IAQAMHWF-DLPQFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus       106 ~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~  135 (265)
                      ++..+|+. +....+.++.++|+ |||.+++
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~L~-pgG~~i~  179 (241)
T 3gdh_A          150 LSPPWGGPDYATAETFDIRTMMS-PDGFEIF  179 (241)
T ss_dssp             ECCCCSSGGGGGSSSBCTTTSCS-SCHHHHH
T ss_pred             ECCCcCCcchhhhHHHHHHhhcC-CcceeHH
Confidence            99999988 55567888999999 9999665

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.54  E-value=1.6e-14  Score=117.36  Aligned_cols=108  Identities=17%  Similarity=0.282  Sum_probs=81.9

Q ss_pred             CcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHH----Hc------CCCceEEecCCcc
Q 024647           19 YPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFA----TK------LPNIRYELTSPAM   86 (265)
Q Consensus        19 y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a----~~------~~~~~~~~~~~~~   86 (265)
                      +..+.++.+.  ..++.+|||+|||+|.++..+++.+  .+|+|+|+|+.|++.+    ++      .+++.+.+     
T Consensus        15 ~~~~~~~~l~--~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~-----   87 (218)
T 3mq2_A           15 FSDAEFEQLR--SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLW-----   87 (218)
T ss_dssp             CCHHHHHHHH--TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEE-----
T ss_pred             cCHHHHHHhh--ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEe-----
Confidence            4556666654  3566789999999999999999985  5799999999988852    21      24778877     


Q ss_pred             chhhhhhccCCCCceeEEEecc---cc--ccC-ChhHHHHHHHHHhcCCCcEEEEEe
Q 024647           87 SIAELEQNVAAQSTVDLVTIAQ---AM--HWF-DLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        87 ~~~d~~~~~~~~~~~Dlv~~~~---~~--~~~-~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                        +|++++++++++ |.|....   ..  |++ ++..+++++.++|| |||.+++..
T Consensus        88 --~d~~~l~~~~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~  140 (218)
T 3mq2_A           88 --ATAERLPPLSGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCR-PGASFLVAL  140 (218)
T ss_dssp             --CCSTTCCSCCCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEE-EEEEEEEEE
T ss_pred             --cchhhCCCCCCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcC-CCcEEEEEe
Confidence              666777776666 7666433   33  255 77899999999999 999999843

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.53  E-value=1e-14  Score=113.84  Aligned_cols=99  Identities=13%  Similarity=0.128  Sum_probs=79.5

Q ss_pred             CCCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhcc--------CCCC
Q 024647           31 TTNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNV--------AAQS   99 (265)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~   99 (265)
                      ..++.+|||+|||+|.++..+++..   .+++++|+++ |++.    .++.+...+       +.+.+        ++++
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----~~~~~~~~d-------~~~~~~~~~~~~~~~~~   87 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----VGVDFLQGD-------FRDELVMKALLERVGDS   87 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----TTEEEEESC-------TTSHHHHHHHHHHHTTC
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----CcEEEEEcc-------cccchhhhhhhccCCCC
Confidence            3567899999999999999999873   5899999999 7533    577787744       33333        4667


Q ss_pred             ceeEEEeccccccC-Ch-----------hHHHHHHHHHhcCCCcEEEEEecCCCC
Q 024647          100 TVDLVTIAQAMHWF-DL-----------PQFYNQVKWVLKKPNGVIATWCYTVPE  142 (265)
Q Consensus       100 ~~Dlv~~~~~~~~~-~~-----------~~~l~~~~~~Lk~pgG~l~~~~~~~~~  142 (265)
                      +||+|+++..+|++ +.           ..+++++.++|+ |||.+++..+....
T Consensus        88 ~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~~~~~~  141 (180)
T 1ej0_A           88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLA-PGGSFVVKVFQGEG  141 (180)
T ss_dssp             CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEEEEESSTT
T ss_pred             ceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcC-CCcEEEEEEecCCc
Confidence            99999999999988 54           689999999999 99999987765444

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.53  E-value=5.4e-14  Score=115.25  Aligned_cols=119  Identities=23%  Similarity=0.219  Sum_probs=83.3

Q ss_pred             HhhhCCCCcHHHHHHHHhhC-----CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHH----HHHHcCCCceE
Q 024647           12 YAETRPNYPEELFKFITSKT-----TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQI----EFATKLPNIRY   79 (265)
Q Consensus        12 Y~~~rp~y~~~l~~~l~~~~-----~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~----~~a~~~~~~~~   79 (265)
                      |+.+.|. ..++...+....     .++.+|||+|||+|..+..+++..   .+|+|+|+|+.|+    +.++++.|+.+
T Consensus        51 yr~w~~~-~skla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~  129 (232)
T 3id6_C           51 YREWNAF-RSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFP  129 (232)
T ss_dssp             EEECCTT-TCHHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEE
T ss_pred             hhhhchH-HHHHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEE
Confidence            6666664 556666665433     477899999999999999999864   3799999999885    44555688988


Q ss_pred             EecCCccchhhhhhccCCCCceeEEEeccccccCChhHH-HHHHHHHhcCCCcEEEEEec
Q 024647           80 ELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQF-YNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        80 ~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~-l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      ...+++    .........++||+|+++.+.  .+.... ...+.+.|| |||.|++...
T Consensus       130 i~~Da~----~~~~~~~~~~~~D~I~~d~a~--~~~~~il~~~~~~~Lk-pGG~lvisik  182 (232)
T 3id6_C          130 LLADAR----FPQSYKSVVENVDVLYVDIAQ--PDQTDIAIYNAKFFLK-VNGDMLLVIK  182 (232)
T ss_dssp             EECCTT----CGGGTTTTCCCEEEEEECCCC--TTHHHHHHHHHHHHEE-EEEEEEEEEC
T ss_pred             EEcccc----cchhhhccccceEEEEecCCC--hhHHHHHHHHHHHhCC-CCeEEEEEEc
Confidence            885542    111111124689999998654  344444 455666999 9999998643

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.53  E-value=4.8e-14  Score=111.52  Aligned_cols=109  Identities=20%  Similarity=0.299  Sum_probs=87.1

Q ss_pred             cHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhh
Q 024647           20 PEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAE   90 (265)
Q Consensus        20 ~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d   90 (265)
                      ++.+...+....  .++.+|||+|||+|..+..+++.+.+|+++|+|+.+++.+++.       .++.+..       +|
T Consensus        18 ~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~-------~d   90 (192)
T 1l3i_A           18 AMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLME-------GD   90 (192)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEE-------SC
T ss_pred             hHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEe-------cC
Confidence            567777766543  4678999999999999999999888999999999999988752       4677777       44


Q ss_pred             hhhccCCC-CceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           91 LEQNVAAQ-STVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        91 ~~~~~~~~-~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +... ++. ++||+|++...++  +...+++++.++|+ |||.+++..+.
T Consensus        91 ~~~~-~~~~~~~D~v~~~~~~~--~~~~~l~~~~~~l~-~gG~l~~~~~~  136 (192)
T 1l3i_A           91 APEA-LCKIPDIDIAVVGGSGG--ELQEILRIIKDKLK-PGGRIIVTAIL  136 (192)
T ss_dssp             HHHH-HTTSCCEEEEEESCCTT--CHHHHHHHHHHTEE-EEEEEEEEECB
T ss_pred             HHHh-cccCCCCCEEEECCchH--HHHHHHHHHHHhcC-CCcEEEEEecC
Confidence            4441 222 5899999987765  45789999999999 99999987664

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.53  E-value=3.2e-14  Score=116.72  Aligned_cols=107  Identities=19%  Similarity=0.191  Sum_probs=80.2

Q ss_pred             hCCCCcHHHHHHH---HhhC--CCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHc----CCCceEEecC
Q 024647           15 TRPNYPEELFKFI---TSKT--TNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATK----LPNIRYELTS   83 (265)
Q Consensus        15 ~rp~y~~~l~~~l---~~~~--~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~----~~~~~~~~~~   83 (265)
                      ..|. ..+++..+   ....  .++.+|||+|||+|.++..+++..  .+|+|+|+|+.|++.+++    ..++.+... 
T Consensus        52 ~~~~-~~~~~~~i~~~l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~-  129 (230)
T 1fbn_A           52 WNPN-KSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILG-  129 (230)
T ss_dssp             CCTT-TCHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEEC-
T ss_pred             eCcc-hhHHHHHHHhcccccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEEC-
Confidence            3444 33444555   3332  466899999999999999999886  689999999999988764    356777774 


Q ss_pred             Cccchhhhhh----ccCCCCceeEEEeccccccC-Ch---hHHHHHHHHHhcCCCcEEEEE
Q 024647           84 PAMSIAELEQ----NVAAQSTVDLVTIAQAMHWF-DL---PQFYNQVKWVLKKPNGVIATW  136 (265)
Q Consensus        84 ~~~~~~d~~~----~~~~~~~~Dlv~~~~~~~~~-~~---~~~l~~~~~~Lk~pgG~l~~~  136 (265)
                            |+..    .++. ++||+|+     |.+ ++   ..+++++.++|+ |||.+++.
T Consensus       130 ------d~~~~~~~~~~~-~~~D~v~-----~~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~  177 (230)
T 1fbn_A          130 ------DANKPQEYANIV-EKVDVIY-----EDVAQPNQAEILIKNAKWFLK-KGGYGMIA  177 (230)
T ss_dssp             ------CTTCGGGGTTTS-CCEEEEE-----ECCCSTTHHHHHHHHHHHHEE-EEEEEEEE
T ss_pred             ------CCCCcccccccC-ccEEEEE-----EecCChhHHHHHHHHHHHhCC-CCcEEEEE
Confidence                  4444    4444 7899999     334 55   678999999999 99999885

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.52  E-value=2.9e-14  Score=123.78  Aligned_cols=94  Identities=17%  Similarity=0.173  Sum_probs=77.9

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCCCCceeE
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAAQSTVDL  103 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dl  103 (265)
                      .++.+|||||||+|.++..+++.+. +|+|+|+|+ |++.|++.       .++.+..       +|++++++++++||+
T Consensus        63 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~-------~d~~~~~~~~~~~D~  134 (340)
T 2fyt_A           63 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIK-------GKIEEVHLPVEKVDV  134 (340)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEE-------SCTTTSCCSCSCEEE
T ss_pred             cCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEE-------eeHHHhcCCCCcEEE
Confidence            5678999999999999999999875 799999997 89888752       5677777       666777777789999


Q ss_pred             EEecc---ccccC-ChhHHHHHHHHHhcCCCcEEE
Q 024647          104 VTIAQ---AMHWF-DLPQFYNQVKWVLKKPNGVIA  134 (265)
Q Consensus       104 v~~~~---~~~~~-~~~~~l~~~~~~Lk~pgG~l~  134 (265)
                      |++..   .+++. +...++.++.++|| |||.++
T Consensus       135 Ivs~~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~li  168 (340)
T 2fyt_A          135 IISEWMGYFLLFESMLDSVLYAKNKYLA-KGGSVY  168 (340)
T ss_dssp             EEECCCBTTBTTTCHHHHHHHHHHHHEE-EEEEEE
T ss_pred             EEEcCchhhccCHHHHHHHHHHHHhhcC-CCcEEE
Confidence            99977   34444 46679999999999 999987

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.52  E-value=6.8e-15  Score=118.66  Aligned_cols=127  Identities=15%  Similarity=0.035  Sum_probs=76.4

Q ss_pred             HHHHHHHHhhC---CCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhcc
Q 024647           21 EELFKFITSKT---TNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNV   95 (265)
Q Consensus        21 ~~l~~~l~~~~---~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   95 (265)
                      +.+++++....   .++.+|||+|||+|.++..+++.++  +++|+|+|+.|++.+++...  ....++++..+|+.+ +
T Consensus        15 ~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~--~~~~~~~~~~~d~~~-~   91 (215)
T 4dzr_A           15 EVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAE--RFGAVVDWAAADGIE-W   91 (215)
T ss_dssp             HHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------------CCHHHHHH-H
T ss_pred             HHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHH--HhCCceEEEEcchHh-h
Confidence            45566666554   5678999999999999999999864  79999999999999985311  111144555588776 3


Q ss_pred             CCC-----CceeEEEeccccccC-Ch--------------------------hHHHHHHHHHhcCCCcEEEEEecCCCCC
Q 024647           96 AAQ-----STVDLVTIAQAMHWF-DL--------------------------PQFYNQVKWVLKKPNGVIATWCYTVPEV  143 (265)
Q Consensus        96 ~~~-----~~~Dlv~~~~~~~~~-~~--------------------------~~~l~~~~~~Lk~pgG~l~~~~~~~~~~  143 (265)
                      +++     ++||+|+++..++.. +.                          ..+++++.++|+ |||.+++....... 
T Consensus        92 ~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~-  169 (215)
T 4dzr_A           92 LIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLA-RGRAGVFLEVGHNQ-  169 (215)
T ss_dssp             HHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBC-SSSEEEEEECTTSC-
T ss_pred             hhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhc-CCCeEEEEEECCcc-
Confidence            444     899999997655443 11                          678889999999 99994443332222 


Q ss_pred             ChHHHHhhc
Q 024647          144 NVSVDAVFQ  152 (265)
Q Consensus       144 ~~~~~~~~~  152 (265)
                      ...+.+++.
T Consensus       170 ~~~~~~~l~  178 (215)
T 4dzr_A          170 ADEVARLFA  178 (215)
T ss_dssp             HHHHHHHTG
T ss_pred             HHHHHHHHH
Confidence            344444444

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.52  E-value=5.8e-14  Score=113.69  Aligned_cols=106  Identities=17%  Similarity=0.116  Sum_probs=82.6

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC------CCceEEecCCccchh
Q 024647           21 EELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL------PNIRYELTSPAMSIA   89 (265)
Q Consensus        21 ~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~   89 (265)
                      +.+...+....  .++.+|||+|||+|..+..+++.+   .+|+++|+|+.+++.+++.      .++.+..       +
T Consensus        63 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~-------~  135 (215)
T 2yxe_A           63 IHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIV-------G  135 (215)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEE-------S
T ss_pred             HHHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEE-------C
Confidence            45555555443  466899999999999999999887   6899999999999988752      5677777       4


Q ss_pred             hhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           90 ELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        90 d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      |+......+++||+|++..++|++.     +++.++|+ |||.+++....
T Consensus       136 d~~~~~~~~~~fD~v~~~~~~~~~~-----~~~~~~L~-pgG~lv~~~~~  179 (215)
T 2yxe_A          136 DGTLGYEPLAPYDRIYTTAAGPKIP-----EPLIRQLK-DGGKLLMPVGR  179 (215)
T ss_dssp             CGGGCCGGGCCEEEEEESSBBSSCC-----HHHHHTEE-EEEEEEEEESS
T ss_pred             CcccCCCCCCCeeEEEECCchHHHH-----HHHHHHcC-CCcEEEEEECC
Confidence            4433222356899999999999875     48899999 99999986654

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.52  E-value=1e-13  Score=115.23  Aligned_cols=112  Identities=21%  Similarity=0.313  Sum_probs=87.7

Q ss_pred             hCCCCcHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhc---CCcEEEEcCCHHHHHHHHcC-------CCceEEec
Q 024647           15 TRPNYPEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGI---FENVIGTETSPKQIEFATKL-------PNIRYELT   82 (265)
Q Consensus        15 ~rp~y~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~   82 (265)
                      ..+.|+.... .+....  .++.+|||+|||+|.++..+++.   ..+|+++|+|+.+++.+++.       .++.+.. 
T Consensus        77 ~~~~~~~~~~-~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~-  154 (258)
T 2pwy_A           77 ATPTYPKDAS-AMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHL-  154 (258)
T ss_dssp             SCCCCHHHHH-HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEE-
T ss_pred             cccccchHHH-HHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEE-
Confidence            4455655543 343332  56789999999999999999988   46899999999999988752       4566766 


Q ss_pred             CCccchhhhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           83 SPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        83 ~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                            +|+.+.++++++||+|+++    +.++..+++++.++|+ |||.+++..+.
T Consensus       155 ------~d~~~~~~~~~~~D~v~~~----~~~~~~~l~~~~~~L~-~gG~l~~~~~~  200 (258)
T 2pwy_A          155 ------GKLEEAELEEAAYDGVALD----LMEPWKVLEKAALALK-PDRFLVAYLPN  200 (258)
T ss_dssp             ------SCGGGCCCCTTCEEEEEEE----SSCGGGGHHHHHHHEE-EEEEEEEEESC
T ss_pred             ------CchhhcCCCCCCcCEEEEC----CcCHHHHHHHHHHhCC-CCCEEEEEeCC
Confidence                  5666666677899999983    4477799999999999 99999987765

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.52  E-value=1.4e-14  Score=118.56  Aligned_cols=98  Identities=17%  Similarity=0.159  Sum_probs=72.1

Q ss_pred             CCCCCeEEEEcCCcchhHHHHHhc--CCcEEEEcCC-HHHHHHH---Hc------CCCceEEecCCccchhhhhhccCC-
Q 024647           31 TTNHELAWDVGTGSGQAAASLSGI--FENVIGTETS-PKQIEFA---TK------LPNIRYELTSPAMSIAELEQNVAA-   97 (265)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s-~~~~~~a---~~------~~~~~~~~~~~~~~~~d~~~~~~~-   97 (265)
                      ..++.+|||||||+|.++..+++.  ..+|+|+|+| +.|++.|   ++      .+++.+..       +|++.++.. 
T Consensus        22 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~-------~d~~~l~~~~   94 (225)
T 3p2e_A           22 GQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVI-------AAAESLPFEL   94 (225)
T ss_dssp             TTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEEC-------CBTTBCCGGG
T ss_pred             CCCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEE-------cCHHHhhhhc
Confidence            456789999999999999999954  4579999999 7887776   43      25677777       555655421 


Q ss_pred             CCceeEEEecccc-----ccC-ChhHHHHHHHHHhcCCCcEEEEE
Q 024647           98 QSTVDLVTIAQAM-----HWF-DLPQFYNQVKWVLKKPNGVIATW  136 (265)
Q Consensus        98 ~~~~Dlv~~~~~~-----~~~-~~~~~l~~~~~~Lk~pgG~l~~~  136 (265)
                      .+.+|.|.+++.+     |+. +...+++++.|+|| |||.+++.
T Consensus        95 ~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~Lk-pGG~l~i~  138 (225)
T 3p2e_A           95 KNIADSISILFPWGTLLEYVIKPNRDILSNVADLAK-KEAHFEFV  138 (225)
T ss_dssp             TTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEE-EEEEEEEE
T ss_pred             cCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcC-CCcEEEEE
Confidence            2456666665532     222 45679999999999 99999883

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.51  E-value=4.9e-14  Score=121.17  Aligned_cols=105  Identities=19%  Similarity=0.181  Sum_probs=83.8

Q ss_pred             HHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCc---EEEEcCCHHHHHHHHcC------CCceEEecCCccchhh
Q 024647           22 ELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFEN---VIGTETSPKQIEFATKL------PNIRYELTSPAMSIAE   90 (265)
Q Consensus        22 ~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d   90 (265)
                      .+...+....  .++.+|||+|||+|.++..+++.+++   |+|+|+|+.+++.|++.      .++.+..       +|
T Consensus        62 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~-------~d  134 (317)
T 1dl5_A           62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVC-------GD  134 (317)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEE-------SC
T ss_pred             HHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEE-------CC
Confidence            5555655543  46789999999999999999988765   99999999999988752      4677777       55


Q ss_pred             hhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           91 LEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        91 ~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +.+...++++||+|++..++|++.     +++.++|| |||.+++....
T Consensus       135 ~~~~~~~~~~fD~Iv~~~~~~~~~-----~~~~~~Lk-pgG~lvi~~~~  177 (317)
T 1dl5_A          135 GYYGVPEFSPYDVIFVTVGVDEVP-----ETWFTQLK-EGGRVIVPINL  177 (317)
T ss_dssp             GGGCCGGGCCEEEEEECSBBSCCC-----HHHHHHEE-EEEEEEEEBCB
T ss_pred             hhhccccCCCeEEEEEcCCHHHHH-----HHHHHhcC-CCcEEEEEECC
Confidence            555433457899999999999876     57889999 99999986543

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.50  E-value=1.1e-13  Score=108.72  Aligned_cols=108  Identities=16%  Similarity=0.117  Sum_probs=86.5

Q ss_pred             CCcHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC------CCceEEecCCccchh
Q 024647           18 NYPEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL------PNIRYELTSPAMSIA   89 (265)
Q Consensus        18 ~y~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~   89 (265)
                      ..++.+.+.+....  .++.+|||+|||+|.++..+++...+++|+|+|+.+++.+++.      +++.+..       +
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~-------~   90 (183)
T 2yxd_A           18 ITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIK-------G   90 (183)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEE-------S
T ss_pred             cCHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEE-------C
Confidence            34677777776654  4667999999999999999999777899999999999988752      4677777       5


Q ss_pred             hhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           90 ELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        90 d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      |+.+ ++++++||+|+++..   -+...+++++.++   |||.+++..+.
T Consensus        91 d~~~-~~~~~~~D~i~~~~~---~~~~~~l~~~~~~---~gG~l~~~~~~  133 (183)
T 2yxd_A           91 RAED-VLDKLEFNKAFIGGT---KNIEKIIEILDKK---KINHIVANTIV  133 (183)
T ss_dssp             CHHH-HGGGCCCSEEEECSC---SCHHHHHHHHHHT---TCCEEEEEESC
T ss_pred             Cccc-cccCCCCcEEEECCc---ccHHHHHHHHhhC---CCCEEEEEecc
Confidence            5555 445578999999887   5677899999998   59999987754

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.50  E-value=1.4e-13  Score=114.35  Aligned_cols=111  Identities=17%  Similarity=0.245  Sum_probs=86.3

Q ss_pred             hCCCCcHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhc---CCcEEEEcCCHHHHHHHHcC------CC-ceEEec
Q 024647           15 TRPNYPEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGI---FENVIGTETSPKQIEFATKL------PN-IRYELT   82 (265)
Q Consensus        15 ~rp~y~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~------~~-~~~~~~   82 (265)
                      ..+.|+.... .+....  .++.+|||+|||+|.++..+++.   ..+|+++|+|+.+++.|++.      ++ +.+.. 
T Consensus        74 ~~~~~~~~~~-~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~-  151 (255)
T 3mb5_A           74 PQIVHPKDAA-LIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKL-  151 (255)
T ss_dssp             SCCCCHHHHH-HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEEC-
T ss_pred             cccccHhHHH-HHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEE-
Confidence            3445655554 444333  46789999999999999999988   46899999999999998752      34 77777 


Q ss_pred             CCccchhhhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           83 SPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        83 ~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                            +|+.+. +++++||+|+++    ..++..+++++.++|+ |||.+++..+.
T Consensus       152 ------~d~~~~-~~~~~~D~v~~~----~~~~~~~l~~~~~~L~-~gG~l~~~~~~  196 (255)
T 3mb5_A          152 ------KDIYEG-IEEENVDHVILD----LPQPERVVEHAAKALK-PGGFFVAYTPC  196 (255)
T ss_dssp             ------SCGGGC-CCCCSEEEEEEC----SSCGGGGHHHHHHHEE-EEEEEEEEESS
T ss_pred             ------Cchhhc-cCCCCcCEEEEC----CCCHHHHHHHHHHHcC-CCCEEEEEECC
Confidence                  555544 567789999984    3477789999999999 99999987754

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.50  E-value=7.4e-14  Score=116.36  Aligned_cols=107  Identities=18%  Similarity=0.163  Sum_probs=84.2

Q ss_pred             HHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC---CC--ceEEecCCccchhhhhhccC
Q 024647           22 ELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL---PN--IRYELTSPAMSIAELEQNVA   96 (265)
Q Consensus        22 ~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---~~--~~~~~~~~~~~~~d~~~~~~   96 (265)
                      ..++++.....++.+|||+|||+|.++..+++.+++|+|+|+|+.+++.+++.   .+  +.+..       +|+... +
T Consensus       109 ~~~~~l~~~~~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~-------~d~~~~-~  180 (254)
T 2nxc_A          109 LALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLE-------GSLEAA-L  180 (254)
T ss_dssp             HHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEE-------SCHHHH-G
T ss_pred             HHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCcEEEEE-------CChhhc-C
Confidence            34555655567778999999999999999999888999999999999988752   12  56666       444442 3


Q ss_pred             CCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           97 AQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        97 ~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      ++++||+|+++...|+  ...++.++.++|+ |||.+++....
T Consensus       181 ~~~~fD~Vv~n~~~~~--~~~~l~~~~~~Lk-pgG~lils~~~  220 (254)
T 2nxc_A          181 PFGPFDLLVANLYAEL--HAALAPRYREALV-PGGRALLTGIL  220 (254)
T ss_dssp             GGCCEEEEEEECCHHH--HHHHHHHHHHHEE-EEEEEEEEEEE
T ss_pred             cCCCCCEEEECCcHHH--HHHHHHHHHHHcC-CCCEEEEEeec
Confidence            4578999999865553  4679999999999 99999986654

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.50  E-value=6.9e-14  Score=122.70  Aligned_cols=96  Identities=19%  Similarity=0.223  Sum_probs=80.1

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA  109 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~  109 (265)
                      .+..+|||||||+|.++..++++++  +++++|+ +.+++.+++.+++++..       +|+.+ +.+.+  |+|++..+
T Consensus       202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~-------~d~~~-~~p~~--D~v~~~~v  270 (368)
T 3reo_A          202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAFSGVEHLG-------GDMFD-GVPKG--DAIFIKWI  270 (368)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEE-------CCTTT-CCCCC--SEEEEESC
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhcCCCEEEe-------cCCCC-CCCCC--CEEEEech
Confidence            3457899999999999999999876  5899999 99999998778888888       55554 45543  99999999


Q ss_pred             cccC-Ch--hHHHHHHHHHhcCCCcEEEEEecC
Q 024647          110 MHWF-DL--PQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       110 ~~~~-~~--~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +|+. +.  .+++++++++|+ |||.|++....
T Consensus       271 lh~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~  302 (368)
T 3reo_A          271 CHDWSDEHCLKLLKNCYAALP-DHGKVIVAEYI  302 (368)
T ss_dssp             GGGBCHHHHHHHHHHHHHHSC-TTCEEEEEECC
T ss_pred             hhcCCHHHHHHHHHHHHHHcC-CCCEEEEEEec
Confidence            9866 43  378999999999 99999987664

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.50  E-value=3.8e-14  Score=124.49  Aligned_cols=96  Identities=23%  Similarity=0.287  Sum_probs=80.7

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA  109 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~  109 (265)
                      ++..+|||||||+|..+..++++++  +++++|+ +.|++.+++.+++.+..       +|+.+ +++.  ||+|++..+
T Consensus       208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~v~~~~-------~d~~~-~~~~--~D~v~~~~~  276 (372)
T 1fp1_D          208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPLSGIEHVG-------GDMFA-SVPQ--GDAMILKAV  276 (372)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEE-------CCTTT-CCCC--EEEEEEESS
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhcCCCEEEe-------CCccc-CCCC--CCEEEEecc
Confidence            4567999999999999999999876  4778899 99999998777888888       55554 4443  999999999


Q ss_pred             cccC-Chh--HHHHHHHHHhcCCCcEEEEEecC
Q 024647          110 MHWF-DLP--QFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       110 ~~~~-~~~--~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +|++ |..  .+++++.++|+ |||.+++....
T Consensus       277 lh~~~d~~~~~~l~~~~~~L~-pgG~l~i~e~~  308 (372)
T 1fp1_D          277 CHNWSDEKCIEFLSNCHKALS-PNGKVIIVEFI  308 (372)
T ss_dssp             GGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEEE
T ss_pred             cccCCHHHHHHHHHHHHHhcC-CCCEEEEEEec
Confidence            9987 555  89999999999 99999986543

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.50  E-value=6.7e-14  Score=121.93  Aligned_cols=95  Identities=21%  Similarity=0.248  Sum_probs=78.2

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCCCCceeE
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAAQSTVDL  103 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dl  103 (265)
                      .++.+|||||||+|.++..+++.+. +|+|+|+|+ |++.|++.       .++.+..       +|++++++++++||+
T Consensus        65 ~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~-------~d~~~~~~~~~~fD~  136 (349)
T 3q7e_A           65 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIK-------GKVEEVELPVEKVDI  136 (349)
T ss_dssp             HTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEE-------SCTTTCCCSSSCEEE
T ss_pred             CCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEE-------CcHHHccCCCCceEE
Confidence            4668999999999999999999865 899999995 99888752       2377777       667777778889999


Q ss_pred             EEecccc---ccC-ChhHHHHHHHHHhcCCCcEEEE
Q 024647          104 VTIAQAM---HWF-DLPQFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus       104 v~~~~~~---~~~-~~~~~l~~~~~~Lk~pgG~l~~  135 (265)
                      |++....   ++. +...++.++.++|| |||.++.
T Consensus       137 Iis~~~~~~l~~~~~~~~~l~~~~r~Lk-pgG~li~  171 (349)
T 3q7e_A          137 IISEWMGYCLFYESMLNTVLHARDKWLA-PDGLIFP  171 (349)
T ss_dssp             EEECCCBBTBTBTCCHHHHHHHHHHHEE-EEEEEES
T ss_pred             EEEccccccccCchhHHHHHHHHHHhCC-CCCEEcc
Confidence            9997643   333 67789999999999 9999874

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.49  E-value=2.4e-14  Score=120.55  Aligned_cols=95  Identities=13%  Similarity=-0.016  Sum_probs=73.6

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC--C------CceEE--ecCCccchhhhhhccCCCCce
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL--P------NIRYE--LTSPAMSIAELEQNVAAQSTV  101 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~--~------~~~~~--~~~~~~~~~d~~~~~~~~~~~  101 (265)
                      .++.+|||+|||+|.++..++++ .+|+|||+++ |+..+++.  .      ++.+.  +       +|+..++  +++|
T Consensus        81 ~~g~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~-------~D~~~l~--~~~f  149 (276)
T 2wa2_A           81 ELKGTVVDLGCGRGSWSYYAASQ-PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSK-------VDVTKME--PFQA  149 (276)
T ss_dssp             CCCEEEEEESCTTCHHHHHHHTS-TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECS-------CCGGGCC--CCCC
T ss_pred             CCCCEEEEeccCCCHHHHHHHHc-CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEecc-------CcHhhCC--CCCc
Confidence            46789999999999999999998 8999999999 65444321  2      56666  5       5666654  6799


Q ss_pred             eEEEeccccccC-C----hh---HHHHHHHHHhcCCCc--EEEEEecC
Q 024647          102 DLVTIAQAMHWF-D----LP---QFYNQVKWVLKKPNG--VIATWCYT  139 (265)
Q Consensus       102 Dlv~~~~~~~~~-~----~~---~~l~~~~~~Lk~pgG--~l~~~~~~  139 (265)
                      |+|+|..+ ++. +    ..   .+++++.++|+ |||  .|++-.+.
T Consensus       150 D~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~Lk-pGG~~~~v~~~~~  195 (276)
T 2wa2_A          150 DTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLE-YNQGCGFCVKVLN  195 (276)
T ss_dssp             SEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHH-HSTTCEEEEEESC
T ss_pred             CEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhc-cCCCcEEEEEeCC
Confidence            99999877 443 2    22   37899999999 999  99886665

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.49  E-value=1e-13  Score=115.70  Aligned_cols=98  Identities=17%  Similarity=0.162  Sum_probs=77.4

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhcc--CCCCcee
Q 024647           33 NHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNV--AAQSTVD  102 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~--~~~~~~D  102 (265)
                      ++.+|||+|||+|.++..+++++. +|+|+|+++.+++.|++.       .++.+..       +|+.++.  +++++||
T Consensus        49 ~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~-------~D~~~~~~~~~~~~fD  121 (259)
T 3lpm_A           49 RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIE-------YDLKKITDLIPKERAD  121 (259)
T ss_dssp             SCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEEC-------SCGGGGGGTSCTTCEE
T ss_pred             CCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEE-------CcHHHhhhhhccCCcc
Confidence            678999999999999999999877 899999999999998752       2477777       5555543  3478999


Q ss_pred             EEEeccccccC---------------------ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          103 LVTIAQAMHWF---------------------DLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       103 lv~~~~~~~~~---------------------~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      +|+++..++..                     +...+++.+.++|+ |||.+++...
T Consensus       122 ~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~  177 (259)
T 3lpm_A          122 IVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLK-QGGKANFVHR  177 (259)
T ss_dssp             EEEECCCC-----------------------HHHHHHHHHHHHHEE-EEEEEEEEEC
T ss_pred             EEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHcc-CCcEEEEEEc
Confidence            99997654322                     23569999999999 9999998553

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.49  E-value=9.4e-14  Score=113.18  Aligned_cols=100  Identities=12%  Similarity=0.149  Sum_probs=77.1

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhc---CCcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhh-ccC-C--
Q 024647           32 TNHELAWDVGTGSGQAAASLSGI---FENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQ-NVA-A--   97 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~-~~~-~--   97 (265)
                      .++.+|||+|||+|..+..+++.   ..+|+++|+++.|++.|++.       .++++..++       +.+ ++. .  
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d-------~~~~l~~~~~~  129 (221)
T 3u81_A           57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGA-------SQDLIPQLKKK  129 (221)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESC-------HHHHGGGTTTT
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECC-------HHHHHHHHHHh
Confidence            35688999999999999999985   45899999999999998752       247787744       332 221 1  


Q ss_pred             --CCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecCC
Q 024647           98 --QSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTV  140 (265)
Q Consensus        98 --~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~  140 (265)
                        .++||+|++....++. +...++..+ ++|+ |||++++.+...
T Consensus       130 ~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~Lk-pgG~lv~~~~~~  173 (221)
T 3u81_A          130 YDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLR-KGTVLLADNVIV  173 (221)
T ss_dssp             SCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCC-TTCEEEESCCCC
T ss_pred             cCCCceEEEEEcCCcccchHHHHHHHhc-cccC-CCeEEEEeCCCC
Confidence              2689999998877665 555677777 9999 999999865543

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.49  E-value=1.1e-13  Score=121.56  Aligned_cols=119  Identities=14%  Similarity=0.152  Sum_probs=86.3

Q ss_pred             HHHHhhCC--CCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC---------CCceEEecCCccchhhh
Q 024647           25 KFITSKTT--NHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL---------PNIRYELTSPAMSIAEL   91 (265)
Q Consensus        25 ~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~---------~~~~~~~~~~~~~~~d~   91 (265)
                      ..+....+  ++.+|||+|||+|.++..+++.+  .+|+|+|+|+.|++.+++.         .++.+..       +|+
T Consensus       212 ~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~-------~D~  284 (375)
T 4dcm_A          212 RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMI-------NNA  284 (375)
T ss_dssp             HHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEE-------CST
T ss_pred             HHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEe-------chh
Confidence            34444443  34799999999999999999985  5899999999999988752         1356666       444


Q ss_pred             hhccCCCCceeEEEeccccccC----C--hhHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHhhc
Q 024647           92 EQNVAAQSTVDLVTIAQAMHWF----D--LPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQ  152 (265)
Q Consensus        92 ~~~~~~~~~~Dlv~~~~~~~~~----~--~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~~  152 (265)
                      .+ ++++++||+|+++..+|+.    +  ...+++++.++|+ |||.+++...........+.+.|.
T Consensus       285 ~~-~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~iv~n~~~~~~~~l~~~fg  349 (375)
T 4dcm_A          285 LS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLK-INGELYIVANRHLDYFHKLKKIFG  349 (375)
T ss_dssp             TT-TCCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEE-EEEEEEEEEETTSCHHHHHHHHHS
T ss_pred             hc-cCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCC-CCcEEEEEEECCcCHHHHHHHhcC
Confidence            44 3467799999999998853    1  1368999999999 999999877654443344444443

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.49  E-value=1.4e-13  Score=116.26  Aligned_cols=104  Identities=13%  Similarity=0.113  Sum_probs=83.2

Q ss_pred             HHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCc-EEEEcCCHHHHHHHHcC------C-CceEEecCCccchhhhhhcc
Q 024647           24 FKFITSKTTNHELAWDVGTGSGQAAASLSGIFEN-VIGTETSPKQIEFATKL------P-NIRYELTSPAMSIAELEQNV   95 (265)
Q Consensus        24 ~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~-v~~vD~s~~~~~~a~~~------~-~~~~~~~~~~~~~~d~~~~~   95 (265)
                      ...+.....++.+|||+|||+|.++..+++.++. |+|+|+|+.|++.|++.      . ++.+..       +|+.++.
T Consensus       116 ~~~l~~~~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~-------~D~~~~~  188 (278)
T 2frn_A          116 RVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYN-------MDNRDFP  188 (278)
T ss_dssp             HHHHHHHCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEEC-------SCTTTCC
T ss_pred             HHHHHHhCCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEE-------CCHHHhc
Confidence            3445555677889999999999999999999875 99999999999988752      2 266666       6666665


Q ss_pred             CCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           96 AAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        96 ~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      . +++||+|+++..   .+...++.++.++|+ |||.+++....
T Consensus       189 ~-~~~fD~Vi~~~p---~~~~~~l~~~~~~Lk-pgG~l~~~~~~  227 (278)
T 2frn_A          189 G-ENIADRILMGYV---VRTHEFIPKALSIAK-DGAIIHYHNTV  227 (278)
T ss_dssp             C-CSCEEEEEECCC---SSGGGGHHHHHHHEE-EEEEEEEEEEE
T ss_pred             c-cCCccEEEECCc---hhHHHHHHHHHHHCC-CCeEEEEEEee
Confidence            4 678999999643   245789999999999 99999986664

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.49  E-value=1.2e-13  Score=113.35  Aligned_cols=100  Identities=18%  Similarity=0.087  Sum_probs=74.0

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHH----HHHcCCCceEEecCCccchhhhhhccCCCCceeEE
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIE----FATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLV  104 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~----~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv  104 (265)
                      .++.+|||+|||+|.++..+++..   .+|+|+|+|+.|++    .++...++.+...++    .+...++..+++||+|
T Consensus        76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~----~~~~~~~~~~~~~D~V  151 (233)
T 2ipx_A           76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDA----RHPHKYRMLIAMVDVI  151 (233)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCT----TCGGGGGGGCCCEEEE
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEccc----CChhhhcccCCcEEEE
Confidence            467899999999999999999874   57999999987654    444457888887544    1211234456789999


Q ss_pred             EeccccccCCh-hHHHHHHHHHhcCCCcEEEEEec
Q 024647          105 TIAQAMHWFDL-PQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       105 ~~~~~~~~~~~-~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      ++...  ..+. ..++.++.++|+ |||.+++...
T Consensus       152 ~~~~~--~~~~~~~~~~~~~~~Lk-pgG~l~i~~~  183 (233)
T 2ipx_A          152 FADVA--QPDQTRIVALNAHTFLR-NGGHFVISIK  183 (233)
T ss_dssp             EECCC--CTTHHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred             EEcCC--CccHHHHHHHHHHHHcC-CCeEEEEEEc
Confidence            99655  2222 346889999999 9999998543

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.49  E-value=3e-14  Score=119.34  Aligned_cols=95  Identities=9%  Similarity=-0.052  Sum_probs=73.0

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc--CC------CceEE--ecCCccchhhhhhccCCCCce
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK--LP------NIRYE--LTSPAMSIAELEQNVAAQSTV  101 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~--~~------~~~~~--~~~~~~~~~d~~~~~~~~~~~  101 (265)
                      .++.+|||+|||+|.++..++++ .+|+|||+++ |+..+++  ..      ++.+.  +       +|+..++  +++|
T Consensus        73 ~~g~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~-------~D~~~l~--~~~f  141 (265)
T 2oxt_A           73 ELTGRVVDLGCGRGGWSYYAASR-PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSR-------VDIHTLP--VERT  141 (265)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHTS-TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECS-------CCTTTSC--CCCC
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHc-CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecc-------cCHhHCC--CCCC
Confidence            56789999999999999999988 8999999999 6443332  12      56666  5       5666653  6799


Q ss_pred             eEEEeccccccC-Ch----h---HHHHHHHHHhcCCCc--EEEEEecC
Q 024647          102 DLVTIAQAMHWF-DL----P---QFYNQVKWVLKKPNG--VIATWCYT  139 (265)
Q Consensus       102 Dlv~~~~~~~~~-~~----~---~~l~~~~~~Lk~pgG--~l~~~~~~  139 (265)
                      |+|+|..+ +.. ++    .   .+++++.++|+ |||  .|++-.+.
T Consensus       142 D~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~Lk-pGG~~~fv~kv~~  187 (265)
T 2oxt_A          142 DVIMCDVG-ESSPKWSVESERTIKILELLEKWKV-KNPSADFVVKVLC  187 (265)
T ss_dssp             SEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHH-HCTTCEEEEEESC
T ss_pred             cEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhc-cCCCeEEEEEeCC
Confidence            99999877 443 22    2   37899999999 999  99886665

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.49  E-value=1.4e-13  Score=120.99  Aligned_cols=103  Identities=21%  Similarity=0.211  Sum_probs=82.0

Q ss_pred             HHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhh
Q 024647           23 LFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELE   92 (265)
Q Consensus        23 l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~   92 (265)
                      ..+.+....  .++.+|||||||+|.++..++++++ +|+|+|+| .|++.|++.       .++.++.       +|++
T Consensus        51 ~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~-------~d~~  122 (376)
T 3r0q_C           51 YFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIE-------GSVE  122 (376)
T ss_dssp             HHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEE-------SCGG
T ss_pred             HHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEE-------Cchh
Confidence            344444332  4678999999999999999999987 89999999 999988752       2367777       6777


Q ss_pred             hccCCCCceeEEEeccccccC----ChhHHHHHHHHHhcCCCcEEEE
Q 024647           93 QNVAAQSTVDLVTIAQAMHWF----DLPQFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus        93 ~~~~~~~~~Dlv~~~~~~~~~----~~~~~l~~~~~~Lk~pgG~l~~  135 (265)
                      +++++ ++||+|++....|.+    +...++.++.++|+ |||.+++
T Consensus       123 ~~~~~-~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~Lk-pgG~li~  167 (376)
T 3r0q_C          123 DISLP-EKVDVIISEWMGYFLLRESMFDSVISARDRWLK-PTGVMYP  167 (376)
T ss_dssp             GCCCS-SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEE-EEEEEES
T ss_pred             hcCcC-CcceEEEEcChhhcccchHHHHHHHHHHHhhCC-CCeEEEE
Confidence            77665 899999997766654    35679999999999 9999976

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.48  E-value=1.4e-13  Score=117.72  Aligned_cols=101  Identities=19%  Similarity=0.180  Sum_probs=77.5

Q ss_pred             CCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC----------CCceEEecCCccchhhhhhccC--
Q 024647           31 TTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL----------PNIRYELTSPAMSIAELEQNVA--   96 (265)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~~~~d~~~~~~--   96 (265)
                      .+++.+|||||||+|.+++.++++.  .+|+++|+|+.+++.+++.          +++++..       +|+.....  
T Consensus        93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~-------~D~~~~~~~~  165 (304)
T 3bwc_A           93 HPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRV-------GDGLAFVRQT  165 (304)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE-------SCHHHHHHSS
T ss_pred             CCCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEE-------CcHHHHHHhc
Confidence            3566899999999999999999874  4799999999999988752          3566766       55555432  


Q ss_pred             CCCceeEEEeccccccC-Ch----hHHHHHHHHHhcCCCcEEEEEecC
Q 024647           97 AQSTVDLVTIAQAMHWF-DL----PQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        97 ~~~~~Dlv~~~~~~~~~-~~----~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      ++++||+|++....++. +.    ..+++++.++|+ |||++++....
T Consensus       166 ~~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~Lk-pgG~lv~~~~~  212 (304)
T 3bwc_A          166 PDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILK-PDGICCNQGES  212 (304)
T ss_dssp             CTTCEEEEEEECC---------CCHHHHHHHHHHEE-EEEEEEEEECC
T ss_pred             cCCceeEEEECCCCccccchhhhHHHHHHHHHHhcC-CCcEEEEecCC
Confidence            46789999998766653 22    589999999999 99999987543

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.48  E-value=2.3e-13  Score=114.68  Aligned_cols=113  Identities=21%  Similarity=0.285  Sum_probs=86.9

Q ss_pred             CCCCcHHHHHHHHhh-CCCCCeEEEEcCCcchhHHHHHhc---CCcEEEEcCCHHHHHHHHcC---------CCceEEec
Q 024647           16 RPNYPEELFKFITSK-TTNHELAWDVGTGSGQAAASLSGI---FENVIGTETSPKQIEFATKL---------PNIRYELT   82 (265)
Q Consensus        16 rp~y~~~l~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~---------~~~~~~~~   82 (265)
                      .+.||......+... ..++.+|||+|||+|.++..+++.   ..+|+++|+++.+++.|++.         .++.+.. 
T Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~-  159 (280)
T 1i9g_A           81 QVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVV-  159 (280)
T ss_dssp             CCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEEC-
T ss_pred             eeecHHHHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEE-
Confidence            345555554333322 356789999999999999999986   46899999999999988742         3566666 


Q ss_pred             CCccchhhhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecCC
Q 024647           83 SPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTV  140 (265)
Q Consensus        83 ~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~~  140 (265)
                            +|+.+.++++++||+|+++    ..++..+++++.++|+ |||.+++..+..
T Consensus       160 ------~d~~~~~~~~~~~D~v~~~----~~~~~~~l~~~~~~L~-pgG~l~~~~~~~  206 (280)
T 1i9g_A          160 ------SDLADSELPDGSVDRAVLD----MLAPWEVLDAVSRLLV-AGGVLMVYVATV  206 (280)
T ss_dssp             ------SCGGGCCCCTTCEEEEEEE----SSCGGGGHHHHHHHEE-EEEEEEEEESSH
T ss_pred             ------CchHhcCCCCCceeEEEEC----CcCHHHHHHHHHHhCC-CCCEEEEEeCCH
Confidence                  6666666667899999984    2377799999999999 999999987653

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.48  E-value=1.4e-13  Score=120.78  Aligned_cols=105  Identities=16%  Similarity=0.170  Sum_probs=83.3

Q ss_pred             HHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHc-------CCCceEEecCCccchhhhh
Q 024647           24 FKFITSKT--TNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATK-------LPNIRYELTSPAMSIAELE   92 (265)
Q Consensus        24 ~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~-------~~~~~~~~~~~~~~~~d~~   92 (265)
                      ...+....  .+..+|||||||+|.++..++++++  +++++|+ +.+++.+++       ..++.+..       +|+.
T Consensus       191 ~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~-------~d~~  262 (369)
T 3gwz_A          191 AGQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILP-------GDFF  262 (369)
T ss_dssp             HHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEE-------CCTT
T ss_pred             HHHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEec-------cCCC
Confidence            33444433  4568999999999999999999875  6999999 999998875       24688888       4444


Q ss_pred             hccCCCCceeEEEeccccccCChh---HHHHHHHHHhcCCCcEEEEEecC
Q 024647           93 QNVAAQSTVDLVTIAQAMHWFDLP---QFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        93 ~~~~~~~~~Dlv~~~~~~~~~~~~---~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                       .+.+. +||+|++..++|+++.+   ++++++.++|+ |||.+++....
T Consensus       263 -~~~p~-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~-pgG~l~i~e~~  309 (369)
T 3gwz_A          263 -ETIPD-GADVYLIKHVLHDWDDDDVVRILRRIATAMK-PDSRLLVIDNL  309 (369)
T ss_dssp             -TCCCS-SCSEEEEESCGGGSCHHHHHHHHHHHHTTCC-TTCEEEEEEEB
T ss_pred             -CCCCC-CceEEEhhhhhccCCHHHHHHHHHHHHHHcC-CCCEEEEEEec
Confidence             23444 89999999999988433   69999999999 99999986654

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.48  E-value=6.6e-14  Score=114.35  Aligned_cols=103  Identities=18%  Similarity=0.160  Sum_probs=79.9

Q ss_pred             HHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCC-------cEEEEcCCHHHHHHHHcC-----------CCceEEecCC
Q 024647           23 LFKFITSKTTNHELAWDVGTGSGQAAASLSGIFE-------NVIGTETSPKQIEFATKL-----------PNIRYELTSP   84 (265)
Q Consensus        23 l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-------~v~~vD~s~~~~~~a~~~-----------~~~~~~~~~~   84 (265)
                      +++.+.....++.+|||+|||+|..+..+++.+.       +|+++|+++.+++.+++.           .++.+..   
T Consensus        70 ~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~---  146 (227)
T 2pbf_A           70 SLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIH---  146 (227)
T ss_dssp             HHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEE---
T ss_pred             HHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEE---
Confidence            3444433446778999999999999999998865       899999999999988752           3677777   


Q ss_pred             ccchhhhhhcc----CCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647           85 AMSIAELEQNV----AAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        85 ~~~~~d~~~~~----~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                          +|+....    ...++||+|++...++++     ++++.++|+ |||.+++...
T Consensus       147 ----~d~~~~~~~~~~~~~~fD~I~~~~~~~~~-----~~~~~~~Lk-pgG~lv~~~~  194 (227)
T 2pbf_A          147 ----KNIYQVNEEEKKELGLFDAIHVGASASEL-----PEILVDLLA-ENGKLIIPIE  194 (227)
T ss_dssp             ----CCGGGCCHHHHHHHCCEEEEEECSBBSSC-----CHHHHHHEE-EEEEEEEEEE
T ss_pred             ----CChHhcccccCccCCCcCEEEECCchHHH-----HHHHHHhcC-CCcEEEEEEc
Confidence                4444432    345689999999888764     578899999 9999988654

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.48  E-value=8.8e-14  Score=121.29  Aligned_cols=96  Identities=20%  Similarity=0.266  Sum_probs=80.8

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA  109 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~  109 (265)
                      .+..+|||||||+|..+..++++++  +++++|+ +.|++.+++.+++.+..       +|+.+ +++  .||+|++..+
T Consensus       187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~-------~d~~~-~~p--~~D~v~~~~~  255 (352)
T 1fp2_A          187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGSNNLTYVG-------GDMFT-SIP--NADAVLLKYI  255 (352)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCBTTEEEEE-------CCTTT-CCC--CCSEEEEESC
T ss_pred             ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccCCCcEEEe-------ccccC-CCC--CccEEEeehh
Confidence            4568999999999999999998865  6999999 99999998777788887       55543 344  3999999999


Q ss_pred             cccC-Chh--HHHHHHHHHhcCC---CcEEEEEecC
Q 024647          110 MHWF-DLP--QFYNQVKWVLKKP---NGVIATWCYT  139 (265)
Q Consensus       110 ~~~~-~~~--~~l~~~~~~Lk~p---gG~l~~~~~~  139 (265)
                      +|++ |..  .+++++.++|+ |   ||.+++....
T Consensus       256 lh~~~d~~~~~~l~~~~~~L~-p~~~gG~l~i~e~~  290 (352)
T 1fp2_A          256 LHNWTDKDCLRILKKCKEAVT-NDGKRGKVTIIDMV  290 (352)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHS-GGGCCCEEEEEECE
T ss_pred             hccCCHHHHHHHHHHHHHhCC-CCCCCcEEEEEEee
Confidence            9977 555  89999999999 9   9999886654

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.48  E-value=1.2e-13  Score=114.84  Aligned_cols=95  Identities=15%  Similarity=0.112  Sum_probs=77.5

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhccCC---CCce
Q 024647           33 NHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQNVAA---QSTV  101 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~~~~---~~~~  101 (265)
                      ++.+|||||||+|..+..++..+  .+|+++|+|+.+++.+++      ..|+.+..       +|+++++..   .++|
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~-------~d~~~~~~~~~~~~~f  152 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALW-------GRAEVLAREAGHREAY  152 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEE-------CCHHHHTTSTTTTTCE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEE-------CcHHHhhcccccCCCc
Confidence            56799999999999999999874  479999999999998875      34678887       566666532   4789


Q ss_pred             eEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          102 DLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       102 Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      |+|++...   .+...+++.+.++|+ |||.+++...
T Consensus       153 D~I~s~a~---~~~~~ll~~~~~~Lk-pgG~l~~~~g  185 (249)
T 3g89_A          153 ARAVARAV---APLCVLSELLLPFLE-VGGAAVAMKG  185 (249)
T ss_dssp             EEEEEESS---CCHHHHHHHHGGGEE-EEEEEEEEEC
T ss_pred             eEEEECCc---CCHHHHHHHHHHHcC-CCeEEEEEeC
Confidence            99998643   266889999999999 9999987653

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.48  E-value=5.6e-14  Score=112.14  Aligned_cols=121  Identities=11%  Similarity=0.115  Sum_probs=85.3

Q ss_pred             HHHHHHHHhh--CCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhcc---
Q 024647           21 EELFKFITSK--TTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNV---   95 (265)
Q Consensus        21 ~~l~~~l~~~--~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---   95 (265)
                      -++.+.+...  .+++.+|||+|||+|.++..++++..+|+|+|+++..     ..+++.+.++++       .+..   
T Consensus        11 ~KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~-----~~~~v~~~~~D~-------~~~~~~~   78 (191)
T 3dou_A           11 FKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEME-----EIAGVRFIRCDI-------FKETIFD   78 (191)
T ss_dssp             HHHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCC-----CCTTCEEEECCT-------TSSSHHH
T ss_pred             HHHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHcCCcEEEEeccccc-----cCCCeEEEEccc-------cCHHHHH
Confidence            3666666655  3577899999999999999999998899999999852     346888888554       3221   


Q ss_pred             -----CC---CCceeEEEeccccccC-----Ch-------hHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHhhcccc
Q 024647           96 -----AA---QSTVDLVTIAQAMHWF-----DL-------PQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQPFY  155 (265)
Q Consensus        96 -----~~---~~~~Dlv~~~~~~~~~-----~~-------~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~~~~~  155 (265)
                           +.   .++||+|+++.+....     |.       ..+++.+.++|| |||.|++..+..+.. ..+...++..+
T Consensus        79 ~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~Lk-pGG~lv~k~~~~~~~-~~~~~~l~~~F  156 (191)
T 3dou_A           79 DIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLR-NGGNVLLKQFQGDMT-NDFIAIWRKNF  156 (191)
T ss_dssp             HHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEEEEECSTHH-HHHHHHHGGGE
T ss_pred             HHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHcc-CCCEEEEEEcCCCCH-HHHHHHHHHhc
Confidence                 11   1389999997643322     22       367889999999 999999877654432 34444444433

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.47  E-value=1e-13  Score=119.83  Aligned_cols=96  Identities=15%  Similarity=0.089  Sum_probs=79.3

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCCCCceeE
Q 024647           33 NHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAAQSTVDL  103 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dl  103 (265)
                      +..+|||||||+|.++..+++.++  +++++|+ +.+++.+++.       .++.+..       +|+. .+.+. +||+
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~-------~d~~-~~~p~-~~D~  238 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVV-------GSFF-DPLPA-GAGG  238 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEE-------CCTT-SCCCC-SCSE
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEec-------CCCC-CCCCC-CCcE
Confidence            357899999999999999998775  5999999 9999988752       5688888       4544 23344 8999


Q ss_pred             EEeccccccC-Ch--hHHHHHHHHHhcCCCcEEEEEecC
Q 024647          104 VTIAQAMHWF-DL--PQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       104 v~~~~~~~~~-~~--~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      |++.+++|++ |.  .++++++.++|+ |||.+++....
T Consensus       239 v~~~~vlh~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~  276 (332)
T 3i53_A          239 YVLSAVLHDWDDLSAVAILRRCAEAAG-SGGVVLVIEAV  276 (332)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHHT-TTCEEEEEECC
T ss_pred             EEEehhhccCCHHHHHHHHHHHHHhcC-CCCEEEEEeec
Confidence            9999999987 43  689999999999 99999987664

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.47  E-value=2.1e-13  Score=117.88  Aligned_cols=98  Identities=15%  Similarity=0.206  Sum_probs=80.2

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCCCCcee
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAAQSTVD  102 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~D  102 (265)
                      .+..+|||+|||+|..+..+++.+  .+++++|++ .+++.+++.       .++.+..       +|+.+.+++. .||
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~-------~d~~~~~~~~-~~D  234 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIA-------GSAFEVDYGN-DYD  234 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEE-------SCTTTSCCCS-CEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEe-------cccccCCCCC-CCc
Confidence            456899999999999999999885  479999999 999988752       2477777       5555555444 499


Q ss_pred             EEEeccccccCC-h--hHHHHHHHHHhcCCCcEEEEEecC
Q 024647          103 LVTIAQAMHWFD-L--PQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       103 lv~~~~~~~~~~-~--~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +|++..++|+++ .  ..+++++.++|+ |||.+++....
T Consensus       235 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~  273 (335)
T 2r3s_A          235 LVLLPNFLHHFDVATCEQLLRKIKTALA-VEGKVIVFDFI  273 (335)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEECC
T ss_pred             EEEEcchhccCCHHHHHHHHHHHHHhCC-CCcEEEEEeec
Confidence            999999999873 3  489999999999 99999887665

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.47  E-value=1.4e-13  Score=112.90  Aligned_cols=114  Identities=16%  Similarity=0.169  Sum_probs=86.5

Q ss_pred             hCCCCcHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC-------CCceEEecC
Q 024647           15 TRPNYPEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL-------PNIRYELTS   83 (265)
Q Consensus        15 ~rp~y~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~   83 (265)
                      ..|...+.....+....  .++.+|||+|||+|..+..+++..  .+|+++|+++.+++.|++.       .++.+...+
T Consensus        34 ~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d  113 (233)
T 2gpy_A           34 QVPIMDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGD  113 (233)
T ss_dssp             TCCCCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSC
T ss_pred             CCCCcCHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECC
Confidence            45555666666655443  356799999999999999999884  6899999999999988752       357777744


Q ss_pred             Cccchhhhhhc-cC--CCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647           84 PAMSIAELEQN-VA--AQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        84 ~~~~~~d~~~~-~~--~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                             +... +.  .+++||+|++....+  +...+++++.++|+ |||.+++.+.
T Consensus       114 -------~~~~~~~~~~~~~fD~I~~~~~~~--~~~~~l~~~~~~L~-pgG~lv~~~~  161 (233)
T 2gpy_A          114 -------ALQLGEKLELYPLFDVLFIDAAKG--QYRRFFDMYSPMVR-PGGLILSDNV  161 (233)
T ss_dssp             -------GGGSHHHHTTSCCEEEEEEEGGGS--CHHHHHHHHGGGEE-EEEEEEEETT
T ss_pred             -------HHHHHHhcccCCCccEEEECCCHH--HHHHHHHHHHHHcC-CCeEEEEEcC
Confidence                   3332 21  156899999977644  67889999999999 9999998643

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.47  E-value=2.2e-13  Score=119.33  Aligned_cols=96  Identities=16%  Similarity=0.223  Sum_probs=80.6

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA  109 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~  109 (265)
                      .+..+|||||||+|..+..++++++  +++++|+ +.+++.+++.+++.+..       +|+.+ +.+.+  |+|++..+
T Consensus       200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~-------~D~~~-~~p~~--D~v~~~~v  268 (364)
T 3p9c_A          200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQFPGVTHVG-------GDMFK-EVPSG--DTILMKWI  268 (364)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEE-------CCTTT-CCCCC--SEEEEESC
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhcCCeEEEe-------CCcCC-CCCCC--CEEEehHH
Confidence            3567999999999999999999876  5899999 99999998778888888       56555 55544  99999999


Q ss_pred             cccC-C--hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          110 MHWF-D--LPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       110 ~~~~-~--~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +|.. +  ...++++++++|+ |||.|++....
T Consensus       269 lh~~~d~~~~~~L~~~~~~L~-pgG~l~i~e~~  300 (364)
T 3p9c_A          269 LHDWSDQHCATLLKNCYDALP-AHGKVVLVQCI  300 (364)
T ss_dssp             GGGSCHHHHHHHHHHHHHHSC-TTCEEEEEECC
T ss_pred             hccCCHHHHHHHHHHHHHHcC-CCCEEEEEEec
Confidence            9866 3  3478999999999 99999987664

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.47  E-value=2.1e-13  Score=114.84  Aligned_cols=110  Identities=17%  Similarity=0.165  Sum_probs=84.2

Q ss_pred             cHHHHHHHHhhC-CCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC------CCceEEecCCccchhh
Q 024647           20 PEELFKFITSKT-TNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAE   90 (265)
Q Consensus        20 ~~~l~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d   90 (265)
                      .+.+++.+.... .++.+|||+|||+|..+..+++..  .+|+|+|+|+.+++.+++.      +++.+..       +|
T Consensus        95 te~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~-------~d  167 (276)
T 2b3t_A           95 TECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQ-------SD  167 (276)
T ss_dssp             HHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEEC-------CS
T ss_pred             HHHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEE-------cc
Confidence            566777777665 456799999999999999999764  5799999999999988752      4677777       44


Q ss_pred             hhhccCCCCceeEEEeccccccC--------------------------ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647           91 LEQNVAAQSTVDLVTIAQAMHWF--------------------------DLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        91 ~~~~~~~~~~~Dlv~~~~~~~~~--------------------------~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      +... .++++||+|+++...++.                          +...+++++.++|+ |||.+++...
T Consensus       168 ~~~~-~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lk-pgG~l~~~~~  239 (276)
T 2b3t_A          168 WFSA-LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALV-SGGFLLLEHG  239 (276)
T ss_dssp             TTGG-GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEE-EEEEEEEECC
T ss_pred             hhhh-cccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcC-CCCEEEEEEC
Confidence            4443 346789999998544332                          12568899999999 9999998643

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.47  E-value=2.6e-13  Score=110.81  Aligned_cols=117  Identities=22%  Similarity=0.177  Sum_probs=81.5

Q ss_pred             HhhhCCCCcHHHHHHHHh---h--CCCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHc----CCCceE
Q 024647           12 YAETRPNYPEELFKFITS---K--TTNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATK----LPNIRY   79 (265)
Q Consensus        12 Y~~~rp~y~~~l~~~l~~---~--~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~----~~~~~~   79 (265)
                      |...+|.++ ++...+..   .  ..++.+|||+|||+|.++..+++..   .+|+|+|+|+.|++.+++    .+++.+
T Consensus        48 ~~~~~p~~~-~~~~~i~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~  126 (227)
T 1g8a_A           48 YRIWNPNRS-KLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVP  126 (227)
T ss_dssp             EEECCTTTC-HHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEE
T ss_pred             EEEeCCCch-hHHHHHHhhHHhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEE
Confidence            333477654 44455532   2  2466899999999999999999873   589999999988877653    357888


Q ss_pred             EecCCccchhhhhhccCCCCceeEEEeccccccCChh-HHHHHHHHHhcCCCcEEEEE
Q 024647           80 ELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLP-QFYNQVKWVLKKPNGVIATW  136 (265)
Q Consensus        80 ~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~-~~l~~~~~~Lk~pgG~l~~~  136 (265)
                      ...++.    +........++||+|++...  ..+.. .++.++.++|+ |||.+++.
T Consensus       127 ~~~d~~----~~~~~~~~~~~~D~v~~~~~--~~~~~~~~l~~~~~~Lk-pgG~l~~~  177 (227)
T 1g8a_A          127 ILGDAT----KPEEYRALVPKVDVIFEDVA--QPTQAKILIDNAEVYLK-RGGYGMIA  177 (227)
T ss_dssp             EECCTT----CGGGGTTTCCCEEEEEECCC--STTHHHHHHHHHHHHEE-EEEEEEEE
T ss_pred             EEccCC----CcchhhcccCCceEEEECCC--CHhHHHHHHHHHHHhcC-CCCEEEEE
Confidence            875441    11111112358999998755  22333 45999999999 99999876

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.46  E-value=2.3e-13  Score=116.16  Aligned_cols=114  Identities=11%  Similarity=0.167  Sum_probs=85.2

Q ss_pred             CCcHHHHHHHHh---hCCC--CCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC------CCceEEecCC
Q 024647           18 NYPEELFKFITS---KTTN--HELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL------PNIRYELTSP   84 (265)
Q Consensus        18 ~y~~~l~~~l~~---~~~~--~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~   84 (265)
                      .|.+.++..+..   ..+.  +.+|||||||+|.+++.+++++  .+|++||+++.|++.|++.      ++++++.   
T Consensus        69 ~Y~e~m~~~~~~l~~~~p~p~~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~---  145 (317)
T 3gjy_A           69 EYMRWIATGARAFIDAHQDASKLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRV---  145 (317)
T ss_dssp             HHHHHHHHHHHHHHHHHSCGGGCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEE---
T ss_pred             HHHHHHHHHHHhhcccCCCCCCCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEE---
Confidence            355666666654   2333  3489999999999999999854  4799999999999999862      3566666   


Q ss_pred             ccchhhhhhc--cCCCCceeEEEeccccccC-----ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           85 AMSIAELEQN--VAAQSTVDLVTIAQAMHWF-----DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        85 ~~~~~d~~~~--~~~~~~~Dlv~~~~~~~~~-----~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                          +|+..+  ..++++||+|++....++.     ....+++++.++|+ |||++++....
T Consensus       146 ----~Da~~~l~~~~~~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~Lk-pgGvlv~~~~~  202 (317)
T 3gjy_A          146 ----DDARMVAESFTPASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLA-PGGLYVANCGD  202 (317)
T ss_dssp             ----SCHHHHHHTCCTTCEEEEEECCSTTSCCCGGGSBHHHHHHHHHHEE-EEEEEEEEEEE
T ss_pred             ----CcHHHHHhhccCCCCCEEEECCCCccccchhhhHHHHHHHHHHhcC-CCcEEEEEecC
Confidence                554443  2346789999997655442     23679999999999 99999987654

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.46  E-value=2.6e-13  Score=110.70  Aligned_cols=103  Identities=17%  Similarity=0.230  Sum_probs=78.8

Q ss_pred             HHHHHhhCCCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHc-----------CCCceEEecCCccchh
Q 024647           24 FKFITSKTTNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATK-----------LPNIRYELTSPAMSIA   89 (265)
Q Consensus        24 ~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~-----------~~~~~~~~~~~~~~~~   89 (265)
                      ++.+.....++.+|||+|||+|..+..+++..   .+|+++|+|+.+++.+++           ..++.+..       +
T Consensus        68 l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~-------~  140 (226)
T 1i1n_A           68 LELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVV-------G  140 (226)
T ss_dssp             HHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEE-------S
T ss_pred             HHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEE-------C
Confidence            33333334567899999999999999999874   489999999999998864           13677777       4


Q ss_pred             hhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           90 ELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        90 d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      |+.......++||+|++...++.+     ++++.++|+ |||.+++....
T Consensus       141 d~~~~~~~~~~fD~i~~~~~~~~~-----~~~~~~~Lk-pgG~lv~~~~~  184 (226)
T 1i1n_A          141 DGRMGYAEEAPYDAIHVGAAAPVV-----PQALIDQLK-PGGRLILPVGP  184 (226)
T ss_dssp             CGGGCCGGGCCEEEEEECSBBSSC-----CHHHHHTEE-EEEEEEEEESC
T ss_pred             CcccCcccCCCcCEEEECCchHHH-----HHHHHHhcC-CCcEEEEEEec
Confidence            444444446789999998877643     468899999 99999986553

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.46  E-value=2.8e-13  Score=111.29  Aligned_cols=113  Identities=18%  Similarity=0.195  Sum_probs=84.8

Q ss_pred             hCCCCcHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhc--CCcEEEEcCCHHHHHHHHcC-------CCceEEecC
Q 024647           15 TRPNYPEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGI--FENVIGTETSPKQIEFATKL-------PNIRYELTS   83 (265)
Q Consensus        15 ~rp~y~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~   83 (265)
                      ..|...+.....+....  .++.+|||+|||+|..+..+++.  ..+|+++|+++.+++.|++.       .++.+..++
T Consensus        51 ~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d  130 (232)
T 3ntv_A           51 EVPIVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGN  130 (232)
T ss_dssp             TCCCCCHHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESC
T ss_pred             CCCCcCHHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECC
Confidence            44555566665555433  46689999999999999999984  46899999999999998752       368888844


Q ss_pred             Cccchhhhhhc-c-CCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647           84 PAMSIAELEQN-V-AAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        84 ~~~~~~d~~~~-~-~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                             +.+. + ..+++||+|++...  .-+...+++++.++|+ |||.|++.+
T Consensus       131 -------~~~~~~~~~~~~fD~V~~~~~--~~~~~~~l~~~~~~Lk-pgG~lv~d~  176 (232)
T 3ntv_A          131 -------ALEQFENVNDKVYDMIFIDAA--KAQSKKFFEIYTPLLK-HQGLVITDN  176 (232)
T ss_dssp             -------GGGCHHHHTTSCEEEEEEETT--SSSHHHHHHHHGGGEE-EEEEEEEEC
T ss_pred             -------HHHHHHhhccCCccEEEEcCc--HHHHHHHHHHHHHhcC-CCeEEEEee
Confidence                   4332 2 22578999997643  2256789999999999 999998833

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.46  E-value=2e-13  Score=119.59  Aligned_cols=98  Identities=17%  Similarity=0.155  Sum_probs=79.7

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhc--cCCCCc
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQN--VAAQST  100 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~--~~~~~~  100 (265)
                      ....+|||||||+|.++..++++++  +++++|+ +.|++.|++.       .++.+..       +|+.+.  +++ ++
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~-------~d~~~~~~~~p-~~  248 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHG-------ANLLDRDVPFP-TG  248 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEE-------CCCCSSSCCCC-CC
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEE-------ccccccCCCCC-CC
Confidence            3557899999999999999999765  6999999 9999988752       3577777       555543  344 68


Q ss_pred             eeEEEeccccccC-Ch--hHHHHHHHHHhcCCCcEEEEEecC
Q 024647          101 VDLVTIAQAMHWF-DL--PQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       101 ~Dlv~~~~~~~~~-~~--~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      ||+|++..++|.+ +.  ..+++++.++|+ |||.|++....
T Consensus       249 ~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~  289 (363)
T 3dp7_A          249 FDAVWMSQFLDCFSEEEVISILTRVAQSIG-KDSKVYIMETL  289 (363)
T ss_dssp             CSEEEEESCSTTSCHHHHHHHHHHHHHHCC-TTCEEEEEECC
T ss_pred             cCEEEEechhhhCCHHHHHHHHHHHHHhcC-CCcEEEEEeec
Confidence            9999999999876 33  378999999999 99999987654

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.46  E-value=6.8e-14  Score=114.42  Aligned_cols=102  Identities=12%  Similarity=0.130  Sum_probs=78.3

Q ss_pred             HHHHHhhCCCCCeEEEEcCCcchhHHHHHhcC--------CcEEEEcCCHHHHHHHHc-----------CCCceEEecCC
Q 024647           24 FKFITSKTTNHELAWDVGTGSGQAAASLSGIF--------ENVIGTETSPKQIEFATK-----------LPNIRYELTSP   84 (265)
Q Consensus        24 ~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~--------~~v~~vD~s~~~~~~a~~-----------~~~~~~~~~~~   84 (265)
                      ++.+.....++.+|||+|||+|..+..+++..        .+|+++|+++.+++.+++           ..++.+..   
T Consensus        75 ~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~---  151 (227)
T 1r18_A           75 LEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE---  151 (227)
T ss_dssp             HHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE---
T ss_pred             HHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEE---
Confidence            33333334567899999999999999998853        389999999999998875           24677777   


Q ss_pred             ccchhhhhhccCCC-CceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           85 AMSIAELEQNVAAQ-STVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        85 ~~~~~d~~~~~~~~-~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                          +|+.+ +++. ++||+|++...+|++.     +++.+.|+ |||.+++....
T Consensus       152 ----~d~~~-~~~~~~~fD~I~~~~~~~~~~-----~~~~~~Lk-pgG~lvi~~~~  196 (227)
T 1r18_A          152 ----GDGRK-GYPPNAPYNAIHVGAAAPDTP-----TELINQLA-SGGRLIVPVGP  196 (227)
T ss_dssp             ----SCGGG-CCGGGCSEEEEEECSCBSSCC-----HHHHHTEE-EEEEEEEEESC
T ss_pred             ----CCccc-CCCcCCCccEEEECCchHHHH-----HHHHHHhc-CCCEEEEEEec
Confidence                44444 2333 7899999999888754     78899999 99999986543

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.46  E-value=3.1e-13  Score=113.87  Aligned_cols=101  Identities=17%  Similarity=0.220  Sum_probs=78.7

Q ss_pred             CCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC----------CCceEEecCCccchhhhhh-ccCC
Q 024647           31 TTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL----------PNIRYELTSPAMSIAELEQ-NVAA   97 (265)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~~~~d~~~-~~~~   97 (265)
                      .+.+.+|||||||+|.+++.++++.  .+|++||+++.+++.|++.          +++++..+++       .. ++..
T Consensus        73 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~-------~~~l~~~  145 (275)
T 1iy9_A           73 HPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDG-------FMHIAKS  145 (275)
T ss_dssp             SSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCS-------HHHHHTC
T ss_pred             CCCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcH-------HHHHhhC
Confidence            3567899999999999999999873  4799999999999998751          3567777443       33 2334


Q ss_pred             CCceeEEEeccccccCC-----hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           98 QSTVDLVTIAQAMHWFD-----LPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        98 ~~~~Dlv~~~~~~~~~~-----~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +++||+|++....++..     ...+++++.++|+ |||++++....
T Consensus       146 ~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~-pgG~lv~~~~~  191 (275)
T 1iy9_A          146 ENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALK-EDGIFVAQTDN  191 (275)
T ss_dssp             CSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEE-EEEEEEEECCC
T ss_pred             CCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcC-CCcEEEEEcCC
Confidence            57899999977655432     2679999999999 99999987543

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.46  E-value=1.2e-13  Score=120.01  Aligned_cols=119  Identities=12%  Similarity=0.086  Sum_probs=87.3

Q ss_pred             HHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC-----CCceEEecCCccchhhhhh
Q 024647           23 LFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL-----PNIRYELTSPAMSIAELEQ   93 (265)
Q Consensus        23 l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~d~~~   93 (265)
                      ..+.+....  .++.+|||+|||+|.++..+++.++  +|+++|+|+.|++.+++.     .+..+..       +|+..
T Consensus       184 ~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~-------~d~~~  256 (343)
T 2pjd_A          184 GSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFA-------SNVFS  256 (343)
T ss_dssp             HHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEE-------CSTTT
T ss_pred             HHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEE-------ccccc
Confidence            344444443  2457899999999999999999874  799999999999988752     2244544       44443


Q ss_pred             ccCCCCceeEEEeccccccC------ChhHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHhh
Q 024647           94 NVAAQSTVDLVTIAQAMHWF------DLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVF  151 (265)
Q Consensus        94 ~~~~~~~~Dlv~~~~~~~~~------~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~  151 (265)
                      .  .+++||+|+++..+|+.      +...+++++.++|+ |||.+++...........+.+.+
T Consensus       257 ~--~~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~~l~~~f  317 (343)
T 2pjd_A          257 E--VKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLN-SGGELRIVANAFLPYPDVLDETF  317 (343)
T ss_dssp             T--CCSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEE-EEEEEEEEEETTSSHHHHHHHHH
T ss_pred             c--ccCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCC-CCcEEEEEEcCCCCcHHHHHHhc
Confidence            3  36789999999999862      35689999999999 99999987665333333444443

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.46  E-value=2.7e-13  Score=112.51  Aligned_cols=114  Identities=23%  Similarity=0.296  Sum_probs=81.5

Q ss_pred             CCCcHH----HHHHHHhhCC--CCCeEEEEcCCcchhHHHHHhc----CCcEEEEcCCHHHHHHHHcC---C---C----
Q 024647           17 PNYPEE----LFKFITSKTT--NHELAWDVGTGSGQAAASLSGI----FENVIGTETSPKQIEFATKL---P---N----   76 (265)
Q Consensus        17 p~y~~~----l~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~---~---~----   76 (265)
                      |.++..    +++.+.....  ++.+|||+|||+|.++..+++.    ..+|+|+|+|+.|++.|++.   .   +    
T Consensus        29 ~~~~~~la~~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~  108 (250)
T 1o9g_A           29 PAFPVRLATEIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTAR  108 (250)
T ss_dssp             CCCCHHHHHHHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhcccccc
Confidence            444444    4444444432  4578999999999999999887    35799999999999998741   1   1    


Q ss_pred             -------------------------ce-------------EEecCCccchhhhhhccC-----CCCceeEEEeccccccC
Q 024647           77 -------------------------IR-------------YELTSPAMSIAELEQNVA-----AQSTVDLVTIAQAMHWF  113 (265)
Q Consensus        77 -------------------------~~-------------~~~~~~~~~~~d~~~~~~-----~~~~~Dlv~~~~~~~~~  113 (265)
                                               +.             +..       +|+.+...     ...+||+|+++..++..
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-------~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~  181 (250)
T 1o9g_A          109 ELERREQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRT-------ADVFDPRALSAVLAGSAPDVVLTDLPYGER  181 (250)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEE-------CCTTCGGGHHHHHTTCCCSEEEEECCGGGS
T ss_pred             chhhhhhhhhcccccchhhhhhhhhhhhhccccccccccceee-------cccccccccccccCCCCceEEEeCCCeecc
Confidence                                     44             666       44433211     33489999998866654


Q ss_pred             -C---------hhHHHHHHHHHhcCCCcEEEEEec
Q 024647          114 -D---------LPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       114 -~---------~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                       +         ...+++++.++|+ |||.+++...
T Consensus       182 ~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~  215 (250)
T 1o9g_A          182 THWEGQVPGQPVAGLLRSLASALP-AHAVIAVTDR  215 (250)
T ss_dssp             SSSSSCCCHHHHHHHHHHHHHHSC-TTCEEEEEES
T ss_pred             ccccccccccHHHHHHHHHHHhcC-CCcEEEEeCc
Confidence             3         2379999999999 9999998443

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.46  E-value=2.8e-13  Score=117.09  Aligned_cols=116  Identities=12%  Similarity=0.112  Sum_probs=87.8

Q ss_pred             HHhhhCCCCcHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC-------CCceE
Q 024647           11 QYAETRPNYPEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL-------PNIRY   79 (265)
Q Consensus        11 ~Y~~~rp~y~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~-------~~~~~   79 (265)
                      .|.... .+.......+....  .+ .+|||+|||+|..+..++++++  +++++|+ +.+++.+++.       .++.+
T Consensus       145 ~f~~~m-~~~~~~~~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~  221 (334)
T 2ip2_A          145 RFLLAM-KASNLAFHEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSL  221 (334)
T ss_dssp             HHHHHH-GGGHHHHHHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEE
T ss_pred             HHHHHH-HHHHHHHHHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEE
Confidence            344444 44444455554443  34 8999999999999999998864  6999999 9999988752       46888


Q ss_pred             EecCCccchhhhhhccCCCCceeEEEeccccccC-Chh--HHHHHHHHHhcCCCcEEEEEecC
Q 024647           80 ELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLP--QFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        80 ~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~--~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      ..       +|+.+ +.+ ++||+|++..++|.+ +..  .+++++.++|+ |||.+++....
T Consensus       222 ~~-------~d~~~-~~~-~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~  274 (334)
T 2ip2_A          222 VG-------GDMLQ-EVP-SNGDIYLLSRIIGDLDEAASLRLLGNCREAMA-GDGRVVVIERT  274 (334)
T ss_dssp             EE-------SCTTT-CCC-SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSC-TTCEEEEEECC
T ss_pred             ec-------CCCCC-CCC-CCCCEEEEchhccCCCHHHHHHHHHHHHHhcC-CCCEEEEEEec
Confidence            87       45444 334 579999999999866 444  89999999999 99999987654

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.46  E-value=1.8e-13  Score=115.23  Aligned_cols=95  Identities=16%  Similarity=0.151  Sum_probs=78.4

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhc---CCcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCCCCce
Q 024647           32 TNHELAWDVGTGSGQAAASLSGI---FENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAAQSTV  101 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~  101 (265)
                      .++.+|||+|||+|..+..+++.   ..+|+++|+++.+++.+++.       .++.+..       +|+.+ ++++++|
T Consensus       109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~-------~d~~~-~~~~~~f  180 (275)
T 1yb2_A          109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSR-------SDIAD-FISDQMY  180 (275)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEEC-------SCTTT-CCCSCCE
T ss_pred             CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEE-------Cchhc-cCcCCCc
Confidence            46689999999999999999987   56899999999999988752       3566666       55555 4566789


Q ss_pred             eEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          102 DLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       102 Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      |+|++    |..++..+++++.++|+ |||.+++.++.
T Consensus       181 D~Vi~----~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~  213 (275)
T 1yb2_A          181 DAVIA----DIPDPWNHVQKIASMMK-PGSVATFYLPN  213 (275)
T ss_dssp             EEEEE----CCSCGGGSHHHHHHTEE-EEEEEEEEESS
T ss_pred             cEEEE----cCcCHHHHHHHHHHHcC-CCCEEEEEeCC
Confidence            99998    44477899999999999 99999987764

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.45  E-value=1.8e-13  Score=109.02  Aligned_cols=113  Identities=13%  Similarity=0.089  Sum_probs=77.9

Q ss_pred             HHHHHHHhh--CCCCCeEEEEcCCcchhHHHHHhcC-----------CcEEEEcCCHHHHHHHHcCCCceEE-ecCCccc
Q 024647           22 ELFKFITSK--TTNHELAWDVGTGSGQAAASLSGIF-----------ENVIGTETSPKQIEFATKLPNIRYE-LTSPAMS   87 (265)
Q Consensus        22 ~l~~~l~~~--~~~~~~vlDvGcG~G~~~~~l~~~~-----------~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~   87 (265)
                      ++.+.....  .+++.+|||+|||+|.++..++++.           .+|+|+|+|+.+     ...++.+. ..+... 
T Consensus         9 kl~~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----~~~~~~~~~~~d~~~-   82 (196)
T 2nyu_A            9 KLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----PLEGATFLCPADVTD-   82 (196)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----CCTTCEEECSCCTTS-
T ss_pred             HHHHHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----cCCCCeEEEeccCCC-
Confidence            344444333  3567899999999999999999874           579999999842     23567777 644311 


Q ss_pred             hhhhhh---ccCCCCceeEEEecccccc----C-Ch-------hHHHHHHHHHhcCCCcEEEEEecCCCC
Q 024647           88 IAELEQ---NVAAQSTVDLVTIAQAMHW----F-DL-------PQFYNQVKWVLKKPNGVIATWCYTVPE  142 (265)
Q Consensus        88 ~~d~~~---~~~~~~~~Dlv~~~~~~~~----~-~~-------~~~l~~~~~~Lk~pgG~l~~~~~~~~~  142 (265)
                       .+...   ..+++++||+|++..++|+    . +.       ..+++++.++|+ |||.+++..+....
T Consensus        83 -~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~lv~~~~~~~~  150 (196)
T 2nyu_A           83 -PRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQ-PGGTFLCKTWAGSQ  150 (196)
T ss_dssp             -HHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEEEECCSGG
T ss_pred             -HHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhc-CCCEEEEEecCCcc
Confidence             01100   0134568999999765554    2 33       478999999999 99999987765433

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.45  E-value=3.7e-13  Score=114.56  Aligned_cols=101  Identities=21%  Similarity=0.174  Sum_probs=75.7

Q ss_pred             CCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC----------CCceEEecCCccchhhhhh-ccCC
Q 024647           31 TTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL----------PNIRYELTSPAMSIAELEQ-NVAA   97 (265)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~~~~d~~~-~~~~   97 (265)
                      .+.+.+|||+|||+|.++..++++.  .+|+++|+|+.+++.+++.          +++++..       +|+.. ++..
T Consensus        88 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~-------~D~~~~l~~~  160 (296)
T 1inl_A           88 HPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVI-------ANGAEYVRKF  160 (296)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE-------SCHHHHGGGC
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEE-------CcHHHHHhhC
Confidence            3556899999999999999999874  5799999999999988752          3566666       55443 2334


Q ss_pred             CCceeEEEeccccccCC------hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           98 QSTVDLVTIAQAMHWFD------LPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        98 ~~~~Dlv~~~~~~~~~~------~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +++||+|++....+|..      ...+++++.++|+ |||++++....
T Consensus       161 ~~~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~Lk-pgG~lv~~~~~  207 (296)
T 1inl_A          161 KNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALK-EDGVFSAETED  207 (296)
T ss_dssp             SSCEEEEEEEC----------CCSHHHHHHHHHHEE-EEEEEEEECCC
T ss_pred             CCCceEEEEcCCCcccCchhhhhHHHHHHHHHHhcC-CCcEEEEEccC
Confidence            57899999876545442      2689999999999 99999987543

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.45  E-value=9.2e-14  Score=114.55  Aligned_cols=96  Identities=14%  Similarity=0.088  Sum_probs=76.4

Q ss_pred             CCCeEEEEcCCcchhHHHHHhc------CCcEEEEcCCHHHHHHHHc-CCCceEEecCCccchhhhhh---ccC-CCCce
Q 024647           33 NHELAWDVGTGSGQAAASLSGI------FENVIGTETSPKQIEFATK-LPNIRYELTSPAMSIAELEQ---NVA-AQSTV  101 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~---~~~-~~~~~  101 (265)
                      ++.+|||||||+|..+..+++.      ..+|+|||+|+.|++.|+. ..+++++.+++       .+   ++. ...+|
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~-------~~~~~l~~~~~~~f  153 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDC-------SDLTTFEHLREMAH  153 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCS-------SCSGGGGGGSSSCS
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcc-------hhHHHHHhhccCCC
Confidence            4579999999999999999987      4689999999999988864 25788888544       33   232 33479


Q ss_pred             eEEEeccccccCChhHHHHHHHH-HhcCCCcEEEEEec
Q 024647          102 DLVTIAQAMHWFDLPQFYNQVKW-VLKKPNGVIATWCY  138 (265)
Q Consensus       102 Dlv~~~~~~~~~~~~~~l~~~~~-~Lk~pgG~l~~~~~  138 (265)
                      |+|++... | .+...++.++.+ +|| |||++++.+.
T Consensus       154 D~I~~d~~-~-~~~~~~l~~~~r~~Lk-pGG~lv~~d~  188 (236)
T 2bm8_A          154 PLIFIDNA-H-ANTFNIMKWAVDHLLE-EGDYFIIEDM  188 (236)
T ss_dssp             SEEEEESS-C-SSHHHHHHHHHHHTCC-TTCEEEECSC
T ss_pred             CEEEECCc-h-HhHHHHHHHHHHhhCC-CCCEEEEEeC
Confidence            99998665 4 477889999997 999 9999998553

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.45  E-value=1.1e-13  Score=128.04  Aligned_cols=100  Identities=13%  Similarity=0.100  Sum_probs=78.7

Q ss_pred             CCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc----C--CCceEEecCCccchhhhhhc--cCCCCcee
Q 024647           31 TTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK----L--PNIRYELTSPAMSIAELEQN--VAAQSTVD  102 (265)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~----~--~~~~~~~~~~~~~~~d~~~~--~~~~~~~D  102 (265)
                      .+.+.+|||||||.|.++..|++.+++|+|||+|+.+++.|+.    .  .++++.+.       +++++  ...+++||
T Consensus        64 ~~~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~-------~~~~~~~~~~~~~fD  136 (569)
T 4azs_A           64 LGRPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPDFAAEFRVG-------RIEEVIAALEEGEFD  136 (569)
T ss_dssp             HTSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEEC-------CHHHHHHHCCTTSCS
T ss_pred             cCCCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhcCCCceEEEEC-------CHHHHhhhccCCCcc
Confidence            3566799999999999999999999999999999999998874    1  35788884       44554  24567899


Q ss_pred             EEEeccccccC-ChhH--HHHHHHHHhcCCCcEEEEEec
Q 024647          103 LVTIAQAMHWF-DLPQ--FYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       103 lv~~~~~~~~~-~~~~--~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      +|+|..++|++ |+..  .+..+.+.|+ ++|..++...
T Consensus       137 ~v~~~e~~ehv~~~~~~~~~~~~~~tl~-~~~~~~~~~~  174 (569)
T 4azs_A          137 LAIGLSVFHHIVHLHGIDEVKRLLSRLA-DVTQAVILEL  174 (569)
T ss_dssp             EEEEESCHHHHHHHHCHHHHHHHHHHHH-HHSSEEEEEC
T ss_pred             EEEECcchhcCCCHHHHHHHHHHHHHhc-cccceeeEEe
Confidence            99999999999 6653  3456777888 7876555433

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.45  E-value=2.7e-13  Score=116.38  Aligned_cols=100  Identities=19%  Similarity=0.197  Sum_probs=79.1

Q ss_pred             CCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC-----------CCceEEecCCccchhhhhh-ccC
Q 024647           31 TTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL-----------PNIRYELTSPAMSIAELEQ-NVA   96 (265)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-----------~~~~~~~~~~~~~~~d~~~-~~~   96 (265)
                      .+.+.+|||||||+|.+++.++++.  .+|++||+++.+++.|++.           +++++..       +|+.. ++.
T Consensus        75 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~-------~D~~~~l~~  147 (314)
T 1uir_A           75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVI-------DDARAYLER  147 (314)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEE-------SCHHHHHHH
T ss_pred             CCCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEE-------chHHHHHHh
Confidence            4566899999999999999999874  5799999999999988751           3566666       44444 223


Q ss_pred             CCCceeEEEecccccc---CC-----hhHHHHHHHHHhcCCCcEEEEEec
Q 024647           97 AQSTVDLVTIAQAMHW---FD-----LPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        97 ~~~~~Dlv~~~~~~~~---~~-----~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      .+++||+|++....|+   -.     ...+++++.++|+ |||.+++...
T Consensus       148 ~~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~Lk-pgG~lv~~~~  196 (314)
T 1uir_A          148 TEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLN-PGGVMGMQTG  196 (314)
T ss_dssp             CCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEE-EEEEEEEEEE
T ss_pred             cCCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcC-CCcEEEEEcc
Confidence            4678999999887776   21     3689999999999 9999998653

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.44  E-value=5.1e-13  Score=108.95  Aligned_cols=92  Identities=14%  Similarity=0.127  Sum_probs=72.6

Q ss_pred             CeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC--------CCceEEecCCccchhhhhhc-c-CCCCce
Q 024647           35 ELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL--------PNIRYELTSPAMSIAELEQN-V-AAQSTV  101 (265)
Q Consensus        35 ~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~d~~~~-~-~~~~~~  101 (265)
                      .+|||+|||+|..+..+++..   .+|+++|+|+.+++.|++.        .++.+..       +|+.+. + +++++|
T Consensus        58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~-------gda~~~l~~~~~~~f  130 (221)
T 3dr5_A           58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLL-------SRPLDVMSRLANDSY  130 (221)
T ss_dssp             CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEEC-------SCHHHHGGGSCTTCE
T ss_pred             CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEE-------cCHHHHHHHhcCCCc
Confidence            489999999999999999864   5799999999999998752        2577777       444433 2 336799


Q ss_pred             eEEEeccccccCChhHHHHHHHHHhcCCCcEEEEE
Q 024647          102 DLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATW  136 (265)
Q Consensus       102 Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~  136 (265)
                      |+|++....  -+...+++++.++|+ |||.+++-
T Consensus       131 D~V~~d~~~--~~~~~~l~~~~~~Lk-pGG~lv~d  162 (221)
T 3dr5_A          131 QLVFGQVSP--MDLKALVDAAWPLLR-RGGALVLA  162 (221)
T ss_dssp             EEEEECCCT--TTHHHHHHHHHHHEE-EEEEEEET
T ss_pred             CeEEEcCcH--HHHHHHHHHHHHHcC-CCcEEEEe
Confidence            999987432  255679999999999 99999983

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.44  E-value=4.6e-13  Score=111.09  Aligned_cols=97  Identities=13%  Similarity=0.097  Sum_probs=75.7

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhc---CCcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhh-ccC--CC
Q 024647           32 TNHELAWDVGTGSGQAAASLSGI---FENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQ-NVA--AQ   98 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~-~~~--~~   98 (265)
                      .++.+|||||||+|..+..+++.   ..+|+++|+|+.+++.|++.       .++.+..++       +.+ ++.  ..
T Consensus        62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d-------~~~~l~~~~~~  134 (248)
T 3tfw_A           62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGP-------ALQSLESLGEC  134 (248)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESC-------HHHHHHTCCSC
T ss_pred             cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcC-------HHHHHHhcCCC
Confidence            35689999999999999999988   45799999999999988752       368888844       333 222  23


Q ss_pred             CceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647           99 STVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        99 ~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      ++||+|++...  .-+...+++++.++|+ |||+|++.+.
T Consensus       135 ~~fD~V~~d~~--~~~~~~~l~~~~~~Lk-pGG~lv~~~~  171 (248)
T 3tfw_A          135 PAFDLIFIDAD--KPNNPHYLRWALRYSR-PGTLIIGDNV  171 (248)
T ss_dssp             CCCSEEEECSC--GGGHHHHHHHHHHTCC-TTCEEEEECC
T ss_pred             CCeEEEEECCc--hHHHHHHHHHHHHhcC-CCeEEEEeCC
Confidence            58999998653  1255689999999999 9999988544

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.44  E-value=3.7e-13  Score=111.47  Aligned_cols=98  Identities=18%  Similarity=0.220  Sum_probs=75.4

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHc--------------CCCceEEecCCccchhhhhh-cc
Q 024647           33 NHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATK--------------LPNIRYELTSPAMSIAELEQ-NV   95 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~--------------~~~~~~~~~~~~~~~~d~~~-~~   95 (265)
                      ++.+|||+|||+|.++..+++.++  +|+|+|+|+.|++.+++              ..|+.+..+++       .+ ++
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~-------~~~l~  121 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNA-------MKFLP  121 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCT-------TSCGG
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccH-------HHHHH
Confidence            567899999999999999999875  59999999999987753              25777877544       33 33


Q ss_pred             --CCCCceeEEEeccccccCCh---------hHHHHHHHHHhcCCCcEEEEEec
Q 024647           96 --AAQSTVDLVTIAQAMHWFDL---------PQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        96 --~~~~~~Dlv~~~~~~~~~~~---------~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                        ++.+++|.|+....-.|...         ..++.++.++|+ |||.|++.+.
T Consensus       122 ~~~~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~Lk-pgG~l~~~td  174 (246)
T 2vdv_E          122 NFFEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLK-EGGVVYTITD  174 (246)
T ss_dssp             GTSCTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEE-EEEEEEEEES
T ss_pred             HhccccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcC-CCCEEEEEec
Confidence              56789999996643333311         479999999999 9999998543

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.44  E-value=3.1e-13  Score=108.64  Aligned_cols=94  Identities=20%  Similarity=0.161  Sum_probs=76.2

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhccCCCCceeEE
Q 024647           33 NHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQNVAAQSTVDLV  104 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv  104 (265)
                      ++.+|||+|||+|..+..+++..  .+++++|+|+.+++.+++      ..++.+..       +|+.+.+ +.++||+|
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~-------~d~~~~~-~~~~~D~i  136 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQ-------SRVEEFP-SEPPFDGV  136 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEE-------CCTTTSC-CCSCEEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEe-------cchhhCC-ccCCcCEE
Confidence            46799999999999999999874  589999999999998875      24577777       5555554 45789999


