Citrus Sinensis ID: 024649

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-----
Protein Sequence
MEYRKIKDEDNDGGGSSSGDLESLRGKPISVTNVASKSSELANWKRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEEEEccccccccccccccccccccccEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEHHHHHHHHHHHHHHHHHHHHHHcHHHHHcc
Coil and Loop (DISEMBL)
meyrkikdedndgggsssgdleslrgkpisvtnvasksselanwkRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNhegvtddnrlsttldevivyPIPAVLYLVKNLLQYYIFAyvdapgyqilknlNIISTGVLYRIILKKKLSEIQWAAFILLCCGcttaqlnsnsdrvlqtPLQGWIMAIVMALLSGFAGVYTEAIMkkrpsrninvqNFWLYVFGMAFNAVAIVIQDFDAVMNK
Flexible Loop (DISEMBL)
meyrkikdedndgggsssgdleslrgkpisvtnvasksselanwkrkSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHegvtddnrlsttlDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNK
Low Complexity Region (SEG)
MEYRKIKdedndgggsssgdleslRGKPISVTNVASKSSELANWKRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNK
Disordered region (IsUnstruct)
****************************************LANWKRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAV***
Disordered Region (DISOPRED)
***********************************************SVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVM**
Disordered Region (DISEMBL)
*********************ESLRGKPISVTNVASKSSELANWKRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNK
Disordered Region (DISPRO)
****************************************LANWKRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAV***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEYRKIKDEDNDGGGSSSGDLESLRGKPISVTNVASKSSELANWKRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	265	2.2.26 [Sep-21-2011]
F4JN00	352	CMP-sialic acid transport	yes	no	0.988	0.744	0.819	1e-125
Q8LGE9	340	CMP-sialic acid transport	no	no	0.8	0.623	0.382	3e-33
A0JMG9	314	Probable UDP-sugar transp	yes	no	0.701	0.592	0.316	2e-18
Q9C5H6	405	CMP-sialic acid transport	no	no	0.754	0.493	0.277	1e-17
Q8GY97	406	CMP-sialic acid transport	no	no	0.754	0.492	0.287	2e-17
Q6DCG9	413	Probable UDP-sugar transp	N/A	no	0.754	0.484	0.297	1e-16
A4IHW3	321	Probable UDP-sugar transp	yes	no	0.698	0.576	0.333	2e-16
Q90X48	440	Probable UDP-sugar transp	no	no	0.8	0.481	0.244	3e-15
A6QPI1	425	Probable UDP-sugar transp	yes	no	0.750	0.468	0.275	8e-15
Q93890	368	UDP-galactose/UDP-N-acety	yes	no	0.886	0.638	0.288	2e-14

>sp|F4JN00|CSTR4_ARATH CMP-sialic acid transporter 4 OS=Arabidopsis thaliana GN=At4g35335 PE=2 SV=1

 Score =  448 bits (1153), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 223/272 (81%), Positives = 235/272 (86%), Gaps = 10/272 (3%)

Query: 1   MEYRKIKDEDNDGGGSSSGDLESLRGKP-------ISVTNVASKSSELANWKRKSVVTLA 53
           MEYRKIKDED+    S   D+ES++GK        I++  +   SSE  NWKRK VVT A
Sbjct: 1   MEYRKIKDEDDHDVAS---DIESVKGKSHTVASSNIAMATLGVGSSERINWKRKGVVTCA 57

Query: 54  LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLS 113
           LT+LTSSQAILIVWSKRAGKYEYSVTTANFLV TLKCALSL AL RIW +EGVTDDNRLS
Sbjct: 58  LTILTSSQAILIVWSKRAGKYEYSVTTANFLVGTLKCALSLLALTRIWKNEGVTDDNRLS 117

Query: 114 TTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSE 173
           TT DEV V+PIPA LYL KNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILK+KLSE
Sbjct: 118 TTFDEVKVFPIPAALYLFKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKRKLSE 177

Query: 174 IQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSR 233
           IQWA FILLCCGCTTAQLNSNSDRVLQT L GW MAIVMALLSGFAGVYTEAI+KKRPSR
Sbjct: 178 IQWAGFILLCCGCTTAQLNSNSDRVLQTSLPGWTMAIVMALLSGFAGVYTEAIIKKRPSR 237

Query: 234 NINVQNFWLYVFGMAFNAVAIVIQDFDAVMNK 265
           NINVQNFWLYVFGMAFNAVAIVIQDFDAV NK
Sbjct: 238 NINVQNFWLYVFGMAFNAVAIVIQDFDAVANK 269

Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi (By similarity). Essential protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8LGE9|CSTR1_ARATH CMP-sialic acid transporter 1 OS=Arabidopsis thaliana GN=At5g41760 PE=2 SV=1

 Score =  142 bits (357), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 85/222 (38%), Positives = 124/222 (55%), Gaps = 10/222 (4%)

Query: 50  VTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDD 109
           V + LT+LTSSQ IL   S+  G Y+Y   T  FL E  K  +S   L   W     +  
Sbjct: 9   VAVLLTILTSSQGILTTLSQSDGGYKYDYATVPFLAEVFKLIISGLFL---WREMRTSSS 65

Query: 110 NRLSTTLD--EVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIIL 167
                T D   V ++ IP+++YL+ N +Q+    YVD   YQI+ NL I++TG+L+R+ L
Sbjct: 66  TTSRITTDWKSVRLFVIPSLIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFRLFL 125

Query: 168 KKKLSEIQWAAFILLCCGCTTAQL----NSNSDRVLQTPLQGWIMAIVMALLSGFAGVYT 223
           K+KLS++QW A  LL  G TT+Q+     ++ D +   P+QG+++ I+ A LS  AG+YT
Sbjct: 126 KRKLSKLQWMAIGLLAVGTTTSQVKGCGEASCDSLFTAPIQGYLLGILSAGLSALAGIYT 185

Query: 224 EAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNK 265
           E +M KR +  +  QN  LY FG  FN   ++  DF     K
Sbjct: 186 EFLM-KRNNDTLYWQNLQLYTFGSLFNVARLIADDFRHGFEK 226

Essential protein. Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi.

Arabidopsis thaliana (taxid: 3702)

>sp|A0JMG9|S35A4_DANRE Probable UDP-sugar transporter protein SLC35A4 OS=Danio rerio GN=slc35a4 PE=2 SV=1

 Score = 93.2 bits (230), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/196 (31%), Positives = 96/196 (48%), Gaps = 10/196 (5%)

Query: 60  SQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEV 119
           S A L+   K   +  +S ++   L+ET K  +S A+L       G     R+S ++   
Sbjct: 34  SHAPLLSLCKTQAQIPFSASSCVLLIETSKLFISFASLLA----SGSVSTLRISISMTTA 89

Query: 120 IVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAF 179
             Y +PAVLY   N L  ++ AY+D   +Q+L NL I ST +LY   L K+L   QW A 
Sbjct: 90  SPYAVPAVLYAFNNHLVVFMQAYMDPSSFQVLSNLKIASTALLYTSCLGKRLHRRQWFAM 149

Query: 180 ILLCCG-----CTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRN 234
            LL        C +  L    +  +     G ++ +V   +SG A VYTE ++K +    
Sbjct: 150 GLLVSAGVSHSCFSYDLEGKRETAVYITSWGLLLVLVYCFVSGLAAVYTERVLKSQ-RLP 208

Query: 235 INVQNFWLYVFGMAFN 250
           +++QN +LY FG+  N
Sbjct: 209 LSMQNLFLYTFGVVVN 224

Danio rerio (taxid: 7955)

>sp|Q9C5H6|CSTR3_ARATH CMP-sialic acid transporter 3 OS=Arabidopsis thaliana GN=UTR6 PE=2 SV=1

 Score = 90.5 bits (223), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 105/209 (50%), Gaps = 9/209 (4%)

Query: 56  VLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLS-T 114
           +L   Q +L+  SK  GK+ +S  + NFL E  K   ++  L     H+ V +   LS +
Sbjct: 51  MLVGLQPVLVYMSKVDGKFNFSPISVNFLTEIAKVIFAIVMLLIQARHQKVGEKPLLSVS 110

Query: 115 TLDEV----IVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKK 170
           T  +     ++  +PA+LY + N L++ +  Y +    ++L NL ++   VL ++++K++
Sbjct: 111 TFVQAARNNVLLAVPALLYAINNYLKFTMQLYFNPATVKMLSNLKVLVIAVLLKMVMKRR 170

Query: 171 LSEIQWAAFILLCCGCTTAQLNS--NSDRVLQTPLQ--GWIMAIVMALLSGFAGVYTEAI 226
            S IQW A  LL  G +  QL S       +  PL    ++  ++   +   A V+ E  
Sbjct: 171 FSIIQWEALALLLIGISVNQLRSLPEGATAIGIPLATGAYVCTVIFVTVPSMASVFNEYA 230

Query: 227 MKKRPSRNINVQNFWLYVFGMAFNAVAIV 255
           +K +   +I +QN +LY +G  FN + I+
Sbjct: 231 LKSQYDTSIYLQNLFLYGYGAIFNFLGIL 259

Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GY97|CSTR2_ARATH CMP-sialic acid transporter 2 OS=Arabidopsis thaliana GN=At2g43240 PE=2 SV=1

 Score = 89.7 bits (221), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 103/209 (49%), Gaps = 9/209 (4%)

Query: 56  VLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLS-T 114
           +L   Q +L+  SK  GK+ +S  + NFL E  K   ++  L     H+ V +   LS +
Sbjct: 53  MLVGLQPVLVYMSKVDGKFNFSPISVNFLTEIAKVIFAMVMLLFQARHQKVGEKPLLSLS 112

Query: 115 TLDEV----IVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKK 170
           T  +     ++  +PA LY + N L++ +  Y +    ++L NL ++   VL ++I+K++
Sbjct: 113 TFVQAARNNMLLAVPAGLYAINNYLKFTMQLYFNPATVKMLSNLKVLVIAVLLKMIMKRR 172

Query: 171 LSEIQWAAFILLCCGCTTAQLNS--NSDRVLQTPLQ--GWIMAIVMALLSGFAGVYTEAI 226
            S IQW A  LL  G +  QL S       +  P+    +I   +   +   A VY E  
Sbjct: 173 FSIIQWEALALLLIGISINQLRSLPEGATTVAVPIATGAYICTFIFVTVPSLASVYNEYA 232

Query: 227 MKKRPSRNINVQNFWLYVFGMAFNAVAIV 255
           +K +   +I +QN +LY +G  FN + I+
Sbjct: 233 LKSQYDTSIYLQNLFLYGYGAIFNFLGIL 261

Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DCG9|S35A5_XENLA Probable UDP-sugar transporter protein SLC35A5 OS=Xenopus laevis GN=slc35a5 PE=2 SV=1

 Score = 87.0 bits (214), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 113/249 (45%), Gaps = 49/249 (19%)

Query: 57  LTSSQAILIVWS-KRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTT 115
           L SS+ +L+ +S     KY+Y   T N   E +K    +A   RI   E      R   +
Sbjct: 29  LGSSRLLLVKFSANEDNKYDYVPATVNVCAEAVKLLFCMAMSVRIIMTE--RRSFRCHAS 86

Query: 116 LDEVIVY---PIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLS 172
           L     Y    +PA LY + NL+ +Y+ AY+      +L N  II+T V +R+ILK++LS
Sbjct: 87  LKHFCQYMKWAVPAFLYFLDNLIIFYVLAYLQPAMAVLLSNFVIITTAVFFRLILKRQLS 146

Query: 173 EIQWAAFILL---CCGCT----TAQLN--------------SNSDRVLQTP--------- 202
            +QWA+ ++L     G T    TA                 SNS   L  P         
Sbjct: 147 CVQWASLVILFLSIMGLTSRNDTAHHEVSVDVHHHLFHSAPSNSCTYLNKPDTEAHTVSL 206