Q ss_pred             EeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          105 TIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       105 ~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      +++..   .+...+++++.++|+ |||.+++...
T Consensus       137 ~~~~~---~~~~~~l~~~~~~L~-~gG~l~~~~~  166 (207)
T 1jsx_A          137 ISRAF---ASLNDMVSWCHHLPG-EQGRFYALKG  166 (207)
T ss_dssp             ECSCS---SSHHHHHHHHTTSEE-EEEEEEEEES
T ss_pred             EEecc---CCHHHHHHHHHHhcC-CCcEEEEEeC
Confidence            98542   367889999999999 9999988643

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.44  E-value=4.3e-13  Score=110.23  Aligned_cols=106  Identities=21%  Similarity=0.219  Sum_probs=81.1

Q ss_pred             cHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcC-CcEEEEcCCHHHHHHHHcC------CCceEEecCCccchhh
Q 024647           20 PEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIF-ENVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAE   90 (265)
Q Consensus        20 ~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d   90 (265)
                      .+.+...+....  .++.+|||+|||+|.++..+++.+ .+|+++|+++.+++.+++.      .++.+..       +|
T Consensus        76 ~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~-------~d  148 (235)
T 1jg1_A           76 APHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVIL-------GD  148 (235)
T ss_dssp             CHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEE-------SC
T ss_pred             cHHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE-------CC
Confidence            344555554443  466799999999999999999987 7999999999999988752      4677777       44


Q ss_pred             hhhccCCC-CceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           91 LEQNVAAQ-STVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        91 ~~~~~~~~-~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      + ..+++. .+||+|++...++++.     +++.++|+ |||.+++....
T Consensus       149 ~-~~~~~~~~~fD~Ii~~~~~~~~~-----~~~~~~L~-pgG~lvi~~~~  191 (235)
T 1jg1_A          149 G-SKGFPPKAPYDVIIVTAGAPKIP-----EPLIEQLK-IGGKLIIPVGS  191 (235)
T ss_dssp             G-GGCCGGGCCEEEEEECSBBSSCC-----HHHHHTEE-EEEEEEEEECS
T ss_pred             c-ccCCCCCCCccEEEECCcHHHHH-----HHHHHhcC-CCcEEEEEEec
Confidence            3 222333 3599999999888764     37899999 99999987664

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.44  E-value=4.7e-13  Score=116.96  Aligned_cols=97  Identities=13%  Similarity=0.174  Sum_probs=79.7

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHc------CC-CceEEecCCccchhhhhhccCCCCcee
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATK------LP-NIRYELTSPAMSIAELEQNVAAQSTVD  102 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~------~~-~~~~~~~~~~~~~~d~~~~~~~~~~~D  102 (265)
                      .+..+|||||||+|.++..++++++  +++++|+ +.+++.+++      .. ++.+..       +|+.+.++++  .|
T Consensus       189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~-------~d~~~~~~~~--~D  258 (359)
T 1x19_A          189 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIA-------VDIYKESYPE--AD  258 (359)
T ss_dssp             TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEE-------CCTTTSCCCC--CS
T ss_pred             CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEe-------CccccCCCCC--CC
Confidence            4568999999999999999999875  7999999 999998874      22 377777       5555555444  49


Q ss_pred             EEEeccccccC-C--hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          103 LVTIAQAMHWF-D--LPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       103 lv~~~~~~~~~-~--~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +|++..++|.+ +  ...+++++.++|+ |||.+++....
T Consensus       259 ~v~~~~vlh~~~d~~~~~~l~~~~~~L~-pgG~l~i~e~~  297 (359)
T 1x19_A          259 AVLFCRILYSANEQLSTIMCKKAFDAMR-SGGRLLILDMV  297 (359)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHTTCC-TTCEEEEEEEC
T ss_pred             EEEEechhccCCHHHHHHHHHHHHHhcC-CCCEEEEEecc
Confidence            99999999877 4  5789999999999 99999886654

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.43  E-value=9.7e-13  Score=114.77  Aligned_cols=113  Identities=18%  Similarity=0.124  Sum_probs=88.8

Q ss_pred             CcHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC------CCceEEecCCccc
Q 024647           19 YPEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL------PNIRYELTSPAMS   87 (265)
Q Consensus        19 y~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~   87 (265)
                      ..+.+...+....  .++.+|||+|||+|.++..++..+   .+|+|+|+|+.|++.|++.      .++.+.+      
T Consensus       187 l~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~------  260 (354)
T 3tma_A          187 LTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLR------  260 (354)
T ss_dssp             CCHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEE------
T ss_pred             cCHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEe------
Confidence            4556666665543  456789999999999999999876   6899999999999998752      2577777      


Q ss_pred             hhhhhhccCCCCceeEEEeccccccC-C--------hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           88 IAELEQNVAAQSTVDLVTIAQAMHWF-D--------LPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        88 ~~d~~~~~~~~~~~Dlv~~~~~~~~~-~--------~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                       +|+.+++.+.++||+|+++..+++. .        ...+++++.++|+ |||.+++.++.
T Consensus       261 -~D~~~~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~Lk-pgG~l~i~t~~  319 (354)
T 3tma_A          261 -ADARHLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLP-PGGRVALLTLR  319 (354)
T ss_dssp             -CCGGGGGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSC-TTCEEEEEESC
T ss_pred             -CChhhCccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcC-CCcEEEEEeCC
Confidence             6677776666789999998766543 1        2578999999999 99999997764

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.43  E-value=4.8e-13  Score=107.98  Aligned_cols=112  Identities=12%  Similarity=0.174  Sum_probs=81.4

Q ss_pred             hCCCCcHHHHHHHHhh--CCCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC-------CCceEEec
Q 024647           15 TRPNYPEELFKFITSK--TTNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL-------PNIRYELT   82 (265)
Q Consensus        15 ~rp~y~~~l~~~l~~~--~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-------~~~~~~~~   82 (265)
                      ..|...+.....+...  ..++.+|||+|||+|..+..+++..   .+|+++|+|+.+++.|++.       .++.+.. 
T Consensus        36 ~~p~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~-  114 (210)
T 3c3p_A           36 NIPIVDRQTGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQV-  114 (210)
T ss_dssp             TCCCCCHHHHHHHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEE-
T ss_pred             CCCCcCHHHHHHHHHHHHhhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEE-
Confidence            3454444444433322  2356789999999999999999874   5899999999999988752       2467777 


Q ss_pred             CCccchhhhhhc-cCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647           83 SPAMSIAELEQN-VAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        83 ~~~~~~~d~~~~-~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                            +|+.+. +..++ ||+|++...  ..+...+++++.++|+ |||.+++.+
T Consensus       115 ------~d~~~~~~~~~~-fD~v~~~~~--~~~~~~~l~~~~~~Lk-pgG~lv~~~  160 (210)
T 3c3p_A          115 ------GDPLGIAAGQRD-IDILFMDCD--VFNGADVLERMNRCLA-KNALLIAVN  160 (210)
T ss_dssp             ------SCHHHHHTTCCS-EEEEEEETT--TSCHHHHHHHHGGGEE-EEEEEEEES
T ss_pred             ------ecHHHHhccCCC-CCEEEEcCC--hhhhHHHHHHHHHhcC-CCeEEEEEC
Confidence                  444432 33345 999998732  2367889999999999 999998844

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.43  E-value=6.1e-13  Score=114.95  Aligned_cols=99  Identities=18%  Similarity=0.257  Sum_probs=76.9

Q ss_pred             CCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC----------CCceEEecCCccchhhhhhc-c-C
Q 024647           31 TTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL----------PNIRYELTSPAMSIAELEQN-V-A   96 (265)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~~~~d~~~~-~-~   96 (265)
                      .+.+.+|||||||+|.+++.++++.  .+|+++|+|+.|++.|++.          +++++..       +|+.+. + .
T Consensus       118 ~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~-------~D~~~~l~~~  190 (334)
T 1xj5_A          118 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVI-------GDGVAFLKNA  190 (334)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEE-------SCHHHHHHTS
T ss_pred             CCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEE-------CCHHHHHHhc
Confidence            3566899999999999999999874  5799999999999988752          3567776       554443 1 2


Q ss_pred             CCCceeEEEeccccccC--C---hhHHHHHHHHHhcCCCcEEEEEe
Q 024647           97 AQSTVDLVTIAQAMHWF--D---LPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        97 ~~~~~Dlv~~~~~~~~~--~---~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      ++++||+|+++...++.  +   ...+++++.++|+ |||.+++..
T Consensus       191 ~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~Lk-pgG~lv~~~  235 (334)
T 1xj5_A          191 AEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALR-PGGVVCTQA  235 (334)
T ss_dssp             CTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEE-EEEEEEEEC
T ss_pred             cCCCccEEEECCCCccCcchhhhHHHHHHHHHHhcC-CCcEEEEec
Confidence            45789999997643322  2   3689999999999 999999853

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.43  E-value=4.3e-13  Score=117.69  Aligned_cols=96  Identities=17%  Similarity=0.134  Sum_probs=78.4

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCCCCcee
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAAQSTVD  102 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~D  102 (265)
                      .++.+|||||||+|.++..+++.++  +++++|+ +.+++.+++.       .++.+..       +|+.+ +++. .||
T Consensus       181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~-------~d~~~-~~~~-~~D  250 (374)
T 1qzz_A          181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAE-------GDFFK-PLPV-TAD  250 (374)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEE-------CCTTS-CCSC-CEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEe-------CCCCC-cCCC-CCC
Confidence            4568999999999999999999864  7999999 9999988752       2688887       44433 2333 499


Q ss_pred             EEEeccccccC-Chh--HHHHHHHHHhcCCCcEEEEEec
Q 024647          103 LVTIAQAMHWF-DLP--QFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       103 lv~~~~~~~~~-~~~--~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      +|++..++|++ +..  .+++++.++|+ |||.+++...
T Consensus       251 ~v~~~~vl~~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~  288 (374)
T 1qzz_A          251 VVLLSFVLLNWSDEDALTILRGCVRALE-PGGRLLVLDR  288 (374)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEC
T ss_pred             EEEEeccccCCCHHHHHHHHHHHHHhcC-CCcEEEEEec
Confidence            99999999987 443  79999999999 9999998766

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.43  E-value=3e-13  Score=116.83  Aligned_cols=94  Identities=22%  Similarity=0.225  Sum_probs=76.0

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCCCCceeE
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAAQSTVDL  103 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dl  103 (265)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+| .|++.|++.       .++.+..       +|++++++++++||+
T Consensus        37 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~-------~d~~~~~~~~~~~D~  108 (328)
T 1g6q_1           37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLR-------GKLEDVHLPFPKVDI  108 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEE-------SCTTTSCCSSSCEEE
T ss_pred             cCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEE-------CchhhccCCCCcccE
Confidence            4567899999999999999998875 79999999 588887652       3477777       666777767789999


Q ss_pred             EEeccccc---cC-ChhHHHHHHHHHhcCCCcEEE
Q 024647          104 VTIAQAMH---WF-DLPQFYNQVKWVLKKPNGVIA  134 (265)
Q Consensus       104 v~~~~~~~---~~-~~~~~l~~~~~~Lk~pgG~l~  134 (265)
                      |++....+   +. +...++.++.++|+ |||.++
T Consensus       109 Ivs~~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~li  142 (328)
T 1g6q_1          109 IISEWMGYFLLYESMMDTVLYARDHYLV-EGGLIF  142 (328)
T ss_dssp             EEECCCBTTBSTTCCHHHHHHHHHHHEE-EEEEEE
T ss_pred             EEEeCchhhcccHHHHHHHHHHHHhhcC-CCeEEE
Confidence            99985433   22 56789999999999 999987

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.43  E-value=7.9e-13  Score=111.21  Aligned_cols=100  Identities=20%  Similarity=0.190  Sum_probs=81.7

Q ss_pred             HhhCCCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhccCCCC
Q 024647           28 TSKTTNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQNVAAQS   99 (265)
Q Consensus        28 ~~~~~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~~~~~~   99 (265)
                      .....++.+|||+|||+|.++..+++.++  +|+|+|+|+.+++.|++      ..++.+..       +|+.+.+ ..+
T Consensus       114 ~~~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~-------~d~~~~~-~~~  185 (272)
T 3a27_A          114 AFISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPIL-------ADNRDVE-LKD  185 (272)
T ss_dssp             HTSCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEE-------SCGGGCC-CTT
T ss_pred             HHhcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEE-------CChHHcC-ccC
Confidence            33456778999999999999999999865  89999999999998875      24677777       5556553 256


Q ss_pred             ceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          100 TVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       100 ~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +||+|+++...   +...++.++.+.|+ |||.+++.+..
T Consensus       186 ~~D~Vi~d~p~---~~~~~l~~~~~~Lk-pgG~l~~s~~~  221 (272)
T 3a27_A          186 VADRVIMGYVH---KTHKFLDKTFEFLK-DRGVIHYHETV  221 (272)
T ss_dssp             CEEEEEECCCS---SGGGGHHHHHHHEE-EEEEEEEEEEE
T ss_pred             CceEEEECCcc---cHHHHHHHHHHHcC-CCCEEEEEEcC
Confidence            89999998653   67789999999999 99999987664

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.43  E-value=1.5e-12  Score=107.50  Aligned_cols=109  Identities=19%  Similarity=0.232  Sum_probs=83.8

Q ss_pred             CCcHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC-------CCceEEecCCccch
Q 024647           18 NYPEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSI   88 (265)
Q Consensus        18 ~y~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~   88 (265)
                      .||.... .+....  .++.+|||+|||+|.++..+++...+|+++|+++.+++.+++.       .++.+..       
T Consensus        75 ~~~~~~~-~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~-------  146 (248)
T 2yvl_A           75 IYPKDSF-YIALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFN-------  146 (248)
T ss_dssp             CCHHHHH-HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEEC-------
T ss_pred             ccchhHH-HHHHhcCCCCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEE-------
Confidence            3444443 444443  4678999999999999999998877899999999999988752       4566666       


Q ss_pred             hhhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           89 AELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        89 ~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +|+.+...++++||+|+++    ..++..+++++.++|+ |||.+++..+.
T Consensus       147 ~d~~~~~~~~~~~D~v~~~----~~~~~~~l~~~~~~L~-~gG~l~~~~~~  192 (248)
T 2yvl_A          147 VDFKDAEVPEGIFHAAFVD----VREPWHYLEKVHKSLM-EGAPVGFLLPT  192 (248)
T ss_dssp             SCTTTSCCCTTCBSEEEEC----SSCGGGGHHHHHHHBC-TTCEEEEEESS
T ss_pred             cChhhcccCCCcccEEEEC----CcCHHHHHHHHHHHcC-CCCEEEEEeCC
Confidence            4555543256789999984    2367799999999999 99999997764

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.42  E-value=6.9e-13  Score=114.13  Aligned_cols=101  Identities=20%  Similarity=0.235  Sum_probs=77.0

Q ss_pred             CCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC----------CCceEEecCCccchhhhhhc-cCC
Q 024647           31 TTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL----------PNIRYELTSPAMSIAELEQN-VAA   97 (265)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~~~~d~~~~-~~~   97 (265)
                      .+++.+|||+|||+|.+++.++++.  .+|+++|+|+.+++.|++.          +++++..       +|+.+. +..
T Consensus       114 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~-------~D~~~~l~~~  186 (321)
T 2pt6_A          114 SKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFI-------EDASKFLENV  186 (321)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEE-------SCHHHHHHHC
T ss_pred             CCCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEE-------ccHHHHHhhc
Confidence            3566899999999999999999874  5799999999999998752          3466666       454432 223


Q ss_pred             CCceeEEEeccccccCC-----hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           98 QSTVDLVTIAQAMHWFD-----LPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        98 ~~~~Dlv~~~~~~~~~~-----~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +++||+|+++..-++-.     ...+++++.++|+ |||.+++....
T Consensus       187 ~~~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~Lk-pgG~lv~~~~~  232 (321)
T 2pt6_A          187 TNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALK-PNGYCVAQCES  232 (321)
T ss_dssp             CSCEEEEEEECCCSSSGGGGGSSHHHHHHHHHHEE-EEEEEEEEECC
T ss_pred             CCCceEEEECCcCCCCcchhhhHHHHHHHHHHhcC-CCcEEEEEcCC
Confidence            57899999876433311     1689999999999 99999987543

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.42  E-value=6.3e-13  Score=109.20  Aligned_cols=109  Identities=15%  Similarity=0.142  Sum_probs=70.9

Q ss_pred             HHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC-CCceEEe-cCCccchhhhhhccC
Q 024647           22 ELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL-PNIRYEL-TSPAMSIAELEQNVA   96 (265)
Q Consensus        22 ~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-~~~~~~~-~~~~~~~~d~~~~~~   96 (265)
                      ++.+.|....  .++.+|||||||+|.++..++++++ +|+|+|+|+.|++.+++. +.+.... .+.....  ..++  
T Consensus        24 kL~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~--~~~~--   99 (232)
T 3opn_A           24 KLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAV--LADF--   99 (232)
T ss_dssp             HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCC--GGGC--
T ss_pred             HHHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeC--HhHc--
Confidence            5555555443  2456999999999999999999985 899999999999987653 3322211 1221111  1122  


Q ss_pred             CCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647           97 AQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        97 ~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      +...+|.+.+..++.  ....+++++.++|| |||.+++..
T Consensus       100 ~~~~~d~~~~D~v~~--~l~~~l~~i~rvLk-pgG~lv~~~  137 (232)
T 3opn_A          100 EQGRPSFTSIDVSFI--SLDLILPPLYEILE-KNGEVAALI  137 (232)
T ss_dssp             CSCCCSEEEECCSSS--CGGGTHHHHHHHSC-TTCEEEEEE
T ss_pred             CcCCCCEEEEEEEhh--hHHHHHHHHHHhcc-CCCEEEEEE
Confidence            111234444333322  23789999999999 999998853

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.41  E-value=1e-12  Score=110.67  Aligned_cols=109  Identities=22%  Similarity=0.266  Sum_probs=83.3

Q ss_pred             CCCcHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhc---CCcEEEEcCCHHHHHHHHcC-------CCceEEecCC
Q 024647           17 PNYPEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGI---FENVIGTETSPKQIEFATKL-------PNIRYELTSP   84 (265)
Q Consensus        17 p~y~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~   84 (265)
                      +.||.... .+....  .++.+|||+|||+|.++..+++.   ..+|+++|+|+.+++.|++.       .++.+..   
T Consensus        95 ~~~~~~~~-~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~---  170 (277)
T 1o54_A           95 IVYPKDSS-FIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKV---  170 (277)
T ss_dssp             CCCHHHHH-HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEEC---
T ss_pred             ccCHHHHH-HHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEE---
Confidence            34554443 333332  46679999999999999999987   35799999999999988752       3566666   


Q ss_pred             ccchhhhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           85 AMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        85 ~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                          +|+.+. +++++||+|+++    ..++..+++++.++|+ |||.+++..+.
T Consensus       171 ----~d~~~~-~~~~~~D~V~~~----~~~~~~~l~~~~~~L~-pgG~l~~~~~~  215 (277)
T 1o54_A          171 ----RDISEG-FDEKDVDALFLD----VPDPWNYIDKCWEALK-GGGRFATVCPT  215 (277)
T ss_dssp             ----CCGGGC-CSCCSEEEEEEC----CSCGGGTHHHHHHHEE-EEEEEEEEESS
T ss_pred             ----CCHHHc-ccCCccCEEEEC----CcCHHHHHHHHHHHcC-CCCEEEEEeCC
Confidence                555554 466789999984    2366789999999999 99999987764

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.41  E-value=5.5e-13  Score=111.43  Aligned_cols=100  Identities=15%  Similarity=0.148  Sum_probs=76.6

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC-C---------CceEEecCCccchhhhhhc-----
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL-P---------NIRYELTSPAMSIAELEQN-----   94 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-~---------~~~~~~~~~~~~~~d~~~~-----   94 (265)
                      .++.+|||+|||+|.++..+++++  .+|+|+|+++.+++.|++. .         ++.+..       +|+.+.     
T Consensus        35 ~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~-------~D~~~~~~~~~  107 (260)
T 2ozv_A           35 DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLE-------ADVTLRAKARV  107 (260)
T ss_dssp             CSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEE-------CCTTCCHHHHH
T ss_pred             cCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEe-------CCHHHHhhhhh
Confidence            356789999999999999999987  4799999999999998752 1         256666       444443     


Q ss_pred             --cCCCCceeEEEeccccccC-------------------ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           95 --VAAQSTVDLVTIAQAMHWF-------------------DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        95 --~~~~~~~Dlv~~~~~~~~~-------------------~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                        .+++++||+|+++..++..                   +...+++.+.++|+ |||.+++....
T Consensus       108 ~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~  172 (260)
T 2ozv_A          108 EAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMV-SGGQLSLISRP  172 (260)
T ss_dssp             HTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEE-EEEEEEEEECG
T ss_pred             hhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcC-CCCEEEEEEcH
Confidence              2456789999998543322                   35689999999999 99999886543

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.40  E-value=8.3e-13  Score=111.72  Aligned_cols=101  Identities=20%  Similarity=0.241  Sum_probs=77.9

Q ss_pred             CCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC----------CCceEEecCCccchhhhhhc-cCC
Q 024647           31 TTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL----------PNIRYELTSPAMSIAELEQN-VAA   97 (265)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~~~~d~~~~-~~~   97 (265)
                      .+++.+|||+|||+|..++.++++.  .+|+++|+++.+++.+++.          +++++..       +|+.+. +..
T Consensus        76 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~-------~D~~~~l~~~  148 (283)
T 2i7c_A           76 SKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFI-------EDASKFLENV  148 (283)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEE-------SCHHHHHHHC
T ss_pred             CCCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEE-------CChHHHHHhC
Confidence            3566899999999999999999875  5799999999999998752          3566666       444432 223


Q ss_pred             CCceeEEEeccccccCCh-----hHHHHHHHHHhcCCCcEEEEEecC
Q 024647           98 QSTVDLVTIAQAMHWFDL-----PQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        98 ~~~~Dlv~~~~~~~~~~~-----~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +++||+|++....++...     ..+++++.++|+ |||.+++....
T Consensus       149 ~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~-pgG~lv~~~~~  194 (283)
T 2i7c_A          149 TNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALK-PNGYCVAQCES  194 (283)
T ss_dssp             CSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEE-EEEEEEEECCC
T ss_pred             CCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcC-CCcEEEEECCC
Confidence            578999999765554311     589999999999 99999987543

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.40  E-value=9.5e-13  Score=111.24  Aligned_cols=112  Identities=13%  Similarity=0.134  Sum_probs=81.6

Q ss_pred             cHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcC-CHHHHHHHHcCC----------------CceE
Q 024647           20 PEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFE-NVIGTET-SPKQIEFATKLP----------------NIRY   79 (265)
Q Consensus        20 ~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~-s~~~~~~a~~~~----------------~~~~   79 (265)
                      ...+.+++....  .++.+|||+|||+|.++..+++.+. +|+++|+ |+.+++.+++..                ++.+
T Consensus        64 ~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~  143 (281)
T 3bzb_A           64 ARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKV  143 (281)
T ss_dssp             HHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEE
T ss_pred             HHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEE
Confidence            345666776553  4667999999999999999998876 8999999 899999887521                3444


Q ss_pred             EecCCccchhh-hhhcc--CCCCceeEEEeccccccC-ChhHHHHHHHHHhc---C-CCcEEEE
Q 024647           80 ELTSPAMSIAE-LEQNV--AAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLK---K-PNGVIAT  135 (265)
Q Consensus        80 ~~~~~~~~~~d-~~~~~--~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk---~-pgG~l~~  135 (265)
                      .....    ++ ...+.  +++++||+|+++.++++. +...+++.+.++|+   + |||.+++
T Consensus       144 ~~~~~----~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v  203 (281)
T 3bzb_A          144 VPYRW----GDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALV  203 (281)
T ss_dssp             EECCT----TSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEE
T ss_pred             EEecC----CCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEE
Confidence            43221    11 12221  035789999998988877 78899999999998   3 2887665

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.40  E-value=9.8e-13  Score=112.32  Aligned_cols=98  Identities=17%  Similarity=0.201  Sum_probs=75.0

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC----------CCceEEecCCccchhhhhh-ccCCC
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL----------PNIRYELTSPAMSIAELEQ-NVAAQ   98 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~~~~d~~~-~~~~~   98 (265)
                      +.+.+|||||||+|.+++.++++.  .+|++||+++.+++.|++.          +++++..       +|+.+ ++..+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~-------~Da~~~l~~~~  166 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHV-------GDGFEFMKQNQ  166 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE-------SCHHHHHHTCS
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEE-------CcHHHHHhhCC
Confidence            566899999999999999999875  5799999999999988752          3566666       45443 33346


Q ss_pred             CceeEEEeccccccC-----ChhHHHHHHHHHhcCCCcEEEEEe
Q 024647           99 STVDLVTIAQAMHWF-----DLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        99 ~~~Dlv~~~~~~~~~-----~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      ++||+|++....++.     ....+++++.++|+ |||.+++..
T Consensus       167 ~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~Lk-pgG~lv~~~  209 (304)
T 2o07_A          167 DAFDVIITDSSDPMGPAESLFKESYYQLMKTALK-EDGVLCCQG  209 (304)
T ss_dssp             SCEEEEEEECC-----------CHHHHHHHHHEE-EEEEEEEEE
T ss_pred             CCceEEEECCCCCCCcchhhhHHHHHHHHHhccC-CCeEEEEec
Confidence            789999997765543     12568999999999 999999865

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.40  E-value=7.2e-13  Score=115.36  Aligned_cols=94  Identities=21%  Similarity=0.225  Sum_probs=75.0

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCCCCceeE
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAAQSTVDL  103 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dl  103 (265)
                      .++.+|||||||+|.++..+++.+. +|+|+|+|+ |++.|++.       .++.+..       +|+++++++ ++||+
T Consensus        49 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~-------~d~~~~~~~-~~~D~  119 (348)
T 2y1w_A           49 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIP-------GKVEEVSLP-EQVDI  119 (348)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEE-------SCTTTCCCS-SCEEE
T ss_pred             CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEE-------cchhhCCCC-CceeE
Confidence            4668999999999999999998865 899999996 88877642       4677777       566666544 68999


Q ss_pred             EEeccccccC---ChhHHHHHHHHHhcCCCcEEEE
Q 024647          104 VTIAQAMHWF---DLPQFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus       104 v~~~~~~~~~---~~~~~l~~~~~~Lk~pgG~l~~  135 (265)
                      |++...+++.   +....+.++.++|+ |||.+++
T Consensus       120 Ivs~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~li~  153 (348)
T 2y1w_A          120 IISEPMGYMLFNERMLESYLHAKKYLK-PSGNMFP  153 (348)
T ss_dssp             EEECCCBTTBTTTSHHHHHHHGGGGEE-EEEEEES
T ss_pred             EEEeCchhcCChHHHHHHHHHHHhhcC-CCeEEEE
Confidence            9999765544   23578889999999 9999985

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.40  E-value=5.9e-13  Score=108.45  Aligned_cols=100  Identities=19%  Similarity=0.231  Sum_probs=74.8

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhc---CCcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccC--CCC
Q 024647           32 TNHELAWDVGTGSGQAAASLSGI---FENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVA--AQS   99 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~--~~~   99 (265)
                      .++.+|||+|||+|..+..+++.   ..+|+++|+++.+++.+++.       .++.+..+++.   ..+.....  ..+
T Consensus        63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~~~~~~~~~~~~  139 (225)
T 3tr6_A           63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAK---DTLAELIHAGQAW  139 (225)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHH---HHHHHHHTTTCTT
T ss_pred             hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHH---HHHHHhhhccCCC
Confidence            35679999999999999999987   45799999999999988752       34788885431   01111111  116


Q ss_pred             ceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          100 TVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       100 ~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      +||+|++...   . +...+++++.++|+ |||.+++.+.
T Consensus       140 ~fD~v~~~~~---~~~~~~~l~~~~~~L~-pgG~lv~~~~  175 (225)
T 3tr6_A          140 QYDLIYIDAD---KANTDLYYEESLKLLR-EGGLIAVDNV  175 (225)
T ss_dssp             CEEEEEECSC---GGGHHHHHHHHHHHEE-EEEEEEEECS
T ss_pred             CccEEEECCC---HHHHHHHHHHHHHhcC-CCcEEEEeCC
Confidence            8999996542   3 56789999999999 9999998544

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.40  E-value=5.6e-13  Score=118.46  Aligned_cols=110  Identities=14%  Similarity=0.168  Sum_probs=80.4

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHH-------Hc--------CCCceEEe
Q 024647           21 EELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFA-------TK--------LPNIRYEL   81 (265)
Q Consensus        21 ~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a-------~~--------~~~~~~~~   81 (265)
                      +.++..+....  .++.+|||+|||+|.++..+++.+  .+|+|+|+++.+++.|       ++        ..++.+..
T Consensus       228 p~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~  307 (433)
T 1u2z_A          228 PNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSL  307 (433)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEE
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEE
Confidence            34444444443  467899999999999999999864  3699999999998877       43        24677766


Q ss_pred             cCCccchhhhhh---ccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647           82 TSPAMSIAELEQ---NVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        82 ~~~~~~~~d~~~---~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      ++.      +..   +....++||+|+++..++.-+...++.++.++|| |||.+++..
T Consensus       308 gD~------~~~~~~~~~~~~~FDvIvvn~~l~~~d~~~~L~el~r~LK-pGG~lVi~d  359 (433)
T 1u2z_A          308 KKS------FVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAK-VGCKIISLK  359 (433)
T ss_dssp             SSC------STTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCC-TTCEEEESS
T ss_pred             cCc------cccccccccccCCCCEEEEeCccccccHHHHHHHHHHhCC-CCeEEEEee
Confidence            422      111   1112368999999876644477788999999999 999999854

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.39  E-value=8.4e-13  Score=114.32  Aligned_cols=110  Identities=19%  Similarity=0.235  Sum_probs=78.9

Q ss_pred             CCcHHHHHHHHhh-CCCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC-----------------CC
Q 024647           18 NYPEELFKFITSK-TTNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL-----------------PN   76 (265)
Q Consensus        18 ~y~~~l~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-----------------~~   76 (265)
                      .||......+... ..++.+|||+|||+|.++..+++..   .+|+++|+++.+++.|++.                 .+
T Consensus        89 ~~~~~~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~  168 (336)
T 2b25_A           89 TFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDN  168 (336)
T ss_dssp             CCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCC
T ss_pred             cCHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCc
Confidence            4544333333222 3567899999999999999999874   5799999999999988752                 35


Q ss_pred             ceEEecCCccchhhhhhc--cCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           77 IRYELTSPAMSIAELEQN--VAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        77 ~~~~~~~~~~~~~d~~~~--~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +.+..       +|+.+.  ++++++||+|+++..    ++..++.++.++|+ |||.+++..+.
T Consensus       169 v~~~~-------~d~~~~~~~~~~~~fD~V~~~~~----~~~~~l~~~~~~Lk-pgG~lv~~~~~  221 (336)
T 2b25_A          169 VDFIH-------KDISGATEDIKSLTFDAVALDML----NPHVTLPVFYPHLK-HGGVCAVYVVN  221 (336)
T ss_dssp             EEEEE-------SCTTCCC-------EEEEEECSS----STTTTHHHHGGGEE-EEEEEEEEESS
T ss_pred             eEEEE-------CChHHcccccCCCCeeEEEECCC----CHHHHHHHHHHhcC-CCcEEEEEeCC
Confidence            77777       455544  345678999998633    45568999999999 99999987764

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.39  E-value=5.6e-13  Score=116.42  Aligned_cols=95  Identities=18%  Similarity=0.237  Sum_probs=79.9

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecccc
Q 024647           33 NHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAM  110 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~  110 (265)
                      +..+|||||||+|.++..++++++  +++++|+ +.+++.+++.+++.+..       +|+.+ +.+  +||+|++..++
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~-------~d~~~-~~~--~~D~v~~~~vl  261 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTGNENLNFVG-------GDMFK-SIP--SADAVLLKWVL  261 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCCCSSEEEEE-------CCTTT-CCC--CCSEEEEESCG
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhcccCCCcEEEe-------CccCC-CCC--CceEEEEcccc
Confidence            557899999999999999999876  5889999 79999888777788887       55544 444  49999999999


Q ss_pred             ccC-Chh--HHHHHHHHHhcCC---CcEEEEEecC
Q 024647          111 HWF-DLP--QFYNQVKWVLKKP---NGVIATWCYT  139 (265)
Q Consensus       111 ~~~-~~~--~~l~~~~~~Lk~p---gG~l~~~~~~  139 (265)
                      |++ |..  .+++++.++|+ |   ||.+++....
T Consensus       262 h~~~d~~~~~~l~~~~~~L~-p~~~gG~l~i~e~~  295 (358)
T 1zg3_A          262 HDWNDEQSLKILKNSKEAIS-HKGKDGKVIIIDIS  295 (358)
T ss_dssp             GGSCHHHHHHHHHHHHHHTG-GGGGGCEEEEEECE
T ss_pred             cCCCHHHHHHHHHHHHHhCC-CCCCCcEEEEEEec
Confidence            977 655  89999999999 9   9999886654

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.39  E-value=1.9e-13  Score=107.29  Aligned_cols=85  Identities=13%  Similarity=0.111  Sum_probs=72.0

Q ss_pred             CCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC--CCceEEecCCccchhhhhhccC---CCCceeEEE
Q 024647           31 TTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL--PNIRYELTSPAMSIAELEQNVA---AQSTVDLVT  105 (265)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~--~~~~~~~~~~~~~~~d~~~~~~---~~~~~Dlv~  105 (265)
                      ++++.+|||+|||+              +++|+|+.|++.|++.  .++.+..       +|+++++.   ++++||+|+
T Consensus        10 ~~~g~~vL~~~~g~--------------v~vD~s~~ml~~a~~~~~~~~~~~~-------~d~~~~~~~~~~~~~fD~V~   68 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS--------------SPVEALKGLVDKLQALTGNEGRVSV-------ENIKQLLQSAHKESSFDIIL   68 (176)
T ss_dssp             CCTTSEEEEEECTT--------------SCHHHHHHHHHHHHHHTTTTSEEEE-------EEGGGGGGGCCCSSCEEEEE
T ss_pred             CCCCCEEEEecCCc--------------eeeeCCHHHHHHHHHhcccCcEEEE-------echhcCccccCCCCCEeEEE
Confidence            46788999999996              2399999999999863  3577777       66777765   788999999


Q ss_pred             eccccccC--ChhHHHHHHHHHhcCCCcEEEEEe
Q 024647          106 IAQAMHWF--DLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       106 ~~~~~~~~--~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      ++.++||+  ++..++++++|+|| |||.+++..
T Consensus        69 ~~~~l~~~~~~~~~~l~~~~r~Lk-pgG~l~~~~  101 (176)
T 2ld4_A           69 SGLVPGSTTLHSAEILAEIARILR-PGGCLFLKE  101 (176)
T ss_dssp             ECCSTTCCCCCCHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             ECChhhhcccCHHHHHHHHHHHCC-CCEEEEEEc
Confidence            99999998  78899999999999 999999853

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.39  E-value=1.4e-12  Score=109.06  Aligned_cols=93  Identities=15%  Similarity=0.034  Sum_probs=74.8

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC----------CCceEEecCCccchhhhhhccCCCCce
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL----------PNIRYELTSPAMSIAELEQNVAAQSTV  101 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~~~~d~~~~~~~~~~~  101 (265)
                      +.+.+|||||||+|.+++.++++..+|+++|+++.|++.|++.          +++++..       +|+....   ++|
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~-------~D~~~~~---~~f  140 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-------QLLDLDI---KKY  140 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEES-------SGGGSCC---CCE
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEe-------chHHHHH---hhC
Confidence            5568999999999999999987756799999999999999863          2344444       6665553   789


Q ss_pred             eEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          102 DLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       102 Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      |+|++..    .++..+++++.++|+ |||++++....
T Consensus       141 D~Ii~d~----~dp~~~~~~~~~~L~-pgG~lv~~~~~  173 (262)
T 2cmg_A          141 DLIFCLQ----EPDIHRIDGLKRMLK-EDGVFISVAKH  173 (262)
T ss_dssp             EEEEESS----CCCHHHHHHHHTTEE-EEEEEEEEEEC
T ss_pred             CEEEECC----CChHHHHHHHHHhcC-CCcEEEEEcCC
Confidence            9999872    366779999999999 99999986543

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.39  E-value=1.2e-12  Score=110.66  Aligned_cols=99  Identities=15%  Similarity=0.120  Sum_probs=75.6

Q ss_pred             CCCCCeEEEEcCCcchhHHHHHhcC-CcEEEEcCCHHHHHHHHcC----------------CCceEEecCCccchhhhhh
Q 024647           31 TTNHELAWDVGTGSGQAAASLSGIF-ENVIGTETSPKQIEFATKL----------------PNIRYELTSPAMSIAELEQ   93 (265)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~----------------~~~~~~~~~~~~~~~d~~~   93 (265)
                      .+.+.+|||||||+|.+++.++++. .+|++||+++.+++.|++.                +++++..       +|+.+
T Consensus        73 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~-------~D~~~  145 (281)
T 1mjf_A           73 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTI-------GDGFE  145 (281)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEE-------SCHHH
T ss_pred             CCCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEE-------CchHH
Confidence            3566899999999999999999883 3799999999999988742                2345555       55433


Q ss_pred             c-cCCCCceeEEEeccccccCC-----hhHHHHHHHHHhcCCCcEEEEEec
Q 024647           94 N-VAAQSTVDLVTIAQAMHWFD-----LPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        94 ~-~~~~~~~Dlv~~~~~~~~~~-----~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      . +. +++||+|++....++..     ...+++++.++|+ |||++++...
T Consensus       146 ~l~~-~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~-pgG~lv~~~~  194 (281)
T 1mjf_A          146 FIKN-NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALN-NPGIYVTQAG  194 (281)
T ss_dssp             HHHH-CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred             Hhcc-cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcC-CCcEEEEEcC
Confidence            2 22 57899999987655431     2678999999999 9999998653

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.38  E-value=1.4e-12  Score=112.73  Aligned_cols=113  Identities=16%  Similarity=0.155  Sum_probs=81.9

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC------C--CceEEecCCccchhhhhhccC----CCC
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL------P--NIRYELTSPAMSIAELEQNVA----AQS   99 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~--~~~~~~~~~~~~~~d~~~~~~----~~~   99 (265)
                      .++.+|||+|||+|.++..+++.+++|+++|+|+.+++.|++.      .  ++.+.+       +|+.++..    ..+
T Consensus       152 ~~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~-------~D~~~~l~~~~~~~~  224 (332)
T 2igt_A          152 DRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWIC-------EDAMKFIQREERRGS  224 (332)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEEC-------SCHHHHHHHHHHHTC
T ss_pred             CCCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEE-------CcHHHHHHHHHhcCC
Confidence            4567999999999999999999888999999999999988752      2  367777       44444321    146


Q ss_pred             ceeEEEeccc----------cccC-ChhHHHHHHHHHhcCCCcEEEEEecCCCCC-ChHHHHhhc
Q 024647          100 TVDLVTIAQA----------MHWF-DLPQFYNQVKWVLKKPNGVIATWCYTVPEV-NVSVDAVFQ  152 (265)
Q Consensus       100 ~~Dlv~~~~~----------~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~-~~~~~~~~~  152 (265)
                      +||+|+++..          +++. +...++.++.++|+ |||.+++.+...... ...+.+++.
T Consensus       225 ~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~Lk-pgG~lli~~~~~~~~~~~~~~~~l~  288 (332)
T 2igt_A          225 TYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILS-PKALGLVLTAYSIRASFYSMHELMR  288 (332)
T ss_dssp             CBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBC-TTCCEEEEEECCTTSCHHHHHHHHH
T ss_pred             CceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcC-cCcEEEEEECCCCCCCHHHHHHHHH
Confidence            8999999542          2233 45689999999999 999977755443332 234444444

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.38  E-value=2.4e-12  Score=104.69  Aligned_cols=101  Identities=17%  Similarity=0.151  Sum_probs=75.0

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhc---CCcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCC-CCc
Q 024647           32 TNHELAWDVGTGSGQAAASLSGI---FENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAA-QST  100 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~-~~~  100 (265)
                      .++.+|||+|||+|..+..+++.   ..+|+++|+++.+++.+++.       .++.+..+++.   ..+..++.. .++
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~~~~~~~~~~~~  133 (223)
T 3duw_A           57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLAL---DSLQQIENEKYEP  133 (223)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHH---HHHHHHHHTTCCC
T ss_pred             hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH---HHHHHHHhcCCCC
Confidence            45689999999999999999998   45899999999999988752       24788885431   001112111 267


Q ss_pred             eeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          101 VDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       101 ~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      ||+|++....+  +...+++++.++|+ |||.+++.+.
T Consensus       134 fD~v~~d~~~~--~~~~~l~~~~~~L~-pgG~lv~~~~  168 (223)
T 3duw_A          134 FDFIFIDADKQ--NNPAYFEWALKLSR-PGTVIIGDNV  168 (223)
T ss_dssp             CSEEEECSCGG--GHHHHHHHHHHTCC-TTCEEEEESC
T ss_pred             cCEEEEcCCcH--HHHHHHHHHHHhcC-CCcEEEEeCC
Confidence            99999875422  45689999999999 9998887543

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.38  E-value=1.5e-12  Score=111.67  Aligned_cols=99  Identities=15%  Similarity=0.170  Sum_probs=73.2

Q ss_pred             CCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC----------CCceEEecCCccchhhhhh-ccCC
Q 024647           31 TTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL----------PNIRYELTSPAMSIAELEQ-NVAA   97 (265)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~~~~d~~~-~~~~   97 (265)
                      .+.+.+|||||||+|.+++.++++.  .+|+++|+|+.+++.|++.          +++++..       +|+.. ++..
T Consensus       106 ~~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~-------~D~~~~l~~~  178 (314)
T 2b2c_A          106 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFC-------GDGFEFLKNH  178 (314)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEEC-------SCHHHHHHHC
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEE-------ChHHHHHHhc
Confidence            4566899999999999999999874  5799999999999998852          2355555       55443 2224


Q ss_pred             CCceeEEEeccccccCCh-----hHHHHHHHHHhcCCCcEEEEEe
Q 024647           98 QSTVDLVTIAQAMHWFDL-----PQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        98 ~~~~Dlv~~~~~~~~~~~-----~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      +++||+|++...-++-..     ..+++++.++|+ |||++++..
T Consensus       179 ~~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~Lk-pgG~lv~~~  222 (314)
T 2b2c_A          179 KNEFDVIITDSSDPVGPAESLFGQSYYELLRDALK-EDGILSSQG  222 (314)
T ss_dssp             TTCEEEEEECCC-------------HHHHHHHHEE-EEEEEEEEC
T ss_pred             CCCceEEEEcCCCCCCcchhhhHHHHHHHHHhhcC-CCeEEEEEC
Confidence            678999999765443311     578999999999 999999865

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.38  E-value=7.1e-13  Score=115.39  Aligned_cols=97  Identities=18%  Similarity=0.226  Sum_probs=78.7

Q ss_pred             CCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhcc-CCCCceeE
Q 024647           34 HELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNV-AAQSTVDL  103 (265)
Q Consensus        34 ~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~-~~~~~~Dl  103 (265)
                      +.+|||||||+|.++..++++++  +++++|+ +.+++.+++.       .++.+..       +|+.+.+ ..++.||+
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~-------~d~~~~~~~~~~~~D~  251 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFE-------KNLLDARNFEGGAADV  251 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEE-------CCTTCGGGGTTCCEEE
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEe-------CCcccCcccCCCCccE
Confidence            68999999999999999999865  6999999 8899887742       2477777       4544443 13456999


Q ss_pred             EEeccccccCCh---hHHHHHHHHHhcCCCcEEEEEecC
Q 024647          104 VTIAQAMHWFDL---PQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       104 v~~~~~~~~~~~---~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      |++..++|+++.   ..+++++.++|+ |||.+++....
T Consensus       252 v~~~~vlh~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~  289 (352)
T 3mcz_A          252 VMLNDCLHYFDAREAREVIGHAAGLVK-PGGALLILTMT  289 (352)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHTEE-EEEEEEEEEEC
T ss_pred             EEEecccccCCHHHHHHHHHHHHHHcC-CCCEEEEEEec
Confidence            999999998843   589999999999 99999986654

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.38  E-value=1.1e-12  Score=114.09  Aligned_cols=96  Identities=10%  Similarity=0.099  Sum_probs=74.1

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHc-----CCCceEEecCCccchhhhhhccCCCCceeEE
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATK-----LPNIRYELTSPAMSIAELEQNVAAQSTVDLV  104 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~-----~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv  104 (265)
                      ++..+|||||||+|..+..++++++  +++++|++ .++..++.     ..++.+..       +|+. .+.+  +||+|
T Consensus       183 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~~~~~~~~~~~~v~~~~-------~d~~-~~~p--~~D~v  251 (348)
T 3lst_A          183 PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVARHRLDAPDVAGRWKVVE-------GDFL-REVP--HADVH  251 (348)
T ss_dssp             CSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHTTCCCCCGGGTTSEEEEE-------CCTT-TCCC--CCSEE
T ss_pred             cCCceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhhcccccccCCCCCeEEEe-------cCCC-CCCC--CCcEE
Confidence            4567999999999999999999876  58999994 44442211     13577777       5553 2234  89999


Q ss_pred             EeccccccC-Ch--hHHHHHHHHHhcCCCcEEEEEecC
Q 024647          105 TIAQAMHWF-DL--PQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       105 ~~~~~~~~~-~~--~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      ++..++|++ |.  ..+++++.++|| |||.|++....
T Consensus       252 ~~~~vlh~~~d~~~~~~L~~~~~~Lk-pgG~l~i~e~~  288 (348)
T 3lst_A          252 VLKRILHNWGDEDSVRILTNCRRVMP-AHGRVLVIDAV  288 (348)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHTCC-TTCEEEEEECC
T ss_pred             EEehhccCCCHHHHHHHHHHHHHhcC-CCCEEEEEEec
Confidence            999999977 54  489999999999 99999987654

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.37  E-value=4e-13  Score=114.75  Aligned_cols=107  Identities=17%  Similarity=0.125  Sum_probs=75.9

Q ss_pred             HHHHHHHhh-CCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcC----CHHHHHHHH--cC--CCceEEecCCccchh-hh
Q 024647           22 ELFKFITSK-TTNHELAWDVGTGSGQAAASLSGIFENVIGTET----SPKQIEFAT--KL--PNIRYELTSPAMSIA-EL   91 (265)
Q Consensus        22 ~l~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~----s~~~~~~a~--~~--~~~~~~~~~~~~~~~-d~   91 (265)
                      ++.+.+... .+++.+|||||||+|.++..++++ .+|+|||+    ++.+++.+.  ..  +++.+.+       + |+
T Consensus        70 KL~~i~~~~~~~~g~~VLDlGcG~G~~s~~la~~-~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~-------~~D~  141 (305)
T 2p41_A           70 KLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGL-KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQS-------GVDV  141 (305)
T ss_dssp             HHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTS-TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEEC-------SCCT
T ss_pred             HHHHHHHcCCCCCCCEEEEEcCCCCHHHHHHHhc-CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEe-------cccc
Confidence            444434332 356689999999999999999998 78999999    665543221  11  4566666       4 55


Q ss_pred             hhccCCCCceeEEEecccc---ccC-Chh---HHHHHHHHHhcCCCcEEEEEecC
Q 024647           92 EQNVAAQSTVDLVTIAQAM---HWF-DLP---QFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        92 ~~~~~~~~~~Dlv~~~~~~---~~~-~~~---~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      ..+  +.++||+|+|..++   ||. |..   .++..+.++|| |||.|++-.+.
T Consensus       142 ~~l--~~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~Lk-pGG~~v~kv~~  193 (305)
T 2p41_A          142 FFI--PPERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLS-NNTQFCVKVLN  193 (305)
T ss_dssp             TTS--CCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCC-TTCEEEEEESC
T ss_pred             ccC--CcCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhC-CCCEEEEEeCC
Confidence            444  45689999998765   343 433   57889999999 99999885554

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.37  E-value=2e-12  Score=112.89  Aligned_cols=97  Identities=18%  Similarity=0.193  Sum_probs=77.7

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCCCCcee
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAAQSTVD  102 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~D  102 (265)
                      .+..+|||||||+|.++..+++.++  +++++|+ +.+++.+++.       .++.+..       +|+.+ +++. .||
T Consensus       182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~-------~d~~~-~~~~-~~D  251 (360)
T 1tw3_A          182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVE-------GDFFE-PLPR-KAD  251 (360)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEE-------CCTTS-CCSS-CEE
T ss_pred             ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEe-------CCCCC-CCCC-Ccc
Confidence            4567999999999999999998875  5889999 9999988752       2678887       44433 2333 499


Q ss_pred             EEEeccccccC-Ch--hHHHHHHHHHhcCCCcEEEEEecC
Q 024647          103 LVTIAQAMHWF-DL--PQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       103 lv~~~~~~~~~-~~--~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +|++..++|++ +.  ..+++++.++|+ |||.+++....
T Consensus       252 ~v~~~~vl~~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~  290 (360)
T 1tw3_A          252 AIILSFVLLNWPDHDAVRILTRCAEALE-PGGRILIHERD  290 (360)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHTEE-EEEEEEEEECC
T ss_pred             EEEEcccccCCCHHHHHHHHHHHHHhcC-CCcEEEEEEEe
Confidence            99999999877 43  379999999999 99999986654

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.37  E-value=1.5e-12  Score=106.28  Aligned_cols=116  Identities=21%  Similarity=0.291  Sum_probs=81.8

Q ss_pred             CCCcHHHHHHHHhh--CCCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC-------CCceEEecCC
Q 024647           17 PNYPEELFKFITSK--TTNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL-------PNIRYELTSP   84 (265)
Q Consensus        17 p~y~~~l~~~l~~~--~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~   84 (265)
                      +...+....++...  ..++.+|||+|||+|..+..+++..   .+|+++|+++.+++.+++.       .++.+..+++
T Consensus        51 ~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~  130 (229)
T 2avd_A           51 SMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPA  130 (229)
T ss_dssp             GSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCH
T ss_pred             CccCHHHHHHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCH
Confidence            44444544444332  2456899999999999999999863   5799999999999988752       4678887543


Q ss_pred             ccchhhhhhccCC--CCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647           85 AMSIAELEQNVAA--QSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        85 ~~~~~d~~~~~~~--~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      .   ..+..++..  .++||+|++...  ..+...+++++.++|+ |||.+++.+.
T Consensus       131 ~---~~~~~~~~~~~~~~~D~v~~d~~--~~~~~~~l~~~~~~L~-pgG~lv~~~~  180 (229)
T 2avd_A          131 L---ETLDELLAAGEAGTFDVAVVDAD--KENCSAYYERCLQLLR-PGGILAVLRV  180 (229)
T ss_dssp             H---HHHHHHHHTTCTTCEEEEEECSC--STTHHHHHHHHHHHEE-EEEEEEEECC
T ss_pred             H---HHHHHHHhcCCCCCccEEEECCC--HHHHHHHHHHHHHHcC-CCeEEEEECC
Confidence            1   011122111  168999998654  2255689999999999 9999988543

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.37  E-value=2.8e-12  Score=106.34  Aligned_cols=96  Identities=10%  Similarity=0.121  Sum_probs=74.7

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhc---CCcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhc-c-C---
Q 024647           32 TNHELAWDVGTGSGQAAASLSGI---FENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQN-V-A---   96 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~-~-~---   96 (265)
                      .++.+|||||||+|..+..+++.   ..+|+++|+|+.+++.|++.       .++.+..+++       .+. + +   
T Consensus        78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda-------~~~l~~l~~~  150 (247)
T 1sui_A           78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPA-------LPVLDEMIKD  150 (247)
T ss_dssp             TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCH-------HHHHHHHHHS
T ss_pred             hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCH-------HHHHHHHHhc
Confidence            45679999999999999999987   45799999999999988752       3577777443       322 1 1   


Q ss_pred             --CCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647           97 --AQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        97 --~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                        ++++||+|++....  -+...+++++.++|+ |||.+++.+
T Consensus       151 ~~~~~~fD~V~~d~~~--~~~~~~l~~~~~~Lk-pGG~lv~d~  190 (247)
T 1sui_A          151 EKNHGSYDFIFVDADK--DNYLNYHKRLIDLVK-VGGVIGYDN  190 (247)
T ss_dssp             GGGTTCBSEEEECSCS--TTHHHHHHHHHHHBC-TTCCEEEEC
T ss_pred             cCCCCCEEEEEEcCch--HHHHHHHHHHHHhCC-CCeEEEEec
Confidence              15789999987431  256789999999999 999998744

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.37  E-value=1.1e-12  Score=114.75  Aligned_cols=92  Identities=17%  Similarity=0.112  Sum_probs=72.9

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCCCCceeEE
Q 024647           33 NHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAAQSTVDLV  104 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv  104 (265)
                      ++++|||||||+|.++..+++.++ +|+|||.|+ |++.|++.       ..+.++.       ++++++.++ +.+|+|
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~-------~~~~~~~lp-e~~Dvi  153 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLP-------GPVETVELP-EQVDAI  153 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEE-------SCTTTCCCS-SCEEEE
T ss_pred             CCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEe-------eeeeeecCC-ccccEE
Confidence            568999999999999999999987 599999996 77777651       3577777       566777655 689999


Q ss_pred             Eecccc---ccC-ChhHHHHHHHHHhcCCCcEEE
Q 024647          105 TIAQAM---HWF-DLPQFYNQVKWVLKKPNGVIA  134 (265)
Q Consensus       105 ~~~~~~---~~~-~~~~~l~~~~~~Lk~pgG~l~  134 (265)
                      ++.+.-   .+- ..+.++....+.|+ |||.++
T Consensus       154 vsE~~~~~l~~e~~l~~~l~a~~r~Lk-p~G~~i  186 (376)
T 4hc4_A          154 VSEWMGYGLLHESMLSSVLHARTKWLK-EGGLLL  186 (376)
T ss_dssp             ECCCCBTTBTTTCSHHHHHHHHHHHEE-EEEEEE
T ss_pred             EeecccccccccchhhhHHHHHHhhCC-CCceEC
Confidence            985533   222 45678888899999 999887

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.37  E-value=2.2e-12  Score=107.65  Aligned_cols=99  Identities=17%  Similarity=0.185  Sum_probs=71.8

Q ss_pred             CCeEEEEcCCc--chhHHHHHhc---CCcEEEEcCCHHHHHHHHcC------CCceEEecCCccchhhhhhcc----CC-
Q 024647           34 HELAWDVGTGS--GQAAASLSGI---FENVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAELEQNV----AA-   97 (265)
Q Consensus        34 ~~~vlDvGcG~--G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d~~~~~----~~-   97 (265)
                      ...+||||||+  +..+..++++   .++|++||.|+.|++.|+.+      .++.+++.++       .+..    .+ 
T Consensus        79 ~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~-------~~~~~~l~~~~  151 (277)
T 3giw_A           79 IRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADM-------LDPASILDAPE  151 (277)
T ss_dssp             CCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCT-------TCHHHHHTCHH
T ss_pred             CCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecc-------cChhhhhcccc
Confidence            36799999997  4344555443   35799999999999998752      2477888544       3321    00 


Q ss_pred             -CCcee-----EEEeccccccC-C---hhHHHHHHHHHhcCCCcEEEEEecCC
Q 024647           98 -QSTVD-----LVTIAQAMHWF-D---LPQFYNQVKWVLKKPNGVIATWCYTV  140 (265)
Q Consensus        98 -~~~~D-----lv~~~~~~~~~-~---~~~~l~~~~~~Lk~pgG~l~~~~~~~  140 (265)
                       .++||     .|+++.++||+ |   +..+++++.+.|+ |||.|++.....
T Consensus       152 ~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~-PGG~Lvls~~~~  203 (277)
T 3giw_A          152 LRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLP-SGSYLAMSIGTA  203 (277)
T ss_dssp             HHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSC-TTCEEEEEEECC
T ss_pred             cccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCC-CCcEEEEEeccC
Confidence             23344     58889999999 5   3579999999999 999999977654

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.36  E-value=3.7e-13  Score=111.33  Aligned_cols=97  Identities=19%  Similarity=0.231  Sum_probs=74.6

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhc-cC----
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQN-VA----   96 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~-~~----   96 (265)
                      .++.+|||+|||+|..+..+++..   .+|+++|+++.+++.|++.       .++.+..++       +.+. +.    
T Consensus        59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd-------a~~~l~~~~~~  131 (242)
T 3r3h_A           59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGP-------ALDTLHSLLNE  131 (242)
T ss_dssp             HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESC-------HHHHHHHHHHH
T ss_pred             cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcC-------HHHHHHHHhhc
Confidence            355789999999999999999864   4799999999998877642       368888844       3332 11    


Q ss_pred             -CCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647           97 -AQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        97 -~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                       .+++||+|++...  .-+...+++++.++|+ |||+|++-+.
T Consensus       132 ~~~~~fD~V~~d~~--~~~~~~~l~~~~~~Lk-pGG~lv~d~~  171 (242)
T 3r3h_A          132 GGEHQFDFIFIDAD--KTNYLNYYELALKLVT-PKGLIAIDNI  171 (242)
T ss_dssp             HCSSCEEEEEEESC--GGGHHHHHHHHHHHEE-EEEEEEEECS
T ss_pred             cCCCCEeEEEEcCC--hHHhHHHHHHHHHhcC-CCeEEEEECC
Confidence             1478999998753  1256678999999999 9999998443

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.35  E-value=3.8e-12  Score=107.66  Aligned_cols=109  Identities=19%  Similarity=0.188  Sum_probs=80.1

Q ss_pred             cHHHHHHHHhhCC--CCCeEEEEcCCcchhHHHHHhc-CCcEEEEcCCHHHHHHHHcC------C-CceEEecCCccchh
Q 024647           20 PEELFKFITSKTT--NHELAWDVGTGSGQAAASLSGI-FENVIGTETSPKQIEFATKL------P-NIRYELTSPAMSIA   89 (265)
Q Consensus        20 ~~~l~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~------~-~~~~~~~~~~~~~~   89 (265)
                      .+.+++.+....+  ++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|++.      . ++.+..+       
T Consensus       108 te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~-------  180 (284)
T 1nv8_A          108 TEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKG-------  180 (284)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEES-------
T ss_pred             HHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEEC-------
Confidence            4566666665442  5578999999999999999988 56899999999999998752      2 3778874       


Q ss_pred             hhhhccCCCCce---eEEEecccccc----------CC----------hhHHHHHHH-HHhcCCCcEEEEEec
Q 024647           90 ELEQNVAAQSTV---DLVTIAQAMHW----------FD----------LPQFYNQVK-WVLKKPNGVIATWCY  138 (265)
Q Consensus        90 d~~~~~~~~~~~---Dlv~~~~~~~~----------~~----------~~~~l~~~~-~~Lk~pgG~l~~~~~  138 (265)
                      |+.+. ++ ++|   |+|+++.....          .+          ...+++++. +.|+ |||.+++...
T Consensus       181 D~~~~-~~-~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~-pgG~l~~e~~  250 (284)
T 1nv8_A          181 EFLEP-FK-EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDT-SGKIVLMEIG  250 (284)
T ss_dssp             STTGG-GG-GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCC-TTCEEEEECC
T ss_pred             cchhh-cc-cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCC-CCCEEEEEEC
Confidence            44432 12 478   99999732110          11          227899999 9999 9999998543

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.35  E-value=1.8e-12  Score=103.72  Aligned_cols=85  Identities=16%  Similarity=0.150  Sum_probs=65.6

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC-CCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL-PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA  109 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~  109 (265)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.+++. .++.+..       +|+.+++   ++||+|+++..
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-------~d~~~~~---~~~D~v~~~~p  119 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMV-------ADVSEIS---GKYDTWIMNPP  119 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEE-------CCGGGCC---CCEEEEEECCC
T ss_pred             CCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcCCCEEEE-------CcHHHCC---CCeeEEEECCC
Confidence            3567999999999999999998855 699999999999999863 3677777       5666653   68999999999


Q ss_pred             cccCCh---hHHHHHHHHHh
Q 024647          110 MHWFDL---PQFYNQVKWVL  126 (265)
Q Consensus       110 ~~~~~~---~~~l~~~~~~L  126 (265)
                      +|+...   ..+++++.++|
T Consensus       120 ~~~~~~~~~~~~l~~~~~~~  139 (200)
T 1ne2_A          120 FGSVVKHSDRAFIDKAFETS  139 (200)
T ss_dssp             C-------CHHHHHHHHHHE
T ss_pred             chhccCchhHHHHHHHHHhc
Confidence            998832   35777777766

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.34  E-value=2.8e-12  Score=108.52  Aligned_cols=105  Identities=14%  Similarity=0.208  Sum_probs=79.0

Q ss_pred             cHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhh
Q 024647           20 PEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAE   90 (265)
Q Consensus        20 ~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d   90 (265)
                      .+.+++.+....  .++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.+++.       +++.+..       +|
T Consensus        13 d~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~-------~D   85 (285)
T 1zq9_A           13 NPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLV-------GD   85 (285)
T ss_dssp             CHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEE-------SC
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEE-------cc
Confidence            456677776654  4567999999999999999999999999999999999988752       3567777       66


Q ss_pred             hhhccCCCCceeEEEeccccccCChh--HHH--------------HHH--HHHhcCCCcEEE
Q 024647           91 LEQNVAAQSTVDLVTIAQAMHWFDLP--QFY--------------NQV--KWVLKKPNGVIA  134 (265)
Q Consensus        91 ~~~~~~~~~~~Dlv~~~~~~~~~~~~--~~l--------------~~~--~~~Lk~pgG~l~  134 (265)
                      +.+++++  +||+|+++...||..+.  .++              +++  +++|+ |||.++
T Consensus        86 ~~~~~~~--~fD~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlk-PGg~~y  144 (285)
T 1zq9_A           86 VLKTDLP--FFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAK-PGDKLY  144 (285)
T ss_dssp             TTTSCCC--CCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCC-TTCTTC
T ss_pred             eecccch--hhcEEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcC-CCCccc
Confidence            6665544  79999999887776321  222              333  36889 999863

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.33  E-value=5.2e-12  Score=103.66  Aligned_cols=101  Identities=21%  Similarity=0.305  Sum_probs=76.0

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCCC--C
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAAQ--S   99 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~~--~   99 (265)
                      .++.+|||+|||+|..+..+++..   .+|+++|+|+.+++.|++.       .++.+..+++.   ..+..++..+  +
T Consensus        71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~---~~l~~l~~~~~~~  147 (232)
T 3cbg_A           71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPAL---ATLEQLTQGKPLP  147 (232)
T ss_dssp             HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHH---HHHHHHHTSSSCC
T ss_pred             cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH---HHHHHHHhcCCCC
Confidence            355789999999999999999875   4799999999999988752       34777775431   1122333333  7


Q ss_pred             ceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          100 TVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       100 ~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      +||+|++....  -+...+++++.++|+ |||.+++.+.
T Consensus       148 ~fD~V~~d~~~--~~~~~~l~~~~~~Lk-pgG~lv~~~~  183 (232)
T 3cbg_A          148 EFDLIFIDADK--RNYPRYYEIGLNLLR-RGGLMVIDNV  183 (232)
T ss_dssp             CEEEEEECSCG--GGHHHHHHHHHHTEE-EEEEEEEECT
T ss_pred             CcCEEEECCCH--HHHHHHHHHHHHHcC-CCeEEEEeCC
Confidence            89999987541  255789999999999 9999998543

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.33  E-value=7e-12  Score=103.25  Aligned_cols=99  Identities=10%  Similarity=0.099  Sum_probs=74.1

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhc---CCcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhh-hhcc---CC
Q 024647           32 TNHELAWDVGTGSGQAAASLSGI---FENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAEL-EQNV---AA   97 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~-~~~~---~~   97 (265)
                      .++.+|||+|||+|..+..+++.   ..+|+++|+++.+++.|++.       .++++..+++    .+. ..+.   .+
T Consensus        69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda----~~~l~~l~~~~~~  144 (237)
T 3c3y_A           69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDA----MLALDNLLQGQES  144 (237)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCH----HHHHHHHHHSTTC
T ss_pred             hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH----HHHHHHHHhccCC
Confidence            45679999999999999999987   45799999999999988752       2477777543    111 1111   02


Q ss_pred             CCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647           98 QSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        98 ~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      .++||+|++....  -+...+++++.++|+ |||.+++.+
T Consensus       145 ~~~fD~I~~d~~~--~~~~~~l~~~~~~L~-pGG~lv~d~  181 (237)
T 3c3y_A          145 EGSYDFGFVDADK--PNYIKYHERLMKLVK-VGGIVAYDN  181 (237)
T ss_dssp             TTCEEEEEECSCG--GGHHHHHHHHHHHEE-EEEEEEEEC
T ss_pred             CCCcCEEEECCch--HHHHHHHHHHHHhcC-CCeEEEEec
Confidence            5789999986321  155789999999999 999998854

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.32  E-value=3e-12  Score=105.44  Aligned_cols=100  Identities=20%  Similarity=0.305  Sum_probs=74.6

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhcc------
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNV------   95 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~------   95 (265)
                      .++.+|||+|||+|..+..+++..   .+|+++|+++.+++.|++.       .++.+..+++..   .+..+.      
T Consensus        59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~---~~~~~~~~~~~~  135 (239)
T 2hnk_A           59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALE---TLQVLIDSKSAP  135 (239)
T ss_dssp             HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH---HHHHHHHCSSCC
T ss_pred             hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHH---HHHHHHhhcccc
Confidence            456899999999999999999884   5899999999999988752       237777754310   011111      


Q ss_pred             -----CCC--CceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647           96 -----AAQ--STVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        96 -----~~~--~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                           +++  ++||+|++.....  +...+++++.++|+ |||.+++.+
T Consensus       136 ~~~~~f~~~~~~fD~I~~~~~~~--~~~~~l~~~~~~L~-pgG~lv~~~  181 (239)
T 2hnk_A          136 SWASDFAFGPSSIDLFFLDADKE--NYPNYYPLILKLLK-PGGLLIADN  181 (239)
T ss_dssp             GGGTTTCCSTTCEEEEEECSCGG--GHHHHHHHHHHHEE-EEEEEEEEC
T ss_pred             cccccccCCCCCcCEEEEeCCHH--HHHHHHHHHHHHcC-CCeEEEEEc
Confidence                 222  7899999874321  45689999999999 999999854

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.32  E-value=1.6e-12  Score=114.72  Aligned_cols=110  Identities=9%  Similarity=0.024  Sum_probs=79.2

Q ss_pred             HHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC-----CCceEEecCCccchhhhhhcc-CC
Q 024647           24 FKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL-----PNIRYELTSPAMSIAELEQNV-AA   97 (265)
Q Consensus        24 ~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~d~~~~~-~~   97 (265)
                      ..++.....++.+|||+|||+|.++..+++.+++|+++|+|+.+++.+++.     ....+..       +|+.++. ..
T Consensus       205 r~~l~~~~~~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng~~~~~~~-------~D~~~~l~~~  277 (393)
T 4dmg_A          205 RRLFEAMVRPGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGLRVDIRH-------GEALPTLRGL  277 (393)
T ss_dssp             HHHHHTTCCTTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCCEEEE-------SCHHHHHHTC
T ss_pred             HHHHHHHhcCCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEE-------ccHHHHHHHh
Confidence            334444455588999999999999999999988899999999999998752     1123444       5554431 11


Q ss_pred             CCceeEEEecccc-cc--------C-ChhHHHHHHHHHhcCCCcEEEEEecCCC
Q 024647           98 QSTVDLVTIAQAM-HW--------F-DLPQFYNQVKWVLKKPNGVIATWCYTVP  141 (265)
Q Consensus        98 ~~~~Dlv~~~~~~-~~--------~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~~  141 (265)
                      .+.||+|+++... +.        . +...++..+.++|+ |||.|++......
T Consensus       278 ~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~Lk-pGG~Lv~~s~s~~  330 (393)
T 4dmg_A          278 EGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLA-EEGFLWLSSCSYH  330 (393)
T ss_dssp             CCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEE-EEEEEEEEECCTT
T ss_pred             cCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEECCCC
Confidence            3349999987532 11        1 23478889999999 9999997666533

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.31  E-value=6.3e-12  Score=110.81  Aligned_cols=110  Identities=8%  Similarity=0.019  Sum_probs=78.2

Q ss_pred             HHHhhCCCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC------C--CceEEecCCccchhh-hhhcc
Q 024647           26 FITSKTTNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL------P--NIRYELTSPAMSIAE-LEQNV   95 (265)
Q Consensus        26 ~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~------~--~~~~~~~~~~~~~~d-~~~~~   95 (265)
                      ++.....++.+|||+|||+|.++..+++.++ +|+++|+|+.+++.|++.      .  ++.+..+++    .+ +..+.
T Consensus       205 ~~~~~~~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~----~~~l~~~~  280 (385)
T 2b78_A          205 ELINGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDV----FDYFKYAR  280 (385)
T ss_dssp             HHHHTTTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCH----HHHHHHHH
T ss_pred             HHHHHhcCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCH----HHHHHHHH
Confidence            3433325668999999999999999998765 799999999999988752      2  677887443    11 11121


Q ss_pred             CCCCceeEEEecccc-----ccC-C----hhHHHHHHHHHhcCCCcEEEEEecCC
Q 024647           96 AAQSTVDLVTIAQAM-----HWF-D----LPQFYNQVKWVLKKPNGVIATWCYTV  140 (265)
Q Consensus        96 ~~~~~~Dlv~~~~~~-----~~~-~----~~~~l~~~~~~Lk~pgG~l~~~~~~~  140 (265)
                      ...++||+|++....     +.. +    ...++..+.++|+ |||.+++.+...
T Consensus       281 ~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~-pgG~l~~~~~~~  334 (385)
T 2b78_A          281 RHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILS-ENGLIIASTNAA  334 (385)
T ss_dssp             HTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEE-EEEEEEEEECCT
T ss_pred             HhCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcC-CCcEEEEEeCCC
Confidence            124589999986532     122 2    3356788899999 999999877653

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.31  E-value=1.2e-11  Score=106.04  Aligned_cols=100  Identities=12%  Similarity=0.124  Sum_probs=76.2

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC------CCceEEecCCccchhhhhhccCCCCcee
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAELEQNVAAQSTVD  102 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d~~~~~~~~~~~D  102 (265)
                      .++.+|||+|||+|..+..+++..   .+|+|+|+|+.+++.+++.      .++.+..       +|+..++..+++||
T Consensus       117 ~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~-------~D~~~~~~~~~~fD  189 (315)
T 1ixk_A          117 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFH-------SSSLHIGELNVEFD  189 (315)
T ss_dssp             CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEES-------SCGGGGGGGCCCEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEE-------CChhhcccccccCC
Confidence            566899999999999999999874   4799999999999988752      4667766       55555543456899


Q ss_pred             EEEeccc------cccC-C----------------hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          103 LVTIAQA------MHWF-D----------------LPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       103 lv~~~~~------~~~~-~----------------~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +|++...      ++.. +                ...+++++.++|| |||.+++.+..
T Consensus       190 ~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~Lk-pGG~lv~stcs  248 (315)
T 1ixk_A          190 KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLK-PGGILVYSTCS  248 (315)
T ss_dssp             EEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEEEESC
T ss_pred             EEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeCC
Confidence            9998532      2211 1                1478999999999 99999987664

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.30  E-value=3.2e-12  Score=115.58  Aligned_cols=94  Identities=21%  Similarity=0.234  Sum_probs=74.1

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCCCCceeE
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAAQSTVDL  103 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dl  103 (265)
                      .++.+|||||||+|.++..+++.+. +|+|+|+|+ |++.|++.       .++.+..       +|+.+++++ ++||+
T Consensus       157 ~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~-------~d~~~~~~~-~~fD~  227 (480)
T 3b3j_A          157 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIP-------GKVEEVSLP-EQVDI  227 (480)
T ss_dssp             TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEE-------SCTTTCCCS-SCEEE
T ss_pred             cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEE-------CchhhCccC-CCeEE
Confidence            3568999999999999999998764 899999998 88887642       4677877       556665544 58999


Q ss_pred             EEeccccccC-C--hhHHHHHHHHHhcCCCcEEEE
Q 024647          104 VTIAQAMHWF-D--LPQFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus       104 v~~~~~~~~~-~--~~~~l~~~~~~Lk~pgG~l~~  135 (265)
                      |+++..++.. +  ....+.++.++|+ |||.+++
T Consensus       228 Ivs~~~~~~~~~e~~~~~l~~~~~~Lk-pgG~li~  261 (480)
T 3b3j_A          228 IISEPMGYMLFNERMLESYLHAKKYLK-PSGNMFP  261 (480)
T ss_dssp             EECCCCHHHHTCHHHHHHHHHGGGGEE-EEEEEES
T ss_pred             EEEeCchHhcCcHHHHHHHHHHHHhcC-CCCEEEE
Confidence            9998765443 3  3457778899999 9999985

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.30  E-value=1.8e-12  Score=107.62  Aligned_cols=96  Identities=13%  Similarity=0.049  Sum_probs=67.7

Q ss_pred             CCCeEEEEcCCcchhHHHHHhc--CCcEEEEcCCHHHHHHHHcC------C-CceEEecCCccchhhhhhc---cCC---
Q 024647           33 NHELAWDVGTGSGQAAASLSGI--FENVIGTETSPKQIEFATKL------P-NIRYELTSPAMSIAELEQN---VAA---   97 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~------~-~~~~~~~~~~~~~~d~~~~---~~~---   97 (265)
                      ++.+|||+|||+|.++..++++  ..+|+|+|+|+.|++.|++.      . ++.+...+       +.+.   +++   
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d-------~~~~~~~~~~~~~  137 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVP-------QKTLLMDALKEES  137 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECC-------TTCSSTTTSTTCC
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcc-------hhhhhhhhhhccc
Confidence            4678999999999999999876  46899999999999988752      2 37777744       3331   233   


Q ss_pred             CCceeEEEeccccccCC----------------hhHHHHHHHHHhcCCCcEEEEE
Q 024647           98 QSTVDLVTIAQAMHWFD----------------LPQFYNQVKWVLKKPNGVIATW  136 (265)
Q Consensus        98 ~~~~Dlv~~~~~~~~~~----------------~~~~l~~~~~~Lk~pgG~l~~~  136 (265)
                      +++||+|+++..+|...                ...++.++.++|| |||.+.+.
T Consensus       138 ~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Lk-pgG~l~~~  191 (254)
T 2h00_A          138 EIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMA-EGGELEFV  191 (254)
T ss_dssp             SCCBSEEEECCCCC-------------------------CTTTTHH-HHTHHHHH
T ss_pred             CCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEe-cCCEEEEE
Confidence            26899999997655432                1245678899999 99988654

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.29  E-value=1.1e-11  Score=108.76  Aligned_cols=97  Identities=11%  Similarity=-0.011  Sum_probs=76.5

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC------CCceEEecCCccchhhhhh-ccC-CCCcee
Q 024647           33 NHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAELEQ-NVA-AQSTVD  102 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d~~~-~~~-~~~~~D  102 (265)
                      ++.+|||+| |+|.++..++..++  +|+++|+|+.|++.|++.      .++.+..       +|+.+ ++. .+++||
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~-------~D~~~~l~~~~~~~fD  243 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFT-------FDLRKPLPDYALHKFD  243 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEEC-------CCTTSCCCTTTSSCBS
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEE-------ChhhhhchhhccCCcc
Confidence            568999999 99999999998865  799999999999998752      2577776       56655 442 346899


Q ss_pred             EEEeccccccCChhHHHHHHHHHhcCCCcEE-EEEec
Q 024647          103 LVTIAQAMHWFDLPQFYNQVKWVLKKPNGVI-ATWCY  138 (265)
Q Consensus       103 lv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l-~~~~~  138 (265)
                      +|+++..++......+++++.++|+ |||.+ ++...
T Consensus       244 ~Vi~~~p~~~~~~~~~l~~~~~~Lk-pgG~~~~~~~~  279 (373)
T 2qm3_A          244 TFITDPPETLEAIRAFVGRGIATLK-GPRCAGYFGIT  279 (373)
T ss_dssp             EEEECCCSSHHHHHHHHHHHHHTBC-STTCEEEEEEC
T ss_pred             EEEECCCCchHHHHHHHHHHHHHcc-cCCeEEEEEEe
Confidence            9999977665445789999999999 99954 44433

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.28  E-value=9.3e-12  Score=104.73  Aligned_cols=100  Identities=11%  Similarity=0.130  Sum_probs=76.8

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhccC----CC
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQNVA----AQ   98 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~~~----~~   98 (265)
                      .++.+|||+|||+|..+..+++..   .+|+|+|+|+.+++.+++      ..++.+..       +|+..++.    ..
T Consensus        82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~-------~D~~~~~~~~~~~~  154 (274)
T 3ajd_A           82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIIN-------ADMRKYKDYLLKNE  154 (274)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEE-------SCHHHHHHHHHHTT
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEe-------CChHhcchhhhhcc
Confidence            466899999999999999999853   579999999999998765      24677777       45554432    25


Q ss_pred             CceeEEEeccccc------------------cC-ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           99 STVDLVTIAQAMH------------------WF-DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        99 ~~~Dlv~~~~~~~------------------~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      ++||+|++.....                  .. ....+++++.++|| |||.+++.+..
T Consensus       155 ~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~lv~stcs  213 (274)
T 3ajd_A          155 IFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLK-KDGELVYSTCS  213 (274)
T ss_dssp             CCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEE-EEEEEEEEESC
T ss_pred             ccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECC
Confidence            6899999874221                  11 34678999999999 99999987664

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.26  E-value=1.8e-11  Score=99.47  Aligned_cols=118  Identities=14%  Similarity=0.052  Sum_probs=84.4

Q ss_pred             HHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhh-h
Q 024647           23 LFKFITSKTTNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAEL-E   92 (265)
Q Consensus        23 l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~-~   92 (265)
                      -++.+....+++.+|||||||+|.++..+++.++  +|+++|+++.+++.|++.       .++.+..+       |. +
T Consensus         5 RL~~l~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~-------d~l~   77 (225)
T 3kr9_A            5 RLELVASFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLA-------NGLA   77 (225)
T ss_dssp             HHHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEEC-------SGGG
T ss_pred             HHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEEC-------chhh
Confidence            3456777778888999999999999999999874  699999999999998752       24777774       43 3


Q ss_pred             hccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHhhcc
Q 024647           93 QNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQP  153 (265)
Q Consensus        93 ~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~~~  153 (265)
                      .++ +.++||+|+.+..--- -...++.++.+.|+ |+|+|++....   -...+.+.+.+
T Consensus        78 ~l~-~~~~~D~IviaG~Gg~-~i~~Il~~~~~~L~-~~~~lVlq~~~---~~~~vr~~L~~  132 (225)
T 3kr9_A           78 AFE-ETDQVSVITIAGMGGR-LIARILEEGLGKLA-NVERLILQPNN---REDDLRIWLQD  132 (225)
T ss_dssp             GCC-GGGCCCEEEEEEECHH-HHHHHHHHTGGGCT-TCCEEEEEESS---CHHHHHHHHHH
T ss_pred             hcc-cCcCCCEEEEcCCChH-HHHHHHHHHHHHhC-CCCEEEEECCC---CHHHHHHHHHH
Confidence            332 2236999887543110 13578889999999 99999885542   23445544433

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.26  E-value=2.3e-11  Score=99.16  Aligned_cols=118  Identities=14%  Similarity=0.011  Sum_probs=84.9

Q ss_pred             HHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhc
Q 024647           24 FKFITSKTTNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQN   94 (265)
Q Consensus        24 ~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~   94 (265)
                      ++.+..+.+++.+|+|||||+|.++..+++.++  +|+|+|+++.+++.|++.       .++.+..       +|..+.
T Consensus        12 L~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~-------gD~l~~   84 (230)
T 3lec_A           12 LQKVANYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRL-------ANGLSA   84 (230)
T ss_dssp             HHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEE-------CSGGGG
T ss_pred             HHHHHHhCCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE-------Cchhhc
Confidence            446777778889999999999999999999874  699999999999999852       2477777       454444


Q ss_pred             cCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHhhcc
Q 024647           95 VAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQP  153 (265)
Q Consensus        95 ~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~~~  153 (265)
                      ..+.++||+|+.+...- --....+.+..+.|+ ++|.|++.....   ...+++++.+
T Consensus        85 ~~~~~~~D~IviaGmGg-~lI~~IL~~~~~~l~-~~~~lIlqp~~~---~~~lr~~L~~  138 (230)
T 3lec_A           85 FEEADNIDTITICGMGG-RLIADILNNDIDKLQ-HVKTLVLQPNNR---EDDLRKWLAA  138 (230)
T ss_dssp             CCGGGCCCEEEEEEECH-HHHHHHHHHTGGGGT-TCCEEEEEESSC---HHHHHHHHHH
T ss_pred             cccccccCEEEEeCCch-HHHHHHHHHHHHHhC-cCCEEEEECCCC---hHHHHHHHHH
Confidence            33434799988644211 013467888889999 999999866432   3444544433

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.25  E-value=6.9e-12  Score=110.50  Aligned_cols=100  Identities=22%  Similarity=0.209  Sum_probs=77.1

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhcc----CCCCcee
Q 024647           33 NHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQNV----AAQSTVD  102 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D  102 (265)
                      ++.+|||+|||+|.++..+++...+|+++|+|+.+++.|++      ..++.+..+       |+.++.    ..+++||
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~-------d~~~~~~~~~~~~~~fD  281 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEA-------NAFDLLRRLEKEGERFD  281 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEES-------CHHHHHHHHHHTTCCEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEC-------CHHHHHHHHHhcCCCee
Confidence            66789999999999999999886689999999999998875      245777774       444332    1256899


Q ss_pred             EEEeccccc---------cC-ChhHHHHHHHHHhcCCCcEEEEEecCC
Q 024647          103 LVTIAQAMH---------WF-DLPQFYNQVKWVLKKPNGVIATWCYTV  140 (265)
Q Consensus       103 lv~~~~~~~---------~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~  140 (265)
                      +|++.....         .. +...++.++.++|+ |||.+++.+...
T Consensus       282 ~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~  328 (382)
T 1wxx_A          282 LVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLK-EGGILATASCSH  328 (382)
T ss_dssp             EEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEE-EEEEEEEEECCT
T ss_pred             EEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEECCC
Confidence            999864321         11 23568899999999 999999877653

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.25  E-value=1e-11  Score=109.84  Aligned_cols=109  Identities=17%  Similarity=0.128  Sum_probs=80.7

Q ss_pred             HHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC------C-CceEEecCCccchhhhhhcc
Q 024647           24 FKFITSKTTNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL------P-NIRYELTSPAMSIAELEQNV   95 (265)
Q Consensus        24 ~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~------~-~~~~~~~~~~~~~~d~~~~~   95 (265)
                      ..++....+++.+|||+|||+|.++..+++.++ +|+|+|+|+.+++.|++.      . ++.+...       |+.+..
T Consensus       208 ~~~~~~~~~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~-------d~~~~~  280 (396)
T 2as0_A          208 RLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVG-------SAFEEM  280 (396)
T ss_dssp             HHHHGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEES-------CHHHHH
T ss_pred             HHHHHHHhhCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEC-------CHHHHH
Confidence            334444444778999999999999999999854 899999999999988752      2 6777774       443331


Q ss_pred             ----CCCCceeEEEecccc---------ccC-ChhHHHHHHHHHhcCCCcEEEEEecCC
Q 024647           96 ----AAQSTVDLVTIAQAM---------HWF-DLPQFYNQVKWVLKKPNGVIATWCYTV  140 (265)
Q Consensus        96 ----~~~~~~Dlv~~~~~~---------~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~  140 (265)
                          ...++||+|++....         +.. +...++.++.++|+ |||.+++.+...
T Consensus       281 ~~~~~~~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~lv~~~~~~  338 (396)
T 2as0_A          281 EKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVK-DGGILVTCSCSQ  338 (396)
T ss_dssp             HHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEE-EEEEEEEEECCT
T ss_pred             HHHHhhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEEECCC
Confidence                135689999996432         111 34578899999999 999998876653

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.25  E-value=1.1e-11  Score=102.48  Aligned_cols=94  Identities=12%  Similarity=0.085  Sum_probs=67.8

Q ss_pred             HHHHhhhCCCCcHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC----CCceEEec
Q 024647            9 AKQYAETRPNYPEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL----PNIRYELT   82 (265)
Q Consensus         9 a~~Y~~~rp~y~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~~~~~~~~   82 (265)
                      ...|.+... ..+.+.+.+....  .++.+|||+|||+|.++..+++++.+|+|+|+|+.|++.+++.    +++.+.. 
T Consensus         5 ~k~~gQ~fl-~d~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~-   82 (244)
T 1qam_A            5 NIKHSQNFI-TSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQVLN-   82 (244)
T ss_dssp             -----CCBC-CCHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTCCSEEEEC-
T ss_pred             CccCCcccc-CCHHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhccCCCeEEEE-
Confidence            355666433 3677888887765  3567999999999999999999999999999999999998752    4566666 


Q ss_pred             CCccchhhhhhccCCC-CceeEEEeccccc
Q 024647           83 SPAMSIAELEQNVAAQ-STVDLVTIAQAMH  111 (265)
Q Consensus        83 ~~~~~~~d~~~~~~~~-~~~Dlv~~~~~~~  111 (265)
                            +|+.++++++ ..| .|+++...+
T Consensus        83 ------~D~~~~~~~~~~~~-~vv~nlPy~  105 (244)
T 1qam_A           83 ------KDILQFKFPKNQSY-KIFGNIPYN  105 (244)
T ss_dssp             ------CCGGGCCCCSSCCC-EEEEECCGG
T ss_pred             ------ChHHhCCcccCCCe-EEEEeCCcc
Confidence                  6777776653 345 566665444

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.24  E-value=2.6e-11  Score=99.63  Aligned_cols=118  Identities=12%  Similarity=-0.012  Sum_probs=84.1

Q ss_pred             HHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhc
Q 024647           24 FKFITSKTTNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQN   94 (265)
Q Consensus        24 ~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~   94 (265)
                      ++.+....+++.+|||||||+|.++..+++.++  +|+|+|+++.+++.|++.       ..+.+..       +|..+.
T Consensus        12 L~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~-------gD~l~~   84 (244)
T 3gnl_A           12 LEKVASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRK-------GNGLAV   84 (244)
T ss_dssp             HHHHHTTCCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEE-------CSGGGG
T ss_pred             HHHHHHhCCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEe-------cchhhc
Confidence            456777778889999999999999999999874  699999999999999852       2367777       444444


Q ss_pred             cCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHhhcc
Q 024647           95 VAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQP  153 (265)
Q Consensus        95 ~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~~~  153 (265)
                      ..++++||+|+++...- --....+.+..+.|+ ++|.|++.....   ...+.+.+.+
T Consensus        85 ~~~~~~~D~IviagmGg-~lI~~IL~~~~~~L~-~~~~lIlq~~~~---~~~lr~~L~~  138 (244)
T 3gnl_A           85 IEKKDAIDTIVIAGMGG-TLIRTILEEGAAKLA-GVTKLILQPNIA---AWQLREWSEQ  138 (244)
T ss_dssp             CCGGGCCCEEEEEEECH-HHHHHHHHHTGGGGT-TCCEEEEEESSC---HHHHHHHHHH
T ss_pred             cCccccccEEEEeCCch-HHHHHHHHHHHHHhC-CCCEEEEEcCCC---hHHHHHHHHH
Confidence            33333699988643211 012367888899999 899999866431   3444444433

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.24  E-value=1.7e-11  Score=104.47  Aligned_cols=86  Identities=15%  Similarity=0.211  Sum_probs=64.8

Q ss_pred             cHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC------CCceEEecCCccchhhh
Q 024647           20 PEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAEL   91 (265)
Q Consensus        20 ~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d~   91 (265)
                      .+.+.+.+....  .++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.+++.      +++.+..       +|+
T Consensus        27 ~~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~-------~D~   99 (299)
T 2h1r_A           27 NPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGYNNLEVYE-------GDA   99 (299)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEC-----------C
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEE-------Cch
Confidence            455666665543  4668999999999999999999988999999999999988752      3555555       676


Q ss_pred             hhccCCCCceeEEEeccccccCC
Q 024647           92 EQNVAAQSTVDLVTIAQAMHWFD  114 (265)
Q Consensus        92 ~~~~~~~~~~Dlv~~~~~~~~~~  114 (265)
                      ..++.  ++||+|+++...+|..
T Consensus       100 ~~~~~--~~~D~Vv~n~py~~~~  120 (299)
T 2h1r_A          100 IKTVF--PKFDVCTANIPYKISS  120 (299)
T ss_dssp             CSSCC--CCCSEEEEECCGGGHH
T ss_pred             hhCCc--ccCCEEEEcCCccccc
Confidence            66643  4899999998888763

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.22  E-value=3e-11  Score=106.88  Aligned_cols=105  Identities=10%  Similarity=0.083  Sum_probs=78.5

Q ss_pred             HHHhhCCCCCeEEEEcCCcchhHHHHHhcC-CcEEEEcCCHHHHHHHHcC-------C-CceEEecCCccchhhhhhcc-
Q 024647           26 FITSKTTNHELAWDVGTGSGQAAASLSGIF-ENVIGTETSPKQIEFATKL-------P-NIRYELTSPAMSIAELEQNV-   95 (265)
Q Consensus        26 ~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~-------~-~~~~~~~~~~~~~~d~~~~~-   95 (265)
                      ++... .++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++.       . ++.+...       |+.++. 
T Consensus       214 ~l~~~-~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~-------D~~~~~~  285 (396)
T 3c0k_A          214 ATRRY-VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRD-------DVFKLLR  285 (396)
T ss_dssp             HHHHH-CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEES-------CHHHHHH
T ss_pred             HHHHh-hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEEC-------CHHHHHH
Confidence            34333 566899999999999999999986 4899999999999988752       2 5677774       443331 


Q ss_pred             ---CCCCceeEEEecccc---------ccC-ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           96 ---AAQSTVDLVTIAQAM---------HWF-DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        96 ---~~~~~~Dlv~~~~~~---------~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                         ...++||+|++....         +.. +...++.++.++|+ |||++++.+..
T Consensus       286 ~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~  341 (396)
T 3c0k_A          286 TYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLN-EGGILLTFSCS  341 (396)
T ss_dssp             HHHHTTCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEE-EEEEEEEEECC
T ss_pred             HHHhcCCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcC-CCcEEEEEeCC
Confidence               124689999997532         111 34578999999999 99999987765

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.22  E-value=3.7e-11  Score=104.02  Aligned_cols=101  Identities=16%  Similarity=0.168  Sum_probs=78.8

Q ss_pred             HHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCCC
Q 024647           26 FITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAAQ   98 (265)
Q Consensus        26 ~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~~   98 (265)
                      ++.....++.+|||+|||+|.++.. ++...+|+|+|+|+.+++.+++.       .++.+..       +|+.+..   
T Consensus       188 ~i~~~~~~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~-------~D~~~~~---  256 (336)
T 2yx1_A          188 RIMKKVSLNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPIL-------SDVREVD---  256 (336)
T ss_dssp             HHHHHCCTTCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE-------SCGGGCC---
T ss_pred             HHHHhcCCCCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE-------CChHHhc---
Confidence            3444556778999999999999999 88666899999999999988752       3577777       5555553   


Q ss_pred             CceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecCCC
Q 024647           99 STVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTVP  141 (265)
Q Consensus        99 ~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~~~  141 (265)
                      ++||+|+++...   ....++..+.++|+ |||.+++..+...
T Consensus       257 ~~fD~Vi~dpP~---~~~~~l~~~~~~L~-~gG~l~~~~~~~~  295 (336)
T 2yx1_A          257 VKGNRVIMNLPK---FAHKFIDKALDIVE-EGGVIHYYTIGKD  295 (336)
T ss_dssp             CCEEEEEECCTT---TGGGGHHHHHHHEE-EEEEEEEEEEESS
T ss_pred             CCCcEEEECCcH---hHHHHHHHHHHHcC-CCCEEEEEEeecC
Confidence            789999986421   12478999999999 9999988666543

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.22  E-value=2.2e-11  Score=103.24  Aligned_cols=87  Identities=14%  Similarity=0.133  Sum_probs=71.6

Q ss_pred             cHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc----CCCceEEecCCccchhhhhh
Q 024647           20 PEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK----LPNIRYELTSPAMSIAELEQ   93 (265)
Q Consensus        20 ~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~----~~~~~~~~~~~~~~~~d~~~   93 (265)
                      .+.+++.+....  .++++|||||||+|.+|..+++.+.+|+++|+++.|++.+++    .+++.++.       +|+.+
T Consensus        35 d~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~~~~~v~vi~-------gD~l~  107 (295)
T 3gru_A           35 DKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKELYNNIEIIW-------GDALK  107 (295)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHHHCSSEEEEE-------SCTTT
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhccCCCeEEEE-------Cchhh
Confidence            456777777664  466899999999999999999998899999999999998875    26778887       66677


Q ss_pred             ccCCCCceeEEEeccccccC
Q 024647           94 NVAAQSTVDLVTIAQAMHWF  113 (265)
Q Consensus        94 ~~~~~~~~Dlv~~~~~~~~~  113 (265)
                      +++++.+||.|+++...++.
T Consensus       108 ~~~~~~~fD~Iv~NlPy~is  127 (295)
T 3gru_A          108 VDLNKLDFNKVVANLPYQIS  127 (295)
T ss_dssp             SCGGGSCCSEEEEECCGGGH
T ss_pred             CCcccCCccEEEEeCccccc
Confidence            66666789999999777654

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.21  E-value=2.8e-11  Score=99.42  Aligned_cols=108  Identities=13%  Similarity=0.235  Sum_probs=82.6

Q ss_pred             HHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC-----CCceEEecCCccchhhhhh
Q 024647           21 EELFKFITSKTTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL-----PNIRYELTSPAMSIAELEQ   93 (265)
Q Consensus        21 ~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~d~~~   93 (265)
                      +.++..+....+++.+|||||||+|-++..++...  .+|+++|+++.|++.++++     .+..+..       .|...
T Consensus       120 D~fY~~i~~~i~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v-------~D~~~  192 (281)
T 3lcv_B          120 DEFYRELFRHLPRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNV-------ADLLE  192 (281)
T ss_dssp             HHHHHHHGGGSCCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEE-------CCTTT
T ss_pred             HHHHHHHHhccCCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEE-------eeecc
Confidence            45556666666778899999999999999998774  3799999999999988752     2344444       34333


Q ss_pred             ccCCCCceeEEEeccccccCChh---HHHHHHHHHhcCCCcEEEEEec
Q 024647           94 NVAAQSTVDLVTIAQAMHWFDLP---QFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        94 ~~~~~~~~Dlv~~~~~~~~~~~~---~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      - .+.+++|+++++-++|.++.+   ..+ ++...|+ |+|+++-...
T Consensus       193 ~-~p~~~~DvaL~lkti~~Le~q~kg~g~-~ll~aL~-~~~vvVSfp~  237 (281)
T 3lcv_B          193 D-RLDEPADVTLLLKTLPCLETQQRGSGW-EVIDIVN-SPNIVVTFPT  237 (281)
T ss_dssp             S-CCCSCCSEEEETTCHHHHHHHSTTHHH-HHHHHSS-CSEEEEEEEC
T ss_pred             c-CCCCCcchHHHHHHHHHhhhhhhHHHH-HHHHHhC-CCCEEEeccc
Confidence            3 367789999999999999433   455 9999999 9999886444

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.21  E-value=4.2e-11  Score=97.47  Aligned_cols=106  Identities=14%  Similarity=0.129  Sum_probs=79.0

Q ss_pred             HHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC-----CCceEEecCCccchhhhhhcc
Q 024647           21 EELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL-----PNIRYELTSPAMSIAELEQNV   95 (265)
Q Consensus        21 ~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~d~~~~~   95 (265)
                      +.++..+... +++.+|||||||+|.++..+. ...+|+|+|+|+.|++.+++.     .+..+..       .|+...+
T Consensus        94 d~fY~~i~~~-~~p~~VLDlGCG~gpLal~~~-~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v-------~D~~~~~  164 (253)
T 3frh_A           94 DTLYDFIFSA-ETPRRVLDIACGLNPLALYER-GIASVWGCDIHQGLGDVITPFAREKDWDFTFAL-------QDVLCAP  164 (253)
T ss_dssp             HHHHHHHTSS-CCCSEEEEETCTTTHHHHHHT-TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEE-------CCTTTSC
T ss_pred             HHHHHHHhcC-CCCCeEEEecCCccHHHHHhc-cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEE-------eecccCC
Confidence            3445555555 667899999999999999988 555899999999999998762     3444555       4555444


Q ss_pred             CCCCceeEEEeccccccCChh--HHHHHHHHHhcCCCcEEEEEe
Q 024647           96 AAQSTVDLVTIAQAMHWFDLP--QFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        96 ~~~~~~Dlv~~~~~~~~~~~~--~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                       +.+++|+|++.-++|.++..  ...-++...|+ ++|+++-..
T Consensus       165 -~~~~~DvvLllk~lh~LE~q~~~~~~~ll~aL~-~~~vvVsfP  206 (253)
T 3frh_A          165 -PAEAGDLALIFKLLPLLEREQAGSAMALLQSLN-TPRMAVSFP  206 (253)
T ss_dssp             -CCCBCSEEEEESCHHHHHHHSTTHHHHHHHHCB-CSEEEEEEE
T ss_pred             -CCCCcchHHHHHHHHHhhhhchhhHHHHHHHhc-CCCEEEEcC
Confidence             45699999999999988322  34448888999 898877544

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.20  E-value=1.1e-11  Score=104.00  Aligned_cols=101  Identities=14%  Similarity=0.136  Sum_probs=79.5

Q ss_pred             HHHhhCCCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCC
Q 024647           26 FITSKTTNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAA   97 (265)
Q Consensus        26 ~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~   97 (265)
                      ++.....++.+|||+|||+|.++..++++++ +|+++|+|+.+++.+++.       ..+.+.+       +|..++. .
T Consensus       118 ri~~~~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~-------~D~~~~~-~  189 (278)
T 3k6r_A          118 RMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYN-------MDNRDFP-G  189 (278)
T ss_dssp             HHHHHCCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEEC-------SCTTTCC-C
T ss_pred             HHHHhcCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEe-------CcHHHhc-c
Confidence            4556678889999999999999999999875 799999999999988752       2355655       5666654 5


Q ss_pred             CCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647           98 QSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        98 ~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      .+.||.|+++..   .....++..+.++|+ +||++.+...
T Consensus       190 ~~~~D~Vi~~~p---~~~~~~l~~a~~~lk-~gG~ih~~~~  226 (278)
T 3k6r_A          190 ENIADRILMGYV---VRTHEFIPKALSIAK-DGAIIHYHNT  226 (278)
T ss_dssp             CSCEEEEEECCC---SSGGGGHHHHHHHEE-EEEEEEEEEE
T ss_pred             ccCCCEEEECCC---CcHHHHHHHHHHHcC-CCCEEEEEee
Confidence            678999998742   134578999999999 9999876544

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.20  E-value=2.6e-13  Score=112.44  Aligned_cols=108  Identities=12%  Similarity=0.154  Sum_probs=78.5

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC----CCceEEecCCccchhhhhhc
Q 024647           21 EELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL----PNIRYELTSPAMSIAELEQN   94 (265)
Q Consensus        21 ~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~d~~~~   94 (265)
                      +.+++.+....  .++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.+++.    .++.+..       +|+.++
T Consensus        15 ~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~~~~~v~~~~-------~D~~~~   87 (245)
T 1yub_A           15 EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIH-------QDILQF   87 (245)
T ss_dssp             TTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTCSEEEECC-------SCCTTT
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhccCCceEEEE-------CChhhc
Confidence            34455555544  4567899999999999999999999999999999999988763    2344444       677777


Q ss_pred             cCCC-CceeEEEecccc------------ccCChhHHH----HHHHHHhcCCCcEEEEEe
Q 024647           95 VAAQ-STVDLVTIAQAM------------HWFDLPQFY----NQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        95 ~~~~-~~~Dlv~~~~~~------------~~~~~~~~l----~~~~~~Lk~pgG~l~~~~  137 (265)
                      +++. ++| .|+++...            |+.+...++    +.+.|+|+ |||.+.+..
T Consensus        88 ~~~~~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~-~~G~l~v~~  145 (245)
T 1yub_A           88 QFPNKQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLD-IHRTLGLLL  145 (245)
T ss_dssp             TCCCSSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHC-GGGSHHHHT
T ss_pred             CcccCCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhC-CCCchhhhh
Confidence            6553 678 67776422            322444555    77999999 999887643

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.19  E-value=1.8e-10  Score=100.42  Aligned_cols=96  Identities=19%  Similarity=0.288  Sum_probs=76.4

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcCCc--EEEEcCCHHHHHHHHcC------CCceEEecCCccchhhhhhccCCCCceeEE
Q 024647           33 NHELAWDVGTGSGQAAASLSGIFEN--VIGTETSPKQIEFATKL------PNIRYELTSPAMSIAELEQNVAAQSTVDLV  104 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~~--v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv  104 (265)
                      ...+|||||||+|.++..+++++++  ++..|. |.+++.+++.      .++++..       +|+...+.  ..+|++
T Consensus       179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~-------gD~~~~~~--~~~D~~  248 (353)
T 4a6d_A          179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQE-------GDFFKDPL--PEADLY  248 (353)
T ss_dssp             GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEE-------SCTTTSCC--CCCSEE
T ss_pred             cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeec-------CccccCCC--CCceEE
Confidence            4578999999999999999999885  677786 8889888752      4677777       56544333  358999


Q ss_pred             EeccccccC-Ch--hHHHHHHHHHhcCCCcEEEEEecC
Q 024647          105 TIAQAMHWF-DL--PQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       105 ~~~~~~~~~-~~--~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      ++..++|.. |.  ..+|++++++|+ |||.+++....
T Consensus       249 ~~~~vlh~~~d~~~~~iL~~~~~al~-pgg~lli~e~~  285 (353)
T 4a6d_A          249 ILARVLHDWADGKCSHLLERIYHTCK-PGGGILVIESL  285 (353)
T ss_dssp             EEESSGGGSCHHHHHHHHHHHHHHCC-TTCEEEEEECC
T ss_pred             EeeeecccCCHHHHHHHHHHHHhhCC-CCCEEEEEEee
Confidence            999999966 44  368999999999 99999987654

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.19  E-value=4.5e-11  Score=112.78  Aligned_cols=100  Identities=16%  Similarity=0.075  Sum_probs=77.6

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCCc-EEEEcCCHHHHHHHHcC--------CCceEEecCCccchhhhhh-ccCCCCce
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFEN-VIGTETSPKQIEFATKL--------PNIRYELTSPAMSIAELEQ-NVAAQSTV  101 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~~-v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~d~~~-~~~~~~~~  101 (265)
                      .++.+|||+|||+|.++..++..++. |++||+|+.+++.+++.        .++.+++       +|+.+ ++...++|
T Consensus       538 ~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~-------~D~~~~l~~~~~~f  610 (703)
T 3v97_A          538 SKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQ-------ADCLAWLREANEQF  610 (703)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEE-------SCHHHHHHHCCCCE
T ss_pred             cCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEe-------cCHHHHHHhcCCCc
Confidence            46689999999999999999988775 99999999999998752        2577777       44444 23345789


Q ss_pred             eEEEecccc-----------ccC-ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          102 DLVTIAQAM-----------HWF-DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       102 Dlv~~~~~~-----------~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      |+|+++...           +.. +...++..+.++|+ |||.|++.+..
T Consensus       611 D~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~Lk-pgG~L~~s~~~  659 (703)
T 3v97_A          611 DLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLR-AGGTIMFSNNK  659 (703)
T ss_dssp             EEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEE-EEEEEEEEECC
T ss_pred             cEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcC-CCcEEEEEECC
Confidence            999996521           222 45578999999999 99999986654

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.18  E-value=6.9e-11  Score=103.75  Aligned_cols=102  Identities=18%  Similarity=0.137  Sum_probs=76.9

Q ss_pred             CcHHHHHHHHhh-CCCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC-------CCceEEecCCccch
Q 024647           19 YPEELFKFITSK-TTNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL-------PNIRYELTSPAMSI   88 (265)
Q Consensus        19 y~~~l~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~   88 (265)
                      .++.+...+... ..++.+|||+|||+|.++..++..+.  +|+|+|+|+.|++.|++.       .++.+.+       
T Consensus       202 l~~~la~~l~~~~~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~-------  274 (373)
T 3tm4_A          202 LKASIANAMIELAELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQ-------  274 (373)
T ss_dssp             CCHHHHHHHHHHHTCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEE-------
T ss_pred             ccHHHHHHHHHhhcCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEE-------
Confidence            356666555433 35667899999999999999999887  899999999999998852       3567777       


Q ss_pred             hhhhhccCCCCceeEEEeccccccC--C-------hhHHHHHHHHHhc
Q 024647           89 AELEQNVAAQSTVDLVTIAQAMHWF--D-------LPQFYNQVKWVLK  127 (265)
Q Consensus        89 ~d~~~~~~~~~~~Dlv~~~~~~~~~--~-------~~~~l~~~~~~Lk  127 (265)
                      +|+.+++.++++||+|+++..++..  +       ...+++++.++|.
T Consensus       275 ~D~~~~~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l~  322 (373)
T 3tm4_A          275 GDATQLSQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVLE  322 (373)
T ss_dssp             CCGGGGGGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHEE
T ss_pred             CChhhCCcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHcC
Confidence            6677777777899999998765432  1       1456777777774

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.16  E-value=1.4e-10  Score=93.11  Aligned_cols=84  Identities=14%  Similarity=0.139  Sum_probs=67.3

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcCC-----CceEEecCCccchhhhhhccCCCCceeEEEe
Q 024647           33 NHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKLP-----NIRYELTSPAMSIAELEQNVAAQSTVDLVTI  106 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~-----~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~  106 (265)
                      ++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.+++..     ++.+..       +|+.+++   ++||+|++
T Consensus        49 ~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~-------~d~~~~~---~~~D~v~~  118 (207)
T 1wy7_A           49 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFI-------GDVSEFN---SRVDIVIM  118 (207)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEE-------SCGGGCC---CCCSEEEE
T ss_pred             CcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEE-------CchHHcC---CCCCEEEE
Confidence            567999999999999999998865 6999999999999987521     566776       5666653   48999999


Q ss_pred             ccccccCC---hhHHHHHHHHHh
Q 024647          107 AQAMHWFD---LPQFYNQVKWVL  126 (265)
Q Consensus       107 ~~~~~~~~---~~~~l~~~~~~L  126 (265)
                      +..+|+..   ...+++++.++|
T Consensus       119 ~~p~~~~~~~~~~~~l~~~~~~l  141 (207)
T 1wy7_A          119 NPPFGSQRKHADRPFLLKAFEIS  141 (207)
T ss_dssp             CCCCSSSSTTTTHHHHHHHHHHC
T ss_pred             cCCCccccCCchHHHHHHHHHhc
Confidence            99888763   236777777776

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.16  E-value=1.9e-10  Score=102.39  Aligned_cols=102  Identities=22%  Similarity=0.275  Sum_probs=75.0

Q ss_pred             HHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC---CC--ceEEecCCccchhhhhhccC
Q 024647           22 ELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL---PN--IRYELTSPAMSIAELEQNVA   96 (265)
Q Consensus        22 ~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---~~--~~~~~~~~~~~~~d~~~~~~   96 (265)
                      .+++++.. ..++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.|++.   .+  +.+..       +|+.++. 
T Consensus       280 ~l~~~~~~-~~~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~-------~d~~~~~-  350 (425)
T 2jjq_A          280 NLVRKVSE-LVEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVDAEFEV-------ASDREVS-  350 (425)
T ss_dssp             HHHHHHHH-HCCSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCEEEEE-------CCTTTCC-
T ss_pred             HHHHHhhc-cCCCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEE-------CChHHcC-
Confidence            44555555 46678999999999999999999988999999999999998752   11  66776       5555553 


Q ss_pred             CCCceeEEEeccccccCCh-hHHHHHHHHHhcCCCcEEEEEe
Q 024647           97 AQSTVDLVTIAQAMHWFDL-PQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        97 ~~~~~Dlv~~~~~~~~~~~-~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      +. +||+|+++..-  ... ..+++.+. .|+ |+|.+++.+
T Consensus       351 ~~-~fD~Vv~dPPr--~g~~~~~~~~l~-~l~-p~givyvsc  387 (425)
T 2jjq_A          351 VK-GFDTVIVDPPR--AGLHPRLVKRLN-REK-PGVIVYVSC  387 (425)
T ss_dssp             CT-TCSEEEECCCT--TCSCHHHHHHHH-HHC-CSEEEEEES
T ss_pred             cc-CCCEEEEcCCc--cchHHHHHHHHH-hcC-CCcEEEEEC
Confidence            22 89999986431  122 23555554 589 999998865

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.16  E-value=6.5e-11  Score=105.31  Aligned_cols=108  Identities=19%  Similarity=0.251  Sum_probs=83.1

Q ss_pred             cHHHHHHHHhhCC--CCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhc
Q 024647           20 PEELFKFITSKTT--NHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQN   94 (265)
Q Consensus        20 ~~~l~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   94 (265)
                      |+.+.+.+.....  ++.+|||+|||+|.++..++++.   .+++|+|+++.+++.|   .++.+..       +|+...
T Consensus        24 P~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---~~~~~~~-------~D~~~~   93 (421)
T 2ih2_A           24 PPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGIL-------ADFLLW   93 (421)
T ss_dssp             CHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEE-------SCGGGC
T ss_pred             CHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---CCCcEEe-------CChhhc
Confidence            6788888877653  46799999999999999999863   5799999999998877   4677777       555555


Q ss_pred             cCCCCceeEEEeccccccC-C---------h--------------------hHHHHHHHHHhcCCCcEEEEEecC
Q 024647           95 VAAQSTVDLVTIAQAMHWF-D---------L--------------------PQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        95 ~~~~~~~Dlv~~~~~~~~~-~---------~--------------------~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      . +.++||+|+++-.+... .         .                    ..++..+.++|+ |||.+++..+.
T Consensus        94 ~-~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk-~~G~~~~i~p~  166 (421)
T 2ih2_A           94 E-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLK-PGGVLVFVVPA  166 (421)
T ss_dssp             C-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEE-EEEEEEEEEEG
T ss_pred             C-ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhC-CCCEEEEEECh
Confidence            3 45689999997533211 1         1                    156889999999 99999987764

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.16  E-value=1e-10  Score=105.13  Aligned_cols=100  Identities=10%  Similarity=0.185  Sum_probs=75.8

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhcc--CCCCc
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQNV--AAQST  100 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~~--~~~~~  100 (265)
                      .++.+|||+|||+|..+..+++..   .+|+++|+|+.+++.+++      ..++.+..       +|+..++  +++++
T Consensus       258 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~-------~D~~~~~~~~~~~~  330 (450)
T 2yxl_A          258 KPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLV-------KDARKAPEIIGEEV  330 (450)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEEC-------SCTTCCSSSSCSSC
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEE-------cChhhcchhhccCC
Confidence            466799999999999999999865   579999999999998764      24666666       5555554  34478


Q ss_pred             eeEEEecc------ccccC-Ch----------------hHHHHHHHHHhcCCCcEEEEEecC
Q 024647          101 VDLVTIAQ------AMHWF-DL----------------PQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       101 ~Dlv~~~~------~~~~~-~~----------------~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      ||+|++.-      .++.. +.                ..+++++.++|| |||.+++.++.
T Consensus       331 fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lk-pGG~lvy~tcs  391 (450)
T 2yxl_A          331 ADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVK-PGGRLLYTTCS  391 (450)
T ss_dssp             EEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEE-EEEEEEEEESC
T ss_pred             CCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEEeCC
Confidence            99999732      22211 11                468999999999 99999987765

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=99.15  E-value=1.6e-10  Score=97.50  Aligned_cols=104  Identities=13%  Similarity=0.077  Sum_probs=74.1

Q ss_pred             CCCCeEEEEcC------CcchhHHHHHhc---CCcEEEEcCCHHHHHHHHcCCCceE-EecCCccchhhhhhccCCCCce
Q 024647           32 TNHELAWDVGT------GSGQAAASLSGI---FENVIGTETSPKQIEFATKLPNIRY-ELTSPAMSIAELEQNVAAQSTV  101 (265)
Q Consensus        32 ~~~~~vlDvGc------G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~  101 (265)
                      +++.+|||+||      |+|.  ..+++.   ..+|+|+|+|+.       .+++.+ .+       +|+.+++++ ++|
T Consensus        62 ~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------v~~v~~~i~-------gD~~~~~~~-~~f  124 (290)
T 2xyq_A           62 PYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------VSDADSTLI-------GDCATVHTA-NKW  124 (290)
T ss_dssp             CTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------BCSSSEEEE-------SCGGGCCCS-SCE
T ss_pred             CCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------CCCCEEEEE-------CccccCCcc-Ccc
Confidence            56789999999      5576  434444   357999999998       246777 77       667666543 689


Q ss_pred             eEEEeccccccC-----C-------hhHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHhhccc
Q 024647          102 DLVTIAQAMHWF-----D-------LPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQPF  154 (265)
Q Consensus       102 Dlv~~~~~~~~~-----~-------~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~~~~  154 (265)
                      |+|+++...++.     +       ...+++++.++|| |||.|++..+.... ...+.++++++
T Consensus       125 D~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~Lk-pGG~~v~~~~~~~~-~~~l~~~l~~~  187 (290)
T 2xyq_A          125 DLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLA-LGGSIAVKITEHSW-NADLYKLMGHF  187 (290)
T ss_dssp             EEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEE-EEEEEEEEECSSSC-CHHHHHHHTTE
T ss_pred             cEEEEcCCccccccccccccchHHHHHHHHHHHHHhcC-CCcEEEEEEeccCC-HHHHHHHHHHc
Confidence            999997654331     1       2378999999999 99999987665443 35666666654

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.14  E-value=1.5e-10  Score=104.56  Aligned_cols=99  Identities=14%  Similarity=0.244  Sum_probs=74.5

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhccC-CCCcee
Q 024647           33 NHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQNVA-AQSTVD  102 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D  102 (265)
                      ++.+|||+|||+|..|..+++..   ..|+++|+|+.+++.+++      ..++.+...       |+..++. .+++||
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~-------D~~~~~~~~~~~fD  189 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHF-------DGRVFGAAVPEMFD  189 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECC-------CSTTHHHHSTTCEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeC-------CHHHhhhhccccCC
Confidence            67899999999999999999874   479999999999998875      246777764       4444432 356899


Q ss_pred             EEEecc------ccc--------cCC---------hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          103 LVTIAQ------AMH--------WFD---------LPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       103 lv~~~~------~~~--------~~~---------~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +|++.-      .++        |-.         ...++.++.++|| |||+|++.+..
T Consensus       190 ~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lk-pGG~LvysTcs  248 (479)
T 2frx_A          190 AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALR-PGGTLVYSTCT  248 (479)
T ss_dssp             EEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEEEESC
T ss_pred             EEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcC-CCCEEEEeccc
Confidence            999842      121        110         1357899999999 99999987664

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.12  E-value=2.6e-10  Score=101.96  Aligned_cols=106  Identities=20%  Similarity=0.240  Sum_probs=75.9

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhh
Q 024647           21 EELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELE   92 (265)
Q Consensus        21 ~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~   92 (265)
                      +.+++.+....  .++.+|||+|||+|.++..+++...+|+|+|+|+.+++.|++      ..++.+..++       +.
T Consensus       272 e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d-------~~  344 (433)
T 1uwv_A          272 QKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHEN-------LE  344 (433)
T ss_dssp             HHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECC-------TT
T ss_pred             HHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECC-------HH
Confidence            34555555443  356789999999999999999998899999999999998875      2478888854       43


Q ss_pred             h----ccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647           93 Q----NVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        93 ~----~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      +    +++++++||+|+++..-.-.  ..+++.+. .++ |++++++.+
T Consensus       345 ~~l~~~~~~~~~fD~Vv~dPPr~g~--~~~~~~l~-~~~-p~~ivyvsc  389 (433)
T 1uwv_A          345 EDVTKQPWAKNGFDKVLLDPARAGA--AGVMQQII-KLE-PIRIVYVSC  389 (433)
T ss_dssp             SCCSSSGGGTTCCSEEEECCCTTCC--HHHHHHHH-HHC-CSEEEEEES
T ss_pred             HHhhhhhhhcCCCCEEEECCCCccH--HHHHHHHH-hcC-CCeEEEEEC
Confidence            3    33455689999986432222  24555444 378 888877754

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.11  E-value=1.8e-10  Score=99.99  Aligned_cols=98  Identities=15%  Similarity=0.115  Sum_probs=75.3

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcC-------CcEEEEcCCHHHHHHHHcC-----CCceEEecCCccchhhhhhccCCCCc
Q 024647           33 NHELAWDVGTGSGQAAASLSGIF-------ENVIGTETSPKQIEFATKL-----PNIRYELTSPAMSIAELEQNVAAQST  100 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~-------~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~d~~~~~~~~~~  100 (265)
                      ++.+|||+|||+|.++..+++..       .+++|+|+++.+++.|+..     .++.+..       +|.... ...++
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~-------~D~l~~-~~~~~  201 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLH-------QDGLAN-LLVDP  201 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEE-------SCTTSC-CCCCC
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEE-------CCCCCc-cccCC
Confidence            45789999999999999998765       5699999999999988751     2455665       443332 24578


Q ss_pred             eeEEEeccccccC-Ch------------------hHHHHHHHHHhcCCCcEEEEEecC
Q 024647          101 VDLVTIAQAMHWF-DL------------------PQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       101 ~Dlv~~~~~~~~~-~~------------------~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      ||+|+++..+++. +.                  ..++..+.+.|+ |||.+++..+.
T Consensus       202 fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk-~gG~~~~v~p~  258 (344)
T 2f8l_A          202 VDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTK-PGGYLFFLVPD  258 (344)
T ss_dssp             EEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEE-EEEEEEEEEEG
T ss_pred             ccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhC-CCCEEEEEECc
Confidence            9999999887654 21                  158999999999 99999987753

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.10  E-value=3.8e-10  Score=98.84  Aligned_cols=111  Identities=12%  Similarity=0.177  Sum_probs=80.2

Q ss_pred             HHHHHHHHhhCC-CCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhh-h
Q 024647           21 EELFKFITSKTT-NHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAEL-E   92 (265)
Q Consensus        21 ~~l~~~l~~~~~-~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~-~   92 (265)
                      +.+++++..... .+.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|++      ..++.+..++++    ++ .
T Consensus       200 ~~l~~~~~~~~~~~~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~----~~~~  275 (369)
T 3bt7_A          200 IQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAE----EFTQ  275 (369)
T ss_dssp             HHHHHHHHHHTTTCCSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSH----HHHH
T ss_pred             HHHHHHHHHHhhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHH----HHHH
Confidence            566777766653 35789999999999999999988899999999999998875      247788876552    21 1


Q ss_pred             hccCC------------CCceeEEEeccccccCChhH--HHHHHHHHhcCCCcEEEEEecCCCCC
Q 024647           93 QNVAA------------QSTVDLVTIAQAMHWFDLPQ--FYNQVKWVLKKPNGVIATWCYTVPEV  143 (265)
Q Consensus        93 ~~~~~------------~~~~Dlv~~~~~~~~~~~~~--~l~~~~~~Lk~pgG~l~~~~~~~~~~  143 (265)
                      .+...            +.+||+|++.       |+.  +..++.+.|+ ++|.+++...++.++
T Consensus       276 ~~~~~~~~~~l~~~~~~~~~fD~Vv~d-------PPr~g~~~~~~~~l~-~~g~ivyvsc~p~t~  332 (369)
T 3bt7_A          276 AMNGVREFNRLQGIDLKSYQCETIFVD-------PPRSGLDSETEKMVQ-AYPRILYISCNPETL  332 (369)
T ss_dssp             HHSSCCCCTTGGGSCGGGCCEEEEEEC-------CCTTCCCHHHHHHHT-TSSEEEEEESCHHHH
T ss_pred             HHhhccccccccccccccCCCCEEEEC-------cCccccHHHHHHHHh-CCCEEEEEECCHHHH
Confidence            11110            1379999864       332  4677888999 899888766654443

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.06  E-value=3e-10  Score=101.53  Aligned_cols=100  Identities=10%  Similarity=0.148  Sum_probs=74.6

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC-----CCceEEecCCccchhhhhhcc--CCCCcee
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL-----PNIRYELTSPAMSIAELEQNV--AAQSTVD  102 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~d~~~~~--~~~~~~D  102 (265)
                      .++.+|||+|||+|..+..+++.+  .+|+++|+++.+++.+++.     .++.+..       +|+...+  +++++||
T Consensus       245 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~-------~D~~~~~~~~~~~~fD  317 (429)
T 1sqg_A          245 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQ-------GDGRYPSQWCGEQQFD  317 (429)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEE-------CCTTCTHHHHTTCCEE
T ss_pred             CCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEe-------CchhhchhhcccCCCC
Confidence            466799999999999999999887  4799999999999987652     2456666       4444433  3457899


Q ss_pred             EEEecc------ccccC-Ch----------------hHHHHHHHHHhcCCCcEEEEEecC
Q 024647          103 LVTIAQ------AMHWF-DL----------------PQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       103 lv~~~~------~~~~~-~~----------------~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +|++..      .++.. +.                ..+++++.++|| |||.+++.+..
T Consensus       318 ~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~Lk-pGG~lvystcs  376 (429)
T 1sqg_A          318 RILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLK-TGGTLVYATCS  376 (429)
T ss_dssp             EEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEE-EEEEEEEEESC
T ss_pred             EEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEECC
Confidence            999743      22211 11                367999999999 99999987764

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.05  E-value=2.6e-10  Score=94.78  Aligned_cols=82  Identities=17%  Similarity=0.129  Sum_probs=62.9

Q ss_pred             cHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC----CCceEEecCCccchhhhhh
Q 024647           20 PEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL----PNIRYELTSPAMSIAELEQ   93 (265)
Q Consensus        20 ~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~d~~~   93 (265)
                      .+.+++.+....  .++.+|||||||+|.+|..+++++.+|+|+|+++.|++.+++.    +++.++.       +|+.+
T Consensus        14 d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~~~~v~~i~-------~D~~~   86 (255)
T 3tqs_A           14 DSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQQKNITIYQ-------NDALQ   86 (255)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTTCTTEEEEE-------SCTTT
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhhCCCcEEEE-------cchHh
Confidence            455666666554  4568899999999999999999999999999999999998752    5777777       55555


Q ss_pred             ccCC----CCceeEEEeccc
Q 024647           94 NVAA----QSTVDLVTIAQA  109 (265)
Q Consensus        94 ~~~~----~~~~Dlv~~~~~  109 (265)
                      ++++    +++|| |+++..
T Consensus        87 ~~~~~~~~~~~~~-vv~NlP  105 (255)
T 3tqs_A           87 FDFSSVKTDKPLR-VVGNLP  105 (255)
T ss_dssp             CCGGGSCCSSCEE-EEEECC
T ss_pred             CCHHHhccCCCeE-EEecCC
Confidence            5432    35688 777644

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.04  E-value=3.3e-10  Score=101.46  Aligned_cols=100  Identities=15%  Similarity=0.193  Sum_probs=74.4

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhcc-CCCCce
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQNV-AAQSTV  101 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~~-~~~~~~  101 (265)
                      .++.+|||+|||+|..|..+++..   .+|+++|+|+.+++.+++      ..++.+..       +|+..+. ..+++|
T Consensus       104 ~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~-------~Da~~l~~~~~~~F  176 (456)
T 3m4x_A          104 KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTN-------HAPAELVPHFSGFF  176 (456)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEEC-------CCHHHHHHHHTTCE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEe-------CCHHHhhhhccccC
Confidence            567899999999999999999863   479999999999998865      24666666       4444443 135789


Q ss_pred             eEEEecccc--------------ccC-C--------hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          102 DLVTIAQAM--------------HWF-D--------LPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       102 Dlv~~~~~~--------------~~~-~--------~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      |+|++.-..              +|. +        ...++.++.++|| |||+|+..+..
T Consensus       177 D~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lk-pGG~LvYsTCs  236 (456)
T 3m4x_A          177 DRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLK-NKGQLIYSTCT  236 (456)
T ss_dssp             EEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEE-EEEEEEEEESC
T ss_pred             CEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEEEee
Confidence            999985421              111 1        1167899999999 99999987664

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.04  E-value=4.8e-10  Score=93.88  Aligned_cols=85  Identities=14%  Similarity=0.115  Sum_probs=66.1

Q ss_pred             cHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC---CCceEEecCCccchhhhhhc
Q 024647           20 PEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL---PNIRYELTSPAMSIAELEQN   94 (265)
Q Consensus        20 ~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---~~~~~~~~~~~~~~~d~~~~   94 (265)
                      .+.+++.+....  .++ +|||||||+|.+|..+++++.+|+|+|+|+.|++.+++.   .++.++.       +|+.++
T Consensus        32 d~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~~~~v~vi~-------~D~l~~  103 (271)
T 3fut_A           32 SEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLSGLPVRLVF-------QDALLY  103 (271)
T ss_dssp             CHHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTTTSSEEEEE-------SCGGGS
T ss_pred             CHHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCCCCEEEEE-------CChhhC
Confidence            455666666553  455 999999999999999999999999999999999998752   3566666       677666


Q ss_pred             cCCC-CceeEEEecccccc
Q 024647           95 VAAQ-STVDLVTIAQAMHW  112 (265)
Q Consensus        95 ~~~~-~~~Dlv~~~~~~~~  112 (265)
                      ++++ ..+|.|+++...+.
T Consensus       104 ~~~~~~~~~~iv~NlPy~i  122 (271)
T 3fut_A          104 PWEEVPQGSLLVANLPYHI  122 (271)
T ss_dssp             CGGGSCTTEEEEEEECSSC
T ss_pred             ChhhccCccEEEecCcccc
Confidence            5543 26899999876554

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.03  E-value=3.9e-10  Score=101.14  Aligned_cols=99  Identities=17%  Similarity=0.203  Sum_probs=73.8

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC------CCceEEecCCccchhhhhhcc-CCCCce
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAELEQNV-AAQSTV  101 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d~~~~~-~~~~~~  101 (265)
                      .++.+|||+|||+|..+..+++..   .+|+++|+|+.+++.+++.      . +.+..       +|+..++ ..+++|
T Consensus       100 ~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~-------~Da~~l~~~~~~~F  171 (464)
T 3m6w_A          100 KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQ-------APPRALAEAFGTYF  171 (464)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEEC-------SCHHHHHHHHCSCE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEE-------CCHHHhhhhccccC
Confidence            467899999999999999999874   4699999999999988752      3 55555       5555543 135789


Q ss_pred             eEEEeccc------cc--------cCC---------hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          102 DLVTIAQA------MH--------WFD---------LPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       102 Dlv~~~~~------~~--------~~~---------~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      |+|++.-.      ++        |-.         ...+++++.++|| |||+|++.+..
T Consensus       172 D~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lk-pGG~LvysTCs  231 (464)
T 3m6w_A          172 HRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLG-PGGVLVYSTCT  231 (464)
T ss_dssp             EEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEE-EEEEEEEEESC
T ss_pred             CEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEEecc
Confidence            99996321      11        110         1468899999999 99999987664

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.97  E-value=2.1e-09  Score=96.49  Aligned_cols=111  Identities=14%  Similarity=0.161  Sum_probs=82.0

Q ss_pred             cHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhc---------------CCcEEEEcCCHHHHHHHHc------CC-
Q 024647           20 PEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGI---------------FENVIGTETSPKQIEFATK------LP-   75 (265)
Q Consensus        20 ~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~---------------~~~v~~vD~s~~~~~~a~~------~~-   75 (265)
                      |..+++.+....  .++.+|+|.|||+|.+...++++               ..+++|+|+++.+++.|+.      .. 
T Consensus       156 P~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~  235 (445)
T 2okc_A          156 PRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGT  235 (445)
T ss_dssp             CHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCS
T ss_pred             cHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Confidence            677777777654  34568999999999999988764               2579999999999998874      11 


Q ss_pred             -CceEEecCCccchhhhhhccCCCCceeEEEeccccccC---Ch---------------hHHHHHHHHHhcCCCcEEEEE
Q 024647           76 -NIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF---DL---------------PQFYNQVKWVLKKPNGVIATW  136 (265)
Q Consensus        76 -~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~---~~---------------~~~l~~~~~~Lk~pgG~l~~~  136 (265)
                       +.++..       +|....+ ..++||+|+++..++..   +.               ..+++.+.++|+ |||++++.
T Consensus       236 ~~~~i~~-------gD~l~~~-~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk-~gG~~a~V  306 (445)
T 2okc_A          236 DRSPIVC-------EDSLEKE-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLK-TGGRAAVV  306 (445)
T ss_dssp             SCCSEEE-------CCTTTSC-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEE-EEEEEEEE
T ss_pred             CCCCEee-------CCCCCCc-ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhc-cCCEEEEE
Confidence             445555       4444333 23489999999765432   11               278999999999 99999887


Q ss_pred             ecC
Q 024647          137 CYT  139 (265)
Q Consensus       137 ~~~  139 (265)
                      .+.
T Consensus       307 ~p~  309 (445)
T 2okc_A          307 LPD  309 (445)
T ss_dssp             EEH
T ss_pred             ECC
Confidence            753

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.97  E-value=6.1e-09  Score=87.63  Aligned_cols=114  Identities=15%  Similarity=0.181  Sum_probs=84.1

Q ss_pred             CcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC-----------CCceEEecCCc
Q 024647           19 YPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL-----------PNIRYELTSPA   85 (265)
Q Consensus        19 y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-----------~~~~~~~~~~~   85 (265)
                      |.+.+........+.+.+||-||.|.|..++.++++.  .+|+.||+++.+++.+++.           ++++....++ 
T Consensus        69 YhE~l~h~~l~~~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg-  147 (294)
T 3o4f_A           69 YHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDG-  147 (294)
T ss_dssp             HHHHHHHHHHHHSSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCT-
T ss_pred             HHHHHHHHHHhhCCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechH-
Confidence            4455555444455778999999999999999999874  4799999999999988752           4566776443 


Q ss_pred             cchhhhhhccCCCCceeEEEeccccccC-----ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           86 MSIAELEQNVAAQSTVDLVTIAQAMHWF-----DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        86 ~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-----~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                           .+.+....++||+|+....-..-     -...+++.+.++|+ |||+++.+...
T Consensus       148 -----~~~l~~~~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~-p~Gv~v~q~~s  200 (294)
T 3o4f_A          148 -----VNFVNQTSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLN-PGGIFVAQNGV  200 (294)
T ss_dssp             -----TTTTSCSSCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEE-EEEEEEEEEEE
T ss_pred             -----HHHHhhccccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhC-CCCEEEEecCC
Confidence                 12233456789999986532211     13479999999999 99999987654

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.93  E-value=9.7e-10  Score=90.86  Aligned_cols=111  Identities=13%  Similarity=-0.023  Sum_probs=75.1

Q ss_pred             HHHHHHHHhhC-CCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC----CCceEEecCCccchhhhhh
Q 024647           21 EELFKFITSKT-TNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL----PNIRYELTSPAMSIAELEQ   93 (265)
Q Consensus        21 ~~l~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~d~~~   93 (265)
                      -+|.+...... .+..+|||+|||+|.+++.++++.  ..+.|+|++..+.......    .++.....       +++.
T Consensus        61 ~KL~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~-------~~dv  133 (277)
T 3evf_A           61 AKLRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKD-------KTDI  133 (277)
T ss_dssp             HHHHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEEC-------SCCT
T ss_pred             HHHHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEec-------ccee
Confidence            36666665543 566789999999999999888763  3688888885541111111    13343442       2233


Q ss_pred             ccCCCCceeEEEeccccc----cCChhH---HHHHHHHHhcCCC-cEEEEEecC
Q 024647           94 NVAAQSTVDLVTIAQAMH----WFDLPQ---FYNQVKWVLKKPN-GVIATWCYT  139 (265)
Q Consensus        94 ~~~~~~~~Dlv~~~~~~~----~~~~~~---~l~~~~~~Lk~pg-G~l~~~~~~  139 (265)
                      ..++++++|+|+|..+.+    |.|...   +++.+.++|+ || |.|++-.+.
T Consensus       134 ~~l~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~Lk-pG~G~FV~KVf~  186 (277)
T 3evf_A          134 HRLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLA-CGVDNFCVKVLA  186 (277)
T ss_dssp             TTSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHT-TCCSEEEEEESC
T ss_pred             hhcCCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhC-CCCCeEEEEecC
Confidence            345678999999988666    555433   5688899999 99 999986655

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.92  E-value=8.9e-09  Score=90.74  Aligned_cols=113  Identities=17%  Similarity=0.162  Sum_probs=81.6

Q ss_pred             CCcHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCC---------------------------------------
Q 024647           18 NYPEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFE---------------------------------------   56 (265)
Q Consensus        18 ~y~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~---------------------------------------   56 (265)
                      ...+.+...+....  .++..+||.+||+|.++..++....                                       
T Consensus       184 pl~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~  263 (393)
T 3k0b_A          184 PIKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQP  263 (393)
T ss_dssp             SCCHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCC
T ss_pred             CCcHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCC
Confidence            34566766665554  4567899999999999988876433                                       


Q ss_pred             -cEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCCCCceeEEEecccccc-C----ChhHHHHHHH
Q 024647           57 -NVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHW-F----DLPQFYNQVK  123 (265)
Q Consensus        57 -~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~-~----~~~~~l~~~~  123 (265)
                       +|+|+|+|+.|++.|+..       .++.+.+       +|+.+++. .++||+|+++..+.. +    +...++.++.
T Consensus       264 ~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~-------~D~~~~~~-~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg  335 (393)
T 3k0b_A          264 LNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQ-------LQVADFQT-EDEYGVVVANPPYGERLEDEEAVRQLYREMG  335 (393)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEE-------CCGGGCCC-CCCSCEEEECCCCCCSHHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEE-------CChHhCCC-CCCCCEEEECCCCccccCCchhHHHHHHHHH
Confidence             499999999999998752       2467777       66677654 358999999965432 2    2335677777


Q ss_pred             HHhcCC--CcEEEEEecC
Q 024647          124 WVLKKP--NGVIATWCYT  139 (265)
Q Consensus       124 ~~Lk~p--gG~l~~~~~~  139 (265)
                      +.|+ +  ||.+++.+..
T Consensus       336 ~~lk-~~~g~~~~iit~~  352 (393)
T 3k0b_A          336 IVYK-RMPTWSVYVLTSY  352 (393)
T ss_dssp             HHHH-TCTTCEEEEEECC
T ss_pred             HHHh-cCCCCEEEEEECC
Confidence            7887 6  8888876654

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.91  E-value=1.6e-09  Score=91.20  Aligned_cols=82  Identities=9%  Similarity=0.010  Sum_probs=60.9

Q ss_pred             cHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCc----EEEEcCCHHHHHHHHcC--CCceEEecCCccchhhh
Q 024647           20 PEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFEN----VIGTETSPKQIEFATKL--PNIRYELTSPAMSIAEL   91 (265)
Q Consensus        20 ~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~----v~~vD~s~~~~~~a~~~--~~~~~~~~~~~~~~~d~   91 (265)
                      .+.+++.+....  .++.+|||||||+|.+|..|++++.+    |+|+|+|+.|++.+++.  .++.++.       +|+
T Consensus        27 d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~-------~D~   99 (279)
T 3uzu_A           27 DHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHA-------GDA   99 (279)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEE-------SCG
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEE-------CCh
Confidence            455666666553  46789999999999999999998887    99999999999999763  4667777       566


Q ss_pred             hhccCCCC------ceeEEEecc
Q 024647           92 EQNVAAQS------TVDLVTIAQ  108 (265)
Q Consensus        92 ~~~~~~~~------~~Dlv~~~~  108 (265)
                      .++++++-      ..+.|+++.
T Consensus       100 ~~~~~~~~~~~~~~~~~~vv~Nl  122 (279)
T 3uzu_A          100 LTFDFGSIARPGDEPSLRIIGNL  122 (279)
T ss_dssp             GGCCGGGGSCSSSSCCEEEEEEC
T ss_pred             hcCChhHhcccccCCceEEEEcc
Confidence            66554321      234667664

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=98.90  E-value=5.1e-09  Score=90.69  Aligned_cols=104  Identities=14%  Similarity=0.213  Sum_probs=75.2

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhc----------------CC--cEEEEcCCHHHHHHHHc-CC------CceEEecCCcc
Q 024647           32 TNHELAWDVGTGSGQAAASLSGI----------------FE--NVIGTETSPKQIEFATK-LP------NIRYELTSPAM   86 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~----------------~~--~v~~vD~s~~~~~~a~~-~~------~~~~~~~~~~~   86 (265)
                      +...+|+|+||++|..|..+...                .+  +|+..|........+-+ ++      +..|..+-+  
T Consensus        50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvp--  127 (359)
T 1m6e_X           50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVP--  127 (359)
T ss_dssp             SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEE--
T ss_pred             CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecc--
Confidence            34467999999999888876532                12  48899999988887644 22      223444322  


Q ss_pred             chhhhhhccCCCCceeEEEeccccccC-Chh---------------------------------HHHHHHHHHhcCCCcE
Q 024647           87 SIAELEQNVAAQSTVDLVTIAQAMHWF-DLP---------------------------------QFYNQVKWVLKKPNGV  132 (265)
Q Consensus        87 ~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~---------------------------------~~l~~~~~~Lk~pgG~  132 (265)
                        +.+..-.+|++++|+|+++.++||+ +.+                                 .+|+..++.|+ |||.
T Consensus       128 --gSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~-pGG~  204 (359)
T 1m6e_X          128 --GSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVV-PGGR  204 (359)
T ss_dssp             --SCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBC-TTCE
T ss_pred             --hhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCce
Confidence              4455556899999999999999998 322                                 23888899999 9999


Q ss_pred             EEEEecCC
Q 024647          133 IATWCYTV  140 (265)
Q Consensus       133 l~~~~~~~  140 (265)
                      +++...+.
T Consensus       205 mvl~~~gr  212 (359)
T 1m6e_X          205 MVLTILGR  212 (359)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEecC
Confidence            99866643

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.90  E-value=6.4e-09  Score=91.47  Aligned_cols=113  Identities=14%  Similarity=0.134  Sum_probs=82.8

Q ss_pred             CCcHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcC----------------------------------------
Q 024647           18 NYPEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIF----------------------------------------   55 (265)
Q Consensus        18 ~y~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~----------------------------------------   55 (265)
                      ...+.+...+....  .++..+||.+||+|.++..++...                                        
T Consensus       178 pl~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~  257 (385)
T 3ldu_A          178 PIRETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESK  257 (385)
T ss_dssp             CCCHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCC
T ss_pred             CCcHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCC
Confidence            34566777666554  356789999999999999887653                                        


Q ss_pred             CcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCCCCceeEEEecccccc-C----ChhHHHHHHH
Q 024647           56 ENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHW-F----DLPQFYNQVK  123 (265)
Q Consensus        56 ~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~-~----~~~~~l~~~~  123 (265)
                      .+|+|+|+++.|++.|+..       .++.+.+       +|+.+++. .++||+|+++-.+.. .    +...+++++.
T Consensus       258 ~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~-------~D~~~l~~-~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg  329 (385)
T 3ldu_A          258 FKIYGYDIDEESIDIARENAEIAGVDEYIEFNV-------GDATQFKS-EDEFGFIITNPPYGERLEDKDSVKQLYKELG  329 (385)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEE-------CCGGGCCC-SCBSCEEEECCCCCCSHHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEE-------CChhhcCc-CCCCcEEEECCCCcCccCCHHHHHHHHHHHH
Confidence            3599999999999998752       2467777       66666653 458999999876542 2    2345777888


Q ss_pred             HHhcCC--CcEEEEEecC
Q 024647          124 WVLKKP--NGVIATWCYT  139 (265)
Q Consensus       124 ~~Lk~p--gG~l~~~~~~  139 (265)
                      ++|+ +  ||.+.+.+..
T Consensus       330 ~~lk-~~~g~~~~iit~~  346 (385)
T 3ldu_A          330 YAFR-KLKNWSYYLITSY  346 (385)
T ss_dssp             HHHH-TSBSCEEEEEESC
T ss_pred             HHHh-hCCCCEEEEEECC
Confidence            8888 6  8888776654

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.90  E-value=1.7e-09  Score=89.71  Aligned_cols=80  Identities=9%  Similarity=-0.076  Sum_probs=57.0

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCc--EEEEcCCHHHHHHHHcC----CCceEEecCCccchhhhh
Q 024647           21 EELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFEN--VIGTETSPKQIEFATKL----PNIRYELTSPAMSIAELE   92 (265)
Q Consensus        21 ~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~--v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~d~~   92 (265)
                      +.+.+.+....  .++.+|||||||+|.+|. +. ++++  |+++|+++.|++.+++.    ++++++.       +|+.
T Consensus         7 ~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~-------~D~~   77 (252)
T 1qyr_A            7 QFVIDSIVSAINPQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQ-------QDAM   77 (252)
T ss_dssp             HHHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEEC-------SCGG
T ss_pred             HHHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEE-------Cchh
Confidence            44555555443  456789999999999999 65 5677  99999999999999863    2566666       5555


Q ss_pred             hccCCC-----CceeEEEeccc
Q 024647           93 QNVAAQ-----STVDLVTIAQA  109 (265)
Q Consensus        93 ~~~~~~-----~~~Dlv~~~~~  109 (265)
                      ++++++     +..|.|+++..
T Consensus        78 ~~~~~~~~~~~~~~~~vvsNlP   99 (252)
T 1qyr_A           78 TFNFGELAEKMGQPLRVFGNLP   99 (252)
T ss_dssp             GCCHHHHHHHHTSCEEEEEECC
T ss_pred             hCCHHHhhcccCCceEEEECCC
Confidence            554321     23577887765

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.87  E-value=2.5e-09  Score=98.92  Aligned_cols=120  Identities=13%  Similarity=0.149  Sum_probs=82.8

Q ss_pred             hHHHHHHHHHhhhCCCCcHHHHHHHHhhCC---CCCeEEEEcCCcchhHHHHHh----cC-----------CcEEEEcCC
Q 024647            3 ELFIKQAKQYAETRPNYPEELFKFITSKTT---NHELAWDVGTGSGQAAASLSG----IF-----------ENVIGTETS   64 (265)
Q Consensus         3 ~~f~~~a~~Y~~~rp~y~~~l~~~l~~~~~---~~~~vlDvGcG~G~~~~~l~~----~~-----------~~v~~vD~s   64 (265)
                      +.|.++.-.|++    |-..+.+.+.....   ....|||||||+|.++...+.    .+           .+|+|||.|
T Consensus       380 e~fekD~vRy~~----Y~~AI~~al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEkn  455 (745)
T 3ua3_A          380 NTFEQDQIKYDV----YGEAVVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKN  455 (745)
T ss_dssp             HHHHHCHHHHHH----HHHHHHHHHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECC
T ss_pred             HHHcCChhhHHH----HHHHHHHHHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCC
Confidence            568888888888    44555555544332   246899999999999754322    11           279999999


Q ss_pred             HHHHHHHHc-----C-CCceEEecCCccchhhhhhccCC-----CCceeEEEeccccccCChh---HHHHHHHHHhcCCC
Q 024647           65 PKQIEFATK-----L-PNIRYELTSPAMSIAELEQNVAA-----QSTVDLVTIAQAMHWFDLP---QFYNQVKWVLKKPN  130 (265)
Q Consensus        65 ~~~~~~a~~-----~-~~~~~~~~~~~~~~~d~~~~~~~-----~~~~Dlv~~~~~~~~~~~~---~~l~~~~~~Lk~pg  130 (265)
                      +..+..++.     . ..++++.       +|++++.++     .+.+|+|++-+.-...+.+   ..+..+.+.|| ||
T Consensus       456 p~A~~~l~~~~~Ng~~d~VtVI~-------gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lk-p~  527 (745)
T 3ua3_A          456 PNAIVTLKYMNVRTWKRRVTIIE-------SDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLK-PT  527 (745)
T ss_dssp             HHHHHHHHHHHHHTTTTCSEEEE-------SCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSC-TT
T ss_pred             hHHHHHHHHHHhcCCCCeEEEEe-------CchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCC-CC
Confidence            976654432     2 3477777       566666543     5789999998754333333   67888889999 99


Q ss_pred             cEEE
Q 024647          131 GVIA  134 (265)
Q Consensus       131 G~l~  134 (265)
                      |+++
T Consensus       528 Gi~i  531 (745)
T 3ua3_A          528 TISI  531 (745)
T ss_dssp             CEEE
T ss_pred             cEEE
Confidence            9876

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.87  E-value=1.1e-08  Score=84.54  Aligned_cols=84  Identities=13%  Similarity=0.056  Sum_probs=61.1

Q ss_pred             cHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcC-CcEEEEcCCHHHHHHHHcC--CCceEEecCCccchhhhhhc
Q 024647           20 PEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIF-ENVIGTETSPKQIEFATKL--PNIRYELTSPAMSIAELEQN   94 (265)
Q Consensus        20 ~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~--~~~~~~~~~~~~~~~d~~~~   94 (265)
                      .+.+++.+....  .++.+|||+|||+|.+|..+++++ .+|+|+|+|+.|++.+++.  .+++++.       +|+.++
T Consensus        16 d~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~~~~~v~~i~-------~D~~~~   88 (249)
T 3ftd_A           16 SEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSIGDERLEVIN-------EDASKF   88 (249)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTSCCTTEEEEC-------SCTTTC
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhccCCCeEEEE-------cchhhC
Confidence            456677776664  356899999999999999999995 7899999999999999864  2445555       676666


Q ss_pred             cCCCCc-eeEEEecccc
Q 024647           95 VAAQST-VDLVTIAQAM  110 (265)
Q Consensus        95 ~~~~~~-~Dlv~~~~~~  110 (265)
                      ++++.. ...|+++...
T Consensus        89 ~~~~~~~~~~vv~NlPy  105 (249)
T 3ftd_A           89 PFCSLGKELKVVGNLPY  105 (249)
T ss_dssp             CGGGSCSSEEEEEECCT
T ss_pred             ChhHccCCcEEEEECch
Confidence            544311 2356666443

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.87  E-value=1.6e-09  Score=90.23  Aligned_cols=75  Identities=20%  Similarity=0.233  Sum_probs=56.5

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCH-------HHHHHHHcC-------CCceEEecCCccchhhhhhc-c-
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFENVIGTETSP-------KQIEFATKL-------PNIRYELTSPAMSIAELEQN-V-   95 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~-------~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~-~-   95 (265)
                      .++.+|||+|||+|..+..+++.+.+|+++|+|+       .+++.+++.       .++.+..+       |+.++ + 
T Consensus        82 ~~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~-------d~~~~l~~  154 (258)
T 2r6z_A           82 TAHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFG-------NAAEQMPA  154 (258)
T ss_dssp             GGCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEES-------CHHHHHHH
T ss_pred             CCcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEEC-------CHHHHHHh
Confidence            3457899999999999999999989999999999       999888652       23778774       44442 1 


Q ss_pred             CCC--CceeEEEeccccccC
Q 024647           96 AAQ--STVDLVTIAQAMHWF  113 (265)
Q Consensus        96 ~~~--~~~Dlv~~~~~~~~~  113 (265)
                      +++  ++||+|+++..+++.
T Consensus       155 ~~~~~~~fD~V~~dP~~~~~  174 (258)
T 2r6z_A          155 LVKTQGKPDIVYLDPMYPER  174 (258)
T ss_dssp             HHHHHCCCSEEEECCCC---
T ss_pred             hhccCCCccEEEECCCCCCc
Confidence            233  689999998766543

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.85  E-value=2e-08  Score=88.23  Aligned_cols=112  Identities=14%  Similarity=0.095  Sum_probs=82.0

Q ss_pred             CcHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCC----------------------------------------
Q 024647           19 YPEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFE----------------------------------------   56 (265)
Q Consensus        19 y~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~----------------------------------------   56 (265)
                      ..+.+...+....  .++..+||.+||+|.+...++....                                        
T Consensus       178 l~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~  257 (384)
T 3ldg_A          178 IKENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQL  257 (384)
T ss_dssp             CCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCC
T ss_pred             CcHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCc
Confidence            4566766665543  4567899999999999998875433                                        


Q ss_pred             cEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCCCCceeEEEecccccc-C-C---hhHHHHHHHH
Q 024647           57 NVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHW-F-D---LPQFYNQVKW  124 (265)
Q Consensus        57 ~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~-~-~---~~~~l~~~~~  124 (265)
                      +|+|+|+|+.|++.|+..       ..+.+.+       +|+.+++.+ ++||+|+++-..+. + +   ...+++++.+
T Consensus       258 ~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~-------~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~  329 (384)
T 3ldg_A          258 DISGFDFDGRMVEIARKNAREVGLEDVVKLKQ-------MRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGE  329 (384)
T ss_dssp             CEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE-------CCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCCCCceEEEE-------CChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHH
Confidence            499999999999998752       2367777       666777543 58999999975542 2 2   3457777888


Q ss_pred             HhcCC--CcEEEEEecC
Q 024647          125 VLKKP--NGVIATWCYT  139 (265)
Q Consensus       125 ~Lk~p--gG~l~~~~~~  139 (265)
                      .|| +  ||.+++.+..
T Consensus       330 ~lk-~~~g~~~~iit~~  345 (384)
T 3ldg_A          330 TFA-PLKTWSQFILTND  345 (384)
T ss_dssp             HHT-TCTTSEEEEEESC
T ss_pred             HHh-hCCCcEEEEEECC
Confidence            887 6  8888887764

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.84  E-value=9.4e-09  Score=89.76  Aligned_cols=104  Identities=13%  Similarity=0.096  Sum_probs=74.5

Q ss_pred             CCeEEEEcCCcchhHHHHHhc-----------------CC--cEEEEcCC-----------HHHHHHHHc-C---CCceE
Q 024647           34 HELAWDVGTGSGQAAASLSGI-----------------FE--NVIGTETS-----------PKQIEFATK-L---PNIRY   79 (265)
Q Consensus        34 ~~~vlDvGcG~G~~~~~l~~~-----------------~~--~v~~vD~s-----------~~~~~~a~~-~---~~~~~   79 (265)
                      ..+|+|+||++|..|..+...                 .+  +|+..|+-           +.+.+.+++ .   .+..|
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f  132 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL  132 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence            578999999999999887643                 12  37788887           666554432 1   23455


Q ss_pred             EecCCccchhhhhhccCCCCceeEEEeccccccC-ChhH------------------------H---------------H
Q 024647           80 ELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQ------------------------F---------------Y  119 (265)
Q Consensus        80 ~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~~------------------------~---------------l  119 (265)
                      ..+-+    +.+..-.+|++++|+|+++.++||+ +.+.                        +               |
T Consensus       133 ~~gvp----gSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL  208 (384)
T 2efj_A          133 IGAMP----GSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFL  208 (384)
T ss_dssp             EEECC----SCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecc----hhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence            55544    5666666899999999999999998 4321                        1               4


Q ss_pred             HHHHHHhcCCCcEEEEEecCCCC
Q 024647          120 NQVKWVLKKPNGVIATWCYTVPE  142 (265)
Q Consensus       120 ~~~~~~Lk~pgG~l~~~~~~~~~  142 (265)
                      +..++.|+ |||.+++...+.+.
T Consensus       209 ~~Ra~eL~-pGG~mvl~~~gr~~  230 (384)
T 2efj_A          209 RIHSEELI-SRGRMLLTFICKED  230 (384)
T ss_dssp             HHHHHHEE-EEEEEEEEEECCCT
T ss_pred             HHHHHHhc-cCCeEEEEEecCCC
Confidence            45589999 99999987776544

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.77  E-value=7.7e-09  Score=87.84  Aligned_cols=86  Identities=14%  Similarity=0.217  Sum_probs=63.4

Q ss_pred             hCCCCcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC-----CCceEEecCCccc
Q 024647           15 TRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL-----PNIRYELTSPAMS   87 (265)
Q Consensus        15 ~rp~y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~   87 (265)
                      +.|...+++++.+.  ..++.+|||+|||+|..+..+++++  .+|+|+|+|+.|++.|++.     .++.++.++.   
T Consensus        10 h~pvLl~e~l~~L~--~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~---   84 (301)
T 1m6y_A           10 HIPVMVREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSY---   84 (301)
T ss_dssp             CCCTTHHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCG---
T ss_pred             ccHHHHHHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCH---
Confidence            45555566666553  2466899999999999999999885  5899999999999998752     4677777544   


Q ss_pred             hhhhhhcc--C---CCCceeEEEeccc
Q 024647           88 IAELEQNV--A---AQSTVDLVTIAQA  109 (265)
Q Consensus        88 ~~d~~~~~--~---~~~~~Dlv~~~~~  109 (265)
                          .+++  +   ..++||.|++...
T Consensus        85 ----~~l~~~l~~~g~~~~D~Vl~D~g  107 (301)
T 1m6y_A           85 ----READFLLKTLGIEKVDGILMDLG  107 (301)
T ss_dssp             ----GGHHHHHHHTTCSCEEEEEEECS
T ss_pred             ----HHHHHHHHhcCCCCCCEEEEcCc
Confidence                3332  1   1257999998653

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.74  E-value=1e-08  Score=94.75  Aligned_cols=118  Identities=19%  Similarity=0.339  Sum_probs=81.5

Q ss_pred             hHHHHHHHHHhhhCCCCcHHHHHHHHhhC------CCCCeEEEEcCCcchhHHHHHh---cCC---cEEEEcCCHHHHHH
Q 024647            3 ELFIKQAKQYAETRPNYPEELFKFITSKT------TNHELAWDVGTGSGQAAASLSG---IFE---NVIGTETSPKQIEF   70 (265)
Q Consensus         3 ~~f~~~a~~Y~~~rp~y~~~l~~~l~~~~------~~~~~vlDvGcG~G~~~~~l~~---~~~---~v~~vD~s~~~~~~   70 (265)
                      +.|+++.-.|++    |-..+.+.|....      .+..+|||||||+|.+....++   +..   +|++||.|+. ...
T Consensus       325 evFEkD~vKy~~----Ye~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~-A~~  399 (637)
T 4gqb_A          325 EVFEKDPIKYSQ----YQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN-AVV  399 (637)
T ss_dssp             HHHTTCHHHHHH----HHHHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH-HHH
T ss_pred             hhhcCChhhHHH----HHHHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH-HHH
Confidence            578888889988    5556666665432      1335799999999998655543   332   5899999985 444


Q ss_pred             HHcC-------CCceEEecCCccchhhhhhccCCCCceeEEEeccccccCC---hhHHHHHHHHHhcCCCcEEE
Q 024647           71 ATKL-------PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFD---LPQFYNQVKWVLKKPNGVIA  134 (265)
Q Consensus        71 a~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~---~~~~l~~~~~~Lk~pgG~l~  134 (265)
                      +++.       ..|+.+.       +|++++.+| +++|+|++-+.-....   ...++....|.|| |||.++
T Consensus       400 a~~~v~~N~~~dkVtVI~-------gd~eev~LP-EKVDIIVSEwMG~fLl~E~mlevL~Ardr~LK-PgGimi  464 (637)
T 4gqb_A          400 TLENWQFEEWGSQVTVVS-------SDMREWVAP-EKADIIVSELLGSFADNELSPECLDGAQHFLK-DDGVSI  464 (637)
T ss_dssp             HHHHHHHHTTGGGEEEEE-------SCTTTCCCS-SCEEEEECCCCBTTBGGGCHHHHHHHHGGGEE-EEEEEE
T ss_pred             HHHHHHhccCCCeEEEEe-------CcceeccCC-cccCEEEEEcCcccccccCCHHHHHHHHHhcC-CCcEEc
Confidence            4431       3466666       777887654 7899999966332222   2357778889999 999875

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.73  E-value=6.7e-08  Score=77.00  Aligned_cols=113  Identities=8%  Similarity=0.015  Sum_probs=77.4

Q ss_pred             CCcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhc-CCcEEEEcCCHHHHHHHHcC---------CCceEEecCCccc
Q 024647           18 NYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGI-FENVIGTETSPKQIEFATKL---------PNIRYELTSPAMS   87 (265)
Q Consensus        18 ~y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~---------~~~~~~~~~~~~~   87 (265)
                      .+++...++|.....+.++|||+||  |..|..+++. ..+|+.||.++.+.+.+++.         .++++..+++.-.
T Consensus        15 ~v~~~~~~~L~~~l~~a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~   92 (202)
T 3cvo_A           15 TMPPAEAEALRMAYEEAEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPT   92 (202)
T ss_dssp             CSCHHHHHHHHHHHHHCSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSB
T ss_pred             cCCHHHHHHHHHHhhCCCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhh
Confidence            4567777777665566789999998  4788888875 57899999999999988751         2467777554110


Q ss_pred             h-----------hhhhhc-----cC-CCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647           88 I-----------AELEQN-----VA-AQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        88 ~-----------~d~~~~-----~~-~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      .           ..+..+     .. ..++||+|+.....    ....+..+.+.|+ |||++++-+
T Consensus        93 ~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k----~~~~~~~~l~~l~-~GG~Iv~DN  154 (202)
T 3cvo_A           93 GDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRF----RVGCALATAFSIT-RPVTLLFDD  154 (202)
T ss_dssp             CGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSS----HHHHHHHHHHHCS-SCEEEEETT
T ss_pred             hcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCC----chhHHHHHHHhcC-CCeEEEEeC
Confidence            0           001111     11 24789999987532    2366777889999 999997744

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.72  E-value=2.2e-08  Score=87.36  Aligned_cols=103  Identities=18%  Similarity=0.317  Sum_probs=69.3

Q ss_pred             CCeEEEEcCCcchhHHHHH--------hcC-------C--cEEEEcCCHHHHHHH-HcCC-----------------Cce
Q 024647           34 HELAWDVGTGSGQAAASLS--------GIF-------E--NVIGTETSPKQIEFA-TKLP-----------------NIR   78 (265)
Q Consensus        34 ~~~vlDvGcG~G~~~~~l~--------~~~-------~--~v~~vD~s~~~~~~a-~~~~-----------------~~~   78 (265)
                      +.+|+|+|||+|..|..+.        +++       +  +|...|+-...-... +.++                 +..
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            5789999999999998873        222       2  377778776664322 1111                 112


Q ss_pred             EEecCCccchhhhhhccCCCCceeEEEeccccccCC-hh--------------------------------------HHH
Q 024647           79 YELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFD-LP--------------------------------------QFY  119 (265)
Q Consensus        79 ~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~-~~--------------------------------------~~l  119 (265)
                      |..+-+    +.+..-.+|++++|+|+++.++||+. .+                                      .+|
T Consensus       133 f~~gvp----gSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL  208 (374)
T 3b5i_A          133 FVAGVP----GSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFL  208 (374)
T ss_dssp             EEEEEE----SCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecC----hhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHH
Confidence            222211    34444457899999999999999983 22                                      257


Q ss_pred             HHHHHHhcCCCcEEEEEecCCC
Q 024647          120 NQVKWVLKKPNGVIATWCYTVP  141 (265)
Q Consensus       120 ~~~~~~Lk~pgG~l~~~~~~~~  141 (265)
                      +..++.|+ |||.+++...+.+
T Consensus       209 ~~ra~eL~-pGG~mvl~~~gr~  229 (374)
T 3b5i_A          209 RARAAEVK-RGGAMFLVCLGRT  229 (374)
T ss_dssp             HHHHHHEE-EEEEEEEEEEECC
T ss_pred             HHHHHHhC-CCCEEEEEEecCC
Confidence            78899999 9999998766543

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.71  E-value=3.4e-08  Score=85.30  Aligned_cols=88  Identities=11%  Similarity=0.011  Sum_probs=67.7

Q ss_pred             CCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecccc
Q 024647           31 TTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAM  110 (265)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~  110 (265)
                      ..++++|||+||++|..|..+++++.+|+|||+.+ |-......+++.+.+       +|+.....+.+++|+|+|..+.
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~-l~~~l~~~~~V~~~~-------~d~~~~~~~~~~~D~vvsDm~~  280 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGP-MAQSLMDTGQVTWLR-------EDGFKFRPTRSNISWMVCDMVE  280 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHTTCEEEEECSSC-CCHHHHTTTCEEEEC-------SCTTTCCCCSSCEEEEEECCSS
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhh-cChhhccCCCeEEEe-------CccccccCCCCCcCEEEEcCCC
Confidence            46789999999999999999999999999999874 444555568899988       4545555566789999998765


Q ss_pred             ccCChhHHHHHHHHHhcCCC
Q 024647          111 HWFDLPQFYNQVKWVLKKPN  130 (265)
Q Consensus       111 ~~~~~~~~l~~~~~~Lk~pg  130 (265)
                      +   +...+..+.+.|. .+
T Consensus       281 ~---p~~~~~l~~~wl~-~~  296 (375)
T 4auk_A          281 K---PAKVAALMAQWLV-NG  296 (375)
T ss_dssp             C---HHHHHHHHHHHHH-TT
T ss_pred             C---hHHhHHHHHHHHh-cc
Confidence            4   4556666666665 44

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.71  E-value=1.1e-08  Score=84.88  Aligned_cols=89  Identities=12%  Similarity=0.019  Sum_probs=61.9

Q ss_pred             CeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHH-------HHcC--------CCceEEecCCccchhhhhhc-cCCC
Q 024647           35 ELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEF-------ATKL--------PNIRYELTSPAMSIAELEQN-VAAQ   98 (265)
Q Consensus        35 ~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~-------a~~~--------~~~~~~~~~~~~~~~d~~~~-~~~~   98 (265)
                      .+|||+|||+|..+..++.++++|+++|+++.+++.       ++..        .+++++.       +|..++ +...
T Consensus        90 ~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~-------~D~~~~L~~~~  162 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH-------ASSLTALTDIT  162 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEE-------SCHHHHSTTCS
T ss_pred             CEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEE-------CCHHHHHHhCc
Confidence            789999999999999999999999999999976433       3211        2355666       554443 2122


Q ss_pred             CceeEEEeccccccCChhHHHHHHHHHhcCCCc
Q 024647           99 STVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNG  131 (265)
Q Consensus        99 ~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG  131 (265)
                      ++||+|++...+++-.....+++..++|+ +.+
T Consensus       163 ~~fDvV~lDP~y~~~~~saavkk~~~~lr-~l~  194 (258)
T 2oyr_A          163 PRPQVVYLDPMFPHKQKSALVKKEMRVFQ-SLV  194 (258)
T ss_dssp             SCCSEEEECCCCCCCCC-----HHHHHHH-HHS
T ss_pred             ccCCEEEEcCCCCCcccchHHHHHHHHHH-Hhh
Confidence            47999999988776543457778888888 555

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.71  E-value=3.1e-08  Score=86.99  Aligned_cols=94  Identities=18%  Similarity=0.117  Sum_probs=71.6

Q ss_pred             CCCeEEEEcCCcchhHHHHHhc--C-CcEEEEcCCHHHHHHHHcC------CC--ceEEecCCccchhhhhhcc--CCCC
Q 024647           33 NHELAWDVGTGSGQAAASLSGI--F-ENVIGTETSPKQIEFATKL------PN--IRYELTSPAMSIAELEQNV--AAQS   99 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~--~-~~v~~vD~s~~~~~~a~~~------~~--~~~~~~~~~~~~~d~~~~~--~~~~   99 (265)
                      ++.+|||++||+|.++..++.+  + .+|+++|+++.+++.+++.      .+  +.+..       +|+..+.  ...+
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~-------~Da~~~l~~~~~~  124 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHG-------MEANFFLRKEWGF  124 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEEC-------SCHHHHHHSCCSS
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEe-------CCHHHHHHHhhCC
Confidence            4678999999999999999985  3 4799999999999988752      23  55665       4443331  1245


Q ss_pred             ceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647          100 TVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       100 ~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      .||+|++.-   +-.+..+++.+.+.|+ |||.|++.+
T Consensus       125 ~fD~V~lDP---~g~~~~~l~~a~~~Lk-~gGll~~t~  158 (392)
T 3axs_A          125 GFDYVDLDP---FGTPVPFIESVALSMK-RGGILSLTA  158 (392)
T ss_dssp             CEEEEEECC---SSCCHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             CCcEEEECC---CcCHHHHHHHHHHHhC-CCCEEEEEe
Confidence            799999875   1234579999999999 999888765

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.70  E-value=2.9e-08  Score=86.96  Aligned_cols=94  Identities=12%  Similarity=0.137  Sum_probs=70.4

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC---C---------------C---ceEEecCCccchh
Q 024647           33 NHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL---P---------------N---IRYELTSPAMSIA   89 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~---~---------------~---~~~~~~~~~~~~~   89 (265)
                      ++.+|||+|||+|..+..++++.  .+|+++|+++.+++.+++.   .               +   +.+..       +
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~-------~  119 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINH-------D  119 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEE-------S
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEc-------C
Confidence            56789999999999999999873  4799999999999988752   1               2   34444       5


Q ss_pred             hhhhcc-CCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647           90 ELEQNV-AAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        90 d~~~~~-~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      |+..+. ...+.||+|+..-   ......+++.+.+.|+ |||.+++.+
T Consensus       120 Da~~~~~~~~~~fD~I~lDP---~~~~~~~l~~a~~~lk-~gG~l~vt~  164 (378)
T 2dul_A          120 DANRLMAERHRYFHFIDLDP---FGSPMEFLDTALRSAK-RRGILGVTA  164 (378)
T ss_dssp             CHHHHHHHSTTCEEEEEECC---SSCCHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             cHHHHHHhccCCCCEEEeCC---CCCHHHHHHHHHHhcC-CCCEEEEEe
Confidence            554432 1135799999653   1244689999999999 999887754

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.70  E-value=8.1e-09  Score=85.46  Aligned_cols=112  Identities=11%  Similarity=-0.043  Sum_probs=75.1

Q ss_pred             cHHHHHHHHhhC-CCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHc----CCCceEEecCCccchhhhh
Q 024647           20 PEELFKFITSKT-TNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATK----LPNIRYELTSPAMSIAELE   92 (265)
Q Consensus        20 ~~~l~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~----~~~~~~~~~~~~~~~~d~~   92 (265)
                      .-+|.++...+. .+..+|||||||+|.+++.+++...  .|+|+|++..+...+..    ..++.......     |+.
T Consensus        76 AfKL~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~-----dv~  150 (282)
T 3gcz_A           76 SAKLRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKT-----DVF  150 (282)
T ss_dssp             HHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSC-----CGG
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCc-----chh
Confidence            336776666553 5667999999999999998886533  68999998765332221    01222222211     222


Q ss_pred             hccCCCCceeEEEeccccc----cCChh---HHHHHHHHHhcCCC--cEEEEEecC
Q 024647           93 QNVAAQSTVDLVTIAQAMH----WFDLP---QFYNQVKWVLKKPN--GVIATWCYT  139 (265)
Q Consensus        93 ~~~~~~~~~Dlv~~~~~~~----~~~~~---~~l~~~~~~Lk~pg--G~l~~~~~~  139 (265)
                        .++.+++|+|+|..+.+    +.|..   .+++-+.++|+ ||  |.|++-.+.
T Consensus       151 --~l~~~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk-~g~~G~Fv~KvF~  203 (282)
T 3gcz_A          151 --NMEVIPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQ-EGNYTEFCIKVLC  203 (282)
T ss_dssp             --GSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHH-HHCCCEEEEEESC
T ss_pred             --hcCCCCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcC-CCCCCcEEEEEec
Confidence              24668899999988776    33332   35777889999 99  999986665

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.70  E-value=3.5e-08  Score=90.50  Aligned_cols=112  Identities=17%  Similarity=0.132  Sum_probs=79.4

Q ss_pred             cHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcC--------------------CcEEEEcCCHHHHHHHHc----
Q 024647           20 PEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIF--------------------ENVIGTETSPKQIEFATK----   73 (265)
Q Consensus        20 ~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~--------------------~~v~~vD~s~~~~~~a~~----   73 (265)
                      |..+++.+....  .++.+|+|.+||+|.+...+++..                    .+++|+|+++.+++.|+.    
T Consensus       154 P~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l  233 (541)
T 2ar0_A          154 PRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLL  233 (541)
T ss_dssp             CHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHH
Confidence            566666666554  345689999999999988876542                    369999999999998874    


Q ss_pred             --CCC-----ceEEecCCccchhhhhhc-cCCCCceeEEEeccccccC-C--------------hhHHHHHHHHHhcCCC
Q 024647           74 --LPN-----IRYELTSPAMSIAELEQN-VAAQSTVDLVTIAQAMHWF-D--------------LPQFYNQVKWVLKKPN  130 (265)
Q Consensus        74 --~~~-----~~~~~~~~~~~~~d~~~~-~~~~~~~Dlv~~~~~~~~~-~--------------~~~~l~~~~~~Lk~pg  130 (265)
                        ..+     ..+..+       |.-.. +...++||+|+++..+... .              ...++..+.+.|+ ||
T Consensus       234 ~gi~~~~~~~~~I~~g-------DtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk-~g  305 (541)
T 2ar0_A          234 HDIEGNLDHGGAIRLG-------NTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLH-PG  305 (541)
T ss_dssp             TTCCCBGGGTBSEEES-------CTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEE-EE
T ss_pred             hCCCccccccCCeEeC-------CCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhC-CC
Confidence              122     455553       32211 1234689999998755432 1              1268999999999 99


Q ss_pred             cEEEEEecC
Q 024647          131 GVIATWCYT  139 (265)
Q Consensus       131 G~l~~~~~~  139 (265)
                      |++++..+.
T Consensus       306 Gr~a~V~p~  314 (541)
T 2ar0_A          306 GRAAVVVPD  314 (541)
T ss_dssp             EEEEEEEEH
T ss_pred             CEEEEEecC
Confidence            999987664

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.62  E-value=2.5e-08  Score=87.84  Aligned_cols=70  Identities=11%  Similarity=0.043  Sum_probs=54.9

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC--------CCceEEecCCccchhhhhhc-c-CCCCce
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL--------PNIRYELTSPAMSIAELEQN-V-AAQSTV  101 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~d~~~~-~-~~~~~~  101 (265)
                      .++.+|||+|||+|..+..+++.+.+|+++|+|+.|++.|+..        .++.+.+       +|+.+. + .++++|
T Consensus        92 ~~g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~-------~Da~~~L~~~~~~~f  164 (410)
T 3ll7_A           92 REGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEGKDVNILT-------GDFKEYLPLIKTFHP  164 (410)
T ss_dssp             CTTCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEE-------SCGGGSHHHHHHHCC
T ss_pred             CCCCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEE-------CcHHHhhhhccCCCc
Confidence            4478999999999999999999999999999999999988752        2466776       454442 1 123579


Q ss_pred             eEEEecc
Q 024647          102 DLVTIAQ  108 (265)
Q Consensus       102 Dlv~~~~  108 (265)
                      |+|+++-
T Consensus       165 DvV~lDP  171 (410)
T 3ll7_A          165 DYIYVDP  171 (410)
T ss_dssp             SEEEECC
T ss_pred             eEEEECC
Confidence            9999964

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.59  E-value=1.9e-07  Score=79.64  Aligned_cols=69  Identities=7%  Similarity=0.158  Sum_probs=53.3

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhccCCC---C
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQNVAAQ---S   99 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~~~~~---~   99 (265)
                      .++.+|||+|||+|..|..+++..   .+|+++|+++.+++.+++      ..++.+..       +|+..+....   +
T Consensus       101 ~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~-------~D~~~~~~~~~~~~  173 (309)
T 2b9e_A          101 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAE-------EDFLAVSPSDPRYH  173 (309)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEE-------CCGGGSCTTCGGGT
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEe-------CChHhcCccccccC
Confidence            467899999999999999999863   579999999999998774      24677776       5555543221   5


Q ss_pred             ceeEEEec
Q 024647          100 TVDLVTIA  107 (265)
Q Consensus       100 ~~Dlv~~~  107 (265)
                      +||.|++.
T Consensus       174 ~fD~Vl~D  181 (309)
T 2b9e_A          174 EVHYILLD  181 (309)
T ss_dssp             TEEEEEEC
T ss_pred             CCCEEEEc
Confidence            79999973

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.53  E-value=4.9e-07  Score=85.07  Aligned_cols=112  Identities=18%  Similarity=0.144  Sum_probs=77.9

Q ss_pred             cHHHHHHHHhh----C----CCCCeEEEEcCCcchhHHHHHhcCC-----cEEEEcCCHHHHHHH--Hc---C-------
Q 024647           20 PEELFKFITSK----T----TNHELAWDVGTGSGQAAASLSGIFE-----NVIGTETSPKQIEFA--TK---L-------   74 (265)
Q Consensus        20 ~~~l~~~l~~~----~----~~~~~vlDvGcG~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a--~~---~-------   74 (265)
                      |+.+...+...    .    +++.+|||.|||+|.+...++++..     +++|+|+++.+++.|  +.   .       
T Consensus       300 P~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi  379 (878)
T 3s1s_A          300 DIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSN  379 (878)
T ss_dssp             CHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTT
T ss_pred             CHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCC
Confidence            67777776554    2    2467999999999999999988763     599999999999988  31   0       


Q ss_pred             CCceEEecCCccchhhhhhc-cCCCCceeEEEeccccc--cCC----------------------------hhHHHHHHH
Q 024647           75 PNIRYELTSPAMSIAELEQN-VAAQSTVDLVTIAQAMH--WFD----------------------------LPQFYNQVK  123 (265)
Q Consensus        75 ~~~~~~~~~~~~~~~d~~~~-~~~~~~~Dlv~~~~~~~--~~~----------------------------~~~~l~~~~  123 (265)
                      .+..+..       .|+... ....+.||+|+++-.+-  +..                            ...++..+.
T Consensus       380 ~~~~I~~-------dD~L~~~~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al  452 (878)
T 3s1s_A          380 NAPTITG-------EDVCSLNPEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVT  452 (878)
T ss_dssp             BCCEEEC-------CCGGGCCGGGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHH
T ss_pred             CcceEEe-------cchhcccccccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHH
Confidence            1112222       333331 12346899999987551  111                            123788899


Q ss_pred             HHhcCCCcEEEEEecC
Q 024647          124 WVLKKPNGVIATWCYT  139 (265)
Q Consensus       124 ~~Lk~pgG~l~~~~~~  139 (265)
                      +.|+ |||.++++.+.
T Consensus       453 ~lLK-pGGrLAfIlP~  467 (878)
T 3s1s_A          453 ELVQ-DGTVISAIMPK  467 (878)
T ss_dssp             HHSC-TTCEEEEEEET
T ss_pred             HhcC-CCcEEEEEECh
Confidence            9999 99999988775

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.51  E-value=1.1e-07  Score=70.92  Aligned_cols=98  Identities=10%  Similarity=0.025  Sum_probs=63.5

Q ss_pred             HHHHHHHHhhCCCCCeEEEEcCCcc-hhHHHHHh-cCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCC-
Q 024647           21 EELFKFITSKTTNHELAWDVGTGSG-QAAASLSG-IFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAA-   97 (265)
Q Consensus        21 ~~l~~~l~~~~~~~~~vlDvGcG~G-~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-   97 (265)
                      +.+.++|.....++.+|||||||+| ..+..|++ .+.+|+++|+++..++         ++.       +|+-+.... 
T Consensus        23 e~LaeYI~~~~~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~---------~v~-------dDiF~P~~~~   86 (153)
T 2k4m_A           23 NDLAVYIIRCSGPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG---------IVR-------DDITSPRMEI   86 (153)
T ss_dssp             HHHHHHHHHHSCSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT---------EEC-------CCSSSCCHHH
T ss_pred             HHHHHHHHhcCCCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc---------eEE-------ccCCCCcccc
Confidence            4566666666666789999999999 69999997 7889999999998655         555       333221111 


Q ss_pred             CCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           98 QSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        98 ~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      -+.||+|.+...=  .+....+-++++.   -|.-+++....
T Consensus        87 Y~~~DLIYsirPP--~El~~~i~~lA~~---v~adliI~pL~  123 (153)
T 2k4m_A           87 YRGAALIYSIRPP--AEIHSSLMRVADA---VGARLIIKPLT  123 (153)
T ss_dssp             HTTEEEEEEESCC--TTTHHHHHHHHHH---HTCEEEEECBT
T ss_pred             cCCcCEEEEcCCC--HHHHHHHHHHHHH---cCCCEEEEcCC
Confidence            1379999874210  0333445555553   35567665544

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.46  E-value=6.8e-07  Score=84.37  Aligned_cols=113  Identities=13%  Similarity=0.093  Sum_probs=76.6

Q ss_pred             CcHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcC-----------------------------------------
Q 024647           19 YPEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIF-----------------------------------------   55 (265)
Q Consensus        19 y~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~-----------------------------------------   55 (265)
                      ..+.+...+....  .++..+||.+||+|.+...++...                                         
T Consensus       174 l~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~  253 (703)
T 3v97_A          174 IKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLA  253 (703)
T ss_dssp             SCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccc
Confidence            3566666665554  356789999999999998876532                                         


Q ss_pred             ---CcEEEEcCCHHHHHHHHcC------C-CceEEecCCccchhhhhhccCC--CCceeEEEecccccc-C-C---hhHH
Q 024647           56 ---ENVIGTETSPKQIEFATKL------P-NIRYELTSPAMSIAELEQNVAA--QSTVDLVTIAQAMHW-F-D---LPQF  118 (265)
Q Consensus        56 ---~~v~~vD~s~~~~~~a~~~------~-~~~~~~~~~~~~~~d~~~~~~~--~~~~Dlv~~~~~~~~-~-~---~~~~  118 (265)
                         .+|+|+|+++.|++.|+..      . .+.+.+       +|+.++..+  .++||+|+++-.... + +   ...+
T Consensus       254 ~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~-------~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~l  326 (703)
T 3v97_A          254 EYSSHFYGSDSDARVIQRARTNARLAGIGELITFEV-------KDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIAL  326 (703)
T ss_dssp             HCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEE-------CCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHH
T ss_pred             cCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEE-------CChhhCccccccCCCCEEEeCCCccccccchhHHHHH
Confidence               3699999999999998752      2 266777       555555322  348999999965432 1 2   2233


Q ss_pred             ---HHHHHHHhcCCCcEEEEEecC
Q 024647          119 ---YNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       119 ---l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                         +.++.+.+. |||.+++.+..
T Consensus       327 y~~l~~~lk~~~-~g~~~~ilt~~  349 (703)
T 3v97_A          327 HSLLGRIMKNQF-GGWNLSLFSAS  349 (703)
T ss_dssp             HHHHHHHHHHHC-TTCEEEEEESC
T ss_pred             HHHHHHHHHhhC-CCCeEEEEeCC
Confidence               444455566 79999887653

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.46  E-value=1.3e-07  Score=86.55  Aligned_cols=116  Identities=18%  Similarity=0.255  Sum_probs=78.5

Q ss_pred             cHHHHHHHHhhCC-CCCeEEEEcCCcchhHHHHHhc-----------------CCcEEEEcCCHHHHHHHHcC---CCce
Q 024647           20 PEELFKFITSKTT-NHELAWDVGTGSGQAAASLSGI-----------------FENVIGTETSPKQIEFATKL---PNIR   78 (265)
Q Consensus        20 ~~~l~~~l~~~~~-~~~~vlDvGcG~G~~~~~l~~~-----------------~~~v~~vD~s~~~~~~a~~~---~~~~   78 (265)
                      |..+++.+..... ...+|+|.+||+|.+...+++.                 ..+++|+|+++.+++.|+..   .++.
T Consensus       230 P~~Vv~lmv~ll~p~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~  309 (544)
T 3khk_A          230 PKSIVTLIVEMLEPYKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGID  309 (544)
T ss_dssp             CHHHHHHHHHHHCCCSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHHHhcCCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCC
Confidence            6777777776653 3458999999999988876542                 23699999999999988741   1221


Q ss_pred             EEecCCccchhhhhhcc-CCCCceeEEEeccccc---cCC----------------------h-----hHHHHHHHHHhc
Q 024647           79 YELTSPAMSIAELEQNV-AAQSTVDLVTIAQAMH---WFD----------------------L-----PQFYNQVKWVLK  127 (265)
Q Consensus        79 ~~~~~~~~~~~d~~~~~-~~~~~~Dlv~~~~~~~---~~~----------------------~-----~~~l~~~~~~Lk  127 (265)
                      .   +..+..+|.-..+ .+...||+|+++-.+.   |..                      +     -.++..+.+.|+
T Consensus       310 ~---~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk  386 (544)
T 3khk_A          310 F---NFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLA  386 (544)
T ss_dssp             C---BCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEE
T ss_pred             c---ccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhc
Confidence            1   1111234432222 3457899999987543   210                      0     158999999999


Q ss_pred             CCCcEEEEEecC
Q 024647          128 KPNGVIATWCYT  139 (265)
Q Consensus       128 ~pgG~l~~~~~~  139 (265)
                       |||+++++.+.
T Consensus       387 -~gGr~aiVlP~  397 (544)
T 3khk_A          387 -PTGSMALLLAN  397 (544)
T ss_dssp             -EEEEEEEEEET
T ss_pred             -cCceEEEEecc
Confidence             99999987764

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=98.40  E-value=3.7e-07  Score=76.09  Aligned_cols=111  Identities=10%  Similarity=-0.052  Sum_probs=72.5

Q ss_pred             HHHHHHHHhh-CCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHc----CCCceEEecCCccchhhhhh
Q 024647           21 EELFKFITSK-TTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATK----LPNIRYELTSPAMSIAELEQ   93 (265)
Q Consensus        21 ~~l~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~----~~~~~~~~~~~~~~~~d~~~   93 (265)
                      -+|.+..... ..++.+|||+||++|.++..+++..  ..|.|+|+...+......    ..++.......     |+. 
T Consensus        68 ~KL~ei~ek~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~-----di~-  141 (300)
T 3eld_A           68 AKIRWLHERGYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKS-----NVF-  141 (300)
T ss_dssp             HHHHHHHHHTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSC-----CTT-
T ss_pred             HHHHHHHHhCCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCc-----eee-
Confidence            3666666553 2577899999999999999999863  368999997653211110    01222222111     222 


Q ss_pred             ccCCCCceeEEEeccccc----cCChh---HHHHHHHHHhcCCC-cEEEEEecC
Q 024647           94 NVAAQSTVDLVTIAQAMH----WFDLP---QFYNQVKWVLKKPN-GVIATWCYT  139 (265)
Q Consensus        94 ~~~~~~~~Dlv~~~~~~~----~~~~~---~~l~~~~~~Lk~pg-G~l~~~~~~  139 (265)
                       .+..+++|+|+|..+-+    ..|..   .+++-+.++|+ || |.|++-.+.
T Consensus       142 -~l~~~~~DlVlsD~APnsG~~~~D~~rs~~LL~~A~~~Lk-pG~G~FV~KvF~  193 (300)
T 3eld_A          142 -TMPTEPSDTLLCDIGESSSNPLVERDRTMKVLENFERWKH-VNTENFCVKVLA  193 (300)
T ss_dssp             -TSCCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCC-TTCCEEEEEESS
T ss_pred             -ecCCCCcCEEeecCcCCCCCHHHHHHHHHHHHHHHHHHhc-CCCCcEEEEecc
Confidence             23567899999987766    22322   45778889999 99 999986655

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=98.39  E-value=1.5e-07  Score=76.70  Aligned_cols=109  Identities=9%  Similarity=-0.002  Sum_probs=67.2

Q ss_pred             HHHHHHHhh-CCCCCeEEEEcCCcchhHHHHHhc--CCcEEEEcCCHHHHHHHHcC----CCceEEecCCccchh-hhhh
Q 024647           22 ELFKFITSK-TTNHELAWDVGTGSGQAAASLSGI--FENVIGTETSPKQIEFATKL----PNIRYELTSPAMSIA-ELEQ   93 (265)
Q Consensus        22 ~l~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~-d~~~   93 (265)
                      +|.++-... .+++++|||+||++|..++..++.  ...|.|.++....  .....    .++++++.    ..+ |+..
T Consensus        61 KL~EIdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~--~~~P~~~~~~Gv~~i~~----~~G~Df~~  134 (269)
T 2px2_A           61 KLRWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG--HEEPMLMQSYGWNIVTM----KSGVDVFY  134 (269)
T ss_dssp             HHHHHHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT--SCCCCCCCSTTGGGEEE----ECSCCGGG
T ss_pred             HHHHHHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc--ccCCCcccCCCceEEEe----eccCCccC
Confidence            555554444 367899999999999999999987  3343444443321  01111    34433321    003 5554


Q ss_pred             ccCCCCceeEEEecccc---ccC-Chh---HHHHHHHHHhcCCCc-EEEEEecC
Q 024647           94 NVAAQSTVDLVTIAQAM---HWF-DLP---QFYNQVKWVLKKPNG-VIATWCYT  139 (265)
Q Consensus        94 ~~~~~~~~Dlv~~~~~~---~~~-~~~---~~l~~~~~~Lk~pgG-~l~~~~~~  139 (265)
                      +  +..++|+|+|..+=   ++. |..   .+++-+.++|+ ||| .|++=.+.
T Consensus       135 ~--~~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk-~gG~~FvvKVFq  185 (269)
T 2px2_A          135 K--PSEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLS-RGPKEFCIKILC  185 (269)
T ss_dssp             S--CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHT-TCCSEEEEEESC
T ss_pred             C--CCCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhh-cCCcEEEEEECC
Confidence            3  45689999997633   222 333   25777789999 999 88886555

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.36  E-value=2.4e-06  Score=71.05  Aligned_cols=91  Identities=16%  Similarity=0.135  Sum_probs=67.8

Q ss_pred             hCCCCcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC--CCceEEecCCccchhhhh
Q 024647           15 TRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL--PNIRYELTSPAMSIAELE   92 (265)
Q Consensus        15 ~rp~y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~--~~~~~~~~~~~~~~~d~~   92 (265)
                      +.|...+++++.|.  ..+++.+||.+||.|..|..++++..+|+|+|.++.+++.++++  .++.++..+......-+.
T Consensus         6 H~pVLl~e~le~L~--~~~gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l~~~L~   83 (285)
T 1wg8_A            6 HVPVLYQEALDLLA--VRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLA   83 (285)
T ss_dssp             CCCTTHHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHH
T ss_pred             chhHHHHHHHHhhC--CCCCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHHHhhccCCEEEEECCcchHHHHHH
Confidence            67888888888774  35678999999999999999999877899999999999988753  357777765522111122


Q ss_pred             hccCCCCceeEEEeccc
Q 024647           93 QNVAAQSTVDLVTIAQA  109 (265)
Q Consensus        93 ~~~~~~~~~Dlv~~~~~  109 (265)
                      ..  ..+++|.|++...
T Consensus        84 ~~--g~~~vDgIL~DLG   98 (285)
T 1wg8_A           84 AL--GVERVDGILADLG   98 (285)
T ss_dssp             HT--TCSCEEEEEEECS
T ss_pred             Hc--CCCCcCEEEeCCc
Confidence            22  2357999998653

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.34  E-value=1.4e-06  Score=79.67  Aligned_cols=113  Identities=19%  Similarity=0.186  Sum_probs=78.5

Q ss_pred             cHHHHHHHHhhCC------CCCeEEEEcCCcchhHHHHHhcC-----CcEEEEcCCHHHHHHHHc------C--CCceEE
Q 024647           20 PEELFKFITSKTT------NHELAWDVGTGSGQAAASLSGIF-----ENVIGTETSPKQIEFATK------L--PNIRYE   80 (265)
Q Consensus        20 ~~~l~~~l~~~~~------~~~~vlDvGcG~G~~~~~l~~~~-----~~v~~vD~s~~~~~~a~~------~--~~~~~~   80 (265)
                      |..+.+.+.....      ++.+|+|.+||+|.+...++++.     .+++|+|+++.++..|+.      .  .+..+.
T Consensus       202 P~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~  281 (542)
T 3lkd_A          202 PQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLH  281 (542)
T ss_dssp             CHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred             cHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceE
Confidence            6666666655432      45789999999999998887763     469999999999998874      1  234455


Q ss_pred             ecCCccchhhhhhc--c-CCCCceeEEEecccc--ccC-C------h---------------hHHHHHHHHHhcCCCcEE
Q 024647           81 LTSPAMSIAELEQN--V-AAQSTVDLVTIAQAM--HWF-D------L---------------PQFYNQVKWVLKKPNGVI  133 (265)
Q Consensus        81 ~~~~~~~~~d~~~~--~-~~~~~~Dlv~~~~~~--~~~-~------~---------------~~~l~~~~~~Lk~pgG~l  133 (265)
                      .       +|.-..  + .....||+|+++-.+  .|- +      +               -.++..+.+.|++|||++
T Consensus       282 ~-------gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~  354 (542)
T 3lkd_A          282 N-------ADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVM  354 (542)
T ss_dssp             E-------SCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEE
T ss_pred             e-------cceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeE
Confidence            5       332222  2 345789999998633  231 0      0               138899999998349999


Q ss_pred             EEEecC
Q 024647          134 ATWCYT  139 (265)
Q Consensus       134 ~~~~~~  139 (265)
                      +++.+.
T Consensus       355 a~VlP~  360 (542)
T 3lkd_A          355 AIVLPH  360 (542)
T ss_dssp             EEEEET
T ss_pred             EEEecc
Confidence            887765

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.31  E-value=9.7e-07  Score=73.19  Aligned_cols=105  Identities=16%  Similarity=0.229  Sum_probs=63.9

Q ss_pred             CCCeEEEEcCCcchhHHHHHhc-------CC-------cEEEEcCCH---HHHHHH-----------HcC--------CC
Q 024647           33 NHELAWDVGTGSGQAAASLSGI-------FE-------NVIGTETSP---KQIEFA-----------TKL--------PN   76 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~-------~~-------~v~~vD~s~---~~~~~a-----------~~~--------~~   76 (265)
                      ++.+|||+|||+|..+..+++.       .+       +++++|..|   +++..+           +.+        ++
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            4578999999999988886543       22       699999877   444432           210        00


Q ss_pred             c---eEEe--cCCccchhhhhh-ccCCC----CceeEEEeccccccCC----hhHHHHHHHHHhcCCCcEEEEEec
Q 024647           77 I---RYEL--TSPAMSIAELEQ-NVAAQ----STVDLVTIAQAMHWFD----LPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        77 ~---~~~~--~~~~~~~~d~~~-~~~~~----~~~Dlv~~~~~~~~~~----~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      +   .+..  .++++..+|+.+ ++..+    .+||+|+....-.--+    ...+++.+.++|+ |||+|+.++.
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~-pGG~l~tysa  214 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLAR-PGGTLATFTS  214 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEE-EEEEEEESCC
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcC-CCcEEEEEeC
Confidence            0   0100  122334466655 33222    2799999853111001    2579999999999 9999997554