Query: 203 -----LQ------GWIMAIVMALLSGFAGVYTEAIMK--KRPSRNINVQNFWLYVFGMAF 249
                 Q      G  + ++  ++S  A +Y E I+K  ++ S +I +QN  LYVFG+ F
Sbjct: 207 KAIANFQFLHLGLGHFLILLQCVISALANIYNEKILKEGEQMSESIFIQNSKLYVFGVFF 266

Query: 250 NAVAIVIQD 258
           N + +V+ D
Sbjct: 267 NGLTLVLHD 275

Xenopus laevis (taxid: 8355)

>sp|A4IHW3|S35A4_XENTR Probable UDP-sugar transporter protein SLC35A4 OS=Xenopus tropicalis GN=slc35a4 PE=2 SV=1

 Score = 85.9 bits (211), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/204 (33%), Positives = 101/204 (49%), Gaps = 19/204 (9%)

Query: 60  SQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAA-LARIWNHEGVTDDNRLSTTLDE 118
           S A LI   K  G+  +S +    L+E  K  +SL   L + W     +    L+     
Sbjct: 38  SHAPLIYLCKVNGEIPFSSSAVVLLIELSKFVISLVFFLIQDWKSLKASVSWHLAAP--- 94

Query: 119 VIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQW-A 177
              Y +PAVLY   N L  YI  ++D   +Q+L NL I+ST VLY + L+++LS  +W +
Sbjct: 95  ---YAVPAVLYGANNNLVVYIQHFMDPSSFQVLSNLKIVSTAVLYSLFLRQRLSVRRWLS 151

Query: 178 AFILLCCGCTTAQ------LNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMK--K 229
            F+LL  G   +          +SD  L   L G ++ +   L+SG + VYTE  +K  K
Sbjct: 152 VFLLLAAGVFYSYGGIQDLEKVSSDTNLYVTLPGLLLMLAYCLISGLSAVYTEMTLKTQK 211

Query: 230 RPSRNINVQNFWLYVFGMAFNAVA 253
            P   +N+QN +LY FG+  N  A
Sbjct: 212 IP---LNMQNLYLYSFGIIINLTA 232

Xenopus tropicalis (taxid: 8364)

>sp|Q90X48|S35A5_DANRE Probable UDP-sugar transporter protein SLC35A5 OS=Danio rerio GN=slc35a5 PE=2 SV=1

 Score = 82.8 bits (203), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 121/270 (44%), Gaps = 58/270 (21%)

Query: 46  RKSVVTLAL----TVLTSSQAILIVWS-KRAGKYEYSVTTANFLVETLKCALSLAALARI 100
           R S  TLAL      L +S+ +L+ +S     KY+Y   + N + E +K    L    R+
Sbjct: 32  RSSAYTLALGLGFVTLGTSRILLLKFSGNEENKYDYLPASVNLMAEAIKLVFCLVMSVRV 91

Query: 101 WNHEGVTDDNRLSTTLDEVIVY---PIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNII 157
              EG +  +   ++    + Y    +PA LY + NL+ +Y+ AY+      +  N+ I 
Sbjct: 92  IIREGRSFKDLGCSSGASFLSYLKWSVPAFLYFLDNLIIFYVIAYLQPAMAVLFSNIVIF 151

Query: 158 STGVLYRIILKKKLSEIQWAAFILL------------------CCGCTTAQLNSNSDRVL 199
           +T  L+R++LK++LS +QWA+ I+L                    G   A +++ S+  L
Sbjct: 152 TTAFLFRVVLKRRLSWVQWASLIILFLSIVSLTTGNGDQHAMAVHGLHPAHISTPSNSCL 211

Query: 200 Q-TPLQ-----------------------------GWIMAIVMALLSGFAGVYTEAIMKK 229
           + T L                              G+++ ++   +S  A +Y E I+K+
Sbjct: 212 KYTHLHQVHQSHNESYWSRELWDSQLIHKLNSFGLGYVLLLLQCFISALANIYNEKILKE 271

Query: 230 RPS--RNINVQNFWLYVFGMAFNAVAIVIQ 257
                 +I +QN  LY+FG+ FN++ +++ 
Sbjct: 272 GEQLVESIFIQNSKLYLFGLVFNSLTLLLH 301

Danio rerio (taxid: 7955)

>sp|A6QPI1|S35A5_BOVIN Probable UDP-sugar transporter protein SLC35A5 OS=Bos taurus GN=SLC35A5 PE=2 SV=1

 Score = 80.9 bits (198), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 115/261 (44%), Gaps = 62/261 (23%)

Query: 57  LTSSQAILIVWS-KRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTT 115
           L+SS+ +L+ +S     KY+Y  TT N   E +K  L   AL   W  +     NR    
Sbjct: 28  LSSSRILLVKYSANEENKYDYLPTTVNVCSELVK--LVFCALVSFWVLKKEDHQNRKLRC 85

Query: 116 -----LDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKK 170
                    + + IPA LY + NL+ +Y+ +Y+      I  N +II+T +L+RI+LK+ 
Sbjct: 86  GSWKEFFNFMKWSIPAFLYFLDNLIVFYVLSYLQPAMAVIFSNFSIITTALLFRIVLKRH 145

Query: 171 LSEIQWAAFIL-------LCCGCTTAQ------------LNSNSDRVL----QTPLQ--- 204
           L+ IQWA+ ++       L  G  T+Q            L S S+  L    + P +   
Sbjct: 146 LNGIQWASLLILFLSIVALTSGTETSQHSLAGHGFHHDALFSPSNSCLLFRSECPRKDNC 205

Query: 205 --------------------------GWIMAIVMALLSGFAGVYTEAIMKK--RPSRNIN 236
                                     G ++ IV   +S  A +Y E I+K+  + + +I 
Sbjct: 206 TAKEWTFSEAQWNTTARVFSHIRLGLGHVLIIVQCFISSMANIYNEKILKEGNQLTESIF 265

Query: 237 VQNFWLYVFGMAFNAVAIVIQ 257
           VQN  LY FG+ FN + + +Q
Sbjct: 266 VQNSKLYFFGVLFNGLTLGLQ 286

Bos taurus (taxid: 9913)

>sp|Q93890|SRF3_CAEEL UDP-galactose/UDP-N-acetylglucosamine transporter srf-3 OS=Caenorhabditis elegans GN=srf-3 PE=1 SV=5

 Score = 80.1 bits (196), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 121/243 (49%), Gaps = 8/243 (3%)

Query: 22  ESLRGKPISVTNVASKSSELANWKRKSVVTLALTVLTSSQAILIVWSK-RAGKYEYSVTT 80
           ES    P+ + +V  +SS+ +    K+ + + LT+  S   +LI +S+ R     +  T 
Sbjct: 18  ESSVKIPVPLVSVGRESSQ-SKGNMKTAILIWLTLQNSIHTLLIRYSRAREVDAMFVSTV 76

Query: 81  ANFLVETLKCALSLAALARIWNHEGVTDDNR---LSTTLDEVIVYPIPAVLYLVKNLLQY 137
           A +L E +KC + L  +A+           R   L    D + V  IPA++Y+V+N L Y
Sbjct: 77  AVWLTEVIKCFICLFLVAQEETPRRFIHALRTQILEQPYDTLKVC-IPAMIYIVQNNLFY 135

Query: 138 YIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSN--S 195
              +++DA  + I   L I +  +   IIL++ L+  QW A  +L  G +  QL      
Sbjct: 136 VAASHLDAATFMITSQLKIFTAAIFTVIILRRSLNRTQWFALAVLFVGVSLVQLQGTKAK 195

Query: 196 DRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIV 255
           +   ++P  G++  +V   LSGFAG+Y E I+K     ++ ++N  + VF +  +  AI 
Sbjct: 196 ESSGESPFVGFVAVVVACCLSGFAGIYFEKILKGSAPVSLWMRNVQMAVFSIPASFSAIY 255

Query: 256 IQD 258
           +QD
Sbjct: 256 MQD 258

Acts as a transporter of both UDP-galactose and UDP-N-acetylglucosamine into the Golgi lumen.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
449444425	360	PREDICTED: CMP-sialic acid transporter 4	1.0	0.736	0.811	1e-128
395486311	354	CMP-sialic acid transporter-like protein	0.996	0.745	0.826	1e-126
255564904	356	CMP-sialic acid transporter, putative [R	0.996	0.741	0.840	1e-126
297802420	352	At4g35335 [Arabidopsis lyrata subsp. lyr	0.988	0.744	0.827	1e-125
50198781	352	At4g35335 [Arabidopsis thaliana] gi|5197	0.988	0.744	0.823	1e-124
240256164	352	Nucleotide-sugar transporter family prot	0.988	0.744	0.819	1e-124
297744466	354	unnamed protein product [Vitis vinifera]	0.996	0.745	0.830	1e-121
356501771	355	PREDICTED: probable UDP-sugar transporte	0.996	0.743	0.808	1e-120
225428328	707	PREDICTED: cysteine proteinase-like [Vit	0.996	0.373	0.830	1e-120
356554409	355	PREDICTED: probable UDP-sugar transporte	1.0	0.746	0.789	1e-119

>gi|449444425|ref|XP_004139975.1| PREDICTED: CMP-sialic acid transporter 4-like [Cucumis sativus]

 Score =  462 bits (1189), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 224/276 (81%), Positives = 246/276 (89%), Gaps = 11/276 (3%)

Query: 1   MEYRKIKDEDNDGGGSSSG-------DLESLR-GKPISVTNVA---SKSSELANWKRKSV 49
           MEYR+IKD++ DG G  SG       D+ESLR GKPIS +NVA   + S + + W++KS+
Sbjct: 1   MEYRRIKDQEKDGNGDGSGVGVAVADDIESLRAGKPISGSNVAKLGANSFDRSKWQQKSI 60

Query: 50  VTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDD 109
           VTLALTVLTSSQAILIVWSKRAGKYEYSVTTANF+VETLKC LSLAAL+RIW  EGVT+D
Sbjct: 61  VTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFMVETLKCVLSLAALSRIWGSEGVTED 120

Query: 110 NRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKK 169
           NRLSTT DEVIVYPIPA LYLVKNLLQYYIFAYVDAPGYQILKN NIISTG+LYRIILKK
Sbjct: 121 NRLSTTYDEVIVYPIPAALYLVKNLLQYYIFAYVDAPGYQILKNFNIISTGILYRIILKK 180

Query: 170 KLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKK 229
           KLSEIQWAAFILLC GCTTAQLNSNSD VLQTP QGW+MAI+MALLSGFAGVYTEAI+KK
Sbjct: 181 KLSEIQWAAFILLCAGCTTAQLNSNSDHVLQTPFQGWVMAIIMALLSGFAGVYTEAIIKK 240

Query: 230 RPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNK 265
           RPSRN+NVQNFWLYVFGMAFNA+A+VIQDFDA+ NK
Sbjct: 241 RPSRNVNVQNFWLYVFGMAFNAIAMVIQDFDAIANK 276

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|395486311|gb|AFN67104.1| CMP-sialic acid transporter-like protein [Vitis vinifera]

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 224/271 (82%), Positives = 238/271 (87%), Gaps = 7/271 (2%)

Query: 1   MEYRKIKDEDNDGGGSSSGDLESLRGKPIS------VTNVASKSSELANWKRKSVVTLAL 54
           MEYRK+KD D D G     D+ESLRGK +S      +  +   S +   WKRKS+VTLAL
Sbjct: 1   MEYRKLKDLDKDDGAVGD-DIESLRGKALSGAHTNNMATLGGHSIDRTKWKRKSIVTLAL 59

Query: 55  TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLST 114
           TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAAL RIW +EGVTDDNRLS+
Sbjct: 60  TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALVRIWGNEGVTDDNRLSS 119