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.27  E-value=1.7e-06  Score=75.01  Aligned_cols=98  Identities=15%  Similarity=0.035  Sum_probs=71.1

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC-C-------------CceEEecCCccchhhhhhc--
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL-P-------------NIRYELTSPAMSIAELEQN--   94 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-~-------------~~~~~~~~~~~~~~d~~~~--   94 (265)
                      .++++||-||.|.|...+.+.++.. +|+.||+++.+++.+++. +             +++...       +|.-.+  
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii-------~Da~~fl~  276 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLI-------EDCIPVLK  276 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEE-------SCHHHHHH
T ss_pred             CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeeh-------HHHHHHHH
Confidence            3568999999999999999988654 699999999999999862 2             234444       443221  


Q ss_pred             --cCCCCceeEEEeccccccC--C---------hhHHHHHHHHHhcCCCcEEEEEe
Q 024647           95 --VAAQSTVDLVTIAQAMHWF--D---------LPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        95 --~~~~~~~Dlv~~~~~~~~~--~---------~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                        ....+.||+|+....-...  +         ...+++.+.++|+ |||+++...
T Consensus       277 ~~~~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~-p~GVlv~Q~  331 (381)
T 3c6k_A          277 RYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLK-QDGKYFTQG  331 (381)
T ss_dssp             HHHHHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred             hhhhccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcC-CCCEEEEec
Confidence              1234679999987432221  1         1367889999999 999998754

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.19  E-value=2.1e-06  Score=72.75  Aligned_cols=59  Identities=17%  Similarity=0.227  Sum_probs=50.8

Q ss_pred             hCCCCcHHHHHHHHhhC-CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc
Q 024647           15 TRPNYPEELFKFITSKT-TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK   73 (265)
Q Consensus        15 ~rp~y~~~l~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~   73 (265)
                      +...+|.++++.+.... .+++.|||++||+|.++..+++.+.+++|+|+++.+++.|++
T Consensus       216 h~~~~p~~l~~~~i~~~~~~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~  275 (297)
T 2zig_A          216 HPAPFPLELAERLVRMFSFVGDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKE  275 (297)
T ss_dssp             --CCSCHHHHHHHHHHHCCTTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHH
Confidence            33457899999887654 577899999999999999999999999999999999998875

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=98.17  E-value=4.1e-06  Score=69.52  Aligned_cols=109  Identities=10%  Similarity=-0.010  Sum_probs=69.6

Q ss_pred             HHHHHHHhhC-CCCCeEEEEcCCcchhHHHHHhc-CC-cEEEEcCCHHHHHH---HHcC--CCceEEecCCccchhhhhh
Q 024647           22 ELFKFITSKT-TNHELAWDVGTGSGQAAASLSGI-FE-NVIGTETSPKQIEF---ATKL--PNIRYELTSPAMSIAELEQ   93 (265)
Q Consensus        22 ~l~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~-~~-~v~~vD~s~~~~~~---a~~~--~~~~~~~~~~~~~~~d~~~   93 (265)
                      +|.++..... .+.++|||+||++|.++..++.. ++ +|+|+|+...-.+.   .+++  ..+.+...      -|+..
T Consensus        82 KL~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~------~Dv~~  155 (321)
T 3lkz_A           82 KLRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSG------VDVFY  155 (321)
T ss_dssp             HHHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECS------CCTTS
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEec------cCHhh
Confidence            5665555543 56779999999999999976654 44 69999998762210   0011  22555552      14444


Q ss_pred             ccCCCCceeEEEeccccc----cCChh---HHHHHHHHHhcCCC-cEEEEEecC
Q 024647           94 NVAAQSTVDLVTIAQAMH----WFDLP---QFYNQVKWVLKKPN-GVIATWCYT  139 (265)
Q Consensus        94 ~~~~~~~~Dlv~~~~~~~----~~~~~---~~l~~~~~~Lk~pg-G~l~~~~~~  139 (265)
                      ++  ..++|+|+|.-+--    +.|..   .+|+-+.+.|+ +| |.|+|-.+.
T Consensus       156 l~--~~~~D~ivcDigeSs~~~~ve~~Rtl~vLel~~~wL~-~~~~~f~~KVl~  206 (321)
T 3lkz_A          156 RP--SECCDTLLCDIGESSSSAEVEEHRTIRVLEMVEDWLH-RGPREFCVKVLC  206 (321)
T ss_dssp             SC--CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHT-TCCCEEEEEESC
T ss_pred             CC--CCCCCEEEEECccCCCChhhhhhHHHHHHHHHHHHhc-cCCCcEEEEEcC
Confidence            53  36799999977511    11222   36777788999 88 888875544

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=98.02  E-value=1.2e-05  Score=64.65  Aligned_cols=108  Identities=13%  Similarity=0.057  Sum_probs=70.8

Q ss_pred             HHHHHHHhhC-CCCCeEEEEcCCcchhHHHHHhc-CC-cEEEEcCCHHHHHHH---Hc--CCCceEEecCCccchhhhhh
Q 024647           22 ELFKFITSKT-TNHELAWDVGTGSGQAAASLSGI-FE-NVIGTETSPKQIEFA---TK--LPNIRYELTSPAMSIAELEQ   93 (265)
Q Consensus        22 ~l~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~-~~-~v~~vD~s~~~~~~a---~~--~~~~~~~~~~~~~~~~d~~~   93 (265)
                      +|.+...... .+.++|||+||++|.++..++.. ++ +|+|+|+...-.+.=   +.  -..+.|.+.      -|+..
T Consensus        66 KL~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~g------vDv~~  139 (267)
T 3p8z_A           66 KLQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSG------KDVFY  139 (267)
T ss_dssp             HHHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECS------CCGGG
T ss_pred             HHHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEec------cceee
Confidence            5555555443 57789999999999999977654 43 699999976633210   00  156777773      16555


Q ss_pred             ccCCCCceeEEEeccccc----cCChh---HHHHHHHHHhcCCCcEEEEEecC
Q 024647           94 NVAAQSTVDLVTIAQAMH----WFDLP---QFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        94 ~~~~~~~~Dlv~~~~~~~----~~~~~---~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +  +..++|.|+|..+=-    +.|..   ++|+-+.+.|+ + |.+++-...
T Consensus       140 ~--~~~~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~-~-~~fc~KVl~  188 (267)
T 3p8z_A          140 L--PPEKCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLK-N-NQFCIKVLN  188 (267)
T ss_dssp             C--CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCS-S-CEEEEEESC
T ss_pred             c--CCccccEEEEecCCCCCChhhhhhHHHHHHHHHHHhcc-c-CCEEEEEcc
Confidence            5  347899999976431    22222   36677788899 8 777764443

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=97.97  E-value=2.4e-05  Score=65.50  Aligned_cols=112  Identities=12%  Similarity=0.056  Sum_probs=74.1

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhc-------CCcEEEEcCCHH--------------------------HHHHHHc-----
Q 024647           32 TNHELAWDVGTGSGQAAASLSGI-------FENVIGTETSPK--------------------------QIEFATK-----   73 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~-------~~~v~~vD~s~~--------------------------~~~~a~~-----   73 (265)
                      ..++.|||+|+..|..+..+++.       ..+|+++|..+.                          .++.+++     
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            44678999999999999988653       357999996432                          2333332     


Q ss_pred             -C--CCceEEecCCccchhhhhh-cc-CCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecCCCCCChHHH
Q 024647           74 -L--PNIRYELTSPAMSIAELEQ-NV-AAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVD  148 (265)
Q Consensus        74 -~--~~~~~~~~~~~~~~~d~~~-~~-~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~  148 (265)
                       .  .++.++.+++       .+ ++ .+.++||+|+..... +-.....++.+...|+ |||++++-++.   ..+...
T Consensus       185 gl~~~~I~li~Gda-------~etL~~~~~~~~d~vfIDaD~-y~~~~~~Le~~~p~L~-pGGiIv~DD~~---~~~G~~  252 (282)
T 2wk1_A          185 DLLDEQVRFLPGWF-------KDTLPTAPIDTLAVLRMDGDL-YESTWDTLTNLYPKVS-VGGYVIVDDYM---MCPPCK  252 (282)
T ss_dssp             TCCSTTEEEEESCH-------HHHSTTCCCCCEEEEEECCCS-HHHHHHHHHHHGGGEE-EEEEEEESSCT---TCHHHH
T ss_pred             CCCcCceEEEEeCH-------HHHHhhCCCCCEEEEEEcCCc-cccHHHHHHHHHhhcC-CCEEEEEcCCC---CCHHHH
Confidence             1  5688888543       33 22 235689999987542 1133468999999999 99999986652   124445


Q ss_pred             Hhhcccc
Q 024647          149 AVFQPFY  155 (265)
Q Consensus       149 ~~~~~~~  155 (265)
                      +++.+|.
T Consensus       253 ~Av~Ef~  259 (282)
T 2wk1_A          253 DAVDEYR  259 (282)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555544

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.71  E-value=0.00025  Score=58.91  Aligned_cols=118  Identities=11%  Similarity=0.053  Sum_probs=73.0

Q ss_pred             HHHHHHHhh---CCCCCeEEEEcC------CcchhHHH-HHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhh
Q 024647           22 ELFKFITSK---TTNHELAWDVGT------GSGQAAAS-LSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAEL   91 (265)
Q Consensus        22 ~l~~~l~~~---~~~~~~vlDvGc------G~G~~~~~-l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~   91 (265)
                      ++.++|...   .+.+++|||+|+      -+|..... +.+.++.|+++|+.+-..     ..+ .+++       +|.
T Consensus        95 qlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~s-----da~-~~Iq-------GD~  161 (344)
T 3r24_A           95 QLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVS-----DAD-STLI-------GDC  161 (344)
T ss_dssp             HHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCBC-----SSS-EEEE-------SCG
T ss_pred             HHHHHhccccEeecCCCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCccccc-----CCC-eEEE-------ccc
Confidence            455666331   267899999996      57763222 222234699999987631     123 3355       554


Q ss_pred             hhccCCCCceeEEEecccccc---CC---------hhHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHhhcccc
Q 024647           92 EQNVAAQSTVDLVTIAQAMHW---FD---------LPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQPFY  155 (265)
Q Consensus        92 ~~~~~~~~~~Dlv~~~~~~~~---~~---------~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~~~~~  155 (265)
                      .... ..++||+|++..+=.-   .|         .+.++.-+.++|+ |||.|++=.+.... .+.+.++.+.|.
T Consensus       162 ~~~~-~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~Lk-pGGsFvVKVFQGsg-~~~L~~lrk~F~  234 (344)
T 3r24_A          162 ATVH-TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLA-LGGSIAVKITEHSW-NADLYKLMGHFS  234 (344)
T ss_dssp             GGEE-ESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEE-EEEEEEEEECSSSC-CHHHHHHHTTEE
T ss_pred             cccc-cCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCc-CCCEEEEEEecCCC-HHHHHHHHhhCC
Confidence            4443 3478999999763221   21         2356777899999 99999986665444 466666655443

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=97.71  E-value=0.0002  Score=61.95  Aligned_cols=100  Identities=17%  Similarity=0.123  Sum_probs=71.0

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC------------CCceEEecCCccchhhhhhcc-C
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL------------PNIRYELTSPAMSIAELEQNV-A   96 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~------------~~~~~~~~~~~~~~~d~~~~~-~   96 (265)
                      .++.+|||+.||+|.=|.++++...  .|+++|+++.-++..++.            .++....       .|...++ .
T Consensus       147 ~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~-------~D~~~~~~~  219 (359)
T 4fzv_A          147 QPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTS-------WDGRKWGEL  219 (359)
T ss_dssp             CTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEEC-------CCGGGHHHH
T ss_pred             CCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEe-------Cchhhcchh
Confidence            5678999999999999999998765  599999999988766531            2444444       3443332 2


Q ss_pred             CCCceeEEEecccc----c----------cC-C----------hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           97 AQSTVDLVTIAQAM----H----------WF-D----------LPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        97 ~~~~~Dlv~~~~~~----~----------~~-~----------~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      ..+.||.|++.-..    +          |- .          ....+..+.+.|| |||+|+..+..
T Consensus       220 ~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk-pGG~LVYsTCS  286 (359)
T 4fzv_A          220 EGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATK-PGGHVVYSTCS  286 (359)
T ss_dssp             STTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEE-EEEEEEEEESC
T ss_pred             ccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCC-CCcEEEEEeCC
Confidence            45689999974311    1          11 1          1247788899999 99999987775

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.70  E-value=0.00024  Score=60.50  Aligned_cols=94  Identities=10%  Similarity=0.101  Sum_probs=66.0

Q ss_pred             hhCCCCcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC--CCceEEecCCccch
Q 024647           14 ETRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL--PNIRYELTSPAMSI   88 (265)
Q Consensus        14 ~~rp~y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~--~~~~~~~~~~~~~~   88 (265)
                      .+.|..-.++++.|.  ..+++.+||..||.|..|..++++.   .+|+|+|.++.+++.++++  .++.++..+..-..
T Consensus        40 ~H~pVLl~Evl~~L~--i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~l~  117 (347)
T 3tka_A           40 KHTTVLLDEAVNGLN--IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSALG  117 (347)
T ss_dssp             --CCTTTHHHHHHTC--CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGGHH
T ss_pred             CcccccHHHHHHhhC--CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHHHH
Confidence            377888888887774  3567899999999999999999874   3699999999999998653  45677776552211


Q ss_pred             hhhhhccCCCCceeEEEecccc
Q 024647           89 AELEQNVAAQSTVDLVTIAQAM  110 (265)
Q Consensus        89 ~d~~~~~~~~~~~Dlv~~~~~~  110 (265)
                      .-+..... .+++|.|+....+
T Consensus       118 ~~L~~~g~-~~~vDgILfDLGV  138 (347)
T 3tka_A          118 EYVAERDL-IGKIDGILLDLGV  138 (347)
T ss_dssp             HHHHHTTC-TTCEEEEEEECSC
T ss_pred             HHHHhcCC-CCcccEEEECCcc
Confidence            11222211 1369999987743

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.62  E-value=8.7e-05  Score=61.46  Aligned_cols=56  Identities=23%  Similarity=0.305  Sum_probs=49.7

Q ss_pred             CCcHHHHHHHHhh-CCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc
Q 024647           18 NYPEELFKFITSK-TTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK   73 (265)
Q Consensus        18 ~y~~~l~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~   73 (265)
                      ..|.++++.+... ..+++.|||..||+|+++....+.+.+++|+|+++..++.+++
T Consensus       196 ~~p~~l~~~~i~~~~~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~~~~~~~~  252 (260)
T 1g60_A          196 PKPRDLIERIIRASSNPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANF  252 (260)
T ss_dssp             CCCHHHHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHH
Confidence            5688999887765 4678899999999999999999999999999999999998874

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=97.42  E-value=0.00054  Score=56.94  Aligned_cols=113  Identities=15%  Similarity=0.128  Sum_probs=78.3

Q ss_pred             HHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC----CCceEEecCCccchhhhhhccC
Q 024647           21 EELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL----PNIRYELTSPAMSIAELEQNVA   96 (265)
Q Consensus        21 ~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~d~~~~~~   96 (265)
                      ...++.+... + +..+||+=+|||.+++.+.+.+.+++.+|.++..++..++.    .++.....++.   .-+..+..
T Consensus        81 ~~yf~~l~~~-n-~~~~LDlfaGSGaLgiEaLS~~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~---~~L~~l~~  155 (283)
T 2oo3_A           81 LEYISVIKQI-N-LNSTLSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGV---SKLNALLP  155 (283)
T ss_dssp             HHHHHHHHHH-S-SSSSCCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHH---HHHHHHCS
T ss_pred             HHHHHHHHHh-c-CCCceeEeCCcHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHH---HHHHHhcC
Confidence            3456666653 2 35589999999999999998778899999999999988863    23455543320   11222223


Q ss_pred             CCCceeEEEeccccccC-ChhHHHHHHHH--HhcCCCcEEEEEecC
Q 024647           97 AQSTVDLVTIAQAMHWF-DLPQFYNQVKW--VLKKPNGVIATWCYT  139 (265)
Q Consensus        97 ~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~--~Lk~pgG~l~~~~~~  139 (265)
                      +...||+|++.-....- +..++++.+.+  .+. |+|++++|.+-
T Consensus       156 ~~~~fdLVfiDPPYe~k~~~~~vl~~L~~~~~r~-~~Gi~v~WYPi  200 (283)
T 2oo3_A          156 PPEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKF-STGLYCVWYPV  200 (283)
T ss_dssp             CTTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHC-TTSEEEEEEEE
T ss_pred             CCCCccEEEECCCCCCCcHHHHHHHHHHHhCccC-CCeEEEEEEec
Confidence            44579999998766643 45556655544  456 89999999885

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=97.30  E-value=0.0014  Score=59.77  Aligned_cols=117  Identities=15%  Similarity=0.140  Sum_probs=74.8

Q ss_pred             cHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhc---------------CCcEEEEcCCHHHHHHHHc------CCC
Q 024647           20 PEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGI---------------FENVIGTETSPKQIEFATK------LPN   76 (265)
Q Consensus        20 ~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~---------------~~~v~~vD~s~~~~~~a~~------~~~   76 (265)
                      |..+++.+....  .++.+|+|-.||+|.+.....++               -..+.|+|+++.+...|+-      ...
T Consensus       202 P~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~  281 (530)
T 3ufb_A          202 PRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEY  281 (530)
T ss_dssp             CHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSC
T ss_pred             cHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCcc
Confidence            677787777664  34568999999999998776542               1359999999999888763      222


Q ss_pred             ceEEecCCccchhhhhhccCCCCceeEEEeccccc--cC-C--------------hhHHHHHHHHHhcC------CCcEE
Q 024647           77 IRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMH--WF-D--------------LPQFYNQVKWVLKK------PNGVI  133 (265)
Q Consensus        77 ~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~--~~-~--------------~~~~l~~~~~~Lk~------pgG~l  133 (265)
                      .++..++.- . ...... .+...||+|+++-.+-  |- +              ...+++.+.+.|++      |||++
T Consensus       282 ~~I~~~dtL-~-~~~~~~-~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~  358 (530)
T 3ufb_A          282 PRIDPENSL-R-FPLREM-GDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRA  358 (530)
T ss_dssp             CEEECSCTT-C-SCGGGC-CGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEE
T ss_pred             ccccccccc-c-Cchhhh-cccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceE
Confidence            334442210 0 000111 1235799999987552  11 0              01477888888861      59999


Q ss_pred             EEEecC
Q 024647          134 ATWCYT  139 (265)
Q Consensus       134 ~~~~~~  139 (265)
                      +++.+.
T Consensus       359 avVlP~  364 (530)
T 3ufb_A          359 AVVVPN  364 (530)
T ss_dssp             EEEEEH
T ss_pred             EEEecc
Confidence            987764

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.29  E-value=0.00053  Score=59.17  Aligned_cols=65  Identities=14%  Similarity=0.079  Sum_probs=50.2

Q ss_pred             cHHHHHHHHhhCC--------CCCeEEEEcCCcchhHHHHHhc--CCcEEEEcCCHHHHHHHHc---CCCceEEecCC
Q 024647           20 PEELFKFITSKTT--------NHELAWDVGTGSGQAAASLSGI--FENVIGTETSPKQIEFATK---LPNIRYELTSP   84 (265)
Q Consensus        20 ~~~l~~~l~~~~~--------~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~---~~~~~~~~~~~   84 (265)
                      .+.+++.|.....        ++..|||||+|.|.+|..|+++  ..+|+++|+++.++...+.   .+++..+.+++
T Consensus        37 d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~  114 (353)
T 1i4w_A           37 NPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDP  114 (353)
T ss_dssp             CHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCT
T ss_pred             CHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCc
Confidence            4566666665432        3478999999999999999986  4589999999999988765   35677777554

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=97.20  E-value=0.0023  Score=56.11  Aligned_cols=105  Identities=15%  Similarity=0.114  Sum_probs=71.1

Q ss_pred             CCCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCCccc-hhhhhhccCCCCceeEEEe
Q 024647           31 TTNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSPAMS-IAELEQNVAAQSTVDLVTI  106 (265)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~Dlv~~  106 (265)
                      ..++++||.+|||. |.++..+++. ++ +|+++|.++..++.++++. ...+....... ...+..+. ....+|+|+-
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lG-a~~i~~~~~~~~~~~~~~~~-~g~g~Dvvid  260 (398)
T 2dph_A          183 VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAG-FETIDLRNSAPLRDQIDQIL-GKPEVDCGVD  260 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTT-CEEEETTSSSCHHHHHHHHH-SSSCEEEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC-CcEEcCCCcchHHHHHHHHh-CCCCCCEEEE
Confidence            35778999999987 8888888874 66 8999999999999998753 34333221100 12222221 2336999997


Q ss_pred             cccccc---------CChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          107 AQAMHW---------FDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       107 ~~~~~~---------~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      ...-..         .++...++++.++|+ ++|++++...
T Consensus       261 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~-~gG~iv~~G~  300 (398)
T 2dph_A          261 AVGFEAHGLGDEANTETPNGALNSLFDVVR-AGGAIGIPGI  300 (398)
T ss_dssp             CSCTTCBCSGGGTTSBCTTHHHHHHHHHEE-EEEEEECCSC
T ss_pred             CCCCccccccccccccccHHHHHHHHHHHh-cCCEEEEecc
Confidence            654322         234468999999999 9999987543

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=97.11  E-value=0.00012  Score=77.88  Aligned_cols=109  Identities=14%  Similarity=0.122  Sum_probs=53.5

Q ss_pred             HHHHHHhhC-CCCCeEEEEcCCcchhHHHHHhc-------CCcEEEEcCCHHHHHHHHcC-CCceEEecCCccchhhhhh
Q 024647           23 LFKFITSKT-TNHELAWDVGTGSGQAAASLSGI-------FENVIGTETSPKQIEFATKL-PNIRYELTSPAMSIAELEQ   93 (265)
Q Consensus        23 l~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~-------~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~d~~~   93 (265)
                      .++.+.... .+..+|||||.|+|..+..+.+.       +.+++.+|+|+...+.+++. .........     -|.++
T Consensus      1229 ~~~~~~~~~~~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~-----~d~~~ 1303 (2512)
T 2vz8_A         1229 CVDTALENMASPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQ-----WDPAN 1303 (2512)
T ss_dssp             HHHHHHTTSSSSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEEC-----CCSSC
T ss_pred             HHHHHHhcCCCCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhccccccc-----ccccc
Confidence            334443332 34578999999999888776543       23689999999888777642 111111100     01111


Q ss_pred             c-cCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEe
Q 024647           94 N-VAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        94 ~-~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      . ++...+||+|++...+|-. +....+.++.++|| |||.+++..
T Consensus      1304 ~~~~~~~~ydlvia~~vl~~t~~~~~~l~~~~~lL~-p~G~l~~~e 1348 (2512)
T 2vz8_A         1304 PAPGSLGKADLLVCNCALATLGDPAVAVGNMAATLK-EGGFLLLHT 1348 (2512)
T ss_dssp             CCC-----CCEEEEECC---------------------CCEEEEEE
T ss_pred             cccCCCCceeEEEEcccccccccHHHHHHHHHHhcC-CCcEEEEEe
Confidence            1 1234579999999999977 78889999999999 999988754

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=97.11  E-value=0.0024  Score=55.43  Aligned_cols=99  Identities=17%  Similarity=0.134  Sum_probs=67.7

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      .++++||-+|||. |.++..+++. ++ +|+++|.++..++.++++................+.+.  ..+.+|+|+...
T Consensus       189 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~--~~gg~D~vid~~  266 (371)
T 1f8f_A          189 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEI--TDGGVNFALEST  266 (371)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHH--TTSCEEEEEECS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHh--cCCCCcEEEECC
Confidence            5678999999987 8888888874 56 59999999999998886432223332111111122222  223799998653


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                           .....++.+.+.|+ ++|++++...
T Consensus       267 -----g~~~~~~~~~~~l~-~~G~iv~~G~  290 (371)
T 1f8f_A          267 -----GSPEILKQGVDALG-ILGKIAVVGA  290 (371)
T ss_dssp             -----CCHHHHHHHHHTEE-EEEEEEECCC
T ss_pred             -----CCHHHHHHHHHHHh-cCCEEEEeCC
Confidence                 23467899999999 9999987654

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=97.10  E-value=0.004  Score=53.70  Aligned_cols=100  Identities=12%  Similarity=0.079  Sum_probs=67.7

Q ss_pred             CCCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecC---CccchhhhhhccCCCCceeEE
Q 024647           31 TTNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTS---PAMSIAELEQNVAAQSTVDLV  104 (265)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~---~~~~~~d~~~~~~~~~~~Dlv  104 (265)
                      ..++++||-+|+|. |.++..+++. ++ +|+++|.++..++.++++..-......   .......+.... . +.+|+|
T Consensus       169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~-~-~g~D~v  246 (356)
T 1pl8_A          169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQL-G-CKPEVT  246 (356)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHH-T-SCCSEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHh-C-CCCCEE
Confidence            45778999999986 8888888874 56 799999999999988875322333221   000001122221 2 569999


Q ss_pred             EeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          105 TIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       105 ~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      +-..     .....+..+.++|+ ++|+++....
T Consensus       247 id~~-----g~~~~~~~~~~~l~-~~G~iv~~G~  274 (356)
T 1pl8_A          247 IECT-----GAEASIQAGIYATR-SGGTLVLVGL  274 (356)
T ss_dssp             EECS-----CCHHHHHHHHHHSC-TTCEEEECSC
T ss_pred             EECC-----CChHHHHHHHHHhc-CCCEEEEEec
Confidence            8653     23457889999999 9999987654

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=97.06  E-value=0.0027  Score=54.69  Aligned_cols=101  Identities=14%  Similarity=0.111  Sum_probs=68.7

Q ss_pred             CCCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647           31 TTNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIA  107 (265)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~  107 (265)
                      ..++++||-+|+|. |.++..+++. ++ +|+++|.++..++.++++................+.+. .....+|+|+-.
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~-t~g~g~D~v~d~  242 (352)
T 3fpc_A          164 IKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKA-TDGKGVDKVVIA  242 (352)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHH-TTTCCEEEEEEC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHH-cCCCCCCEEEEC
Confidence            35678899999987 8888888875 55 79999999999998887532223321111111122222 234479999964


Q ss_pred             cccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      .     .....++.+.+.|+ |+|+++....
T Consensus       243 ~-----g~~~~~~~~~~~l~-~~G~~v~~G~  267 (352)
T 3fpc_A          243 G-----GDVHTFAQAVKMIK-PGSDIGNVNY  267 (352)
T ss_dssp             S-----SCTTHHHHHHHHEE-EEEEEEECCC
T ss_pred             C-----CChHHHHHHHHHHh-cCCEEEEecc
Confidence            2     23468899999999 9999987654

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=97.02  E-value=0.0033  Score=55.05  Aligned_cols=105  Identities=17%  Similarity=0.096  Sum_probs=71.9

Q ss_pred             CCCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCCcc-chhhhhhccCCCCceeEEEe
Q 024647           31 TTNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSPAM-SIAELEQNVAAQSTVDLVTI  106 (265)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~Dlv~~  106 (265)
                      ..++++||-+|||. |.++..+++. ++ +|+++|.++..++.++++. ...+...-.. ....+..+ .....+|+|+-
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lG-a~~i~~~~~~~~~~~v~~~-t~g~g~Dvvid  260 (398)
T 1kol_A          183 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQG-FEIADLSLDTPLHEQIAAL-LGEPEVDCAVD  260 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT-CEEEETTSSSCHHHHHHHH-HSSSCEEEEEE
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcC-CcEEccCCcchHHHHHHHH-hCCCCCCEEEE
Confidence            35678999999987 8888888875 55 6999999999999998753 3333321100 01122222 12346999996


Q ss_pred             ccc----------cccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          107 AQA----------MHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       107 ~~~----------~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      .-.          .|+.++...++.+.++|+ ++|++++...
T Consensus       261 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~G~iv~~G~  301 (398)
T 1kol_A          261 AVGFEARGHGHEGAKHEAPATVLNSLMQVTR-VAGKIGIPGL  301 (398)
T ss_dssp             CCCTTCBCSSTTGGGSBCTTHHHHHHHHHEE-EEEEEEECSC
T ss_pred             CCCCcccccccccccccchHHHHHHHHHHHh-cCCEEEEecc
Confidence            543          244456678999999999 9999987553

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=96.92  E-value=0.0045  Score=52.93  Aligned_cols=98  Identities=15%  Similarity=0.110  Sum_probs=67.9

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA  109 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~  109 (265)
                      .++++||-.|+|. |.++..+++. +++|+++|.+++.++.++++.........-......+...   .+.+|+|+... 
T Consensus       165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~---~g~~d~vid~~-  240 (340)
T 3s2e_A          165 RPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKE---IGGAHGVLVTA-  240 (340)
T ss_dssp             CTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHH---HSSEEEEEESS-
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHh---CCCCCEEEEeC-
Confidence            5678899999986 8888888874 6799999999999999987643333332211111112221   23689988642 


Q ss_pred             cccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          110 MHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       110 ~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                          .....++.+.+.|+ ++|+++....
T Consensus       241 ----g~~~~~~~~~~~l~-~~G~iv~~G~  264 (340)
T 3s2e_A          241 ----VSPKAFSQAIGMVR-RGGTIALNGL  264 (340)
T ss_dssp             ----CCHHHHHHHHHHEE-EEEEEEECSC
T ss_pred             ----CCHHHHHHHHHHhc-cCCEEEEeCC
Confidence                23568899999999 9999987544

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=96.83  E-value=0.00087  Score=57.22  Aligned_cols=56  Identities=20%  Similarity=0.239  Sum_probs=49.7

Q ss_pred             CCcHHHHHHHHhh-CCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc
Q 024647           18 NYPEELFKFITSK-TTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK   73 (265)
Q Consensus        18 ~y~~~l~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~   73 (265)
                      ..|.++++.+... .++++.|||--||+|+.+.+..+.+.+.+|+|+++..++.+++
T Consensus       236 ~kp~~l~~~~i~~~~~~~~~VlDpF~GsGtt~~aa~~~gr~~ig~e~~~~~~~~~~~  292 (323)
T 1boo_A          236 RFPAKLPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAF  292 (323)
T ss_dssp             CCCTHHHHHHHHHHCCTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHG
T ss_pred             cCCHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcCCCEEEEeCCHHHHHHHHH
Confidence            4678898888765 4678999999999999999999999999999999999998885

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=96.82  E-value=0.013  Score=50.33  Aligned_cols=101  Identities=11%  Similarity=0.056  Sum_probs=66.9

Q ss_pred             CCCCCeEEEEcCCc-chhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCC-ccchhhhhhccCC---CCceeEE
Q 024647           31 TTNHELAWDVGTGS-GQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSP-AMSIAELEQNVAA---QSTVDLV  104 (265)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~-~~~~~d~~~~~~~---~~~~Dlv  104 (265)
                      ..++++||-+|+|. |.++..+++. +++|+++|.++..++.++++..-......- ......+... ..   ...+|+|
T Consensus       166 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~-~~~~~g~g~D~v  244 (352)
T 1e3j_A          166 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIER-IRSAIGDLPNVT  244 (352)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHH-HHHHSSSCCSEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHH-hccccCCCCCEE
Confidence            45778999999986 7778787764 568999999999999888753222222110 0001112221 11   2469999


Q ss_pred             EeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          105 TIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       105 ~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      +...     .....++.+.++|+ ++|+++....
T Consensus       245 id~~-----g~~~~~~~~~~~l~-~~G~iv~~G~  272 (352)
T 1e3j_A          245 IDCS-----GNEKCITIGINITR-TGGTLMLVGM  272 (352)
T ss_dssp             EECS-----CCHHHHHHHHHHSC-TTCEEEECSC
T ss_pred             EECC-----CCHHHHHHHHHHHh-cCCEEEEEec
Confidence            8653     23457889999999 9999987654

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=96.80  E-value=0.0087  Score=51.96  Aligned_cols=99  Identities=14%  Similarity=0.021  Sum_probs=67.9

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecC--CccchhhhhhccCCCCceeEEEe
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTS--PAMSIAELEQNVAAQSTVDLVTI  106 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~Dlv~~  106 (265)
                      .++++||-+|+|. |.++..+++. ++ +|+++|.++..++.++++.....+...  .......+..+  .++.+|+|+-
T Consensus       192 ~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~--~~gg~D~vid  269 (378)
T 3uko_A          192 EPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDL--TDGGVDYSFE  269 (378)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHH--TTSCBSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHh--cCCCCCEEEE
Confidence            5678899999986 8888888764 56 799999999999999875332332211  00011122222  2237999996


Q ss_pred             ccccccCChhHHHHHHHHHhcCCC-cEEEEEec
Q 024647          107 AQAMHWFDLPQFYNQVKWVLKKPN-GVIATWCY  138 (265)
Q Consensus       107 ~~~~~~~~~~~~l~~~~~~Lk~pg-G~l~~~~~  138 (265)
                      .     ......++.+.+.|+ +| |++++...
T Consensus       270 ~-----~g~~~~~~~~~~~l~-~g~G~iv~~G~  296 (378)
T 3uko_A          270 C-----IGNVSVMRAALECCH-KGWGTSVIVGV  296 (378)
T ss_dssp             C-----SCCHHHHHHHHHTBC-TTTCEEEECSC
T ss_pred             C-----CCCHHHHHHHHHHhh-ccCCEEEEEcc
Confidence            5     233568899999999 97 99987654

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=96.79  E-value=0.0076  Score=47.13  Aligned_cols=99  Identities=19%  Similarity=0.094  Sum_probs=62.7

Q ss_pred             CCCCeEEEEcC--CcchhHHHHHh-cCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           32 TNHELAWDVGT--GSGQAAASLSG-IFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        32 ~~~~~vlDvGc--G~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      .++++||..|+  |.|.....++. .+.+|+++|.+++.++.+++..........-......+.+. .....+|+++.+.
T Consensus        37 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~-~~~~~~D~vi~~~  115 (198)
T 1pqw_A           37 SPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILEL-TDGYGVDVVLNSL  115 (198)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHH-TTTCCEEEEEECC
T ss_pred             CCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEeeCCcHHHHHHHHHH-hCCCCCeEEEECC
Confidence            56789999995  34666555554 57899999999998888776422122221110001112222 1234699999653


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      .      ...++.+.+.|+ ++|+++....
T Consensus       116 g------~~~~~~~~~~l~-~~G~~v~~g~  138 (198)
T 1pqw_A          116 A------GEAIQRGVQILA-PGGRFIELGK  138 (198)
T ss_dssp             C------THHHHHHHHTEE-EEEEEEECSC
T ss_pred             c------hHHHHHHHHHhc-cCCEEEEEcC
Confidence            3      357889999999 9999987543

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=96.77  E-value=0.01  Score=51.30  Aligned_cols=95  Identities=18%  Similarity=0.148  Sum_probs=67.0

Q ss_pred             CCCeEEEEc-CCc-chhHHHHHhc--CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           33 NHELAWDVG-TGS-GQAAASLSGI--FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        33 ~~~~vlDvG-cG~-G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      ++++||-.| +|. |.++..+++.  +.+|+++|.+++.++.++++......... ......+.++  ..+.+|+|+-. 
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~vi~~~-~~~~~~v~~~--~~~g~Dvvid~-  246 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHVIDHS-KPLAAEVAAL--GLGAPAFVFST-  246 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSEEECTT-SCHHHHHHTT--CSCCEEEEEEC-
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCEEEeCC-CCHHHHHHHh--cCCCceEEEEC-
Confidence            567899998 665 8999999985  56899999999999988875432233221 1111223333  34579999864 


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEE
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATW  136 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~  136 (265)
                          ......++.+.++|+ ++|++++.
T Consensus       247 ----~g~~~~~~~~~~~l~-~~G~iv~~  269 (363)
T 4dvj_A          247 ----THTDKHAAEIADLIA-PQGRFCLI  269 (363)
T ss_dssp             ----SCHHHHHHHHHHHSC-TTCEEEEC
T ss_pred             ----CCchhhHHHHHHHhc-CCCEEEEE
Confidence                233468899999999 99999875

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=96.76  E-value=0.0085  Score=51.93  Aligned_cols=102  Identities=14%  Similarity=0.088  Sum_probs=68.5

Q ss_pred             CCCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhh-ccCCCCceeEEEe
Q 024647           31 TTNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQ-NVAAQSTVDLVTI  106 (265)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~Dlv~~  106 (265)
                      ..++++||-+|+|. |.++..+++. ++ +|+++|.++..++.++++.....+..........+.. .....+.+|+|+-
T Consensus       180 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid  259 (370)
T 4ej6_A          180 IKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIE  259 (370)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEE
Confidence            46778999999986 8888888875 55 7999999999999888743222332211111111222 0022347999996


Q ss_pred             ccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          107 AQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       107 ~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      .     ......++.+.++|+ +||++++...
T Consensus       260 ~-----~G~~~~~~~~~~~l~-~~G~vv~~G~  285 (370)
T 4ej6_A          260 C-----AGVAETVKQSTRLAK-AGGTVVILGV  285 (370)
T ss_dssp             C-----SCCHHHHHHHHHHEE-EEEEEEECSC
T ss_pred             C-----CCCHHHHHHHHHHhc-cCCEEEEEec
Confidence            5     233568899999999 9999988654

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=96.72  E-value=0.0065  Score=52.87  Aligned_cols=101  Identities=14%  Similarity=0.048  Sum_probs=67.4

Q ss_pred             CCCCCeEEEEcCCc-chhHHHHHhc-C-CcEEEEcCCHHHHHHHHcCCCceEEecC---CccchhhhhhccCCCCceeEE
Q 024647           31 TTNHELAWDVGTGS-GQAAASLSGI-F-ENVIGTETSPKQIEFATKLPNIRYELTS---PAMSIAELEQNVAAQSTVDLV  104 (265)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~---~~~~~~d~~~~~~~~~~~Dlv  104 (265)
                      ..++++||-+|+|. |.++..+++. + .+|+++|.+++.++.++++.........   .......+.+. .....+|+|
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~v~~~-~~g~g~Dvv  271 (380)
T 1vj0_A          193 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDI-THGRGADFI  271 (380)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHH-TTTSCEEEE
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCCcEEEeccccCcchHHHHHHHH-hCCCCCcEE
Confidence            35678999999885 8888888875 5 4899999999999988875332333321   10000112222 123369999


Q ss_pred             EeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          105 TIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       105 ~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      +-...     ....+..+.+.|+ ++|+++....
T Consensus       272 id~~g-----~~~~~~~~~~~l~-~~G~iv~~G~  299 (380)
T 1vj0_A          272 LEATG-----DSRALLEGSELLR-RGGFYSVAGV  299 (380)
T ss_dssp             EECSS-----CTTHHHHHHHHEE-EEEEEEECCC
T ss_pred             EECCC-----CHHHHHHHHHHHh-cCCEEEEEec
Confidence            96532     2457889999999 9999987654

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=96.71  E-value=0.011  Score=50.69  Aligned_cols=99  Identities=17%  Similarity=0.097  Sum_probs=65.7

Q ss_pred             CCCeEEEEcCCc-chhHHHHHh-cCC-cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647           33 NHELAWDVGTGS-GQAAASLSG-IFE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA  109 (265)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~  109 (265)
                      ++++||-+|+|. |..+..+++ .++ +|+++|.++..++.++++................+.+. .....+|+|+....
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~-~~g~g~D~vid~~g  245 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDI-TDGNGVDVFLEFSG  245 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHH-TTTSCEEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHH-cCCCCCCEEEECCC
Confidence            678899999975 777777776 466 89999999998888876432222221111011122222 12346999997532


Q ss_pred             cccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          110 MHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       110 ~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                           ....++.+.+.|+ ++|+++....
T Consensus       246 -----~~~~~~~~~~~l~-~~G~iv~~g~  268 (348)
T 2d8a_A          246 -----APKALEQGLQAVT-PAGRVSLLGL  268 (348)
T ss_dssp             -----CHHHHHHHHHHEE-EEEEEEECCC
T ss_pred             -----CHHHHHHHHHHHh-cCCEEEEEcc
Confidence                 3467899999999 9999987554

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=96.70  E-value=0.0087  Score=51.23  Aligned_cols=100  Identities=11%  Similarity=0.086  Sum_probs=70.0

Q ss_pred             CCCCCeEEEEcCCc-chhHHHHHhc--CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647           31 TTNHELAWDVGTGS-GQAAASLSGI--FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIA  107 (265)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~  107 (265)
                      ..++++||-+|+|. |.++..+++.  +.+|+++|.+++-++.++++........... ....+.++. ....+|+|+-.
T Consensus       169 ~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~-~~~~v~~~t-~g~g~d~v~d~  246 (345)
T 3jv7_A          169 LGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAG-AADAIRELT-GGQGATAVFDF  246 (345)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECSTT-HHHHHHHHH-GGGCEEEEEES
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCCCc-HHHHHHHHh-CCCCCeEEEEC
Confidence            46778999999986 8888888875  4689999999999999987643333332211 111222221 23479999975


Q ss_pred             cccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                           ......++.+.+.|+ ++|++++...
T Consensus       247 -----~G~~~~~~~~~~~l~-~~G~iv~~G~  271 (345)
T 3jv7_A          247 -----VGAQSTIDTAQQVVA-VDGHISVVGI  271 (345)
T ss_dssp             -----SCCHHHHHHHHHHEE-EEEEEEECSC
T ss_pred             -----CCCHHHHHHHHHHHh-cCCEEEEECC
Confidence                 233568999999999 9999987654

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=96.68  E-value=0.016  Score=50.82  Aligned_cols=103  Identities=17%  Similarity=0.062  Sum_probs=67.1

Q ss_pred             CCCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647           31 TTNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIA  107 (265)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~  107 (265)
                      ..++++||-+|+|. |.++..+++. ++ +|+++|.++.-++.++++.....+..........+.++ .....+|+|+-.
T Consensus       211 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~-t~g~g~D~vid~  289 (404)
T 3ip1_A          211 IRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDY-TNGLGAKLFLEA  289 (404)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHH-TTTCCCSEEEEC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHH-hCCCCCCEEEEC
Confidence            35678899999986 7888888765 56 79999999999999887533233322111111222223 234479999965


Q ss_pred             cccccCChhHHHHHHHHHh----cCCCcEEEEEecC
Q 024647          108 QAMHWFDLPQFYNQVKWVL----KKPNGVIATWCYT  139 (265)
Q Consensus       108 ~~~~~~~~~~~l~~~~~~L----k~pgG~l~~~~~~  139 (265)
                      -.    .....+..+.++|    + ++|++++....
T Consensus       290 ~g----~~~~~~~~~~~~l~~~~~-~~G~iv~~G~~  320 (404)
T 3ip1_A          290 TG----VPQLVWPQIEEVIWRARG-INATVAIVARA  320 (404)
T ss_dssp             SS----CHHHHHHHHHHHHHHCSC-CCCEEEECSCC
T ss_pred             CC----CcHHHHHHHHHHHHhccC-CCcEEEEeCCC
Confidence            22    2234666777777    9 99999986543

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=96.65  E-value=0.0069  Score=52.34  Aligned_cols=99  Identities=14%  Similarity=0.014  Sum_probs=67.9

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA  109 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~  109 (265)
                      .++++||-+|+|. |.++..+++. +++|+++|.++..++.++++................+... .....+|+|+....
T Consensus       188 ~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~-~~g~g~D~vid~~g  266 (363)
T 3uog_A          188 RAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGADHGINRLEEDWVERVYAL-TGDRGADHILEIAG  266 (363)
T ss_dssp             CTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHH-HTTCCEEEEEEETT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCCEEEcCCcccHHHHHHHH-hCCCCceEEEECCC
Confidence            5678999999886 8888887764 6799999999999998887533223332211111222223 23447999996543


Q ss_pred             cccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          110 MHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       110 ~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                            ...+..+.+.|+ ++|++++...
T Consensus       267 ------~~~~~~~~~~l~-~~G~iv~~G~  288 (363)
T 3uog_A          267 ------GAGLGQSLKAVA-PDGRISVIGV  288 (363)
T ss_dssp             ------SSCHHHHHHHEE-EEEEEEEECC
T ss_pred             ------hHHHHHHHHHhh-cCCEEEEEec
Confidence                  346788899999 9999987654

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=96.60  E-value=0.0078  Score=51.50  Aligned_cols=97  Identities=15%  Similarity=0.104  Sum_probs=65.8

Q ss_pred             CCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647           33 NHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA  109 (265)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~  109 (265)
                      ++++||-+|+|. |..+..+++. ++ +|+++|.++..++.++++ ...............+.++.  ...+|+|+... 
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~~v~~~~~~~~~~~~~~~~--~~g~D~vid~~-  239 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-ADRLVNPLEEDLLEVVRRVT--GSGVEVLLEFS-  239 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CSEEECTTTSCHHHHHHHHH--SSCEEEEEECS-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HHhccCcCccCHHHHHHHhc--CCCCCEEEECC-
Confidence            678899999975 7777777764 66 899999999988888765 32233221111111222222  34699998653 


Q ss_pred             cccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          110 MHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       110 ~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                          .....++.+.+.|+ ++|+++....
T Consensus       240 ----g~~~~~~~~~~~l~-~~G~iv~~g~  263 (343)
T 2dq4_A          240 ----GNEAAIHQGLMALI-PGGEARILGI  263 (343)
T ss_dssp             ----CCHHHHHHHHHHEE-EEEEEEECCC
T ss_pred             ----CCHHHHHHHHHHHh-cCCEEEEEec
Confidence                23467899999999 9999987654

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=96.55  E-value=0.014  Score=49.82  Aligned_cols=99  Identities=13%  Similarity=0.105  Sum_probs=65.6

Q ss_pred             CCCCCeEEEEcCCc-chhHHHHHh-cCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           31 TTNHELAWDVGTGS-GQAAASLSG-IFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      ..++++||-+|+|. |..+..+++ .+++|+++|.++..++.++++.........-......+.+..   +.+|+|+...
T Consensus       162 ~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~---~~~d~vid~~  238 (339)
T 1rjw_A          162 AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKV---GGVHAAVVTA  238 (339)
T ss_dssp             CCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHH---SSEEEEEESS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHh---CCCCEEEECC
Confidence            45678999999974 777777765 467999999999999988864322222211100011122221   4699998653


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                           .....++.+.++|+ ++|+++....
T Consensus       239 -----g~~~~~~~~~~~l~-~~G~~v~~g~  262 (339)
T 1rjw_A          239 -----VSKPAFQSAYNSIR-RGGACVLVGL  262 (339)
T ss_dssp             -----CCHHHHHHHHHHEE-EEEEEEECCC
T ss_pred             -----CCHHHHHHHHHHhh-cCCEEEEecc
Confidence                 23467889999999 9999987554

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=96.53  E-value=0.016  Score=50.12  Aligned_cols=99  Identities=14%  Similarity=0.008  Sum_probs=66.9

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCC--ccchhhhhhccCCCCceeEEEe
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSP--AMSIAELEQNVAAQSTVDLVTI  106 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~Dlv~~  106 (265)
                      .++++||-+|+|. |.++..+++. ++ +|+++|.++..++.++++.........-  +.....+.+.  ..+.+|+|+-
T Consensus       190 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~--t~gg~Dvvid  267 (373)
T 1p0f_A          190 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEK--TNGGVDYAVE  267 (373)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHH--TTSCBSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHH--hCCCCCEEEE
Confidence            5678999999986 8888888764 56 7999999999999988753222222110  0011122222  1237999996


Q ss_pred             ccccccCChhHHHHHHHHHhcCCC-cEEEEEec
Q 024647          107 AQAMHWFDLPQFYNQVKWVLKKPN-GVIATWCY  138 (265)
Q Consensus       107 ~~~~~~~~~~~~l~~~~~~Lk~pg-G~l~~~~~  138 (265)
                      ..     .....+..+.++|+ ++ |+++....
T Consensus       268 ~~-----g~~~~~~~~~~~l~-~~~G~iv~~G~  294 (373)
T 1p0f_A          268 CA-----GRIETMMNALQSTY-CGSGVTVVLGL  294 (373)
T ss_dssp             CS-----CCHHHHHHHHHTBC-TTTCEEEECCC
T ss_pred             CC-----CCHHHHHHHHHHHh-cCCCEEEEEcc
Confidence            52     23467899999999 99 99987554

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=96.52  E-value=0.013  Score=51.03  Aligned_cols=77  Identities=10%  Similarity=0.006  Sum_probs=54.3

Q ss_pred             CeEEEEcCCcchhHHHHHhcCCc-EEEEcCCHHHHHHHHc-CCCceEEecCCccchh-hhhhccCCCCceeEEEeccccc
Q 024647           35 ELAWDVGTGSGQAAASLSGIFEN-VIGTETSPKQIEFATK-LPNIRYELTSPAMSIA-ELEQNVAAQSTVDLVTIAQAMH  111 (265)
Q Consensus        35 ~~vlDvGcG~G~~~~~l~~~~~~-v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~-d~~~~~~~~~~~Dlv~~~~~~~  111 (265)
                      .+++|+-||.|.++..+.+.+.+ +.++|+++..++..+. .++..+...++.-... ++.........+|+|+....+.
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpPCQ   82 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPPCQ   82 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCCCC
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCCCC
Confidence            57999999999999999998876 6799999999987764 4667777655422111 1111111346799999877543

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=96.49  E-value=0.011  Score=50.91  Aligned_cols=102  Identities=11%  Similarity=0.105  Sum_probs=67.8

Q ss_pred             CCCCCeEEEEcCCc-chhHHHHHhc-CCc-EEEEcCCHHHHHHHHcCC-Cc-eEEec--CCccchhhhhhccCCCCceeE
Q 024647           31 TTNHELAWDVGTGS-GQAAASLSGI-FEN-VIGTETSPKQIEFATKLP-NI-RYELT--SPAMSIAELEQNVAAQSTVDL  103 (265)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~-~~-~~~~~--~~~~~~~d~~~~~~~~~~~Dl  103 (265)
                      ..++++||-+|+|. |.++..+++. +++ |+++|.++.-++.++++. .+ .+...  ..+.....+... .....+|+
T Consensus       177 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~-t~g~g~Dv  255 (363)
T 3m6i_A          177 VRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVES-FGGIEPAV  255 (363)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHH-TSSCCCSE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhchhcccccccccchHHHHHHHHHH-hCCCCCCE
Confidence            45778899999986 8888888875 555 999999999999888652 11 11110  000001112222 23457999


Q ss_pred             EEeccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          104 VTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       104 v~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      |+-..     .....++.+.++|+ +||++++....
T Consensus       256 vid~~-----g~~~~~~~~~~~l~-~~G~iv~~G~~  285 (363)
T 3m6i_A          256 ALECT-----GVESSIAAAIWAVK-FGGKVFVIGVG  285 (363)
T ss_dssp             EEECS-----CCHHHHHHHHHHSC-TTCEEEECCCC
T ss_pred             EEECC-----CChHHHHHHHHHhc-CCCEEEEEccC
Confidence            99752     33457899999999 99999886543

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=96.48  E-value=0.015  Score=49.56  Aligned_cols=99  Identities=12%  Similarity=0.072  Sum_probs=66.4

Q ss_pred             CCCCeEEEEcC-C-cchhHHHHHh-cCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           32 TNHELAWDVGT-G-SGQAAASLSG-IFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        32 ~~~~~vlDvGc-G-~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      .++++||-.|+ | .|..+..+++ .+++|++++.++..++.++++................+... .....+|+|+.+.
T Consensus       147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~-~~~~g~D~vid~~  225 (334)
T 3qwb_A          147 KKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAEYLINASKEDILRQVLKF-TNGKGVDASFDSV  225 (334)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHH-TTTSCEEEEEECC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEEeCCCchHHHHHHHH-hCCCCceEEEECC
Confidence            56789999994 4 4777777766 46799999999999998887543333332211111222222 2345799999754


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      .      ...++.+.+.|+ ++|+++....
T Consensus       226 g------~~~~~~~~~~l~-~~G~iv~~G~  248 (334)
T 3qwb_A          226 G------KDTFEISLAALK-RKGVFVSFGN  248 (334)
T ss_dssp             G------GGGHHHHHHHEE-EEEEEEECCC
T ss_pred             C------hHHHHHHHHHhc-cCCEEEEEcC
Confidence            3      257888999999 9999987553

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.46  E-value=0.005  Score=52.85  Aligned_cols=91  Identities=15%  Similarity=0.034  Sum_probs=66.0

Q ss_pred             CCCCCeEEEEcCCc-chhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           31 TTNHELAWDVGTGS-GQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      ..++++||-+|+|. |.++..+++. +++|+++|.++..++.++++..-... .+       .+.+  .. .+|+|+-..
T Consensus       174 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~-~~-------~~~~--~~-~~D~vid~~  242 (348)
T 3two_A          174 VTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFY-TD-------PKQC--KE-ELDFIISTI  242 (348)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEE-SS-------GGGC--CS-CEEEEEECC
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeec-CC-------HHHH--hc-CCCEEEECC
Confidence            45778999999986 8888888764 67999999999999999875433333 21       1222  12 799998643


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      .     ....++.+.+.|+ ++|++++...
T Consensus       243 g-----~~~~~~~~~~~l~-~~G~iv~~G~  266 (348)
T 3two_A          243 P-----THYDLKDYLKLLT-YNGDLALVGL  266 (348)
T ss_dssp             C-----SCCCHHHHHTTEE-EEEEEEECCC
T ss_pred             C-----cHHHHHHHHHHHh-cCCEEEEECC
Confidence            2     2347888999999 9999998654

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=96.37  E-value=0.048  Score=46.43  Aligned_cols=102  Identities=13%  Similarity=0.052  Sum_probs=67.8

Q ss_pred             CCCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647           31 TTNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIA  107 (265)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~  107 (265)
                      ..++++||-.|+|. |.++..+++. ++ .++++|.++.-++.++++.........-.........+ .....+|+|+..
T Consensus       158 ~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~-~~~~g~d~v~d~  236 (346)
T 4a2c_A          158 GCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVL-RELRFNQLILET  236 (346)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHH-GGGCSSEEEEEC
T ss_pred             cCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeEEEeCCCCCHHHHHHhh-cccCCccccccc
Confidence            35778999999986 6677777765 44 47899999999999988644444432221111111222 233467888764


Q ss_pred             cccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                           ......++.+.++|+ +||.+++....
T Consensus       237 -----~G~~~~~~~~~~~l~-~~G~~v~~g~~  262 (346)
T 4a2c_A          237 -----AGVPQTVELAVEIAG-PHAQLALVGTL  262 (346)
T ss_dssp             -----SCSHHHHHHHHHHCC-TTCEEEECCCC
T ss_pred             -----ccccchhhhhhheec-CCeEEEEEecc
Confidence                 234578899999999 99999876543

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=96.36  E-value=0.025  Score=48.91  Aligned_cols=99  Identities=12%  Similarity=0.002  Sum_probs=66.2

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCC--ccchhhhhhccCCCCceeEEEe
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSP--AMSIAELEQNVAAQSTVDLVTI  106 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~Dlv~~  106 (265)
                      .++++||-+|+|. |.++..+++. ++ +|+++|.++..++.++++.........-  +.....+..+  ..+.+|+|+-
T Consensus       190 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~--~~~g~D~vid  267 (374)
T 2jhf_A          190 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEM--SNGGVDFSFE  267 (374)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHH--TTSCBSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHH--hCCCCcEEEE
Confidence            5678999999986 7888888764 56 6999999999999888753222222110  0001112222  1247999986


Q ss_pred             ccccccCChhHHHHHHHHHhcCCC-cEEEEEec
Q 024647          107 AQAMHWFDLPQFYNQVKWVLKKPN-GVIATWCY  138 (265)
Q Consensus       107 ~~~~~~~~~~~~l~~~~~~Lk~pg-G~l~~~~~  138 (265)
                      ..     .....+..+.+.|+ ++ |++++...
T Consensus       268 ~~-----g~~~~~~~~~~~l~-~~~G~iv~~G~  294 (374)
T 2jhf_A          268 VI-----GRLDTMVTALSCCQ-EAYGVSVIVGV  294 (374)
T ss_dssp             CS-----CCHHHHHHHHHHBC-TTTCEEEECSC
T ss_pred             CC-----CCHHHHHHHHHHhh-cCCcEEEEecc
Confidence            52     23467899999999 99 99987654

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=96.34  E-value=0.018  Score=49.80  Aligned_cols=99  Identities=14%  Similarity=0.040  Sum_probs=66.1

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCC--ccchhhhhhccCCCCceeEEEe
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSP--AMSIAELEQNVAAQSTVDLVTI  106 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~Dlv~~  106 (265)
                      .++++||-+|+|. |.++..+++. ++ +|+++|.++..++.++++.........-  +.....+....  .+.+|+|+-
T Consensus       191 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~--~~g~D~vid  268 (374)
T 1cdo_A          191 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMT--NGGVDFSLE  268 (374)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHH--TSCBSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHh--CCCCCEEEE
Confidence            5678999999986 7888888765 55 6999999999999888753222222110  00011122221  237999986


Q ss_pred             ccccccCChhHHHHHHHHHhcCCC-cEEEEEec
Q 024647          107 AQAMHWFDLPQFYNQVKWVLKKPN-GVIATWCY  138 (265)
Q Consensus       107 ~~~~~~~~~~~~l~~~~~~Lk~pg-G~l~~~~~  138 (265)
                      ..     .....++.+.++|+ ++ |++++...
T Consensus       269 ~~-----g~~~~~~~~~~~l~-~~~G~iv~~G~  295 (374)
T 1cdo_A          269 CV-----GNVGVMRNALESCL-KGWGVSVLVGW  295 (374)
T ss_dssp             CS-----CCHHHHHHHHHTBC-TTTCEEEECSC
T ss_pred             CC-----CCHHHHHHHHHHhh-cCCcEEEEEcC
Confidence            52     23467899999999 99 99987654

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=96.33  E-value=0.013  Score=49.72  Aligned_cols=99  Identities=15%  Similarity=0.111  Sum_probs=66.2

Q ss_pred             CCCCeEEEEc-CC-cchhHHHHHh-cCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           32 TNHELAWDVG-TG-SGQAAASLSG-IFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        32 ~~~~~vlDvG-cG-~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      .++++||-.| +| .|..+..+++ .+++|++++.++..++.++++................+.+. .....+|+|+.+.
T Consensus       139 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~-~~~~g~Dvvid~~  217 (325)
T 3jyn_A          139 KPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLEL-TDGKKCPVVYDGV  217 (325)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHH-TTTCCEEEEEESS
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHH-hCCCCceEEEECC
Confidence            5678999999 44 4777777776 47799999999999998886432223322211111222222 2345799999754


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      .      ...+..+.+.|+ ++|+++....
T Consensus       218 g------~~~~~~~~~~l~-~~G~iv~~g~  240 (325)
T 3jyn_A          218 G------QDTWLTSLDSVA-PRGLVVSFGN  240 (325)
T ss_dssp             C------GGGHHHHHTTEE-EEEEEEECCC
T ss_pred             C------hHHHHHHHHHhc-CCCEEEEEec
Confidence            3      256788899999 9999988654

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.32  E-value=0.0092  Score=51.71  Aligned_cols=95  Identities=19%  Similarity=0.183  Sum_probs=65.9

Q ss_pred             CCCCCeEEEEcCCc-chhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhh-hhhccCCCCceeEEEec
Q 024647           31 TTNHELAWDVGTGS-GQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAE-LEQNVAAQSTVDLVTIA  107 (265)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~Dlv~~~  107 (265)
                      ..++++||-+|+|. |.++..+++. +++|+++|.++..++.++++.........-    .+ ++.+.   +.+|+|+..
T Consensus       192 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~----~~~~~~~~---~g~Dvvid~  264 (369)
T 1uuf_A          192 AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRN----ADEMAAHL---KSFDFILNT  264 (369)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTC----HHHHHTTT---TCEEEEEEC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEecccc----HHHHHHhh---cCCCEEEEC
Confidence            45778999999986 8888888764 568999999999999888643222332211    12 22221   579999865


Q ss_pred             cccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      ..     ....++.+.+.|+ ++|+++....
T Consensus       265 ~g-----~~~~~~~~~~~l~-~~G~iv~~G~  289 (369)
T 1uuf_A          265 VA-----APHNLDDFTTLLK-RDGTMTLVGA  289 (369)
T ss_dssp             CS-----SCCCHHHHHTTEE-EEEEEEECCC
T ss_pred             CC-----CHHHHHHHHHHhc-cCCEEEEecc
Confidence            32     2345788899999 9999987554

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=96.32  E-value=0.018  Score=49.03  Aligned_cols=99  Identities=14%  Similarity=0.037  Sum_probs=66.3

Q ss_pred             CCCCCeEEEEcC--CcchhHHHHHh-cCCcEEEEcCCHHHHHHH-HcCCCceEEecCCccchhhhhhccCCCCceeEEEe
Q 024647           31 TTNHELAWDVGT--GSGQAAASLSG-IFENVIGTETSPKQIEFA-TKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTI  106 (265)
Q Consensus        31 ~~~~~~vlDvGc--G~G~~~~~l~~-~~~~v~~vD~s~~~~~~a-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~  106 (265)
                      ..++++||-.||  |.|..+..+++ .+++|+++|.+++.++.+ +++................+.+..  .+.+|+|+.
T Consensus       147 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~d~vi~  224 (336)
T 4b7c_A          147 PKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKREC--PKGIDVFFD  224 (336)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHC--TTCEEEEEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhc--CCCceEEEE
Confidence            357789999998  34777777765 467999999999999988 654322222221111112222332  357999987


Q ss_pred             ccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          107 AQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       107 ~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      +..      ...+..+.+.|+ ++|++++...
T Consensus       225 ~~g------~~~~~~~~~~l~-~~G~iv~~G~  249 (336)
T 4b7c_A          225 NVG------GEILDTVLTRIA-FKARIVLCGA  249 (336)
T ss_dssp             SSC------HHHHHHHHTTEE-EEEEEEECCC
T ss_pred             CCC------cchHHHHHHHHh-hCCEEEEEee
Confidence            543      247889999999 9999987543

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=96.29  E-value=0.02  Score=49.50  Aligned_cols=99  Identities=12%  Similarity=0.013  Sum_probs=66.0

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCC--ccchhhhhhccCCCCceeEEEe
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSP--AMSIAELEQNVAAQSTVDLVTI  106 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~Dlv~~  106 (265)
                      .++++||-+|+|. |.++..+++. ++ +|+++|.++..++.++++.........-  ......+.++  ..+.+|+|+-
T Consensus       189 ~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~--~~~g~D~vid  266 (373)
T 2fzw_A          189 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEM--TDGGVDYSFE  266 (373)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHH--TTSCBSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHH--hCCCCCEEEE
Confidence            5678999999886 7888888764 56 7999999999999888643222222110  0001122222  1247999986


Q ss_pred             ccccccCChhHHHHHHHHHhcCCC-cEEEEEec
Q 024647          107 AQAMHWFDLPQFYNQVKWVLKKPN-GVIATWCY  138 (265)
Q Consensus       107 ~~~~~~~~~~~~l~~~~~~Lk~pg-G~l~~~~~  138 (265)
                      ..     .....++.+.+.|+ ++ |++++...
T Consensus       267 ~~-----g~~~~~~~~~~~l~-~~~G~iv~~G~  293 (373)
T 2fzw_A          267 CI-----GNVKVMRAALEACH-KGWGVSVVVGV  293 (373)
T ss_dssp             CS-----CCHHHHHHHHHTBC-TTTCEEEECSC
T ss_pred             CC-----CcHHHHHHHHHhhc-cCCcEEEEEec
Confidence            52     23467899999999 99 99987654

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=96.29  E-value=0.012  Score=50.23  Aligned_cols=99  Identities=19%  Similarity=0.092  Sum_probs=63.8

Q ss_pred             CCCCeEEEEcCC--cchhHHHHHh-cCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           32 TNHELAWDVGTG--SGQAAASLSG-IFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        32 ~~~~~vlDvGcG--~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      .++++||-+|||  .|..+..+++ .+++|+++|.++..++.++++................+... .....+|+|+.+.
T Consensus       143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~-~~~~g~Dvvid~~  221 (340)
T 3gms_A          143 QRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMEL-TNGIGADAAIDSI  221 (340)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHHHHH-TTTSCEEEEEESS
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHHHHH-hCCCCCcEEEECC
Confidence            567899999997  4777777765 57799999999998888876432223322211111122222 2345799999753


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      .     . ..+.+..+.|+ ++|+++....
T Consensus       222 g-----~-~~~~~~~~~l~-~~G~iv~~G~  244 (340)
T 3gms_A          222 G-----G-PDGNELAFSLR-PNGHFLTIGL  244 (340)
T ss_dssp             C-----H-HHHHHHHHTEE-EEEEEEECCC
T ss_pred             C-----C-hhHHHHHHHhc-CCCEEEEEee
Confidence            2     1 23344558999 9999987654

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=96.26  E-value=0.014  Score=49.91  Aligned_cols=97  Identities=11%  Similarity=0.038  Sum_probs=65.8

Q ss_pred             CCCeEEEEcCCc-chhHHHHHhc---CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           33 NHELAWDVGTGS-GQAAASLSGI---FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      ++++||-+|+|. |.++..+++.   +++|+++|.++..++.++++.........-  .....+.+. ....+|+|+...
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~--~~~~~~~~~-~g~g~D~vid~~  246 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKD--AESLINKLT-DGLGASIAIDLV  246 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHHH--HHHHHHHHH-TTCCEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEecccc--chHHHHHhh-cCCCccEEEECC
Confidence            778999999986 7778887764   578999999999999887643222222100  001122221 233799999753


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                           .....++.+.++|+ ++|+++....
T Consensus       247 -----g~~~~~~~~~~~l~-~~G~iv~~g~  270 (344)
T 2h6e_A          247 -----GTEETTYNLGKLLA-QEGAIILVGM  270 (344)
T ss_dssp             -----CCHHHHHHHHHHEE-EEEEEEECCC
T ss_pred             -----CChHHHHHHHHHhh-cCCEEEEeCC
Confidence                 23457899999999 9999987554

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=96.25  E-value=0.024  Score=49.08  Aligned_cols=99  Identities=14%  Similarity=-0.018  Sum_probs=66.4

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCC--ccchhhhhhccCCCCceeEEEe
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSP--AMSIAELEQNVAAQSTVDLVTI  106 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~Dlv~~  106 (265)
                      .++++||-+|+|. |.++..+++. ++ +|+++|.++..++.++++.........-  +.....+..+. . +.+|+|+-
T Consensus       194 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~-~-~g~Dvvid  271 (376)
T 1e3i_A          194 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELT-A-GGVDYSLD  271 (376)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHH-T-SCBSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHh-C-CCccEEEE
Confidence            4678999999986 8888888875 56 6999999999999888753222222110  00011122221 2 37999986


Q ss_pred             ccccccCChhHHHHHHHHHhcCCC-cEEEEEec
Q 024647          107 AQAMHWFDLPQFYNQVKWVLKKPN-GVIATWCY  138 (265)
Q Consensus       107 ~~~~~~~~~~~~l~~~~~~Lk~pg-G~l~~~~~  138 (265)
                      ..     .....++.+.++|+ ++ |++++...
T Consensus       272 ~~-----G~~~~~~~~~~~l~-~~~G~iv~~G~  298 (376)
T 1e3i_A          272 CA-----GTAQTLKAAVDCTV-LGWGSCTVVGA  298 (376)
T ss_dssp             SS-----CCHHHHHHHHHTBC-TTTCEEEECCC
T ss_pred             CC-----CCHHHHHHHHHHhh-cCCCEEEEECC
Confidence            52     23467899999999 99 99987654

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=96.25  E-value=0.029  Score=47.90  Aligned_cols=101  Identities=15%  Similarity=0.151  Sum_probs=65.4

Q ss_pred             CCCCCeEEEEcCCc-chhHHHHHh-c-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647           31 TTNHELAWDVGTGS-GQAAASLSG-I-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIA  107 (265)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~  107 (265)
                      ..++++||-+|+|+ |.++..+++ . +.+|+++|.+++-++.+++......+...-......+.+. .....+|.++..
T Consensus       161 ~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~~~~~~~v~~~-t~g~g~d~~~~~  239 (348)
T 4eez_A          161 VKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSGDVNPVDEIKKI-TGGLGVQSAIVC  239 (348)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-CCCHHHHHHHH-TTSSCEEEEEEC
T ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCCCCCHHHHhhhh-cCCCCceEEEEe
Confidence            35778999999997 455555554 3 4689999999999988887543333332211111222333 234457777653


Q ss_pred             cccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                           ......+..+.+.|+ ++|++++...
T Consensus       240 -----~~~~~~~~~~~~~l~-~~G~~v~~g~  264 (348)
T 4eez_A          240 -----AVARIAFEQAVASLK-PMGKMVAVAV  264 (348)
T ss_dssp             -----CSCHHHHHHHHHTEE-EEEEEEECCC
T ss_pred             -----ccCcchhheeheeec-CCceEEEEec
Confidence                 223568899999999 9999987554

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=96.22  E-value=0.022  Score=48.38  Aligned_cols=98  Identities=15%  Similarity=0.054  Sum_probs=63.7

Q ss_pred             CCCCeEEEEcC--CcchhHHHHHh-cCCcEEEEcCCHHHHHHHHcCCCceEEecCC-ccchhhhhhccCCCCceeEEEec
Q 024647           32 TNHELAWDVGT--GSGQAAASLSG-IFENVIGTETSPKQIEFATKLPNIRYELTSP-AMSIAELEQNVAAQSTVDLVTIA  107 (265)
Q Consensus        32 ~~~~~vlDvGc--G~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~Dlv~~~  107 (265)
                      .++++||-.||  |.|..+..+++ .+++|+++|.++..++.++++.........- +.....+.... . +.+|+++.+
T Consensus       144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~-~-~~~d~vi~~  221 (333)
T 1v3u_A          144 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKAS-P-DGYDCYFDN  221 (333)
T ss_dssp             CSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHC-T-TCEEEEEES
T ss_pred             CCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCcEEEecCCHHHHHHHHHHHh-C-CCCeEEEEC
Confidence            56789999998  44666666654 5679999999999888886543212222111 11112222221 2 579999876


Q ss_pred             cccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      ..      ...+..+.+.|+ +||++++...
T Consensus       222 ~g------~~~~~~~~~~l~-~~G~~v~~g~  245 (333)
T 1v3u_A          222 VG------GEFLNTVLSQMK-DFGKIAICGA  245 (333)
T ss_dssp             SC------HHHHHHHHTTEE-EEEEEEECCC
T ss_pred             CC------hHHHHHHHHHHh-cCCEEEEEec
Confidence            44      245888899999 9999987554

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=96.13  E-value=0.029  Score=47.99  Aligned_cols=96  Identities=22%  Similarity=0.291  Sum_probs=65.0

Q ss_pred             CCCeEEEE-cCCc-chhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647           33 NHELAWDV-GTGS-GQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA  109 (265)
Q Consensus        33 ~~~~vlDv-GcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~  109 (265)
                      ++++||-. |+|. |..+..+++. +++|++++.++.-++.++++.........- .....+.+.  ..+.+|+|+..  
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~-~~~~~~~~~--~~~g~Dvv~d~--  224 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGADIVLNHKE-SLLNQFKTQ--GIELVDYVFCT--  224 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTCSEEECTTS-CHHHHHHHH--TCCCEEEEEES--
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEECCc-cHHHHHHHh--CCCCccEEEEC--
Confidence            67889998 5664 7888777764 679999999999999888743222222111 111223333  34579999964  


Q ss_pred             cccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647          110 MHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       110 ~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                         ......++.+.++|+ ++|+++...
T Consensus       225 ---~g~~~~~~~~~~~l~-~~G~iv~~~  248 (346)
T 3fbg_A          225 ---FNTDMYYDDMIQLVK-PRGHIATIV  248 (346)
T ss_dssp             ---SCHHHHHHHHHHHEE-EEEEEEESS
T ss_pred             ---CCchHHHHHHHHHhc-cCCEEEEEC
Confidence               234567899999999 999997643

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=96.12  E-value=0.029  Score=48.24  Aligned_cols=93  Identities=22%  Similarity=0.191  Sum_probs=63.3

Q ss_pred             CeEEEEcCCc-chhH-HHHH-hc-CCc-EEEEcCCHH---HHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEe
Q 024647           35 ELAWDVGTGS-GQAA-ASLS-GI-FEN-VIGTETSPK---QIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTI  106 (265)
Q Consensus        35 ~~vlDvGcG~-G~~~-~~l~-~~-~~~-v~~vD~s~~---~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~  106 (265)
                      ++||-+|+|. |.++ ..++ +. +++ |+++|.+++   .++.++++. .......-..... +.++   .+.+|+|+-
T Consensus       174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lG-a~~v~~~~~~~~~-i~~~---~gg~Dvvid  248 (357)
T 2b5w_A          174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELD-ATYVDSRQTPVED-VPDV---YEQMDFIYE  248 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTT-CEEEETTTSCGGG-HHHH---SCCEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcC-CcccCCCccCHHH-HHHh---CCCCCEEEE
Confidence            8999999976 8888 8888 64 566 999999988   888887653 2222211100111 2233   237999986


Q ss_pred             ccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          107 AQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       107 ~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      ..     .....++.+.++|+ ++|+++....
T Consensus       249 ~~-----g~~~~~~~~~~~l~-~~G~iv~~g~  274 (357)
T 2b5w_A          249 AT-----GFPKHAIQSVQALA-PNGVGALLGV  274 (357)
T ss_dssp             CS-----CCHHHHHHHHHHEE-EEEEEEECCC
T ss_pred             CC-----CChHHHHHHHHHHh-cCCEEEEEeC
Confidence            52     23457899999999 9999987554

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=96.02  E-value=0.0089  Score=50.84  Aligned_cols=56  Identities=18%  Similarity=0.154  Sum_probs=49.5

Q ss_pred             CCcHHHHHHHHhh-CCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCH---HHHHHHHc
Q 024647           18 NYPEELFKFITSK-TTNHELAWDVGTGSGQAAASLSGIFENVIGTETSP---KQIEFATK   73 (265)
Q Consensus        18 ~y~~~l~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~---~~~~~a~~   73 (265)
                      .+|.++++.+... .++++.|||--||+|+.+.+..+.+.+.+|+|+++   ..++.+++
T Consensus       226 ~kp~~l~~~~i~~~~~~~~~vlDpF~GsGtt~~aa~~~~r~~ig~e~~~~~~~~~~~~~~  285 (319)
T 1eg2_A          226 QKPAAVIERLVRALSHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLT  285 (319)
T ss_dssp             CCCHHHHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCCCEEEecCCCCCHHHHHHHHcCCcEEEEECCccHHHHHHHHHH
Confidence            4688999988765 46789999999999999999999999999999999   88888774

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=95.95  E-value=0.089  Score=44.90  Aligned_cols=102  Identities=10%  Similarity=0.128  Sum_probs=64.3

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcCCc--EEEEcCCHHHHHHHHc----C-----------------------CCceEEecC
Q 024647           33 NHELAWDVGTGSGQAAASLSGIFEN--VIGTETSPKQIEFATK----L-----------------------PNIRYELTS   83 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~~--v~~vD~s~~~~~~a~~----~-----------------------~~~~~~~~~   83 (265)
                      +...|+.+|||.......+...++.  ++-||. |.+++.-++    .                       .+..++..+
T Consensus        97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D  175 (334)
T 1rjd_A           97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD  175 (334)
T ss_dssp             SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred             CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence            4467999999999999999876554  555665 666553322    1                       345666655


Q ss_pred             Cccchh--h-hhhccCCCCceeEEEeccccccCChh---HHHHHHHHHhcCCCcEEEEEec
Q 024647           84 PAMSIA--E-LEQNVAAQSTVDLVTIAQAMHWFDLP---QFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        84 ~~~~~~--d-~~~~~~~~~~~Dlv~~~~~~~~~~~~---~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      .+...-  . +...+ ..+...++++-.+++|++++   .+++.+.+..  |+|.+++...
T Consensus       176 L~d~~w~~~ll~~~~-d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~--~~~~~v~~e~  233 (334)
T 1rjd_A          176 LNDITETTRLLDVCT-KREIPTIVISECLLCYMHNNESQLLINTIMSKF--SHGLWISYDP  233 (334)
T ss_dssp             TTCHHHHHHHHHTTC-CTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC--SSEEEEEEEE
T ss_pred             CCCcHHHHHHHHhcC-CCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC--CCcEEEEEec
Confidence            432100  0 12232 33567889999999999766   4566666654  5777765544

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=95.94  E-value=0.064  Score=43.98  Aligned_cols=119  Identities=7%  Similarity=0.077  Sum_probs=74.4

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhc---------CCcEEEEc-----CCH----------------------HHHHHH-H--
Q 024647           32 TNHELAWDVGTGSGQAAASLSGI---------FENVIGTE-----TSP----------------------KQIEFA-T--   72 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~---------~~~v~~vD-----~s~----------------------~~~~~a-~--   72 (265)
                      .-+..|+|+||-.|..+..++..         ..+|++.|     +.+                      ..++.. +  
T Consensus        68 ~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~  147 (257)
T 3tos_A           68 DVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAH  147 (257)
T ss_dssp             TSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHH
T ss_pred             CCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHH
Confidence            44678999999999988887541         24699999     432                      111111 0  


Q ss_pred             ----c----CCCceEEecCCccchhhhhhc--cCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecCCCC
Q 024647           73 ----K----LPNIRYELTSPAMSIAELEQN--VAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTVPE  142 (265)
Q Consensus        73 ----~----~~~~~~~~~~~~~~~~d~~~~--~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~  142 (265)
                          .    ..++.++.+....+   +..+  ..+.+++|+|....-. +-.....++.+...|+ |||++++-++..+.
T Consensus       148 ~~~~~~g~~~~~i~li~G~~~dT---L~~~l~~~~~~~~dlv~ID~D~-Y~~t~~~le~~~p~l~-~GGvIv~DD~~~~~  222 (257)
T 3tos_A          148 ECSDFFGHVTQRSVLVEGDVRET---VPRYLAENPQTVIALAYFDLDL-YEPTKAVLEAIRPYLT-KGSIVAFDELDNPK  222 (257)
T ss_dssp             HTTSTTTTSCCSEEEEESCHHHH---HHHHHHHCTTCCEEEEEECCCC-HHHHHHHHHHHGGGEE-EEEEEEESSTTCTT
T ss_pred             hhhhhcCCCCCcEEEEEecHHHH---HHHHHHhCCCCceEEEEEcCcc-cchHHHHHHHHHHHhC-CCcEEEEcCCCCCC
Confidence                1    15677777554211   1111  0245579999987531 2234457888999999 99999997775444


Q ss_pred             CChHHHHhhccccc
Q 024647          143 VNVSVDAVFQPFYT  156 (265)
Q Consensus       143 ~~~~~~~~~~~~~~  156 (265)
                      + +...+++.++..
T Consensus       223 w-~G~~~A~~ef~~  235 (257)
T 3tos_A          223 W-PGENIAMRKVLG  235 (257)
T ss_dssp             C-THHHHHHHHHTC
T ss_pred             C-hHHHHHHHHHHh
Confidence            4 356666666655

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=95.93  E-value=0.021  Score=48.82  Aligned_cols=100  Identities=10%  Similarity=0.016  Sum_probs=64.9

Q ss_pred             CCCCCeEEEEcC--CcchhHHHHHh-cCCcEEEEcCCHHHHHHHHcCCCceEEecC-CccchhhhhhccCCCCceeEEEe
Q 024647           31 TTNHELAWDVGT--GSGQAAASLSG-IFENVIGTETSPKQIEFATKLPNIRYELTS-PAMSIAELEQNVAAQSTVDLVTI  106 (265)
Q Consensus        31 ~~~~~~vlDvGc--G~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~Dlv~~  106 (265)
                      ..++++||-.|+  |.|..+..+++ .+++|+++|.++..++.+++.......... .+.....+.... .. .+|+|+.
T Consensus       167 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~-~~-~~D~vi~  244 (347)
T 2hcy_A          167 LMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKAT-DG-GAHGVIN  244 (347)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHH-TS-CEEEEEE
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHh-CC-CCCEEEE
Confidence            356789999999  35777766665 567999999999888887764322222211 111111222221 22 6999987


Q ss_pred             ccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          107 AQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       107 ~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      +..     ....++.+.+.|+ ++|+++....
T Consensus       245 ~~g-----~~~~~~~~~~~l~-~~G~iv~~g~  270 (347)
T 2hcy_A          245 VSV-----SEAAIEASTRYVR-ANGTTVLVGM  270 (347)
T ss_dssp             CSS-----CHHHHHHHTTSEE-EEEEEEECCC
T ss_pred             CCC-----cHHHHHHHHHHHh-cCCEEEEEeC
Confidence            643     3468899999999 9999987554

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=95.90  E-value=0.022  Score=48.74  Aligned_cols=101  Identities=17%  Similarity=0.117  Sum_probs=64.9

Q ss_pred             CCCCCeEEEEcCC--cchhHHHHHh-c-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEe
Q 024647           31 TTNHELAWDVGTG--SGQAAASLSG-I-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTI  106 (265)
Q Consensus        31 ~~~~~~vlDvGcG--~G~~~~~l~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~  106 (265)
                      ..++++||-.|+|  .|..+..+++ . +++|+++|.++..++.++++.........-......+..+. ..+.+|+|+.
T Consensus       168 ~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~d~vi~  246 (347)
T 1jvb_A          168 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRIT-ESKGVDAVID  246 (347)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHT-TTSCEEEEEE
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCEEecCCCccHHHHHHHHh-cCCCceEEEE
Confidence            4577899999998  4566666654 4 78999999999998888764222222211100001122221 1147999986


Q ss_pred             ccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          107 AQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       107 ~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      +..     ....++.+.++|+ ++|+++....
T Consensus       247 ~~g-----~~~~~~~~~~~l~-~~G~iv~~g~  272 (347)
T 1jvb_A          247 LNN-----SEKTLSVYPKALA-KQGKYVMVGL  272 (347)
T ss_dssp             SCC-----CHHHHTTGGGGEE-EEEEEEECCS
T ss_pred             CCC-----CHHHHHHHHHHHh-cCCEEEEECC
Confidence            532     3457888899999 9999987544

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=95.88  E-value=0.031  Score=47.71  Aligned_cols=99  Identities=16%  Similarity=0.043  Sum_probs=64.7

Q ss_pred             CCCCeEEEEcC--CcchhHHHHHh-cCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           32 TNHELAWDVGT--GSGQAAASLSG-IFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        32 ~~~~~vlDvGc--G~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      .++++||-.|+  |.|..+..+++ .+.+|+++|.++..++.++++.........-......+.+. .....+|+|+.+.
T Consensus       165 ~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~-~~~~~~d~vi~~~  243 (343)
T 2eih_A          165 RPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGADETVNYTHPDWPKEVRRL-TGGKGADKVVDHT  243 (343)
T ss_dssp             CTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTSTTHHHHHHHH-TTTTCEEEEEESS
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEcCCcccHHHHHHHH-hCCCCceEEEECC
Confidence            46789999998  45777777765 46799999999999888875322222221110001112222 1234799999764


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      .      ...++.+.+.|+ ++|+++....
T Consensus       244 g------~~~~~~~~~~l~-~~G~~v~~g~  266 (343)
T 2eih_A          244 G------ALYFEGVIKATA-NGGRIAIAGA  266 (343)
T ss_dssp             C------SSSHHHHHHHEE-EEEEEEESSC
T ss_pred             C------HHHHHHHHHhhc-cCCEEEEEec
Confidence            3      346788899999 9999987544

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=95.88  E-value=0.04  Score=47.27  Aligned_cols=99  Identities=13%  Similarity=0.082  Sum_probs=64.0

Q ss_pred             CCCCeEEEEcC--CcchhHHHHHh-cCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           32 TNHELAWDVGT--GSGQAAASLSG-IFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        32 ~~~~~vlDvGc--G~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      .++++||-.|+  |.|..+..+++ .+++|++++.+++.++.++++.........-......+.+. .....+|+|+.+.
T Consensus       169 ~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~-~~~~~~D~vi~~~  247 (351)
T 1yb5_A          169 KAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKY-VGEKGIDIIIEML  247 (351)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHH-HCTTCEEEEEESC
T ss_pred             CCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHcCCCEEEeCCCchHHHHHHHH-cCCCCcEEEEECC
Confidence            56789999997  34666666665 56799999999998888876532222221111001112222 1234799998764


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      .      ...+..+.+.|+ ++|++++...
T Consensus       248 G------~~~~~~~~~~l~-~~G~iv~~g~  270 (351)
T 1yb5_A          248 A------NVNLSKDLSLLS-HGGRVIVVGS  270 (351)
T ss_dssp             H------HHHHHHHHHHEE-EEEEEEECCC
T ss_pred             C------hHHHHHHHHhcc-CCCEEEEEec
Confidence            3      246788899999 9999987653

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=95.84  E-value=0.0064  Score=52.28  Aligned_cols=87  Identities=13%  Similarity=0.141  Sum_probs=57.9

Q ss_pred             CCeEEEEcCCcchhHHHHHhcC--C-cEEEEcCCHHHHHHHHc-CCCceEEecCCccchhhhhhcc---CCCCceeEEEe
Q 024647           34 HELAWDVGTGSGQAAASLSGIF--E-NVIGTETSPKQIEFATK-LPNIRYELTSPAMSIAELEQNV---AAQSTVDLVTI  106 (265)
Q Consensus        34 ~~~vlDvGcG~G~~~~~l~~~~--~-~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~---~~~~~~Dlv~~  106 (265)
                      ..+++|+-||.|.++..+.+.+  . .|.++|+++..++..+. .++..+...+       +.++.   ++...+|+|+.
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~D-------i~~~~~~~~~~~~~D~l~~   74 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKT-------IEGITLEEFDRLSFDMILM   74 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSC-------GGGCCHHHHHHHCCSEEEE
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCC-------HHHccHhHcCcCCcCEEEE
Confidence            3579999999999999999887  3 48999999999998775 4555556644       33331   11125899999


Q ss_pred             ccccccC----------C-hhHHHHHHHHHhc
Q 024647          107 AQAMHWF----------D-LPQFYNQVKWVLK  127 (265)
Q Consensus       107 ~~~~~~~----------~-~~~~l~~~~~~Lk  127 (265)
                      ...+.-+          | ...++.++.++++
T Consensus        75 gpPCq~fS~ag~~~g~~d~r~~l~~~~~~~i~  106 (343)
T 1g55_A           75 SPPCQPFTRIGRQGDMTDSRTNSFLHILDILP  106 (343)
T ss_dssp             CCC------------------CHHHHHHHHGG
T ss_pred             cCCCcchhhcCCcCCccCccchHHHHHHHHHH
Confidence            7754322          1 1135666777775

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=95.81  E-value=0.028  Score=48.22  Aligned_cols=98  Identities=18%  Similarity=0.154  Sum_probs=64.7

Q ss_pred             CCCCeEEEEc-CC-cchhHHHHHh-cCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           32 TNHELAWDVG-TG-SGQAAASLSG-IFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        32 ~~~~~vlDvG-cG-~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      .++++||-.| +| .|..+..+++ .+++|+++|.++..++.++++................+....  .+.+|+|+.+.
T Consensus       166 ~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~--~~g~Dvvid~~  243 (353)
T 4dup_A          166 TEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAKRGINYRSEDFAAVIKAET--GQGVDIILDMI  243 (353)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHH--SSCEEEEEESC
T ss_pred             CCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEeCCchHHHHHHHHHh--CCCceEEEECC
Confidence            5678899994 44 4777777766 467999999999999988864322233222111112222232  45799999754


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      .      ...+..+.+.|+ ++|+++....
T Consensus       244 g------~~~~~~~~~~l~-~~G~iv~~g~  266 (353)
T 4dup_A          244 G------AAYFERNIASLA-KDGCLSIIAF  266 (353)
T ss_dssp             C------GGGHHHHHHTEE-EEEEEEECCC
T ss_pred             C------HHHHHHHHHHhc-cCCEEEEEEe
Confidence            3      236788899999 9999987554

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=95.66  E-value=0.025  Score=48.38  Aligned_cols=98  Identities=15%  Similarity=0.116  Sum_probs=64.7

Q ss_pred             CCCCeEEEEcC-C-cchhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           32 TNHELAWDVGT-G-SGQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        32 ~~~~~vlDvGc-G-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      .++++||-.|+ | .|..+..+++. +++|++++.++..++.++++......... ......+... .....+|+|+.+.
T Consensus       158 ~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~-~~~~~~v~~~-~~~~g~Dvvid~~  235 (342)
T 4eye_A          158 RAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLE-EGWAKAVREA-TGGAGVDMVVDPI  235 (342)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEESS-TTHHHHHHHH-TTTSCEEEEEESC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEecCc-hhHHHHHHHH-hCCCCceEEEECC
Confidence            56789999998 4 47888777764 67999999999988888864332233222 1111222222 2334799999754


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      .-      ..+..+.+.|+ ++|++++...
T Consensus       236 g~------~~~~~~~~~l~-~~G~iv~~G~  258 (342)
T 4eye_A          236 GG------PAFDDAVRTLA-SEGRLLVVGF  258 (342)
T ss_dssp             C--------CHHHHHHTEE-EEEEEEEC--
T ss_pred             ch------hHHHHHHHhhc-CCCEEEEEEc
Confidence            32      36788899999 9999987543

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=95.61  E-value=0.062  Score=45.78  Aligned_cols=98  Identities=15%  Similarity=0.118  Sum_probs=64.7

Q ss_pred             CCCCeEEEEcC--CcchhHHHHHh-cCCcEEEEcCCHHHHHHHH-cCCCceEEecC-CccchhhhhhccCCCCceeEEEe
Q 024647           32 TNHELAWDVGT--GSGQAAASLSG-IFENVIGTETSPKQIEFAT-KLPNIRYELTS-PAMSIAELEQNVAAQSTVDLVTI  106 (265)
Q Consensus        32 ~~~~~vlDvGc--G~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~-~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~Dlv~~  106 (265)
                      .++++||-.||  |.|..+..+++ .+++|+++|.++..++.++ ++......... .......+....  .+.+|+|+.
T Consensus       154 ~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~--~~~~d~vi~  231 (345)
T 2j3h_A          154 KEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCF--PNGIDIYFE  231 (345)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHC--TTCEEEEEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEecCCHHHHHHHHHHHh--CCCCcEEEE
Confidence            56789999998  35777777765 5679999999999998887 44322222211 101112223321  257999987


Q ss_pred             ccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          107 AQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       107 ~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      +..      ...++.+.+.|+ ++|++++...
T Consensus       232 ~~g------~~~~~~~~~~l~-~~G~~v~~G~  256 (345)
T 2j3h_A          232 NVG------GKMLDAVLVNMN-MHGRIAVCGM  256 (345)
T ss_dssp             SSC------HHHHHHHHTTEE-EEEEEEECCC
T ss_pred             CCC------HHHHHHHHHHHh-cCCEEEEEcc
Confidence            643      247889999999 9999987543

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=95.55  E-value=0.071  Score=45.90  Aligned_cols=99  Identities=21%  Similarity=0.148  Sum_probs=66.0

Q ss_pred             CCCCCeEEEEc-CC-cchhHHHHHh-cCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647           31 TTNHELAWDVG-TG-SGQAAASLSG-IFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIA  107 (265)
Q Consensus        31 ~~~~~~vlDvG-cG-~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~  107 (265)
                      ..++++||-.| +| .|..+..+++ .+++|++++.+++.++.++++.........-......+...  ..+.+|+|+..
T Consensus       161 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~--~~~g~D~vid~  238 (362)
T 2c0c_A          161 LSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQE--YPEGVDVVYES  238 (362)
T ss_dssp             CCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHH--CTTCEEEEEEC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCCcEEEecCChhHHHHHHHh--cCCCCCEEEEC
Confidence            35678999999 34 4888877776 46789999999998888886532222222111111122222  13469999976


Q ss_pred             cccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      ..      ...++.+.+.|+ ++|++++...
T Consensus       239 ~g------~~~~~~~~~~l~-~~G~iv~~g~  262 (362)
T 2c0c_A          239 VG------GAMFDLAVDALA-TKGRLIVIGF  262 (362)
T ss_dssp             SC------THHHHHHHHHEE-EEEEEEECCC
T ss_pred             CC------HHHHHHHHHHHh-cCCEEEEEeC
Confidence            43      257889999999 9999987554

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.46  E-value=0.044  Score=46.34  Aligned_cols=99  Identities=14%  Similarity=0.101  Sum_probs=63.2

Q ss_pred             CCCCeEEEEcC--CcchhHHHHHh-cCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           32 TNHELAWDVGT--GSGQAAASLSG-IFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        32 ~~~~~vlDvGc--G~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      .++++||-.|+  |.|.....+++ .+++|+++|.++..++.+++..........-......+.+. .....+|+++.+.
T Consensus       139 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~D~vi~~~  217 (327)
T 1qor_A          139 KPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEI-TGGKKVRVVYDSV  217 (327)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHH-TTTCCEEEEEECS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEECCCccHHHHHHHH-hCCCCceEEEECC
Confidence            46788999994  34666666554 57799999999988888775322122221111001112222 1234699998764


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      .      ...++.+.+.|+ ++|+++....
T Consensus       218 g------~~~~~~~~~~l~-~~G~iv~~g~  240 (327)
T 1qor_A          218 G------RDTWERSLDCLQ-RRGLMVSFGN  240 (327)
T ss_dssp             C------GGGHHHHHHTEE-EEEEEEECCC
T ss_pred             c------hHHHHHHHHHhc-CCCEEEEEec
Confidence            3      467889999999 9999987654

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=95.41  E-value=0.01  Score=51.20  Aligned_cols=97  Identities=20%  Similarity=0.153  Sum_probs=64.1

Q ss_pred             CCCCCeEEEEcCCc-chhHHHHHh-cCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchh-hh-hhccCCCCceeEEEe
Q 024647           31 TTNHELAWDVGTGS-GQAAASLSG-IFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIA-EL-EQNVAAQSTVDLVTI  106 (265)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~-d~-~~~~~~~~~~Dlv~~  106 (265)
                      ..++++||-+|+|. |.++..+++ .+++|+++|.++..++.++++.........-    . ++ +.+  . +.+|+|+.
T Consensus       177 ~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~----~~~~~~~~--~-~~~D~vid  249 (360)
T 1piw_A          177 CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLE----EGDWGEKY--F-DTFDLIVV  249 (360)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGG----TSCHHHHS--C-SCEEEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcC----chHHHHHh--h-cCCCEEEE
Confidence            35678999999975 777777776 4678999999999888887643222222110    1 11 222  1 47999996


Q ss_pred             ccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          107 AQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       107 ~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      ...--   ....++.+.++|+ ++|+++....
T Consensus       250 ~~g~~---~~~~~~~~~~~l~-~~G~iv~~g~  277 (360)
T 1piw_A          250 CASSL---TDIDFNIMPKAMK-VGGRIVSISI  277 (360)
T ss_dssp             CCSCS---TTCCTTTGGGGEE-EEEEEEECCC
T ss_pred             CCCCC---cHHHHHHHHHHhc-CCCEEEEecC
Confidence            54320   0245667788999 9999987544

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=95.29  E-value=0.024  Score=48.80  Aligned_cols=94  Identities=18%  Similarity=0.129  Sum_probs=62.5

Q ss_pred             CCCeEEEEcCCc-chhHHHHHh-cCCcEEEEcCCHHHHHHHH-cCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647           33 NHELAWDVGTGS-GQAAASLSG-IFENVIGTETSPKQIEFAT-KLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA  109 (265)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~  109 (265)
                      ++++||-+|+|. |.++..+++ .+++|+++|.+++.++.++ ++.........-   ...+...   .+.+|+|+-...
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~---~~~~~~~---~~g~D~vid~~g  253 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSD---QAKMSEL---ADSLDYVIDTVP  253 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTC---HHHHHHS---TTTEEEEEECCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeecccc---HHHHHHh---cCCCCEEEECCC
Confidence            778999999875 777777776 4678999999998888877 443222222111   0122222   136999986532


Q ss_pred             cccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          110 MHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       110 ~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                           ....++.+.++|+ ++|+++....
T Consensus       254 -----~~~~~~~~~~~l~-~~G~iv~~G~  276 (357)
T 2cf5_A          254 -----VHHALEPYLSLLK-LDGKLILMGV  276 (357)
T ss_dssp             -----SCCCSHHHHTTEE-EEEEEEECSC
T ss_pred             -----ChHHHHHHHHHhc-cCCEEEEeCC
Confidence                 1235677889999 9999987554

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=95.23  E-value=0.015  Score=48.97  Aligned_cols=87  Identities=20%  Similarity=-0.004  Sum_probs=59.6

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA  109 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~  109 (265)
                      .++++||-+|+|. |.++..+++. +++|++++ ++..++.++++. ..... +      |.+.+   .+.+|+|+-...
T Consensus       141 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~lG-a~~v~-~------d~~~v---~~g~Dvv~d~~g  208 (315)
T 3goh_A          141 TKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKRG-VRHLY-R------EPSQV---TQKYFAIFDAVN  208 (315)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHHT-EEEEE-S------SGGGC---CSCEEEEECC--
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHcC-CCEEE-c------CHHHh---CCCccEEEECCC
Confidence            5678999999975 8888888764 67999999 998888888743 22222 1      12333   567999986432


Q ss_pred             cccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647          110 MHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       110 ~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      -      ..+..+.+.|+ ++|+++...
T Consensus       209 ~------~~~~~~~~~l~-~~G~~v~~g  229 (315)
T 3goh_A          209 S------QNAAALVPSLK-ANGHIICIQ  229 (315)
T ss_dssp             -----------TTGGGEE-EEEEEEEEC
T ss_pred             c------hhHHHHHHHhc-CCCEEEEEe
Confidence            1      22366789999 999998764

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=95.19  E-value=0.066  Score=45.89  Aligned_cols=99  Identities=15%  Similarity=0.041  Sum_probs=62.7

Q ss_pred             CCCCeEEEEcC--CcchhHHHHHh-cCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           32 TNHELAWDVGT--GSGQAAASLSG-IFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        32 ~~~~~vlDvGc--G~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      .++++||-.|+  |.|..+..+++ .+++|+++|.+++.++.++++................+.+. .....+|+++.+.
T Consensus       161 ~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~d~vi~~~  239 (354)
T 2j8z_A          161 QAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAAAGFNYKKEDFSEATLKF-TKGAGVNLILDCI  239 (354)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHH-TTTSCEEEEEESS
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEecCChHHHHHHHHH-hcCCCceEEEECC
Confidence            56788999984  34666666654 56799999999998888865422222221111011122222 1334699998764


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      .-      ..+..+.++|+ ++|++++...
T Consensus       240 G~------~~~~~~~~~l~-~~G~iv~~G~  262 (354)
T 2j8z_A          240 GG------SYWEKNVNCLA-LDGRWVLYGL  262 (354)
T ss_dssp             CG------GGHHHHHHHEE-EEEEEEECCC
T ss_pred             Cc------hHHHHHHHhcc-CCCEEEEEec
Confidence            31      35778899999 9999987654

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=95.03  E-value=0.18  Score=43.49  Aligned_cols=97  Identities=7%  Similarity=-0.038  Sum_probs=64.5

Q ss_pred             CCCCeEEEEcC-C-cchhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           32 TNHELAWDVGT-G-SGQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        32 ~~~~~vlDvGc-G-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      .++++||-+|+ | .|.++..+++. +++|+++. ++.-++.++++.....+..........+.++  .++.+|+|+-. 
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~--t~g~~d~v~d~-  238 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLAKSRGAEEVFDYRAPNLAQTIRTY--TKNNLRYALDC-  238 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTTCSEEEETTSTTHHHHHHHH--TTTCCCEEEES-
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHHHHcCCcEEEECCCchHHHHHHHH--ccCCccEEEEC-
Confidence            56788999999 3 58888888875 56888885 8888888887643333332221111222222  22359999965 


Q ss_pred             ccccCChhHHHHHHHHHh-cCCCcEEEEEe
Q 024647          109 AMHWFDLPQFYNQVKWVL-KKPNGVIATWC  137 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~L-k~pgG~l~~~~  137 (265)
                          ..-...++.+.+.| + ++|+++...
T Consensus       239 ----~g~~~~~~~~~~~l~~-~~G~iv~~g  263 (371)
T 3gqv_A          239 ----ITNVESTTFCFAAIGR-AGGHYVSLN  263 (371)
T ss_dssp             ----SCSHHHHHHHHHHSCT-TCEEEEESS
T ss_pred             ----CCchHHHHHHHHHhhc-CCCEEEEEe
Confidence                23346788889999 7 899998754

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=94.91  E-value=0.094  Score=46.63  Aligned_cols=100  Identities=15%  Similarity=0.132  Sum_probs=65.7

Q ss_pred             CCCCCeEEEEcC-Cc-chhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccc-----------------hhh
Q 024647           31 TTNHELAWDVGT-GS-GQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMS-----------------IAE   90 (265)
Q Consensus        31 ~~~~~~vlDvGc-G~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-----------------~~d   90 (265)
                      ..++++||-+|+ |. |.++..+++. ++++++++.++.-++.++++.....+.......                 ...
T Consensus       226 ~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~lGa~~vi~~~~~d~~~~~~~~~~~~~~~~~~~~~  305 (456)
T 3krt_A          226 MKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKR  305 (456)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCCEEEETTTTTCCSEEETTEECHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCcEEEecCcCcccccccccccchHHHHHHHHH
Confidence            356789999998 54 8888888764 678999999999999888643222222111000                 011


Q ss_pred             hhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647           91 LEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        91 ~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      +.++ .....+|+|+-...      ...+..+.++|+ ++|++++...
T Consensus       306 i~~~-t~g~g~Dvvid~~G------~~~~~~~~~~l~-~~G~iv~~G~  345 (456)
T 3krt_A          306 IREL-TGGEDIDIVFEHPG------RETFGASVFVTR-KGGTITTCAS  345 (456)
T ss_dssp             HHHH-HTSCCEEEEEECSC------HHHHHHHHHHEE-EEEEEEESCC
T ss_pred             HHHH-hCCCCCcEEEEcCC------chhHHHHHHHhh-CCcEEEEEec
Confidence            1122 13357999986532      257889999999 9999987543

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=94.91  E-value=0.098  Score=44.61  Aligned_cols=96  Identities=15%  Similarity=0.070  Sum_probs=63.9

Q ss_pred             CCCCeEEEEcC-C-cchhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           32 TNHELAWDVGT-G-SGQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        32 ~~~~~vlDvGc-G-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      .++++||-+|+ | .|..+..+++. +++|+++ .++..++.++++. ...+. ........+... .....+|+|+-..
T Consensus       149 ~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~lG-a~~i~-~~~~~~~~~~~~-~~~~g~D~vid~~  224 (343)
T 3gaz_A          149 QDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDLG-ATPID-ASREPEDYAAEH-TAGQGFDLVYDTL  224 (343)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHHT-SEEEE-TTSCHHHHHHHH-HTTSCEEEEEESS
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHcC-CCEec-cCCCHHHHHHHH-hcCCCceEEEECC
Confidence            56789999994 4 38888887764 6799999 8888888887642 22232 221111222222 2345799998753


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      .      ...+..+.+.|+ ++|.++....
T Consensus       225 g------~~~~~~~~~~l~-~~G~iv~~g~  247 (343)
T 3gaz_A          225 G------GPVLDASFSAVK-RFGHVVSCLG  247 (343)
T ss_dssp             C------THHHHHHHHHEE-EEEEEEESCC
T ss_pred             C------cHHHHHHHHHHh-cCCeEEEEcc
Confidence            3      257889999999 9999987543

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=94.88  E-value=0.047  Score=47.07  Aligned_cols=94  Identities=17%  Similarity=0.103  Sum_probs=62.0

Q ss_pred             CCCeEEEEcCCc-chhHHHHHhc-CCcEEEEcCCHHHHHHHH-cCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647           33 NHELAWDVGTGS-GQAAASLSGI-FENVIGTETSPKQIEFAT-KLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA  109 (265)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~  109 (265)
                      ++++||-+|+|. |..+..+++. +++|++++.++..++.++ ++.........-   ...+....   +.+|+|+....
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~---~~~~~~~~---~~~D~vid~~g  260 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRD---QEQMQAAA---GTLDGIIDTVS  260 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTC---HHHHHHTT---TCEEEEEECCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccC---HHHHHHhh---CCCCEEEECCC
Confidence            678899999875 7777777764 578999999999888776 443222222111   01233331   36999986532


Q ss_pred             cccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          110 MHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       110 ~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      .     ...++.+.+.|+ ++|+++....
T Consensus       261 ~-----~~~~~~~~~~l~-~~G~iv~~g~  283 (366)
T 1yqd_A          261 A-----VHPLLPLFGLLK-SHGKLILVGA  283 (366)
T ss_dssp             S-----CCCSHHHHHHEE-EEEEEEECCC
T ss_pred             c-----HHHHHHHHHHHh-cCCEEEEEcc
Confidence            1     234567788999 9999987554

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=94.81  E-value=0.077  Score=44.98  Aligned_cols=99  Identities=18%  Similarity=0.124  Sum_probs=62.8

Q ss_pred             CCCCeEEEEcC--CcchhHHHHHh-cCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           32 TNHELAWDVGT--GSGQAAASLSG-IFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        32 ~~~~~vlDvGc--G~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      .++++||-.|+  |.|..+..+++ .+++|+++|.+++.++.++++................+.+.. ....+|+++.+.
T Consensus       144 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~i~~~~-~~~~~d~vi~~~  222 (333)
T 1wly_A          144 KPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKLGCHHTINYSTQDFAEVVREIT-GGKGVDVVYDSI  222 (333)
T ss_dssp             CTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHH-TTCCEEEEEECS
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEECCCHHHHHHHHHHh-CCCCCeEEEECC
Confidence            56788999995  45776666654 567999999999888877653221222211110011122221 234699999754


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      .-      ..++.+.+.|+ ++|+++....
T Consensus       223 g~------~~~~~~~~~l~-~~G~iv~~g~  245 (333)
T 1wly_A          223 GK------DTLQKSLDCLR-PRGMCAAYGH  245 (333)
T ss_dssp             CT------TTHHHHHHTEE-EEEEEEECCC
T ss_pred             cH------HHHHHHHHhhc-cCCEEEEEec
Confidence            31      56888999999 9999987654

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=94.79  E-value=0.037  Score=48.66  Aligned_cols=42  Identities=21%  Similarity=0.188  Sum_probs=35.8

Q ss_pred             CCCCeEEEEcCCcchhHHHHH-hcC---CcEEEEcCCHHHHHHHHc
Q 024647           32 TNHELAWDVGTGSGQAAASLS-GIF---ENVIGTETSPKQIEFATK   73 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~-~~~---~~v~~vD~s~~~~~~a~~   73 (265)
                      +++.+++||||+.|..+..++ +.+   .+|+++|++|...+..++
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~  270 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQN  270 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHH
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH
Confidence            467899999999999999987 444   479999999999887764

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=94.75  E-value=0.071  Score=44.97  Aligned_cols=90  Identities=13%  Similarity=0.039  Sum_probs=61.9

Q ss_pred             eEEEEcC-C-cchhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhc-cCCCCceeEEEeccccc
Q 024647           36 LAWDVGT-G-SGQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQN-VAAQSTVDLVTIAQAMH  111 (265)
Q Consensus        36 ~vlDvGc-G-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~Dlv~~~~~~~  111 (265)
                      .||-.|+ | .|.++..+++. +++|++++.+++.++.++++..-.....      .+.... ....+.+|+|+-...  
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~------~~~~~~~~~~~~~~d~v~d~~g--  220 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGANRILSR------DEFAESRPLEKQLWAGAIDTVG--  220 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTCSEEEEG------GGSSCCCSSCCCCEEEEEESSC--
T ss_pred             eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEec------CCHHHHHhhcCCCccEEEECCC--
Confidence            4999997 4 48888888864 6799999999999998887532222221      111111 123457999886432  


Q ss_pred             cCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          112 WFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       112 ~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                          ...++.+.+.|+ ++|+++....
T Consensus       221 ----~~~~~~~~~~l~-~~G~iv~~G~  242 (324)
T 3nx4_A          221 ----DKVLAKVLAQMN-YGGCVAACGL  242 (324)
T ss_dssp             ----HHHHHHHHHTEE-EEEEEEECCC
T ss_pred             ----cHHHHHHHHHHh-cCCEEEEEec
Confidence                238899999999 9999987654

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=94.66  E-value=0.087  Score=44.82  Aligned_cols=68  Identities=13%  Similarity=-0.026  Sum_probs=48.7

Q ss_pred             CCeEEEEcCCcchhHHHHHhcCCc-EEEEcCCHHHHHHHHcC-CCceEEecCCccchhhhhhccC-CCCceeEEEecccc
Q 024647           34 HELAWDVGTGSGQAAASLSGIFEN-VIGTETSPKQIEFATKL-PNIRYELTSPAMSIAELEQNVA-AQSTVDLVTIAQAM  110 (265)
Q Consensus        34 ~~~vlDvGcG~G~~~~~l~~~~~~-v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~d~~~~~~-~~~~~Dlv~~~~~~  110 (265)
                      ..+++|+.||.|.++..+.+.+.+ +.++|+++..++..+.. ++..  .       +|+.++.. .-..+|+|+....+
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~~--~-------~Di~~~~~~~~~~~D~l~~gpPC   81 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKP--E-------GDITQVNEKTIPDHDILCAGFPC   81 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCCC--B-------SCGGGSCGGGSCCCSEEEEECCC
T ss_pred             CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCCC--c-------CCHHHcCHhhCCCCCEEEECCCC
Confidence            368999999999999999998875 78999999998877642 3222  2       44444321 11258999987644

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=94.63  E-value=0.17  Score=43.30  Aligned_cols=99  Identities=14%  Similarity=0.033  Sum_probs=63.2

Q ss_pred             CCCC--CeEEEEcC--CcchhHHHHHh-cCC-cEEEEcCCHHHHHHHHc-CCCceEEecCCccchhhhhhccCCCCceeE
Q 024647           31 TTNH--ELAWDVGT--GSGQAAASLSG-IFE-NVIGTETSPKQIEFATK-LPNIRYELTSPAMSIAELEQNVAAQSTVDL  103 (265)
Q Consensus        31 ~~~~--~~vlDvGc--G~G~~~~~l~~-~~~-~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dl  103 (265)
                      ..++  ++||-.|+  |.|..+..+++ .++ +|+++|.++..++.+++ +.........-......+... .. +.+|+
T Consensus       156 ~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~-~~-~~~d~  233 (357)
T 2zb4_A          156 ITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKKDNVAEQLRES-CP-AGVDV  233 (357)
T ss_dssp             CCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCSEEEETTTSCHHHHHHHH-CT-TCEEE
T ss_pred             CCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCceEEecCchHHHHHHHHh-cC-CCCCE
Confidence            3567  89999998  34666666655 567 89999999988887765 422222221111011112222 12 27999


Q ss_pred             EEeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          104 VTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       104 v~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      ++.+..      ...++.+.++|+ ++|++++...
T Consensus       234 vi~~~G------~~~~~~~~~~l~-~~G~iv~~G~  261 (357)
T 2zb4_A          234 YFDNVG------GNISDTVISQMN-ENSHIILCGQ  261 (357)
T ss_dssp             EEESCC------HHHHHHHHHTEE-EEEEEEECCC
T ss_pred             EEECCC------HHHHHHHHHHhc-cCcEEEEECC
Confidence            997644      267889999999 9999987543

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=94.28  E-value=0.041  Score=46.29  Aligned_cols=41  Identities=12%  Similarity=0.101  Sum_probs=29.2

Q ss_pred             CCCceeEEEeccccccCCh----hHHHHHHHHHhcCCCcEEEEEec
Q 024647           97 AQSTVDLVTIAQAMHWFDL----PQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        97 ~~~~~Dlv~~~~~~~~~~~----~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      ++..+|+|+...--.-.+|    +.+++.++++++ |||+|+.++-
T Consensus       183 ~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~-pgg~laTYta  227 (308)
T 3vyw_A          183 ENFKADAVFHDAFSPYKNPELWTLDFLSLIKERID-EKGYWVSYSS  227 (308)
T ss_dssp             CSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEE-EEEEEEESCC
T ss_pred             cccceeEEEeCCCCcccCcccCCHHHHHHHHHHhC-CCcEEEEEeC
Confidence            4457999997542221233    479999999999 9999986544

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=94.11  E-value=0.45  Score=34.68  Aligned_cols=95  Identities=15%  Similarity=0.055  Sum_probs=59.6

Q ss_pred             CCeEEEEcCCc-c-hhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccccc
Q 024647           34 HELAWDVGTGS-G-QAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMH  111 (265)
Q Consensus        34 ~~~vlDvGcG~-G-~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~  111 (265)
                      .++|+=+|||. | .++..|.+.+.+|+++|.+++.++.++. .++....+++... ..++..  .-..+|+|++...  
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~-~g~~~i~gd~~~~-~~l~~a--~i~~ad~vi~~~~--   80 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRE-RGVRAVLGNAANE-EIMQLA--HLECAKWLILTIP--   80 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH-TTCEEEESCTTSH-HHHHHT--TGGGCSEEEECCS--
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-cCCCEEECCCCCH-HHHHhc--CcccCCEEEEECC--
Confidence            36799999986 4 3344455667899999999999998876 4677777554211 112222  2346898887532  


Q ss_pred             cCChh--HHHHHHHHHhcCCCcEEEEEe
Q 024647          112 WFDLP--QFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       112 ~~~~~--~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                        +..  ..+-...+.+. |+..++.-.
T Consensus        81 --~~~~n~~~~~~a~~~~-~~~~iiar~  105 (140)
T 3fwz_A           81 --NGYEAGEIVASARAKN-PDIEIIARA  105 (140)
T ss_dssp             --CHHHHHHHHHHHHHHC-SSSEEEEEE
T ss_pred             --ChHHHHHHHHHHHHHC-CCCeEEEEE
Confidence              222  23344567777 788766544

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=94.09  E-value=0.12  Score=44.50  Aligned_cols=96  Identities=14%  Similarity=0.027  Sum_probs=60.5

Q ss_pred             CCCCCeEEEEc-CCc-chhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhh-hhccCCCCceeEEEe
Q 024647           31 TTNHELAWDVG-TGS-GQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAEL-EQNVAAQSTVDLVTI  106 (265)
Q Consensus        31 ~~~~~~vlDvG-cG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~Dlv~~  106 (265)
                      ..++++||-.| +|. |..+..+++. +++|++++ ++.-++.++++.........-    .++ +.+. ....+|+|+.
T Consensus       181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~~~lGa~~v~~~~~----~~~~~~~~-~~~g~D~vid  254 (375)
T 2vn8_A          181 NCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELVRKLGADDVIDYKS----GSVEEQLK-SLKPFDFILD  254 (375)
T ss_dssp             TCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTTCSEEEETTS----SCHHHHHH-TSCCBSEEEE
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHHHHcCCCEEEECCc----hHHHHHHh-hcCCCCEEEE
Confidence            34678999999 564 8888887764 57899998 677778777653222222111    111 1121 1246999986


Q ss_pred             ccccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647          107 AQAMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       107 ~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      ...    .....+..+.+.|+ ++|+++...
T Consensus       255 ~~g----~~~~~~~~~~~~l~-~~G~iv~~g  280 (375)
T 2vn8_A          255 NVG----GSTETWAPDFLKKW-SGATYVTLV  280 (375)
T ss_dssp             SSC----TTHHHHGGGGBCSS-SCCEEEESC
T ss_pred             CCC----ChhhhhHHHHHhhc-CCcEEEEeC
Confidence            532    22245677788899 999998754

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=94.07  E-value=0.094  Score=45.12  Aligned_cols=93  Identities=18%  Similarity=0.123  Sum_probs=60.5

Q ss_pred             CCeEEEEcCCc-chhHHHHHh-cCCcEEEEcCCH---HHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           34 HELAWDVGTGS-GQAAASLSG-IFENVIGTETSP---KQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        34 ~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~---~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      +++||-+|+|. |..+..+++ .+++|+++|.++   +.++.++++. ....... .+. ..+.+.  . +.+|+|+...
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~g-a~~v~~~-~~~-~~~~~~--~-~~~d~vid~~  254 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETK-TNYYNSS-NGY-DKLKDS--V-GKFDVIIDAT  254 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHT-CEEEECT-TCS-HHHHHH--H-CCEEEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhC-CceechH-HHH-HHHHHh--C-CCCCEEEECC
Confidence            78999999954 666666655 467999999998   7777776532 2222111 111 222221  2 5699998764


Q ss_pred             ccccCChhHHH-HHHHHHhcCCCcEEEEEec
Q 024647          109 AMHWFDLPQFY-NQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       109 ~~~~~~~~~~l-~~~~~~Lk~pgG~l~~~~~  138 (265)
                      .     ....+ +.+.+.|+ ++|+++....
T Consensus       255 g-----~~~~~~~~~~~~l~-~~G~iv~~g~  279 (366)
T 2cdc_A          255 G-----ADVNILGNVIPLLG-RNGVLGLFGF  279 (366)
T ss_dssp             C-----CCTHHHHHHGGGEE-EEEEEEECSC
T ss_pred             C-----ChHHHHHHHHHHHh-cCCEEEEEec
Confidence            3     23466 88999999 9999987654

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=93.95  E-value=0.2  Score=44.33  Aligned_cols=99  Identities=11%  Similarity=0.017  Sum_probs=64.3

Q ss_pred             CCCCCeEEEEcC-Cc-chhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCC-cc-----------------chh
Q 024647           31 TTNHELAWDVGT-GS-GQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSP-AM-----------------SIA   89 (265)
Q Consensus        31 ~~~~~~vlDvGc-G~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~-~~-----------------~~~   89 (265)
                      ..++++||-.|+ |. |..+..+++. ++++++++.++.-++.++++.........- .+                 ...
T Consensus       218 ~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (447)
T 4a0s_A          218 MKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGCDLVINRAELGITDDIADDPRRVVETGRKLAK  297 (447)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCCEEEHHHHTCCTTGGGCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEecccccccccccccccccchhhhHHHH
Confidence            356789999998 43 7777777764 678999999999999888753222222100 00                 001


Q ss_pred             hhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647           90 ELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        90 d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      .+....  ...+|+|+.+..      ...++.+.+.|+ ++|+++....
T Consensus       298 ~v~~~~--g~g~Dvvid~~G------~~~~~~~~~~l~-~~G~iv~~G~  337 (447)
T 4a0s_A          298 LVVEKA--GREPDIVFEHTG------RVTFGLSVIVAR-RGGTVVTCGS  337 (447)
T ss_dssp             HHHHHH--SSCCSEEEECSC------HHHHHHHHHHSC-TTCEEEESCC
T ss_pred             HHHHHh--CCCceEEEECCC------chHHHHHHHHHh-cCCEEEEEec
Confidence            111121  346999987533      246788899999 9999987553

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=93.93  E-value=0.12  Score=44.07  Aligned_cols=96  Identities=9%  Similarity=-0.066  Sum_probs=57.7

Q ss_pred             CeEEEE-cCCc-chhHHHHHh-cCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccccc
Q 024647           35 ELAWDV-GTGS-GQAAASLSG-IFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMH  111 (265)
Q Consensus        35 ~~vlDv-GcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~  111 (265)
                      .+||-. |+|. |..+..+++ .+++|+++|.++.-++.++++................+.+.. ....+|+|+-...  
T Consensus       166 ~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~-~~~g~D~vid~~g--  242 (349)
T 3pi7_A          166 KAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDIGAAHVLNEKAPDFEATLREVM-KAEQPRIFLDAVT--  242 (349)
T ss_dssp             SEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHTCSEEEETTSTTHHHHHHHHH-HHHCCCEEEESSC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEECCcHHHHHHHHHHh-cCCCCcEEEECCC--
Confidence            455543 5553 666666665 467999999999988888764322233322111111122111 1236999986533  


Q ss_pred             cCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          112 WFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       112 ~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                          ...+..+.+.|+ ++|+++....
T Consensus       243 ----~~~~~~~~~~l~-~~G~iv~~G~  264 (349)
T 3pi7_A          243 ----GPLASAIFNAMP-KRARWIIYGR  264 (349)
T ss_dssp             ----HHHHHHHHHHSC-TTCEEEECCC
T ss_pred             ----ChhHHHHHhhhc-CCCEEEEEec
Confidence                234578889999 9999988653

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=93.89  E-value=0.069  Score=45.58  Aligned_cols=89  Identities=10%  Similarity=0.042  Sum_probs=58.1

Q ss_pred             CeEEEEcCCcchhHHHHHhcCC--c-EEEEcCCHHHHHHHHc-CCCceEEecCCccchhhhhhccCCCCceeEEEecccc
Q 024647           35 ELAWDVGTGSGQAAASLSGIFE--N-VIGTETSPKQIEFATK-LPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAM  110 (265)
Q Consensus        35 ~~vlDvGcG~G~~~~~l~~~~~--~-v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~  110 (265)
                      .+++|+-||.|.++..+.+.+.  + |.++|+++..++.-+. .++......++.-.  +.+++  +...+|+++.....
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~~~~~~~DI~~~--~~~~~--~~~~~D~l~ggpPC   79 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPETNLLNRNIQQL--TPQVI--KKWNVDTILMSPPC   79 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECCCGGGC--CHHHH--HHTTCCEEEECCCC
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCCCceeccccccC--CHHHh--ccCCCCEEEecCCC
Confidence            4799999999999999998874  3 7899999999886654 45555555443211  11112  22368999986643


Q ss_pred             ccC----------Ch-hHHHHHHHHHhc
Q 024647          111 HWF----------DL-PQFYNQVKWVLK  127 (265)
Q Consensus       111 ~~~----------~~-~~~l~~~~~~Lk  127 (265)
                      .-+          |. ..++.++.++++
T Consensus        80 Q~fS~ag~~~~~~d~r~~L~~~~~r~i~  107 (333)
T 4h0n_A           80 QPFTRNGKYLDDNDPRTNSFLYLIGILD  107 (333)
T ss_dssp             CCSEETTEECCTTCTTSCCHHHHHHHGG
T ss_pred             cchhhhhhccCCcCcccccHHHHHHHHH
Confidence            322          21 235666777765

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=93.80  E-value=0.059  Score=45.03  Aligned_cols=93  Identities=15%  Similarity=0.084  Sum_probs=62.0

Q ss_pred             CCCCCeEEEEcC-C-cchhHHHHHh-cCCcEEEEcCCHHHHHHHHcCCCceEEecCCccch-hhhhhccCCCCceeEEEe
Q 024647           31 TTNHELAWDVGT-G-SGQAAASLSG-IFENVIGTETSPKQIEFATKLPNIRYELTSPAMSI-AELEQNVAAQSTVDLVTI  106 (265)
Q Consensus        31 ~~~~~~vlDvGc-G-~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~Dlv~~  106 (265)
                      ..++++||-+|+ | .|..+..+++ .+++|+++|.++..++.++++.........    . .++.+. .  +.+|+|+.
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~----~~~~~~~~-~--~~~d~vid  195 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYA----EVPERAKA-W--GGLDLVLE  195 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGG----GHHHHHHH-T--TSEEEEEE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECC----cchhHHHH-h--cCceEEEE
Confidence            457789999998 3 4777777775 467999999999988888764322222210    0 122111 1  56999987


Q ss_pred             ccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          107 AQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       107 ~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                       ..-      ..++.+.+.|+ ++|+++....
T Consensus       196 -~g~------~~~~~~~~~l~-~~G~~v~~g~  219 (302)
T 1iz0_A          196 -VRG------KEVEESLGLLA-HGGRLVYIGA  219 (302)
T ss_dssp             -CSC------TTHHHHHTTEE-EEEEEEEC--
T ss_pred             -CCH------HHHHHHHHhhc-cCCEEEEEeC
Confidence             431      46788899999 9999987543

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=93.73  E-value=0.17  Score=42.57  Aligned_cols=92  Identities=21%  Similarity=0.086  Sum_probs=59.8

Q ss_pred             CCCCCeEEEEc-CCc-chhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhh-hhhccCCCCceeEEEe
Q 024647           31 TTNHELAWDVG-TGS-GQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAE-LEQNVAAQSTVDLVTI  106 (265)
Q Consensus        31 ~~~~~~vlDvG-cG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~Dlv~~  106 (265)
                      ..++++||-+| +|. |.++..+++. +++|++++ ++.-++.++++.........-    .+ +.+.   -..+|+|+-
T Consensus       150 ~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~-~~~~~~~~~~lGa~~~i~~~~----~~~~~~~---~~g~D~v~d  221 (321)
T 3tqh_A          150 VKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA-SKRNHAFLKALGAEQCINYHE----EDFLLAI---STPVDAVID  221 (321)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE-CHHHHHHHHHHTCSEEEETTT----SCHHHHC---CSCEEEEEE
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe-ccchHHHHHHcCCCEEEeCCC----cchhhhh---ccCCCEEEE
Confidence            35778999996 665 8888888864 67899887 455577777643222333211    11 2221   146999986


Q ss_pred             ccccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647          107 AQAMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       107 ~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      ...     .. .+..+.+.|+ ++|+++...
T Consensus       222 ~~g-----~~-~~~~~~~~l~-~~G~iv~~g  245 (321)
T 3tqh_A          222 LVG-----GD-VGIQSIDCLK-ETGCIVSVP  245 (321)
T ss_dssp             SSC-----HH-HHHHHGGGEE-EEEEEEECC
T ss_pred             CCC-----cH-HHHHHHHhcc-CCCEEEEeC
Confidence            532     23 3488999999 999998753

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=93.38  E-value=0.21  Score=37.15  Aligned_cols=99  Identities=12%  Similarity=-0.012  Sum_probs=53.9

Q ss_pred             CCCCeEEEEcCCc-chh-HHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhcc-CCCCceeEEEecc
Q 024647           32 TNHELAWDVGTGS-GQA-AASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNV-AAQSTVDLVTIAQ  108 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~-~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~Dlv~~~~  108 (265)
                      .+.++|+-+|||. |.. +..|.+.+.+|+++|.++..++.++...+......+.    .+.+.+. ..-..+|+|+...
T Consensus        17 ~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~----~~~~~l~~~~~~~ad~Vi~~~   92 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDA----AEFETLKECGMEKADMVFAFT   92 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCT----TSHHHHHTTTGGGCSEEEECS
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecC----CCHHHHHHcCcccCCEEEEEe
Confidence            4567899999975 433 3344556778999999998776665223455555443    1111121 1124689998763


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      .-.  .....+..+.+.+. |...++...
T Consensus        93 ~~~--~~~~~~~~~~~~~~-~~~~iv~~~  118 (155)
T 2g1u_A           93 NDD--STNFFISMNARYMF-NVENVIARV  118 (155)
T ss_dssp             SCH--HHHHHHHHHHHHTS-CCSEEEEEC
T ss_pred             CCc--HHHHHHHHHHHHHC-CCCeEEEEE
Confidence            211  11123334444445 455555433

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=93.34  E-value=0.2  Score=42.22  Aligned_cols=97  Identities=11%  Similarity=0.033  Sum_probs=61.2

Q ss_pred             CCCC-eEEEEcC-C-cchhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647           32 TNHE-LAWDVGT-G-SGQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIA  107 (265)
Q Consensus        32 ~~~~-~vlDvGc-G-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~  107 (265)
                      .++. +||-+|+ | .|..+..+++. +++|++++.+++-++.++++.........- ........+  ..+.+|+|+-.
T Consensus       147 ~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~-~~~~~~~~~--~~~~~d~vid~  223 (328)
T 1xa0_A          147 TPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLARED-VMAERIRPL--DKQRWAAAVDP  223 (328)
T ss_dssp             CGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC----------C--CSCCEEEEEEC
T ss_pred             CCCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcEEEecCC-cHHHHHHHh--cCCcccEEEEC
Confidence            4443 7999998 4 48888887764 678999999988888887653222222110 000011112  23469999865


Q ss_pred             cccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      ..    .  ..+..+.+.|+ ++|++++...
T Consensus       224 ~g----~--~~~~~~~~~l~-~~G~~v~~G~  247 (328)
T 1xa0_A          224 VG----G--RTLATVLSRMR-YGGAVAVSGL  247 (328)
T ss_dssp             ST----T--TTHHHHHHTEE-EEEEEEECSC
T ss_pred             Cc----H--HHHHHHHHhhc-cCCEEEEEee
Confidence            32    1  36788899999 9999987544

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=93.23  E-value=0.31  Score=41.08  Aligned_cols=94  Identities=10%  Similarity=0.040  Sum_probs=61.7

Q ss_pred             CCCC-eEEEEcC-C-cchhHHHHHh-cCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhh--hhc-cCCCCceeEE
Q 024647           32 TNHE-LAWDVGT-G-SGQAAASLSG-IFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAEL--EQN-VAAQSTVDLV  104 (265)
Q Consensus        32 ~~~~-~vlDvGc-G-~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~--~~~-~~~~~~~Dlv  104 (265)
                      .+++ +||-.|| | .|..+..+++ .+++|++++.+++-++.++++........      .+.  +.. ....+.+|+|
T Consensus       148 ~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~~v~~~------~~~~~~~~~~~~~~~~d~v  221 (330)
T 1tt7_A          148 SPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISR------EDVYDGTLKALSKQQWQGA  221 (330)
T ss_dssp             CGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEEEH------HHHCSSCCCSSCCCCEEEE
T ss_pred             CCCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEEEC------CCchHHHHHHhhcCCccEE
Confidence            4443 7999998 4 4777777776 46789999999888888776432222221      111  111 1123469999


Q ss_pred             EeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          105 TIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       105 ~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      +....     . ..+..+.+.|+ ++|++++...
T Consensus       222 id~~g-----~-~~~~~~~~~l~-~~G~iv~~G~  248 (330)
T 1tt7_A          222 VDPVG-----G-KQLASLLSKIQ-YGGSVAVSGL  248 (330)
T ss_dssp             EESCC-----T-HHHHHHHTTEE-EEEEEEECCC
T ss_pred             EECCc-----H-HHHHHHHHhhc-CCCEEEEEec
Confidence            86532     1 47889999999 9999987654

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=93.03  E-value=0.18  Score=42.55  Aligned_cols=69  Identities=6%  Similarity=-0.069  Sum_probs=48.8

Q ss_pred             CeEEEEcCCcchhHHHHHhcCCc-EEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccC-CCCceeEEEecccc
Q 024647           35 ELAWDVGTGSGQAAASLSGIFEN-VIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVA-AQSTVDLVTIAQAM  110 (265)
Q Consensus        35 ~~vlDvGcG~G~~~~~l~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~Dlv~~~~~~  110 (265)
                      ++|||+=||.|.++..+.+.+.+ +.++|+++..++.-+..-......       +|+.++.. .-..+|+++....+
T Consensus         1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~~~~~~-------~DI~~i~~~~~~~~D~l~ggpPC   71 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHSAKLIK-------GDISKISSDEFPKCDGIIGGPPS   71 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCCSEEEE-------SCGGGCCGGGSCCCSEEECCCCG
T ss_pred             CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCCCCccc-------CChhhCCHhhCCcccEEEecCCC
Confidence            46999999999999999988776 679999999988765422234555       44444321 11358999987644

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=92.96  E-value=0.17  Score=42.36  Aligned_cols=74  Identities=11%  Similarity=-0.022  Sum_probs=50.6

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCCc---EEEEcCCHHHHHHHHc-CCCceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFEN---VIGTETSPKQIEFATK-LPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIA  107 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~  107 (265)
                      ....+++|+-||.|.++..+.+.+.+   |.++|+++..++..+. .++......++.-+..  ++++ ..+.+|+++..
T Consensus        14 ~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~~~~~~~~DI~~i~~--~~i~-~~~~~Dll~gg   90 (295)
T 2qrv_A           14 RKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRSVTQ--KHIQ-EWGPFDLVIGG   90 (295)
T ss_dssp             CCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTTTCEEEECCGGGCCH--HHHH-HTCCCSEEEEC
T ss_pred             CCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCCCCceeCCChHHccH--HHhc-ccCCcCEEEec
Confidence            34568999999999999999988765   4899999998886543 4555566644421111  1121 11469999987


Q ss_pred             c
Q 024647          108 Q  108 (265)
Q Consensus       108 ~  108 (265)
                      .
T Consensus        91 p   91 (295)
T 2qrv_A           91 S   91 (295)
T ss_dssp             C
T ss_pred             C
Confidence            6

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=92.91  E-value=0.38  Score=41.16  Aligned_cols=98  Identities=14%  Similarity=0.109  Sum_probs=62.3

Q ss_pred             CCCCCeEEEEcCCc-chhHHHHHh-c-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647           31 TTNHELAWDVGTGS-GQAAASLSG-I-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIA  107 (265)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~  107 (265)
                      ..++++||-+|+|. |.++..+++ . +++|+++|.+++-++.++++.........-. ....+..+. ....+|+|+-.
T Consensus       184 ~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~-~~~~v~~~~-~g~g~Dvvid~  261 (359)
T 1h2b_A          184 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRD-PVKQVMELT-RGRGVNVAMDF  261 (359)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSC-HHHHHHHHT-TTCCEEEEEES
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCEEEeccch-HHHHHHHHh-CCCCCcEEEEC
Confidence            45778999999975 677777776 4 6789999999999998887543333332211 112233332 23379999965


Q ss_pred             cccccCChhH--HHHHHHHHhcCCCcEEEEEec
Q 024647          108 QAMHWFDLPQ--FYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       108 ~~~~~~~~~~--~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      -.     ...  .+..+.++ +  +|+++....
T Consensus       262 ~G-----~~~~~~~~~~~~~-~--~G~~v~~g~  286 (359)
T 1h2b_A          262 VG-----SQATVDYTPYLLG-R--MGRLIIVGY  286 (359)
T ss_dssp             SC-----CHHHHHHGGGGEE-E--EEEEEECCC
T ss_pred             CC-----CchHHHHHHHhhc-C--CCEEEEEeC
Confidence            32     233  56666665 4  898887554

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=92.86  E-value=0.063  Score=45.72  Aligned_cols=87  Identities=10%  Similarity=0.040  Sum_probs=57.0

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcC--Cc-E-EEEcCCHHHHHHHHc-CCCceEEecCCccchhhhhhcc---CCCCceeEE
Q 024647           33 NHELAWDVGTGSGQAAASLSGIF--EN-V-IGTETSPKQIEFATK-LPNIRYELTSPAMSIAELEQNV---AAQSTVDLV  104 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~--~~-v-~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~---~~~~~~Dlv  104 (265)
                      ...+++|+-||.|.++..+.+.+  .+ + .++|+++..++..+. .++. ...       +|+.++.   ++...+|++
T Consensus         9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~-~~~-------~DI~~~~~~~i~~~~~Dil   80 (327)
T 3qv2_A            9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE-VQV-------KNLDSISIKQIESLNCNTW   80 (327)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC-CBC-------CCTTTCCHHHHHHTCCCEE
T ss_pred             CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC-ccc-------CChhhcCHHHhccCCCCEE
Confidence            44689999999999999999887  34 5 699999999886654 2332 233       3333321   122368999


Q ss_pred             EeccccccC------------Chh-HHHHHHHH-Hhc
Q 024647          105 TIAQAMHWF------------DLP-QFYNQVKW-VLK  127 (265)
Q Consensus       105 ~~~~~~~~~------------~~~-~~l~~~~~-~Lk  127 (265)
                      +....+.-+            |.. .++.++.+ +++
T Consensus        81 ~ggpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~  117 (327)
T 3qv2_A           81 FMSPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILP  117 (327)
T ss_dssp             EECCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGG
T ss_pred             EecCCccCcccccCCCCCCCccccchhHHHHHHHHHH
Confidence            987643322            222 46777777 654

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=92.76  E-value=0.13  Score=38.51  Aligned_cols=109  Identities=14%  Similarity=0.107  Sum_probs=62.9

Q ss_pred             HHHHHHhhC-CCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCC
Q 024647           23 LFKFITSKT-TNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQS   99 (265)
Q Consensus        23 l~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   99 (265)
                      .+++..... .-..-|||+|-|+|..=-+|.+.++  +|+++|-.-..-..+. -+.-.++.++++-+...+.  ..-..
T Consensus        29 ~L~~a~~~v~~~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp~~~-P~~e~~ilGdi~~tL~~~~--~r~g~  105 (174)
T 3iht_A           29 CLEHAIAQTAGLSGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHPDST-PPEAQLILGDIRETLPATL--ERFGA  105 (174)
T ss_dssp             HHHHHHHHTTTCCSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCGGGC-CCGGGEEESCHHHHHHHHH--HHHCS
T ss_pred             HHHHHHHHhcCCCCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCCCCC-CchHheecccHHHHHHHHH--HhcCC
Confidence            344444443 3456699999999999999999987  5998885322111111 1445666644321111000  00134


Q ss_pred             ceeEEEeccccccCChh-----HHHHHHHHHhcCCCcEEEE
Q 024647          100 TVDLVTIAQAMHWFDLP-----QFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus       100 ~~Dlv~~~~~~~~~~~~-----~~l~~~~~~Lk~pgG~l~~  135 (265)
                      +.-++.+....|.-+..     .+-..+..+|. |||.++-
T Consensus       106 ~a~LaHaD~G~g~~~~d~a~a~~lsplI~~~la-~GGi~vS  145 (174)
T 3iht_A          106 TASLVHADLGGHNREKNDRFARLISPLIEPHLA-QGGLMVS  145 (174)
T ss_dssp             CEEEEEECCCCSCHHHHHHHHHHHHHHHGGGEE-EEEEEEE
T ss_pred             ceEEEEeecCCCCcchhHHHHHhhhHHHHHHhc-CCcEEEe
Confidence            56677776666654322     23445677888 8998775

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=92.76  E-value=1.1  Score=34.08  Aligned_cols=96  Identities=18%  Similarity=0.067  Sum_probs=56.0

Q ss_pred             CCeEEEEcCCc-ch-hHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecccc
Q 024647           34 HELAWDVGTGS-GQ-AAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAM  110 (265)
Q Consensus        34 ~~~vlDvGcG~-G~-~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~  110 (265)
                      +++|+-+|||. |. ++..|.+. +.+|+++|.++..++.++. .++....++.... ..+... ..-..+|+|+.... 
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~-~g~~~~~gd~~~~-~~l~~~-~~~~~ad~vi~~~~-  114 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRS-EGRNVISGDATDP-DFWERI-LDTGHVKLVLLAMP-  114 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH-TTCCEEECCTTCH-HHHHTB-CSCCCCCEEEECCS-
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH-CCCCEEEcCCCCH-HHHHhc-cCCCCCCEEEEeCC-
Confidence            46899999985 43 33445566 7899999999998888775 3555555443110 112222 02346899987532 


Q ss_pred             ccCChh--HHHHHHHHHhcCCCcEEEEEe
Q 024647          111 HWFDLP--QFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       111 ~~~~~~--~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                         +..  ..+-...+.+. |++.++...
T Consensus       115 ---~~~~~~~~~~~~~~~~-~~~~ii~~~  139 (183)
T 3c85_A          115 ---HHQGNQTALEQLQRRN-YKGQIAAIA  139 (183)
T ss_dssp             ---SHHHHHHHHHHHHHTT-CCSEEEEEE
T ss_pred             ---ChHHHHHHHHHHHHHC-CCCEEEEEE
Confidence               211  22233455566 677776543

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=92.56  E-value=0.35  Score=45.18  Aligned_cols=105  Identities=15%  Similarity=0.230  Sum_probs=61.6

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcC------------C--cEEEEcC---CHHHHHHHHc-CC------------------C
Q 024647           33 NHELAWDVGTGSGQAAASLSGIF------------E--NVIGTET---SPKQIEFATK-LP------------------N   76 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~------------~--~v~~vD~---s~~~~~~a~~-~~------------------~   76 (265)
                      +.-+|+|+|-|+|.......+..            .  +++++|.   +++.+..+-. .+                  +
T Consensus        66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (676)
T 3ps9_A           66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  145 (676)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred             CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence            34589999999997776654321            1  3899999   7777764322 11                  1


Q ss_pred             c---eEEe--cCCccchhhhhhc-c-CC---CCceeEEEeccccccCCh----hHHHHHHHHHhcCCCcEEEEEec
Q 024647           77 I---RYEL--TSPAMSIAELEQN-V-AA---QSTVDLVTIAQAMHWFDL----PQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        77 ~---~~~~--~~~~~~~~d~~~~-~-~~---~~~~Dlv~~~~~~~~~~~----~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      .   .+..  ....+..+|+.+. + +.   ...+|+++...--.-.++    ..+++.+.++++ |||++..+..
T Consensus       146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~-~g~~~~t~~~  220 (676)
T 3ps9_A          146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLAR-PGGTLATFTS  220 (676)
T ss_dssp             EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEE-EEEEEEESCC
T ss_pred             ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhC-CCCEEEeccC
Confidence            1   0100  0111223444332 1 11   367999987542221222    478999999999 9999886543

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=92.45  E-value=0.52  Score=34.18  Aligned_cols=70  Identities=16%  Similarity=0.162  Sum_probs=45.1

Q ss_pred             CeEEEEcCCc-ch-hHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           35 ELAWDVGTGS-GQ-AAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        35 ~~vlDvGcG~-G~-~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      ++++-+|||. |. ++..|.+.+.+|+++|.+++.++.++. .+..+..++.... ..+...  ....+|+|+...
T Consensus         7 ~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~-~~~~~~~gd~~~~-~~l~~~--~~~~~d~vi~~~   78 (141)
T 3llv_A            7 YEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLED-EGFDAVIADPTDE-SFYRSL--DLEGVSAVLITG   78 (141)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH-TTCEEEECCTTCH-HHHHHS--CCTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH-CCCcEEECCCCCH-HHHHhC--CcccCCEEEEec
Confidence            5789999975 32 333455567899999999999888765 3566666554211 112222  234689988754

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=92.32  E-value=0.35  Score=43.34  Aligned_cols=50  Identities=14%  Similarity=0.005  Sum_probs=39.4

Q ss_pred             CeEEEEcCCcchhHHHHHhcCCc-EEEEcCCHHHHHHHHc-C---CCceEEecCC
Q 024647           35 ELAWDVGTGSGQAAASLSGIFEN-VIGTETSPKQIEFATK-L---PNIRYELTSP   84 (265)
Q Consensus        35 ~~vlDvGcG~G~~~~~l~~~~~~-v~~vD~s~~~~~~a~~-~---~~~~~~~~~~   84 (265)
                      .+++|+-||.|.++..+.+.+.+ |.++|+++..++.-+. .   ++......++
T Consensus        89 ~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~~p~~~~~~~DI  143 (482)
T 3me5_A           89 FRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDI  143 (482)
T ss_dssp             EEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCCTTTCEEESCT
T ss_pred             ceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcccCCCcceeccch
Confidence            57999999999999999988765 7899999998886553 2   4555666444

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=92.10  E-value=0.88  Score=38.25  Aligned_cols=87  Identities=18%  Similarity=0.284  Sum_probs=57.5

Q ss_pred             CeEEEEcCCc--chhHHHHHhcCC--cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhh-ccCCCCceeEEEeccc
Q 024647           35 ELAWDVGTGS--GQAAASLSGIFE--NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQ-NVAAQSTVDLVTIAQA  109 (265)
Q Consensus        35 ~~vlDvGcG~--G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~Dlv~~~~~  109 (265)
                      ++|.=||+|.  |.++..|.+.+.  +|+++|.+++.++.+.+...+....       .+.++ .   -...|+|+.+-.
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~-------~~~~~~~---~~~aDvVilavp  103 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGT-------TSIAKVE---DFSPDFVMLSSP  103 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEE-------SCTTGGG---GGCCSEEEECSC
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhc-------CCHHHHh---hccCCEEEEeCC
Confidence            6799999986  355666777777  8999999999888877542221112       12222 1   135799997643


Q ss_pred             cccCChhHHHHHHHHHhcCCCcEEE
Q 024647          110 MHWFDLPQFYNQVKWVLKKPNGVIA  134 (265)
Q Consensus       110 ~~~~~~~~~l~~~~~~Lk~pgG~l~  134 (265)
                      ..  ....+++++...|+ ++.+++
T Consensus       104 ~~--~~~~vl~~l~~~l~-~~~iv~  125 (314)
T 3ggo_A          104 VR--TFREIAKKLSYILS-EDATVT  125 (314)
T ss_dssp             GG--GHHHHHHHHHHHSC-TTCEEE
T ss_pred             HH--HHHHHHHHHhhccC-CCcEEE
Confidence            22  23467888888898 777654

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=92.01  E-value=1.3  Score=31.65  Aligned_cols=94  Identities=12%  Similarity=0.005  Sum_probs=52.7

Q ss_pred             CCeEEEEcCCc-c-hhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhcc-CCCCceeEEEecccc
Q 024647           34 HELAWDVGTGS-G-QAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNV-AAQSTVDLVTIAQAM  110 (265)
Q Consensus        34 ~~~vlDvGcG~-G-~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~Dlv~~~~~~  110 (265)
                      .++|+=+|||. | .++..|.+.+.+|+++|.++..++..+...++.....+.    .+.+.+. .....+|+|+....-
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~----~~~~~l~~~~~~~~d~vi~~~~~   79 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDC----TKIKTLEDAGIEDADMYIAVTGK   79 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCT----TSHHHHHHTTTTTCSEEEECCSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCC----CCHHHHHHcCcccCCEEEEeeCC
Confidence            36788888865 3 223344556778999999999887665322455555433    1111111 112468999876422


Q ss_pred             ccCChhHHHHHHHHHhcCCCcEEEE
Q 024647          111 HWFDLPQFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus       111 ~~~~~~~~l~~~~~~Lk~pgG~l~~  135 (265)
                      .  .....+..+.+.+. ++ .+++
T Consensus        80 ~--~~~~~~~~~~~~~~-~~-~ii~  100 (140)
T 1lss_A           80 E--EVNLMSSLLAKSYG-IN-KTIA  100 (140)
T ss_dssp             H--HHHHHHHHHHHHTT-CC-CEEE
T ss_pred             c--hHHHHHHHHHHHcC-CC-EEEE
Confidence            1  11234555666677 65 4444

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=91.36  E-value=1.1  Score=37.70  Aligned_cols=103  Identities=11%  Similarity=0.023  Sum_probs=64.0

Q ss_pred             CeEEEEcCCcchhHHHHHh-cCCcEEEEcCCHHHHHHHHc---------CCCceEEecCCccch-hhhhhccCCCCceeE
Q 024647           35 ELAWDVGTGSGQAAASLSG-IFENVIGTETSPKQIEFATK---------LPNIRYELTSPAMSI-AELEQNVAAQSTVDL  103 (265)
Q Consensus        35 ~~vlDvGcG~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~---------~~~~~~~~~~~~~~~-~d~~~~~~~~~~~Dl  103 (265)
                      .-||++|||-=.....+.. ....++=|| .|.+++..++         ..+..++..+.+..- ..+....+.....-+
T Consensus       104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~Pt~  182 (310)
T 2uyo_A          104 RQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSARTA  182 (310)
T ss_dssp             CEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCEE
T ss_pred             CeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCCCEE
Confidence            4599999998776666652 234688888 5888776543         134556665543200 011111123345667


Q ss_pred             EEeccccccCChh---HHHHHHHHHhcCCCcEEEEEecC
Q 024647          104 VTIAQAMHWFDLP---QFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       104 v~~~~~~~~~~~~---~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +++..++|+++++   .+++.+...+. ||+.+++....
T Consensus       183 ~i~Egvl~Yl~~~~~~~ll~~l~~~~~-~gs~l~~d~~~  220 (310)
T 2uyo_A          183 WLAEGLLMYLPATAQDGLFTEIGGLSA-VGSRIAVETSP  220 (310)
T ss_dssp             EEECSCGGGSCHHHHHHHHHHHHHTCC-TTCEEEEECCC
T ss_pred             EEEechHhhCCHHHHHHHHHHHHHhCC-CCeEEEEEecC
Confidence            7778899999554   57777777777 88888875544

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=91.14  E-value=0.2  Score=41.78  Aligned_cols=42  Identities=19%  Similarity=0.289  Sum_probs=31.0

Q ss_pred             CCCCceeEEEeccccccC---------------------ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647           96 AAQSTVDLVTIAQAMHWF---------------------DLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        96 ~~~~~~Dlv~~~~~~~~~---------------------~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      +++++||+|+++-..+-.                     ....++.++.++|+ |||.+++...
T Consensus        36 l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk-~~G~l~i~~~   98 (297)
T 2zig_A           36 FPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLV-PGGRLVIVVG   98 (297)
T ss_dssp             SCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEEEEC
T ss_pred             CCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcC-CCcEEEEEEC
Confidence            467899999998754311                     12357789999999 9999987654

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=90.91  E-value=0.48  Score=40.32  Aligned_cols=95  Identities=20%  Similarity=0.098  Sum_probs=55.9

Q ss_pred             CCCCeEEEEcC-C-cchhHHHHHhcC--CcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647           32 TNHELAWDVGT-G-SGQAAASLSGIF--ENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIA  107 (265)
Q Consensus        32 ~~~~~vlDvGc-G-~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~  107 (265)
                      .++++||-.|+ | .|.++..+++..  .+|++++ ++.-.+.++ ........... .....+.++  ..+.+|+|+-.
T Consensus       141 ~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~-~ga~~~~~~~~-~~~~~~~~~--~~~g~Dvv~d~  215 (349)
T 4a27_A          141 REGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK-DSVTHLFDRNA-DYVQEVKRI--SAEGVDIVLDC  215 (349)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG-GGSSEEEETTS-CHHHHHHHH--CTTCEEEEEEE
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH-cCCcEEEcCCc-cHHHHHHHh--cCCCceEEEEC
Confidence            56789999998 4 378888888764  4788888 555566665 32222222211 111223333  24579999965


Q ss_pred             cccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      ..     . ..+..+.+.|+ ++|++++...
T Consensus       216 ~g-----~-~~~~~~~~~l~-~~G~~v~~G~  239 (349)
T 4a27_A          216 LC-----G-DNTGKGLSLLK-PLGTYILYGS  239 (349)
T ss_dssp             CC-------------CTTEE-EEEEEEEEC-
T ss_pred             CC-----c-hhHHHHHHHhh-cCCEEEEECC
Confidence            32     1 23477889999 9999987654

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=90.66  E-value=0.31  Score=42.13  Aligned_cols=75  Identities=8%  Similarity=-0.001  Sum_probs=44.7

Q ss_pred             CCCCeEEEEc--CCc-chhHHHHHh-cCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647           32 TNHELAWDVG--TGS-GQAAASLSG-IFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIA  107 (265)
Q Consensus        32 ~~~~~vlDvG--cG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~  107 (265)
                      .++++||-+|  +|. |.++..+++ .+++|++++.+++-++.++++................+.+. .....+|+|+-.
T Consensus       169 ~~g~~vlV~gag~G~vG~~a~q~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~v~~~-t~~~g~d~v~d~  247 (379)
T 3iup_A          169 LEGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQADLLKAQGAVHVCNAASPTFMQDLTEA-LVSTGATIAFDA  247 (379)
T ss_dssp             HTTCSCEEESSTTSHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHTTCSCEEETTSTTHHHHHHHH-HHHHCCCEEEES
T ss_pred             cCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCcEEEeCCChHHHHHHHHH-hcCCCceEEEEC
Confidence            4567888884  442 666666665 46799999999999999987543333332211111112222 122358999865

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=90.59  E-value=0.54  Score=44.05  Aligned_cols=104  Identities=15%  Similarity=0.148  Sum_probs=60.8

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcC--------------CcEEEEcC---CHHHHHHHHcC-------------------CC
Q 024647           33 NHELAWDVGTGSGQAAASLSGIF--------------ENVIGTET---SPKQIEFATKL-------------------PN   76 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~--------------~~v~~vD~---s~~~~~~a~~~-------------------~~   76 (265)
                      +.-+|+|+|.|+|.....+.+.+              -+++.+|.   +...+..+-..                   ++
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  137 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG  137 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence            44689999999998777765431              14899999   55555542210                   11


Q ss_pred             ceEE-e----cCCccchhhhhhc-c-CC---CCceeEEEeccccccCC----hhHHHHHHHHHhcCCCcEEEEEe
Q 024647           77 IRYE-L----TSPAMSIAELEQN-V-AA---QSTVDLVTIAQAMHWFD----LPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        77 ~~~~-~----~~~~~~~~d~~~~-~-~~---~~~~Dlv~~~~~~~~~~----~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      ..-. .    ....+..+|+.+. + +.   ++.+|.++....-.-.+    ...++..+.++++ |||++....
T Consensus       138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~-~g~~~~t~~  211 (689)
T 3pvc_A          138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTR-PGGTFSTFT  211 (689)
T ss_dssp             EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEE-EEEEEEESC
T ss_pred             ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhC-CCCEEEecc
Confidence            1100 0    0122233555432 2 11   46799998754211112    2579999999999 999987543

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=90.55  E-value=1.8  Score=37.87  Aligned_cols=95  Identities=15%  Similarity=0.061  Sum_probs=60.9

Q ss_pred             CCeEEEEcCCc-chh-HHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhcc-CCCCceeEEEecccc
Q 024647           34 HELAWDVGTGS-GQA-AASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNV-AAQSTVDLVTIAQAM  110 (265)
Q Consensus        34 ~~~vlDvGcG~-G~~-~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~Dlv~~~~~~  110 (265)
                      .++|+=+|||. |.. +..|.+.+..|+++|.++..++.++. .++..+.+++    .+.+.+. ..-...|+|++... 
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~-~g~~vi~GDa----t~~~~L~~agi~~A~~viv~~~-   77 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRK-FGMKVFYGDA----TRMDLLESAGAAKAEVLINAID-   77 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHH-TTCCCEESCT----TCHHHHHHTTTTTCSEEEECCS-
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHh-CCCeEEEcCC----CCHHHHHhcCCCccCEEEECCC-
Confidence            46789999975 433 33445567789999999999998876 3566677655    2222221 12356898887632 


Q ss_pred             ccCChh--HHHHHHHHHhcCCCcEEEEEec
Q 024647          111 HWFDLP--QFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       111 ~~~~~~--~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                         +..  ..+-...+-+. |+..++.-..
T Consensus        78 ---~~~~n~~i~~~ar~~~-p~~~Iiara~  103 (413)
T 3l9w_A           78 ---DPQTNLQLTEMVKEHF-PHLQIIARAR  103 (413)
T ss_dssp             ---SHHHHHHHHHHHHHHC-TTCEEEEEES
T ss_pred             ---ChHHHHHHHHHHHHhC-CCCeEEEEEC
Confidence               222  34556677788 7877766443

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=89.79  E-value=0.3  Score=42.33  Aligned_cols=98  Identities=14%  Similarity=0.123  Sum_probs=58.8

Q ss_pred             CCCeEEEEcCCc-chhHHHHH-hcCCcEEEEcCCHHHHHHHHcCCCceEEecCC-------c----------cchhhhhh
Q 024647           33 NHELAWDVGTGS-GQAAASLS-GIFENVIGTETSPKQIEFATKLPNIRYELTSP-------A----------MSIAELEQ   93 (265)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~-------~----------~~~~d~~~   93 (265)
                      ++.+|+-+|+|. |.....++ ..+++|+++|.++..++.+... +..+...+.       .          ....++.+
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~l-Ga~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e  261 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSV-GAQWLDLGIDAAGEGGYARELSEAERAQQQQALED  261 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHT-TCEECCCC-------------CHHHHHHHHHHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-CCeEEeccccccccccchhhhhHHHHhhhHHHHHH
Confidence            567899999996 65555544 4578999999999988888763 333332110       0          00011222


Q ss_pred             ccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEE
Q 024647           94 NVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus        94 ~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~  135 (265)
                      .   -...|+|+..-.+.-- .+.-+-+++.+.+| ||++++=
T Consensus       262 ~---l~~aDIVI~tv~iPg~~ap~Lvt~emv~~Mk-pGsVIVD  300 (381)
T 3p2y_A          262 A---ITKFDIVITTALVPGRPAPRLVTAAAATGMQ-PGSVVVD  300 (381)
T ss_dssp             H---HTTCSEEEECCCCTTSCCCCCBCHHHHHTSC-TTCEEEE
T ss_pred             H---HhcCCEEEECCCCCCcccceeecHHHHhcCC-CCcEEEE
Confidence            1   1468999965221111 12224578899999 8887763

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=89.51  E-value=1.6  Score=35.60  Aligned_cols=84  Identities=17%  Similarity=0.158  Sum_probs=51.8

Q ss_pred             eEEEEcCCc-c-hhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCce-EEecCCccchhhhhhccCCCCceeEEEecccccc
Q 024647           36 LAWDVGTGS-G-QAAASLSGIFENVIGTETSPKQIEFATKLPNIR-YELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHW  112 (265)
Q Consensus        36 ~vlDvGcG~-G-~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~  112 (265)
                      +|.=||||. | .++..|.+.+.+|+++|.+++.++.+.+. ++. ...       .+.++.    ...|+|+..-.-+ 
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-g~~~~~~-------~~~~~~----~~~D~vi~av~~~-   68 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVER-QLVDEAG-------QDLSLL----QTAKIIFLCTPIQ-   68 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT-TSCSEEE-------SCGGGG----TTCSEEEECSCHH-
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhC-CCCcccc-------CCHHHh----CCCCEEEEECCHH-
Confidence            577899986 3 34455666777899999999988776643 221 111       223322    3579999764211 


Q ss_pred             CChhHHHHHHHHHhcCCCcEEE
Q 024647          113 FDLPQFYNQVKWVLKKPNGVIA  134 (265)
Q Consensus       113 ~~~~~~l~~~~~~Lk~pgG~l~  134 (265)
                       ....+++++...++ ++..++
T Consensus        69 -~~~~~~~~l~~~~~-~~~~vv   88 (279)
T 2f1k_A           69 -LILPTLEKLIPHLS-PTAIVT   88 (279)
T ss_dssp             -HHHHHHHHHGGGSC-TTCEEE
T ss_pred             -HHHHHHHHHHhhCC-CCCEEE
Confidence             22356677777777 676554

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=89.09  E-value=0.88  Score=38.79  Aligned_cols=100  Identities=12%  Similarity=0.057  Sum_probs=55.7

Q ss_pred             CCC-CeEEEEcC-Cc-chhHHHHHhc-CCcEEEEcCCHHH----HHHHHcCCCceEEecCC---ccchhhhhhccC-CCC
Q 024647           32 TNH-ELAWDVGT-GS-GQAAASLSGI-FENVIGTETSPKQ----IEFATKLPNIRYELTSP---AMSIAELEQNVA-AQS   99 (265)
Q Consensus        32 ~~~-~~vlDvGc-G~-G~~~~~l~~~-~~~v~~vD~s~~~----~~~a~~~~~~~~~~~~~---~~~~~d~~~~~~-~~~   99 (265)
                      .++ ++||-.|+ |. |.++..+++. +++++++..++..    .+.++++.........-   ......+.++.. ..+
T Consensus       165 ~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~i~~~t~~~~~  244 (364)
T 1gu7_A          165 TPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGG  244 (364)
T ss_dssp             CTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTC
T ss_pred             CCCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHHhcCCeEEEecCccchHHHHHHHHHHhhccCC
Confidence            567 89999997 54 8888888764 6787777544332    34444432222222100   000011111100 134


Q ss_pred             ceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          100 TVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       100 ~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      .+|+|+-...     ..... .+.++|+ ++|+++....
T Consensus       245 g~Dvvid~~G-----~~~~~-~~~~~l~-~~G~~v~~g~  276 (364)
T 1gu7_A          245 EAKLALNCVG-----GKSST-GIARKLN-NNGLMLTYGG  276 (364)
T ss_dssp             CEEEEEESSC-----HHHHH-HHHHTSC-TTCEEEECCC
T ss_pred             CceEEEECCC-----chhHH-HHHHHhc-cCCEEEEecC
Confidence            6999996532     23334 7789999 9999987554

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=88.97  E-value=2.2  Score=34.76  Aligned_cols=88  Identities=18%  Similarity=0.259  Sum_probs=52.7

Q ss_pred             eEEEEcCCc-c-hhHHHHHhcCC--cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccccc
Q 024647           36 LAWDVGTGS-G-QAAASLSGIFE--NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMH  111 (265)
Q Consensus        36 ~vlDvGcG~-G-~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~  111 (265)
                      +|.=||+|. | .++..|.+.+.  +|+++|.++..++.+++..-.....       .+.++. ... ..|+|+..-.-.
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~-------~~~~~~-~~~-~aDvVilavp~~   73 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGT-------TSIAKV-EDF-SPDFVMLSSPVR   73 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEE-------SCGGGG-GGT-CCSEEEECSCHH
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCccccc-------CCHHHH-hcC-CCCEEEEcCCHH
Confidence            577899986 3 44455666665  7999999999888776532111111       122222 111 579998763222


Q ss_pred             cCChhHHHHHHHHHhcCCCcEEEE
Q 024647          112 WFDLPQFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus       112 ~~~~~~~l~~~~~~Lk~pgG~l~~  135 (265)
                        ....++.++...++ ++..++.
T Consensus        74 --~~~~v~~~l~~~l~-~~~iv~~   94 (281)
T 2g5c_A           74 --TFREIAKKLSYILS-EDATVTD   94 (281)
T ss_dssp             --HHHHHHHHHHHHSC-TTCEEEE
T ss_pred             --HHHHHHHHHHhhCC-CCcEEEE
Confidence              22356777777888 7875554

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=88.14  E-value=0.68  Score=39.70  Aligned_cols=71  Identities=17%  Similarity=0.068  Sum_probs=42.8

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      ...++|+-+|||. |...........+|+.+|.+...++.++.  .+.....++    .|.+.+...-...|+|++..
T Consensus        14 g~~mkilvlGaG~vG~~~~~~L~~~~~v~~~~~~~~~~~~~~~--~~~~~~~d~----~d~~~l~~~~~~~DvVi~~~   85 (365)
T 3abi_A           14 GRHMKVLILGAGNIGRAIAWDLKDEFDVYIGDVNNENLEKVKE--FATPLKVDA----SNFDKLVEVMKEFELVIGAL   85 (365)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHTTTSEEEEEESCHHHHHHHTT--TSEEEECCT----TCHHHHHHHHTTCSEEEECC
T ss_pred             CCccEEEEECCCHHHHHHHHHHhcCCCeEEEEcCHHHHHHHhc--cCCcEEEec----CCHHHHHHHHhCCCEEEEec
Confidence            3557899999963 54444333445679999999999888874  444555444    23222221113579988753

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=88.00  E-value=1.7  Score=37.57  Aligned_cols=113  Identities=19%  Similarity=0.140  Sum_probs=72.5

Q ss_pred             hCCCCcHHHHHHHHhhCC-CCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhh
Q 024647           15 TRPNYPEELFKFITSKTT-NHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQ   93 (265)
Q Consensus        15 ~rp~y~~~l~~~l~~~~~-~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   93 (265)
                      .-++||+...+.|..+.. ...+||.++-+-|.++..+... .+++.+.-|-......+. .+......      ..   
T Consensus        26 ~~~~~~~~~~~~l~~~~~~~~~~~l~~n~~~g~~~~~~~~~-~~~~~~~~~~~~~~~l~~-~~~~~~~~------~~---   94 (381)
T 3dmg_A           26 GARGYRDPVHDLLQKTVEPFGERALDLNPGVGWGSLPLEGR-MAVERLETSRAAFRCLTA-SGLQARLA------LP---   94 (381)
T ss_dssp             TCSSSSCHHHHHHHTTCCCCSSEEEESSCTTSTTTGGGBTT-BEEEEEECBHHHHHHHHH-TTCCCEEC------CG---
T ss_pred             CCCCCCChHHHHHHHHHHHhCCcEEEecCCCCccccccCCC-CceEEEeCcHHHHHHHHH-cCCCcccc------CC---
Confidence            445788888888888763 4568999999999988877533 567766545544444432 12211111      11   


Q ss_pred             ccCCCCceeEEEeccccccC--ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           94 NVAAQSTVDLVTIAQAMHWF--DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        94 ~~~~~~~~Dlv~~~~~~~~~--~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +..+...||+|+....-+--  .....+.++.+.|+ |||.+++..-.
T Consensus        95 ~~~~~~~~d~v~~~~Pk~k~~~~~~~~l~~~~~~l~-~g~~i~~~g~~  141 (381)
T 3dmg_A           95 WEAAAGAYDLVVLALPAGRGTAYVQASLVAAARALR-MGGRLYLAGDK  141 (381)
T ss_dssp             GGSCTTCEEEEEEECCGGGCHHHHHHHHHHHHHHEE-EEEEEEEEEEG
T ss_pred             ccCCcCCCCEEEEECCcchhHHHHHHHHHHHHHhCC-CCCEEEEEEcc
Confidence            22245689999976432211  12467888899999 99999887654

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=87.87  E-value=1.2  Score=36.67  Aligned_cols=88  Identities=23%  Similarity=0.158  Sum_probs=54.1

Q ss_pred             CeEEEEcCCc-c-hhHHHHHhcCCcEEEEcCCHHHHHHHHcC-----------C-------------CceEEecCCccch
Q 024647           35 ELAWDVGTGS-G-QAAASLSGIFENVIGTETSPKQIEFATKL-----------P-------------NIRYELTSPAMSI   88 (265)
Q Consensus        35 ~~vlDvGcG~-G-~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----------~-------------~~~~~~~~~~~~~   88 (265)
                      ++|.=||+|. | .++..++..+.+|+.+|.+++.++.+.+.           .             ++.. .       
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~-------   76 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY-S-------   76 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-E-------
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-e-------
Confidence            4678889986 3 44555667788999999999988776531           0             0111 1       


Q ss_pred             hhhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEE
Q 024647           89 AELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIA  134 (265)
Q Consensus        89 ~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~  134 (265)
                      .++++.   -...|+|+.+-.-..-....+++++...++ |+.+++
T Consensus        77 ~~~~~~---~~~aDlVi~av~~~~~~~~~v~~~l~~~~~-~~~il~  118 (283)
T 4e12_A           77 DDLAQA---VKDADLVIEAVPESLDLKRDIYTKLGELAP-AKTIFA  118 (283)
T ss_dssp             SCHHHH---TTTCSEEEECCCSCHHHHHHHHHHHHHHSC-TTCEEE
T ss_pred             CCHHHH---hccCCEEEEeccCcHHHHHHHHHHHHhhCC-CCcEEE
Confidence            122221   135799997632211112457888888888 777654

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=87.80  E-value=0.84  Score=41.00  Aligned_cols=90  Identities=16%  Similarity=0.086  Sum_probs=57.8

Q ss_pred             CCCCCeEEEEcCCc-chhHHHHHh-cCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           31 TTNHELAWDVGTGS-GQAAASLSG-IFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      ...+++|+-+|+|. |......++ .+.+|+++|+++..++.++.. +....  +       +++. .  ...|+|+...
T Consensus       271 ~l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~-Ga~~~--~-------l~e~-l--~~aDvVi~at  337 (494)
T 3ce6_A          271 LIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMME-GFDVV--T-------VEEA-I--GDADIVVTAT  337 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT-TCEEC--C-------HHHH-G--GGCSEEEECS
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-CCEEe--c-------HHHH-H--hCCCEEEECC
Confidence            35678999999986 555544444 467899999999988777653 33321  1       2222 1  3579999764


Q ss_pred             ccccCChhHHH-HHHHHHhcCCCcEEEEEecC
Q 024647          109 AMHWFDLPQFY-NQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       109 ~~~~~~~~~~l-~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      .-.     ..+ .+..+.|| +||+++.....
T Consensus       338 gt~-----~~i~~~~l~~mk-~ggilvnvG~~  363 (494)
T 3ce6_A          338 GNK-----DIIMLEHIKAMK-DHAILGNIGHF  363 (494)
T ss_dssp             SSS-----CSBCHHHHHHSC-TTCEEEECSSS
T ss_pred             CCH-----HHHHHHHHHhcC-CCcEEEEeCCC
Confidence            221     122 35677799 99998865544

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=87.64  E-value=2.7  Score=32.84  Aligned_cols=95  Identities=14%  Similarity=-0.015  Sum_probs=54.1

Q ss_pred             CeEEEEcCCc-c-hhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecccccc
Q 024647           35 ELAWDVGTGS-G-QAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHW  112 (265)
Q Consensus        35 ~~vlDvGcG~-G-~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~  112 (265)
                      ++|+=+|+|. | .++..|.+.+.+|+++|.+++.++...+..+..+..+++... ..++..  .-..+|+|++...-. 
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~-~~l~~a--~i~~ad~vi~~~~~d-   76 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHK-EILRDA--EVSKNDVVVILTPRD-   76 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSH-HHHHHH--TCCTTCEEEECCSCH-
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCH-HHHHhc--CcccCCEEEEecCCc-
Confidence            3577788754 2 233334456778999999999888754324667777665211 112222  234689998763211 


Q ss_pred             CChhHHHHHHHHHhcCCCcEEEE
Q 024647          113 FDLPQFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus       113 ~~~~~~l~~~~~~Lk~pgG~l~~  135 (265)
                       .....+....+.+. |...++.
T Consensus        77 -~~n~~~~~~a~~~~-~~~~iia   97 (218)
T 3l4b_C           77 -EVNLFIAQLVMKDF-GVKRVVS   97 (218)
T ss_dssp             -HHHHHHHHHHHHTS-CCCEEEE
T ss_pred             -HHHHHHHHHHHHHc-CCCeEEE
Confidence             11234455555566 5666655

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=87.49  E-value=1.3  Score=38.06  Aligned_cols=89  Identities=11%  Similarity=0.079  Sum_probs=55.9

Q ss_pred             CCeEEEEcCCc-c-hhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccccc
Q 024647           34 HELAWDVGTGS-G-QAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMH  111 (265)
Q Consensus        34 ~~~vlDvGcG~-G-~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~  111 (265)
                      .++|.=||+|. | .++..|++.+.+|++.|.++..++.+... ++...        .+.++.-......|+|+..-.-.
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~-g~~~~--------~s~~e~~~~a~~~DvVi~~vp~~   92 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALERE-GIAGA--------RSIEEFCAKLVKPRVVWLMVPAA   92 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTT-TCBCC--------SSHHHHHHHSCSSCEEEECSCGG
T ss_pred             CCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHC-CCEEe--------CCHHHHHhcCCCCCEEEEeCCHH
Confidence            36788999986 3 44556777888999999999988877652 22211        12222211112459888764332


Q ss_pred             cCChhHHHHHHHHHhcCCCcEEE
Q 024647          112 WFDLPQFYNQVKWVLKKPNGVIA  134 (265)
Q Consensus       112 ~~~~~~~l~~~~~~Lk~pgG~l~  134 (265)
                        ....++..+...|+ +|.+++
T Consensus        93 --~v~~vl~~l~~~l~-~g~iiI  112 (358)
T 4e21_A           93 --VVDSMLQRMTPLLA-ANDIVI  112 (358)
T ss_dssp             --GHHHHHHHHGGGCC-TTCEEE
T ss_pred             --HHHHHHHHHHhhCC-CCCEEE
Confidence              34567777777787 665554

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=87.30  E-value=0.45  Score=41.59  Aligned_cols=98  Identities=15%  Similarity=0.164  Sum_probs=58.7

Q ss_pred             CCCeEEEEcCCc-chhHHHHHh-cCCcEEEEcCCHHHHHHHHcCCCceEEecCCc----------cc-----------hh
Q 024647           33 NHELAWDVGTGS-GQAAASLSG-IFENVIGTETSPKQIEFATKLPNIRYELTSPA----------MS-----------IA   89 (265)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~----------~~-----------~~   89 (265)
                      ++.+|+-+|+|. |.....++. .+++|+++|.++..++.++.. +..+.....+          ..           ..
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~-G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~  267 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASL-GAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAA  267 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHT-TCEECCCCC-----------------CHHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHc-CCceeecccccccccccccchhhhcchhhhhhhHh
Confidence            468899999996 666655554 567999999999988888764 3333221100          00           01


Q ss_pred             hhhhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEE
Q 024647           90 ELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus        90 d~~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~  135 (265)
                      ++.+.   -...|+|+..-.+.-- .+.-+-+++.+.+| ||++++=
T Consensus       268 ~l~e~---l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk-~GsVIVD  310 (405)
T 4dio_A          268 LVAEH---IAKQDIVITTALIPGRPAPRLVTREMLDSMK-PGSVVVD  310 (405)
T ss_dssp             HHHHH---HHTCSEEEECCCCSSSCCCCCBCHHHHTTSC-TTCEEEE
T ss_pred             HHHHH---hcCCCEEEECCcCCCCCCCEEecHHHHhcCC-CCCEEEE
Confidence            11111   1357999864221111 22234578899999 8988764

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=87.09  E-value=0.83  Score=38.57  Aligned_cols=42  Identities=19%  Similarity=0.193  Sum_probs=32.1

Q ss_pred             CCCCceeEEEecccccc--------------C-ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647           96 AAQSTVDLVTIAQAMHW--------------F-DLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        96 ~~~~~~Dlv~~~~~~~~--------------~-~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      ++++++|+|++.-...-              . ....++.++.++|+ |||.++++..
T Consensus        29 l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk-~~G~i~i~~~   85 (323)
T 1boo_A           29 FPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLK-PDGSFVVDFG   85 (323)
T ss_dssp             SCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEE-EEEEEEEEEC
T ss_pred             CCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCc-CCcEEEEEEC
Confidence            46789999999864421              1 24578899999999 9999988654

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=87.08  E-value=0.47  Score=40.77  Aligned_cols=97  Identities=18%  Similarity=0.163  Sum_probs=57.3

Q ss_pred             CCeEEEEcCCc-chhHHHHH-hcCCcEEEEcCCHHHHHHHHcC--CCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647           34 HELAWDVGTGS-GQAAASLS-GIFENVIGTETSPKQIEFATKL--PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA  109 (265)
Q Consensus        34 ~~~vlDvGcG~-G~~~~~l~-~~~~~v~~vD~s~~~~~~a~~~--~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~  109 (265)
                      +.+|+-+|+|. |.....++ ..+++|+++|.++.-++.+++.  ..+.......    .++.+.-   ..+|+|+....
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~----~~~~~~~---~~~DvVI~~~~  239 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNS----AEIETAV---AEADLLIGAVL  239 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCH----HHHHHHH---HTCSEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeEeeeCCH----HHHHHHH---cCCCEEEECCC
Confidence            47899999974 55444444 3567999999999888776542  1221222111    2332211   25899987654


Q ss_pred             cccC-ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          110 MHWF-DLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       110 ~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      .... .+.-+.+++.+.|+ |||+++-..+
T Consensus       240 ~~~~~~~~li~~~~~~~~~-~g~~ivdv~~  268 (361)
T 1pjc_A          240 VPGRRAPILVPASLVEQMR-TGSVIVDVAV  268 (361)
T ss_dssp             CTTSSCCCCBCHHHHTTSC-TTCEEEETTC
T ss_pred             cCCCCCCeecCHHHHhhCC-CCCEEEEEec
Confidence            3221 12223456778899 8998876444

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=86.90  E-value=0.58  Score=40.45  Aligned_cols=97  Identities=21%  Similarity=0.174  Sum_probs=56.9

Q ss_pred             CCCeEEEEcCCc-chhHHHHHh-cCCcEEEEcCCHHHHHHHHc-CC-CceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           33 NHELAWDVGTGS-GQAAASLSG-IFENVIGTETSPKQIEFATK-LP-NIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~-~~-~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      ++.+|+-+|+|. |......+. .+.+|+++|.++..++.+++ .. .+.......    .++.+.-   ..+|+|+...
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~----~~l~~~l---~~aDvVi~~~  239 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSA----YELEGAV---KRADLVIGAV  239 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCH----HHHHHHH---HHCSEEEECC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCH----HHHHHHH---cCCCEEEECC
Confidence            467899999975 554444443 45689999999998877654 21 121211111    2333321   2579998743


Q ss_pred             ccccCC-hhHHHHHHHHHhcCCCcEEEEEe
Q 024647          109 AMHWFD-LPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       109 ~~~~~~-~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      .....+ +.-+.+++.+.++ |||+++-..
T Consensus       240 ~~p~~~t~~li~~~~l~~mk-~g~~iV~va  268 (377)
T 2vhw_A          240 LVPGAKAPKLVSNSLVAHMK-PGAVLVDIA  268 (377)
T ss_dssp             CCTTSCCCCCBCHHHHTTSC-TTCEEEEGG
T ss_pred             CcCCCCCcceecHHHHhcCC-CCcEEEEEe
Confidence            222111 1123567778899 899887543

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=86.87  E-value=4  Score=32.18  Aligned_cols=93  Identities=6%  Similarity=-0.085  Sum_probs=56.4

Q ss_pred             CCCeEEEEcCCcchhHHHHHh----cCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhcc-CCCCceeEEEec
Q 024647           33 NHELAWDVGTGSGQAAASLSG----IFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNV-AAQSTVDLVTIA  107 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~Dlv~~~  107 (265)
                      ..++++=+|||  ..+..+++    .+. |+++|.++..++.++  .++.+..+++    .+.+.+. ..-...|+|++.
T Consensus         8 ~~~~viI~G~G--~~G~~la~~L~~~g~-v~vid~~~~~~~~~~--~~~~~i~gd~----~~~~~l~~a~i~~ad~vi~~   78 (234)
T 2aef_A            8 KSRHVVICGWS--ESTLECLRELRGSEV-FVLAEDENVRKKVLR--SGANFVHGDP----TRVSDLEKANVRGARAVIVD   78 (234)
T ss_dssp             --CEEEEESCC--HHHHHHHHHSTTSEE-EEEESCGGGHHHHHH--TTCEEEESCT----TCHHHHHHTTCTTCSEEEEC
T ss_pred             CCCEEEEECCC--hHHHHHHHHHHhCCe-EEEEECCHHHHHHHh--cCCeEEEcCC----CCHHHHHhcCcchhcEEEEc
Confidence            34678989885  55555544    345 999999999888777  5678888665    2222221 123468998876


Q ss_pred             cccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647          108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      ..-.  ..........+-+. |+..++.-.
T Consensus        79 ~~~d--~~n~~~~~~a~~~~-~~~~iia~~  105 (234)
T 2aef_A           79 LESD--SETIHCILGIRKID-ESVRIIAEA  105 (234)
T ss_dssp             CSCH--HHHHHHHHHHHHHC-SSSEEEEEC
T ss_pred             CCCc--HHHHHHHHHHHHHC-CCCeEEEEE
Confidence            3211  11234455667778 776666543

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=86.48  E-value=4.5  Score=34.26  Aligned_cols=99  Identities=11%  Similarity=0.033  Sum_probs=55.6

Q ss_pred             CCCCCeEEEEcC-C-cchhHHHHHhc-CCcEE-EEcCCHH---HHHHHHcCCCceEEecCCccchhhhhhccCCCCceeE
Q 024647           31 TTNHELAWDVGT-G-SGQAAASLSGI-FENVI-GTETSPK---QIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDL  103 (265)
Q Consensus        31 ~~~~~~vlDvGc-G-~G~~~~~l~~~-~~~v~-~vD~s~~---~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dl  103 (265)
                      ..++++||-+|+ | .|.++..+++. +++++ .++.++.   .++.++++.........- ....++.+.....+.+|+
T Consensus       165 ~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~-~~~~~~~~~~~~~~~~Dv  243 (357)
T 1zsy_A          165 LQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEE-LRRPEMKNFFKDMPQPRL  243 (357)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHHHTTCSEEEEHHH-HHSGGGGGTTSSSCCCSE
T ss_pred             cCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHHhcCCcEEEecCc-chHHHHHHHHhCCCCceE
Confidence            357789999997 4 48888888875 56654 4555432   355666543222222100 000122222111124899


Q ss_pred             EEeccccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647          104 VTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       104 v~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      |+-.-.     .. .+.++.++|+ ++|+++...
T Consensus       244 vid~~g-----~~-~~~~~~~~l~-~~G~iv~~G  270 (357)
T 1zsy_A          244 ALNCVG-----GK-SSTELLRQLA-RGGTMVTYG  270 (357)
T ss_dssp             EEESSC-----HH-HHHHHHTTSC-TTCEEEECC
T ss_pred             EEECCC-----cH-HHHHHHHhhC-CCCEEEEEe
Confidence            986522     22 3356789999 999998764

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=86.38  E-value=4.5  Score=29.52  Aligned_cols=97  Identities=9%  Similarity=-0.077  Sum_probs=53.6

Q ss_pred             CeEEEEcCCc-c-hhHHHHHhcCCcEEEEcCC-HHHHHHHHc--CCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647           35 ELAWDVGTGS-G-QAAASLSGIFENVIGTETS-PKQIEFATK--LPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA  109 (265)
Q Consensus        35 ~~vlDvGcG~-G-~~~~~l~~~~~~v~~vD~s-~~~~~~a~~--~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~  109 (265)
                      .+++=+|||. | .++..|.+.+.+|+++|.+ +..++....  ..++.+..+++... ..+...  .-...|+|++...
T Consensus         4 ~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~-~~l~~a--~i~~ad~vi~~~~   80 (153)
T 1id1_A            4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDS-SVLKKA--GIDRCRAILALSD   80 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSH-HHHHHH--TTTTCSEEEECSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCH-HHHHHc--ChhhCCEEEEecC
Confidence            5688888754 2 2233344567789999997 453433321  24677777665211 112222  2346899887632


Q ss_pred             cccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647          110 MHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       110 ~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      -.  .....+....+.+. |...++.-.
T Consensus        81 ~d--~~n~~~~~~a~~~~-~~~~ii~~~  105 (153)
T 1id1_A           81 ND--ADNAFVVLSAKDMS-SDVKTVLAV  105 (153)
T ss_dssp             CH--HHHHHHHHHHHHHT-SSSCEEEEC
T ss_pred             Ch--HHHHHHHHHHHHHC-CCCEEEEEE
Confidence            11  12235556667777 677666533

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=86.31  E-value=4.8  Score=33.17  Aligned_cols=89  Identities=10%  Similarity=0.048  Sum_probs=55.6

Q ss_pred             CCCeEEEEcCCc-chhHHH-HHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecccc
Q 024647           33 NHELAWDVGTGS-GQAAAS-LSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAM  110 (265)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~-l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~  110 (265)
                      .+++|+=+|+|. |..... +...+.+|+++|.++...+.+... ++.....      .++++. +  ...|+|+.....
T Consensus       154 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~-g~~~~~~------~~l~~~-l--~~aDvVi~~~p~  223 (293)
T 3d4o_A          154 HGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEM-GMEPFHI------SKAAQE-L--RDVDVCINTIPA  223 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT-TSEEEEG------GGHHHH-T--TTCSEEEECCSS
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHC-CCeecCh------hhHHHH-h--cCCCEEEECCCh
Confidence            568899999875 443333 334466899999998876655432 3333210      233333 1  358999988776


Q ss_pred             ccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647          111 HWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       111 ~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      |.++.     +....++ ||+.++-..
T Consensus       224 ~~i~~-----~~l~~mk-~~~~lin~a  244 (293)
T 3d4o_A          224 LVVTA-----NVLAEMP-SHTFVIDLA  244 (293)
T ss_dssp             CCBCH-----HHHHHSC-TTCEEEECS
T ss_pred             HHhCH-----HHHHhcC-CCCEEEEec
Confidence            65554     2445788 888776443

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=85.73  E-value=5.6  Score=34.85  Aligned_cols=38  Identities=29%  Similarity=0.350  Sum_probs=29.3

Q ss_pred             eEEEEcCCc-c-hhHHHHHhcCCcEEEEcCCHHHHHHHHc
Q 024647           36 LAWDVGTGS-G-QAAASLSGIFENVIGTETSPKQIEFATK   73 (265)
Q Consensus        36 ~vlDvGcG~-G-~~~~~l~~~~~~v~~vD~s~~~~~~a~~   73 (265)
                      +|.-||+|. | .++..|++.+.+|+++|.+++.++..++
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~   41 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQ   41 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHT
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhC
Confidence            577789886 4 3445567778899999999998887764

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=85.66  E-value=4.5  Score=35.77  Aligned_cols=39  Identities=26%  Similarity=0.198  Sum_probs=29.9

Q ss_pred             CeEEEEcCCc-c-hhHHHHHhcCCcEEEEcCCHHHHHHHHc
Q 024647           35 ELAWDVGTGS-G-QAAASLSGIFENVIGTETSPKQIEFATK   73 (265)
Q Consensus        35 ~~vlDvGcG~-G-~~~~~l~~~~~~v~~vD~s~~~~~~a~~   73 (265)
                      ++|.-||+|. | .++..|++.+.+|+++|+++..++..++
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~   43 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNS   43 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHc
Confidence            4678899986 3 3444566778899999999998887664

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=85.60  E-value=4.3  Score=35.99  Aligned_cols=89  Identities=25%  Similarity=0.250  Sum_probs=54.9

Q ss_pred             CeEEEEcCCc-c-hhHHHHHhcCCcEEEEcCCHHHHHHHHcC--------------C-----Cc-eEEecCCccchhhhh
Q 024647           35 ELAWDVGTGS-G-QAAASLSGIFENVIGTETSPKQIEFATKL--------------P-----NI-RYELTSPAMSIAELE   92 (265)
Q Consensus        35 ~~vlDvGcG~-G-~~~~~l~~~~~~v~~vD~s~~~~~~a~~~--------------~-----~~-~~~~~~~~~~~~d~~   92 (265)
                      ++|.-||+|. | .++..++..+.+|+++|.+++.++.++..              .     .. ....       .+.+
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~-------~~~~  110 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFS-------SSTK  110 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEE-------SCGG
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhc-------CCHH
Confidence            5689999997 3 45556777788999999999888765420              0     00 0111       2222


Q ss_pred             hccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEE
Q 024647           93 QNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus        93 ~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~  135 (265)
                      .+    ...|+|+.+-.-..--...++.++...++ |+.+++.
T Consensus       111 ~~----~~aDlVIeaVpe~~~~k~~v~~~l~~~~~-~~~ii~s  148 (463)
T 1zcj_A          111 EL----STVDLVVEAVFEDMNLKKKVFAELSALCK-PGAFLCT  148 (463)
T ss_dssp             GG----TTCSEEEECCCSCHHHHHHHHHHHHHHSC-TTCEEEE
T ss_pred             HH----CCCCEEEEcCCCCHHHHHHHHHHHHhhCC-CCeEEEe
Confidence            22    35799997642100002467888888888 7776654

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=85.48  E-value=0.69  Score=39.83  Aligned_cols=97  Identities=16%  Similarity=0.181  Sum_probs=55.1

Q ss_pred             CCCeEEEEcCCc-chhHHHHH-hcCCcEEEEcCCHHHHHHHHc-CC-CceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           33 NHELAWDVGTGS-GQAAASLS-GIFENVIGTETSPKQIEFATK-LP-NIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~-~~~~~v~~vD~s~~~~~~a~~-~~-~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      ++++|+-+|+|. |......+ ..+++|+++|.++..++.+.+ .. .+.......    .++++.-   ..+|+|+..-
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~----~~l~~~~---~~~DvVi~~~  237 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATE----ANIKKSV---QHADLLIGAV  237 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCH----HHHHHHH---HHCSEEEECC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCH----HHHHHHH---hCCCEEEECC
Confidence            357899999964 44333333 456799999999988776654 21 111111111    2333321   2589998764


Q ss_pred             ccccC-ChhHHHHHHHHHhcCCCcEEEEEe
Q 024647          109 AMHWF-DLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       109 ~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      ..... .+.-+.+++.+.++ +||.++...
T Consensus       238 g~~~~~~~~li~~~~l~~mk-~gg~iV~v~  266 (369)
T 2eez_A          238 LVPGAKAPKLVTRDMLSLMK-EGAVIVDVA  266 (369)
T ss_dssp             C-------CCSCHHHHTTSC-TTCEEEECC
T ss_pred             CCCccccchhHHHHHHHhhc-CCCEEEEEe
Confidence            43211 11123567788899 899887543

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=85.44  E-value=4.5  Score=33.45  Aligned_cols=89  Identities=17%  Similarity=0.173  Sum_probs=55.8

Q ss_pred             CCCeEEEEcCCc-chhHHH-HHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecccc
Q 024647           33 NHELAWDVGTGS-GQAAAS-LSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAM  110 (265)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~-l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~  110 (265)
                      .+++|+=+|+|. |..... +...+.+|+++|.++...+.+.+. ++.....      .+++++ +  ...|+|+.....
T Consensus       156 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~-g~~~~~~------~~l~~~-l--~~aDvVi~~~p~  225 (300)
T 2rir_A          156 HGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEM-GLVPFHT------DELKEH-V--KDIDICINTIPS  225 (300)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT-TCEEEEG------GGHHHH-S--TTCSEEEECCSS
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC-CCeEEch------hhHHHH-h--hCCCEEEECCCh
Confidence            568899999975 433333 334566899999999866655432 3332211      233333 1  358999998877


Q ss_pred             ccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647          111 HWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       111 ~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      |.++.     +....++ ||+.++=..
T Consensus       226 ~~i~~-----~~~~~mk-~g~~lin~a  246 (300)
T 2rir_A          226 MILNQ-----TVLSSMT-PKTLILDLA  246 (300)
T ss_dssp             CCBCH-----HHHTTSC-TTCEEEECS
T ss_pred             hhhCH-----HHHHhCC-CCCEEEEEe
Confidence            76653     2456788 888776433

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=85.38  E-value=0.53  Score=41.13  Aligned_cols=100  Identities=16%  Similarity=0.162  Sum_probs=57.9

Q ss_pred             CCCeEEEEcCCc-chhHHHHHh-cCCcEEEEcCCHHHHHHHHcCCCceEEecCCc--------c----c-------hhhh
Q 024647           33 NHELAWDVGTGS-GQAAASLSG-IFENVIGTETSPKQIEFATKLPNIRYELTSPA--------M----S-------IAEL   91 (265)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~--------~----~-------~~d~   91 (265)
                      ++.+|+-+|+|. |..+..++. .+.+|+++|.++..++.++.. +..+...+..        .    .       ..++
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~l-Ga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l  249 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSM-GAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELF  249 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHT-TCEECCC--------CCHHHHHHSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHc-CCEEEEecccccccccccchhhccHHHHHHHHHHH
Confidence            467899999986 666666555 467899999999988877654 3333211100        0    0       0012