Query: 115 TLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEI 174
           +LDEVIV+PIPA LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEI
Sbjct: 120 SLDEVIVFPIPAALYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEI 179

Query: 175 QWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRN 234
           QWAAFILLC GCTTAQLN +SD VLQ P QGW+MAIVMALLSGFAGVYTEAI+KKRPSRN
Sbjct: 180 QWAAFILLCAGCTTAQLNPSSDHVLQAPFQGWMMAIVMALLSGFAGVYTEAIIKKRPSRN 239

Query: 235 INVQNFWLYVFGMAFNAVAIVIQDFDAVMNK 265
           INVQNFWLYVFGM FNAVAIVIQDFDAVMNK
Sbjct: 240 INVQNFWLYVFGMVFNAVAIVIQDFDAVMNK 270

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564904|ref|XP_002523445.1| CMP-sialic acid transporter, putative [Ricinus communis] gi|223537273|gb|EEF38904.1| CMP-sialic acid transporter, putative [Ricinus communis]

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 227/270 (84%), Positives = 244/270 (90%), Gaps = 6/270 (2%)

Query: 1   MEYRKIKDEDNDGGGSSSGDLESLRGKPISV--TNVAS---KSSELANWKRKSVVTLALT 55
           MEYRKIKDED D G +   D+ESLR K +SV  +NVA+    S++ + WKRKS+VTLALT
Sbjct: 1   MEYRKIKDEDKDEGATGD-DIESLRNKSLSVAASNVAALGGGSNDRSKWKRKSIVTLALT 59

Query: 56  VLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTT 115
            LTSSQAILIVWSKRAG+YEYSVTTANFLVETLKC LSLAALARIW +EGVT+DNRLSTT
Sbjct: 60  FLTSSQAILIVWSKRAGRYEYSVTTANFLVETLKCVLSLAALARIWKNEGVTEDNRLSTT 119

Query: 116 LDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQ 175
           LDEV VYPIPA LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLY++ILK+KLSEIQ
Sbjct: 120 LDEVSVYPIPAALYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYQMILKRKLSEIQ 179

Query: 176 WAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNI 235
           WAAFILLC GCTTAQLN +SD VLQTP QGWIMAIVMALLSGFAGVYTEAI+KKRPSRNI
Sbjct: 180 WAAFILLCAGCTTAQLNPSSDHVLQTPYQGWIMAIVMALLSGFAGVYTEAIIKKRPSRNI 239

Query: 236 NVQNFWLYVFGMAFNAVAIVIQDFDAVMNK 265
           NVQNFWLYVFGM FNAVAIVIQDFDAVMNK
Sbjct: 240 NVQNFWLYVFGMIFNAVAIVIQDFDAVMNK 269

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297802420|ref|XP_002869094.1| At4g35335 [Arabidopsis lyrata subsp. lyrata] gi|297314930|gb|EFH45353.1| At4g35335 [Arabidopsis lyrata subsp. lyrata]

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 225/272 (82%), Positives = 237/272 (87%), Gaps = 10/272 (3%)

Query: 1   MEYRKIKDEDNDGGGSSSGDLESLRGKP-------ISVTNVASKSSELANWKRKSVVTLA 53
           MEYRKIKDED+   G+   D+ES++GK        I++  +   SSE  NWKRK VVT A
Sbjct: 1   MEYRKIKDEDDHDVGA---DIESVKGKSHTVASSNIAMATLGVGSSERINWKRKGVVTCA 57

Query: 54  LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLS 113
           LT+LTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSL AL RIW +EGVTDDNRLS
Sbjct: 58  LTILTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLLALTRIWKNEGVTDDNRLS 117

Query: 114 TTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSE 173
           TT DEV V+PIPA LYL KNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSE
Sbjct: 118 TTYDEVKVFPIPAALYLFKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSE 177

Query: 174 IQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSR 233
           IQWA FILLCCGCTTAQLNSNSDRVLQT L GW MAIVMALLSGFAGVYTEAI+KKRPSR
Sbjct: 178 IQWAGFILLCCGCTTAQLNSNSDRVLQTSLPGWTMAIVMALLSGFAGVYTEAIIKKRPSR 237

Query: 234 NINVQNFWLYVFGMAFNAVAIVIQDFDAVMNK 265
           NINVQNFWLYVFGMAFNAVAIVIQDFDAV NK
Sbjct: 238 NINVQNFWLYVFGMAFNAVAIVIQDFDAVANK 269

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|50198781|gb|AAT70424.1| At4g35335 [Arabidopsis thaliana] gi|51971024|dbj|BAD44204.1| unnamed protein product [Arabidopsis thaliana] gi|53828601|gb|AAU94410.1| At4g35335 [Arabidopsis thaliana]

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 224/272 (82%), Positives = 236/272 (86%), Gaps = 10/272 (3%)

Query: 1   MEYRKIKDEDNDGGGSSSGDLESLRGKP-------ISVTNVASKSSELANWKRKSVVTLA 53
           MEYRKIKDED+    S   D+ES++GK        I++  +   SSE  NWKRK VVT A
Sbjct: 1   MEYRKIKDEDDHDVAS---DIESVKGKSHTVASSNIAMATLGVGSSERINWKRKGVVTCA 57

Query: 54  LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLS 113
           LT+LTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSL AL RIW +EGVTDDNRLS
Sbjct: 58  LTILTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLLALTRIWKNEGVTDDNRLS 117

Query: 114 TTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSE 173
           TT DEV V+PIPA LYL KNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILK+KLSE
Sbjct: 118 TTFDEVKVFPIPAALYLFKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKRKLSE 177

Query: 174 IQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSR 233
           IQWA FILLCCGCTTAQLNSNSDRVLQT L GW MAIVMALLSGFAGVYTEAI+KKRPSR
Sbjct: 178 IQWAGFILLCCGCTTAQLNSNSDRVLQTSLPGWTMAIVMALLSGFAGVYTEAIIKKRPSR 237

Query: 234 NINVQNFWLYVFGMAFNAVAIVIQDFDAVMNK 265
           NINVQNFWLYVFGMAFNAVAIVIQDFDAV NK
Sbjct: 238 NINVQNFWLYVFGMAFNAVAIVIQDFDAVANK 269

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240256164|ref|NP_680766.5| Nucleotide-sugar transporter family protein [Arabidopsis thaliana] gi|380876874|sp|F4JN00.1|CSTR4_ARATH RecName: Full=CMP-sialic acid transporter 4; Short=CMP-SA-Tr 4; Short=CMP-Sia-Tr 4 gi|332661100|gb|AEE86500.1| Nucleotide-sugar transporter family protein [Arabidopsis thaliana]

 Score =  448 bits (1153), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 223/272 (81%), Positives = 235/272 (86%), Gaps = 10/272 (3%)

Query: 1   MEYRKIKDEDNDGGGSSSGDLESLRGKP-------ISVTNVASKSSELANWKRKSVVTLA 53
           MEYRKIKDED+    S   D+ES++GK        I++  +   SSE  NWKRK VVT A
Sbjct: 1   MEYRKIKDEDDHDVAS---DIESVKGKSHTVASSNIAMATLGVGSSERINWKRKGVVTCA 57

Query: 54  LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLS 113
           LT+LTSSQAILIVWSKRAGKYEYSVTTANFLV TLKCALSL AL RIW +EGVTDDNRLS
Sbjct: 58  LTILTSSQAILIVWSKRAGKYEYSVTTANFLVGTLKCALSLLALTRIWKNEGVTDDNRLS 117

Query: 114 TTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSE 173
           TT DEV V+PIPA LYL KNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILK+KLSE
Sbjct: 118 TTFDEVKVFPIPAALYLFKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKRKLSE 177

Query: 174 IQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSR 233
           IQWA FILLCCGCTTAQLNSNSDRVLQT L GW MAIVMALLSGFAGVYTEAI+KKRPSR
Sbjct: 178 IQWAGFILLCCGCTTAQLNSNSDRVLQTSLPGWTMAIVMALLSGFAGVYTEAIIKKRPSR 237

Query: 234 NINVQNFWLYVFGMAFNAVAIVIQDFDAVMNK 265
           NINVQNFWLYVFGMAFNAVAIVIQDFDAV NK
Sbjct: 238 NINVQNFWLYVFGMAFNAVAIVIQDFDAVANK 269

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744466|emb|CBI37728.3| unnamed protein product [Vitis vinifera]

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 225/271 (83%), Positives = 239/271 (88%), Gaps = 7/271 (2%)

Query: 1   MEYRKIKDEDNDGGGSSSGDLESLRGKPIS------VTNVASKSSELANWKRKSVVTLAL 54
           MEYRK+KD D DGG     D+ESLRGK +S      +  +   S +   WKRKS+VTLAL
Sbjct: 1   MEYRKLKDLDKDGGAGGD-DIESLRGKALSGAHTNNMATLGGHSIDRTKWKRKSIVTLAL 59

Query: 55  TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLST 114
           TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAAL RIW +EGVTDDNRLS+
Sbjct: 60  TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALVRIWGNEGVTDDNRLSS 119

Query: 115 TLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEI 174
           +LDEVIV+PIPA LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEI
Sbjct: 120 SLDEVIVFPIPAALYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEI 179

Query: 175 QWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRN 234
           QWAAFILLC GCTTAQLN +SD VLQ P QGW+MAIVMALLSGFAGVYTEAI+KKRPSRN
Sbjct: 180 QWAAFILLCAGCTTAQLNPSSDHVLQAPFQGWMMAIVMALLSGFAGVYTEAIIKKRPSRN 239

Query: 235 INVQNFWLYVFGMAFNAVAIVIQDFDAVMNK 265
           INVQNFWLYVFGM FNAVAIVIQDFDAVMNK
Sbjct: 240 INVQNFWLYVFGMVFNAVAIVIQDFDAVMNK 270

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501771|ref|XP_003519697.1| PREDICTED: probable UDP-sugar transporter protein SLC35A5-like [Glycine max]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 220/272 (80%), Positives = 233/272 (85%), Gaps = 8/272 (2%)

Query: 1   MEYRKIKDEDN--DGGGSSSGD--LESLRGKPISV---TNVASKSSELANWKRKSVVTLA 53
           MEYRKIKDED   D G    G   L S+    +S    T + S   E   WKRKSVVTLA
Sbjct: 1   MEYRKIKDEDEVRDAGVEDVGKSFLLSVPDNDLSAEAETKIDSHR-EKVKWKRKSVVTLA 59

Query: 54  LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLS 113
           LTVLTSSQAILIVWSKRAGKYEYSVTTANF+VETLKCA+SL AL RIW  +GV +DNRL+
Sbjct: 60  LTVLTSSQAILIVWSKRAGKYEYSVTTANFMVETLKCAISLVALGRIWKKDGVNEDNRLT 119

Query: 114 TTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSE 173
           TTLDEVIVYPIPA LYLVKNLLQYYIFAYVDAPGYQILKN NIISTGVLYRIILKKKLSE
Sbjct: 120 TTLDEVIVYPIPAALYLVKNLLQYYIFAYVDAPGYQILKNFNIISTGVLYRIILKKKLSE 179

Query: 174 IQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSR 233
           IQWAAF+LL  GCTTAQLNSNSDRVLQTP QGW+MAIVMALLSGFAGVYTEAI+KKRPSR
Sbjct: 180 IQWAAFVLLAAGCTTAQLNSNSDRVLQTPFQGWVMAIVMALLSGFAGVYTEAIIKKRPSR 239

Query: 234 NINVQNFWLYVFGMAFNAVAIVIQDFDAVMNK 265
           NINVQNFWLYVFGM FNAVAI++QDFDAVMNK
Sbjct: 240 NINVQNFWLYVFGMCFNAVAILVQDFDAVMNK 271

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428328|ref|XP_002279940.1| PREDICTED: cysteine proteinase-like [Vitis vinifera]

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/271 (83%), Positives = 239/271 (88%), Gaps = 7/271 (2%)

Query: 1   MEYRKIKDEDNDGGGSSSGDLESLRGKPIS------VTNVASKSSELANWKRKSVVTLAL 54
           MEYRK+KD D DGG     D+ESLRGK +S      +  +   S +   WKRKS+VTLAL
Sbjct: 1   MEYRKLKDLDKDGGAGGD-DIESLRGKALSGAHTNNMATLGGHSIDRTKWKRKSIVTLAL 59

Query: 55  TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLST 114
           TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAAL RIW +EGVTDDNRLS+
Sbjct: 60  TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALVRIWGNEGVTDDNRLSS 119

Query: 115 TLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEI 174
           +LDEVIV+PIPA LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEI
Sbjct: 120 SLDEVIVFPIPAALYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEI 179

Query: 175 QWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRN 234
           QWAAFILLC GCTTAQLN +SD VLQ P QGW+MAIVMALLSGFAGVYTEAI+KKRPSRN
Sbjct: 180 QWAAFILLCAGCTTAQLNPSSDHVLQAPFQGWMMAIVMALLSGFAGVYTEAIIKKRPSRN 239

Query: 235 INVQNFWLYVFGMAFNAVAIVIQDFDAVMNK 265
           INVQNFWLYVFGM FNAVAIVIQDFDAVMNK
Sbjct: 240 INVQNFWLYVFGMVFNAVAIVIQDFDAVMNK 270

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554409|ref|XP_003545539.1| PREDICTED: probable UDP-sugar transporter protein SLC35A5-like [Glycine max]

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 214/271 (78%), Positives = 228/271 (84%), Gaps = 6/271 (2%)

Query: 1   MEYRKIKDEDN--DGGGSSSGDLESLRGKPISVTNVAS----KSSELANWKRKSVVTLAL 54
           MEYRKIKDED   D G    G    L      +T+          E   WKRKSVVTLAL
Sbjct: 1   MEYRKIKDEDEVRDAGVEDVGKSFLLSVPDNDLTSEGETKIDSHREKVKWKRKSVVTLAL 60

Query: 55  TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLST 114
           TVLTSSQ ILIVWSKRAGKYEYSVTTANF+VETLKCA+SL AL RIW  +GV +DNRL+T
Sbjct: 61  TVLTSSQGILIVWSKRAGKYEYSVTTANFMVETLKCAISLVALGRIWKKDGVNEDNRLTT 120

Query: 115 TLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEI 174
           TLDEVIVYPIPA LYLVKNLLQYYIFAYVDAPGYQILKN NIISTGVLYRIILKK+LSEI
Sbjct: 121 TLDEVIVYPIPAALYLVKNLLQYYIFAYVDAPGYQILKNFNIISTGVLYRIILKKRLSEI 180

Query: 175 QWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRN 234
           QWAAF+LL  GCTTAQLNSNSDRVLQTP QGW+MAIVMALLSGFAGVYTEAI+KKRPSRN
Sbjct: 181 QWAAFVLLAAGCTTAQLNSNSDRVLQTPFQGWVMAIVMALLSGFAGVYTEAIIKKRPSRN 240

Query: 235 INVQNFWLYVFGMAFNAVAIVIQDFDAVMNK 265
           INVQNFWLYVFGM FNAVA+++QDFDAVMNK
Sbjct: 241 INVQNFWLYVFGMCFNAVAMLVQDFDAVMNK 271

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
TAIR|locus:504955503	352	AT4G35335 [Arabidopsis thalian	0.996	0.75	0.796	4.4e-107
TAIR|locus:2152955	340	AT5G41760 [Arabidopsis thalian	0.784	0.611	0.397	4.4e-36
ZFIN|ZDB-GENE-061103-595	314	slc35a4 "solute carrier family	0.788	0.665	0.310	9e-22
ZFIN|ZDB-GENE-030616-55	440	slc35a5 "solute carrier family	0.513	0.309	0.321	4.4e-21
RGD|1564361	438	Slc35a5 "solute carrier family	0.475	0.287	0.330	3.3e-20
UNIPROTKB|F1NTH1	432	SLC35A5 "Uncharacterized prote	0.464	0.284	0.360	3.6e-20
MGI|MGI:1921352	437	Slc35a5 "solute carrier family	0.475	0.288	0.330	4.1e-20
WB|WBGene00005153	368	srf-3 [Caenorhabditis elegans	0.879	0.633	0.286	6e-20
UNIPROTKB|Q93890	368	srf-3 "UDP-galactose/UDP-N-ace	0.879	0.633	0.286	6e-20
ZFIN|ZDB-GENE-080716-17	337	slc35a1 "solute carrier family	0.792	0.623	0.287	7.2e-20

TAIR|locus:504955503 AT4G35335 [Arabidopsis thaliana (taxid:3702)]

 Score = 1059 (377.8 bits), Expect = 4.4e-107, P = 4.4e-107
 Identities = 215/270 (79%), Positives = 225/270 (83%)

Query:     1 MEYRKIKXXXXXXXXXXXXXXXXXRGKPISVTNVASK-----SSELANWKRKSVVTLALT 55
             MEYRKIK                 +   ++ +N+A       SSE  NWKRK VVT ALT
Sbjct:     1 MEYRKIKDEDDHDVASDIESVKG-KSHTVASSNIAMATLGVGSSERINWKRKGVVTCALT 59

Query:    56 VLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTT 115
             +LTSSQAILIVWSKRAGKYEYSVTTANFLV TLKCALSL AL RIW +EGVTDDNRLSTT
Sbjct:    60 ILTSSQAILIVWSKRAGKYEYSVTTANFLVGTLKCALSLLALTRIWKNEGVTDDNRLSTT 119

Query:   116 LDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQ 175
              DEV V+PIPA LYL KNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILK+KLSEIQ
Sbjct:   120 FDEVKVFPIPAALYLFKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKRKLSEIQ 179

Query:   176 WAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNI 235
             WA FILLCCGCTTAQLNSNSDRVLQT L GW MAIVMALLSGFAGVYTEAI+KKRPSRNI
Sbjct:   180 WAGFILLCCGCTTAQLNSNSDRVLQTSLPGWTMAIVMALLSGFAGVYTEAIIKKRPSRNI 239

Query:   236 NVQNFWLYVFGMAFNAVAIVIQDFDAVMNK 265
             NVQNFWLYVFGMAFNAVAIVIQDFDAV NK
Sbjct:   240 NVQNFWLYVFGMAFNAVAIVIQDFDAVANK 269

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA;ISS

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2152955 AT5G41760 [Arabidopsis thaliana (taxid:3702)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 85/214 (39%), Positives = 126/214 (58%)

Query:    50 VTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDD 109
             V + LT+LTSSQ IL   S+  G Y+Y   T  FL E  K  +S   L R       T  
Sbjct:     9 VAVLLTILTSSQGILTTLSQSDGGYKYDYATVPFLAEVFKLIISGLFLWREMRTSSSTT- 67

Query:   110 NRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKK 169
             +R++T    V ++ IP+++YL+ N +Q+    YVD   YQI+ NL I++TG+L+R+ LK+
Sbjct:    68 SRITTDWKSVRLFVIPSLIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFRLFLKR 127

Query:   170 KLSEIQWAAFILLCCGCTTAQLN----SNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEA 225
             KLS++QW A  LL  G TT+Q+     ++ D +   P+QG+++ I+ A LS  AG+YTE 
Sbjct:   128 KLSKLQWMAIGLLAVGTTTSQVKGCGEASCDSLFTAPIQGYLLGILSAGLSALAGIYTEF 187

Query:   226 IMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDF 259
             +MK R +  +  QN  LY FG  FN   ++  DF
Sbjct:   188 LMK-RNNDTLYWQNLQLYTFGSLFNVARLIADDF 220

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA;ISS

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0005456 "CMP-N-acetylneuraminate transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015780 "nucleotide-sugar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=ISS;IDA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IDA

GO:0015739 "sialic acid transport" evidence=IDA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

ZFIN|ZDB-GENE-061103-595 slc35a4 "solute carrier family 35, member A4" [Danio rerio (taxid:7955)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 68/219 (31%), Positives = 108/219 (49%)

Query:    37 KSSELANWKRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAA 96
             +SS  A   R   + L L ++  S A L+   K   +  +S ++   L+ET K  +S A+
Sbjct:    11 ESSSPALRLRWLFLLLLLVLIYGSHAPLLSLCKTQAQIPFSASSCVLLIETSKLFISFAS 70

Query:    97 LARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNI 156
             L       G     R+S ++     Y +PAVLY   N L  ++ AY+D   +Q+L NL I
Sbjct:    71 LLA----SGSVSTLRISISMTTASPYAVPAVLYAFNNHLVVFMQAYMDPSSFQVLSNLKI 126

Query:   157 ISTGVLYRIILKKKLSEIQWAAF-ILLCCG----CTTAQLNSNSDRVLQTPLQGWIMAIV 211
              ST +LY   L K+L   QW A  +L+  G    C +  L    +  +     G ++ +V
Sbjct:   127 ASTALLYTSCLGKRLHRRQWFAMGLLVSAGVSHSCFSYDLEGKQETAVYITSWGLLLVLV 186

Query:   212 MALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFN 250
                +SG A VYTE ++K +    +++QN +LY FG+  N
Sbjct:   187 YCFVSGLAAVYTERVLKSQ-RLPLSMQNLFLYAFGVVVN 224

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

ZFIN|ZDB-GENE-030616-55 slc35a5 "solute carrier family 35, member A5" [Danio rerio (taxid:7955)]

 Score = 183 (69.5 bits), Expect = 4.4e-21, Sum P(2) = 4.4e-21
 Identities = 47/146 (32%), Positives = 78/146 (53%)

Query:    46 RKSVVTLAL----TVLTSSQAILIVWS-KRAGKYEYSVTTANFLVETLKCALSLAALARI 100
             R S  TLAL      L +S+ +L+ +S     KY+Y   + N + E +K    L    R+
Sbjct:    32 RSSAYTLALGLGFVTLGTSRILLLKFSGNEENKYDYLPASVNLMAEAIKLVFCLVMSVRV 91

Query:   101 WNHEGVT-DDNRLSTTLD--EVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQIL-KNLNI 156
                EG +  D   S+       + + +PA LY + NL+ +Y+ AY+  P   +L  N+ I
Sbjct:    92 IIREGRSFKDLGCSSGASFLSYLKWSVPAFLYFLDNLIIFYVIAYLQ-PAMAVLFSNIVI 150

Query:   157 ISTGVLYRIILKKKLSEIQWAAFILL 182
              +T  L+R++LK++LS +QWA+ I+L
Sbjct:   151 FTTAFLFRVVLKRRLSWVQWASLIIL 176

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

RGD|1564361 Slc35a5 "solute carrier family 35, member A5" [Rattus norvegicus (taxid:10116)]

 Score = 179 (68.1 bits), Expect = 3.3e-20, Sum P(2) = 3.3e-20
 Identities = 43/130 (33%), Positives = 71/130 (54%)

Query:    57 LTSSQAILIVWS-KRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTT 115
             L+SS+ +L+ +S     KY+Y  TT N   E +K  L +     I   E     +   T+
Sbjct:    42 LSSSRILLVKYSANEENKYDYLPTTVNVCSELMKLILCILVSLCIVKKEDHQSKHVRCTS 101

Query:   116 LDEV---IVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLS 172
               E    + + IPA LY + NL+ +Y+ +Y+      I  N +II+T +L+RI+LK+ L+
Sbjct:   102 WKEFSGFLKWSIPAFLYFLDNLIVFYVLSYLQPAMAVIFSNFSIITTALLFRIVLKRHLN 161