Q ss_pred             hhccCCCCceeEEEeccccccCChhH-HHHHHHHHhcCCCcEEEEEe
Q 024647           92 EQNVAAQSTVDLVTIAQAMHWFDLPQ-FYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        92 ~~~~~~~~~~Dlv~~~~~~~~~~~~~-~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      .+.-   ...|+|+..-.+.-...+. +-+++.+.++ |||+++-..
T Consensus       250 ~e~~---~~aDvVI~~~~~pg~~ap~li~~~~l~~mk-~g~vIVdva  292 (401)
T 1x13_A          250 AAQA---KEVDIIVTTALIPGKPAPKLITREMVDSMK-AGSVIVDLA  292 (401)
T ss_dssp             HHHH---HHCSEEEECCCCTTSCCCCCBCHHHHHTSC-TTCEEEETT
T ss_pred             HHHh---CCCCEEEECCccCCCCCCeeeCHHHHhcCC-CCcEEEEEc
Confidence            2221   2479998753221111112 2357788899 899887533

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=84.77  E-value=2.3  Score=41.53  Aligned_cols=78  Identities=10%  Similarity=0.025  Sum_probs=52.5

Q ss_pred             CCeEEEEcCCcchhHHHHHhcCC-c-EEEEcCCHHHHHHHHc-CCCceEEecCCccch-----hhhhhc---cC-CCCce
Q 024647           34 HELAWDVGTGSGQAAASLSGIFE-N-VIGTETSPKQIEFATK-LPNIRYELTSPAMSI-----AELEQN---VA-AQSTV  101 (265)
Q Consensus        34 ~~~vlDvGcG~G~~~~~l~~~~~-~-v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~-----~d~~~~---~~-~~~~~  101 (265)
                      ..+++|+-||.|.++..|.+.+. + +.++|+++..++.-+. +++..+...++..+.     +|+...   .+ ..+.+
T Consensus       540 ~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~p~~~~~~~DI~~l~~~~~~~di~~~~~~~lp~~~~v  619 (1002)
T 3swr_A          540 KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPGSTVFTEDCNILLKLVMAGETTNSRGQRLPQKGDV  619 (1002)
T ss_dssp             CEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHCTTSEEECSCHHHHHHHHHHTCSBCTTCCBCCCTTTC
T ss_pred             CCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCCCCccccccHHHHhhhccchhhhhhhhhhcccCCCe
Confidence            35799999999999999998885 4 7799999999886553 567666664432110     111110   11 23579


Q ss_pred             eEEEeccccc
Q 024647          102 DLVTIAQAMH  111 (265)
Q Consensus       102 Dlv~~~~~~~  111 (265)
                      |+|+......
T Consensus       620 Dll~GGpPCQ  629 (1002)
T 3swr_A          620 EMLCGGPPCQ  629 (1002)
T ss_dssp             SEEEECCCCT
T ss_pred             eEEEEcCCCc
Confidence            9999877443

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=84.69  E-value=7.2  Score=26.45  Aligned_cols=70  Identities=20%  Similarity=0.127  Sum_probs=42.5

Q ss_pred             CCeEEEEcCCc-ch-hHHHHHhcC-CcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           34 HELAWDVGTGS-GQ-AAASLSGIF-ENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        34 ~~~vlDvGcG~-G~-~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      .++|+-+|+|. |. +...|.+.+ .+|+++|.++..++.+.. .++.....+.... .++... +  ..+|+|+...
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~-~~~~~~~~d~~~~-~~~~~~-~--~~~d~vi~~~   77 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNR-MGVATKQVDAKDE-AGLAKA-L--GGFDAVISAA   77 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHT-TTCEEEECCTTCH-HHHHHH-T--TTCSEEEECS
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHh-CCCcEEEecCCCH-HHHHHH-H--cCCCEEEECC
Confidence            35789999953 32 222344566 679999999988877763 4566666544211 122222 1  3589988764

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=83.49  E-value=2.3  Score=35.26  Aligned_cols=37  Identities=14%  Similarity=0.116  Sum_probs=29.8

Q ss_pred             CeEEEEcCCc-c-hhHHHHHhcCCcEEEEcCCHHHHHHH
Q 024647           35 ELAWDVGTGS-G-QAAASLSGIFENVIGTETSPKQIEFA   71 (265)
Q Consensus        35 ~~vlDvGcG~-G-~~~~~l~~~~~~v~~vD~s~~~~~~a   71 (265)
                      ++|.-||+|. | .++..+++.+.+|+++|.+++.++.+
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~   54 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKS   54 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHH
Confidence            5689999997 4 35666777888999999999888765

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=83.24  E-value=9.3  Score=29.39  Aligned_cols=94  Identities=15%  Similarity=0.186  Sum_probs=56.2

Q ss_pred             CeEEEEcCCcchhHHHH----HhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecccc
Q 024647           35 ELAWDVGTGSGQAAASL----SGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAM  110 (265)
Q Consensus        35 ~~vlDvGcG~G~~~~~l----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~  110 (265)
                      ++||-.|+ +|.++..+    ++.+.+|++++.++..+..... .++.+...+..    |.+. . .-+.+|.|+.....
T Consensus         1 MkilVtGa-tG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~-~~~~~~~~D~~----d~~~-~-~~~~~d~vi~~ag~   72 (224)
T 3h2s_A            1 MKIAVLGA-TGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLG-ATVATLVKEPL----VLTE-A-DLDSVDAVVDALSV   72 (224)
T ss_dssp             CEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTC-TTSEEEECCGG----GCCH-H-HHTTCSEEEECCCC
T ss_pred             CEEEEEcC-CCHHHHHHHHHHHHCCCEEEEEEecccccccccC-CCceEEecccc----cccH-h-hcccCCEEEECCcc
Confidence            35677775 45555554    4567789999999887765543 57888886552    2211 1 11358999987765


Q ss_pred             ccC-C----hhHHHHHHHHHhcCCCcEEEEE
Q 024647          111 HWF-D----LPQFYNQVKWVLKKPNGVIATW  136 (265)
Q Consensus       111 ~~~-~----~~~~l~~~~~~Lk~pgG~l~~~  136 (265)
                      .|. +    .......+.+.+++.|+.+++.
T Consensus        73 ~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~  103 (224)
T 3h2s_A           73 PWGSGRGYLHLDFATHLVSLLRNSDTLAVFI  103 (224)
T ss_dssp             CTTSSCTHHHHHHHHHHHHTCTTCCCEEEEE
T ss_pred             CCCcchhhHHHHHHHHHHHHHHHcCCcEEEE
Confidence            443 1    1234556666665245566654

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=83.09  E-value=4.2  Score=34.24  Aligned_cols=95  Identities=15%  Similarity=0.120  Sum_probs=55.3

Q ss_pred             CeEEEEcCCc-c-hhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEec------CCccchhhhhhccCCCCceeEEEe
Q 024647           35 ELAWDVGTGS-G-QAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELT------SPAMSIAELEQNVAAQSTVDLVTI  106 (265)
Q Consensus        35 ~~vlDvGcG~-G-~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~------~~~~~~~d~~~~~~~~~~~Dlv~~  106 (265)
                      ++|.=+|||. | .++..|++.+.+|+++|.+++.++..++...+.....      .......+.++.   -..+|+|+.
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~D~vi~   81 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLA---VKDADVILI   81 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHH---HTTCSEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHH---HhcCCEEEE
Confidence            5789999986 3 4445566777889999999988776654212221110      000000222221   125899987


Q ss_pred             ccccccCChhHHHHHHHHHhcCCCcEEEE
Q 024647          107 AQAMHWFDLPQFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus       107 ~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~  135 (265)
                      .-.-+  ....+++.+...++ ++..++.
T Consensus        82 ~v~~~--~~~~~~~~l~~~l~-~~~~vv~  107 (359)
T 1bg6_A           82 VVPAI--HHASIAANIASYIS-EGQLIIL  107 (359)
T ss_dssp             CSCGG--GHHHHHHHHGGGCC-TTCEEEE
T ss_pred             eCCch--HHHHHHHHHHHhCC-CCCEEEE
Confidence            64322  12567777878888 7765554

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=83.02  E-value=7.9  Score=31.64  Aligned_cols=101  Identities=12%  Similarity=0.066  Sum_probs=59.6

Q ss_pred             CeEEEEcCCc-c-hhHHHHHhcCC---cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647           35 ELAWDVGTGS-G-QAAASLSGIFE---NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA  109 (265)
Q Consensus        35 ~~vlDvGcG~-G-~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~  109 (265)
                      ++|.=||||. | .+...|.+.+.   +|+..|.+++.++.+.+.-++....        +..+. .  ...|+|+..--
T Consensus         4 ~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~--------~~~~~-~--~~aDvVilav~   72 (280)
T 3tri_A            4 SNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQ--------DNRQG-A--LNADVVVLAVK   72 (280)
T ss_dssp             SCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEES--------CHHHH-H--SSCSEEEECSC
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeC--------ChHHH-H--hcCCeEEEEeC
Confidence            5688899986 3 35555666665   7999999999888776533444322        22221 1  24699997642


Q ss_pred             cccCChhHHHHHHHHH-hcCCCcEEEEEecCCCCCChHHHHhh
Q 024647          110 MHWFDLPQFYNQVKWV-LKKPNGVIATWCYTVPEVNVSVDAVF  151 (265)
Q Consensus       110 ~~~~~~~~~l~~~~~~-Lk~pgG~l~~~~~~~~~~~~~~~~~~  151 (265)
                      -  -....+++++... ++ ++-.+ +.....-. ...+.+.+
T Consensus        73 p--~~~~~vl~~l~~~~l~-~~~ii-iS~~agi~-~~~l~~~l  110 (280)
T 3tri_A           73 P--HQIKMVCEELKDILSE-TKILV-ISLAVGVT-TPLIEKWL  110 (280)
T ss_dssp             G--GGHHHHHHHHHHHHHT-TTCEE-EECCTTCC-HHHHHHHH
T ss_pred             H--HHHHHHHHHHHhhccC-CCeEE-EEecCCCC-HHHHHHHc
Confidence            1  1335678888877 77 55444 43332222 24455544

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=82.54  E-value=2.8  Score=29.84  Aligned_cols=94  Identities=12%  Similarity=0.079  Sum_probs=49.9

Q ss_pred             CeEEEEcCCc-ch-hHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecccccc
Q 024647           35 ELAWDVGTGS-GQ-AAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHW  112 (265)
Q Consensus        35 ~~vlDvGcG~-G~-~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~  112 (265)
                      ++|+-+|||. |. +...|.+.+.+|+++|.++..++.++.. .......+... ...+...  ....+|+|+....-..
T Consensus         7 ~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~-~~~~~~~d~~~-~~~l~~~--~~~~~d~vi~~~~~~~   82 (144)
T 2hmt_A            7 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASY-ATHAVIANATE-ENELLSL--GIRNFEYVIVAIGANI   82 (144)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTT-CSEEEECCTTC-HHHHHTT--TGGGCSEEEECCCSCH
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh-CCEEEEeCCCC-HHHHHhc--CCCCCCEEEECCCCch
Confidence            5689999854 32 2223345567899999999877765542 34445444311 0112221  1246899987643210


Q ss_pred             CChhHHHHHHHHHhcCCCcEEEE
Q 024647          113 FDLPQFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus       113 ~~~~~~l~~~~~~Lk~pgG~l~~  135 (265)
                       +....+....+.+. +. .++.
T Consensus        83 -~~~~~~~~~~~~~~-~~-~ii~  102 (144)
T 2hmt_A           83 -QASTLTTLLLKELD-IP-NIWV  102 (144)
T ss_dssp             -HHHHHHHHHHHHTT-CS-EEEE
T ss_pred             -HHHHHHHHHHHHcC-CC-eEEE
Confidence             11223445555566 65 5444

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=82.53  E-value=5.7  Score=32.60  Aligned_cols=95  Identities=15%  Similarity=0.150  Sum_probs=54.6

Q ss_pred             CeEEEEcCCc-c-hhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEec------CCccchhhhhhccCCCCceeEEEe
Q 024647           35 ELAWDVGTGS-G-QAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELT------SPAMSIAELEQNVAAQSTVDLVTI  106 (265)
Q Consensus        35 ~~vlDvGcG~-G-~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~------~~~~~~~d~~~~~~~~~~~Dlv~~  106 (265)
                      ++|.=||+|. | .++..|++.+.+|+.+|.+++.++..++. ++.....      ....  .+..+....-..+|+|+.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~-g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~vi~   80 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKN-GLIADFNGEEVVANLPI--FSPEEIDHQNEQVDLIIA   80 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH-CEEEEETTEEEEECCCE--ECGGGCCTTSCCCSEEEE
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhC-CEEEEeCCCeeEeccee--ecchhhcccCCCCCEEEE
Confidence            4688999986 3 44455667778999999999888776542 2222210      0100  011111101126899997


Q ss_pred             ccccccCChhHHHHHHHHHhcCCCcEEEE
Q 024647          107 AQAMHWFDLPQFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus       107 ~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~  135 (265)
                      .-.-+  ....+++++...++ ++..++.
T Consensus        81 ~v~~~--~~~~v~~~l~~~l~-~~~~iv~  106 (316)
T 2ew2_A           81 LTKAQ--QLDAMFKAIQPMIT-EKTYVLC  106 (316)
T ss_dssp             CSCHH--HHHHHHHHHGGGCC-TTCEEEE
T ss_pred             Eeccc--cHHHHHHHHHHhcC-CCCEEEE
Confidence            64321  23456777777787 6766554

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=82.44  E-value=1.6  Score=41.63  Aligned_cols=98  Identities=18%  Similarity=0.089  Sum_probs=59.2

Q ss_pred             CCCCeEEEEcC-C-cchhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           32 TNHELAWDVGT-G-SGQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        32 ~~~~~vlDvGc-G-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      .++++||-.|+ | .|..+..+++. +++|++++.++. .+.++ +..-......-......+... .....+|+|+-..
T Consensus       344 ~~G~~VLI~gaaGgvG~~aiqlAk~~Ga~V~~t~~~~k-~~~l~-lga~~v~~~~~~~~~~~i~~~-t~g~GvDvVld~~  420 (795)
T 3slk_A          344 RPGESLLVHSAAGGVGMAAIQLARHLGAEVYATASEDK-WQAVE-LSREHLASSRTCDFEQQFLGA-TGGRGVDVVLNSL  420 (795)
T ss_dssp             CTTCCEEEESTTBHHHHHHHHHHHHTTCCEEEECCGGG-GGGSC-SCGGGEECSSSSTHHHHHHHH-SCSSCCSEEEECC
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeChHH-hhhhh-cChhheeecCChhHHHHHHHH-cCCCCeEEEEECC
Confidence            46788999995 4 48888888875 678999986552 22222 221122221110011122222 2345799999753


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      .      ...+....+.|+ |+|+++.....
T Consensus       421 g------g~~~~~~l~~l~-~~Gr~v~iG~~  444 (795)
T 3slk_A          421 A------GEFADASLRMLP-RGGRFLELGKT  444 (795)
T ss_dssp             C------TTTTHHHHTSCT-TCEEEEECCST
T ss_pred             C------cHHHHHHHHHhc-CCCEEEEeccc
Confidence            2      246688899999 99999876543

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=82.33  E-value=2.1  Score=37.08  Aligned_cols=40  Identities=18%  Similarity=0.166  Sum_probs=30.5

Q ss_pred             CCCeEEEEcCCcchhHHHHHhc---C----C--cEEEEcCCHHHHHHHH
Q 024647           33 NHELAWDVGTGSGQAAASLSGI---F----E--NVIGTETSPKQIEFAT   72 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~---~----~--~v~~vD~s~~~~~~a~   72 (265)
                      .+-.|+|+|+|+|.+..-+.+.   .    .  ++..||+|+...+.-+
T Consensus        80 ~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~  128 (387)
T 1zkd_A           80 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQ  128 (387)
T ss_dssp             SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHH
T ss_pred             CCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHH
Confidence            3456999999999998877643   1    2  5999999998876433

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=81.95  E-value=2  Score=37.12  Aligned_cols=100  Identities=14%  Similarity=0.140  Sum_probs=56.9

Q ss_pred             CCCeEEEEcCCc-chhHHHHHh-cCCcEEEEcCCHHHHHHHHcCCCceEEecCCc---------------------cchh
Q 024647           33 NHELAWDVGTGS-GQAAASLSG-IFENVIGTETSPKQIEFATKLPNIRYELTSPA---------------------MSIA   89 (265)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~---------------------~~~~   89 (265)
                      ++.+|+-+|+|. |.....+++ .+.+|+++|.++..++.++.+ +..+...+..                     ....
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~-Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~  249 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESL-GGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  249 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHT-TCEECCC-----------------------CCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-CCeEEeecccccccccccccchhhcCHHHHhhhHH
Confidence            568899999986 666666555 456899999998877777653 2222200000                     0001


Q ss_pred             hhhhccCCCCceeEEEeccccccCChhH-HHHHHHHHhcCCCcEEEEEe
Q 024647           90 ELEQNVAAQSTVDLVTIAQAMHWFDLPQ-FYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        90 d~~~~~~~~~~~Dlv~~~~~~~~~~~~~-~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      .+.+.-   ..+|+|+....+.-...+. +.+++.+.++ |||+++-..
T Consensus       250 ~l~~~~---~~aDvVi~~~~~pg~~~~~li~~~~l~~mk-~g~vivdva  294 (384)
T 1l7d_A          250 AVLKEL---VKTDIAITTALIPGKPAPVLITEEMVTKMK-PGSVIIDLA  294 (384)
T ss_dssp             HHHHHH---TTCSEEEECCCCTTSCCCCCSCHHHHTTSC-TTCEEEETT
T ss_pred             HHHHHh---CCCCEEEECCccCCCCCCeeeCHHHHhcCC-CCCEEEEEe
Confidence            122221   2589999543211111112 2367788899 899887543

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=81.49  E-value=1.2  Score=39.11  Aligned_cols=38  Identities=18%  Similarity=0.197  Sum_probs=30.1

Q ss_pred             CCeEEEEcCCcchhHHHHHhcC-------CcEEEEcCCHHHHHHH
Q 024647           34 HELAWDVGTGSGQAAASLSGIF-------ENVIGTETSPKQIEFA   71 (265)
Q Consensus        34 ~~~vlDvGcG~G~~~~~l~~~~-------~~v~~vD~s~~~~~~a   71 (265)
                      +..++|+|+|+|.+..-+.+..       .++..||+|+.+.+.-
T Consensus       138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q  182 (432)
T 4f3n_A          138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQ  182 (432)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHH
T ss_pred             CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHH
Confidence            4689999999999988876421       2699999999887543

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=81.11  E-value=1.5  Score=38.90  Aligned_cols=71  Identities=13%  Similarity=0.142  Sum_probs=44.3

Q ss_pred             CCeEEEEcCCc-ch-hHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647           34 HELAWDVGTGS-GQ-AAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIA  107 (265)
Q Consensus        34 ~~~vlDvGcG~-G~-~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~  107 (265)
                      .++|+=+|||. |. ++..|.+.+.+|+.+|.+++.++.+...-++..+.+++... .-+++.  .-+..|++++.
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~-~~L~~A--gi~~ad~~ia~   75 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHP-DVLHEA--GAQDADMLVAV   75 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCH-HHHHHH--TTTTCSEEEEC
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCH-HHHHhc--CCCcCCEEEEE
Confidence            46788888875 32 22333445567999999999998876534677777665211 112222  23467888863

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=81.03  E-value=5.5  Score=32.04  Aligned_cols=87  Identities=9%  Similarity=0.051  Sum_probs=52.7

Q ss_pred             CeEEEEcCCc-c-hhHHHHHhcCCc-EEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccccc
Q 024647           35 ELAWDVGTGS-G-QAAASLSGIFEN-VIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMH  111 (265)
Q Consensus        35 ~~vlDvGcG~-G-~~~~~l~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~  111 (265)
                      ++|.=||||. | .++..+++.+.+ |.++|.+++.++.+.+.-++...        .+.++. .  ...|+|+..-.-.
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~--------~~~~~~-~--~~~Dvvi~av~~~   79 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYT--------TDLAEV-N--PYAKLYIVSLKDS   79 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEE--------SCGGGS-C--SCCSEEEECCCHH
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCcee--------CCHHHH-h--cCCCEEEEecCHH
Confidence            5788999985 3 344456666777 89999999988766542233322        223332 1  2579999864322


Q ss_pred             cCChhHHHHHHHHHhcCCCcEEEE
Q 024647          112 WFDLPQFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus       112 ~~~~~~~l~~~~~~Lk~pgG~l~~  135 (265)
                        ....+++++...++ +|..++-
T Consensus        80 --~~~~v~~~l~~~~~-~~~ivv~  100 (266)
T 3d1l_A           80 --AFAELLQGIVEGKR-EEALMVH  100 (266)
T ss_dssp             --HHHHHHHHHHTTCC-TTCEEEE
T ss_pred             --HHHHHHHHHHhhcC-CCcEEEE
Confidence              12456666666677 6655543

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=81.02  E-value=4.6  Score=32.36  Aligned_cols=103  Identities=15%  Similarity=0.075  Sum_probs=59.3

Q ss_pred             CCCeEEEEcCCcc---hhHHHHHhcCCcEEEEcCCHHHHHHHHc--CCCceEEecCCccchhhhhhc----cCCCCceeE
Q 024647           33 NHELAWDVGTGSG---QAAASLSGIFENVIGTETSPKQIEFATK--LPNIRYELTSPAMSIAELEQN----VAAQSTVDL  103 (265)
Q Consensus        33 ~~~~vlDvGcG~G---~~~~~l~~~~~~v~~vD~s~~~~~~a~~--~~~~~~~~~~~~~~~~d~~~~----~~~~~~~Dl  103 (265)
                      .++++|-.|++.|   .++..|++.+++|+.+|.++..++...+  ..++.+...+.... .+++.+    ...-+.+|+
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~-~~v~~~~~~~~~~~g~id~   85 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFGPRVHALRSDIADL-NEIAVLGAAAGQTLGAIDL   85 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCH-HHHHHHHHHHHHHHSSEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCH-HHHHHHHHHHHHHhCCCCE
Confidence            3467888887765   3444566778899999999987766543  13566666555221 111111    011246899


Q ss_pred             EEeccccccC------Chh--------------HHHHHHHHHhcCCCcEEEEEe
Q 024647          104 VTIAQAMHWF------DLP--------------QFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       104 v~~~~~~~~~------~~~--------------~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      ++.+-.+...      +.+              .+.+.+...++ .+|.++...
T Consensus        86 lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~-~~g~iv~is  138 (255)
T 4eso_A           86 LHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIR-EGGSIVFTS  138 (255)
T ss_dssp             EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEE-EEEEEEEEC
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHh-cCCEEEEEC
Confidence            8876544321      111              23445555667 688877643

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=80.82  E-value=13  Score=32.60  Aligned_cols=39  Identities=13%  Similarity=0.191  Sum_probs=29.0

Q ss_pred             CCeEEEEcCCc-chh-HHHHHhcCCcEEEEcCCHHHHHHHHc
Q 024647           34 HELAWDVGTGS-GQA-AASLSGIFENVIGTETSPKQIEFATK   73 (265)
Q Consensus        34 ~~~vlDvGcG~-G~~-~~~l~~~~~~v~~vD~s~~~~~~a~~   73 (265)
                      -++|--||+|. |.. +..|++ +.+|+++|++++.++..++
T Consensus        36 ~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~   76 (432)
T 3pid_A           36 FMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQ   76 (432)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHT
T ss_pred             CCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhc
Confidence            35788899986 432 333455 7789999999999988765

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=80.60  E-value=8.9  Score=31.90  Aligned_cols=108  Identities=17%  Similarity=0.146  Sum_probs=62.4

Q ss_pred             CCCeEEEEcCCc-c-hhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEe------cCCccchhhhhhccCCCCceeEE
Q 024647           33 NHELAWDVGTGS-G-QAAASLSGIFENVIGTETSPKQIEFATKLPNIRYEL------TSPAMSIAELEQNVAAQSTVDLV  104 (265)
Q Consensus        33 ~~~~vlDvGcG~-G-~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~------~~~~~~~~d~~~~~~~~~~~Dlv  104 (265)
                      ..++|.-+|+|. | .++..|++.+.+|+.+ .+++.++..++. +.....      ...... .+.+..    ..+|+|
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~-g~~~~~~~~~~~~~~~~~-~~~~~~----~~~D~v   90 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEAT-GLRLETQSFDEQVKVSAS-SDPSAV----QGADLV   90 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHH-CEEEECSSCEEEECCEEE-SCGGGG----TTCSEE
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhC-CeEEEcCCCcEEEeeeee-CCHHHc----CCCCEE
Confidence            457899999996 3 5556677788899999 888888776541 121111      011000 122221    368999


Q ss_pred             EeccccccCChhHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHhh
Q 024647          105 TIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVF  151 (265)
Q Consensus       105 ~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~  151 (265)
                      +..---+  +...+++++...++ ++..++....+- .....+.+.+
T Consensus        91 ilavk~~--~~~~~l~~l~~~l~-~~~~iv~~~nGi-~~~~~l~~~~  133 (318)
T 3hwr_A           91 LFCVKST--DTQSAALAMKPALA-KSALVLSLQNGV-ENADTLRSLL  133 (318)
T ss_dssp             EECCCGG--GHHHHHHHHTTTSC-TTCEEEEECSSS-SHHHHHHHHC
T ss_pred             EEEcccc--cHHHHHHHHHHhcC-CCCEEEEeCCCC-CcHHHHHHHc
Confidence            9864322  44677888888888 776655433322 2124555665

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=80.43  E-value=4  Score=33.40  Aligned_cols=84  Identities=12%  Similarity=0.200  Sum_probs=51.9

Q ss_pred             CeEEEEcC-Cc-c-hhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccccc
Q 024647           35 ELAWDVGT-GS-G-QAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMH  111 (265)
Q Consensus        35 ~~vlDvGc-G~-G-~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~  111 (265)
                      ++|.=||| |. | .++..|.+.+.+|+++|.++..++.+.+. ++..         .+..+.   -...|+|+..-.-.
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~-g~~~---------~~~~~~---~~~aDvVi~av~~~   78 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGM-GIPL---------TDGDGW---IDEADVVVLALPDN   78 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHT-TCCC---------CCSSGG---GGTCSEEEECSCHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhc-CCCc---------CCHHHH---hcCCCEEEEcCCch
Confidence            47899999 86 3 44556677777899999999888776642 2211         111111   12579999764222


Q ss_pred             cCChhHHHHHHHHHhcCCCcEEE
Q 024647          112 WFDLPQFYNQVKWVLKKPNGVIA  134 (265)
Q Consensus       112 ~~~~~~~l~~~~~~Lk~pgG~l~  134 (265)
                      .  ...+++++...++ ++..++
T Consensus        79 ~--~~~v~~~l~~~l~-~~~ivv   98 (286)
T 3c24_A           79 I--IEKVAEDIVPRVR-PGTIVL   98 (286)
T ss_dssp             H--HHHHHHHHGGGSC-TTCEEE
T ss_pred             H--HHHHHHHHHHhCC-CCCEEE
Confidence            1  3456666666677 666544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	265
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	6e-08
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	5e-07
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	2e-04
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	8e-04
d1nkva_	245	c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric	0.001
d1i9ga_	264	c.66.1.13 (A:) Probable methyltransferase Rv2118c	0.003
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	0.004

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 50.0 bits (118), Expect = 6e-08
 Identities = 33/210 (15%), Positives = 68/210 (32%), Gaps = 18/210 (8%)

Query: 39  DVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQ 98
           D+G G+G  A + S   +  IG + + + +E A+     +                    
Sbjct: 22  DIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDD 81

Query: 99  STVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQPFYTVD 158
           S   +     A H+ D+ +   +V  VL K +G      +  PE     D V   F    
Sbjct: 82  SFDIITCRYAAHHFSDVRKAVREVARVL-KQDGRFLLVDHYAPE-----DPVLDEFVNHL 135

Query: 159 SDPFWEPQRKLVDNKYMTIDFPFEPVDGADSTGPFDRFVIEK---TMDLEGYFSYIRSWS 215
           +        +L D  ++      E      +        I+K    +  + +     + +
Sbjct: 136 N--------RLRDPSHVRESSLSEWQAMFSANQ-LAYQDIQKWNLPIQYDSWIKRGGTPA 186

Query: 216 AYQTAKDKGVELLTENVIENFRRAWNEDGQ 245
             +      +   ++   + F    N++GQ
Sbjct: 187 DREKQIITHLNHASDEARDTFCITLNQNGQ 216

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 46.9 bits (110), Expect = 5e-07
 Identities = 32/209 (15%), Positives = 64/209 (30%), Gaps = 13/209 (6%)

Query: 39  DVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQ 98
           DV TG G  A + +   + V+  + +   ++ A              +     +     +
Sbjct: 21  DVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDE 80

Query: 99  STVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQPFYTVD 158
               +     A H+ +   F ++   VL K  G +     + PE +     VF  +   +
Sbjct: 81  RFHIVTCRIAAHHFPNPASFVSEAYRVL-KKGGQLLLVDNSAPENDAF--DVFYNYVEKE 137

Query: 159 SDPFWEPQRKLVDNKYMTIDFPFEPVDGADSTGPFDRFVIEKTMDLEGYFSYIRSWSAYQ 218
            D       K  D   M  +  FE           +     KT   E +   +   +  +
Sbjct: 138 RDYSHHRAWKKSDWLKMLEEAGFELE---------ELHCFHKTFIFEDWCDRMNVTTEKK 188

Query: 219 TAKDKGVELLTENVIENFRRAWNEDGQSR 247
                 ++       + F+    EDG+  
Sbjct: 189 QELSDFIKSKPTEYYQKFKIVV-EDGRVY 216

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 32/212 (15%), Positives = 65/212 (30%), Gaps = 32/212 (15%)

Query: 12  YAETRPNYPEELFKFITSKTTNHELAWDVGTGSGQ--AAASLSGIFENVIGTETSPKQIE 69
           Y E  PN+  ++++    K    +   D+G+G G     A+L        G E      +
Sbjct: 197 YGELLPNFLSDVYQQCQLK--KGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASD 254

Query: 70  FATKL------------PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQ 117
                              +     S   S  +  +        D++ +   +   DL +
Sbjct: 255 LTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNK 314

Query: 118 FYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQPFYTVDSDPFWEPQRKLVDNKYMTI 177
              ++     K    I           +S+ ++    Y ++         +L   +Y   
Sbjct: 315 KVEKILQTA-KVGCKI-----------ISLKSLRSLTYQINFYNVENIFNRLKVQRY--- 359

Query: 178 DFPFEPVDGADSTGPFDRFVIEKTMDLEGYFS 209
           D   + V    S G +    + + +D E  FS
Sbjct: 360 DLKEDSVSWTHSGGEYYISTVMEDVD-ESLFS 390

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 37.7 bits (87), Expect = 8e-04
 Identities = 14/115 (12%), Positives = 34/115 (29%), Gaps = 9/115 (7%)

Query: 38  WDVGTGSGQAAASLS---GIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQN 94
            +VG GSG  ++ +         +   E     ++ A    +  +       +      +
Sbjct: 90  LEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLS-EFYDIGNVRTSRSDIAD 148

Query: 95  VAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDA 149
             +    D V       W  + +  + +     KP  V   +     +   +V +
Sbjct: 149 FISDQMYDAVIADIPDPWNHVQKIASMM-----KPGSVATFYLPNFDQSEKTVLS 198

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 21/153 (13%), Positives = 38/153 (24%), Gaps = 4/153 (2%)

Query: 39  DVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAA 97
           D+G+GSG+   + +        G + S      A +                +    VA 
Sbjct: 39  DLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVAN 98

Query: 98  QSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNG--VIATWCYTVPEVNVSVDAVFQPFY 155
           +       +               +   L KP G  +I    +        +        
Sbjct: 99  EKCDVAACVGATWIAGGFAGAEELLAQSL-KPGGIMLIGEPYWRQLPATEEIAQACGVSS 157

Query: 156 TVDSDPFWEPQRKLVDNKYMTIDFPFEPVDGAD 188
           T D            D  Y  ++      +G D
Sbjct: 158 TSDFLTLPGLVGAFDDLGYDVVEMVLADQEGWD 190

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 36.1 bits (83), Expect = 0.003
 Identities = 25/154 (16%), Positives = 52/154 (33%), Gaps = 9/154 (5%)

Query: 1   MAELFIKQAKQYAETRPNYPEELFKFI-TSKTTNHELAWDVGTGSGQAAASLSGIFEN-- 57
           +   ++    +    +  YP++  + +            + G GSG    SL        
Sbjct: 65  LLVDYVMSMPR--GPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAG 122

Query: 58  -VIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLP 116
            VI  E      E A +  N+      P  +   +  ++A     D       +      
Sbjct: 123 QVISYEQRADHAEHARR--NVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVLDMLAPW 180

Query: 117 QFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAV 150
           +  + V  +L    GV+  +  TV +++  V+A+
Sbjct: 181 EVLDAVSRLLV-AGGVLMVYVATVTQLSRIVEAL 213

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (82), Expect = 0.004
 Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 14/125 (11%)

Query: 38  WDVGTGSGQAAASLSGIFEN---VIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQN 94
            + G+GSG  +  LS    +   VI  E      + A K  N ++   S  +S  E   +
Sbjct: 103 LEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKK--NYKHWRDSWKLSHVEEWPD 160

Query: 95  VAAQSTVDLVTIAQAM-------HWFDLPQFYNQVKWVLK--KPNGVIATWCYTVPEVNV 145
                  D+    + +          D+   +  +       K  GV A +   + +V  
Sbjct: 161 NVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVVNITQVIE 220

Query: 146 SVDAV 150
            +D +
Sbjct: 221 LLDGI 225

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	265
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.94
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.92
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.88
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.87
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.86
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.85
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.84
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.81
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.8
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.8
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.78
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.77
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.76
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.76
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.74
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.73
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.73
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.72
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.7
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.68
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.66
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.65
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.65
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.64
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.63
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.63
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.62
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.61
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.6
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.6
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.6
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.58
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.56
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.55
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.55
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.54
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.54
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.51
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.49
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.49
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.49
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.47
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.45
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.45
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.43
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.43
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.42
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.41
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.34
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.33
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.29
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.29
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.27
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.26
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.25
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.24
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.19
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.17
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.16
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.13
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	99.11
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.09
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.07
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.07
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.05
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	99.05
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.02
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.0
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.97
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.94
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.9
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.9
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.9
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.86
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.86
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.85
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.82
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.81
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.81
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.8
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.8
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.78
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.67
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.64
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.61
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.59
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.48
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.46
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.42
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.4
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.38
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.26
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.16
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	98.11
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.0
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.95
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.92
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.9
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.84
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.81
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	97.78
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.71
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	97.6
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.6
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	97.57
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.53
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.5
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	97.46
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	97.39
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	97.32
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	97.3
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.23
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.19
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	97.16
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	97.14
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.11
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	97.1
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	96.88
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	96.87
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.75
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	96.68
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	96.66
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	96.65
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.59
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	96.32
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	96.19
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.1
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	96.07
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	96.01
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	95.94
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	95.68
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	95.33
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	94.96
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	94.53
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	94.01
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	93.58
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	92.83
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	92.37
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	92.21
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	91.53
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	91.23
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	91.14
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	90.33
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	90.21
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	89.84
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	89.58
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	89.29
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	89.15
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	86.86
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	86.74
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	86.13
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	85.33
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	84.81
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	84.24
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	83.77
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	83.65
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	83.42
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	83.2
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	81.74
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	81.68
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	81.28
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	80.96
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	80.03

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.94  E-value=2.2e-26  Score=187.50  Aligned_cols=208  Identities=18%  Similarity=0.204  Sum_probs=132.7

Q ss_pred             CCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhccCCCCceeEE
Q 024647           31 TTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQNVAAQSTVDLV  104 (265)
Q Consensus        31 ~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv  104 (265)
                      .+++++|||||||+|.++..+++++++|+|+|+|+.|++.|++      .+++.+.+       +|++++++++++||+|
T Consensus        13 l~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~-------~d~~~l~~~~~~fD~v   85 (231)
T d1vl5a_          13 LKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQ-------GDAEQMPFTDERFHIV   85 (231)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEE-------CCC-CCCSCTTCEEEE
T ss_pred             CCCcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhcccccccccccccc-------cccccccccccccccc
Confidence            4677899999999999999999999999999999999998864      36788888       6678888889999999


Q ss_pred             EeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHhh---cccccCCCCCCcchhhhhhhhccCCCCCC
Q 024647          105 TIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVF---QPFYTVDSDPFWEPQRKLVDNKYMTIDFP  180 (265)
Q Consensus       105 ~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (265)
                      +|..++||+ |+.++++++.++|| |||.+++.++..+. ...+...+   ...........+.+.  .+...++..|  
T Consensus        86 ~~~~~l~~~~d~~~~l~~~~r~Lk-pgG~l~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~aG--  159 (231)
T d1vl5a_          86 TCRIAAHHFPNPASFVSEAYRVLK-KGGQLLLVDNSAPE-NDAFDVFYNYVEKERDYSHHRAWKKS--DWLKMLEEAG--  159 (231)
T ss_dssp             EEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEEEBCS-SHHHHHHHHHHHHHHCTTCCCCCBHH--HHHHHHHHHT--
T ss_pred             cccccccccCCHHHHHHHHHHhcC-CCcEEEEEeCCCCC-CHHHHHHHHHHHhhcccCcccCCCHH--HHHHHHHHCC--
Confidence            999999999 99999999999999 99999986665433 23333332   222211112222221  1222333333  


Q ss_pred             CCCCCCCCCCCCCccceeeeccCHHHHHHHHHhhhHHH-HHHHhCCccchHHHHHHHHHHhccCCCccEEEEEeeEEEEe
Q 024647          181 FEPVDGADSTGPFDRFVIEKTMDLEGYFSYIRSWSAYQ-TAKDKGVELLTENVIENFRRAWNEDGQSRKVVRFPIYLRIG  259 (265)
Q Consensus       181 f~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~-~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a  259 (265)
                      |+.++         ...+......+.+...+++..... ...+.... ...++.+.+...+.+ + ......+.+.+++|
T Consensus       160 f~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d-~-~~~~~~~~~~~~~a  227 (231)
T d1vl5a_         160 FELEE---------LHCFHKTFIFEDWCDRMNVTTEKKQELSDFIKS-KPTEYYQKFKIVVED-G-RVYSFRGESILMKA  227 (231)
T ss_dssp             CEEEE---------EEEEEEEEEHHHHHHHTTCCHHHHHHHHHHHHT-SCHHHHHHTTCEEET-T-EEEEEEEEEEEEEE
T ss_pred             CEEEE---------EEEeecCCchHHHHHHhcCCHHHHHHHHHHHHh-hHHHHHHHHHHHhhc-C-CccceeeeEEEEEE
Confidence            32221         122344556667766665533222 11111111 112233333333333 2 23556788899999


Q ss_pred             ecCC
Q 024647          260 KVGN  263 (265)
Q Consensus       260 rk~~  263 (265)
                      |||.
T Consensus       228 rKP~  231 (231)
T d1vl5a_         228 RKPT  231 (231)
T ss_dssp             ECCC
T ss_pred             EcCC
Confidence            9983

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.92  E-value=2e-25  Score=182.51  Aligned_cols=119  Identities=23%  Similarity=0.385  Sum_probs=99.2

Q ss_pred             HHHHHhh--CCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhcc
Q 024647           24 FKFITSK--TTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQNV   95 (265)
Q Consensus        24 ~~~l~~~--~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~~   95 (265)
                      .+.+.+.  .+++++|||||||+|.++..+++++++|+|||+|+.|++.|++      .+++.+.+       +|+++++
T Consensus         5 ~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~-------~d~~~~~   77 (234)
T d1xxla_           5 LGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQ-------GTAESLP   77 (234)
T ss_dssp             HHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEE-------CBTTBCC
T ss_pred             HHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhcccccccccccc-------ccccccc
Confidence            3444443  4688999999999999999999999999999999999998875      35788888       7778898


Q ss_pred             CCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHhh
Q 024647           96 AAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVF  151 (265)
Q Consensus        96 ~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~  151 (265)
                      +++++||+|+|..++||+ |+..+++++.++|| |||.+++..+..+. .+.+..++
T Consensus        78 ~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~Lk-pgG~~~~~~~~~~~-~~~~~~~~  132 (234)
T d1xxla_          78 FPDDSFDIITCRYAAHHFSDVRKAVREVARVLK-QDGRFLLVDHYAPE-DPVLDEFV  132 (234)
T ss_dssp             SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEECBCS-SHHHHHHH
T ss_pred             ccccccceeeeeceeecccCHHHHHHHHHHeeC-CCcEEEEEEcCCCC-CHHHHHHH
Confidence            999999999999999999 99999999999999 99999886654333 34444433

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.88  E-value=6.8e-23  Score=167.77  Aligned_cols=129  Identities=16%  Similarity=0.182  Sum_probs=105.0

Q ss_pred             hHHHHHHHHHhhhCCCC----cHHHHHH-HHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCc
Q 024647            3 ELFIKQAKQYAETRPNY----PEELFKF-ITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNI   77 (265)
Q Consensus         3 ~~f~~~a~~Y~~~rp~y----~~~l~~~-l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~   77 (265)
                      +.|+..|..|+.....-    ..+.+.. +..+.+++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.|++....
T Consensus         7 ~~yd~~a~~Yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~   86 (246)
T d2avna1           7 EFYDRIARAYDSMYETPKWKLYHRLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVK   86 (246)
T ss_dssp             HHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHHHCCSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcCCCCEEEEECCCCchhcccccccceEEEEeeccccccccccccccc
Confidence            57899999999755432    2222322 344567778999999999999999999999999999999999999875444


Q ss_pred             eEEecCCccchhhhhhccCCCCceeEEEec-cccccC-ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           78 RYELTSPAMSIAELEQNVAAQSTVDLVTIA-QAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        78 ~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~-~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      .++.       ++++++++++++||+|++. .++||+ |+..+++++.++|| |||.+++..++
T Consensus        87 ~~~~-------~~~~~l~~~~~~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk-~gG~~ii~~~~  142 (246)
T d2avna1          87 NVVE-------AKAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLV-PDGLLIATVDN  142 (246)
T ss_dssp             CEEE-------CCTTSCCSCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEE-EEEEEEEEEEB
T ss_pred             cccc-------ccccccccccccccceeeecchhhhhhhHHHHHHHHHhhcC-cCcEEEEEECC
Confidence            5555       6678888889999999985 588988 99999999999999 99999986653

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.87  E-value=9.3e-22  Score=164.83  Aligned_cols=100  Identities=21%  Similarity=0.204  Sum_probs=88.6

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhc-CCcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCCCCceeE
Q 024647           32 TNHELAWDVGTGSGQAAASLSGI-FENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAAQSTVDL  103 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dl  103 (265)
                      +++.+|||||||+|.++..|+++ +.+|+|+|+|+.|++.|++.       .++.+..       +|++++++++++||+
T Consensus        66 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~-------~d~~~l~~~~~sfD~  138 (282)
T d2o57a1          66 QRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKY-------GSFLEIPCEDNSYDF  138 (282)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEE-------CCTTSCSSCTTCEEE
T ss_pred             CCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccc-------cccccccccccccch
Confidence            57789999999999999999986 56899999999999988752       4688888       667888889999999


Q ss_pred             EEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          104 VTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       104 v~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      |++..++|++ |+..+++++.++|| |||.|++.++.
T Consensus       139 V~~~~~l~h~~d~~~~l~~~~~~Lk-pgG~l~~~~~~  174 (282)
T d2o57a1         139 IWSQDAFLHSPDKLKVFQECARVLK-PRGVMAITDPM  174 (282)
T ss_dssp             EEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEEE
T ss_pred             hhccchhhhccCHHHHHHHHHHhcC-CCcEEEEEEee
Confidence            9999999888 89999999999999 99999986553

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.86  E-value=5.4e-22  Score=158.83  Aligned_cols=126  Identities=17%  Similarity=0.183  Sum_probs=102.8

Q ss_pred             ChhHHHHHHHHHhhhCCCCcHHH---HHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCc
Q 024647            1 MAELFIKQAKQYAETRPNYPEEL---FKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNI   77 (265)
Q Consensus         1 ~~~~f~~~a~~Y~~~rp~y~~~l---~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~   77 (265)
                      |-+.|++.|+.|+++........   .+.+... .+..+|||||||+|.++..+.    +++|||+|+.|++.+++ .++
T Consensus         2 ~~~~f~~~a~~Yd~w~~~~~~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~~~----~~~giD~s~~~~~~a~~-~~~   75 (208)
T d1vlma_           2 MWHIFERFVNEYERWFLVHRFAYLSELQAVKCL-LPEGRGVEIGVGTGRFAVPLK----IKIGVEPSERMAEIARK-RGV   75 (208)
T ss_dssp             TTHHHHHTHHHHHHHHHHTHHHHHHHHHHHHHH-CCSSCEEEETCTTSTTHHHHT----CCEEEESCHHHHHHHHH-TTC
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh-CCCCeEEEECCCCcccccccc----eEEEEeCChhhcccccc-ccc
Confidence            66899999999998533222222   2333333 445689999999999888774    57999999999999987 378


Q ss_pred             eEEecCCccchhhhhhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecCC
Q 024647           78 RYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTV  140 (265)
Q Consensus        78 ~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~  140 (265)
                      .+.+       +|++++++++++||+|++..++||+ |+..+++++.++|+ |||.+++..+..
T Consensus        76 ~~~~-------~d~~~l~~~~~~fD~I~~~~~l~h~~d~~~~l~~~~~~L~-pgG~l~i~~~~~  131 (208)
T d1vlma_          76 FVLK-------GTAENLPLKDESFDFALMVTTICFVDDPERALKEAYRILK-KGGYLIVGIVDR  131 (208)
T ss_dssp             EEEE-------CBTTBCCSCTTCEEEEEEESCGGGSSCHHHHHHHHHHHEE-EEEEEEEEEECS
T ss_pred             cccc-------ccccccccccccccccccccccccccccccchhhhhhcCC-CCceEEEEecCC
Confidence            8888       6778888899999999999999999 89999999999999 999999877654

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=1.3e-20  Score=154.53  Aligned_cols=119  Identities=15%  Similarity=0.146  Sum_probs=98.7

Q ss_pred             HHhhhCCCCcHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcC-CcEEEEcCCHHHHHHHHcC-------CCceEE
Q 024647           11 QYAETRPNYPEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIF-ENVIGTETSPKQIEFATKL-------PNIRYE   80 (265)
Q Consensus        11 ~Y~~~rp~y~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~-------~~~~~~   80 (265)
                      .+....| +.++.++.|....  .++++|||||||+|..+..+++++ .+|+|||+|+.|++.|++.       .++++.
T Consensus        10 ~h~~~~p-~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~   88 (245)
T d1nkva_          10 EHRIHNP-FTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFI   88 (245)
T ss_dssp             SCSSSSS-CCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred             hccccCC-CCHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhh
Confidence            3333455 5777888887764  678999999999999999998864 6899999999999988752       347888


Q ss_pred             ecCCccchhhhhhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           81 LTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        81 ~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      .       +|++++ .++++||+|++..++||+ |+..+++++.++|| |||.+++..+.
T Consensus        89 ~-------~d~~~~-~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~Lk-PGG~l~i~~~~  139 (245)
T d1nkva_          89 H-------NDAAGY-VANEKCDVAACVGATWIAGGFAGAEELLAQSLK-PGGIMLIGEPY  139 (245)
T ss_dssp             E-------SCCTTC-CCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEE-EEEEEEEEEEE
T ss_pred             h-------hHHhhc-cccCceeEEEEEehhhccCCHHHHHHHHHHHcC-cCcEEEEEecc
Confidence            8       566666 467899999999999999 99999999999999 99999986653

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.84  E-value=4.5e-21  Score=154.78  Aligned_cols=105  Identities=21%  Similarity=0.329  Sum_probs=89.9

Q ss_pred             HHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC-----CCceEEecCCccchhhhhhccCCCCc
Q 024647           26 FITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL-----PNIRYELTSPAMSIAELEQNVAAQST  100 (265)
Q Consensus        26 ~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~d~~~~~~~~~~  100 (265)
                      .+..+.++..+|||||||+|.++..+++.+.+|+|+|+|+.|++.|++.     .++.++.       +|++++++++++
T Consensus        30 ~~~~~l~~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~-------~d~~~l~~~~~~  102 (226)
T d1ve3a1          30 LLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIV-------GDARKLSFEDKT  102 (226)
T ss_dssp             HHHHSCCSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEE-------CCTTSCCSCTTC
T ss_pred             HHHHhcCCCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhccccccccccc-------cccccccccCcC
Confidence            3444567788999999999999999999999999999999999998752     3566666       677888889999


Q ss_pred             eeEEEeccccccC---ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          101 VDLVTIAQAMHWF---DLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       101 ~Dlv~~~~~~~~~---~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      ||+|++..++||+   |+.++++++.++|| |||.+++...
T Consensus       103 fD~I~~~~~l~~~~~~d~~~~l~~i~~~Lk-pgG~lii~~~  142 (226)
T d1ve3a1         103 FDYVIFIDSIVHFEPLELNQVFKEVRRVLK-PSGKFIMYFT  142 (226)
T ss_dssp             EEEEEEESCGGGCCHHHHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred             ceEEEEecchhhCChhHHHHHHHHHHHHcC-cCcEEEEEEc
Confidence            9999999999998   35579999999999 9999987554

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.81  E-value=1.4e-19  Score=146.50  Aligned_cols=124  Identities=16%  Similarity=0.222  Sum_probs=94.4

Q ss_pred             HHHHHHhh----hCCCCcHH---HHHHHHhhCCCCCeEEEEcCCcchhHHHHHhc----CCcEEEEcCCHHHHHHHHcC-
Q 024647            7 KQAKQYAE----TRPNYPEE---LFKFITSKTTNHELAWDVGTGSGQAAASLSGI----FENVIGTETSPKQIEFATKL-   74 (265)
Q Consensus         7 ~~a~~Y~~----~rp~y~~~---l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~-   74 (265)
                      ..|+.|+.    ..|.|..-   +...+..+.+++.+|||||||+|..+..+++.    +.+|+|+|+|+.|++.|++. 
T Consensus         6 ~~a~~fdd~i~~~iP~Y~~~~~~i~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~   85 (225)
T d1im8a_           6 NVAEVFPDMIQRSVPGYSNIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHI   85 (225)
T ss_dssp             HHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHh
Confidence            56777764    56888542   22333445678889999999999999999874    45799999999999999852 


Q ss_pred             ------CCceEEecCCccchhhhhhccCCCCceeEEEeccccccC---ChhHHHHHHHHHhcCCCcEEEEEecCC
Q 024647           75 ------PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF---DLPQFYNQVKWVLKKPNGVIATWCYTV  140 (265)
Q Consensus        75 ------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~---~~~~~l~~~~~~Lk~pgG~l~~~~~~~  140 (265)
                            .++.+..       +|+.+.  +.+.+|+|++..++||+   |+.+++++++++|| |||.+++.++..
T Consensus        86 ~~~~~~~~~~~~~-------~d~~~~--~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~Lk-pgG~li~~~~~~  150 (225)
T d1im8a_          86 AAYHSEIPVEILC-------NDIRHV--EIKNASMVILNFTLQFLPPEDRIALLTKIYEGLN-PNGVLVLSEKFR  150 (225)
T ss_dssp             HTSCCSSCEEEEC-------SCTTTC--CCCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEE-EEEEEEEEEECC
T ss_pred             Hhhcccchhhhcc-------chhhcc--ccccceeeEEeeeccccChhhHHHHHHHHHHhCC-CCceeecccccc
Confidence                  2333333       444444  55689999999999998   45689999999999 999999876653

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.80  E-value=1.6e-19  Score=148.00  Aligned_cols=125  Identities=19%  Similarity=0.252  Sum_probs=96.5

Q ss_pred             HHHHHHHHHhhh-C--CCCcHHH---HHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC---
Q 024647            4 LFIKQAKQYAET-R--PNYPEEL---FKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL---   74 (265)
Q Consensus         4 ~f~~~a~~Y~~~-r--p~y~~~l---~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---   74 (265)
                      .|+..|..||.. +  ..|....   .+.+....+++.+|||+|||+|..+..+++++.+|+|||+|+.|++.|++.   
T Consensus         2 ~y~~~A~~YD~l~~~~~~y~~~~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~   81 (246)
T d1y8ca_           2 CYNKFAHIYDKLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRS   81 (246)
T ss_dssp             CHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccc
Confidence            588889999973 2  3353322   223333445668999999999999999999999999999999999998752   


Q ss_pred             --CCceEEecCCccchhhhhhccCCCCceeEEEec-cccccC-C---hhHHHHHHHHHhcCCCcEEEEEe
Q 024647           75 --PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIA-QAMHWF-D---LPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        75 --~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~-~~~~~~-~---~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                        .++++.+       +|+.++++ +++||+|+|. .+++++ +   +.+++++++++|+ |||.|++..
T Consensus        82 ~~~~v~~~~-------~d~~~~~~-~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~~i~~~  142 (246)
T d1y8ca_          82 QGLKPRLAC-------QDISNLNI-NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLK-EGGVFIFDI  142 (246)
T ss_dssp             TTCCCEEEC-------CCGGGCCC-SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEE-EEEEEEEEE
T ss_pred             cCccceeec-------cchhhhcc-cccccccceeeeeeeccCCHHHHHHHHHHHHHhCC-CCeEEEEEe
Confidence              3677777       66777764 5689999986 467766 3   4569999999999 999998743

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.80  E-value=9.6e-20  Score=149.50  Aligned_cols=128  Identities=22%  Similarity=0.295  Sum_probs=98.1

Q ss_pred             ChhHHHHHHHHHhhhCC----CCcHH--HHHHHH-hhC-CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHH
Q 024647            1 MAELFIKQAKQYAETRP----NYPEE--LFKFIT-SKT-TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFAT   72 (265)
Q Consensus         1 ~~~~f~~~a~~Y~~~rp----~y~~~--l~~~l~-~~~-~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~   72 (265)
                      |-+.|+..|+.|+....    .|..+  .+..+. ... ++..+|||||||+|..+..|++.+.+|+|||+|+.|++.|+
T Consensus         1 ~~~~~~~~a~~Yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~   80 (251)
T d1wzna1           1 MYELYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVAR   80 (251)
T ss_dssp             CCGGGTTTGGGHHHHTHHHHHTHHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CcchhHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccceEEEEEeeccccccccc
Confidence            55678888888888432    22111  122222 222 45678999999999999999999999999999999999988


Q ss_pred             cC-----CCceEEecCCccchhhhhhccCCCCceeEEEecc-ccccCC---hhHHHHHHHHHhcCCCcEEEEEe
Q 024647           73 KL-----PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ-AMHWFD---LPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        73 ~~-----~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~-~~~~~~---~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      +.     .++.+.+       +|+++++++ ++||+|+|.+ ++++++   ..+++++++++|| |||++++..
T Consensus        81 ~~~~~~~~~i~~~~-------~d~~~l~~~-~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~Lk-pgG~lii~~  145 (251)
T d1wzna1          81 RKAKERNLKIEFLQ-------GDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALK-PGGVFITDF  145 (251)
T ss_dssp             HHHHHTTCCCEEEE-------SCGGGCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             cccccccccchhee-------hhhhhcccc-cccchHhhhhhhhhcCChHHHHHHHHHHHHHcC-CCcEEEEEe
Confidence            62     3677777       777888765 5899999975 777774   4579999999999 999998844

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=5.9e-19  Score=146.48  Aligned_cols=106  Identities=17%  Similarity=0.243  Sum_probs=88.6

Q ss_pred             HHHHHHhhC-CCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHc-CCCceEEecCCccchhhhhhccCCC
Q 024647           23 LFKFITSKT-TNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATK-LPNIRYELTSPAMSIAELEQNVAAQ   98 (265)
Q Consensus        23 l~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~~~~   98 (265)
                      +...+.... .++.+|||||||+|.++..+++.++  +++|+|+|+.|++.|++ .+++.+.+       +|++++++++
T Consensus        73 ~~~~l~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~-------~d~~~l~~~~  145 (268)
T d1p91a_          73 IVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCV-------ASSHRLPFSD  145 (268)
T ss_dssp             HHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEE-------CCTTSCSBCT
T ss_pred             HHHHHHHhcCCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccccccccee-------eehhhccCCC
Confidence            333444444 4668999999999999999999875  68999999999999875 57888888       6778899999


Q ss_pred             CceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecCCCC
Q 024647           99 STVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTVPE  142 (265)
Q Consensus        99 ~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~  142 (265)
                      ++||+|++.++.|+      ++++.|+|| |||.+++..++...
T Consensus       146 ~sfD~v~~~~~~~~------~~e~~rvLk-pgG~l~~~~p~~~~  182 (268)
T d1p91a_         146 TSMDAIIRIYAPCK------AEELARVVK-PGGWVITATPGPRH  182 (268)
T ss_dssp             TCEEEEEEESCCCC------HHHHHHHEE-EEEEEEEEEECTTT
T ss_pred             CCEEEEeecCCHHH------HHHHHHHhC-CCcEEEEEeeCCcc
Confidence            99999999877665      678999999 99999998887544

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.77  E-value=5.7e-19  Score=142.86  Aligned_cols=100  Identities=16%  Similarity=0.222  Sum_probs=86.7

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC--CCceEEecCCccchhhhhhccCCCCceeEEEecccc
Q 024647           33 NHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL--PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAM  110 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~--~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~  110 (265)
                      ++.+|||||||+|.++..+++.+.+|+|||+|+.|++.|++.  .++.+..       +++++.++ +++||+|++..++
T Consensus        20 ~~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~~~~~~~~~-------~~~~~~~~-~~~fD~I~~~~vl   91 (225)
T d2p7ia1          20 RPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKDGITYIH-------SRFEDAQL-PRRYDNIVLTHVL   91 (225)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCSCEEEEE-------SCGGGCCC-SSCEEEEEEESCG
T ss_pred             CCCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhccccccccccc-------cccccccc-cccccccccccee
Confidence            456899999999999999999999999999999999999852  4677777       56667654 5799999999999


Q ss_pred             ccC-ChhHHHHHHH-HHhcCCCcEEEEEecCCC
Q 024647          111 HWF-DLPQFYNQVK-WVLKKPNGVIATWCYTVP  141 (265)
Q Consensus       111 ~~~-~~~~~l~~~~-~~Lk~pgG~l~~~~~~~~  141 (265)
                      ||+ |+..+++++. ++|+ |||.+++..++..
T Consensus        92 eh~~d~~~~l~~i~~~~Lk-~gG~l~i~~pn~~  123 (225)
T d2p7ia1          92 EHIDDPVALLKRINDDWLA-EGGRLFLVCPNAN  123 (225)
T ss_dssp             GGCSSHHHHHHHHHHTTEE-EEEEEEEEEECTT
T ss_pred             EecCCHHHHHHHHHHHhcC-CCceEEEEeCCcc
Confidence            999 8999999998 7999 9999999776533

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.76  E-value=2.8e-18  Score=136.02  Aligned_cols=116  Identities=17%  Similarity=0.281  Sum_probs=91.1

Q ss_pred             HHhhhCCCCcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc------CCCceEEecCC
Q 024647           11 QYAETRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK------LPNIRYELTSP   84 (265)
Q Consensus        11 ~Y~~~rp~y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~   84 (265)
                      .|...++  +.+++..+.  ...+.+|||||||+|..+..+++++.+|+|+|+|+.|++.+++      .+++.+..   
T Consensus        12 ~~~~~~~--~~~~~~~~~--~~~~grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~---   84 (198)
T d2i6ga1          12 KYGLTRT--HSDVLAAAK--VVAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDL---   84 (198)
T ss_dssp             HHCBCCC--CHHHHHHHT--TSCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEE---
T ss_pred             ccCCCCC--HHHHHHHcc--cCCCCcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhhccccchhhhh---
Confidence            4655544  245555442  2344689999999999999999999999999999999998764      25566666   


Q ss_pred             ccchhhhhhccCCCCceeEEEeccccccCCh---hHHHHHHHHHhcCCCcEEEEEecC
Q 024647           85 AMSIAELEQNVAAQSTVDLVTIAQAMHWFDL---PQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        85 ~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~---~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                          .|+..++ ++++||+|++..++|++++   .++++++.++|+ |||.+++....
T Consensus        85 ----~d~~~~~-~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~-pgG~~~~~~~~  136 (198)
T d2i6ga1          85 ----VDLNTLT-FDGEYDFILSTVVMMFLEAQTIPGLIANMQRCTK-PGGYNLIVAAM  136 (198)
T ss_dssp             ----CCTTTCC-CCCCEEEEEEESCGGGSCTTHHHHHHHHHHHTEE-EEEEEEEEEEB
T ss_pred             ----eeccccc-ccccccEEEEeeeeecCCHHHHHHHHHHHHHHcC-CCcEEEEEEec
Confidence                6667665 4679999999999999843   369999999999 99999886554

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.76  E-value=1.8e-18  Score=144.47  Aligned_cols=111  Identities=14%  Similarity=0.187  Sum_probs=93.1

Q ss_pred             CcHHHHHHHHhhC---CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC-----CCceEEecCCccc
Q 024647           19 YPEELFKFITSKT---TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL-----PNIRYELTSPAMS   87 (265)
Q Consensus        19 y~~~l~~~l~~~~---~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~   87 (265)
                      |.++.++.+....   .++.+|||+|||+|..+..+++..   .+|+|+|+|+.|++.|++.     .++++..      
T Consensus        10 ~n~d~l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~------   83 (281)
T d2gh1a1          10 YNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLE------   83 (281)
T ss_dssp             CCHHHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEE------
T ss_pred             hhHHHHHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccc------
Confidence            5677788887643   467899999999999999999864   4699999999999998752     2567776      


Q ss_pred             hhhhhhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647           88 IAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        88 ~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                       +|++.++++ ++||+|++..++||+ |+..+++++.++|| |||.+++..+
T Consensus        84 -~d~~~~~~~-~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lk-pgG~lii~~~  132 (281)
T d2gh1a1          84 -GDATEIELN-DKYDIAICHAFLLHMTTPETMLQKMIHSVK-KGGKIICFEP  132 (281)
T ss_dssp             -SCTTTCCCS-SCEEEEEEESCGGGCSSHHHHHHHHHHTEE-EEEEEEEEEC
T ss_pred             -ccccccccc-CCceEEEEehhhhcCCCHHHHHHHHHHHcC-cCcEEEEEEC
Confidence             666777654 589999999999999 89999999999999 9999998765

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.6e-18  Score=139.88  Aligned_cols=100  Identities=20%  Similarity=0.216  Sum_probs=84.4

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcC-CcEEEEcCCHHHHHHHHcC------CCceEEecCCccchhhhhhccCCCCceeEE
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIF-ENVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAELEQNVAAQSTVDLV  104 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv  104 (265)
                      .+..+|||||||+|..+..+++.+ .+|+|||+|+.|++.|++.      .++++.+       +|++++++++++||+|
T Consensus        59 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~-------~d~~~~~~~~~~fD~I  131 (222)
T d2ex4a1          59 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFC-------CGLQDFTPEPDSYDVI  131 (222)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEE-------CCGGGCCCCSSCEEEE
T ss_pred             CCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccccccccccc-------cccccccccccccccc
Confidence            345789999999999999987654 4799999999999998752      3567777       6778888888999999


Q ss_pred             EeccccccCC-h--hHHHHHHHHHhcCCCcEEEEEecC
Q 024647          105 TIAQAMHWFD-L--PQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       105 ~~~~~~~~~~-~--~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      ++..++|++. +  ..+++++.++|+ |||.+++....
T Consensus       132 ~~~~~l~h~~~~~~~~~l~~i~~~Lk-~~G~~~i~~~~  168 (222)
T d2ex4a1         132 WIQWVIGHLTDQHLAEFLRRCKGSLR-PNGIIVIKDNM  168 (222)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEEE
T ss_pred             ccccccccchhhhhhhHHHHHHHhcC-CcceEEEEEcc
Confidence            9999999994 3  379999999999 99999986553

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.73  E-value=3.9e-18  Score=140.19  Aligned_cols=105  Identities=13%  Similarity=0.121  Sum_probs=85.0

Q ss_pred             HHhhCCCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccC-C
Q 024647           27 ITSKTTNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVA-A   97 (265)
Q Consensus        27 l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~-~   97 (265)
                      |..+.+++.+|||||||+|..+..+++.+. +|+|||+|+.|++.|+.+       .++.+.+       +|+...++ .
T Consensus        18 I~~~~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~-------~D~~~~~~~~   90 (252)
T d1ri5a_          18 IRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRA-------QDSYGRHMDL   90 (252)
T ss_dssp             HHHHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEE-------SCTTTSCCCC
T ss_pred             HHHhCCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEE-------cchhhhcccc
Confidence            344567889999999999999999998765 799999999999998742       3577777       55544443 4


Q ss_pred             CCceeEEEeccccccC-Ch----hHHHHHHHHHhcCCCcEEEEEecC
Q 024647           98 QSTVDLVTIAQAMHWF-DL----PQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        98 ~~~~Dlv~~~~~~~~~-~~----~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      +++||+|+|.+++||+ ++    ..+++++.++|+ |||.+++..+.
T Consensus        91 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk-~gG~~i~~~~~  136 (252)
T d1ri5a_          91 GKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLR-PGGYFIMTVPS  136 (252)
T ss_dssp             SSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEE-EEEEEEEEEEC
T ss_pred             cccceEEEEcceeeecCCCHHHHHHHHHHHhceeC-CCCEEEEEecC
Confidence            6689999999999997 43    368999999999 99999886654

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.73  E-value=6.4e-18  Score=139.04  Aligned_cols=98  Identities=24%  Similarity=0.313  Sum_probs=83.7

Q ss_pred             CCCeEEEEcCCcchhHHHHHhc-CCcEEEEcCCHHHHHHHHcC----CCceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647           33 NHELAWDVGTGSGQAAASLSGI-FENVIGTETSPKQIEFATKL----PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIA  107 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~  107 (265)
                      +..+|||+|||+|.++..|+.. +.+|++||+|+.|++.|++.    +++++.+       ++++++++++++||+|++.
T Consensus        93 ~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~-------~d~~~~~~~~~~fD~I~~~  165 (254)
T d1xtpa_          93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFIL-------ASMETATLPPNTYDLIVIQ  165 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEE-------SCGGGCCCCSSCEEEEEEE
T ss_pred             CCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccccceeEE-------ccccccccCCCccceEEee
Confidence            5678999999999999998765 56799999999999999852    4567777       6778888888999999999


Q ss_pred             cccccC-Ch--hHHHHHHHHHhcCCCcEEEEEec
Q 024647          108 QAMHWF-DL--PQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       108 ~~~~~~-~~--~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      +++||+ |.  .++++++.++|+ |||.+++..+
T Consensus       166 ~vl~hl~d~d~~~~l~~~~~~Lk-pgG~iii~e~  198 (254)
T d1xtpa_         166 WTAIYLTDADFVKFFKHCQQALT-PNGYIFFKEN  198 (254)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred             ccccccchhhhHHHHHHHHHhcC-CCcEEEEEec
Confidence            999999 44  378999999999 9999998654

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.72  E-value=5.5e-18  Score=133.54  Aligned_cols=113  Identities=14%  Similarity=0.035  Sum_probs=87.3

Q ss_pred             CCcHHHHHHHHhh-CCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC------------------CCce
Q 024647           18 NYPEELFKFITSK-TTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL------------------PNIR   78 (265)
Q Consensus        18 ~y~~~l~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------------------~~~~   78 (265)
                      ..++.+.+.+... .+++.+|||+|||+|..+..|++++.+|+|+|+|+.|++.|+++                  .+..
T Consensus         4 ~~~~~~~~~~~~l~~~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~   83 (201)
T d1pjza_           4 EVNKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIE   83 (201)
T ss_dssp             SSTHHHHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSE
T ss_pred             hHHHHHHHHHHHcCCCCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccc
Confidence            3455666666554 36778999999999999999999999999999999999999852                  1223


Q ss_pred             EEecCCccchhhhhhcc-CCCCceeEEEeccccccCC---hhHHHHHHHHHhcCCCcEEEEEec
Q 024647           79 YELTSPAMSIAELEQNV-AAQSTVDLVTIAQAMHWFD---LPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        79 ~~~~~~~~~~~d~~~~~-~~~~~~Dlv~~~~~~~~~~---~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      +.+       +|+..++ ....+||+|++..++|++.   ...+++++.++|| |||.+++...
T Consensus        84 ~~~-------~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~Lk-pgG~l~l~~~  139 (201)
T d1pjza_          84 IWC-------GDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMP-QACSGLLITL  139 (201)
T ss_dssp             EEE-------ECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSC-SEEEEEEEEE
T ss_pred             eec-------ccccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcC-CCcEEEEEEc
Confidence            333       4444443 2345799999999999984   4579999999999 9999876444

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=6.6e-17  Score=130.88  Aligned_cols=127  Identities=10%  Similarity=-0.024  Sum_probs=97.0

Q ss_pred             HHHHHHHHhhhC-----CCCcHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC---
Q 024647            5 FIKQAKQYAETR-----PNYPEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL---   74 (265)
Q Consensus         5 f~~~a~~Y~~~r-----p~y~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---   74 (265)
                      ++...+.|++..     ....+.+.+++....  +++.+|||+|||+|..+..|++.+.+|+|||+|+.+++.+++.   
T Consensus        10 ~e~W~~~~~~~~~~w~~~~~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~   89 (229)
T d2bzga1          10 LEEWQDKWVNGKTAFHQEQGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNL   89 (229)
T ss_dssp             HHHHHHHHHHTCCTTCCTTCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTC
T ss_pred             HHHHHHHHccCCCCCccCCCCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhc
Confidence            344556676633     234677777776543  4678999999999999999999999999999999999987642   


Q ss_pred             --------------------CCceEEecCCccchhhhhhcc-CCCCceeEEEeccccccCC---hhHHHHHHHHHhcCCC
Q 024647           75 --------------------PNIRYELTSPAMSIAELEQNV-AAQSTVDLVTIAQAMHWFD---LPQFYNQVKWVLKKPN  130 (265)
Q Consensus        75 --------------------~~~~~~~~~~~~~~~d~~~~~-~~~~~~Dlv~~~~~~~~~~---~~~~l~~~~~~Lk~pg  130 (265)
                                          .++++.+       +|+..++ ...+.||+|+...++|++.   ....++++.++|| ||
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~v~~~~-------~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~Lk-pg  161 (229)
T d2bzga1          90 SYSEEPITEIPGTKVFKSSSGNISLYC-------CSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLG-KK  161 (229)
T ss_dssp             CEEEEECTTSTTCEEEEETTSSEEEEE-------SCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEE-EE
T ss_pred             cccccchhcccccceeeecCCcEEEEE-------cchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcC-Cc
Confidence                                2344555       5555543 4667999999999999884   3579999999999 99


Q ss_pred             cEEEEEecC
Q 024647          131 GVIATWCYT  139 (265)
Q Consensus       131 G~l~~~~~~  139 (265)
                      |++++..+.
T Consensus       162 G~~~l~~~~  170 (229)
T d2bzga1         162 FQYLLCVLS  170 (229)
T ss_dssp             EEEEEEEEE
T ss_pred             ceEEEEEcc
Confidence            998775543

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=5.2e-17  Score=135.30  Aligned_cols=128  Identities=14%  Similarity=0.112  Sum_probs=87.2

Q ss_pred             CeEEEEcCCcchhHHHHHhc----C----CcEEEEcCCHHHHHHHHcC-------CCceEE--ecCCccchhhhhhccCC
Q 024647           35 ELAWDVGTGSGQAAASLSGI----F----ENVIGTETSPKQIEFATKL-------PNIRYE--LTSPAMSIAELEQNVAA   97 (265)
Q Consensus        35 ~~vlDvGcG~G~~~~~l~~~----~----~~v~~vD~s~~~~~~a~~~-------~~~~~~--~~~~~~~~~d~~~~~~~   97 (265)
                      .+|||||||+|.++..+++.    +    .+++|||+|+.|++.+++.       .++.+.  ....+-. .+....+.+
T Consensus        42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  120 (280)
T d1jqea_          42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEY-QSRMLEKKE  120 (280)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHH-HHHHTTSSS
T ss_pred             CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhh-cchhcccCC
Confidence            47999999999999888654    2    2589999999999988752       333332  2211000 011123457


Q ss_pred             CCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecCCCCCChH-HHHhhcccccCCCCCCcc
Q 024647           98 QSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVS-VDAVFQPFYTVDSDPFWE  164 (265)
Q Consensus        98 ~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  164 (265)
                      +++||+|++.+++||+ |+..+++++.++|+ |||.+++..+........ +......+......+++.
T Consensus       121 ~~~fD~I~~~~~l~~~~d~~~~l~~l~~~Lk-pgG~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  188 (280)
T d1jqea_         121 LQKWDFIHMIQMLYYVKDIPATLKFFHSLLG-TNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYIT  188 (280)
T ss_dssp             CCCEEEEEEESCGGGCSCHHHHHHHHHHTEE-EEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTSCCCC
T ss_pred             CCceeEEEEccceecCCCHHHHHHHHHhhCC-CCCEEEEEEecCcchHHHHHHHHHHhcCCCcccccCC
Confidence            7899999999999999 89999999999999 999998877765443222 333334443334445554

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.66  E-value=1.7e-16  Score=129.90  Aligned_cols=109  Identities=17%  Similarity=0.148  Sum_probs=87.1

Q ss_pred             cHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC-----CCceEEecCCccchhhhhhc
Q 024647           20 PEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL-----PNIRYELTSPAMSIAELEQN   94 (265)
Q Consensus        20 ~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~d~~~~   94 (265)
                      +.-++++|.....++++|||+|||+|.++..+++.+++|+|+|+|+.|++.|+++     -++.+..       +|+...
T Consensus       107 T~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~-------~d~~~~  179 (254)
T d2nxca1         107 TRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLE-------GSLEAA  179 (254)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEE-------SCHHHH
T ss_pred             hhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCCceeEEe-------cccccc
Confidence            3566777877788899999999999999999999999999999999999998852     2445555       455443


Q ss_pred             cCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           95 VAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        95 ~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                       .+.++||+|+++...+  ....+++++.++|| |||++++....
T Consensus       180 -~~~~~fD~V~ani~~~--~l~~l~~~~~~~Lk-pGG~lilSgil  220 (254)
T d2nxca1         180 -LPFGPFDLLVANLYAE--LHAALAPRYREALV-PGGRALLTGIL  220 (254)
T ss_dssp             -GGGCCEEEEEEECCHH--HHHHHHHHHHHHEE-EEEEEEEEEEE
T ss_pred             -ccccccchhhhccccc--cHHHHHHHHHHhcC-CCcEEEEEecc
Confidence             4567999999975433  34578899999999 99999986553

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.65  E-value=2.5e-16  Score=123.43  Aligned_cols=112  Identities=21%  Similarity=0.312  Sum_probs=89.5

Q ss_pred             CCCcHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC-------CCceEEecCCccc
Q 024647           17 PNYPEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL-------PNIRYELTSPAMS   87 (265)
Q Consensus        17 p~y~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~   87 (265)
                      |+ .+++...+.+..  .++++|||+|||+|.++..+++.+++|+|+|+++.|++.|++.       .++++..      
T Consensus        16 ~t-~~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~------   88 (186)
T d1l3ia_          16 PT-AMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLME------   88 (186)
T ss_dssp             CC-CHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEE------
T ss_pred             CC-hHHHHHHHHHhcCCCCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEE------
Confidence            45 345545554443  5678999999999999999999999999999999999998862       4777777      


Q ss_pred             hhhhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           88 IAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        88 ~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                       +|+.+...+.+.||+|++....+  +...+++.+.+.|| |||.+++....
T Consensus        89 -gda~~~~~~~~~~D~v~~~~~~~--~~~~~~~~~~~~Lk-pgG~lvi~~~~  136 (186)
T d1l3ia_          89 -GDAPEALCKIPDIDIAVVGGSGG--ELQEILRIIKDKLK-PGGRIIVTAIL  136 (186)
T ss_dssp             -SCHHHHHTTSCCEEEEEESCCTT--CHHHHHHHHHHTEE-EEEEEEEEECB
T ss_pred             -CchhhcccccCCcCEEEEeCccc--cchHHHHHHHHHhC-cCCEEEEEeec
Confidence             66666666778999999987544  45688999999999 99999886553

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.65  E-value=4.2e-16  Score=122.88  Aligned_cols=106  Identities=19%  Similarity=0.229  Sum_probs=84.6

Q ss_pred             HHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc------C--CCceEEecCCccchhhhhhc
Q 024647           25 KFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK------L--PNIRYELTSPAMSIAELEQN   94 (265)
Q Consensus        25 ~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~------~--~~~~~~~~~~~~~~~d~~~~   94 (265)
                      +.|.+..  .++.+|||+|||+|.++..+++.+++|+++|+|+.+++.+++      .  .++.+..       +|+.+ 
T Consensus        42 ~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~-------~d~~~-  113 (194)
T d1dusa_          42 KILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVH-------SDLYE-  113 (194)
T ss_dssp             HHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEE-------CSTTT-
T ss_pred             HHHHHhCCcCCCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHHHHhCCccceEEEEE-------cchhh-
Confidence            3444443  467899999999999999999999999999999999999875      1  2356665       45544 


Q ss_pred             cCCCCceeEEEeccccccC-C-hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           95 VAAQSTVDLVTIAQAMHWF-D-LPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        95 ~~~~~~~Dlv~~~~~~~~~-~-~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      ..++++||+|+++..+|+. + ...+++++.++|+ |||.+++....
T Consensus       114 ~~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~  159 (194)
T d1dusa_         114 NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLK-DNGEIWVVIQT  159 (194)
T ss_dssp             TCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEE-EEEEEEEEEES
T ss_pred             hhccCCceEEEEcccEEecchhhhhHHHHHHHhcC-cCcEEEEEEeC
Confidence            3567899999999998877 3 3678999999999 99998875543

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.5e-16  Score=127.47  Aligned_cols=111  Identities=13%  Similarity=0.052  Sum_probs=82.7

Q ss_pred             HHHHHHHHhhC-CCCCeEEEEcCCcchhHHHHHhcC-CcEEEEcCCHHHHHHHHcC-----CCceEEecCCccchhhhhh
Q 024647           21 EELFKFITSKT-TNHELAWDVGTGSGQAAASLSGIF-ENVIGTETSPKQIEFATKL-----PNIRYELTSPAMSIAELEQ   93 (265)
Q Consensus        21 ~~l~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~d~~~   93 (265)
                      ..+++.+.... .++++|||||||+|..+..++++. .+|+|||+|+.|++.|++.     .++......+     ....
T Consensus        40 ~~~~~~la~~~~~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~  114 (229)
T d1zx0a1          40 TPYMHALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLW-----EDVA  114 (229)
T ss_dssp             HHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCH-----HHHG
T ss_pred             HHHHHHHHHhhccCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcccccccccccc-----cccc
Confidence            44555555443 567899999999999999999876 5799999999999999752     3445555332     2223


Q ss_pred             ccCCCCceeEEEe-----ccccccC-ChhHHHHHHHHHhcCCCcEEEEEe
Q 024647           94 NVAAQSTVDLVTI-----AQAMHWF-DLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        94 ~~~~~~~~Dlv~~-----~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      .++++++||.|+.     ...+++. ++..+++++.|+|| |||+|++++
T Consensus       115 ~~~~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~Lk-pGG~~~~~~  163 (229)
T d1zx0a1         115 PTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLK-PGGVLTYCN  163 (229)
T ss_dssp             GGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEE-EEEEEEECC
T ss_pred             cccccccccceeecccccccccccccCHHHHHHHHHHHcC-CCcEEEEEe
Confidence            3467889999984     3444444 78899999999999 999998744

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.63  E-value=8.6e-16  Score=127.69  Aligned_cols=104  Identities=18%  Similarity=0.188  Sum_probs=81.2

Q ss_pred             HHHHHhhC--CCCCeEEEEcCCcchhHHHHHhc-CCcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhh
Q 024647           24 FKFITSKT--TNHELAWDVGTGSGQAAASLSGI-FENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQ   93 (265)
Q Consensus        24 ~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~   93 (265)
                      ++.+...+  +++++|||||||+|.++..++++ +.+|+|+|+|+.+++.|+++       ..+.+..       .|...
T Consensus        41 ~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~-------~d~~~  113 (280)
T d2fk8a1          41 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLL-------QGWED  113 (280)
T ss_dssp             HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEE-------SCGGG
T ss_pred             HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhh-------hhhhh
Confidence            44455543  57899999999999999999876 67899999999999988752       2333333       34333


Q ss_pred             ccCCCCceeEEEeccccccC-Ch--hHHHHHHHHHhcCCCcEEEEEec
Q 024647           94 NVAAQSTVDLVTIAQAMHWF-DL--PQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        94 ~~~~~~~~Dlv~~~~~~~~~-~~--~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                         .+++||.|++..+++++ +.  ..+++++.++|| |||.+++...
T Consensus       114 ---~~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~Lk-pgG~~~i~~i  157 (280)
T d2fk8a1         114 ---FAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMP-ADGRMTVQSS  157 (280)
T ss_dssp             ---CCCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSC-TTCEEEEEEE
T ss_pred             ---hccchhhhhHhhHHHHhhhhhHHHHHHHHHhccC-CCceEEEEEe
Confidence               34689999999999888 33  689999999999 9999998543

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.63  E-value=5.7e-16  Score=127.00  Aligned_cols=114  Identities=21%  Similarity=0.294  Sum_probs=94.3

Q ss_pred             hCCCCcHHHHHHHHhh-CCCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHc---------CCCceEEe
Q 024647           15 TRPNYPEELFKFITSK-TTNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATK---------LPNIRYEL   81 (265)
Q Consensus        15 ~rp~y~~~l~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~---------~~~~~~~~   81 (265)
                      .++-||.+....+... ..++++|||+|||+|.+|..|++..   .+|+++|+++++++.|++         ..|+.+..
T Consensus        77 tqiiypkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~  156 (264)
T d1i9ga_          77 PQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVV  156 (264)
T ss_dssp             SCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEEC
T ss_pred             ccccchHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEe
Confidence            5668888877666544 3688999999999999999999873   379999999999999875         25677776


Q ss_pred             cCCccchhhhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecCC
Q 024647           82 TSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTV  140 (265)
Q Consensus        82 ~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~~  140 (265)
                             +|+.+.++++++||.|++    |..+|..++.++.++|| |||.++++.+.-
T Consensus       157 -------~d~~~~~~~~~~fDaV~l----dlp~P~~~l~~~~~~Lk-pGG~lv~~~P~i  203 (264)
T d1i9ga_         157 -------SDLADSELPDGSVDRAVL----DMLAPWEVLDAVSRLLV-AGGVLMVYVATV  203 (264)
T ss_dssp             -------SCGGGCCCCTTCEEEEEE----ESSCGGGGHHHHHHHEE-EEEEEEEEESSH
T ss_pred             -------cccccccccCCCcceEEE----ecCCHHHHHHHHHhccC-CCCEEEEEeCcc
Confidence                   667777788899999986    44588899999999999 999999988763

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=1.4e-15  Score=127.42  Aligned_cols=113  Identities=16%  Similarity=0.140  Sum_probs=79.7

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC-----C-----CceEEecCCccch
Q 024647           21 EELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL-----P-----NIRYELTSPAMSI   88 (265)
Q Consensus        21 ~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~-----~~~~~~~~~~~~~   88 (265)
                      ....+++....  .+..+|||+|||+|..+..|++++.+|+|+|+|+.|++.|++.     .     ...+...+  +..
T Consensus        42 ~~~~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~--~~~  119 (292)
T d1xvaa_          42 AEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEAN--WLT  119 (292)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECC--GGG
T ss_pred             HHHHHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHhcccccccceeeeeecc--ccc
Confidence            34444444433  3457899999999999999999999999999999999998752     1     12222221  111


Q ss_pred             hhhhhccCCCCceeEEEecc-ccccC-C-------hhHHHHHHHHHhcCCCcEEEEEec
Q 024647           89 AELEQNVAAQSTVDLVTIAQ-AMHWF-D-------LPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        89 ~d~~~~~~~~~~~Dlv~~~~-~~~~~-~-------~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      .+ ...+ ..++||+|+|.. +++++ +       ...+++++.++|| |||+|++...
T Consensus       120 ~~-~~~~-~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~li~~~~  175 (292)
T d1xvaa_         120 LD-KDVP-AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVR-PGGLLVIDHR  175 (292)
T ss_dssp             HH-HHSC-CTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEE-EEEEEEEEEE
T ss_pred             cc-cccC-CCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcC-cCcEEEEeec
Confidence            22 1232 456899999865 67666 3       3469999999999 9999998543

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.61  E-value=1.8e-15  Score=119.84  Aligned_cols=100  Identities=21%  Similarity=0.236  Sum_probs=81.7

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhccCCCCceeE
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQNVAAQSTVDL  103 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dl  103 (265)
                      ++...|||||||+|..+..+++.++  .++|||+++.++..+.+      ..|+.+..+++    .++.+. ++++++|.
T Consensus        28 ~~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da----~~l~~~-~~~~~~d~  102 (204)
T d2fcaa1          28 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDA----DTLTDV-FEPGEVKR  102 (204)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCG----GGHHHH-CCTTSCCE
T ss_pred             CCCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccch----hhhhcc-cCchhhhc
Confidence            3445799999999999999999876  59999999999987754      47898888554    222222 67889999


Q ss_pred             EEeccccccCCh---------hHHHHHHHHHhcCCCcEEEEEe
Q 024647          104 VTIAQAMHWFDL---------PQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       104 v~~~~~~~~~~~---------~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      |++.+..+|...         ..+++++.|+|| |||.|.+.+
T Consensus       103 v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~Lk-pgG~l~i~T  144 (204)
T d2fcaa1         103 VYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMG-KGGSIHFKT  144 (204)
T ss_dssp             EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHT-TSCEEEEEE
T ss_pred             cccccccccchhhhcchhhhHHHHHHHHHHhCC-CCcEEEEEE
Confidence            999999999842         379999999999 999998865

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.60  E-value=2.1e-15  Score=121.65  Aligned_cols=119  Identities=18%  Similarity=0.149  Sum_probs=90.2

Q ss_pred             HhhhCCCCcHHHHHHHHhh-----CCCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHc----CCCceEE
Q 024647           12 YAETRPNYPEELFKFITSK-----TTNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATK----LPNIRYE   80 (265)
Q Consensus        12 Y~~~rp~y~~~l~~~l~~~-----~~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~----~~~~~~~   80 (265)
                      |..+.|.. +++...|...     .+++++|||+|||+|..+..+++.++  .|+|+|+|+.|++.++.    .+|+..+
T Consensus        49 ~r~w~p~r-sklaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i  127 (230)
T d1g8sa_          49 YRIWNPNK-SKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPI  127 (230)
T ss_dssp             EEECCTTT-CHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEE
T ss_pred             eeeECCCc-cHHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceE
Confidence            55567764 5666666543     25788999999999999999999874  69999999999998875    4677777


Q ss_pred             ecCCccchhhhhhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647           81 LTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        81 ~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      ..+.    .+..  ...+..+|++++...+|+. ++..++.++.+.|| |||.+++...
T Consensus       128 ~~d~----~~~~--~~~~~~~~v~~i~~~~~~~~~~~~~l~~~~r~LK-pgG~~~i~~k  179 (230)
T d1g8sa_         128 LGDA----NKPQ--EYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLK-KGGYGMIAIK  179 (230)
T ss_dssp             ECCT----TCGG--GGTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred             EEee----ccCc--ccccccceeEEeeccccchHHHHHHHHHHHHhcc-cCceEEEEee
Confidence            7543    2222  2345567877777777777 67789999999999 9999887544

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.60  E-value=4.1e-15  Score=124.01  Aligned_cols=105  Identities=19%  Similarity=0.195  Sum_probs=81.3

Q ss_pred             HHHHHhhC--CCCCeEEEEcCCcchhHHHHHh-cCCcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhh
Q 024647           24 FKFITSKT--TNHELAWDVGTGSGQAAASLSG-IFENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQ   93 (265)
Q Consensus        24 ~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~   93 (265)
                      ++++...+  +++++|||||||.|.++..+++ .+++|+|+++|+.+++.++++       ..+.+..       .|.  
T Consensus        50 ~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~-------~d~--  120 (291)
T d1kpia_          50 RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRI-------QGW--  120 (291)
T ss_dssp             HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEE-------CCG--
T ss_pred             HHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhh-------hcc--
Confidence            44454443  5789999999999999999886 467999999999999987652       2334433       332  


Q ss_pred             ccCCCCceeEEEeccccccC-C---------hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           94 NVAAQSTVDLVTIAQAMHWF-D---------LPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        94 ~~~~~~~~Dlv~~~~~~~~~-~---------~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                       +..+++||.|++..++.++ +         ...+++++.++|| |||.+++.+..
T Consensus       121 -~~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~Lk-pgG~~~l~~i~  174 (291)
T d1kpia_         121 -EEFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTP-DDGRMLLHTIT  174 (291)
T ss_dssp             -GGCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSC-TTCEEEEEEEE
T ss_pred             -cccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCC-CCCceEEEEEe
Confidence             3457899999999988766 5         3689999999999 99999985543

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.60  E-value=2.4e-15  Score=119.73  Aligned_cols=121  Identities=20%  Similarity=0.178  Sum_probs=84.7

Q ss_pred             HHhhhCCCCcHHHHHHHHhh----CCCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHc----CCCceEE
Q 024647           11 QYAETRPNYPEELFKFITSK----TTNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATK----LPNIRYE   80 (265)
Q Consensus        11 ~Y~~~rp~y~~~l~~~l~~~----~~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~----~~~~~~~   80 (265)
                      .|..+-|.. .++...+...    .+++++|||+|||+|..+..+++..+  +|+|+|+|+.|++.+++    .+|+.++
T Consensus        31 ~~r~w~p~r-sklaa~i~~g~~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i  109 (209)
T d1nt2a_          31 GYREWVPWR-SKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPL  109 (209)
T ss_dssp             TEEECCGGG-CHHHHHHHTSCCCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEE
T ss_pred             ceeeeCCcc-hHHHHHHhccccCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEE
Confidence            355555654 3555555432    35789999999999999999998764  69999999999998764    5788888


Q ss_pred             ecCCccchhhhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647           81 LTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        81 ~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      ..++    .+....+.....+|+|+.. ..|+-+...++.++.++|| |||.+++...
T Consensus       110 ~~d~----~~~~~~~~~~~~vd~v~~~-~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~  161 (209)
T d1nt2a_         110 LFDA----SKPWKYSGIVEKVDLIYQD-IAQKNQIEILKANAEFFLK-EKGEVVIMVK  161 (209)
T ss_dssp             CSCT----TCGGGTTTTCCCEEEEEEC-CCSTTHHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred             Eeec----cCccccccccceEEEEEec-ccChhhHHHHHHHHHHHhc-cCCeEEEEEE
Confidence            8544    2222222222345544432 3344577889999999999 9999987554

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.58  E-value=8.5e-15  Score=121.68  Aligned_cols=104  Identities=24%  Similarity=0.265  Sum_probs=82.5

Q ss_pred             HHHHHhhC--CCCCeEEEEcCCcchhHHHHHhc-CCcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhh
Q 024647           24 FKFITSKT--TNHELAWDVGTGSGQAAASLSGI-FENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQ   93 (265)
Q Consensus        24 ~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~   93 (265)
                      ++.+...+  +++.+|||||||.|.++..+++. +++|+||++|+.+++.|+++       .++.+..       +|..+
T Consensus        51 ~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~-------~d~~~  123 (285)
T d1kpga_          51 IDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLL-------AGWEQ  123 (285)
T ss_dssp             HHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEE-------SCGGG
T ss_pred             HHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHH-------hhhhc
Confidence            34444443  57899999999999999998765 57999999999999988652       4556665       55555


Q ss_pred             ccCCCCceeEEEeccccccC-C--hhHHHHHHHHHhcCCCcEEEEEec
Q 024647           94 NVAAQSTVDLVTIAQAMHWF-D--LPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        94 ~~~~~~~~Dlv~~~~~~~~~-~--~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      +   +++||.|++..++.++ +  ...+++++.++|+ |||.+++.+.
T Consensus       124 ~---~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~Lk-pgG~~~l~~i  167 (285)
T d1kpga_         124 F---DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLP-ADGVMLLHTI  167 (285)
T ss_dssp             C---CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSC-TTCEEEEEEE
T ss_pred             c---cccccceeeehhhhhcCchhHHHHHHHHHhhcC-CCCcEEEEEE
Confidence            4   3689999999988777 3  4789999999999 9999987544

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.56  E-value=7.8e-15  Score=117.09  Aligned_cols=104  Identities=19%  Similarity=0.191  Sum_probs=81.2

Q ss_pred             HHHHHHHHhh--CCCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHc------CCCceEEecCCccchh
Q 024647           21 EELFKFITSK--TTNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATK------LPNIRYELTSPAMSIA   89 (265)
Q Consensus        21 ~~l~~~l~~~--~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~   89 (265)
                      +.++..+...  .+++++|||||||+|..+..+++..   .+|+++|+++.+++.|++      ..|+.+..       +
T Consensus        61 P~~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~-------~  133 (213)
T d1dl5a1          61 PSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVC-------G  133 (213)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEE-------S
T ss_pred             chhhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhccccccccc-------C
Confidence            3444444444  3678999999999999999999864   369999999999999886      35777776       5


Q ss_pred             hhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647           90 ELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        90 d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      |..+....+++||+|++..+++++.     +++.+.|| |||++++..
T Consensus       134 d~~~~~~~~~~fD~I~~~~~~~~~p-----~~l~~~Lk-pGG~lv~pv  175 (213)
T d1dl5a1         134 DGYYGVPEFSPYDVIFVTVGVDEVP-----ETWFTQLK-EGGRVIVPI  175 (213)
T ss_dssp             CGGGCCGGGCCEEEEEECSBBSCCC-----HHHHHHEE-EEEEEEEEB
T ss_pred             chHHccccccchhhhhhhccHHHhH-----HHHHHhcC-CCcEEEEEE
Confidence            5555555677899999999988763     35678899 999998743

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.55  E-value=7.2e-15  Score=119.60  Aligned_cols=112  Identities=15%  Similarity=0.103  Sum_probs=79.4

Q ss_pred             hCCCCcHHHHHHHHhh-CCCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC-------CCceEEecC
Q 024647           15 TRPNYPEELFKFITSK-TTNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL-------PNIRYELTS   83 (265)
Q Consensus        15 ~rp~y~~~l~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~   83 (265)
                      ..+-||.+....+... ..++++|||+|||+|.+|..+++..   .+|+++|+++.+++.|++.       .|+.+..  
T Consensus        66 ~qiiypkD~~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~--  143 (250)
T d1yb2a1          66 TQIISEIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSR--  143 (250)
T ss_dssp             ---------------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEEC--
T ss_pred             CcccCHHHHHHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEE--
Confidence            4456776666555433 3688999999999999999999863   4799999999999998851       4666666  


Q ss_pred             CccchhhhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           84 PAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        84 ~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                           +|+.+. +++++||.|++.    ..++..+++++.++|| |||+++++.+.
T Consensus       144 -----~Di~~~-~~~~~fD~V~ld----~p~p~~~l~~~~~~LK-pGG~lv~~~P~  188 (250)
T d1yb2a1         144 -----SDIADF-ISDQMYDAVIAD----IPDPWNHVQKIASMMK-PGSVATFYLPN  188 (250)
T ss_dssp             -----SCTTTC-CCSCCEEEEEEC----CSCGGGSHHHHHHTEE-EEEEEEEEESS
T ss_pred             -----eeeecc-cccceeeeeeec----CCchHHHHHHHHHhcC-CCceEEEEeCC
Confidence                 566555 467899999874    3477899999999999 99999987765