Query:   173 EIQWAAFILL 182
              IQWA+ ++L
Sbjct:   162 WIQWASLLIL 171

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1NTH1 SLC35A5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 182 (69.1 bits), Expect = 3.6e-20, Sum P(2) = 3.6e-20
 Identities = 48/133 (36%), Positives = 74/133 (55%)

Query:    57 LTSSQAILIVWSKRA-GKYEYSVTTANFLVETLKCALSLAALARIW--NHEGVTD--DNR 111
             L SS+ +L+ +S     KY+Y  TT N   E +K  L L  +  +W    EG  D     
Sbjct:    30 LGSSRILLMKYSANEDNKYDYLPTTVNICSEVVK--LFLCVVLALWVKKKEGCLDRPSGC 87

Query:   112 LS-TTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQIL-KNLNIISTGVLYRIILKK 169
             LS       + + IPA LY + NL+ +Y+ +Y+  P   +L  N  II+T +L+RI+LK+
Sbjct:    88 LSWKNFCNSMKWSIPAFLYFLDNLIVFYVLSYLQ-PAMAVLFSNFVIITTALLFRIVLKR 146

Query:   170 KLSEIQWAAFILL 182
             KLS +QWA+ ++L
Sbjct:   147 KLSWVQWASLVIL 159

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1921352 Slc35a5 "solute carrier family 35, member A5" [Mus musculus (taxid:10090)]

 Score = 179 (68.1 bits), Expect = 4.1e-20, Sum P(2) = 4.1e-20
 Identities = 43/130 (33%), Positives = 73/130 (56%)

Query:    57 LTSSQAILIVWS-KRAGKYEYSVTTANFLVETLKCALS-LAALARIWNHEGVTDDNRLST 114
             L+SS+ +L+ +S     KY+Y  TT N   E +K  L  L +L  I   +  +   R ++
Sbjct:    41 LSSSRILLVKYSANEENKYDYLPTTVNVCSELMKLILCILVSLCVIKKEDHQSRHLRCTS 100

Query:   115 --TLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLS 172
                    + + IPA LY + NL+ +Y+ +Y+      I  N +II+T +L+RI+LK+ L+
Sbjct:   101 WKEFSSFMKWSIPAFLYFLDNLIVFYVLSYLQPAMAVIFSNFSIITTALLFRIVLKRHLN 160

Query:   173 EIQWAAFILL 182
              IQWA+ ++L
Sbjct:   161 WIQWASLLIL 170

GO:0000139 "Golgi membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

WB|WBGene00005153 srf-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 238 (88.8 bits), Expect = 6.0e-20, P = 6.0e-20
 Identities = 69/241 (28%), Positives = 120/241 (49%)

Query:    28 PISVTNVASKSSELANWKRKSVVTLALTVLTSSQAILIVWSK-RAGKYEYSVTTANFLVE 86
             P+ + +V  +SS+ +    K+ + + LT+  S   +LI +S+ R     +  T A +L E
Sbjct:    24 PVPLVSVGRESSQ-SKGNMKTAILIWLTLQNSIHTLLIRYSRAREVDAMFVSTVAVWLTE 82

Query:    87 TLKCALSLAALARIWNHEGVTDDNR---LSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYV 143
              +KC + L  +A+           R   L    D + V  IPA++Y+V+N L Y   +++
Sbjct:    83 VIKCFICLFLVAQEETPRRFIHALRTQILEQPYDTLKVC-IPAMIYIVQNNLFYVAASHL 141

Query:   144 DAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVL--QT 201
             DA  + I   L I +  +   IIL++ L+  QW A  +L  G +  QL     +    ++
Sbjct:   142 DAATFMITSQLKIFTAAIFTVIILRRSLNRTQWFALAVLFVGVSLVQLQGTKAKESSGES 201

Query:   202 PLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDA 261
             P  G++  +V   LSGFAG+Y E I+K     ++ ++N  + VF +  +  AI +QD   
Sbjct:   202 PFVGFVAVVVACCLSGFAGIYFEKILKGSAPVSLWMRNVQMAVFSIPASFSAIYMQDSKT 261

Query:   262 V 262
             V
Sbjct:   262 V 262

GO:0016020 "membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0005459 "UDP-galactose transmembrane transporter activity" evidence=IDA

GO:0005462 "UDP-N-acetylglucosamine transmembrane transporter activity" evidence=IDA

GO:0015785 "UDP-galactose transport" evidence=IDA

GO:0015788 "UDP-N-acetylglucosamine transport" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IC

UNIPROTKB|Q93890 srf-3 "UDP-galactose/UDP-N-acetylglucosamine transporter srf-3" [Caenorhabditis elegans (taxid:6239)]

 Score = 238 (88.8 bits), Expect = 6.0e-20, P = 6.0e-20
 Identities = 69/241 (28%), Positives = 120/241 (49%)

Query:    28 PISVTNVASKSSELANWKRKSVVTLALTVLTSSQAILIVWSK-RAGKYEYSVTTANFLVE 86
             P+ + +V  +SS+ +    K+ + + LT+  S   +LI +S+ R     +  T A +L E
Sbjct:    24 PVPLVSVGRESSQ-SKGNMKTAILIWLTLQNSIHTLLIRYSRAREVDAMFVSTVAVWLTE 82

Query:    87 TLKCALSLAALARIWNHEGVTDDNR---LSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYV 143
              +KC + L  +A+           R   L    D + V  IPA++Y+V+N L Y   +++
Sbjct:    83 VIKCFICLFLVAQEETPRRFIHALRTQILEQPYDTLKVC-IPAMIYIVQNNLFYVAASHL 141

Query:   144 DAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVL--QT 201
             DA  + I   L I +  +   IIL++ L+  QW A  +L  G +  QL     +    ++
Sbjct:   142 DAATFMITSQLKIFTAAIFTVIILRRSLNRTQWFALAVLFVGVSLVQLQGTKAKESSGES 201

Query:   202 PLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDA 261
             P  G++  +V   LSGFAG+Y E I+K     ++ ++N  + VF +  +  AI +QD   
Sbjct:   202 PFVGFVAVVVACCLSGFAGIYFEKILKGSAPVSLWMRNVQMAVFSIPASFSAIYMQDSKT 261

Query:   262 V 262
             V
Sbjct:   262 V 262

GO:0072334 "UDP-galactose transmembrane transport" evidence=IDA

GO:0030173 "integral to Golgi membrane" evidence=IDA

GO:0015788 "UDP-N-acetylglucosamine transport" evidence=IDA

GO:0005462 "UDP-N-acetylglucosamine transmembrane transporter activity" evidence=IDA

GO:0015785 "UDP-galactose transport" evidence=IDA

GO:0005459 "UDP-galactose transmembrane transporter activity" evidence=IDA

ZFIN|ZDB-GENE-080716-17 slc35a1 "solute carrier family 35 (CMP-sialic acid transporter), member A1" [Danio rerio (taxid:7955)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 63/219 (28%), Positives = 113/219 (51%)

Query:    54 LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEG---VTDDN 110
             +T++ ++  + + +++      Y  TTA  L E +K  LSL  L R     G        
Sbjct:    18 MTLIAATYTVALRYTRTVSTELYFSTTAVCLAEIIKLLLSLIMLVRETGDVGRCRAALVT 77

Query:   111 RLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKK 170
              +  +  E++   +P+V+Y ++N + +   + +DA  YQ+   L I  T +   ++L + 
Sbjct:    78 HIFRSPKELLKLSVPSVVYAIQNNMAFVALSNLDAAVYQVTYQLKIPCTALCTVLMLNRS 137

Query:   171 LSEIQWAAFILLCCGCTTAQL---NSNSDRVLQTPLQGWIMAIVMALL-SGFAGVYTEAI 226
             LS +QW +  +LC G T  Q    +S   +V Q P  G+ MAI +A+L SGFAGVY E +
Sbjct:   138 LSRLQWFSVFMLCAGVTLVQWTPPHSTKVQVEQNPFLGF-MAIAVAVLCSGFAGVYFEKV 196

Query:   227 MKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNK 265
             +K   + ++ V+N  +Y+ G+A   + + + D   V+ K
Sbjct:   197 LKSSDT-SLWVRNIQMYLSGIAVTLMGVYMTDGARVLEK 234

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
F4JN00	CSTR4_ARATH	No assigned EC number	0.8198	0.9886	0.7443	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh1_pm.C_scaffold_7000440 annotation not avaliable (352 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	265
pfam04142	238	pfam04142, Nuc_sug_transp, Nucleotide-sugar transp	3e-27
pfam08449	303	pfam08449, UAA, UAA transporter family	2e-07
TIGR00803	222	TIGR00803, nst, UDP-galactose transporter	3e-07

>gnl|CDD|217924 pfam04142, Nuc_sug_transp, Nucleotide-sugar transporter

 Score =  105 bits (263), Expect = 3e-27
 Identities = 51/148 (34%), Positives = 77/148 (52%), Gaps = 7/148 (4%)

Query: 124 IPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLC 183
           +PA +Y ++N L Y   + +DA  YQ+   L I++T +   ++L +KLS  QWA+ +LL 
Sbjct: 22  VPAFIYTLQNNLLYVALSNLDAATYQVTYQLKILTTALFSVLMLGRKLSWYQWASLLLLF 81

Query: 184 CGCTTAQLNS-----NSDRVL-QTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINV 237
            G    QL+      NS R   Q P  G    +     SGFAGVY E I+K   + +I +
Sbjct: 82  LGVAIVQLDQKSSETNSKRGAEQNPGLGLSAVLAACFTSGFAGVYFEKILKG-SNTSIWI 140

Query: 238 QNFWLYVFGMAFNAVAIVIQDFDAVMNK 265
           +N  LY FG+ F  +   + D  A+  K
Sbjct: 141 RNIQLYFFGIFFALLTCWLYDGSAISEK 168

This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. Human SLC35A1 transports CMP-sialic acid, SLC35A2 transports UDP-galactose and SLC35A3 transports UDP-GlcNAc. Length = 238

>gnl|CDD|219846 pfam08449, UAA, UAA transporter family

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 33/186 (17%), Positives = 68/186 (36%), Gaps = 18/186 (9%)

Query: 78  VTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQY 137
           +T A FL  +L     +  L  +   +       L T       Y +    + + ++L  
Sbjct: 35  LTFAQFLFISL-----VGLLYLLLFKKLKPRKIPLKT-------YVLIVATFFLSSVLNN 82

Query: 138 YIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDR 197
               Y+  P + I K+  +I   +L  +I  K+ S +Q+ + +L+  G     L S  D 
Sbjct: 83  EALKYISYPTHVIFKSCKLIPVMILGILIYGKRYSSLQYLSALLITLGVIIFTLASAKDS 142

Query: 198 VLQ-----TPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAV 252
                   +   G  +     L+    G   E + KK    +  +  F+ ++  + F  +
Sbjct: 143 KNSKLTTFSDNVGIALLFGALLMDALTGNTQEKLYKKYGKHSKEMM-FYSHLLSLPFFLL 201

Query: 253 AIVIQD 258
            ++   
Sbjct: 202 GLLDIR 207

This family includes transporters with a specificity for UDP-N-acetylglucosamine. Length = 303

>gnl|CDD|129885 TIGR00803, nst, UDP-galactose transporter

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 42/146 (28%), Positives = 66/146 (45%), Gaps = 8/146 (5%)

Query: 124 IPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLC 183
           +P  +   +N L       + A G Q+ + L I+ST ++    L   L + QW +  LL 
Sbjct: 4   VPIHIIFKQNNLVLIALGNLLAAGKQVTQ-LKILSTALMTLGSLVASLGDDQWFSLKLLK 62

Query: 184 CGCTTAQLNSNSDRVL--QTPLQGWIMAIVMALLS-GFAGVYTEAIMK-KRPSRNINVQN 239
            G    Q+  +S + L    P+ G + A++ ALLS GFAGVY E I+K           N
Sbjct: 63  LGVAIVQMVQSSAKTLMFGNPVVG-LSAVLSALLSSGFAGVYFEKILKDGDTMFWSR--N 119

Query: 240 FWLYVFGMAFNAVAIVIQDFDAVMNK 265
             L +FG+      ++  D   + N 
Sbjct: 120 LQLPLFGLFSTFSVLLWSDGTLISNF 145

The 10-12 TMS Nucleotide Sugar Transporters (TC 2.A.7.10)Nucleotide-sugar transporters (NSTs) are found in the Golgi apparatus and the endoplasmic reticulum of eukaryotic cells. Members of the family have been sequenced from yeast, protozoans and animals. Animals such as C. elegans possess many of these transporters. Humans have at least two closely related isoforms of the UDP-galactose:UMP exchange transporter.NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids. Length = 222

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	265
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	100.0
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	100.0
KOG3912	372	consensus Predicted integral membrane protein [Gen	99.84
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.73
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	99.68
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.59
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.45
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.42
PLN00411	358	nodulin MtN21 family protein; Provisional	99.39
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.28
PRK11272	292	putative DMT superfamily transporter inner membran	99.24
PRK15430	296	putative chloramphenical resistance permease RarD;	99.21
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.19
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.18
PRK11689	295	aromatic amino acid exporter; Provisional	98.97
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.88
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	98.76
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.74
KOG1443	349	consensus Predicted integral membrane protein [Fun	98.72
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.67
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	98.6
KOG1581	327	consensus UDP-galactose transporter related protei	98.56
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.49
KOG2766	336	consensus Predicted membrane protein [Function unk	98.47
COG2510	140	Predicted membrane protein [Function unknown]	98.38
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	98.35
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.34
KOG2765	416	consensus Predicted membrane protein [Function unk	98.25
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.2
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.11
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	98.03
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	98.03
KOG1580	337	consensus UDP-galactose transporter related protei	97.96
PRK11431	105	multidrug efflux system protein; Provisional	97.82
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.79
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	97.77
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	97.75
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.75
COG2076	106	EmrE Membrane transporters of cations and cationic	97.72
COG2962	293	RarD Predicted permeases [General function predict	97.68
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.68
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	97.65
PRK11689	295	aromatic amino acid exporter; Provisional	97.62
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	97.61
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	97.56
PLN00411	358	nodulin MtN21 family protein; Provisional	97.54
PRK10532	293	threonine and homoserine efflux system; Provisiona	97.52
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	97.38
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.35
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	97.35
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	97.32
PRK11272	292	putative DMT superfamily transporter inner membran	97.31
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.3
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.3
KOG4510	346	consensus Permease of the drug/metabolite transpor	97.25
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	97.0
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.99
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	96.92
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	96.8
KOG1582	367	consensus UDP-galactose transporter related protei	96.7
PRK15430	296	putative chloramphenical resistance permease RarD;	96.63
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	96.33
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	96.26
COG0697	292	RhaT Permeases of the drug/metabolite transporter	96.2
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	95.99
KOG2922	335	consensus Uncharacterized conserved protein [Funct	95.48
PRK13499	345	rhamnose-proton symporter; Provisional	94.29
KOG1580	337	consensus UDP-galactose transporter related protei	94.01
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	93.82
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	93.65
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	93.25
PRK13499	345	rhamnose-proton symporter; Provisional	92.26
KOG1581	327	consensus UDP-galactose transporter related protei	90.63
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	90.04
COG2962	293	RarD Predicted permeases [General function predict	89.47

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.3e-46  Score=342.88  Aligned_cols=217  Identities=32%  Similarity=0.519  Sum_probs=194.9

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhh--cCC--CCCCcccccchhhhh
Q 024649           46 RKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNH--EGV--TDDNRLSTTLDEVIV  121 (265)
Q Consensus        46 ~~~~~l~lL~l~~s~~~ll~~~s~~~g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~  121 (265)
                      .++++++.+++|+++.++++||++.+++++|.++|+|+++|++|+++|..+++++.+.  ++.  ..+......|+|..+
T Consensus        15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk   94 (345)
T KOG2234|consen   15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK   94 (345)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence            8999999999999999999999999779999999999999999999999999877432  111  112223356789999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccC---CC---
Q 024649          122 YPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS---NS---  195 (265)
Q Consensus       122 ~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~---~~---  195 (265)
                      .+|||++|++|||++|++++|+||+|||+++|+||++||+|++++|+||++++||.+++++++|++++|++.   .+   
T Consensus        95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~  174 (345)
T KOG2234|consen   95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKS  174 (345)
T ss_pred             HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999432   22   


Q ss_pred             CccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHhcChhhhh
Q 024649          196 DRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVM  263 (265)
Q Consensus       196 ~~~~~~~~~G~~~vl~a~~ls~~a~V~~E~~lK~~~~~~~~~~n~~L~~~g~~~~~~~~~~~d~~~v~  263 (265)
                      +.+.++++.|+.+++.+|++||+||||+||++|+++. ++|+||+|||++|++++++.++..|++++.
T Consensus       175 ~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~-s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~  241 (345)
T KOG2234|consen  175 ESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNV-SLWIRNIQLYFFGILFNLLTILLQDGEAIN  241 (345)
T ss_pred             CCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence            2235789999999999999999999999999999996 999999999999999999999999999874

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=100.00  E-value=1.1e-34  Score=258.15  Aligned_cols=152  Identities=34%  Similarity=0.632  Sum_probs=138.9

Q ss_pred             ccccchhhhhhhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccc
Q 024649          112 LSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL  191 (265)
Q Consensus       112 ~~~~~~~~~~~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~  191 (265)
                      ....+|+.+++++||++|++||+|.|++++++||++||+++|+||++||+|++++||||++++||.|++++++|++++|.
T Consensus        10 ~~~~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~   89 (244)
T PF04142_consen   10 VWKSPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQL   89 (244)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeec
Confidence            34577899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCCCC------c------cccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHhcCh
Q 024649          192 NSNSD------R------VLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDF  259 (265)
Q Consensus       192 ~~~~~------~------~~~~~~~G~~~vl~a~~ls~~a~V~~E~~lK~~~~~~~~~~n~~L~~~g~~~~~~~~~~~d~  259 (265)
                      ++..+      +      ...++..|++++++++++||+++||+||++|+++. |+|+||+|||++|++++++.....|+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~-s~~~~N~qL~~~gi~~~~~~~~~~~~  168 (244)
T PF04142_consen   90 SSSQSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNV-SLWIQNMQLYLFGILFNLLALLLSDG  168 (244)
T ss_pred             CCccccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccch-hHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            76432      0      12457899999999999999999999999999884 99999999999999999999888888


Q ss_pred             hhhhc
Q 024649          260 DAVMN  264 (265)
Q Consensus       260 ~~v~~  264 (265)
                      +++.+
T Consensus       169 ~~~~~  173 (244)
T PF04142_consen  169 SAISE  173 (244)
T ss_pred             ccccc
Confidence            87654

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=99.84  E-value=2.1e-19  Score=159.72  Aligned_cols=204  Identities=20%  Similarity=0.260  Sum_probs=155.8

Q ss_pred             HHHHHHHHHHhhhHHHHHHHhhc---C----CCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CCc-ccc--cc
Q 024649           48 SVVTLALTVLTSSQAILIVWSKR---A----GKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTD-DNR-LST--TL  116 (265)
Q Consensus        48 ~~~l~lL~l~~s~~~ll~~~s~~---~----g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~-~~~-~~~--~~  116 (265)
                      .++-+.++...+.++++.||+.+   +    -++|+.++..+|+.|++.+.+-.++-.+ ...+|... -.. ...  ++
T Consensus         5 v~ls~imvvsGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~-sn~~g~~s~~~~ilsq~~~p   83 (372)
T KOG3912|consen    5 VFLSLIMVVSGSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLR-SNGQGVSSDLDSILSQDSSP   83 (372)
T ss_pred             hhhhhhhhhhccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCcccccccccccccCC
Confidence            34445677778899999999975   2    2589999999999999855442222211 11122111 001 111  12


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCC--
Q 024649          117 DEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSN--  194 (265)
Q Consensus       117 ~~~~~~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~--  194 (265)
                      -+...+..||+++.....++|+|+.+..++.||++++.-|+||++|+..+|||+++..||+++....+|+++++..+.  
T Consensus        84 f~p~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~  163 (372)
T KOG3912|consen   84 FNPVLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHL  163 (372)
T ss_pred             CCcceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeeccc
Confidence            223455669999999999999999999999999999999999999999999999999999999999999999986532  


Q ss_pred             -CC--ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH-HHHHHHH
Q 024649          195 -SD--RVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFG-MAFNAVA  253 (265)
Q Consensus       195 -~~--~~~~~~~~G~~~vl~a~~ls~~a~V~~E~~lK~~~~~~~~~~n~~L~~~g-~~~~~~~  253 (265)
                       ++  +..++.+.|.++++++.++-|.+-|++||.+|+++. ....--.|-+.|| +++.+++
T Consensus       164 ~~~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV-~pl~avg~eGlfG~v~~slL~  225 (372)
T KOG3912|consen  164 VTDPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNV-APLQAVGWEGLFGLVILSLLA  225 (372)
T ss_pred             ccCCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccC-CHHHHhhhhhhHHHHHHHHHH
Confidence             11  123567899999999999999999999999999985 6666777888888 4444444

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.73  E-value=7.3e-16  Score=142.78  Aligned_cols=145  Identities=19%  Similarity=0.224  Sum_probs=128.7

Q ss_pred             chhhhhhhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCC-
Q 024649          116 LDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSN-  194 (265)
Q Consensus       116 ~~~~~~~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~-  194 (265)
                      ++.+++|.+.|+++...|.+...|++|.+.+..|++.++.|+++.++++++||+|+++.||.|+++.+.|+.++...+. 
T Consensus        76 ~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~  155 (334)
T PF06027_consen   76 KRPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVL  155 (334)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeeccc
Confidence            4667899999999999999999999999999999999999999999999999999999999999999999988766542 


Q ss_pred             -CC--ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHhcChhhhh
Q 024649          195 -SD--RVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVM  263 (265)
Q Consensus       195 -~~--~~~~~~~~G~~~vl~a~~ls~~a~V~~E~~lK~~~~~~~~~~n~~L~~~g~~~~~~~~~~~d~~~v~  263 (265)
                       ++  ....+++.|-+++++++++.|+++|++|+..|+.   +......++++||.+++.+.....|++++.
T Consensus       156 ~~~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~---~~~~~lg~~Glfg~ii~~iq~~ile~~~i~  224 (334)
T PF06027_consen  156 SGSDSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKA---PRVEFLGMLGLFGFIISGIQLAILERSGIE  224 (334)
T ss_pred             ccccCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccC---CHHHHHHHHHHHHHHHHHHHHHheehhhhh
Confidence             11  2346789999999999999999999999999974   456777899999999998887777777654

Some of the sequences in this family are annotated as putative membrane proteins.