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.6e-15  Score=124.22  Aligned_cols=107  Identities=16%  Similarity=0.040  Sum_probs=76.0

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC---CCceEEec-------------------------
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL---PNIRYELT-------------------------   82 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~---~~~~~~~~-------------------------   82 (265)
                      .++.+|||||||+|..+..++..+. +|+|+|+|+.|++.|++.   ....+...                         
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA  129 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhh
Confidence            3567899999999999888876654 799999999999998752   11111000                         


Q ss_pred             -----CCccchhhhhhccCCCCceeEEEeccccccC-----ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           83 -----SPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-----DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        83 -----~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-----~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                           ....+..+....+.+.++||+|++.+++|++     +...+++++.++|| |||.+++..+.
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~Lk-pGG~li~~~~~  195 (257)
T d2a14a1         130 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLK-PGGHLVTTVTL  195 (257)
T ss_dssp             HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEE-EEEEEEEEEES
T ss_pred             hhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccC-CCcEEEEEEec
Confidence                 0000001111234567899999999999987     24468999999999 99999987654

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.54  E-value=3.5e-14  Score=112.30  Aligned_cols=100  Identities=20%  Similarity=0.347  Sum_probs=82.3

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhccCCCCceeE
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQNVAAQSTVDL  103 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dl  103 (265)
                      +....|||||||+|.++..+++.++  .++|+|+++.++..|.+      .+|+.+..+++.    ++.+. +++.++|.
T Consensus        30 ~~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~----~l~~~-~~~~~~~~  104 (204)
T d1yzha1          30 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGS----DLTDY-FEDGEIDR  104 (204)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSS----CGGGT-SCTTCCSE
T ss_pred             CCCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHH----HHhhh-ccCCceeh
Confidence            4456799999999999999999876  49999999999997753      478999997662    23222 57889999


Q ss_pred             EEeccccccCCh---------hHHHHHHHHHhcCCCcEEEEEe
Q 024647          104 VTIAQAMHWFDL---------PQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       104 v~~~~~~~~~~~---------~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      |++.+.-.|...         ..+++.+.++|+ |||.|.+.+
T Consensus       105 i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~Lk-pgG~l~i~T  146 (204)
T d1yzha1         105 LYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILP-ENGEIHFKT  146 (204)
T ss_dssp             EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSC-TTCEEEEEE
T ss_pred             hcccccccccchhhhhhhhhHHHHHHHHHHhCC-CCcEEEEEE
Confidence            999998888832         479999999999 999998865

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.54  E-value=1.2e-14  Score=119.06  Aligned_cols=96  Identities=17%  Similarity=0.164  Sum_probs=75.6

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHc-------CCCceEEecCCccchhhhhhccCCCCcee
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATK-------LPNIRYELTSPAMSIAELEQNVAAQSTVD  102 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~-------~~~~~~~~~~~~~~~~d~~~~~~~~~~~D  102 (265)
                      .+..+|||||||+|..+..++++++  +++++|+ +.+++.+++       ..++.+..       +|+.+.  ...+||
T Consensus        79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~-------~D~~~~--~~~~~D  148 (253)
T d1tw3a2          79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVE-------GDFFEP--LPRKAD  148 (253)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEE-------CCTTSC--CSSCEE
T ss_pred             ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhcc-------ccchhh--cccchh
Confidence            3557899999999999999999976  5888998 567877764       14677777       454332  235799


Q ss_pred             EEEeccccccCC-h--hHHHHHHHHHhcCCCcEEEEEec
Q 024647          103 LVTIAQAMHWFD-L--PQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       103 lv~~~~~~~~~~-~--~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      +|++.+++|+++ .  .+++++++++|| |||.|++...
T Consensus       149 ~v~~~~vlh~~~d~~~~~~L~~~~~~Lk-PGG~l~i~e~  186 (253)
T d1tw3a2         149 AIILSFVLLNWPDHDAVRILTRCAEALE-PGGRILIHER  186 (253)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHTEE-EEEEEEEEEC
T ss_pred             heeeccccccCCchhhHHHHHHHHHhcC-CCcEEEEEec
Confidence            999999999873 3  368999999999 9999988654

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.2e-14  Score=115.22  Aligned_cols=103  Identities=17%  Similarity=0.230  Sum_probs=79.6

Q ss_pred             HHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC-----------CCceEEecCCccch
Q 024647           23 LFKFITSKTTNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL-----------PNIRYELTSPAMSI   88 (265)
Q Consensus        23 l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-----------~~~~~~~~~~~~~~   88 (265)
                      +++.|.....++++|||||||+|..|..+++..   .+|+++|+++++++.|++.           .++.+..       
T Consensus        66 ~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~-------  138 (224)
T d1i1na_          66 ALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVV-------  138 (224)
T ss_dssp             HHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEE-------
T ss_pred             HHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEE-------
Confidence            344444445788999999999999999998863   4799999999999988641           4566666       


Q ss_pred             hhhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647           89 AELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        89 ~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      +|......+.++||.|++..+++++.     +.+.+.|| |||++++...
T Consensus       139 gD~~~~~~~~~~fD~I~~~~~~~~ip-----~~l~~~Lk-pGG~LV~pv~  182 (224)
T d1i1na_         139 GDGRMGYAEEAPYDAIHVGAAAPVVP-----QALIDQLK-PGGRLILPVG  182 (224)
T ss_dssp             SCGGGCCGGGCCEEEEEECSBBSSCC-----HHHHHTEE-EEEEEEEEES
T ss_pred             eecccccchhhhhhhhhhhcchhhcC-----HHHHhhcC-CCcEEEEEEc
Confidence            56566556678999999999887653     35778999 9999998543

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.5e-14  Score=119.23  Aligned_cols=105  Identities=13%  Similarity=0.104  Sum_probs=73.1

Q ss_pred             CCCCeEEEEcCCcchhHHHHH-hcCCcEEEEcCCHHHHHHHHcC---CCceE----------------------------
Q 024647           32 TNHELAWDVGTGSGQAAASLS-GIFENVIGTETSPKQIEFATKL---PNIRY----------------------------   79 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~-~~~~~v~~vD~s~~~~~~a~~~---~~~~~----------------------------   79 (265)
                      .++.++||+|||+|.++...+ +.+.+|+|+|+|+.|++.+++.   ....+                            
T Consensus        53 ~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (263)
T d2g72a1          53 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  132 (263)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhh
Confidence            356799999999998876544 5667899999999999988741   10000                            


Q ss_pred             -----EecCCccchhhhhhccCCCCceeEEEeccccccC--C---hhHHHHHHHHHhcCCCcEEEEEec
Q 024647           80 -----ELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF--D---LPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        80 -----~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~--~---~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                           ...++. ....+...+..+++||+|++.+++|++  +   ...+++++.++|| |||.|++..+
T Consensus       133 ~~~~~~~~Dv~-~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~Lk-PGG~li~~~~  199 (263)
T d2g72a1         133 RVKRVLPIDVH-QPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLR-PGGHLLLIGA  199 (263)
T ss_dssp             HEEEEECCCTT-SSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEE-EEEEEEEEEE
T ss_pred             hhhcccccccc-CCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcC-CCCEEEEecc
Confidence                 000000 000111122345689999999999987  3   4578999999999 9999998665

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.49  E-value=4.1e-14  Score=116.36  Aligned_cols=112  Identities=21%  Similarity=0.238  Sum_probs=86.2

Q ss_pred             hCCCCcHHHHHHHHhh-CCCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC-------CCceEEecC
Q 024647           15 TRPNYPEELFKFITSK-TTNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL-------PNIRYELTS   83 (265)
Q Consensus        15 ~rp~y~~~l~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~   83 (265)
                      ..+.||.+..-.+... ..++++|||+|||+|.++..+++..   .+|+++|+++.+++.|++.       .++.+..  
T Consensus        84 ~qiiypkd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~--  161 (266)
T d1o54a_          84 TQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKV--  161 (266)
T ss_dssp             CCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEEC--
T ss_pred             ccccchHHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEe--
Confidence            5667887666554433 3688999999999999999999864   4799999999999999862       3444444  


Q ss_pred             CccchhhhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           84 PAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        84 ~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                           .|+... ++...+|.|+.    |..++..+++++.++|| |||.++++.+.
T Consensus       162 -----~d~~~~-~~~~~~D~V~~----d~p~p~~~l~~~~~~LK-pGG~lv~~~P~  206 (266)
T d1o54a_         162 -----RDISEG-FDEKDVDALFL----DVPDPWNYIDKCWEALK-GGGRFATVCPT  206 (266)
T ss_dssp             -----CCGGGC-CSCCSEEEEEE----CCSCGGGTHHHHHHHEE-EEEEEEEEESS
T ss_pred             -----cccccc-ccccceeeeEe----cCCCHHHHHHHHHhhcC-CCCEEEEEeCc
Confidence                 444332 45678999875    33488999999999999 99999998765

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.49  E-value=7.7e-14  Score=111.65  Aligned_cols=103  Identities=20%  Similarity=0.226  Sum_probs=79.9

Q ss_pred             HHHHHHHHhh--CCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc----CCCceEEecCCccchhhhhhc
Q 024647           21 EELFKFITSK--TTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK----LPNIRYELTSPAMSIAELEQN   94 (265)
Q Consensus        21 ~~l~~~l~~~--~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~----~~~~~~~~~~~~~~~~d~~~~   94 (265)
                      +.+...+.+.  ..++++|||||||+|.+|..|++...+|+++|+++.+++.|++    ..|+.+..       +|....
T Consensus        56 p~~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~-------~d~~~g  128 (224)
T d1vbfa_          56 LNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLIL-------GDGTLG  128 (224)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEE-------SCGGGC
T ss_pred             hhhHHHHHHHhhhcccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHhccccccccc-------Cchhhc
Confidence            3444444443  3678999999999999999999999999999999999998875    36777777       454443


Q ss_pred             cCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEE
Q 024647           95 VAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATW  136 (265)
Q Consensus        95 ~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~  136 (265)
                      ....++||.|++..+++.+.     +.+.+.|+ |||++++.
T Consensus       129 ~~~~~pfD~Iiv~~a~~~ip-----~~l~~qLk-~GGrLV~p  164 (224)
T d1vbfa_         129 YEEEKPYDRVVVWATAPTLL-----CKPYEQLK-EGGIMILP  164 (224)
T ss_dssp             CGGGCCEEEEEESSBBSSCC-----HHHHHTEE-EEEEEEEE
T ss_pred             chhhhhHHHHHhhcchhhhh-----HHHHHhcC-CCCEEEEE
Confidence            33567899999988877653     34567899 99999874

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.47  E-value=1.6e-13  Score=110.18  Aligned_cols=120  Identities=21%  Similarity=0.165  Sum_probs=89.5

Q ss_pred             HHhhhCCCCcHHHHHHHHhhC-----CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHc----CCCce
Q 024647           11 QYAETRPNYPEELFKFITSKT-----TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATK----LPNIR   78 (265)
Q Consensus        11 ~Y~~~rp~y~~~l~~~l~~~~-----~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~----~~~~~   78 (265)
                      .|..+-|.. .++...|....     +++++|||+|||+|.++..+++..   .+|+|+|+|+.|++.++.    ..++.
T Consensus        47 e~R~w~p~r-SKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~  125 (227)
T d1g8aa_          47 EYRIWNPNR-SKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIV  125 (227)
T ss_dssp             EEEECCTTT-CHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEE
T ss_pred             eEEEECCCc-cHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCce
Confidence            355666754 56666665432     578999999999999999999874   469999999999998764    46777


Q ss_pred             EEecCCccchhhhhhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647           79 YELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        79 ~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      .+..++    .+.+..+...+.+|+|++.  +++. +...+++++.+.|| |||.+++...
T Consensus       126 ~i~~d~----~~~~~~~~~~~~vD~i~~d--~~~~~~~~~~l~~~~~~Lk-pgG~lvi~~k  179 (227)
T d1g8aa_         126 PILGDA----TKPEEYRALVPKVDVIFED--VAQPTQAKILIDNAEVYLK-RGGYGMIAVK  179 (227)
T ss_dssp             EEECCT----TCGGGGTTTCCCEEEEEEC--CCSTTHHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred             EEEEEC----CCcccccccccceEEEEEE--ccccchHHHHHHHHHHhcc-cCCeEEEEEE
Confidence            777554    3444455555688988764  3333 56679999999999 9999987544

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.45  E-value=1.9e-13  Score=111.93  Aligned_cols=96  Identities=16%  Similarity=0.115  Sum_probs=74.9

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHc-------CCCceEEecCCccchhhhhhccCCCCcee
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATK-------LPNIRYELTSPAMSIAELEQNVAAQSTVD  102 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~-------~~~~~~~~~~~~~~~~d~~~~~~~~~~~D  102 (265)
                      ....+|||||||+|.++..++++++  +++++|+ +.+++.+++       ...+.+..       +|+.. +.+ .++|
T Consensus        80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~-------~d~~~-~~p-~~~D  149 (256)
T d1qzza2          80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAE-------GDFFK-PLP-VTAD  149 (256)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEE-------CCTTS-CCS-CCEE
T ss_pred             ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeee-------eeccc-ccc-ccch
Confidence            3557899999999999999999986  5899998 777877654       14566666       44332 233 4699


Q ss_pred             EEEeccccccCCh---hHHHHHHHHHhcCCCcEEEEEec
Q 024647          103 LVTIAQAMHWFDL---PQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       103 lv~~~~~~~~~~~---~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      +|++.+++|.++.   ..++++++++|| |||+|++...
T Consensus       150 ~v~~~~vLh~~~d~~~~~lL~~i~~~Lk-pgG~llI~d~  187 (256)
T d1qzza2         150 VVLLSFVLLNWSDEDALTILRGCVRALE-PGGRLLVLDR  187 (256)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEC
T ss_pred             hhhccccccccCcHHHHHHHHHHHhhcC-CcceeEEEEe
Confidence            9999999997743   367999999999 9999998665

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=5.3e-14  Score=119.41  Aligned_cols=110  Identities=14%  Similarity=0.166  Sum_probs=83.1

Q ss_pred             cHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHc---------------CCCceEE
Q 024647           20 PEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATK---------------LPNIRYE   80 (265)
Q Consensus        20 ~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~---------------~~~~~~~   80 (265)
                      ...++..+....  +++++|||+|||+|..+..+++..  .+++|||+|+.|++.|++               ..++.+.
T Consensus       136 ~~~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~  215 (328)
T d1nw3a_         136 SFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLE  215 (328)
T ss_dssp             CHHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEE
T ss_pred             HHHHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEE
Confidence            344445554443  577899999999999999998764  369999999999998763               2467788


Q ss_pred             ecCCccchhhhhhccCCCC--ceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647           81 LTSPAMSIAELEQNVAAQS--TVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        81 ~~~~~~~~~d~~~~~~~~~--~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      +       +|+.+.++.+.  .+|+|+++...|+-+....+.++.++|| |||.+++..
T Consensus       216 ~-------gd~~~~~~~~~~~~advi~~~~~~f~~~~~~~l~e~~r~LK-pGg~iv~~~  266 (328)
T d1nw3a_         216 R-------GDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMK-EGGRIVSSK  266 (328)
T ss_dssp             E-------CCTTSHHHHHHHHHCSEEEECCTTTCHHHHHHHHHHHTTCC-TTCEEEESS
T ss_pred             E-------CcccccccccccCcceEEEEcceecchHHHHHHHHHHHhCC-CCcEEEEec
Confidence            7       55555543333  2578888777666688899999999999 999998743

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2e-13  Score=115.00  Aligned_cols=114  Identities=19%  Similarity=0.252  Sum_probs=85.3

Q ss_pred             hCCCCcHHHHHHHHhh-CCCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC----------------
Q 024647           15 TRPNYPEELFKFITSK-TTNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL----------------   74 (265)
Q Consensus        15 ~rp~y~~~l~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~----------------   74 (265)
                      ..+.||.+....+... ..++++|||+|||+|.+|..|++..   .+|+++|+++.+++.|++.                
T Consensus        79 tqiiypkD~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~  158 (324)
T d2b25a1          79 TAITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEW  158 (324)
T ss_dssp             SCCCCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCC
T ss_pred             CcccccccHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhcc
Confidence            4557888877666554 3688999999999999999999863   3699999999999998741                


Q ss_pred             -CCceEEecCCccchhhhhhcc--CCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecCC
Q 024647           75 -PNIRYELTSPAMSIAELEQNV--AAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTV  140 (265)
Q Consensus        75 -~~~~~~~~~~~~~~~d~~~~~--~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~~  140 (265)
                       .|+.+..       +|+....  .++.+||.|+..    ..+|..++.++.++|| |||.|+++.+.-
T Consensus       159 ~~nv~~~~-------~di~~~~~~~~~~~fD~V~LD----~p~P~~~l~~~~~~LK-pGG~lv~~~P~i  215 (324)
T d2b25a1         159 PDNVDFIH-------KDISGATEDIKSLTFDAVALD----MLNPHVTLPVFYPHLK-HGGVCAVYVVNI  215 (324)
T ss_dssp             CCCEEEEE-------SCTTCCC-------EEEEEEC----SSSTTTTHHHHGGGEE-EEEEEEEEESSH
T ss_pred             ccceeEEe-------cchhhcccccCCCCcceEeec----CcCHHHHHHHHHHhcc-CCCEEEEEeCCH
Confidence             3566666       4444432  356789999864    2366789999999999 999999987653

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.43  E-value=1.9e-13  Score=116.02  Aligned_cols=94  Identities=21%  Similarity=0.223  Sum_probs=75.9

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHc-------CCCceEEecCCccchhhhhhccCCCCceeE
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATK-------LPNIRYELTSPAMSIAELEQNVAAQSTVDL  103 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~-------~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dl  103 (265)
                      .++++|||||||+|.++..++++++ +|+|+|.|+ ++..|++       ..++.++.       +++.++++++++||+
T Consensus        37 ~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~-------~~~~~l~~~~~~~D~  108 (328)
T d1g6q1_          37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLR-------GKLEDVHLPFPKVDI  108 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEE-------SCTTTSCCSSSCEEE
T ss_pred             CCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEE-------eehhhccCcccceeE
Confidence            3678999999999999999999986 699999997 4555443       24677777       666778888899999


Q ss_pred             EEeccccccC----ChhHHHHHHHHHhcCCCcEEE
Q 024647          104 VTIAQAMHWF----DLPQFYNQVKWVLKKPNGVIA  134 (265)
Q Consensus       104 v~~~~~~~~~----~~~~~l~~~~~~Lk~pgG~l~  134 (265)
                      |++....+.+    ....++..+.++|| |||.++
T Consensus       109 i~se~~~~~~~~e~~~~~~~~a~~r~Lk-pgG~ii  142 (328)
T d1g6q1_         109 IISEWMGYFLLYESMMDTVLYARDHYLV-EGGLIF  142 (328)
T ss_dssp             EEECCCBTTBSTTCCHHHHHHHHHHHEE-EEEEEE
T ss_pred             EEEEecceeeccchhHHHHHHHHHhccC-CCeEEE
Confidence            9998766554    35678889999999 999886

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=2.5e-13  Score=114.70  Aligned_cols=95  Identities=19%  Similarity=0.141  Sum_probs=76.6

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhccCCCCceeEE
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQNVAAQSTVDLV  104 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv  104 (265)
                      .++++|||||||+|.++..+++.++ +|+|+|.|+.+....+.      ..++.+..       +++++++.+.+++|+|
T Consensus        32 ~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~-------~~~~~~~~~~~~~D~i  104 (316)
T d1oria_          32 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIK-------GKVEEVELPVEKVDII  104 (316)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEE-------SCTTTCCCSSSCEEEE
T ss_pred             CCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEe-------ccHHHcccccceeEEE
Confidence            3678899999999999999999986 69999999865443321      24577777       6677788888899999


Q ss_pred             EeccccccC----ChhHHHHHHHHHhcCCCcEEE
Q 024647          105 TIAQAMHWF----DLPQFYNQVKWVLKKPNGVIA  134 (265)
Q Consensus       105 ~~~~~~~~~----~~~~~l~~~~~~Lk~pgG~l~  134 (265)
                      ++....|.+    ..+.++..+.++|+ |||.++
T Consensus       105 vs~~~~~~l~~e~~~~~~l~~~~r~Lk-p~G~ii  137 (316)
T d1oria_         105 ISEWMGYCLFYESMLNTVLHARDKWLA-PDGLIF  137 (316)
T ss_dssp             EECCCBBTBTBTCCHHHHHHHHHHHEE-EEEEEE
T ss_pred             eeeeeeeeeccHHHHHHHHHHHHhcCC-CCeEEE
Confidence            998776655    35678999999999 999886

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=3e-13  Score=113.90  Aligned_cols=95  Identities=16%  Similarity=0.131  Sum_probs=77.2

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhccCCCCceeEE
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQNVAAQSTVDLV  104 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv  104 (265)
                      .++++|||||||+|.++..+++.++ +|+|+|.|+.|+..++.      ..++.+..       +++++++.+.++||+|
T Consensus        34 ~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~-------~~~~~l~~~~~~~D~I  106 (311)
T d2fyta1          34 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIK-------GKIEEVHLPVEKVDVI  106 (311)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEE-------SCTTTSCCSCSCEEEE
T ss_pred             CCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEE-------eeHHHhcCccccceEE
Confidence            4678999999999999999999986 69999999998754432      25677777       6678888888899999


Q ss_pred             EeccccccCC----hhHHHHHHHHHhcCCCcEEE
Q 024647          105 TIAQAMHWFD----LPQFYNQVKWVLKKPNGVIA  134 (265)
Q Consensus       105 ~~~~~~~~~~----~~~~l~~~~~~Lk~pgG~l~  134 (265)
                      ++....|...    .+.++....+.|+ |||.++
T Consensus       107 vse~~~~~~~~e~~~~~~~~a~~~~Lk-p~G~ii  139 (311)
T d2fyta1         107 ISEWMGYFLLFESMLDSVLYAKNKYLA-KGGSVY  139 (311)
T ss_dssp             EECCCBTTBTTTCHHHHHHHHHHHHEE-EEEEEE
T ss_pred             EEeeeeeecccccccHHHHHHHHhcCC-CCcEEe
Confidence            9988777653    3467777889999 999987

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.34  E-value=1.5e-13  Score=118.83  Aligned_cols=112  Identities=12%  Similarity=0.115  Sum_probs=75.9

Q ss_pred             HHHHHHHhh--CCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC---------------CCceEEec
Q 024647           22 ELFKFITSK--TTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL---------------PNIRYELT   82 (265)
Q Consensus        22 ~l~~~l~~~--~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~---------------~~~~~~~~   82 (265)
                      .++..+...  .++++++||||||+|..+..++..+  ++++|||+|+.|++.|++.               ....+...
T Consensus       203 ~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~  282 (406)
T d1u2za_         203 NFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK  282 (406)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred             HHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeee
Confidence            344444444  3678999999999999999999763  4799999999999998742               11222111


Q ss_pred             CCccchhhhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647           83 SPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        83 ~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                       ..+...+....  .-..+|+|+++..+|..+....+.++.+.|| |||.|++..
T Consensus       283 -~~f~~~~~~d~--~~~~adVV~inn~~f~~~l~~~L~ei~r~LK-PGGrIVs~~  333 (406)
T d1u2za_         283 -KSFVDNNRVAE--LIPQCDVILVNNFLFDEDLNKKVEKILQTAK-VGCKIISLK  333 (406)
T ss_dssp             -SCSTTCHHHHH--HGGGCSEEEECCTTCCHHHHHHHHHHHTTCC-TTCEEEESS
T ss_pred             -echhhcccccc--ccccceEEEEecccCchHHHHHHHHHHHhcC-CCcEEEEec
Confidence             00000111111  1135789998776665588899999999999 999998743

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.33  E-value=1.2e-12  Score=104.77  Aligned_cols=96  Identities=13%  Similarity=0.119  Sum_probs=75.0

Q ss_pred             hCCCCCeEEEEcCCcchhHHHHHhcC--------CcEEEEcCCHHHHHHHHc-----------CCCceEEecCCccchhh
Q 024647           30 KTTNHELAWDVGTGSGQAAASLSGIF--------ENVIGTETSPKQIEFATK-----------LPNIRYELTSPAMSIAE   90 (265)
Q Consensus        30 ~~~~~~~vlDvGcG~G~~~~~l~~~~--------~~v~~vD~s~~~~~~a~~-----------~~~~~~~~~~~~~~~~d   90 (265)
                      ...++++|||||||+|..|..+++..        .+|+++|+++++++.|++           ..|+.+..       +|
T Consensus        77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~-------~d  149 (223)
T d1r18a_          77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE-------GD  149 (223)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE-------SC
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEe-------cc
Confidence            45678999999999999999988753        379999999999998864           14777887       45


Q ss_pred             hhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647           91 LEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        91 ~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      ......+.++||.|++..+++.+.     +.+.+.|+ |||++++...
T Consensus       150 ~~~~~~~~~~fD~Iiv~~a~~~~p-----~~l~~~Lk-~gG~lV~pvg  191 (223)
T d1r18a_         150 GRKGYPPNAPYNAIHVGAAAPDTP-----TELINQLA-SGGRLIVPVG  191 (223)
T ss_dssp             GGGCCGGGCSEEEEEECSCBSSCC-----HHHHHTEE-EEEEEEEEES
T ss_pred             cccccccccceeeEEEEeechhch-----HHHHHhcC-CCcEEEEEEe
Confidence            455445667899999998876543     34678999 9999987543

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.29  E-value=1.6e-11  Score=94.21  Aligned_cols=117  Identities=15%  Similarity=0.210  Sum_probs=82.5

Q ss_pred             hCCCCcH----HHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC-----CCceEEecCCc
Q 024647           15 TRPNYPE----ELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL-----PNIRYELTSPA   85 (265)
Q Consensus        15 ~rp~y~~----~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~   85 (265)
                      .||+ ++    .++++|.....++.+|||+|||+|.++..++.++++++++|.|+.+++.+++.     -+.+.....  
T Consensus        20 ~Rpt-~~~v~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~--   96 (171)
T d1ws6a1          20 ARPS-PVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALP--   96 (171)
T ss_dssp             CCCC-CHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSC--
T ss_pred             CCCC-cHHHHHHHHHHhhccccCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHHHhhccccceeeee--
Confidence            5786 34    34556777777888999999999999999999999999999999999988752     122333322  


Q ss_pred             cchhhh--hhccCCCCceeEEEeccccccCChhHHHHHHH--HHhcCCCcEEEEEecC
Q 024647           86 MSIAEL--EQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVK--WVLKKPNGVIATWCYT  139 (265)
Q Consensus        86 ~~~~d~--~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~--~~Lk~pgG~l~~~~~~  139 (265)
                         +|.  .......++||+|++.-..+. +....+.++.  .+|+ |||.+++....
T Consensus        97 ---~d~~~~~~~~~~~~fD~If~DPPY~~-~~~~~l~~l~~~~ll~-~~g~ivie~~~  149 (171)
T d1ws6a1          97 ---VEVFLPEAKAQGERFTVAFMAPPYAM-DLAALFGELLASGLVE-AGGLYVLQHPK  149 (171)
T ss_dssp             ---HHHHHHHHHHTTCCEEEEEECCCTTS-CTTHHHHHHHHHTCEE-EEEEEEEEEET
T ss_pred             ---hhcccccccccCCccceeEEcccccc-CHHHHHHHHHHcCCcC-CCeEEEEEecC
Confidence               232  222345678999999876553 4344455443  4689 99998876543

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=9.6e-12  Score=102.11  Aligned_cols=112  Identities=19%  Similarity=0.269  Sum_probs=83.5

Q ss_pred             CCCCcHHHHHHHHhhC-CCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHc------CCCceEEecCCcc
Q 024647           16 RPNYPEELFKFITSKT-TNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATK------LPNIRYELTSPAM   86 (265)
Q Consensus        16 rp~y~~~l~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~   86 (265)
                      ||. ++.+++...... ..+.+|||+|||+|..+..++...+  +|+++|+|+.+++.|++      ..++++..     
T Consensus        91 Rpe-TE~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~-----  164 (274)
T d2b3ta1          91 RPD-TECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQ-----  164 (274)
T ss_dssp             CTT-HHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEEC-----
T ss_pred             ccc-hhhhhhhHhhhhcccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeee-----
Confidence            444 666787776654 4567899999999999999998775  69999999999999886      24677777     


Q ss_pred             chhhhhhccCCCCceeEEEeccccc----------c--CC--------------hhHHHHHHHHHhcCCCcEEEEEe
Q 024647           87 SIAELEQNVAAQSTVDLVTIAQAMH----------W--FD--------------LPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        87 ~~~d~~~~~~~~~~~Dlv~~~~~~~----------~--~~--------------~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                        +|+-+ +.++++||+|+++-..-          .  .+              ..++++++.+.|+ |||.+++..
T Consensus       165 --~d~~~-~~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~-~~G~l~lEi  237 (274)
T d2b3ta1         165 --SDWFS-ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALV-SGGFLLLEH  237 (274)
T ss_dssp             --CSTTG-GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEE-EEEEEEEEC
T ss_pred             --ccccc-ccCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcC-CCCEEEEEE
Confidence              44433 23567999999985321          0  11              1257888899999 999999854

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.27  E-value=1e-11  Score=98.51  Aligned_cols=104  Identities=21%  Similarity=0.264  Sum_probs=78.9

Q ss_pred             HHHHHHHHhh--CCCCCeEEEEcCCcchhHHHHHhcC-CcEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhh
Q 024647           21 EELFKFITSK--TTNHELAWDVGTGSGQAAASLSGIF-ENVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAEL   91 (265)
Q Consensus        21 ~~l~~~l~~~--~~~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~   91 (265)
                      +.+...+.+.  ..++.+|||||||+|..+..+++.. .+|+++|.++.+++.|++      ..|+.+..       +|.
T Consensus        64 P~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~-------gd~  136 (215)
T d1jg1a_          64 PHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVIL-------GDG  136 (215)
T ss_dssp             HHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEE-------SCG
T ss_pred             hhhHHHHHHhhccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEE-------Ccc
Confidence            3444444443  3678899999999999999999874 579999999999998875      37888888       454


Q ss_pred             hhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647           92 EQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        92 ~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      .......++||.|++..+++.+. ..    +.+.|+ |||++++..
T Consensus       137 ~~g~~~~~pfD~Iiv~~a~~~ip-~~----l~~qL~-~gGrLv~pv  176 (215)
T d1jg1a_         137 SKGFPPKAPYDVIIVTAGAPKIP-EP----LIEQLK-IGGKLIIPV  176 (215)
T ss_dssp             GGCCGGGCCEEEEEECSBBSSCC-HH----HHHTEE-EEEEEEEEE
T ss_pred             ccCCcccCcceeEEeecccccCC-HH----HHHhcC-CCCEEEEEE
Confidence            44444678999999988877543 33    456699 999998743

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.26  E-value=8.2e-12  Score=105.12  Aligned_cols=115  Identities=21%  Similarity=0.159  Sum_probs=82.9

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhh-hhccCCCCceeEE
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAEL-EQNVAAQSTVDLV  104 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~-~~~~~~~~~~Dlv  104 (265)
                      .++.+|||++||+|.++..++..+.+|+++|+|+.+++.+++      ..++.++..++    .++ +.+....++||+|
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~----~~~~~~~~~~~~~fD~V  219 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANA----FDLLRRLEKEGERFDLV  219 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCH----HHHHHHHHHTTCCEEEE
T ss_pred             hCCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccH----HHHhhhhHhhhcCCCEE
Confidence            457899999999999999998777799999999999999875      35777877554    222 2233456789999


Q ss_pred             EeccccccC----------ChhHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHhh
Q 024647          105 TIAQAMHWF----------DLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVF  151 (265)
Q Consensus       105 ~~~~~~~~~----------~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~  151 (265)
                      ++.....-.          +...++..+.++|+ |||.|++.+.........+.++.
T Consensus       220 i~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLk-pGG~Lv~~scs~~~~~~~f~~~v  275 (318)
T d1wxxa2         220 VLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLK-EGGILATASCSHHMTEPLFYAMV  275 (318)
T ss_dssp             EECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEE-EEEEEEEEECCTTSCHHHHHHHH
T ss_pred             EEcCCccccchHHHHHHHHHHHHHHHHHHHHcC-CCCEEEEEeCCcccCHHHHHHHH
Confidence            987532111          12357888999999 99999987765433234444433

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.25  E-value=1.2e-11  Score=96.41  Aligned_cols=119  Identities=16%  Similarity=0.260  Sum_probs=91.0

Q ss_pred             hhCCCCcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHc-----CCCceEEecCCcc
Q 024647           14 ETRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATK-----LPNIRYELTSPAM   86 (265)
Q Consensus        14 ~~rp~y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~-----~~~~~~~~~~~~~   86 (265)
                      ++.|..-+++++++.  ..++..+||++||+|..+..+++++  .+|+|+|.++.|++.+++     ..++.+...+.  
T Consensus         6 ~H~pVll~evi~~l~--~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f--   81 (192)
T d1m6ya2           6 RHIPVMVREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSY--   81 (192)
T ss_dssp             SCCCTTHHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCG--
T ss_pred             CCCchHHHHHHHhhC--CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHH--
Confidence            377888888888884  3567899999999999999999875  479999999999999975     24677777554  


Q ss_pred             chhhhhhc--cCCCCceeEEEecccc--c-------cC-ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           87 SIAELEQN--VAAQSTVDLVTIAQAM--H-------WF-DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        87 ~~~d~~~~--~~~~~~~Dlv~~~~~~--~-------~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                        .++...  ....++||.|+....+  +       -+ .....+..+.++|+ |||.+++..+.
T Consensus        82 --~~~~~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk-~gG~l~ii~f~  143 (192)
T d1m6ya2          82 --READFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLN-PGGRIVVISFH  143 (192)
T ss_dssp             --GGHHHHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEE-EEEEEEEEESS
T ss_pred             --hhHHHHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcC-CCCeeeeeccc
Confidence              222221  2345789999987654  1       12 24478999999999 99999987775

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.24  E-value=1.4e-11  Score=103.95  Aligned_cols=124  Identities=18%  Similarity=0.097  Sum_probs=86.9

Q ss_pred             HHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhh
Q 024647           22 ELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQ   93 (265)
Q Consensus        22 ~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~   93 (265)
                      ....++.....++.+|||+|||+|.++..++..++ +|+++|+|+.+++.+++.       .++++..+++.   ..+..
T Consensus       134 ~~r~~~~~~~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~---~~~~~  210 (324)
T d2as0a2         134 ENRLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAF---EEMEK  210 (324)
T ss_dssp             HHHHHHGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHH---HHHHH
T ss_pred             hHHHHHHhhcCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhh---hhhHH
Confidence            33446666667889999999999999999998876 699999999999998751       35677774431   11222


Q ss_pred             ccCCCCceeEEEeccccccC----------ChhHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHH
Q 024647           94 NVAAQSTVDLVTIAQAMHWF----------DLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDA  149 (265)
Q Consensus        94 ~~~~~~~~Dlv~~~~~~~~~----------~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~  149 (265)
                      +....++||+|++.....-.          +...++..+.++|+ |||.|++.+.....-...+.+
T Consensus       211 ~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~-pGG~lv~~s~s~~~~~~~f~~  275 (324)
T d2as0a2         211 LQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVK-DGGILVTCSCSQHVDLQMFKD  275 (324)
T ss_dssp             HHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEE-EEEEEEEEECCTTSCHHHHHH
T ss_pred             HHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcC-CCcEEEEEeCCccCCHHHHHH
Confidence            33356789999986532211          12357888899999 999999877654332334433

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.19  E-value=1.7e-11  Score=92.17  Aligned_cols=110  Identities=15%  Similarity=0.038  Sum_probs=77.9

Q ss_pred             HHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhh
Q 024647           21 EELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELE   92 (265)
Q Consensus        21 ~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~   92 (265)
                      +.++++|.... .+.+|||+|||+|.++..++.+++ +|+++|.++.+++.+++.       .++.+.+       +|+.
T Consensus         3 e~~fn~l~~~~-~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~-------~D~~   74 (152)
T d2esra1           3 GAIFNMIGPYF-NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLK-------MEAE   74 (152)
T ss_dssp             HHHHHHHCSCC-CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEEC-------SCHH
T ss_pred             HHHHHHHHhhC-CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhc-------cccc
Confidence            35667776543 468899999999999999988886 799999999999987751       2356666       4443


Q ss_pred             h-ccCCCCceeEEEeccccccCChhHHHHHHH--HHhcCCCcEEEEEecC
Q 024647           93 Q-NVAAQSTVDLVTIAQAMHWFDLPQFYNQVK--WVLKKPNGVIATWCYT  139 (265)
Q Consensus        93 ~-~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~--~~Lk~pgG~l~~~~~~  139 (265)
                      . +....++||+|++......-.....++.+.  +.|+ |||.+++....
T Consensus        75 ~~l~~~~~~fDiIf~DPPy~~~~~~~~l~~i~~~~~L~-~~g~iiiE~~~  123 (152)
T d2esra1          75 RAIDCLTGRFDLVFLDPPYAKETIVATIEALAAKNLLS-EQVMVVCETDK  123 (152)
T ss_dssp             HHHHHBCSCEEEEEECCSSHHHHHHHHHHHHHHTTCEE-EEEEEEEEEET
T ss_pred             ccccccccccceeEechhhccchHHHHHHHHHHCCCcC-CCeEEEEEeCC
Confidence            3 233567899999875433222345555553  5699 89999886543

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.17  E-value=6.7e-11  Score=92.25  Aligned_cols=69  Identities=19%  Similarity=0.243  Sum_probs=57.3

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHc-CCCceEEecCCccchhhhhhccCCCCceeEEEecccc
Q 024647           33 NHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATK-LPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAM  110 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~  110 (265)
                      .+++|||+|||+|.++..++..++ +|+|+|+++.+++.|++ ..++++.+       +|+.++   +++||+|+++-.+
T Consensus        48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~~~~~~~-------~D~~~l---~~~fD~Vi~NPPf  117 (197)
T d1ne2a_          48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMV-------ADVSEI---SGKYDTWIMNPPF  117 (197)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEE-------CCGGGC---CCCEEEEEECCCC
T ss_pred             CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccccccEEE-------Eehhhc---CCcceEEEeCccc
Confidence            578999999999999999988876 59999999999999986 46788887       555554   3689999998665


Q ss_pred             c
Q 024647          111 H  111 (265)
Q Consensus       111 ~  111 (265)
                      .
T Consensus       118 g  118 (197)
T d1ne2a_         118 G  118 (197)
T ss_dssp             -
T ss_pred             c
Confidence            3

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.16  E-value=6.1e-11  Score=96.79  Aligned_cols=101  Identities=14%  Similarity=0.141  Sum_probs=78.6

Q ss_pred             HHHhhCCCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCC
Q 024647           26 FITSKTTNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAA   97 (265)
Q Consensus        26 ~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~   97 (265)
                      ++.....++.+|||+|||+|.++..++++++ +|+++|+|+.+++.+++.       ..+.+.+       +|+.++. +
T Consensus       100 ri~~~~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~-------~D~~~~~-~  171 (260)
T d2frna1         100 RMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYN-------MDNRDFP-G  171 (260)
T ss_dssp             HHHHHCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEEC-------SCTTTCC-C
T ss_pred             HHHhhcCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEE-------cchHHhc-c
Confidence            4555667889999999999999999998874 899999999999988751       2366666       5655553 4


Q ss_pred             CCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647           98 QSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        98 ~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      .+.||.|+++..-   ....++..+.++|+ +||++.+...
T Consensus       172 ~~~~D~Ii~~~p~---~~~~~l~~a~~~l~-~gG~lh~~~~  208 (260)
T d2frna1         172 ENIADRILMGYVV---RTHEFIPKALSIAK-DGAIIHYHNT  208 (260)
T ss_dssp             CSCEEEEEECCCS---SGGGGHHHHHHHEE-EEEEEEEEEE
T ss_pred             CCCCCEEEECCCC---chHHHHHHHHhhcC-CCCEEEEEec
Confidence            5789999976321   34568899999999 9999876443

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=1.5e-10  Score=89.54  Aligned_cols=115  Identities=14%  Similarity=0.094  Sum_probs=80.0

Q ss_pred             hCCCCcHHH----HHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHc------CCCceEEecC
Q 024647           15 TRPNYPEEL----FKFITSKTTNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATK------LPNIRYELTS   83 (265)
Q Consensus        15 ~rp~y~~~l----~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~------~~~~~~~~~~   83 (265)
                      .||+ ++.+    +++|... -.+.+|||++||+|.++..++.+++ +|+.||.++..++.+++      ..+..+...+
T Consensus        23 ~RPt-~~~vre~lfn~l~~~-~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d  100 (183)
T d2fpoa1          23 LRPT-TDRVRETLFNWLAPV-IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSN  100 (183)
T ss_dssp             -----CHHHHHHHHHHHHHH-HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSC
T ss_pred             cCcC-cHHHHHHHHhhhhcc-cchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeec
Confidence            6887 5444    4444433 3457899999999999999999987 59999999999998875      2455555533


Q ss_pred             CccchhhhhhccCCCCceeEEEeccccccCChhHHHHHHHH--HhcCCCcEEEEEec
Q 024647           84 PAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKW--VLKKPNGVIATWCY  138 (265)
Q Consensus        84 ~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~--~Lk~pgG~l~~~~~  138 (265)
                      +      +..+.....+||+|++.-....-.....+..+.+  +|+ ++|.+++...
T Consensus       101 ~------~~~l~~~~~~fDlIf~DPPY~~~~~~~~l~~l~~~~~L~-~~~iIiiE~~  150 (183)
T d2fpoa1         101 A------MSFLAQKGTPHNIVFVDPPFRRGLLEETINLLEDNGWLA-DEALIYVESE  150 (183)
T ss_dssp             H------HHHHSSCCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEE-EEEEEEEEEE
T ss_pred             c------cccccccccccCEEEEcCccccchHHHHHHHHHHCCCCC-CCeEEEEEec
Confidence            2      2223345678999999876554455667777655  599 8999988654

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.11  E-value=1.9e-10  Score=89.81  Aligned_cols=103  Identities=17%  Similarity=0.291  Sum_probs=67.9

Q ss_pred             CCCCeEEEEcCCcchhHHHH----HhcC----C--cEEEEcCCHHHHHHHHcC-------CC-------ceEEecCCc--
Q 024647           32 TNHELAWDVGTGSGQAAASL----SGIF----E--NVIGTETSPKQIEFATKL-------PN-------IRYELTSPA--   85 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l----~~~~----~--~v~~vD~s~~~~~~a~~~-------~~-------~~~~~~~~~--   85 (265)
                      .++-+||++|||+|.-+..+    .+..    .  +|+|+|+|+.+++.|+..       .+       -.|......  
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~  102 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE  102 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred             CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence            44568999999999754433    3321    1  599999999999999741       00       011111000  


Q ss_pred             ----c----------chhh-hhhccCCCCceeEEEeccccccCChh---HHHHHHHHHhcCCCcEEEE
Q 024647           86 ----M----------SIAE-LEQNVAAQSTVDLVTIAQAMHWFDLP---QFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus        86 ----~----------~~~d-~~~~~~~~~~~Dlv~~~~~~~~~~~~---~~l~~~~~~Lk~pgG~l~~  135 (265)
                          +          ...+ ....+.+.+.||+|+|.+++++++++   ++++++.+.|+ |||.|++
T Consensus       103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~-pGG~L~l  169 (193)
T d1af7a2         103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLK-PDGLLFA  169 (193)
T ss_dssp             SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEE-EEEEEEE
T ss_pred             ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhC-CCcEEEE
Confidence                0          0000 11112245789999999999999754   79999999999 9999876

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.09  E-value=2.5e-10  Score=88.18  Aligned_cols=120  Identities=18%  Similarity=0.126  Sum_probs=86.1

Q ss_pred             hCCCCcHHHHHHHHhhC---CCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC-------CCceEEecC
Q 024647           15 TRPNYPEELFKFITSKT---TNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL-------PNIRYELTS   83 (265)
Q Consensus        15 ~rp~y~~~l~~~l~~~~---~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~~   83 (265)
                      .||+ ++.+-+.+-+.+   ..+.+|||++||+|.++...+.+++ +|++||.++.+++.+++.       .++++...+
T Consensus        21 ~RPt-~~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D   99 (182)
T d2fhpa1          21 TRPT-TDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMD   99 (182)
T ss_dssp             SCCC-CHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESC
T ss_pred             cCcC-cHHHHHHHHHHHHHhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhccccccccccc
Confidence            6887 555555554432   3568999999999999999999988 599999999999988752       356667644


Q ss_pred             CccchhhhhhccCCCCceeEEEeccccccCChhHHHHHHHH--HhcCCCcEEEEEecC
Q 024647           84 PAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKW--VLKKPNGVIATWCYT  139 (265)
Q Consensus        84 ~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~--~Lk~pgG~l~~~~~~  139 (265)
                      +.   .-++.+.....+||+|++.-..+.-+....+..+..  .|+ ++|.+++....
T Consensus       100 ~~---~~l~~~~~~~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~-~~giIi~E~~~  153 (182)
T d2fhpa1         100 AN---RALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLT-NEAVIVCETDK  153 (182)
T ss_dssp             HH---HHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEE-EEEEEEEEEET
T ss_pred             ch---hhhhhhcccCCCcceEEechhhhhhHHHHHHHHHHHCCCCC-CCEEEEEEcCC
Confidence            31   112222224568999999876655566677887754  699 99998875543

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.07  E-value=2.4e-10  Score=95.85  Aligned_cols=123  Identities=9%  Similarity=0.019  Sum_probs=85.4

Q ss_pred             HHHHhhCCCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHc------C--CCceEEecCCccchhhhhhcc
Q 024647           25 KFITSKTTNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATK------L--PNIRYELTSPAMSIAELEQNV   95 (265)
Q Consensus        25 ~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~------~--~~~~~~~~~~~~~~~d~~~~~   95 (265)
                      .++.....++.+|||+.||+|.++..++..++ +|++||+|+.+++.+++      .  .++.++..++.   .-+..+.
T Consensus       136 ~~l~~~~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~---~~l~~~~  212 (317)
T d2b78a2         136 NELINGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVF---DYFKYAR  212 (317)
T ss_dssp             HHHHHTTTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHH---HHHHHHH
T ss_pred             HHHHHHhhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHH---HHHHHHH
Confidence            45556667788999999999999999888777 69999999999998874      1  35677775441   1112232


Q ss_pred             CCCCceeEEEeccc-c-------cc-C-ChhHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHhh
Q 024647           96 AAQSTVDLVTIAQA-M-------HW-F-DLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVF  151 (265)
Q Consensus        96 ~~~~~~Dlv~~~~~-~-------~~-~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~  151 (265)
                      ...++||+|++.-. +       +- . +..+++..+.++|+ |||.|++.+.....-...+..+.
T Consensus       213 ~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~-pgG~l~~~scs~~~~~~~f~~~v  277 (317)
T d2b78a2         213 RHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILS-ENGLIIASTNAANMTVSQFKKQI  277 (317)
T ss_dssp             HTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEE-EEEEEEEEECCTTSCHHHHHHHH
T ss_pred             hhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcC-CCCEEEEEeCCccCCHHHHHHHH
Confidence            34568999998642 1       00 1 23468888999999 99999987765333234444433

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.07  E-value=5.2e-10  Score=87.72  Aligned_cols=93  Identities=13%  Similarity=0.120  Sum_probs=65.0

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC-----CCceEEecCCccchhhhhhccCCCCceeEEEe
Q 024647           33 NHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL-----PNIRYELTSPAMSIAELEQNVAAQSTVDLVTI  106 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~  106 (265)
                      .+.+|||+|||+|.++..++.+++ +|+|+|+|+.+++.+++.     .+..+..       +|+..+   ++.||+|++
T Consensus        46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~-------~d~~~~---~~~fD~Vi~  115 (201)
T d1wy7a1          46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFI-------GDVSEF---NSRVDIVIM  115 (201)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEE-------SCGGGC---CCCCSEEEE
T ss_pred             CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEE-------Cchhhh---CCcCcEEEE
Confidence            578999999999999999988886 799999999999998752     2444554       455444   467999999


Q ss_pred             ccccccCChhHHHHHHHHHhcCCCcEEEEE
Q 024647          107 AQAMHWFDLPQFYNQVKWVLKKPNGVIATW  136 (265)
Q Consensus       107 ~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~  136 (265)
                      +-.+.......-...+...+. +++.+...
T Consensus       116 nPP~~~~~~~~d~~~l~~~~~-~~~~v~~i  144 (201)
T d1wy7a1         116 NPPFGSQRKHADRPFLLKAFE-ISDVVYSI  144 (201)
T ss_dssp             CCCCSSSSTTTTHHHHHHHHH-HCSEEEEE
T ss_pred             cCccccccccccHHHHHHHHh-hcccchhc
Confidence            987665422222222334455 55555443

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.05  E-value=2.8e-10  Score=91.95  Aligned_cols=94  Identities=21%  Similarity=0.260  Sum_probs=74.0

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecccc
Q 024647           33 NHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAM  110 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~  110 (265)
                      ...+|||||||+|.++..++++++  +++..|. |..++.+....++.+..       +|+-+ +.|  ..|++++.+++
T Consensus        81 ~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~~~~ri~~~~-------gd~~~-~~p--~~D~~~l~~vL  149 (244)
T d1fp1d2          81 GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPLSGIEHVG-------GDMFA-SVP--QGDAMILKAVC  149 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEE-------CCTTT-CCC--CEEEEEEESSG
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhccCCCCCeEEec-------CCccc-ccc--cceEEEEehhh
Confidence            457899999999999999999988  4788887 56666666567888887       44432 223  46999999999


Q ss_pred             ccCCh---hHHHHHHHHHhcCCCcEEEEEec
Q 024647          111 HWFDL---PQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       111 ~~~~~---~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      |..+.   ..++++++++|+ |||.+++...
T Consensus       150 h~~~de~~~~iL~~~~~aL~-pgg~llI~e~  179 (244)
T d1fp1d2         150 HNWSDEKCIEFLSNCHKALS-PNGKVIIVEF  179 (244)
T ss_dssp             GGSCHHHHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred             hhCCHHHHHHHHHHHHHHcC-CCcEEEEEEE
Confidence            97743   368999999999 9999988665

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.05  E-value=3.2e-10  Score=93.21  Aligned_cols=113  Identities=16%  Similarity=0.118  Sum_probs=82.7

Q ss_pred             CcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC----------------CCceEEe
Q 024647           19 YPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL----------------PNIRYEL   81 (265)
Q Consensus        19 y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~----------------~~~~~~~   81 (265)
                      |.+.++.......+++.+||.+|+|.|..+..+.++.. +|++||+++.+++.+++.                ++++++.
T Consensus        58 Yhe~l~~~~l~~~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~  137 (276)
T d1mjfa_          58 YHEPLVHPAMLAHPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTI  137 (276)
T ss_dssp             HHHHHHHHHHHHSSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEE
T ss_pred             HHHHhhcchhhcCCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEE
Confidence            55566655555567788999999999999999887643 699999999999999751                3455666


Q ss_pred             cCCccchhhhhhccCCCCceeEEEeccccccC-----ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           82 TSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-----DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        82 ~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-----~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                             +|+..+--.+++||+|++...-..-     -...+++.+.+.|+ |||+++++...
T Consensus       138 -------~Da~~~l~~~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~-~~Gv~v~q~~s  192 (276)
T d1mjfa_         138 -------GDGFEFIKNNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALN-NPGIYVTQAGS  192 (276)
T ss_dssp             -------SCHHHHHHHCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEE-EEEEEEEEEEE
T ss_pred             -------ChHHHHHhccCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcC-CCceEEEecCC
Confidence                   4443322235689999986533221     13579999999999 99999987644

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.02  E-value=9.8e-10  Score=91.16  Aligned_cols=121  Identities=15%  Similarity=0.140  Sum_probs=81.4

Q ss_pred             hCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC--------CCceEEecCCccchhhhhhccCCCCce
Q 024647           30 KTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL--------PNIRYELTSPAMSIAELEQNVAAQSTV  101 (265)
Q Consensus        30 ~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~d~~~~~~~~~~~  101 (265)
                      ...++.+|||++||+|.++..++..+++|++||.|+.+++.|++.        .++++++.++.-   -+.......+.|
T Consensus       129 ~~~~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~---~l~~~~~~~~~f  205 (309)
T d2igta1         129 TADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMK---FIQREERRGSTY  205 (309)
T ss_dssp             HSSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHH---HHHHHHHHTCCB
T ss_pred             hccCCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHH---hHHHHhhcCCCC
Confidence            345678999999999999999999999999999999999999851        246777744311   111222245689


Q ss_pred             eEEEeccc--------cccC---ChhHHHHHHHHHhcCCCcEEEEEecCCCCC-ChHHHHhhccc
Q 024647          102 DLVTIAQA--------MHWF---DLPQFYNQVKWVLKKPNGVIATWCYTVPEV-NVSVDAVFQPF  154 (265)
Q Consensus       102 Dlv~~~~~--------~~~~---~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~-~~~~~~~~~~~  154 (265)
                      |+|++.-.        ..|-   +....+..+.++|+ |||.+++.+.....+ ...+..++.+.
T Consensus       206 D~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~-~~g~~ll~t~~s~~~s~~~~~~~~~~~  269 (309)
T d2igta1         206 DIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILS-PKALGLVLTAYSIRASFYSMHELMRET  269 (309)
T ss_dssp             SEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBC-TTCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcC-CCCCEEEEecCCCCCCHHHHHHHHHHH
Confidence            99998531        1221   23456778889999 899766554443333 23444444443

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.00  E-value=3.7e-10  Score=89.44  Aligned_cols=100  Identities=12%  Similarity=0.144  Sum_probs=70.2

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhcc--CCCCc
Q 024647           33 NHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNV--AAQST  100 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~--~~~~~  100 (265)
                      ++.+|||+|||+|..|..+++..   .+|+++|+++.+++.|++.       .++++..++..-.   +..+.  ...++
T Consensus        56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~---l~~l~~~~~~~~  132 (214)
T d2cl5a1          56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDL---IPQLKKKYDVDT  132 (214)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH---GGGHHHHSCCCC
T ss_pred             CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeecccccc---ccchhhcccccc
Confidence            44789999999999999999763   5799999999999988751       4578887654211   11111  24568


Q ss_pred             eeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEE
Q 024647          101 VDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATW  136 (265)
Q Consensus       101 ~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~  136 (265)
                      ||+|+....-........+.++.++|+ |||++++-
T Consensus       133 ~D~ifiD~~~~~~~~~~~l~~~~~lLk-pGGvIv~D  167 (214)
T d2cl5a1         133 LDMVFLDHWKDRYLPDTLLLEKCGLLR-KGTVLLAD  167 (214)
T ss_dssp             EEEEEECSCGGGHHHHHHHHHHTTCEE-EEEEEEES
T ss_pred             cceeeecccccccccHHHHHHHhCccC-CCcEEEEe
Confidence            999998732111122335677788999 99988763

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.97  E-value=1.4e-09  Score=89.74  Aligned_cols=114  Identities=21%  Similarity=0.149  Sum_probs=83.0

Q ss_pred             CcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC----------CCceEEecCCcc
Q 024647           19 YPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL----------PNIRYELTSPAM   86 (265)
Q Consensus        19 y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~   86 (265)
                      |.+.++..-....+.+.+||-||.|.|..++.+.++.  .+|++||+++.+++.+++.          ++++....++  
T Consensus        75 YhE~l~h~pl~~~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da--  152 (295)
T d1inla_          75 YHEMLAHVPMFLHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANG--  152 (295)
T ss_dssp             HHHHHHHHHHHHSSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCH--
T ss_pred             hhhhhcchhHhhCCCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhH--
Confidence            4455555544455777899999999999999999875  4799999999999998762          4566666443  


Q ss_pred             chhhhhhccCCCCceeEEEeccccccC------ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           87 SIAELEQNVAAQSTVDLVTIAQAMHWF------DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        87 ~~~d~~~~~~~~~~~Dlv~~~~~~~~~------~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                          .+.+....+.||+|++...-.+.      -...+++.+.+.|+ |||+++++...
T Consensus       153 ----~~~l~~~~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~-~~Gi~v~q~~s  206 (295)
T d1inla_         153 ----AEYVRKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALK-EDGVFSAETED  206 (295)
T ss_dssp             ----HHHGGGCSSCEEEEEEEC----------CCSHHHHHHHHHHEE-EEEEEEEECCC
T ss_pred             ----HHHHhcCCCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcC-CCcEEEEecCC
Confidence                12233345689999987543322      23579999999999 99999987654

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.94  E-value=1.4e-09  Score=90.72  Aligned_cols=112  Identities=20%  Similarity=0.185  Sum_probs=81.6

Q ss_pred             CcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC-----------CCceEEecCCc
Q 024647           19 YPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL-----------PNIRYELTSPA   85 (265)
Q Consensus        19 y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-----------~~~~~~~~~~~   85 (265)
                      |.+.++.......+.+++||.||+|.|..++.+.++.  .+|++||+++.+++.+++.           ++++.+..++ 
T Consensus        63 Yhe~l~h~~l~~~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da-  141 (312)
T d1uira_          63 YHETLVHPAMLTHPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDA-  141 (312)
T ss_dssp             HHHHHHHHHHHHSSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCH-
T ss_pred             HHHHHhhhhhhhCCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchH-
Confidence            4455555444445777899999999999999998765  4799999999999988752           4566776443 


Q ss_pred             cchhhhhh-ccCCCCceeEEEeccccccC--------ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647           86 MSIAELEQ-NVAAQSTVDLVTIAQAMHWF--------DLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        86 ~~~~d~~~-~~~~~~~~Dlv~~~~~~~~~--------~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                            .. +...+++||+|++...=.+.        -...+++.+.+.|+ |||+++++..
T Consensus       142 ------~~~l~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~-p~Gvlv~~~~  196 (312)
T d1uira_         142 ------RAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLN-PGGVMGMQTG  196 (312)
T ss_dssp             ------HHHHHHCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEE-EEEEEEEEEE
T ss_pred             ------HHHhhhcCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcC-CCceEEEecC
Confidence                  32 22245689999976532221        12469999999999 9999998764

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.90  E-value=3.2e-09  Score=84.97  Aligned_cols=85  Identities=13%  Similarity=0.110  Sum_probs=66.5

Q ss_pred             cHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc----CCCceEEecCCccchhhhhh
Q 024647           20 PEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK----LPNIRYELTSPAMSIAELEQ   93 (265)
Q Consensus        20 ~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~----~~~~~~~~~~~~~~~~d~~~   93 (265)
                      .+.+++.+....  .++++|||||||+|.+|..|++.+.+|++||+++.+++.+++    .+|+.++.       +|+-+
T Consensus         6 d~~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~~~~n~~i~~-------~D~l~   78 (235)
T d1qama_           6 SKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQVLN-------KDILQ   78 (235)
T ss_dssp             CHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTCCSEEEEC-------CCGGG
T ss_pred             CHHHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhhcccchhhhh-------hhhhh
Confidence            356677777765  478999999999999999999999999999999999998875    35677777       67777


Q ss_pred             ccCCCCceeEEEeccccc
Q 024647           94 NVAAQSTVDLVTIAQAMH  111 (265)
Q Consensus        94 ~~~~~~~~Dlv~~~~~~~  111 (265)
                      +.++......|+++...+
T Consensus        79 ~~~~~~~~~~vv~NLPYn   96 (235)
T d1qama_          79 FKFPKNQSYKIFGNIPYN   96 (235)
T ss_dssp             CCCCSSCCCEEEEECCGG
T ss_pred             ccccccccceeeeeehhh
Confidence            666555555677765433

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=6.3e-09  Score=82.35  Aligned_cols=101  Identities=21%  Similarity=0.323  Sum_probs=74.4

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhc--cCCCC
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQN--VAAQS   99 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~--~~~~~   99 (265)
                      .++++|||+|||+|..|..+++..   .+|+.+|+++...+.|++.       ..+.+..+++.   ..+..+  ....+
T Consensus        58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~---e~l~~~~~~~~~~  134 (219)
T d2avda1          58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPAL---ETLDELLAAGEAG  134 (219)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHH---HHHHHHHHTTCTT
T ss_pred             cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehh---hcchhhhhhcccC
Confidence            356889999999999999999864   4799999999999998852       45777775541   111111  12457


Q ss_pred             ceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          100 TVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       100 ~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      +||+|+....-  -.....++.+.+.|+ |||.+++-+.
T Consensus       135 ~fD~ifiD~dk--~~y~~~~~~~~~lL~-~GGvii~Dn~  170 (219)
T d2avda1         135 TFDVAVVDADK--ENCSAYYERCLQLLR-PGGILAVLRV  170 (219)
T ss_dssp             CEEEEEECSCS--TTHHHHHHHHHHHEE-EEEEEEEECC
T ss_pred             CccEEEEeCCH--HHHHHHHHHHHHHhc-CCcEEEEeCC
Confidence            89999986321  144567889999999 9999988433

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.90  E-value=2.3e-09  Score=86.41  Aligned_cols=94  Identities=19%  Similarity=0.252  Sum_probs=73.3

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecccc
Q 024647           33 NHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAM  110 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~  110 (265)
                      ...+|||||||+|.++..++++++  +++..|. |..++.+....+++++.       +|+.+-   ...+|++++.+++
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~~~~rv~~~~-------gD~f~~---~p~aD~~~l~~vL  148 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGSNNLTYVG-------GDMFTS---IPNADAVLLKYIL  148 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCBTTEEEEE-------CCTTTC---CCCCSEEEEESCG
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhCcccCceEEEe-------cCcccC---CCCCcEEEEEeec
Confidence            346799999999999999999987  5888998 56677666567888888       554432   2358999999999


Q ss_pred             ccCCh---hHHHHHHHHHhcCCC---cEEEEEec
Q 024647          111 HWFDL---PQFYNQVKWVLKKPN---GVIATWCY  138 (265)
Q Consensus       111 ~~~~~---~~~l~~~~~~Lk~pg---G~l~~~~~  138 (265)
                      |..+.   .+.|+++++.|+ ||   |++++...
T Consensus       149 Hdw~d~~~~~iL~~~~~al~-pgg~~~~lli~e~  181 (244)
T d1fp2a2         149 HNWTDKDCLRILKKCKEAVT-NDGKRGKVTIIDM  181 (244)
T ss_dssp             GGSCHHHHHHHHHHHHHHHS-GGGCCCEEEEEEC
T ss_pred             ccCChHHHHHHHHHHHHHcC-cccCCcEEEEEEe
Confidence            97743   368999999999 88   66666443

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.86  E-value=7.6e-09  Score=84.63  Aligned_cols=114  Identities=17%  Similarity=0.195  Sum_probs=84.2

Q ss_pred             CcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC----------CCceEEecCCcc
Q 024647           19 YPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL----------PNIRYELTSPAM   86 (265)
Q Consensus        19 y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~   86 (265)
                      |.+.+........+.+.+||-||-|.|..++.+.++.  .+|+.||+++.+++.+++.          ++++.+..++. 
T Consensus        61 Yhe~l~h~~l~~~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~-  139 (274)
T d1iy9a_          61 YHEMVAHVPLFTHPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGF-  139 (274)
T ss_dssp             HHHHHHHHHHHHSSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSH-
T ss_pred             chhhhccchhhccCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHH-
Confidence            4445555445455777899999999999999999874  4799999999999998762          46677774431 


Q ss_pred             chhhhhhccCCCCceeEEEeccccccC-----ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           87 SIAELEQNVAAQSTVDLVTIAQAMHWF-----DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        87 ~~~d~~~~~~~~~~~Dlv~~~~~~~~~-----~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                           +.+....++||+|++...-..-     -...+++.+.+.|+ |||+++.+...
T Consensus       140 -----~~l~~~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~-~~Gv~v~q~~s  191 (274)
T d1iy9a_         140 -----MHIAKSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALK-EDGIFVAQTDN  191 (274)
T ss_dssp             -----HHHHTCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEE-EEEEEEEECCC
T ss_pred             -----HHHhhcCCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcC-CCceEEEecCC
Confidence                 1122345689999987532221     24579999999999 99999987654

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.86  E-value=1.3e-08  Score=78.06  Aligned_cols=118  Identities=19%  Similarity=0.264  Sum_probs=90.7

Q ss_pred             hCCCCcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc--CCCceEEecCCccchhhhh
Q 024647           15 TRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK--LPNIRYELTSPAMSIAELE   92 (265)
Q Consensus        15 ~rp~y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~--~~~~~~~~~~~~~~~~d~~   92 (265)
                      +.|..-+++++.|.  ..+++.++|..||.|..+..+.+..++|+|+|.++.++..+++  .+++.+...+.    .++.
T Consensus         2 H~pVll~Evl~~l~--~~~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f----~~~~   75 (182)
T d1wg8a2           2 HVPVLYQEALDLLA--VRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGLHLPGLTVVQGNF----RHLK   75 (182)
T ss_dssp             CCCTTHHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCTTEEEEESCG----GGHH
T ss_pred             ccchHHHHHHHhcC--CCCCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHHHhhccccceeEeehHH----HHHH
Confidence            56777788887774  3577899999999999999999998999999999999999886  36788888665    3333


Q ss_pred             hc--cCCCCceeEEEeccccc--cC-C-------hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           93 QN--VAAQSTVDLVTIAQAMH--WF-D-------LPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        93 ~~--~~~~~~~Dlv~~~~~~~--~~-~-------~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      ..  ....+.+|.|+....+-  .+ +       ....|....++|+ |||.+++..++
T Consensus        76 ~~l~~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk-~gg~~~ii~fh  133 (182)
T d1wg8a2          76 RHLAALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLA-PGGRLVVIAFH  133 (182)
T ss_dssp             HHHHHTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEE-EEEEEEEEECS
T ss_pred             HHHHHcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhC-CCCeEEEEecc
Confidence            32  12456899999876442  12 2       2247888899999 99999988775

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.85  E-value=1e-08  Score=84.52  Aligned_cols=114  Identities=17%  Similarity=0.222  Sum_probs=83.4

Q ss_pred             CcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC----------CCceEEecCCcc
Q 024647           19 YPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL----------PNIRYELTSPAM   86 (265)
Q Consensus        19 y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~   86 (265)
                      |.+.++.......+.+.+||-||-|.|...+.+.++.+  +|++||+++.+++.+++.          ++++.+..++  
T Consensus        66 Yhe~l~h~~~~~~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da--  143 (290)
T d1xj5a_          66 YQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDG--  143 (290)
T ss_dssp             HHHHHHHHHHTTSSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCH--
T ss_pred             HHHHHhhHHHhhCCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccH--
Confidence            44555555554557778999999999999999998754  799999999999999862          5566666432  


Q ss_pred             chhhhhhcc-CCCCceeEEEeccccccC-----ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           87 SIAELEQNV-AAQSTVDLVTIAQAMHWF-----DLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        87 ~~~d~~~~~-~~~~~~Dlv~~~~~~~~~-----~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                          .+.+. ...++||+|++...-..-     -...+++.+.+.|+ |||+++++...
T Consensus       144 ----~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~-~~Gi~v~q~~s  197 (290)
T d1xj5a_         144 ----VAFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALR-PGGVVCTQAES  197 (290)
T ss_dssp             ----HHHHHTSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEE-EEEEEEEECCC
T ss_pred             ----HHHHhhccccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcC-CCcEEEEecCC
Confidence                12221 345689999986432111     12469999999999 99999998754

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=9.1e-09  Score=84.57  Aligned_cols=113  Identities=17%  Similarity=0.212  Sum_probs=81.8

Q ss_pred             CcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC----------CCceEEecCCcc
Q 024647           19 YPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL----------PNIRYELTSPAM   86 (265)
Q Consensus        19 y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~   86 (265)
                      |.+.+........+.+++||-+|.|.|..++.+.++.  .+|+.||+++.+++.+++.          ++++.+.     
T Consensus        64 Yhe~l~h~~l~~~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~-----  138 (285)
T d2o07a1          64 YQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHV-----  138 (285)
T ss_dssp             HHHHHHHHHHTTSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE-----
T ss_pred             HHHHhccHhhhhCcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEE-----
Confidence            4444554444455777899999999999999999874  4799999999999999762          5666666     


Q ss_pred             chhhhhh-ccCCCCceeEEEecccccc-----CChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           87 SIAELEQ-NVAAQSTVDLVTIAQAMHW-----FDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        87 ~~~d~~~-~~~~~~~~Dlv~~~~~~~~-----~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                        +|+.. +....++||+|++...-..     +-...+++.+.+.|+ |||+++++...
T Consensus       139 --~Da~~~l~~~~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~-~~Gi~v~q~~s  194 (285)
T d2o07a1         139 --GDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALK-EDGVLCCQGEC  194 (285)
T ss_dssp             --SCHHHHHHTCSSCEEEEEEECC-----------CHHHHHHHHHEE-EEEEEEEEEEC
T ss_pred             --ccHHHHHhcCCCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcC-CCCeEEEeccc
Confidence              44322 2234568999998642111     123468999999999 99999987654

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.81  E-value=9.2e-09  Score=81.77  Aligned_cols=110  Identities=10%  Similarity=0.167  Sum_probs=77.6

Q ss_pred             HHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhh
Q 024647           23 LFKFITSKTTNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELE   92 (265)
Q Consensus        23 l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~   92 (265)
                      ++..|... ..+++|||+|+++|..+..+++..   ++|+.+|.++...+.|++.       ..+.++.+++.-+...+.
T Consensus        50 ~L~~L~~~-~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~  128 (227)
T d1susa1          50 FLSMLLKL-INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMI  128 (227)
T ss_dssp             HHHHHHHH-HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHh-cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHH
Confidence            44444433 345889999999999999999754   4799999999999988852       357787766521111111


Q ss_pred             hccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEe
Q 024647           93 QNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        93 ~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      .-....++||+|+...   +- .....++.+.++|+ |||.+++-+
T Consensus       129 ~~~~~~~~fD~iFiDa---~k~~y~~~~e~~~~ll~-~gGiii~DN  170 (227)
T d1susa1         129 KDEKNHGSYDFIFVDA---DKDNYLNYHKRLIDLVK-VGGVIGYDN  170 (227)
T ss_dssp             HCGGGTTCBSEEEECS---CSTTHHHHHHHHHHHBC-TTCCEEEET
T ss_pred             hccccCCceeEEEecc---chhhhHHHHHHHHhhcC-CCcEEEEcc
Confidence            1111356899999863   22 45678899999999 999999843

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.81  E-value=3.3e-09  Score=85.53  Aligned_cols=93  Identities=18%  Similarity=0.172  Sum_probs=71.7

Q ss_pred             CCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccccc
Q 024647           34 HELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMH  111 (265)
Q Consensus        34 ~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~  111 (265)
                      ..+|||||||+|.++..++++++  ++++.|..+ .++.++..+++.+..       +|+.+ +.|  ..|+++....+|
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~~~~~~r~~~~~-------~d~~~-~~P--~ad~~~l~~vlh  150 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIEDAPSYPGVEHVG-------GDMFV-SIP--KADAVFMKWICH  150 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTTTCCCCTTEEEEE-------CCTTT-CCC--CCSCEECSSSST
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhhhcccCCceEEec-------ccccc-cCC--CcceEEEEEEee
Confidence            46899999999999999999987  588999854 466666667888887       44432 223  357778888887


Q ss_pred             cCC---hhHHHHHHHHHhcCCCcEEEEEec
Q 024647          112 WFD---LPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       112 ~~~---~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      -.+   ...++++++++|+ |||.+++...
T Consensus       151 ~~~d~~~~~iL~~~~~al~-pgg~~li~d~  179 (243)
T d1kyza2         151 DWSDEHCLKFLKNCYEALP-DNGKVIVAEC  179 (243)
T ss_dssp             TSCHHHHHHHHHHHHHHCC-SSSCEEEEEC
T ss_pred             cCCHHHHHHHHHHHHHhcC-CCceEEEEEE
Confidence            553   4479999999999 9999888654

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.80  E-value=1.1e-08  Score=84.73  Aligned_cols=114  Identities=16%  Similarity=0.166  Sum_probs=81.0

Q ss_pred             CCcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC----------CCceEEecCCc
Q 024647           18 NYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL----------PNIRYELTSPA   85 (265)
Q Consensus        18 ~y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~   85 (265)
                      .|.+.++.......+.+.+||-||.|.|..++.+.++.  .+|+.||+++.+++.+++.          ++++.+.    
T Consensus        91 ~YhE~l~h~pl~~~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i----  166 (312)
T d2b2ca1          91 SYQEMLAHLPMFAHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFC----  166 (312)
T ss_dssp             HHHHHHHHHHHHHSSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEEC----
T ss_pred             HHHHHhhhHHHhcCCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEE----
Confidence            35555555444445777899999999999999999876  4799999999999999862          3455555    


Q ss_pred             cchhhhhh-ccCCCCceeEEEeccccc-----cCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           86 MSIAELEQ-NVAAQSTVDLVTIAQAMH-----WFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        86 ~~~~d~~~-~~~~~~~~Dlv~~~~~~~-----~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                         +|+.. +....++||+|++...-.     .+-...+++.+.+.|+ |||+++.+...
T Consensus       167 ---~Da~~~l~~~~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~-~~Gi~v~q~~s  222 (312)
T d2b2ca1         167 ---GDGFEFLKNHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALK-EDGILSSQGES  222 (312)
T ss_dssp             ---SCHHHHHHHCTTCEEEEEECCC-------------HHHHHHHHEE-EEEEEEEECCC
T ss_pred             ---chHHHHHHhCCCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcC-CCcEEEEecCC
Confidence               44332 223456899999865322     1223478999999999 99999997654

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.80  E-value=1.1e-08  Score=78.75  Aligned_cols=119  Identities=18%  Similarity=0.082  Sum_probs=77.2

Q ss_pred             hCCCCcHHHHHHHHhhC---CCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHc----C--C--CceEEec
Q 024647           15 TRPNYPEELFKFITSKT---TNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATK----L--P--NIRYELT   82 (265)
Q Consensus        15 ~rp~y~~~l~~~l~~~~---~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~----~--~--~~~~~~~   82 (265)
                      .||+ ++.+-+.+-+..   -.+.+|||+.||||.++...+.+++ +|+.||.+...++..++    +  .  .......
T Consensus        23 ~RPt-~~~vrealFn~l~~~~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~  101 (183)
T d2ifta1          23 LRPT-GDRVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQ  101 (183)
T ss_dssp             ------CHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECS
T ss_pred             cCcC-cHHHHHHHHHHhhhhcccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccc
Confidence            5776 444444443332   2557899999999999999999998 69999999999987764    1  1  2233332


Q ss_pred             CCccchhhhhhccCCCCceeEEEeccccccCChhHHHHHHHH--HhcCCCcEEEEEecC
Q 024647           83 SPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKW--VLKKPNGVIATWCYT  139 (265)
Q Consensus        83 ~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~--~Lk~pgG~l~~~~~~  139 (265)
                      ++    .+..........||+|++.-....-.....++.+..  +|+ ++|.+++....
T Consensus       102 d~----~~~l~~~~~~~~fDlIFlDPPY~~~~~~~~l~~l~~~~~L~-~~~liiiE~~~  155 (183)
T d2ifta1         102 SS----LDFLKQPQNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLK-PNALIYVETEK  155 (183)
T ss_dssp             CH----HHHTTSCCSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEE-EEEEEEEEEES
T ss_pred             cc----cccccccccCCcccEEEechhHhhhhHHHHHHHHHHhCCcC-CCcEEEEEecC
Confidence            21    122222234557999999876655445567777754  689 89999986554

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.78  E-value=3.7e-10  Score=91.07  Aligned_cols=85  Identities=13%  Similarity=0.200  Sum_probs=67.0

Q ss_pred             HHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC----CCceEEecCCccchhhhhhcc
Q 024647           22 ELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL----PNIRYELTSPAMSIAELEQNV   95 (265)
Q Consensus        22 ~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~d~~~~~   95 (265)
                      .+++.+....  .++++|||||||+|.+|..|++.+.+|++||+++.+++.+++.    +|+.+..       +|+.+++
T Consensus        16 ~ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~-------~D~l~~~   88 (245)
T d1yuba_          16 KVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIH-------QDILQFQ   88 (245)
T ss_dssp             TTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTCSEEEECC-------SCCTTTT
T ss_pred             HHHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhhhccchhhhh-------hhhhccc
Confidence            3455555544  4678999999999999999999999999999999999888752    4565555       6777777


Q ss_pred             CCCCceeEEEeccccccC
Q 024647           96 AAQSTVDLVTIAQAMHWF  113 (265)
Q Consensus        96 ~~~~~~Dlv~~~~~~~~~  113 (265)
                      ++....+.|+++...|..
T Consensus        89 ~~~~~~~~vv~NLPY~Is  106 (245)
T d1yuba_          89 FPNKQRYKIVGNIPYHLS  106 (245)
T ss_dssp             CCCSSEEEEEEECCSSSC
T ss_pred             cccceeeeEeeeeehhhh
Confidence            777788888888776643

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.67  E-value=1.1e-07  Score=77.23  Aligned_cols=114  Identities=21%  Similarity=0.283  Sum_probs=74.4

Q ss_pred             CCCCcHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcC-CcEEEEcCCHHHHHHHHcC------C-CceEEecCCc
Q 024647           16 RPNYPEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIF-ENVIGTETSPKQIEFATKL------P-NIRYELTSPA   85 (265)
Q Consensus        16 rp~y~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~------~-~~~~~~~~~~   85 (265)
                      ||. ++.+++++....  .+..+++|+|||+|..+..+++.- .+|+++|+|+..++.|++.      . .+.+..    
T Consensus        92 Rpe-TE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~----  166 (271)
T d1nv8a_          92 RPE-TEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRK----  166 (271)
T ss_dssp             CTT-HHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEE----
T ss_pred             hhh-hhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEee----
Confidence            444 566777766543  234689999999999999987643 4799999999999998852      2 234444    


Q ss_pred             cchhhhhh-ccCCCCceeEEEecccc-c---c------CChh----------HHHHH-HHHHhcCCCcEEEEEec
Q 024647           86 MSIAELEQ-NVAAQSTVDLVTIAQAM-H---W------FDLP----------QFYNQ-VKWVLKKPNGVIATWCY  138 (265)
Q Consensus        86 ~~~~d~~~-~~~~~~~~Dlv~~~~~~-~---~------~~~~----------~~l~~-~~~~Lk~pgG~l~~~~~  138 (265)
                         +++.. .+...++||+|+++-.. .   .      .+|.          .++.+ +.+.|+ |||.+++...
T Consensus       167 ---~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~-~~G~l~~Eig  237 (271)
T d1nv8a_         167 ---GEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDT-SGKIVLMEIG  237 (271)
T ss_dssp             ---SSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCC-TTCEEEEECC
T ss_pred             ---cccccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcC-CCCEEEEEEC
Confidence               33322 22234689999998521 0   0      1121          22322 457789 9999888554

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.64  E-value=3.4e-08  Score=75.66  Aligned_cols=127  Identities=13%  Similarity=0.095  Sum_probs=83.6

Q ss_pred             HHHHHHHhh--CCCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhh-hcc
Q 024647           22 ELFKFITSK--TTNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELE-QNV   95 (265)
Q Consensus        22 ~l~~~l~~~--~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~   95 (265)
                      +|.+....+  .++..+|||+||++|.+++.+.++.   ..++++|+.+-     +..+++.+.+++......... ...
T Consensus         9 KL~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----~~i~~~~~~~~d~~~~~~~~~~~~~   83 (180)
T d1ej0a_           9 KLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----DPIVGVDFLQGDFRDELVMKALLER   83 (180)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----CCCTTEEEEESCTTSHHHHHHHHHH
T ss_pred             HHHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----cccCCceEeecccccchhhhhhhhh
Confidence            566655544  3678899999999999999988753   46999998773     345788888876532111100 011


Q ss_pred             CCCCceeEEEeccccccC-----Ch-------hHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHhhcccc
Q 024647           96 AAQSTVDLVTIAQAMHWF-----DL-------PQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQPFY  155 (265)
Q Consensus        96 ~~~~~~Dlv~~~~~~~~~-----~~-------~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~~~~~  155 (265)
                      ...+.+|+|++..+..-.     |.       ...+.-+.++|+ +||.+++=.+.... ...+...+..++
T Consensus        84 ~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk-~gG~fV~K~F~g~~-~~~l~~~l~~~F  153 (180)
T d1ej0a_          84 VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLA-PGGSFVVKVFQGEG-FDEYLREIRSLF  153 (180)
T ss_dssp             HTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEEEEESSTT-HHHHHHHHHHHE
T ss_pred             ccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccC-CCCcEEEEEecCcc-HHHHHHHHHhhc
Confidence            245689999998875533     21       246777899999 99999985554333 233444444433

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.61  E-value=4.9e-08  Score=76.94  Aligned_cols=108  Identities=18%  Similarity=0.234  Sum_probs=76.7

Q ss_pred             cHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhc
Q 024647           20 PEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQN   94 (265)
Q Consensus        20 ~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   94 (265)
                      |+.+.+.+....  +++.+|||.|||+|.+...+.++.   .+++|+|+++..+..++   ......       +|....
T Consensus         4 P~~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~---~~~~~~-------~~~~~~   73 (223)
T d2ih2a1           4 PPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP---WAEGIL-------ADFLLW   73 (223)
T ss_dssp             CHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT---TEEEEE-------SCGGGC
T ss_pred             CHHHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc---cceeee-------eehhcc
Confidence            677888887765  466899999999999998887653   35999999998655443   234444       333333


Q ss_pred             cCCCCceeEEEeccccccC---C---------------------------hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647           95 VAAQSTVDLVTIAQAMHWF---D---------------------------LPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus        95 ~~~~~~~Dlv~~~~~~~~~---~---------------------------~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                       .....||+|+++..+...   .                           ...++..+.+.|+ +||.+++..+.
T Consensus        74 -~~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk-~~G~~~~I~p~  146 (223)
T d2ih2a1          74 -EPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLK-PGGVLVFVVPA  146 (223)
T ss_dssp             -CCSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEE-EEEEEEEEEEG
T ss_pred             -ccccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcc-cCCceEEEEee
Confidence             245689999998754211   0                           1246788899999 99999887664

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.59  E-value=1.3e-07  Score=80.22  Aligned_cols=123  Identities=15%  Similarity=0.197  Sum_probs=79.8

Q ss_pred             cHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhh
Q 024647           20 PEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAEL   91 (265)
Q Consensus        20 ~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~   91 (265)
                      .+.+++.+.+..  .++.+|||+-||+|.++..|++.+.+|+|+|.++.+++.|++      ..|+.+..++.+.   .+
T Consensus       197 ~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~---~~  273 (358)
T d1uwva2         197 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEE---DV  273 (358)
T ss_dssp             HHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTS---CC
T ss_pred             hhHHHHHHHHhhccCCCceEEEecccccccchhccccccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhh---hh
Confidence            455666665554  356789999999999999999999999999999999998875      4688888865421   11


Q ss_pred             hhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHh
Q 024647           92 EQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAV  150 (265)
Q Consensus        92 ~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~  150 (265)
                      .........+|+|+..-.=  ....++++.+.+. + |.-++++++ ++.++...+..+
T Consensus       274 ~~~~~~~~~~d~vilDPPR--~G~~~~~~~l~~~-~-~~~ivYVSC-np~TlaRDl~~l  327 (358)
T d1uwva2         274 TKQPWAKNGFDKVLLDPAR--AGAAGVMQQIIKL-E-PIRIVYVSC-NPATLARDSEAL  327 (358)
T ss_dssp             SSSGGGTTCCSEEEECCCT--TCCHHHHHHHHHH-C-CSEEEEEES-CHHHHHHHHHHH
T ss_pred             hhhhhhhccCceEEeCCCC--ccHHHHHHHHHHc-C-CCEEEEEeC-CHHHHHHHHHHH
Confidence            1222334679999864200  0012456665553 6 666555544 333443444433

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=3.8e-07  Score=73.39  Aligned_cols=76  Identities=16%  Similarity=0.126  Sum_probs=53.0

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhh-c-cCCCCce
Q 024647           33 NHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQ-N-VAAQSTV  101 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~-~-~~~~~~~  101 (265)
                      +..++||+|||+|..+..|+.+.  .+++|+|+|+.+++.|++.       ..+.+......   .++.. + ....++|
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~---~~~~~~~~~~~~~~f  137 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQK---TLLMDALKEESEIIY  137 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT---CSSTTTSTTCCSCCB
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccH---HhhhhhhhhcccCce
Confidence            34589999999999999998864  5799999999999999862       23444432210   11111 1 1235679


Q ss_pred             eEEEeccccc
Q 024647          102 DLVTIAQAMH  111 (265)
Q Consensus       102 Dlv~~~~~~~  111 (265)
                      |+|+|+-..+
T Consensus       138 D~ivsNPPY~  147 (250)
T d2h00a1         138 DFCMCNPPFF  147 (250)
T ss_dssp             SEEEECCCCC
T ss_pred             eEEEecCccc
Confidence            9999998665

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.46  E-value=2.3e-07  Score=77.74  Aligned_cols=99  Identities=15%  Similarity=0.129  Sum_probs=70.5

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcC-----C--cEEEEcCCHHHHHHHHc-----CCCceEEecCCccchhhhhhccCCCC
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIF-----E--NVIGTETSPKQIEFATK-----LPNIRYELTSPAMSIAELEQNVAAQS   99 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~-----~--~v~~vD~s~~~~~~a~~-----~~~~~~~~~~~~~~~~d~~~~~~~~~   99 (265)
                      .++.+|||.|||+|.+...+.++.     .  +++|+|+++.+++.|+.     ..+.....       +|.... .+..
T Consensus       116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~-------~d~~~~-~~~~  187 (328)
T d2f8la1         116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLH-------QDGLAN-LLVD  187 (328)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEE-------SCTTSC-CCCC
T ss_pred             CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhc-------cccccc-cccc
Confidence            355789999999999998886532     1  59999999999998863     23444444       232222 3557


Q ss_pred             ceeEEEeccccccC-C------------------hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          100 TVDLVTIAQAMHWF-D------------------LPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       100 ~~Dlv~~~~~~~~~-~------------------~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      .||+|+++-.+... .                  ...++..+.+.|+ |||++++..+.
T Consensus       188 ~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk-~~G~~~~I~p~  245 (328)
T d2f8la1         188 PVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTK-PGGYLFFLVPD  245 (328)
T ss_dssp             CEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEE-EEEEEEEEEEG
T ss_pred             cccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcC-CCCceEEEecC
Confidence            89999999754211 1                  1137999999999 99999887764

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.42  E-value=1.9e-07  Score=75.09  Aligned_cols=63  Identities=10%  Similarity=0.104  Sum_probs=50.7

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC----CCceEEecC
Q 024647           21 EELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL----PNIRYELTS   83 (265)
Q Consensus        21 ~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~   83 (265)
                      +.+++.+....  .+++.|||||||+|.+|..|++.+.+|++||+++.+++.++..    +++.++.++
T Consensus         7 ~~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D   75 (252)
T d1qyra_           7 QFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQD   75 (252)
T ss_dssp             HHHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSC
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHHHHHHhhhccchhHHhhh
Confidence            44555665553  4678899999999999999999999999999999999988762    456666643

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.40  E-value=5.1e-07  Score=70.31  Aligned_cols=94  Identities=20%  Similarity=0.158  Sum_probs=74.1

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhccCCCCceeEE
Q 024647           33 NHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQNVAAQSTVDLV  104 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv  104 (265)
                      ++.+++|+|+|.|.-+..++-..+  +++.+|.+..-+...+.      +.|+......       +++.. ...+||+|
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R-------~E~~~-~~~~fD~V  136 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSR-------VEEFP-SEPPFDGV  136 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECC-------TTTSC-CCSCEEEE
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccc-------hhhhc-ccccccee
Confidence            457899999999999999987665  69999999998887654      4688888844       45553 45689999


Q ss_pred             EeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          105 TIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       105 ~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      ++...   .+...++.-+...++ ++|.+++.-.
T Consensus       137 ~sRA~---~~~~~ll~~~~~~l~-~~g~~~~~KG  166 (207)
T d1jsxa_         137 ISRAF---ASLNDMVSWCHHLPG-EQGRFYALKG  166 (207)
T ss_dssp             ECSCS---SSHHHHHHHHTTSEE-EEEEEEEEES
T ss_pred             hhhhh---cCHHHHHHHHHHhcC-CCcEEEEECC
Confidence            98632   266789999999999 9999887553

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=4.5e-07  Score=73.85  Aligned_cols=82  Identities=15%  Similarity=0.230  Sum_probs=62.2

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhh
Q 024647           21 EELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAEL   91 (265)
Q Consensus        21 ~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~   91 (265)
                      +.+++.+....  .++++|||||||+|.+|..|++++++|++||+++.+++..++.       .++..+.       +|+
T Consensus         7 ~~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~-------~D~   79 (278)
T d1zq9a1           7 PLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLV-------GDV   79 (278)
T ss_dssp             HHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEE-------SCT
T ss_pred             HHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhccccchhhhH-------HHH
Confidence            45666776654  4678999999999999999999999999999999999988752       3566666       555


Q ss_pred             hhccCCCCceeEEEeccccc
Q 024647           92 EQNVAAQSTVDLVTIAQAMH  111 (265)
Q Consensus        92 ~~~~~~~~~~Dlv~~~~~~~  111 (265)
                      -...++  ..+.|+++...+
T Consensus        80 l~~~~~--~~~~vV~NLPY~   97 (278)
T d1zq9a1          80 LKTDLP--FFDTCVANLPYQ   97 (278)
T ss_dssp             TTSCCC--CCSEEEEECCGG
T ss_pred             hhhhhh--hhhhhhcchHHH
Confidence            555433  356788875443

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.26  E-value=8e-07  Score=70.47  Aligned_cols=113  Identities=14%  Similarity=0.125  Sum_probs=71.2

Q ss_pred             cHHH--HHHHHhhCCCCCeEEEEcCCcchhHHHHHhc------CCcEEEEcCCHHHHHHH-HcCCCceEEecCCccchhh
Q 024647           20 PEEL--FKFITSKTTNHELAWDVGTGSGQAAASLSGI------FENVIGTETSPKQIEFA-TKLPNIRYELTSPAMSIAE   90 (265)
Q Consensus        20 ~~~l--~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~------~~~v~~vD~s~~~~~~a-~~~~~~~~~~~~~~~~~~d   90 (265)
                      |.++  ++.|....+ +.+|||+|++.|..+..+++.      -.+|+++|+++...... ...+++.+.+++.... ..
T Consensus        66 p~d~~~~~eli~~~K-Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~-~~  143 (232)
T d2bm8a1          66 PDTQAVYHDMLWELR-PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDL-TT  143 (232)
T ss_dssp             HHHHHHHHHHHHHHC-CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCS-GG
T ss_pred             HHHHHHHHHHHHHhC-CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccH-HH
Confidence            4444  333444333 578999999999988877643      24799999988765433 2357888888664211 11


Q ss_pred             hhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647           91 LEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        91 ~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      ++.+  ....+|+|+.... |..+....--+....|+ +||.+++-+.
T Consensus       144 ~~~l--~~~~~dlIfID~~-H~~~~v~~~~~~~~lLk-~GG~iIveD~  187 (232)
T d2bm8a1         144 FEHL--REMAHPLIFIDNA-HANTFNIMKWAVDHLLE-EGDYFIIEDM  187 (232)
T ss_dssp             GGGG--SSSCSSEEEEESS-CSSHHHHHHHHHHHTCC-TTCEEEECSC
T ss_pred             HHHH--HhcCCCEEEEcCC-cchHHHHHHHHHhcccC-cCCEEEEEcC
Confidence            2222  3446888887544 65533322124568999 9999998553

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.16  E-value=5.8e-06  Score=65.49  Aligned_cols=98  Identities=21%  Similarity=0.261  Sum_probs=73.6

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhccCCCCceeEE
Q 024647           33 NHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQNVAAQSTVDLV  104 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv  104 (265)
                      ...+++|||+|.|.-+..++=..+  +++.+|.+..-++..+.      +.|+..+...+    .++.......++||+|
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~----E~~~~~~~~~~~~D~v  145 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRA----ETFGQRKDVRESYDIV  145 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCH----HHHTTCTTTTTCEEEE
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehh----hhccccccccccceEE
Confidence            457899999999999999886554  69999999998887653      57888887444    2222222234689999


Q ss_pred             EeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          105 TIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       105 ~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      ++...   .+...++.-+...++ +||.+++.-.
T Consensus       146 ~sRAv---a~l~~ll~~~~~~l~-~~g~~i~~KG  175 (239)
T d1xdza_         146 TARAV---ARLSVLSELCLPLVK-KNGLFVALKA  175 (239)
T ss_dssp             EEECC---SCHHHHHHHHGGGEE-EEEEEEEEEC
T ss_pred             EEhhh---hCHHHHHHHHhhhcc-cCCEEEEECC
Confidence            99732   267889999999999 9999887543

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=98.11  E-value=2e-06  Score=67.90  Aligned_cols=108  Identities=17%  Similarity=0.092  Sum_probs=66.1

Q ss_pred             HHHHHHHhh-CCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHH---HHcC-CCc-eEEecCCccchhhhhh
Q 024647           22 ELFKFITSK-TTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEF---ATKL-PNI-RYELTSPAMSIAELEQ   93 (265)
Q Consensus        22 ~l~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~---a~~~-~~~-~~~~~~~~~~~~d~~~   93 (265)
                      +|.+..... ..+.++|+|+|||+|..+..++++.  ..+.|+++--...+.   ...+ -++ .+...      .|+..
T Consensus        54 Kl~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~------~dv~~  127 (257)
T d2p41a1          54 KLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSG------VDVFF  127 (257)
T ss_dssp             HHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECS------CCTTT
T ss_pred             HHHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhh------hhHHh
Confidence            555444433 3567889999999999999999775  367777774221000   0000 111 22211      23333


Q ss_pred             ccCCCCceeEEEeccccccCCh----h---HHHHHHHHHhcCCCcEEEEEec
Q 024647           94 NVAAQSTVDLVTIAQAMHWFDL----P---QFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        94 ~~~~~~~~Dlv~~~~~~~~~~~----~---~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                        .+++.+|+|+|..+-+-.++    .   .+++-+.+.|+ |||.|++=.+
T Consensus       128 --l~~~~~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk-~gg~FvvKVl  176 (257)
T d2p41a1         128 --IPPERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLS-NNTQFCVKVL  176 (257)
T ss_dssp             --SCCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCC-TTCEEEEEES
T ss_pred             --cCCCcCCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcc-cCCEEEEEEC
Confidence              35678999999865432222    1   57778889999 9999987444

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.00  E-value=9.4e-06  Score=70.06  Aligned_cols=111  Identities=14%  Similarity=0.166  Sum_probs=79.2