>TIGR00803 nst UDP-galactose transporter

Probab=99.68  E-value=3.6e-16  Score=136.71  Aligned_cols=140  Identities=26%  Similarity=0.354  Sum_probs=124.3

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCCCC--cc
Q 024649          121 VYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSD--RV  198 (265)
Q Consensus       121 ~~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~~~--~~  198 (265)
                      ++++|+..|+.+|++.++++.+.++..+++. |.|++.|+++...+++++++..||.++..+..|+..++.++..+  ..
T Consensus         1 ~isvPa~~~~~s~~l~~v~l~~~~~~~~~~~-~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~   79 (222)
T TIGR00803         1 KLSVPIHIIFKQNNLVLIALGNLLAAGKQVT-QLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLM   79 (222)
T ss_pred             CccccchHHHHhcchHHHHHhcccccceeee-hHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccc
Confidence            3689999999999999999999999999999 99999999999999999999999999999999999998775432  12


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHhcChhhh
Q 024649          199 LQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAV  262 (265)
Q Consensus       199 ~~~~~~G~~~vl~a~~ls~~a~V~~E~~lK~~~~~~~~~~n~~L~~~g~~~~~~~~~~~d~~~v  262 (265)
                      .++...|..+++.++++++++++|+|+.+|+++. ++|.||+++++++.+.+..+....|++.+
T Consensus        80 ~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  142 (222)
T TIGR00803        80 FGNPVVGLSAVLSALLSSGFAGVYFEKILKDGDT-MFWSRNLQLPLFGLFSTFSVLLWSDGTLI  142 (222)
T ss_pred             cccHHHHHHHHHHHHHHHhhhHHHHHHcccCCCC-chHHHHHHHHHHHHHHHHHHHhhcccchh
Confidence            2467889999999999999999999999888765 89999999999999988776666665544

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.59  E-value=4.7e-13  Score=122.44  Aligned_cols=189  Identities=20%  Similarity=0.259  Sum_probs=141.2

Q ss_pred             HhhhHHHHHHH-hhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHHHHHHHHHH
Q 024649           57 LTSSQAILIVW-SKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLL  135 (265)
Q Consensus        57 ~~s~~~ll~~~-s~~~g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPa~ly~~~n~L  135 (265)
                      ..+...++... .+.+... -.+....++..+.-.+++....... +.+        .........|+++++++.+.+.+
T Consensus        11 ~~~~~g~~qE~i~~~~~~~-~~~~~lt~~q~~~~~~~~~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~   80 (303)
T PF08449_consen   11 GCCSYGILQEKIMTTPYGS-PFPLFLTFVQFAFNALFSFILLSLF-KFP--------KSRKIPLKKYAILSFLFFLASVL   80 (303)
T ss_pred             HHHHHHHHHHHHHcCCCCC-cccHHHHHHHHHHHHHHHHHHHHhc-ccc--------CCCcChHHHHHHHHHHHHHHHHH
Confidence            33445555543 2322221 2346666666666555555443321 100        01122356899999999999999


Q ss_pred             HHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCCCCccc-----cchhhHHHHHH
Q 024649          136 QYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVL-----QTPLQGWIMAI  210 (265)
Q Consensus       136 ~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~~~~~~-----~~~~~G~~~vl  210 (265)
                      .+.+++|+|.+++++++++|+++|++++++++|||++++||.++++.++|+++..+++..++..     .....|+++++
T Consensus        81 ~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~  160 (303)
T PF08449_consen   81 SNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLL  160 (303)
T ss_pred             HHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999988765432111     12234999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHh
Q 024649          211 VMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVI  256 (265)
Q Consensus       211 ~a~~ls~~a~V~~E~~lK~~~~~~~~~~n~~L~~~g~~~~~~~~~~  256 (265)
                      ++.++.|+.++++|+++++++. +.|..-....+++.++.++....
T Consensus       161 ~sl~~~a~~~~~qe~~~~~~~~-~~~~~mfy~n~~~~~~~~~~~~~  205 (303)
T PF08449_consen  161 LSLLLDAFTGVYQEKLFKKYGK-SPWELMFYTNLFSLPFLLILLFL  205 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999886 77888888889998888776544

; GO: 0055085 transmembrane transport

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.45  E-value=6.3e-11  Score=110.78  Aligned_cols=186  Identities=13%  Similarity=0.109  Sum_probs=128.5

Q ss_pred             HHhhhHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccch-hhhhhhhhHHHHHHHHH
Q 024649           56 VLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLD-EVIVYPIPAVLYLVKNL  134 (265)
Q Consensus        56 l~~s~~~ll~~~s~~~g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iPa~ly~~~n~  134 (265)
                      ..+....+..|+--++  .+| |.+...+.-+...+++.++..  .+..   ..+++ ..++ +.......|+++...+.
T Consensus        59 ~~s~~~~~~nK~vl~~--~~~-P~~l~~~~~~~~~l~~~~~~~--~~~~---~~~~~-~~~~~~~~~llp~gl~~~~~~~  129 (350)
T PTZ00343         59 ALNVLYVVDNKLALNM--LPL-PWTISSLQLFVGWLFALLYWA--TGFR---KIPRI-KSLKLFLKNFLPQGLCHLFVHF  129 (350)
T ss_pred             HHHHHHHHHHHHHHHh--CCh-hHHHHHHHHHHHHHHHHHHHH--hCCC---CCCCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence            3445556666655443  232 666777776666444433321  1111   11222 1122 44567777788887778


Q ss_pred             HHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCCCCccccchhhHHHHHHHHHH
Q 024649          135 LQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMAL  214 (265)
Q Consensus       135 L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~~~~~~~~~~~G~~~vl~a~~  214 (265)
                      ..++++++.+++.+|++..+.|++|++++++++|||+++++|.++++.++|+.+...++.     +....|+++.+++++
T Consensus       130 ~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~-----~~~~~G~~~~l~s~~  204 (350)
T PTZ00343        130 GAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKEL-----HFTWLAFWCAMLSNL  204 (350)
T ss_pred             HHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccc-----hhHHHHHHHHHHHHH
Confidence            888999999999999999999999999999999999999999999999999998754321     234679999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCC--ChHHHHHHH--HHHHHHHHHHHHH
Q 024649          215 LSGFAGVYTEAIMKKRPSR--NINVQNFWL--YVFGMAFNAVAIV  255 (265)
Q Consensus       215 ls~~a~V~~E~~lK~~~~~--~~~~~n~~L--~~~g~~~~~~~~~  255 (265)
                      ++++.+++.|+.+++.+..  +....|.+.  ...|.++.+....
T Consensus       205 ~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~  249 (350)
T PTZ00343        205 GSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVL  249 (350)
T ss_pred             HHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999865411  222334443  4455555544433

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.42  E-value=7.2e-11  Score=107.58  Aligned_cols=183  Identities=11%  Similarity=0.146  Sum_probs=126.3

Q ss_pred             HHHhhhHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHHHHHHHHH
Q 024649           55 TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNL  134 (265)
Q Consensus        55 ~l~~s~~~ll~~~s~~~g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPa~ly~~~n~  134 (265)
                      -..+.+..++.|+.-++-.+   |.+..+.......+++.++    ++. +.  ..+...++++.......+++.++++.
T Consensus        11 ~~~~~~~~~~NK~~l~~~~~---P~~~~~~~~~~~~~~~~~~----~~~-~~--~~~~~~~~~~~~~~~~~g~~~~~~~~   80 (302)
T TIGR00817        11 YFLNVYFNIYNKKLLNVFPY---PYFKTLISLAVGSLYCLLS----WSS-GL--PKRLKISSALLKLLLPVAIVHTIGHV   80 (302)
T ss_pred             HHHHHHHHHHHHHHHhhCCh---hHHHHHHHHHHHHHHHHHH----HHh-CC--CCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            34455566666766554222   4445555544433222222    111 11  11112345666677778888889999


Q ss_pred             HHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCCCCccccchhhHHHHHHHHHH
Q 024649          135 LQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMAL  214 (265)
Q Consensus       135 L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~~~~~~~~~~~G~~~vl~a~~  214 (265)
                      +.+++++|.+++.++++..+.+++|++++++++|||+++.+|.++++.++|+.+....+     .+....|.++++++++
T Consensus        81 ~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~-----~~~~~~G~~~~l~a~~  155 (302)
T TIGR00817        81 TSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTE-----LSFNWAGFLSAMISNI  155 (302)
T ss_pred             HHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCc-----ccccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998753221     1234579999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHH
Q 024649          215 LSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVA  253 (265)
Q Consensus       215 ls~~a~V~~E~~lK~~~~~~~~~~n~~L~~~g~~~~~~~  253 (265)
                      ++++..++.|+..++++. +.+..+.+...+|.++.+..
T Consensus       156 ~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~p~  193 (302)
T TIGR00817       156 TFVSRNIFSKKAMTIKSL-DKTNLYAYISIMSLFLLSPP  193 (302)
T ss_pred             HHHHHHHHHHHhhccCCC-CcccHHHHHHHHHHHHHHHH
Confidence            999999999999873222 33344444455555444444

specificities overlap.

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.39  E-value=9e-11  Score=110.18  Aligned_cols=177  Identities=15%  Similarity=0.067  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHhhhHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHH
Q 024649           48 SVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAV  127 (265)
Q Consensus        48 ~~~l~lL~l~~s~~~ll~~~s~~~g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPa~  127 (265)
                      +..++++=+.+....++.|..-++|-.++.   ..+.+-.+-.++.+.+.+.. ++.    +......++++..+++.++
T Consensus        15 ~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~---~~~~R~~iA~l~Ll~~~~~~-~~~----~~~~~~~~~~~~~l~l~g~   86 (358)
T PLN00411         15 LTAMLATETSVVGISTLFKVATSKGLNIYP---FLGYSYLLASLLLLPSLFFT-NRS----RSLPPLSVSILSKIGLLGF   86 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCccH---HHHHHHHHHHHHHHHHHHHH-HHh----cccCcchHHHHHHHHHHHH
Confidence            444444445556666677766665544443   44555444322222222211 111    0111224667778888888


Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHH------hcCCCCHHHHHHHHHHHhhcccccccCCC------
Q 024649          128 LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRII------LKKKLSEIQWAAFILLCCGCTTAQLNSNS------  195 (265)
Q Consensus       128 ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~------L~~~ls~~qw~al~ll~~Gv~l~~~~~~~------  195 (265)
                      +.++.+.+.|++++|++++...++.++.+++|+++++++      +|||+++.||+|+++.++|+.++-.....      
T Consensus        87 ~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~  166 (358)
T PLN00411         87 LGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVAS  166 (358)
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccc
Confidence            777788899999999999999999999999999999999      69999999999999999999876532110      


Q ss_pred             -------------C-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 024649          196 -------------D-RVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPS  232 (265)
Q Consensus       196 -------------~-~~~~~~~~G~~~vl~a~~ls~~a~V~~E~~lK~~~~  232 (265)
                                   . ....+...|..+++++++++++..++.++..++.+.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~  217 (358)
T PLN00411        167 SPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPA  217 (358)
T ss_pred             ccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence                         0 011233669999999999999999999999887654

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.28  E-value=8.9e-10  Score=97.52  Aligned_cols=133  Identities=13%  Similarity=0.126  Sum_probs=104.5

Q ss_pred             hhhhhhhhH-HHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCCCC
Q 024649          118 EVIVYPIPA-VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSD  196 (265)
Q Consensus       118 ~~~~~~iPa-~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~~~  196 (265)
                      +...+.+.+ +...+.+.+.|++++++|++...++.++.+++|++++.+++|||++++||.++++.++|+.++..++.  
T Consensus        45 ~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~--  122 (260)
T TIGR00950        45 RLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGN--  122 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCc--
Confidence            334455555 46679999999999999999999999999999999999999999999999999999999988754331  


Q ss_pred             ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHH
Q 024649          197 RVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIV  255 (265)
Q Consensus       197 ~~~~~~~~G~~~vl~a~~ls~~a~V~~E~~lK~~~~~~~~~~n~~L~~~g~~~~~~~~~  255 (265)
                        .+....|..+.++++++++...++.++..++.+. +....+.+....+.++......
T Consensus       123 --~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~  178 (260)
T TIGR00950       123 --LSINPAGLLLGLGSGISFALGTVLYKRLVKKEGP-ELLQFTGWVLLLGALLLLPFAW  178 (260)
T ss_pred             --ccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCc-hHHHHHHHHHHHHHHHHHHHHH
Confidence              1245689999999999999999999999776553 3333443445555555444433