Q ss_pred             cHHHHHHHHhhCC--CCCeEEEEcCCcchhHHHHHhcC---------------CcEEEEcCCHHHHHHHHc--------C
Q 024647           20 PEELFKFITSKTT--NHELAWDVGTGSGQAAASLSGIF---------------ENVIGTETSPKQIEFATK--------L   74 (265)
Q Consensus        20 ~~~l~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~~---------------~~v~~vD~s~~~~~~a~~--------~   74 (265)
                      |..+++.+.....  +..+|+|-.||+|.+...+.++.               ..+.|+|+++.+...|+-        .
T Consensus       147 P~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~  226 (425)
T d2okca1         147 PRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGT  226 (425)
T ss_dssp             CHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCS
T ss_pred             chhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCcc
Confidence            6778888777653  46799999999999998876532               248999999999988763        1


Q ss_pred             CCceEEecCCccchhhhhhccCCCCceeEEEeccccccC--C----------------hhHHHHHHHHHhcCCCcEEEEE
Q 024647           75 PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF--D----------------LPQFYNQVKWVLKKPNGVIATW  136 (265)
Q Consensus        75 ~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~--~----------------~~~~l~~~~~~Lk~pgG~l~~~  136 (265)
                      .+.....       +|.-.. .+...||+|+++-.+..-  .                ...++..+.+.|+ +||.+++.
T Consensus       227 ~~~~i~~-------~d~l~~-~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk-~~G~~~iI  297 (425)
T d2okca1         227 DRSPIVC-------EDSLEK-EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLK-TGGRAAVV  297 (425)
T ss_dssp             SCCSEEE-------CCTTTS-CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEE-EEEEEEEE
T ss_pred             ccceeec-------Cchhhh-hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcC-CCCeEEEE
Confidence            2333444       232222 245689999998865321  1                1249999999999 99999887


Q ss_pred             ecC
Q 024647          137 CYT  139 (265)
Q Consensus       137 ~~~  139 (265)
                      .+.
T Consensus       298 ~p~  300 (425)
T d2okca1         298 LPD  300 (425)
T ss_dssp             EEH
T ss_pred             ech
Confidence            663

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.95  E-value=2.5e-05  Score=58.84  Aligned_cols=102  Identities=18%  Similarity=0.145  Sum_probs=71.7

Q ss_pred             CCCCCeEEEEcCCc-chhHHHHHhcC-C-cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647           31 TTNHELAWDVGTGS-GQAAASLSGIF-E-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIA  107 (265)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~~-~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~  107 (265)
                      .+++++||-+|||. |..+..+++.. + +|+++|.++.-++.++++.....+...-+.....+.+. .....+|+|+-.
T Consensus        25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~-t~g~G~D~vid~  103 (174)
T d1jqba2          25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKL-TNGKGVDRVIMA  103 (174)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHH-TTTSCEEEEEEC
T ss_pred             CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHH-hhccCcceEEEc
Confidence            46778899999997 88888888764 3 69999999999999987543334332221111223333 234569999865


Q ss_pred             cccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                           ......++++.++++ |+|++++....
T Consensus       104 -----~g~~~~~~~a~~~~~-~~G~iv~~G~~  129 (174)
T d1jqba2         104 -----GGGSETLSQAVKMVK-PGGIISNINYH  129 (174)
T ss_dssp             -----SSCTTHHHHHHHHEE-EEEEEEECCCC
T ss_pred             -----cCCHHHHHHHHHHHh-cCCEEEEEeec
Confidence                 233568899999999 99999986543

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.92  E-value=6.8e-05  Score=55.91  Aligned_cols=103  Identities=12%  Similarity=0.039  Sum_probs=69.0

Q ss_pred             CCCCCeEEEEcCCc-chhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCce-EEecCCccchhhh-hhcc-CCCCceeEEE
Q 024647           31 TTNHELAWDVGTGS-GQAAASLSGI-FENVIGTETSPKQIEFATKLPNIR-YELTSPAMSIAEL-EQNV-AAQSTVDLVT  105 (265)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~~~d~-~~~~-~~~~~~Dlv~  105 (265)
                      .+++++||-+|||+ |.++..+++. +++|+++|.++.-++.++++..-. +..........+. +.+. .....+|+|+
T Consensus        24 ~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vi  103 (170)
T d1e3ja2          24 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTI  103 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEE
T ss_pred             CCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCceee
Confidence            46778999999996 7777777764 569999999999999998753222 2221111000111 1111 1235689998


Q ss_pred             eccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          106 IAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       106 ~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      -.     ...+..++.+.++|+ |+|++++....
T Consensus       104 d~-----~g~~~~~~~a~~~~~-~~G~iv~~G~~  131 (170)
T d1e3ja2         104 DC-----SGNEKCITIGINITR-TGGTLMLVGMG  131 (170)
T ss_dssp             EC-----SCCHHHHHHHHHHSC-TTCEEEECSCC
T ss_pred             ec-----CCChHHHHHHHHHHh-cCCceEEEecC
Confidence            64     344678999999999 99999986654

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.90  E-value=4.2e-05  Score=58.71  Aligned_cols=107  Identities=18%  Similarity=0.085  Sum_probs=72.5

Q ss_pred             hCCCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEe
Q 024647           30 KTTNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTI  106 (265)
Q Consensus        30 ~~~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~  106 (265)
                      ..+++++||.+|||+ |..+..+++. ++ +|+++|.++..++.|+++..........+.....+.++ .....+|+++-
T Consensus        22 ~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~-t~g~g~D~vid  100 (195)
T d1kola2          22 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAAL-LGEPEVDCAVD  100 (195)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHH-HSSSCEEEEEE
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHH-hCCCCcEEEEE
Confidence            346889999999998 7777777764 44 79999999999999998643333322221111222333 24456999995


Q ss_pred             ccc------ccc----CChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          107 AQA------MHW----FDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       107 ~~~------~~~----~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      .-.      .|+    ......++.+.++++ |||++++...
T Consensus       101 ~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r-~gG~v~~~G~  141 (195)
T d1kola2         101 AVGFEARGHGHEGAKHEAPATVLNSLMQVTR-VAGKIGIPGL  141 (195)
T ss_dssp             CCCTTCBCSSTTGGGSBCTTHHHHHHHHHEE-EEEEEEECSC
T ss_pred             CccccccCCcccceeecCcHHHHHHHHHHHh-cCCEEEEeee
Confidence            432      111    135679999999999 9999998654

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=9.1e-05  Score=55.33  Aligned_cols=103  Identities=10%  Similarity=-0.008  Sum_probs=69.3

Q ss_pred             CCCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhcc-CCCCceeEEEe
Q 024647           31 TTNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNV-AAQSTVDLVTI  106 (265)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~Dlv~~  106 (265)
                      ..++++||-+|||+ |..+..+++. ++ +|+++|.++.-++.|+++..-......-+......+.+. .....+|+|+.
T Consensus        24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid  103 (171)
T d1pl8a2          24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIE  103 (171)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEe
Confidence            46778999999997 6777777765 55 699999999999999986433333322111000011110 12346899887


Q ss_pred             ccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          107 AQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       107 ~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      .     ...+..++.+.+.++ +||++++....
T Consensus       104 ~-----~G~~~~~~~a~~~~~-~gG~iv~~G~~  130 (171)
T d1pl8a2         104 C-----TGAEASIQAGIYATR-SGGTLVLVGLG  130 (171)
T ss_dssp             C-----SCCHHHHHHHHHHSC-TTCEEEECSCC
T ss_pred             c-----cCCchhHHHHHHHhc-CCCEEEEEecC
Confidence            5     334678999999999 99999986654

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.81  E-value=7.4e-05  Score=56.45  Aligned_cols=101  Identities=13%  Similarity=0.031  Sum_probs=69.5

Q ss_pred             CCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCCccc---hhhhhhccCCCCceeEEE
Q 024647           32 TNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSPAMS---IAELEQNVAAQSTVDLVT  105 (265)
Q Consensus        32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~---~~d~~~~~~~~~~~Dlv~  105 (265)
                      +++++||-+|||+ |.++..+++. ++ +|+++|.++..++.++++.....+...-...   ...+.+. .....+|+|+
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~-~~~~g~Dvvi  105 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDI-THGRGADFIL  105 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHH-TTTSCEEEEE
T ss_pred             CCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHh-hCCCCceEEe
Confidence            5678999999996 8888888876 44 6999999999999999864333333221100   0112222 2345699998


Q ss_pred             eccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          106 IAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       106 ~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      ..     ...+..++.+.+.|+ +||++++....
T Consensus       106 d~-----vG~~~~~~~a~~~l~-~~G~iv~~G~~  133 (182)
T d1vj0a2         106 EA-----TGDSRALLEGSELLR-RGGFYSVAGVA  133 (182)
T ss_dssp             EC-----SSCTTHHHHHHHHEE-EEEEEEECCCC
T ss_pred             ec-----CCchhHHHHHHHHhc-CCCEEEEEeec
Confidence            64     233568899999999 99999876543

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.78  E-value=0.00012  Score=60.35  Aligned_cols=100  Identities=12%  Similarity=0.190  Sum_probs=71.7

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCC---cEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhccCCCCcee
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFE---NVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQNVAAQSTVD  102 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~~~~~~~~D  102 (265)
                      .++.+|||+.||+|.=|..+++...   .++++|+++.-+..++.      ..|+....       .|....+...+.||
T Consensus       115 ~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~-------~d~~~~~~~~~~fD  187 (313)
T d1ixka_         115 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFH-------SSSLHIGELNVEFD  187 (313)
T ss_dssp             CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEES-------SCGGGGGGGCCCEE
T ss_pred             CccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhcccccc-------cccccccccccccc
Confidence            5678999999999999999987643   59999999999887654      24555444       34444444567899


Q ss_pred             EEEeccc------c------ccC-Ch----------hHHHHHHHHHhcCCCcEEEEEecC
Q 024647          103 LVTIAQA------M------HWF-DL----------PQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       103 lv~~~~~------~------~~~-~~----------~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      .|++.-.      +      .|- ..          .+.+..+.+.|| |||+++..+..
T Consensus       188 ~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk-~gG~lVYsTCS  246 (313)
T d1ixka_         188 KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLK-PGGILVYSTCS  246 (313)
T ss_dssp             EEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEEEESC
T ss_pred             EEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeC-CCcEEEEeecc
Confidence            9997331      1      111 11          257889999999 99999887765

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.71  E-value=8.6e-05  Score=55.69  Aligned_cols=100  Identities=17%  Similarity=0.126  Sum_probs=70.2

Q ss_pred             CCCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647           31 TTNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIA  107 (265)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~  107 (265)
                      .+++++||-+|||. |.++..+++. +. .|+++|.++.-++.++++....++....+.....+.++  .++.+|+|+-.
T Consensus        26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~--t~gg~D~vid~  103 (174)
T d1f8fa2          26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEI--TDGGVNFALES  103 (174)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHH--TTSCEEEEEEC
T ss_pred             CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHH--cCCCCcEEEEc
Confidence            35778999999997 6677777764 44 57888999999999988644445543322122223333  34579999964


Q ss_pred             cccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                           ......++.+.++++ |+|++++...
T Consensus       104 -----~G~~~~~~~~~~~~~-~~G~i~~~G~  128 (174)
T d1f8fa2         104 -----TGSPEILKQGVDALG-ILGKIAVVGA  128 (174)
T ss_dssp             -----SCCHHHHHHHHHTEE-EEEEEEECCC
T ss_pred             -----CCcHHHHHHHHhccc-CceEEEEEee
Confidence                 344678899999999 9999987653

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.60  E-value=0.00051  Score=51.12  Aligned_cols=101  Identities=15%  Similarity=0.107  Sum_probs=70.3

Q ss_pred             CCCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647           31 TTNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIA  107 (265)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~  107 (265)
                      .+++++||-+|||+ |..+..+++. ++ .|+++|.++.-++.+++......+...-+......+ . .....+|+|+..
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~-~-~~~~g~d~vid~  107 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVME-L-TRGRGVNVAMDF  107 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHH-H-TTTCCEEEEEES
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHH-h-hCCCCceEEEEe
Confidence            46778999999997 6776777654 44 689999999999999886555555433211111111 1 234569999865


Q ss_pred             cccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                           ..-...++...+.|+ ++|++++....
T Consensus       108 -----~g~~~~~~~a~~~l~-~~G~iv~~G~~  133 (172)
T d1h2ba2         108 -----VGSQATVDYTPYLLG-RMGRLIIVGYG  133 (172)
T ss_dssp             -----SCCHHHHHHGGGGEE-EEEEEEECCCS
T ss_pred             -----cCcchHHHHHHHHHh-CCCEEEEEeCc
Confidence                 334568899999999 99999986643

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.60  E-value=0.00012  Score=54.23  Aligned_cols=99  Identities=14%  Similarity=0.113  Sum_probs=66.3

Q ss_pred             CCCCCeEEEEcCCc-chhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           31 TTNHELAWDVGTGS-GQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      .+++++||-+|||+ |.++..+++. +.+|+++|.++.-++.+++...........+.....+...  ..+..|.|.+. 
T Consensus        25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~--~~g~~~~i~~~-  101 (166)
T d1llua2          25 ARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRD--IGGAHGVLVTA-  101 (166)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHH--HSSEEEEEECC-
T ss_pred             CCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCccccccccchhHHHHHHHh--hcCCccccccc-
Confidence            46778899999997 8888888765 5689999999999999998644444443321111112221  12334444432 


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                           .....++.+.+.|+ |+|++++...
T Consensus       102 -----~~~~~~~~~~~~l~-~~G~iv~~G~  125 (166)
T d1llua2         102 -----VSNSAFGQAIGMAR-RGGTIALVGL  125 (166)
T ss_dssp             -----SCHHHHHHHHTTEE-EEEEEEECCC
T ss_pred             -----ccchHHHHHHHHhc-CCcEEEEEEe
Confidence                 22467889999999 9999987654

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=3.3e-05  Score=68.35  Aligned_cols=113  Identities=19%  Similarity=0.164  Sum_probs=74.6

Q ss_pred             cHHHHHHHHhhCC--CCCeEEEEcCCcchhHHHHHhcC--------------------CcEEEEcCCHHHHHHHHc---C
Q 024647           20 PEELFKFITSKTT--NHELAWDVGTGSGQAAASLSGIF--------------------ENVIGTETSPKQIEFATK---L   74 (265)
Q Consensus        20 ~~~l~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~~--------------------~~v~~vD~s~~~~~~a~~---~   74 (265)
                      |..+++.+.....  ++.+|+|-.||+|.+...+.++.                    ..+.|+|+++.+...|+-   .
T Consensus       149 P~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l  228 (524)
T d2ar0a1         149 PRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLL  228 (524)
T ss_dssp             CHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHT
T ss_pred             ccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHh
Confidence            6677777776643  45689999999999988765431                    248999999999987763   1


Q ss_pred             CC--------ceEEecCCccchhhhhhccCCCCceeEEEeccccc--cC-C------------hhHHHHHHHHHhcCCCc
Q 024647           75 PN--------IRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMH--WF-D------------LPQFYNQVKWVLKKPNG  131 (265)
Q Consensus        75 ~~--------~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~--~~-~------------~~~~l~~~~~~Lk~pgG  131 (265)
                      .+        ......+.      +..-......||+|+++-.+-  |- +            ...++..+.+.|+ +||
T Consensus       229 ~~~~~~i~~~~~~~~~~~------l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk-~gG  301 (524)
T d2ar0a1         229 HDIEGNLDHGGAIRLGNT------LGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLH-PGG  301 (524)
T ss_dssp             TTCCCBGGGTBSEEESCT------TSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEE-EEE
T ss_pred             hcccccccccchhhhhhh------hhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhcc-ccC
Confidence            11        11111110      000011345799999988552  11 1            1249999999999 999


Q ss_pred             EEEEEecC
Q 024647          132 VIATWCYT  139 (265)
Q Consensus       132 ~l~~~~~~  139 (265)
                      ++++..+.
T Consensus       302 r~aiIlP~  309 (524)
T d2ar0a1         302 RAAVVVPD  309 (524)
T ss_dssp             EEEEEEEH
T ss_pred             cEEEEEeh
Confidence            99987764

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.53  E-value=0.00023  Score=53.30  Aligned_cols=102  Identities=13%  Similarity=0.010  Sum_probs=71.0

Q ss_pred             CCCCCeEEEEcCCc-chhHHHHHhcC-C-cEEEEcCCHHHHHHHHcCCCceEEecCC-ccchhhhhhccCCCCceeEEEe
Q 024647           31 TTNHELAWDVGTGS-GQAAASLSGIF-E-NVIGTETSPKQIEFATKLPNIRYELTSP-AMSIAELEQNVAAQSTVDLVTI  106 (265)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~~-~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~Dlv~~  106 (265)
                      .+++++||-+|||+ |..+..+++.. + +|+++|+++.-++.++++.........- .......... ...+.+|+++-
T Consensus        26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~-~~~~G~d~vie  104 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITE-LTAGGVDYSLD  104 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHH-HHTSCBSEEEE
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhh-hhcCCCcEEEE
Confidence            35778999999998 88888888764 4 6999999999999999864444433211 0000111111 13457999986


Q ss_pred             ccccccCChhHHHHHHHHHhcCCC-cEEEEEecC
Q 024647          107 AQAMHWFDLPQFYNQVKWVLKKPN-GVIATWCYT  139 (265)
Q Consensus       107 ~~~~~~~~~~~~l~~~~~~Lk~pg-G~l~~~~~~  139 (265)
                      .     ...+..+.++.+.|+ +| |++++....
T Consensus       105 ~-----~G~~~~~~~a~~~~~-~g~G~~v~vG~~  132 (174)
T d1e3ia2         105 C-----AGTAQTLKAAVDCTV-LGWGSCTVVGAK  132 (174)
T ss_dssp             S-----SCCHHHHHHHHHTBC-TTTCEEEECCCS
T ss_pred             e-----cccchHHHHHHHHhh-cCCeEEEecCCC
Confidence            4     345679999999999 86 999886543

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.50  E-value=3.3e-05  Score=57.74  Aligned_cols=100  Identities=18%  Similarity=0.120  Sum_probs=66.3

Q ss_pred             hCCCCCeEEEEcCCc-chhHHHHHh-cCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647           30 KTTNHELAWDVGTGS-GQAAASLSG-IFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIA  107 (265)
Q Consensus        30 ~~~~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~  107 (265)
                      ..+++++||-+|||+ |.++..+++ .+++|+++|.++..++.++++..-.++...-.   .+...  ...+.+|+|+..
T Consensus        24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~---~~~~~--~~~~~~d~vi~~   98 (168)
T d1piwa2          24 GCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEE---GDWGE--KYFDTFDLIVVC   98 (168)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGT---SCHHH--HSCSCEEEEEEC
T ss_pred             CcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccch---HHHHH--hhhcccceEEEE
Confidence            346789999999995 888888775 46799999999999999987532233332110   11111  133579988864


Q ss_pred             cccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      -.-..   ...+..+.++|+ |+|++++...
T Consensus        99 ~~~~~---~~~~~~~~~~l~-~~G~iv~~G~  125 (168)
T d1piwa2          99 ASSLT---DIDFNIMPKAMK-VGGRIVSISI  125 (168)
T ss_dssp             CSCST---TCCTTTGGGGEE-EEEEEEECCC
T ss_pred             ecCCc---cchHHHHHHHhh-ccceEEEecc
Confidence            32111   113456789999 9999988654

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=0.00042  Score=51.64  Aligned_cols=98  Identities=13%  Similarity=0.089  Sum_probs=67.8

Q ss_pred             CCCCeEEEEcC-C-cchhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           32 TNHELAWDVGT-G-SGQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        32 ~~~~~vlDvGc-G-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      .++++||-.|+ | .|..+..+++. +.+|++++.+++.++.++++.........-......+... .....+|+|+...
T Consensus        27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~-t~~~g~d~v~d~~  105 (174)
T d1yb5a2          27 KAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKY-VGEKGIDIIIEML  105 (174)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHH-HCTTCEEEEEESC
T ss_pred             CCCCEEEEEeccccccccccccccccCcccccccccccccccccccCcccccccccccHHHHhhhh-hccCCceEEeecc
Confidence            57789999997 4 47888888765 5789999999998899887643344432211111112222 2456799999753


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      .      ...++...++|+ |+|+++...
T Consensus       106 g------~~~~~~~~~~l~-~~G~iv~~G  127 (174)
T d1yb5a2         106 A------NVNLSKDLSLLS-HGGRVIVVG  127 (174)
T ss_dssp             H------HHHHHHHHHHEE-EEEEEEECC
T ss_pred             c------HHHHHHHHhccC-CCCEEEEEe
Confidence            2      357889999999 999998764

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=0.00025  Score=57.48  Aligned_cols=101  Identities=11%  Similarity=0.121  Sum_probs=68.7

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhccCCCCceeE
Q 024647           32 TNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQNVAAQSTVDL  103 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dl  103 (265)
                      .++.+|||+.+|+|.=|..+++...  .|+++|+++.-+...++      ..++......     ...... ...+.||.
T Consensus       101 ~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~-----~~~~~~-~~~~~fd~  174 (284)
T d1sqga2         101 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDG-----RYPSQW-CGEQQFDR  174 (284)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCT-----TCTHHH-HTTCCEEE
T ss_pred             cccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccc-----cccchh-cccccccE
Confidence            5678999999999999999988764  59999999999887654      1333322211     111111 24567999


Q ss_pred             EEecc------ccc--------cCC---------hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          104 VTIAQ------AMH--------WFD---------LPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       104 v~~~~------~~~--------~~~---------~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      |++.-      .+.        |-.         ....+..+.+.|| |||+++..+..
T Consensus       175 IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk-~gG~lvYsTCS  232 (284)
T d1sqga2         175 ILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLK-TGGTLVYATCS  232 (284)
T ss_dssp             EEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEE-EEEEEEEEESC
T ss_pred             EEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcC-CCceEEEeeec
Confidence            99743      111        110         1257888899999 99999987775

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.32  E-value=0.00056  Score=50.45  Aligned_cols=100  Identities=13%  Similarity=0.067  Sum_probs=65.0

Q ss_pred             CCCCCeEEEEcCCc-chhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           31 TTNHELAWDVGTGS-GQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      ..++++||-.|||+ |..+..+++. +++|+++|.++.-++.++++.-.......-......+...  ..+..|.|++. 
T Consensus        25 ~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~-  101 (168)
T d1rjwa2          25 AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEK--VGGVHAAVVTA-  101 (168)
T ss_dssp             CCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHH--HSSEEEEEESS-
T ss_pred             CCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccc--cCCCceEEeec-
Confidence            46778999999997 6666666665 5789999999999999988533333332211111112222  23344444432 


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                           --...+..+.+.|+ |+|.+++....
T Consensus       102 -----~~~~~~~~a~~~l~-~~G~i~~~g~~  126 (168)
T d1rjwa2         102 -----VSKPAFQSAYNSIR-RGGACVLVGLP  126 (168)
T ss_dssp             -----CCHHHHHHHHHHEE-EEEEEEECCCC
T ss_pred             -----CCHHHHHHHHHHhc-cCCceEecccc
Confidence                 12578999999999 99999886543

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.00084  Score=54.49  Aligned_cols=69  Identities=7%  Similarity=0.123  Sum_probs=50.6

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhc---CCcEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhccCC---CC
Q 024647           32 TNHELAWDVGTGSGQAAASLSGI---FENVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQNVAA---QS   99 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~~~~---~~   99 (265)
                      .++.+|||++||+|.-|..+++.   ...|+++|+++.-++.+++      ..++.+..       .|...+...   .+
T Consensus        93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~-------~d~~~~~~~~~~~~  165 (293)
T d2b9ea1          93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAE-------EDFLAVSPSDPRYH  165 (293)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEE-------CCGGGSCTTCGGGT
T ss_pred             CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeee-------hhhhhhcccccccc
Confidence            56788999999999999988865   3469999999998887664      25666666       344443221   25


Q ss_pred             ceeEEEec
Q 024647          100 TVDLVTIA  107 (265)
Q Consensus       100 ~~Dlv~~~  107 (265)
                      .||.|++.
T Consensus       166 ~fD~VL~D  173 (293)
T d2b9ea1         166 EVHYILLD  173 (293)
T ss_dssp             TEEEEEEC
T ss_pred             eeeEEeec
Confidence            69999974

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.23  E-value=0.00031  Score=59.07  Aligned_cols=100  Identities=10%  Similarity=0.119  Sum_probs=67.4

Q ss_pred             CCCeEEEEcCCcchhHHHHHhc-CC-cEEEEcCCHHHHHHHHcC------CCc------eEEec--CCccchhhhhhc-c
Q 024647           33 NHELAWDVGTGSGQAAASLSGI-FE-NVIGTETSPKQIEFATKL------PNI------RYELT--SPAMSIAELEQN-V   95 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~------~~~------~~~~~--~~~~~~~d~~~~-~   95 (265)
                      ++.+|||..||+|..+...+.. +. +|+++|+|+..++.+++.      .+.      .....  .......|+..+ .
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            4578999999999999987653 33 699999999999998752      110      00000  011111333222 1


Q ss_pred             CCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEe
Q 024647           96 AAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus        96 ~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      ...+.||+|...-    + .+..+++.+.+.++ .||.|.+..
T Consensus       125 ~~~~~fDvIDiDP----fGs~~pfldsAi~a~~-~~Gll~vTa  162 (375)
T d2dula1         125 ERHRYFHFIDLDP----FGSPMEFLDTALRSAK-RRGILGVTA  162 (375)
T ss_dssp             HSTTCEEEEEECC----SSCCHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             hhcCcCCcccCCC----CCCcHHHHHHHHHHhc-cCCEEEEEe
Confidence            2345799998763    3 56789999999999 899998743

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.19  E-value=0.00027  Score=55.86  Aligned_cols=101  Identities=15%  Similarity=0.071  Sum_probs=62.1

Q ss_pred             HHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc-------C--------CCceEEecCCc
Q 024647           21 EELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK-------L--------PNIRYELTSPA   85 (265)
Q Consensus        21 ~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-------~--------~~~~~~~~~~~   85 (265)
                      +.+.+.+--......+|||.-||.|..+..++..+++|+++|.++.+....+.       .        .+++++.++. 
T Consensus        76 ~~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds-  154 (250)
T d2oyra1          76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS-  154 (250)
T ss_dssp             SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH-
T ss_pred             hHHHHHhcCCCCCCCEEEECCCcccHHHHHHHhCCCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcH-
Confidence            34444443222334589999999999999999999999999999987654332       1        2456666432 


Q ss_pred             cchhhhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhc
Q 024647           86 MSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLK  127 (265)
Q Consensus        86 ~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk  127 (265)
                           .+.+....++||+|+..-.+..-...+..++-.++|+
T Consensus       155 -----~~~L~~~~~~~DvIYlDPMFp~~~Ksa~~kk~m~~l~  191 (250)
T d2oyra1         155 -----LTALTDITPRPQVVYLDPMFPHKQKSALVKKEMRVFQ  191 (250)
T ss_dssp             -----HHHSTTCSSCCSEEEECCCCCCCCC-----HHHHHHH
T ss_pred             -----HHHHhccCCCCCEEEECCCCccccccccchhHHHHHH
Confidence                 2333334567999999877654433333333333333

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=97.16  E-value=0.0015  Score=48.63  Aligned_cols=103  Identities=16%  Similarity=0.009  Sum_probs=66.8

Q ss_pred             CCCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCCcc-chhhhhhccCCCCceeEEEe
Q 024647           31 TTNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSPAM-SIAELEQNVAAQSTVDLVTI  106 (265)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~Dlv~~  106 (265)
                      .+++++||-+|||. |..+..+++. ++ +|+++|.++.-++.++++.....+...-.. ........ ..++.+|+|+.
T Consensus        25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~-~~~~G~d~vid  103 (174)
T d1p0fa2          25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICE-KTNGGVDYAVE  103 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHH-HTTSCBSEEEE
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHH-hcCCCCcEEEE
Confidence            46789999999997 6666667664 44 699999999999999986544444321100 00111111 23456899886


Q ss_pred             ccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          107 AQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       107 ~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      .     ......+.+....+++++|++++....
T Consensus       104 ~-----~g~~~~~~~~~~~~~~~~G~~v~vG~~  131 (174)
T d1p0fa2         104 C-----AGRIETMMNALQSTYCGSGVTVVLGLA  131 (174)
T ss_dssp             C-----SCCHHHHHHHHHTBCTTTCEEEECCCC
T ss_pred             c-----CCCchHHHHHHHHHHHhcCceEEEEEe
Confidence            5     334567777777776256998876653

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.14  E-value=0.00049  Score=51.00  Aligned_cols=96  Identities=19%  Similarity=0.135  Sum_probs=68.3

Q ss_pred             CCCCCeEEEEcCCc-chhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           31 TTNHELAWDVGTGS-GQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      .+++++||-+|||. |.++..+++. +++++++|.+++-++.++++....+....-    .+...  ...+.+|.++..-
T Consensus        28 ~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~----~~~~~--~~~~~~D~vid~~  101 (168)
T d1uufa2          28 AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRN----ADEMA--AHLKSFDFILNTV  101 (168)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTC----HHHHH--TTTTCEEEEEECC
T ss_pred             CCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEECch----hhHHH--HhcCCCceeeeee
Confidence            46788999999997 8888888875 568889999999888888754434444221    22221  2345799988652


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                           .-...++...++|+ ++|++++...
T Consensus       102 -----g~~~~~~~~~~~l~-~~G~iv~~G~  125 (168)
T d1uufa2         102 -----AAPHNLDDFTTLLK-RDGTMTLVGA  125 (168)
T ss_dssp             -----SSCCCHHHHHTTEE-EEEEEEECCC
T ss_pred             -----ecchhHHHHHHHHh-cCCEEEEecc
Confidence                 23456888899999 9999998654

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.11  E-value=0.00038  Score=57.37  Aligned_cols=64  Identities=13%  Similarity=0.094  Sum_probs=48.1

Q ss_pred             cHHHHHHHHhhC--------CCCCeEEEEcCCcchhHHHHHhcC-C-cEEEEcCCHHHHHHHHcC---CCceEEecC
Q 024647           20 PEELFKFITSKT--------TNHELAWDVGTGSGQAAASLSGIF-E-NVIGTETSPKQIEFATKL---PNIRYELTS   83 (265)
Q Consensus        20 ~~~l~~~l~~~~--------~~~~~vlDvGcG~G~~~~~l~~~~-~-~v~~vD~s~~~~~~a~~~---~~~~~~~~~   83 (265)
                      .+.+++.+....        ..+..|||||+|.|.+|..|.+++ + +|+++|+++...+..+..   .++..+..+
T Consensus        22 d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D   98 (322)
T d1i4wa_          22 NPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRD   98 (322)
T ss_dssp             CHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSC
T ss_pred             CHHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCCCcEEEeCc
Confidence            455666665432        245789999999999999999874 3 799999999999988752   456666644

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.10  E-value=0.0009  Score=49.49  Aligned_cols=102  Identities=17%  Similarity=0.114  Sum_probs=67.5

Q ss_pred             CCCCCeEEEEcC-C-cchhHHHHHh-cC-CcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEe
Q 024647           31 TTNHELAWDVGT-G-SGQAAASLSG-IF-ENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTI  106 (265)
Q Consensus        31 ~~~~~~vlDvGc-G-~G~~~~~l~~-~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~  106 (265)
                      .+++++||-+|| | .|..+..+++ .+ .+|+++|.++.-++.++++.-...+....+.......+. .....+|+|+.
T Consensus        25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~-~~~~~~d~vid  103 (170)
T d1jvba2          25 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRI-TESKGVDAVID  103 (170)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHH-TTTSCEEEEEE
T ss_pred             CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHH-hhcccchhhhc
Confidence            457789999997 4 3666666655 44 479999999999999987532233333221111222222 23456999987


Q ss_pred             ccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          107 AQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       107 ~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      .     ..-...++.+.+.++ |||++++....
T Consensus       104 ~-----~g~~~~~~~a~~~l~-~~G~iv~~G~~  130 (170)
T d1jvba2         104 L-----NNSEKTLSVYPKALA-KQGKYVMVGLF  130 (170)
T ss_dssp             S-----CCCHHHHTTGGGGEE-EEEEEEECCSS
T ss_pred             c-----cccchHHHhhhhhcc-cCCEEEEeccc
Confidence            4     234567888899999 99999876543

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.88  E-value=0.0036  Score=46.54  Aligned_cols=98  Identities=18%  Similarity=0.096  Sum_probs=66.0

Q ss_pred             CCCCeEEEEcC-C-cchhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           32 TNHELAWDVGT-G-SGQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        32 ~~~~~vlDvGc-G-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      +++++||-.|. | .|.++..+++. +.++++++-+++-.+.+++..........-+.....+.+. .....+|+|+...
T Consensus        24 ~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~-t~~~g~d~v~d~~  102 (183)
T d1pqwa_          24 SPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILEL-TDGYGVDVVLNSL  102 (183)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHH-TTTCCEEEEEECC
T ss_pred             CCCCEEEEECCCCCcccccchhhccccccceeeecccccccccccccccccccCCccCHHHHHHHH-hCCCCEEEEEecc
Confidence            56788888773 4 37888888765 5789988888888898887533333332221111222222 2456799999753


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      .      ...++++.++|+ ++|+++...
T Consensus       103 g------~~~~~~~~~~l~-~~G~~v~~G  124 (183)
T d1pqwa_         103 A------GEAIQRGVQILA-PGGRFIELG  124 (183)
T ss_dssp             C------THHHHHHHHTEE-EEEEEEECS
T ss_pred             c------chHHHHHHHHhc-CCCEEEEEc
Confidence            3      357888999999 999998753

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=96.87  E-value=0.00056  Score=55.62  Aligned_cols=56  Identities=18%  Similarity=0.216  Sum_probs=50.5

Q ss_pred             CCcHHHHHHHHhhC-CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc
Q 024647           18 NYPEELFKFITSKT-TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK   73 (265)
Q Consensus        18 ~y~~~l~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~   73 (265)
                      ..|.+|++++.... ++++.|||-=||+|+.+.+..+.+.+.+|+|+++..++.+++
T Consensus       234 ~kP~~L~~rlI~~~s~~gdiVlDpF~GSGTT~~AA~~lgR~~Ig~El~~~y~~~a~~  290 (320)
T d1booa_         234 RFPAKLPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAF  290 (320)
T ss_dssp             CCCTHHHHHHHHHHCCTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHG
T ss_pred             cCchHHHHHhhhhcccCCCEEEecCCCCcHHHHHHHHcCCcEEEEeCCHHHHHHHHH
Confidence            45889999987764 788999999999999999999999999999999999999875

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.75  E-value=0.0028  Score=47.22  Aligned_cols=102  Identities=11%  Similarity=0.004  Sum_probs=63.5

Q ss_pred             CCCCCeEEEEcCCc-chhHHHHHhc-C-CcEEEEcCCHHHHHHHHcCCCceEEecC-CccchhhhhhccCCCCceeEEEe
Q 024647           31 TTNHELAWDVGTGS-GQAAASLSGI-F-ENVIGTETSPKQIEFATKLPNIRYELTS-PAMSIAELEQNVAAQSTVDLVTI  106 (265)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~Dlv~~  106 (265)
                      .+++++|+=+|||. |..+..+++. + .+|+++|++++-++.|+++.....+... ........... .....+|.++.
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~-~~g~G~d~vi~  105 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSE-MTGNNVGYTFE  105 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHH-HHTSCCCEEEE
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHH-hccccceEEEE
Confidence            46788999999997 6666666665 3 4799999999999999986443333311 10000111111 13456898886


Q ss_pred             ccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          107 AQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       107 ~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      .     ......+.+....+.+++|++++...
T Consensus       106 ~-----~g~~~~~~~a~~~~~~~~G~~v~vG~  132 (176)
T d1d1ta2         106 V-----IGHLETMIDALASCHMNYGTSVVVGV  132 (176)
T ss_dssp             C-----SCCHHHHHHHHTTSCTTTCEEEECSC
T ss_pred             e-----CCchHHHHHHHHHhhcCCeEEEEEEc
Confidence            5     33345555555555415699988654

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=96.68  E-value=0.0014  Score=51.48  Aligned_cols=56  Identities=23%  Similarity=0.305  Sum_probs=50.8

Q ss_pred             CCcHHHHHHHHhhC-CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc
Q 024647           18 NYPEELFKFITSKT-TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK   73 (265)
Q Consensus        18 ~y~~~l~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~   73 (265)
                      ..|.+|++++.... .+++.|||-=||+|+.+.+..+.+.+.+|+|+++.-++.|++
T Consensus       196 ~kP~~L~~~lI~~~s~~gd~VlDpF~GSGTT~~aa~~~~R~~ig~El~~~y~~~a~~  252 (256)
T d1g60a_         196 PKPRDLIERIIRASSNPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANF  252 (256)
T ss_dssp             CCCHHHHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             ccchhHHHHHHHHhCCCCCEEEECCCCchHHHHHHHHcCCeEEEEeCCHHHHHHHHH
Confidence            47899999988765 688999999999999999999999999999999999998874

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=96.66  E-value=0.0047  Score=45.75  Aligned_cols=98  Identities=13%  Similarity=0.078  Sum_probs=67.2

Q ss_pred             CCCCeEEEEcCCc--chhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           32 TNHELAWDVGTGS--GQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        32 ~~~~~vlDvGcG~--G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      +++++||-.|+|.  |.....+++. +++|++++.|+.-++.++++..-..+...-+.....+.++ .....+|+|+..-
T Consensus        27 ~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~~vi~~~~~d~~~~v~~~-t~g~g~d~v~d~~  105 (179)
T d1qora2          27 KPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEI-TGGKKVRVVYDSV  105 (179)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHH-TTTCCEEEEEECS
T ss_pred             CCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCeEEEECCCCCHHHHHHHH-hCCCCeEEEEeCc
Confidence            5678899887664  6777777765 6799999999999999887543334432221112233333 2456799988653


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      .      ...+......|+ ++|++++..
T Consensus       106 g------~~~~~~~~~~l~-~~G~~v~~g  127 (179)
T d1qora2         106 G------RDTWERSLDCLQ-RRGLMVSFG  127 (179)
T ss_dssp             C------GGGHHHHHHTEE-EEEEEEECC
T ss_pred             c------HHHHHHHHHHHh-cCCeeeecc
Confidence            2      346788999999 999987644

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=96.65  E-value=0.0012  Score=54.99  Aligned_cols=102  Identities=12%  Similarity=0.147  Sum_probs=62.4

Q ss_pred             CCCeEEEEcCCcchhHHHHHhc--------------C--C--cEEEEcCCHHHHHHH-HcC------CCceEEecCCccc
Q 024647           33 NHELAWDVGTGSGQAAASLSGI--------------F--E--NVIGTETSPKQIEFA-TKL------PNIRYELTSPAMS   87 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~--------------~--~--~v~~vD~s~~~~~~a-~~~------~~~~~~~~~~~~~   87 (265)
                      ...+|.|+||.+|..|..+...              .  +  +|.--|.-..=-... +.+      ...-|..+-+   
T Consensus        51 ~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvp---  127 (359)
T d1m6ex_          51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVP---  127 (359)
T ss_dssp             SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEE---
T ss_pred             CceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecC---
Confidence            3467899999999888654321              1  1  255556544333222 111      1112333222   


Q ss_pred             hhhhhhccCCCCceeEEEeccccccCCh----------------------------------hHHHHHHHHHhcCCCcEE
Q 024647           88 IAELEQNVAAQSTVDLVTIAQAMHWFDL----------------------------------PQFYNQVKWVLKKPNGVI  133 (265)
Q Consensus        88 ~~d~~~~~~~~~~~Dlv~~~~~~~~~~~----------------------------------~~~l~~~~~~Lk~pgG~l  133 (265)
                       +.+..--+|+++.|+++++.++||+..                                  ..+|+.=.+=|+ |||.+
T Consensus       128 -GSFY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv-~GG~m  205 (359)
T d1m6ex_         128 -GSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVV-PGGRM  205 (359)
T ss_dssp             -SCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBC-TTCEE
T ss_pred             -CchhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcEE
Confidence             445544479999999999999999731                                  135666677789 99999


Q ss_pred             EEEecC
Q 024647          134 ATWCYT  139 (265)
Q Consensus       134 ~~~~~~  139 (265)
                      ++...+
T Consensus       206 vl~~~g  211 (359)
T d1m6ex_         206 VLTILG  211 (359)
T ss_dssp             EEEEEE
T ss_pred             EEEEec
Confidence            986553

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.59  E-value=0.0065  Score=44.77  Aligned_cols=99  Identities=10%  Similarity=-0.009  Sum_probs=65.3

Q ss_pred             CCCCCeEEEEcCCc-chhHHHHHhc-C-CcEEEEcCCHHHHHHHHcCCCceEEecCC--ccchhhhhhccCCCCceeEEE
Q 024647           31 TTNHELAWDVGTGS-GQAAASLSGI-F-ENVIGTETSPKQIEFATKLPNIRYELTSP--AMSIAELEQNVAAQSTVDLVT  105 (265)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~Dlv~  105 (265)
                      .+++++||-.|||. |.++..+++. + ..|+++|.++.-++.++++.....+...-  +.....+...  ..+.+|+|+
T Consensus        26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~--~~~g~D~vi  103 (176)
T d2fzwa2          26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEM--TDGGVDYSF  103 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHH--TTSCBSEEE
T ss_pred             CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHH--cCCCCcEee
Confidence            46788999999985 5566666654 4 36999999999999998754444433210  1111111112  345799999


Q ss_pred             eccccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647          106 IAQAMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       106 ~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      ..     .....+++.+..+++ +||.+++..
T Consensus       104 d~-----~G~~~~~~~~~~~~~-~g~~~~~v~  129 (176)
T d2fzwa2         104 EC-----IGNVKVMRAALEACH-KGWGVSVVV  129 (176)
T ss_dssp             EC-----SCCHHHHHHHHHTBC-TTTCEEEEC
T ss_pred             ec-----CCCHHHHHHHHHhhc-CCceeEEEE
Confidence            75     344578899999999 888876543

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.32  E-value=0.0027  Score=50.46  Aligned_cols=57  Identities=21%  Similarity=0.179  Sum_probs=51.0

Q ss_pred             CCCcHHHHHHHHhhC-CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc
Q 024647           17 PNYPEELFKFITSKT-TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK   73 (265)
Q Consensus        17 p~y~~~l~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~   73 (265)
                      ...|.+|++++.... .+++.|||-=||+|+.+.+..+.+.+.+|+|+++...+.|++
T Consensus       190 ~~kP~~L~~~~I~~~s~~gdiVLDpF~GSGTT~~Aa~~lgR~~ig~El~~~y~~~a~~  247 (279)
T d1eg2a_         190 TQKPAAVIERLVRALSHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQK  247 (279)
T ss_dssp             TCCCHHHHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHH
T ss_pred             cccchhHHHHHHHhhcCCCCEEEecCCCCcHHHHHHHHhCCeEEEEeCCHHHHHHHHH
Confidence            356899999987764 688999999999999999999999999999999999998875

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=96.19  E-value=0.015  Score=43.05  Aligned_cols=98  Identities=17%  Similarity=0.111  Sum_probs=67.6

Q ss_pred             CCCCeEEEEcCCc--chhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           32 TNHELAWDVGTGS--GQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        32 ~~~~~vlDvGcG~--G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      +++++||-.|++.  |..+..+++. +++|+++.-+++-++.+++...-..+...-+......... .....+|+|+-.-
T Consensus        28 ~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~-~~~~Gvd~v~D~v  106 (182)
T d1v3va2          28 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKK-ASPDGYDCYFDNV  106 (182)
T ss_dssp             CSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHH-HCTTCEEEEEESS
T ss_pred             CCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHH-hhcCCCceeEEec
Confidence            5778999888865  5777777765 6799999999999998887644444443222111222222 2445799998752


Q ss_pred             ccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647          109 AMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                           . .+.+++..+.|+ ++|++++..
T Consensus       107 -----G-~~~~~~~~~~l~-~~G~~v~~G  128 (182)
T d1v3va2         107 -----G-GEFLNTVLSQMK-DFGKIAICG  128 (182)
T ss_dssp             -----C-HHHHHHHGGGEE-EEEEEEECC
T ss_pred             -----C-chhhhhhhhhcc-CCCeEEeec
Confidence                 2 468899999999 999998754

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.10  E-value=0.012  Score=42.87  Aligned_cols=86  Identities=15%  Similarity=0.084  Sum_probs=57.8

Q ss_pred             CeEEEEcCCc--chhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecccccc
Q 024647           35 ELAWDVGTGS--GQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHW  112 (265)
Q Consensus        35 ~~vlDvGcG~--G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~  112 (265)
                      ++|.=||+|.  +.+++.|.+.+.+|++.|.+++.++.+++...+....       .+.+..    ...|+|+.+-.  .
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~-------~~~~~~----~~~DiIilavp--~   67 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAG-------QDLSLL----QTAKIIFLCTP--I   67 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEE-------SCGGGG----TTCSEEEECSC--H
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceee-------eecccc----cccccccccCc--H
Confidence            4577789985  3566778888899999999999999888644333222       222322    35799987532  1


Q ss_pred             CChhHHHHHHHHHhcCCCcEEE
Q 024647          113 FDLPQFYNQVKWVLKKPNGVIA  134 (265)
Q Consensus       113 ~~~~~~l~~~~~~Lk~pgG~l~  134 (265)
                      -....+++++...|+ ++..++
T Consensus        68 ~~~~~vl~~l~~~l~-~~~iv~   88 (165)
T d2f1ka2          68 QLILPTLEKLIPHLS-PTAIVT   88 (165)
T ss_dssp             HHHHHHHHHHGGGSC-TTCEEE
T ss_pred             hhhhhhhhhhhhhcc-ccccee
Confidence            133468888888888 666554

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.07  E-value=0.0045  Score=45.72  Aligned_cols=93  Identities=16%  Similarity=0.127  Sum_probs=62.1

Q ss_pred             CCCCCeEEEEcC-Cc-chhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647           31 TTNHELAWDVGT-GS-GQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIA  107 (265)
Q Consensus        31 ~~~~~~vlDvGc-G~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~  107 (265)
                      ..++++||-.|+ |. |..+..+++. +.+|++++.+++-++.+++...-..... .    ...... .....+|+|+-.
T Consensus        25 ~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~-~----~~~~~~-~~~~g~D~v~d~   98 (171)
T d1iz0a2          25 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATY-A----EVPERA-KAWGGLDLVLEV   98 (171)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEG-G----GHHHHH-HHTTSEEEEEEC
T ss_pred             CCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeeeh-h----hhhhhh-hccccccccccc
Confidence            467888998884 54 7777778775 6789999999998888887532222221 1    111222 134569998863


Q ss_pred             cccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647          108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      .     .  ..+..+.+.|+ |+|+++...
T Consensus        99 ~-----G--~~~~~~~~~l~-~~G~~v~~G  120 (171)
T d1iz0a2          99 R-----G--KEVEESLGLLA-HGGRLVYIG  120 (171)
T ss_dssp             S-----C--TTHHHHHTTEE-EEEEEEEC-
T ss_pred             c-----c--hhHHHHHHHHh-cCCcEEEEe
Confidence            2     1  24678899999 999998754

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=96.01  E-value=0.03  Score=41.03  Aligned_cols=99  Identities=12%  Similarity=0.008  Sum_probs=62.4

Q ss_pred             CCCCCeEEEEcCCc-chhHHHHHhc-C-CcEEEEcCCHHHHHHHHcCCCceEEec-CC-ccchhhhhhccCCCCceeEEE
Q 024647           31 TTNHELAWDVGTGS-GQAAASLSGI-F-ENVIGTETSPKQIEFATKLPNIRYELT-SP-AMSIAELEQNVAAQSTVDLVT  105 (265)
Q Consensus        31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~-~~~~~d~~~~~~~~~~~Dlv~  105 (265)
                      .+++++||-+|||. |.....+++. + .+|+++|.++.-++.+++......+.. +. ..........  ..+.+|+|+
T Consensus        26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~--~~~G~D~vi  103 (176)
T d2jhfa2          26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEM--SNGGVDFSF  103 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHH--TTSCBSEEE
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHH--hcCCCCEEE
Confidence            46788999999986 3444444444 4 479999999999999988644433331 11 0111111222  445799999


Q ss_pred             eccccccCChhHHHHHHHHHhcCCC-cEEEEEe
Q 024647          106 IAQAMHWFDLPQFYNQVKWVLKKPN-GVIATWC  137 (265)
Q Consensus       106 ~~~~~~~~~~~~~l~~~~~~Lk~pg-G~l~~~~  137 (265)
                      ..     ......+..+...++ ++ |.+++..
T Consensus       104 d~-----~G~~~~~~~a~~~~~-~~~g~~~~~~  130 (176)
T d2jhfa2         104 EV-----IGRLDTMVTALSCCQ-EAYGVSVIVG  130 (176)
T ss_dssp             EC-----SCCHHHHHHHHHHBC-TTTCEEEECS
T ss_pred             ec-----CCchhHHHHHHHHHh-cCCcceEEec
Confidence            75     334567888888888 66 5555543

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=95.94  E-value=0.0028  Score=46.57  Aligned_cols=94  Identities=16%  Similarity=0.130  Sum_probs=64.6

Q ss_pred             CCCeEEEEcCCc-chhHHHHHh-cCCcEEEEcCCHHHHHHHHcC--CCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           33 NHELAWDVGTGS-GQAAASLSG-IFENVIGTETSPKQIEFATKL--PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~--~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      ++.+|+-+|+|. |..+...+. .+++|++.|.+++.+++.+..  .++.....+-    ..+++.   -...|+|+..-
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~----~~l~~~---~~~aDivI~aa  103 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNS----AEIETA---VAEADLLIGAV  103 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCH----HHHHHH---HHTCSEEEECC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhh----hhHHHh---hccCcEEEEee
Confidence            468899999997 777777665 468999999999999887652  3455555332    222222   12579999865


Q ss_pred             ccccC-ChhHHHHHHHHHhcCCCcEEE
Q 024647          109 AMHWF-DLPQFYNQVKWVLKKPNGVIA  134 (265)
Q Consensus       109 ~~~~~-~~~~~l~~~~~~Lk~pgG~l~  134 (265)
                      .+.=- .|.-.-+++.+.+| ||..++
T Consensus       104 lipG~~aP~lIt~~mv~~Mk-~GSVIV  129 (168)
T d1pjca1         104 LVPGRRAPILVPASLVEQMR-TGSVIV  129 (168)
T ss_dssp             CCTTSSCCCCBCHHHHTTSC-TTCEEE
T ss_pred             ecCCcccCeeecHHHHhhcC-CCcEEE
Confidence            43222 34456788999999 888776

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=95.68  E-value=0.034  Score=40.61  Aligned_cols=101  Identities=13%  Similarity=0.046  Sum_probs=61.5

Q ss_pred             CCCCCeEEEEcCCcc-hhHHHHHh-cCC-cEEEEcCCHHHHHHHHcCCCceEEecCCcc-chhhhhhccCCCCceeEEEe
Q 024647           31 TTNHELAWDVGTGSG-QAAASLSG-IFE-NVIGTETSPKQIEFATKLPNIRYELTSPAM-SIAELEQNVAAQSTVDLVTI  106 (265)
Q Consensus        31 ~~~~~~vlDvGcG~G-~~~~~l~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~Dlv~~  106 (265)
                      .+++++||-+|||.+ ..+..+++ .++ +|+++|.+++-++.++++.-...+...-+. ........ ...+.+|+|+-
T Consensus        26 ~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~-~~~~G~d~vid  104 (175)
T d1cdoa2          26 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSK-MTNGGVDFSLE  104 (175)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHH-HHTSCBSEEEE
T ss_pred             CCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHh-hccCCcceeee
Confidence            467889999999984 44444444 344 699999999999999986544444321100 00111111 23456899986


Q ss_pred             ccccccCChhHHHHHHHHHhcCCC-cEEEEEec
Q 024647          107 AQAMHWFDLPQFYNQVKWVLKKPN-GVIATWCY  138 (265)
Q Consensus       107 ~~~~~~~~~~~~l~~~~~~Lk~pg-G~l~~~~~  138 (265)
                      .     ......+..+..+++ +| |.+++...
T Consensus       105 ~-----~G~~~~~~~a~~~~~-~g~~~~~~~g~  131 (175)
T d1cdoa2         105 C-----VGNVGVMRNALESCL-KGWGVSVLVGW  131 (175)
T ss_dssp             C-----SCCHHHHHHHHHTBC-TTTCEEEECSC
T ss_pred             e-----cCCHHHHHHHHHHhh-CCCcceeEEEe
Confidence            5     334567788888877 55 55544333

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.33  E-value=0.043  Score=39.86  Aligned_cols=88  Identities=20%  Similarity=0.278  Sum_probs=57.4

Q ss_pred             eEEEEcCCc--chhHHHHHhcCC--cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccccc
Q 024647           36 LAWDVGTGS--GQAAASLSGIFE--NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMH  111 (265)
Q Consensus        36 ~vlDvGcG~--G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~  111 (265)
                      +|+=||||.  |.+++.|.+.+.  +|+++|.+++.++.+++...+......       ....  .....|+|+.....+
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~-------~~~~--~~~~~dlIila~p~~   73 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTS-------IAKV--EDFSPDFVMLSSPVR   73 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESC-------GGGG--GGTCCSEEEECSCHH
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhh-------hhhh--hccccccccccCCch
Confidence            477899996  456667777664  699999999999999875443333311       1111  223579998763321


Q ss_pred             cCChhHHHHHHHHHhcCCCcEEEE
Q 024647          112 WFDLPQFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus       112 ~~~~~~~l~~~~~~Lk~pgG~l~~  135 (265)
                        ....++.++...++ ++..+.-
T Consensus        74 --~~~~vl~~l~~~~~-~~~ii~d   94 (171)
T d2g5ca2          74 --TFREIAKKLSYILS-EDATVTD   94 (171)
T ss_dssp             --HHHHHHHHHHHHSC-TTCEEEE
T ss_pred             --hhhhhhhhhhcccc-ccccccc
Confidence              23457888888888 7765543

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=94.96  E-value=0.017  Score=42.85  Aligned_cols=100  Identities=14%  Similarity=0.101  Sum_probs=62.0

Q ss_pred             CCCeEEEEcCCc-chhHHHHHh-cCCcEEEEcCCHHHHHHHHcCCCceEEecC------Cc------------cchhhhh
Q 024647           33 NHELAWDVGTGS-GQAAASLSG-IFENVIGTETSPKQIEFATKLPNIRYELTS------PA------------MSIAELE   92 (265)
Q Consensus        33 ~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~------~~------------~~~~d~~   92 (265)
                      ++.+||-||+|. |..+...+. .++.|+++|.++..+++.+.+- -.|+...      .+            +.....+
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~-~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~  106 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLG-GKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  106 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTT-CEECCC-----------------------CCHHH
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhh-cceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence            567899999997 766666665 5789999999999999888641 1111100      00            0000000


Q ss_pred             hccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEE
Q 024647           93 QNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIA  134 (265)
Q Consensus        93 ~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~  134 (265)
                      .+...-...|+|+..-.+.-- .|.-+-+++.+.+| ||.+++
T Consensus       107 ~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk-~GSVIV  148 (183)
T d1l7da1         107 AVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMK-PGSVII  148 (183)
T ss_dssp             HHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSC-TTCEEE
T ss_pred             HHHHHHHhhhhheeeeecCCcccceeehHHHHHhcC-CCcEEE
Confidence            000001258999987654433 34457788999999 898876

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.53  E-value=0.05  Score=40.06  Aligned_cols=97  Identities=11%  Similarity=0.006  Sum_probs=65.1

Q ss_pred             CCCCeEEEEcCCc--chhHHHHHh-cCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhh-ccCCCCceeEEEec
Q 024647           32 TNHELAWDVGTGS--GQAAASLSG-IFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQ-NVAAQSTVDLVTIA  107 (265)
Q Consensus        32 ~~~~~vlDvGcG~--G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~Dlv~~~  107 (265)
                      +++++||--|++.  |.++.++++ .+++|+++--|++-.+.+++......+...-    .+.+. .....+.+|+|+-.
T Consensus        30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~vi~~~~----~~~~~~~~~~~~gvD~vid~  105 (176)
T d1xa0a2          30 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLARED----VMAERIRPLDKQRWAAAVDP  105 (176)
T ss_dssp             GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC-------------CCSCCEEEEEEC
T ss_pred             CCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccceeeecch----hHHHHHHHhhccCcCEEEEc
Confidence            4567888888654  677777775 4679999999999899888754333333221    11111 12355689998865


Q ss_pred             cccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      -.      ...+....+.|+ |||+++.....
T Consensus       106 vg------g~~~~~~l~~l~-~~Griv~~G~~  130 (176)
T d1xa0a2         106 VG------GRTLATVLSRMR-YGGAVAVSGLT  130 (176)
T ss_dssp             ST------TTTHHHHHHTEE-EEEEEEECSCC
T ss_pred             CC------chhHHHHHHHhC-CCceEEEeecc
Confidence            32      357899999999 99999986654

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.01  E-value=0.08  Score=36.69  Aligned_cols=94  Identities=15%  Similarity=0.038  Sum_probs=54.3

Q ss_pred             CeEEEEcCCc-ch-hHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecccccc
Q 024647           35 ELAWDVGTGS-GQ-AAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHW  112 (265)
Q Consensus        35 ~~vlDvGcG~-G~-~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~  112 (265)
                      ++|+=+|+|. |. ++..|.+.+.+|+.+|.+++.++.+....+.....+++... .-++..  .-+..|.+++...-. 
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~-~~l~~~--~i~~a~~vv~~t~~d-   76 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKI-KTLEDA--GIEDADMYIAVTGKE-   76 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSH-HHHHHT--TTTTCSEEEECCSCH-
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccch-hhhhhc--ChhhhhhhcccCCcH-
Confidence            4677777754 32 22334456778999999999998876533677777665211 112223  234688888742211 


Q ss_pred             CChhHHHHHHHHHhcCCCcEEE
Q 024647          113 FDLPQFYNQVKWVLKKPNGVIA  134 (265)
Q Consensus       113 ~~~~~~l~~~~~~Lk~pgG~l~  134 (265)
                       +.........+.+. +.-+++
T Consensus        77 -~~N~~~~~~~k~~~-~~~iI~   96 (132)
T d1lssa_          77 -EVNLMSSLLAKSYG-INKTIA   96 (132)
T ss_dssp             -HHHHHHHHHHHHTT-CCCEEE
T ss_pred             -HHHHHHHHHHHHcC-CceEEE
Confidence             11224455566677 664443

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.58  E-value=0.033  Score=45.14  Aligned_cols=73  Identities=12%  Similarity=0.116  Sum_probs=50.0

Q ss_pred             CCeEEEEcCCcchhHHHHHhcCC--c-EEEEcCCHHHHHHHHc-CCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647           34 HELAWDVGTGSGQAAASLSGIFE--N-VIGTETSPKQIEFATK-LPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA  109 (265)
Q Consensus        34 ~~~vlDvGcG~G~~~~~l~~~~~--~-v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~  109 (265)
                      +.+|+|+-||.|.++..|...+-  + +.++|+++..++..+. +++......+++.+  +...+  +...+|+++....
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~~~~~~~~di~~~--~~~~~--~~~~~Dll~ggpP   77 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGI--TLEEF--DRLSFDMILMSPP   77 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGC--CHHHH--HHHCCSEEEECCC
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCCCCCcccCchhhC--CHhHc--CCCCccEEEeecc
Confidence            56899999999999999887764  3 6799999999987664 46666666443211  11112  2236899998774


Q ss_pred             c
Q 024647          110 M  110 (265)
Q Consensus       110 ~  110 (265)
                      +
T Consensus        78 C   78 (343)
T d1g55a_          78 C   78 (343)
T ss_dssp             -
T ss_pred             c
Confidence            4

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=92.83  E-value=0.12  Score=41.17  Aligned_cols=69  Identities=6%  Similarity=-0.058  Sum_probs=48.4

Q ss_pred             CeEEEEcCCcchhHHHHHhcCCc-EEEEcCCHHHHHHHHc-CCCceEEecCCccchhhhhhccC-CCCceeEEEeccccc
Q 024647           35 ELAWDVGTGSGQAAASLSGIFEN-VIGTETSPKQIEFATK-LPNIRYELTSPAMSIAELEQNVA-AQSTVDLVTIAQAMH  111 (265)
Q Consensus        35 ~~vlDvGcG~G~~~~~l~~~~~~-v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~~-~~~~~Dlv~~~~~~~  111 (265)
                      ++|||+=||.|.++..+.+.+.+ +.++|+++..++..+. .++ .....       |+.++.. .-..+|+++....+.
T Consensus         1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~~-~~~~~-------Di~~~~~~~~~~~dll~~g~PCq   72 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHSA-KLIKG-------DISKISSDEFPKCDGIIGGPPCQ   72 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCCS-EEEES-------CTTTSCGGGSCCCSEEEECCCCT
T ss_pred             CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCCC-CCccC-------ChhhCCHhHcccccEEeeccccc
Confidence            46999999999999999888776 5699999998886554 343 34453       3333321 123589999877443

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=92.37  E-value=0.25  Score=40.55  Aligned_cols=40  Identities=18%  Similarity=0.129  Sum_probs=31.3

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcC---------CcEEEEcCCHHHHHHHH
Q 024647           33 NHELAWDVGTGSGQAAASLSGIF---------ENVIGTETSPKQIEFAT   72 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~---------~~v~~vD~s~~~~~~a~   72 (265)
                      +..+|+|+|+|+|.++.-+.+..         -+++.+|+|+.+.+.-+
T Consensus        79 ~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~  127 (365)
T d1zkda1          79 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQ  127 (365)
T ss_dssp             SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHH
T ss_pred             ccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHH
Confidence            44579999999999998876532         13889999999877554

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=92.21  E-value=0.55  Score=33.73  Aligned_cols=94  Identities=13%  Similarity=0.129  Sum_probs=57.6

Q ss_pred             CeEEEEcCCcc--hhHHHHHhcCCcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCCCCceeEEE
Q 024647           35 ELAWDVGTGSG--QAAASLSGIFENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAAQSTVDLVT  105 (265)
Q Consensus        35 ~~vlDvGcG~G--~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~  105 (265)
                      +++--+|+|..  .++..|++.+.+|+.+|.++.-++..+..       +............ .+..+.   -...|+|+
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~---~~~aD~ii   77 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLT-SDIGLA---VKDADVIL   77 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEE-SCHHHH---HTTCSEEE
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhh-hhhHhH---hcCCCEEE
Confidence            46778999973  44455677888999999999988877641       1111221111100 122221   13589998


Q ss_pred             eccccccCChhHHHHHHHHHhcCCCcEEEE
Q 024647          106 IAQAMHWFDLPQFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus       106 ~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~  135 (265)
                      ..-  .......+++++...|+ ++..+++
T Consensus        78 i~v--~~~~~~~~~~~i~~~l~-~~~~iv~  104 (184)
T d1bg6a2          78 IVV--PAIHHASIAANIASYIS-EGQLIIL  104 (184)
T ss_dssp             ECS--CGGGHHHHHHHHGGGCC-TTCEEEE
T ss_pred             EEE--chhHHHHHHHHhhhccC-CCCEEEE
Confidence            753  22245678999999999 7776543

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.53  E-value=0.75  Score=33.48  Aligned_cols=94  Identities=15%  Similarity=0.100  Sum_probs=59.6

Q ss_pred             CeEEEEcC-C-cchhHHHHHhcC-Cc-EEEEcCCHHHHH-HHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647           35 ELAWDVGT-G-SGQAAASLSGIF-EN-VIGTETSPKQIE-FATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA  109 (265)
Q Consensus        35 ~~vlDvGc-G-~G~~~~~l~~~~-~~-v~~vD~s~~~~~-~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~  109 (265)
                      ++||-.|+ | .|..+.++++.. ++ |+++..+++... .++.......+...-+.....+....  +..+|+|+-.-.
T Consensus        32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~--~~GvDvv~D~vG  109 (187)
T d1vj1a2          32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREAC--PGGVDVYFDNVG  109 (187)
T ss_dssp             CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHC--TTCEEEEEESSC
T ss_pred             CEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHh--ccCceEEEecCC
Confidence            67888773 4 599999999864 44 777777766555 44444333334433222223333332  356999986532


Q ss_pred             cccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647          110 MHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       110 ~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                            ...++...+.|+ ++|+++...
T Consensus       110 ------g~~~~~~~~~l~-~~G~iv~~G  130 (187)
T d1vj1a2         110 ------GDISNTVISQMN-ENSHIILCG  130 (187)
T ss_dssp             ------HHHHHHHHTTEE-EEEEEEEC-
T ss_pred             ------chhHHHHhhhcc-ccccEEEec
Confidence                  457899999999 999998754

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=91.23  E-value=0.8  Score=33.37  Aligned_cols=99  Identities=12%  Similarity=0.054  Sum_probs=54.3

Q ss_pred             CCCCeEEEEcCC---cchhHHHHHhc-CCcEEEE----cCCHHHHHHHHcCCCceEEecCC---ccchhhhhhc-cCCCC
Q 024647           32 TNHELAWDVGTG---SGQAAASLSGI-FENVIGT----ETSPKQIEFATKLPNIRYELTSP---AMSIAELEQN-VAAQS   99 (265)
Q Consensus        32 ~~~~~vlDvGcG---~G~~~~~l~~~-~~~v~~v----D~s~~~~~~a~~~~~~~~~~~~~---~~~~~d~~~~-~~~~~   99 (265)
                      .++..||=+.+|   .|..+..+++. +++|+++    +-+++..+.++++..-..+..+.   .-....+.+. ....+
T Consensus        27 ~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~~g~  106 (189)
T d1gu7a2          27 TPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGG  106 (189)
T ss_dssp             CTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTC
T ss_pred             CCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHhhccC
Confidence            456677777333   35677777764 6788776    33344455555543333332110   0000001111 01235


Q ss_pred             ceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647          100 TVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       100 ~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      .+|+|+-.     +. ...+....+.|+ |+|+++...
T Consensus       107 ~vdvv~D~-----vg-~~~~~~~~~~l~-~~G~~v~~G  137 (189)
T d1gu7a2         107 EAKLALNC-----VG-GKSSTGIARKLN-NNGLMLTYG  137 (189)
T ss_dssp             CEEEEEES-----SC-HHHHHHHHHTSC-TTCEEEECC
T ss_pred             CceEEEEC-----CC-cchhhhhhhhhc-CCcEEEEEC
Confidence            68998854     22 356788899999 999998754

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=91.14  E-value=0.28  Score=35.41  Aligned_cols=94  Identities=10%  Similarity=0.041  Sum_probs=62.8

Q ss_pred             CCCeEEEEcCC--cchhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhh--hh-ccCCCCceeEEEe
Q 024647           33 NHELAWDVGTG--SGQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAEL--EQ-NVAAQSTVDLVTI  106 (265)
Q Consensus        33 ~~~~vlDvGcG--~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~--~~-~~~~~~~~Dlv~~  106 (265)
                      ++..||--|++  -|.++.+|++. +++|+++.-+++-.+.++++.....+..      .+.  +. .....+.+|+|+-
T Consensus        23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad~vi~~------~~~~~~~~~~~~~~gvd~vid   96 (167)
T d1tt7a2          23 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISR------EDVYDGTLKALSKQQWQGAVD   96 (167)
T ss_dssp             GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEEEH------HHHCSSCCCSSCCCCEEEEEE
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhcccceEec------cchhchhhhcccCCCceEEEe
Confidence            45567776643  37777888875 7899999999888888877432222221      111  11 1124467999886


Q ss_pred             ccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647          107 AQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT  139 (265)
Q Consensus       107 ~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~  139 (265)
                      .-.      .+.+.+..+.|+ |+|+++++...
T Consensus        97 ~vg------g~~~~~~~~~l~-~~G~iv~~G~~  122 (167)
T d1tt7a2          97 PVG------GKQLASLLSKIQ-YGGSVAVSGLT  122 (167)
T ss_dssp             SCC------THHHHHHHTTEE-EEEEEEECCCS
T ss_pred             cCc------HHHHHHHHHHhc-cCceEEEeecc
Confidence            421      468899999999 99999986554

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=90.33  E-value=0.25  Score=33.92  Aligned_cols=91  Identities=11%  Similarity=0.051  Sum_probs=49.6

Q ss_pred             EEEEcCCc-ch-hHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccccccCC
Q 024647           37 AWDVGTGS-GQ-AAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFD  114 (265)
Q Consensus        37 vlDvGcG~-G~-~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~  114 (265)
                      ++=+|+|. |. ++..|.+.+.+|+.+|.+++.++.++.. ......+++... ..++....  ...|.+++...   -+
T Consensus         3 ~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~-~~~~~~gd~~~~-~~l~~a~i--~~a~~vi~~~~---~~   75 (134)
T d2hmva1           3 FAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASY-ATHAVIANATEE-NELLSLGI--RNFEYVIVAIG---AN   75 (134)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTT-CSEEEECCTTCT-THHHHHTG--GGCSEEEECCC---SC
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHh-CCcceeeecccc-hhhhccCC--ccccEEEEEcC---ch
Confidence            45566654 32 2333445678899999999999998763 345555554211 12233322  35787776522   11


Q ss_pred             -hhHHHHHHHHHhcCCCcEEEE
Q 024647          115 -LPQFYNQVKWVLKKPNGVIAT  135 (265)
Q Consensus       115 -~~~~l~~~~~~Lk~pgG~l~~  135 (265)
                       ....+-.+.+-+. |...++.
T Consensus        76 ~~~~~~~~~~~~~~-~~~~iia   96 (134)
T d2hmva1          76 IQASTLTTLLLKEL-DIPNIWV   96 (134)
T ss_dssp             HHHHHHHHHHHHHT-TCSEEEE
T ss_pred             HHhHHHHHHHHHHc-CCCcEEe
Confidence             1223334444455 5666654

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=90.21  E-value=0.19  Score=32.85  Aligned_cols=73  Identities=12%  Similarity=0.090  Sum_probs=44.8

Q ss_pred             CCCeEEEEcC-Ccc--hhHHHHHhcCCcEEEEcCCH-HHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           33 NHELAWDVGT-GSG--QAAASLSGIFENVIGTETSP-KQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        33 ~~~~vlDvGc-G~G--~~~~~l~~~~~~v~~vD~s~-~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      ..+++.=+|. |+|  .+++.|.+++.+|+|.|... ...+...+ .++.+.....      .+.+    ...|+|+.+.
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~-~Gi~v~~g~~------~~~i----~~~d~vV~S~   75 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQ-AGAKIYIGHA------EEHI----EGASVVVVSS   75 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHH-TTCEEEESCC------GGGG----TTCSEEEECT
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHH-CCCeEEECCc------cccC----CCCCEEEECC
Confidence            3456777764 455  44566778999999999853 33344443 4666665332      1222    2479999998


Q ss_pred             ccccCChh
Q 024647          109 AMHWFDLP  116 (265)
Q Consensus       109 ~~~~~~~~  116 (265)
                      ++..-+++
T Consensus        76 AI~~~npe   83 (96)
T d1p3da1          76 AIKDDNPE   83 (96)
T ss_dssp             TSCTTCHH
T ss_pred             CcCCCCHH
Confidence            87654443

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.84  E-value=0.83  Score=34.84  Aligned_cols=78  Identities=15%  Similarity=0.177  Sum_probs=54.1

Q ss_pred             CCCeEEEEcCCcc---hhHHHHHhcCCcEEEEcCCHHHHHHHH-cCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           33 NHELAWDVGTGSG---QAAASLSGIFENVIGTETSPKQIEFAT-KLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        33 ~~~~vlDvGcG~G---~~~~~l~~~~~~v~~vD~s~~~~~~a~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      .++++|--|++.|   ..++.|++.+++|+.+|.+++-++... +..++.....++... .+++..-..-++.|+++.+-
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d~-~~v~~~~~~~g~iDilVnnA   84 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDW-EATERALGSVGPVDLLVNNA   84 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCH-HHHHHHHTTCCCCCEEEECC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCH-HHHHHHHHHhCCceEEEecc
Confidence            5678899998877   455667778899999999999887654 456777777666322 22333323346899998766


Q ss_pred             ccc
Q 024647          109 AMH  111 (265)
Q Consensus       109 ~~~  111 (265)
                      ...
T Consensus        85 g~~   87 (244)
T d1pr9a_          85 AVA   87 (244)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            544

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=89.58  E-value=0.35  Score=38.55  Aligned_cols=69  Identities=13%  Similarity=0.001  Sum_probs=49.2

Q ss_pred             CCCeEEEEcCCcchhHHHHHhcCCc-EEEEcCCHHHHHHHHc-CCCceEEecCCccchhhhhhccC-CCCceeEEEeccc
Q 024647           33 NHELAWDVGTGSGQAAASLSGIFEN-VIGTETSPKQIEFATK-LPNIRYELTSPAMSIAELEQNVA-AQSTVDLVTIAQA  109 (265)
Q Consensus        33 ~~~~vlDvGcG~G~~~~~l~~~~~~-v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~~-~~~~~Dlv~~~~~  109 (265)
                      .+.+|||+=||-|.++..|.+.+.+ +.++|+++..++..+. .++..  .       +|+.++.. .-..+|+++....
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~~~--~-------~Di~~~~~~~~~~~Dll~ggpP   80 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKP--E-------GDITQVNEKTIPDHDILCAGFP   80 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCCC--B-------SCGGGSCGGGSCCCSEEEEECC
T ss_pred             CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCCCC--c-------CchhcCchhhcceeeeeecccc
Confidence            4588999999999999999988876 5679999999987664 23321  2       34444321 1235899998764


Q ss_pred             c
Q 024647          110 M  110 (265)
Q Consensus       110 ~  110 (265)
                      +
T Consensus        81 C   81 (327)
T d2c7pa1          81 C   81 (327)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=89.29  E-value=0.3  Score=31.31  Aligned_cols=70  Identities=19%  Similarity=0.098  Sum_probs=42.4

Q ss_pred             eEEEEc-CCcc--hhHHHHHhcCCcEEEEcCCH-HHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccccc
Q 024647           36 LAWDVG-TGSG--QAAASLSGIFENVIGTETSP-KQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMH  111 (265)
Q Consensus        36 ~vlDvG-cG~G--~~~~~l~~~~~~v~~vD~s~-~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~  111 (265)
                      +|.=+| ||+|  .+++.|.+++.+|.|.|..+ .+.+..+. .++.+..+.      +.+.+    ...|+|+.+.++.
T Consensus         3 ~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~-~Gi~i~~gh------~~~~i----~~~d~vV~SsAI~   71 (89)
T d1j6ua1           3 KIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRK-LGIPIFVPH------SADNW----YDPDLVIKTPAVR   71 (89)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHH-TTCCEESSC------CTTSC----CCCSEEEECTTCC
T ss_pred             EEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHH-CCCeEEeee------ccccc----CCCCEEEEecCcC
Confidence            333344 3455  45566778899999999987 34444444 456665431      12222    3579999998876


Q ss_pred             cCChh
Q 024647          112 WFDLP  116 (265)
Q Consensus       112 ~~~~~  116 (265)
                      .-+++
T Consensus        72 ~~npe   76 (89)
T d1j6ua1          72 DDNPE   76 (89)
T ss_dssp             TTCHH
T ss_pred             CCCHH
Confidence            44443

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=89.15  E-value=0.43  Score=34.72  Aligned_cols=94  Identities=13%  Similarity=0.016  Sum_probs=59.6

Q ss_pred             CCCeEEEEcCC--cchhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647           33 NHELAWDVGTG--SGQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA  109 (265)
Q Consensus        33 ~~~~vlDvGcG--~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~  109 (265)
                      ++..||-.|+.  .|..+.++++. +++|+++.-+++..+.++.+.....+...-    .+ ..-.+....+|.|+-.  
T Consensus        31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGad~vi~~~~----~~-~~~~l~~~~~~~vvD~--  103 (177)
T d1o89a2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGASRVLPRDE----FA-ESRPLEKQVWAGAIDT--  103 (177)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTEEEEEEGGG----SS-SCCSSCCCCEEEEEES--
T ss_pred             CCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhcccccccccc----HH-HHHHHHhhcCCeeEEE--
Confidence            33466665532  46777777765 679999999999988888643223332110    11 1112344567877532  


Q ss_pred             cccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647          110 MHWFDLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       110 ~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                         + -...+.+..+.|+ ++|+++....
T Consensus       104 ---V-gg~~~~~~l~~l~-~~Griv~~G~  127 (177)
T d1o89a2         104 ---V-GDKVLAKVLAQMN-YGGCVAACGL  127 (177)
T ss_dssp             ---S-CHHHHHHHHHTEE-EEEEEEECCC
T ss_pred             ---c-chHHHHHHHHHhc-cccceEeecc
Confidence               1 1357899999999 9999998654

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=86.86  E-value=2.1  Score=28.75  Aligned_cols=88  Identities=8%  Similarity=-0.031  Sum_probs=56.5

Q ss_pred             CCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccccccCChh--H
Q 024647           42 TGSGQAAASLSGIF--ENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLP--Q  117 (265)
Q Consensus        42 cG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~--~  117 (265)
                      ||.|..+..+++..  .+++.+|.++..++.++. .++.+..+++... ..++...  -+..+.+++...    +..  .
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~-~~~~~i~Gd~~~~-~~L~~a~--i~~A~~vi~~~~----~d~~n~   77 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLR-SGANFVHGDPTRV-SDLEKAN--VRGARAVIVNLE----SDSETI   77 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHH-TTCEEEESCTTSH-HHHHHTT--CTTCSEEEECCS----SHHHHH
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHh-cCccccccccCCH-HHHHHhh--hhcCcEEEEecc----chhhhH
Confidence            45567888888754  369999999999988765 5788888776321 2233332  345777776421    222  3


Q ss_pred             HHHHHHHHhcCCCcEEEEEec
Q 024647          118 FYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus       118 ~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      .+-...+.+. |...++....
T Consensus        78 ~~~~~~r~~~-~~~~iia~~~   97 (129)
T d2fy8a1          78 HCILGIRKID-ESVRIIAEAE   97 (129)
T ss_dssp             HHHHHHHHHC-SSSCEEEECS
T ss_pred             HHHHHHHHHC-CCceEEEEEc
Confidence            4555667788 8877766443

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.74  E-value=1.5  Score=33.23  Aligned_cols=77  Identities=17%  Similarity=0.168  Sum_probs=51.4

Q ss_pred             CCCeEEEEcCCcc---hhHHHHHhcCCcEEEEcCCHHHHHHHH-cCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647           33 NHELAWDVGTGSG---QAAASLSGIFENVIGTETSPKQIEFAT-KLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ  108 (265)
Q Consensus        33 ~~~~vlDvGcG~G---~~~~~l~~~~~~v~~vD~s~~~~~~a~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~  108 (265)
                      +++++|--|++.|   ..+..|++.+++|+.+|.+++-++... +..++.....++... .+++..-..-++.|+++.+-
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~~-~~v~~~~~~~g~iDilVnnA   82 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDW-DATEKALGGIGPVDLLVNNA   82 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCH-HHHHHHHTTCCCCSEEEECC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCH-HHHHHHHHHcCCCeEEEECC
Confidence            4577888888776   345556778899999999988776553 466777777666322 22333322336899999765


Q ss_pred             cc
Q 024647          109 AM  110 (265)
Q Consensus       109 ~~  110 (265)
                      ..
T Consensus        83 g~   84 (242)
T d1cyda_          83 AL   84 (242)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=86.13  E-value=2  Score=32.79  Aligned_cols=104  Identities=14%  Similarity=0.047  Sum_probs=61.0

Q ss_pred             CCCeEEEEcCCcc---hhHHHHHhcCCcEEEEcCCHHHHHHHHc--CCCceEEecCCccchhhhhhc----cCCCCceeE
Q 024647           33 NHELAWDVGTGSG---QAAASLSGIFENVIGTETSPKQIEFATK--LPNIRYELTSPAMSIAELEQN----VAAQSTVDL  103 (265)
Q Consensus        33 ~~~~vlDvGcG~G---~~~~~l~~~~~~v~~vD~s~~~~~~a~~--~~~~~~~~~~~~~~~~d~~~~----~~~~~~~Dl  103 (265)
                      +++++|--|++.|   ..+..|++.+++|+.+|.+++.++...+  ..+..+...++... .+.+.+    ...-+..|+
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~-~~~~~~~~~~~~~~g~iDi   83 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSE-ADWTLVMAAVQRRLGTLNV   83 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCH-HHHHHHHHHHHHHHCSCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCeEEEEeecCCH-HHHHHHHHHHHHHhCCCCe
Confidence            4567787787766   4455567788999999999988876543  23455555444221 122211    112257899


Q ss_pred             EEeccccccC-C-----hh--------------HHHHHHHHHhcCCCcEEEEEe
Q 024647          104 VTIAQAMHWF-D-----LP--------------QFYNQVKWVLKKPNGVIATWC  137 (265)
Q Consensus       104 v~~~~~~~~~-~-----~~--------------~~l~~~~~~Lk~pgG~l~~~~  137 (265)
                      ++.+-..... +     .+              .+.+.+...|++.+|.++...
T Consensus        84 lVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~is  137 (253)
T d1hxha_          84 LVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMA  137 (253)
T ss_dssp             EEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             EEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceeccc
Confidence            9887654322 1     11              245566666753578877543

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.33  E-value=2.2  Score=32.31  Aligned_cols=80  Identities=10%  Similarity=0.096  Sum_probs=52.2

Q ss_pred             CCCeEEEEcCCcc---hhHHHHHhcCCcEEEEcCCHHHHHHHHc-----CCCceEEecCCccchhhhhh----ccCCCCc
Q 024647           33 NHELAWDVGTGSG---QAAASLSGIFENVIGTETSPKQIEFATK-----LPNIRYELTSPAMSIAELEQ----NVAAQST  100 (265)
Q Consensus        33 ~~~~vlDvGcG~G---~~~~~l~~~~~~v~~vD~s~~~~~~a~~-----~~~~~~~~~~~~~~~~d~~~----~~~~~~~  100 (265)
                      .++++|--|++.|   .++..|++.+.+|+.+|.+++-++...+     ..++.....+..... +++.    .....+.
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~-~v~~~~~~i~~~~g~   84 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNRE-DIYSSAKKVKAEIGD   84 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHH-HHHHHHHHHHHHTCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHH-HHHHHHHHHHHHcCC
Confidence            4567788888887   4566677889999999999988775532     246677776653221 1111    1113457


Q ss_pred             eeEEEeccccccC
Q 024647          101 VDLVTIAQAMHWF  113 (265)
Q Consensus       101 ~Dlv~~~~~~~~~  113 (265)
                      .|+++.+..+.+.
T Consensus        85 idilinnag~~~~   97 (244)
T d1yb1a_          85 VSILVNNAGVVYT   97 (244)
T ss_dssp             CSEEEECCCCCCC
T ss_pred             CceeEeecccccc
Confidence            9999987765543

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.81  E-value=2.5  Score=32.20  Aligned_cols=77  Identities=17%  Similarity=0.106  Sum_probs=47.6

Q ss_pred             CCCeEEEEcCCcc---hhHHHHHhcCCcEEEEcCCHHHHHHHHc-----C--CCceEEecCCccchhhhhh----ccCCC
Q 024647           33 NHELAWDVGTGSG---QAAASLSGIFENVIGTETSPKQIEFATK-----L--PNIRYELTSPAMSIAELEQ----NVAAQ   98 (265)
Q Consensus        33 ~~~~vlDvGcG~G---~~~~~l~~~~~~v~~vD~s~~~~~~a~~-----~--~~~~~~~~~~~~~~~d~~~----~~~~~   98 (265)
                      +++++|--|++.|   ..+..|++.+++|+.++.++..++.+.+     .  ..+.+...++... .+++.    ....-
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~-~~v~~~v~~~~~~~   87 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNE-EDILSMFSAIRSQH   87 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCH-HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCH-HHHHHHHHHHHHhc
Confidence            4578899998877   3445566788899999999988776432     1  2355556555321 22222    11123


Q ss_pred             CceeEEEecccc
Q 024647           99 STVDLVTIAQAM  110 (265)
Q Consensus        99 ~~~Dlv~~~~~~  110 (265)
                      +..|+++.+-..
T Consensus        88 g~iD~lVnnAg~   99 (257)
T d1xg5a_          88 SGVDICINNAGL   99 (257)
T ss_dssp             CCCSEEEECCCC
T ss_pred             CCCCEEEecccc
Confidence            578998876544

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.24  E-value=1.1  Score=34.04  Aligned_cols=78  Identities=14%  Similarity=0.183  Sum_probs=49.7

Q ss_pred             CCCeEEEEcCCcc---hhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647           33 NHELAWDVGTGSG---QAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA  109 (265)
Q Consensus        33 ~~~~vlDvGcG~G---~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~  109 (265)
                      +++++|--|++.|   ..++.|++++++|+++|.++.-++...+..++.....+.... ...+.....-+..|.++.+..
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~id~lVn~ag   83 (245)
T d2ag5a1           5 DGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYPGIQTRVLDVTKK-KQIDQFANEVERLDVLFNVAG   83 (245)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGGSTTEEEEECCTTCH-HHHHHHHHHCSCCSEEEECCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhccCCceeeeecccc-ccccccccccccceeEEeccc
Confidence            4566777787665   345566778899999999999888777666666666554321 122222222346888887654


Q ss_pred             cc
Q 024647          110 MH  111 (265)
Q Consensus       110 ~~  111 (265)
                      ..
T Consensus        84 ~~   85 (245)
T d2ag5a1          84 FV   85 (245)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=83.77  E-value=3.2  Score=32.50  Aligned_cols=120  Identities=12%  Similarity=0.065  Sum_probs=63.6

Q ss_pred             hhCCCCcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHc-------C--CCceEEec
Q 024647           14 ETRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATK-------L--PNIRYELT   82 (265)
Q Consensus        14 ~~rp~y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~-------~--~~~~~~~~   82 (265)
                      ..|..|-++.+.....  ....-|+.+|||-=.-...+. ..+  +++=||. |.+++.-++       .  .+......
T Consensus        72 ~~Rtr~~D~~~~~~~~--~g~~qvV~LGaGlDTr~~Rl~-~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~  147 (297)
T d2uyoa1          72 AVRTNFFDTYFNNAVI--DGIRQFVILASGLDSRAYRLD-WPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPI  147 (297)
T ss_dssp             HHHHHHHHHHHHHHHH--TTCCEEEEETCTTCCHHHHSC-CCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHh--hCCCeEEEeCcccCChhhhcC-CCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecc
Confidence            3444444444433322  222346679998766555552 233  4666664 666653221       1  23344443


Q ss_pred             CCccc-hhhhhhccCCCCceeEEEeccccccCChh---HHHHHHHHHhcCCCcEEEEEec
Q 024647           83 SPAMS-IAELEQNVAAQSTVDLVTIAQAMHWFDLP---QFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        83 ~~~~~-~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~---~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      +.+.. ...+....+..+..-++++-.++++++.+   .+++.+.+... ||+.+++...
T Consensus       148 Dl~~~~~~~L~~~g~d~~~ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~-~GS~l~~d~~  206 (297)
T d2uyoa1         148 DLRQDWPPALRSAGFDPSARTAWLAEGLLMYLPATAQDGLFTEIGGLSA-VGSRIAVETS  206 (297)
T ss_dssp             CTTSCHHHHHHHTTCCTTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCC-TTCEEEEECC
T ss_pred             cccchHHHHHHhcCCCCCCCEEEEEccccccCCHHHHHHHHHHHHHhCC-CCCEEEEEec
Confidence            33210 01112222334455667777788888654   57888888888 8999887533

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=83.65  E-value=0.76  Score=37.94  Aligned_cols=42  Identities=26%  Similarity=0.377  Sum_probs=34.4

Q ss_pred             CCCCeEEEEcCCcchhHHHHHhc----CCcEEEEcCCHHHHHHHHc
Q 024647           32 TNHELAWDVGTGSGQAAASLSGI----FENVIGTETSPKQIEFATK   73 (265)
Q Consensus        32 ~~~~~vlDvGcG~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~   73 (265)
                      .+..+++||||-.|..+..++..    +.+|+++||++...+..++
T Consensus       211 ~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~Lkk  256 (395)
T d2py6a1         211 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQN  256 (395)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHH
T ss_pred             CCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHH
Confidence            35678999999999988877653    3579999999999887764

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=83.42  E-value=3.8  Score=28.24  Aligned_cols=96  Identities=13%  Similarity=0.037  Sum_probs=57.4

Q ss_pred             CeEEEEcCCc-ch-hHHHHHhcC-CcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccccc
Q 024647           35 ELAWDVGTGS-GQ-AAASLSGIF-ENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMH  111 (265)
Q Consensus        35 ~~vlDvGcG~-G~-~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~  111 (265)
                      ++|.=||||. |. +...|.+.+ .++...|.+++.++...+..++....        +.+..    ...|+|+.+    
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~--------~~~~v----~~~Div~la----   64 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSA--------TLPEL----HSDDVLILA----   64 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEES--------SCCCC----CTTSEEEEC----
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhccccccc--------ccccc----cccceEEEe----
Confidence            3567789987 33 344466665 68999999999888765433444332        22222    246998865    


Q ss_pred             cCChhHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHh
Q 024647          112 WFDLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAV  150 (265)
Q Consensus       112 ~~~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~  150 (265)
                       +.| ..+.++.+-++ +.+.+++....... ...+.+.
T Consensus        65 -vkP-~~~~~v~~~l~-~~~~~viS~~ag~~-~~~l~~~   99 (152)
T d1yqga2          65 -VKP-QDMEAACKNIR-TNGALVLSVAAGLS-VGTLSRY   99 (152)
T ss_dssp             -SCH-HHHHHHHTTCC-CTTCEEEECCTTCC-HHHHHHH
T ss_pred             -cCH-HHHHHhHHHHh-hcccEEeecccCCC-HHHHHHH
Confidence             333 45566666677 67777775554333 2444443

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=83.20  E-value=0.47  Score=34.78  Aligned_cols=40  Identities=18%  Similarity=0.055  Sum_probs=31.5

Q ss_pred             CCCeEEEEcCCcc---hhHHHHHhcCCcEEEEcCCHHHHHHHH
Q 024647           33 NHELAWDVGTGSG---QAAASLSGIFENVIGTETSPKQIEFAT   72 (265)
Q Consensus        33 ~~~~vlDvGcG~G---~~~~~l~~~~~~v~~vD~s~~~~~~a~   72 (265)
                      +++++|-.|++.|   .+++.|++.+++|+.++.+++.++...
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~   64 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAA   64 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHH
Confidence            6788999997765   455567788899999999998877654

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=81.74  E-value=6.6  Score=29.53  Aligned_cols=77  Identities=16%  Similarity=0.180  Sum_probs=47.2

Q ss_pred             CCCeEEEEcCCcc---hhHHHHHhcCCcEEEEcCCHHHHHHHHc-----CCCceEEecCCccchhhhhh----ccCCCCc
Q 024647           33 NHELAWDVGTGSG---QAAASLSGIFENVIGTETSPKQIEFATK-----LPNIRYELTSPAMSIAELEQ----NVAAQST  100 (265)
Q Consensus        33 ~~~~vlDvGcG~G---~~~~~l~~~~~~v~~vD~s~~~~~~a~~-----~~~~~~~~~~~~~~~~d~~~----~~~~~~~  100 (265)
                      +++++|--|++.|   ..+..|++.+++|+.+|.+++.++.+.+     ..++.....++... .+++.    ....-+.
T Consensus         9 enKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~-~~v~~~~~~~~~~~g~   87 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKK-EEISEVINKILTEHKN   87 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCH-HHHHHHHHHHHHHCSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCH-HHHHHHHHHHHHhcCC
Confidence            5567788887766   3344556677899999999988775542     13566666655321 11111    1112357


Q ss_pred             eeEEEecccc
Q 024647          101 VDLVTIAQAM  110 (265)
Q Consensus       101 ~Dlv~~~~~~  110 (265)
                      .|+++.+...
T Consensus        88 iDilvnnag~   97 (251)
T d2c07a1          88 VDILVNNAGI   97 (251)
T ss_dssp             CCEEEECCCC
T ss_pred             ceeeeecccc
Confidence            9988876644

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=81.68  E-value=0.95  Score=33.06  Aligned_cols=39  Identities=15%  Similarity=0.179  Sum_probs=28.3

Q ss_pred             CeEEEEcCCc-chhHHHHHhcCCcEEEEcCCHHHHHHHHc
Q 024647           35 ELAWDVGTGS-GQAAASLSGIFENVIGTETSPKQIEFATK   73 (265)
Q Consensus        35 ~~vlDvGcG~-G~~~~~l~~~~~~v~~vD~s~~~~~~a~~   73 (265)
                      ++|--+|.|- |..+..++..+.+|+|+|+++.-++..+.
T Consensus         1 MkI~ViGlG~vGl~~a~~~a~g~~V~g~Din~~~v~~l~~   40 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLSLQNEVTIVDILPSKVDKINN   40 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTSEEEEECSCHHHHHHHHT
T ss_pred             CEEEEECCChhHHHHHHHHHCCCcEEEEECCHHHHHHHhh
Confidence            4567788775 54444444567789999999999988774

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=81.28  E-value=0.45  Score=36.74  Aligned_cols=42  Identities=21%  Similarity=0.410  Sum_probs=31.3

Q ss_pred             CCCCceeEEEeccccc-----c------C-ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647           96 AAQSTVDLVTIAQAMH-----W------F-DLPQFYNQVKWVLKKPNGVIATWCY  138 (265)
Q Consensus        96 ~~~~~~Dlv~~~~~~~-----~------~-~~~~~l~~~~~~Lk~pgG~l~~~~~  138 (265)
                      ++++++|+|+..-...     |      . .....+.++.|+|+ |+|.+++...
T Consensus        19 l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk-~~G~~~~~~~   72 (279)
T d1eg2a_          19 LPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLS-PTGSIAIFGG   72 (279)
T ss_dssp             SCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEE-EEEEEEEEEC
T ss_pred             CcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhC-CCccEEEecC
Confidence            5789999999976432     1      1 12467889999999 9999988554

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.96  E-value=1  Score=33.09  Aligned_cols=39  Identities=13%  Similarity=0.052  Sum_probs=30.5

Q ss_pred             CeEEEEcCCcc--hhHHHHHhcCCcEEEEcCCHHHHHHHHc
Q 024647           35 ELAWDVGTGSG--QAAASLSGIFENVIGTETSPKQIEFATK   73 (265)
Q Consensus        35 ~~vlDvGcG~G--~~~~~l~~~~~~v~~vD~s~~~~~~a~~   73 (265)
                      .+|--||+|+-  .++..++..+.+|+.+|++++.++.+.+
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~   45 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKK   45 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHh
Confidence            46888999972  4445567788899999999999887754

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.03  E-value=1.4  Score=32.46  Aligned_cols=39  Identities=28%  Similarity=0.324  Sum_probs=30.2

Q ss_pred             CeEEEEcCCc-c-hhHHHHHhcCCcEEEEcCCHHHHHHHHc
Q 024647           35 ELAWDVGTGS-G-QAAASLSGIFENVIGTETSPKQIEFATK   73 (265)
Q Consensus        35 ~~vlDvGcG~-G-~~~~~l~~~~~~v~~vD~s~~~~~~a~~   73 (265)
                      ++|--+|+|. | .++..+++.+.+|+|+|+++.-++..+.
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~   41 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQ   41 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHT
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcc
Confidence            4577788886 4 3444567788999999999999988764