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.24  E-value=4.1e-09  Score=95.84  Aligned_cols=181  Identities=13%  Similarity=0.074  Sum_probs=128.9

Q ss_pred             HHHHHHHHHHhhhHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHH
Q 024649           48 SVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAV  127 (265)
Q Consensus        48 ~~~l~lL~l~~s~~~ll~~~s~~~g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPa~  127 (265)
                      .+.+++.++.|++..+.+|...++    .+|...++++-..-.++-+.+...  ++.      + ...+++.....+-++
T Consensus        10 ~~~~~~~~~iWg~~~~~~K~~~~~----~~p~~~~~~R~~~a~l~ll~~~~~--~~~------~-~~~~~~~~~~~~~g~   76 (292)
T PRK11272         10 FGALFALYIIWGSTYLVIRIGVES----WPPLMMAGVRFLIAGILLLAFLLL--RGH------P-LPTLRQWLNAALIGL   76 (292)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhcc----CCHHHHHHHHHHHHHHHHHHHHHH--hCC------C-CCcHHHHHHHHHHHH
Confidence            455677889999999999987653    347777887777754332222221  111      1 112344445555665


Q ss_pred             H-HHHHHHHHHHHH-HcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCCCCccccchhhH
Q 024649          128 L-YLVKNLLQYYIF-AYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQG  205 (265)
Q Consensus       128 l-y~~~n~L~~~al-~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~~~~~~~~~~~G  205 (265)
                      + ..+.+.+.+++. ++.+++...++..+.++++++++.+ +|||++++||.++++.++|+.++..++..    +....|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~----~~~~~G  151 (292)
T PRK11272         77 LLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNL----SGNPWG  151 (292)
T ss_pred             HHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCccc----ccchHH
Confidence            4 457888999999 9999999999999999999999985 79999999999999999999887543221    234579


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 024649          206 WIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAF  249 (265)
Q Consensus       206 ~~~vl~a~~ls~~a~V~~E~~lK~~~~~~~~~~n~~L~~~g~~~  249 (265)
                      .++.+++++++++.+++.++.-++ +  +......++.+.+.+.
T Consensus       152 ~l~~l~a~~~~a~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~  192 (292)
T PRK11272        152 AILILIASASWAFGSVWSSRLPLP-V--GMMAGAAEMLAAGVVL  192 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCC-c--chHHHHHHHHHHHHHH
Confidence            999999999999999999887432 2  3444444444444433

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.21  E-value=2.8e-09  Score=97.21  Aligned_cols=186  Identities=16%  Similarity=0.170  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhh
Q 024649           46 RKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIP  125 (265)
Q Consensus        46 ~~~~~l~lL~l~~s~~~ll~~~s~~~g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iP  125 (265)
                      +..+..++-.+.++...+.+|+..     ++.+...++.+-..-.++-+.+...+ ++..  ...+...++++.......
T Consensus         8 ~g~~~~l~a~~~wg~~~~~~k~~~-----~~~~~~~~~~R~~~a~~~l~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~   79 (296)
T PRK15430          8 QGVLLALAAYFIWGIAPAYFKLIY-----YVPADEILTHRVIWSFFFMVVLMSIC-RQWS--YLKTLIQTPQKIFMLAVS   79 (296)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHHHHHHHHH-ccHH--HHHHHHcCHHHHHHHHHH
Confidence            344555566678999999999752     24577777777777543222222211 1100  000001134444445566


Q ss_pred             HHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCCCCccccchhhH
Q 024649          126 AVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQG  205 (265)
Q Consensus       126 a~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~~~~~~~~~~~G  205 (265)
                      ++++++++.+.|++++++|++..+++..+.++++++++++++|||++++||.++++.++|+.++-.+. ++    ..   
T Consensus        80 ~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~-~~----~~---  151 (296)
T PRK15430         80 AVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTF-GS----LP---  151 (296)
T ss_pred             HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHc-CC----cc---
Confidence            78889999999999999999999999999999999999999999999999999999999998874321 11    11   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 024649          206 WIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAF  249 (265)
Q Consensus       206 ~~~vl~a~~ls~~a~V~~E~~lK~~~~~~~~~~n~~L~~~g~~~  249 (265)
                       ...+++++++++..++.++..++.. .+....+.+...++.++
T Consensus       152 -~~~l~aa~~~a~~~i~~r~~~~~~~-~~~~~~~~~~~~~~~~~  193 (296)
T PRK15430        152 -IIALGLAFSFAFYGLVRKKIAVEAQ-TGMLIETMWLLPVAAIY  193 (296)
T ss_pred             -HHHHHHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHHHHHH
Confidence             3567788999999999888643222 23455555555555443

>TIGR00688 rarD rarD protein

Probab=99.19  E-value=2.9e-09  Score=94.70  Aligned_cols=165  Identities=15%  Similarity=0.101  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHhhhHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccc-ccchh-hhhhhhh
Q 024649           48 SVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLS-TTLDE-VIVYPIP  125 (265)
Q Consensus        48 ~~~l~lL~l~~s~~~ll~~~s~~~g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~iP  125 (265)
                      .+...+-.+.++...+..|+. .+    .++...++.+-+.-.++-+.+.....++..  ...+.. ..+++ .....+.
T Consensus         4 ~~~~i~a~~~wg~~~~~~k~~-~~----~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~   76 (256)
T TIGR00688         4 IIVSLLASFLFGYMYYYSKLL-KP----LPATDILGHRMIWSFPFMLLSVTLFRQWAA--LIERLKRIQKRPLILSLLLC   76 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-cc----CCHHHHHHHHHHHHHHHHHHHHHHHcchHH--HHHHHhCcccchHHHHHHHH
Confidence            344556667899999999973 21    568888999988753321211111111000  000111 11222 3457778


Q ss_pred             HHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCCCCccccchhhH
Q 024649          126 AVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQG  205 (265)
Q Consensus       126 a~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~~~~~~~~~~~G  205 (265)
                      +++..+.+.+.+++++++++++..++.++.++++++++++++|||++++||.++++.++|++++..+ .++    ..   
T Consensus        77 g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~-~~~----~~---  148 (256)
T TIGR00688        77 GLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVL-KGS----LP---  148 (256)
T ss_pred             HHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-cCC----ch---
Confidence            8889999999999999999999999999999999999999999999999999999999999877432 111    11   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhh
Q 024649          206 WIMAIVMALLSGFAGVYTEAIMK  228 (265)
Q Consensus       206 ~~~vl~a~~ls~~a~V~~E~~lK  228 (265)
                       .+.+++++++++..++.++.-+
T Consensus       149 -~~~l~aa~~~a~~~i~~~~~~~  170 (256)
T TIGR00688       149 -WEALVLAFSFTAYGLIRKALKN  170 (256)
T ss_pred             -HHHHHHHHHHHHHHHHHhhcCC
Confidence             3467889999999999888643

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.18  E-value=1.5e-08  Score=92.38  Aligned_cols=163  Identities=13%  Similarity=0.122  Sum_probs=115.6

Q ss_pred             HHHHHHHHHHhhhHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHH
Q 024649           48 SVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAV  127 (265)
Q Consensus        48 ~~~l~lL~l~~s~~~ll~~~s~~~g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPa~  127 (265)
                      .+..++..+.|+++.+.+|..-++    ..|...++++-.+-.++ +..+.   ++.      +.  .++....   -++
T Consensus         6 ~l~~l~~~~~Wg~~~~~~k~~~~~----~~p~~~~~~R~~~a~~~-l~~~~---~~~------~~--~~~~~~~---~g~   66 (299)
T PRK11453          6 GVLALLVVVVWGLNFVVIKVGLHN----MPPLMLAGLRFMLVAFP-AIFFV---ARP------KV--PLNLLLG---YGL   66 (299)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhc----CCHHHHHHHHHHHHHHH-HHHHh---cCC------CC--chHHHHH---HHH
Confidence            344566788999999999976542    45777777776653221 11111   111      10  1121111   122


Q ss_pred             -HHHHHHHHHHHHHHc-CChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCCCCccccchhhH
Q 024649          128 -LYLVKNLLQYYIFAY-VDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQG  205 (265)
Q Consensus       128 -ly~~~n~L~~~al~~-l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~~~~~~~~~~~G  205 (265)
                       ....+..+.|.++++ ++++...++.++.+++|.+++++++|||++++||.++++.++|+.++-.+..++  ......|
T Consensus        67 ~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~--~~~~~~G  144 (299)
T PRK11453         67 TISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNG--QHVAMLG  144 (299)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCC--cchhHHH
Confidence             334566677888887 789999999999999999999999999999999999999999998775332111  1224579


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCC
Q 024649          206 WIMAIVMALLSGFAGVYTEAIMKKRP  231 (265)
Q Consensus       206 ~~~vl~a~~ls~~a~V~~E~~lK~~~  231 (265)
                      ..+.+++++++++..++.++..++.+
T Consensus       145 ~~l~l~aal~~a~~~v~~~~~~~~~~  170 (299)
T PRK11453        145 FMLTLAAAFSWACGNIFNKKIMSHST  170 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            99999999999999999999866544

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.97  E-value=1.3e-07  Score=86.15  Aligned_cols=168  Identities=12%  Similarity=0.031  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHhhhHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHH
Q 024649           48 SVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAV  127 (265)
Q Consensus        48 ~~~l~lL~l~~s~~~ll~~~s~~~g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPa~  127 (265)
                      ++..++-++.|+++-+.+|..-++    +.|....+++-.+-.++ +..+.   ++      ++....++  .....-++
T Consensus         6 ~l~~l~a~~~Wg~~~~~~k~~~~~----~~P~~~~~~R~~~a~l~-l~~~~---~~------~~~~~~~~--~~~~~~~l   69 (295)
T PRK11689          6 TLIGLIAILLWSTMVGLIRGVSES----LGPVGGAAMIYSVSGLL-LLLTV---GF------PRLRQFPK--RYLLAGGL   69 (295)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHcc----CChHHHHHHHHHHHHHH-HHHHc---cc------cccccccH--HHHHHHhH
Confidence            455667778899999999987653    44666677665443221 11111   11      11111111  11222344


Q ss_pred             HHHHHHHHHHHHHH----cCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCCCCc------
Q 024649          128 LYLVKNLLQYYIFA----YVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDR------  197 (265)
Q Consensus       128 ly~~~n~L~~~al~----~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~~~~------  197 (265)
                      .+++++.+.|.++.    +++++...++..+.++++++++++++|||++++||.++++.++|+.++-.++.+.+      
T Consensus        70 ~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~  149 (295)
T PRK11689         70 LFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELIN  149 (295)
T ss_pred             HHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhh
Confidence            56677777887775    46888889999999999999999999999999999999999999988754322110      


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 024649          198 VLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRP  231 (265)
Q Consensus       198 ~~~~~~~G~~~vl~a~~ls~~a~V~~E~~lK~~~  231 (265)
                      .......|..+++++++++++..++.++..++.+
T Consensus       150 ~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~  183 (295)
T PRK11689        150 NIASNPLSYGLAFIGAFIWAAYCNVTRKYARGKN  183 (295)
T ss_pred             ccccChHHHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence            1112356999999999999999999999865543

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.88  E-value=1.5e-06  Score=77.09  Aligned_cols=170  Identities=16%  Similarity=0.140  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhh
Q 024649           46 RKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIP  125 (265)
Q Consensus        46 ~~~~~l~lL~l~~s~~~ll~~~s~~~g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iP  125 (265)
                      ...+..++..+.++......+....+   ...+....+..-.....+ ..... . ++..    .+.....+..+.....
T Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~-~-~~~~----~~~~~~~~~~~~~~~~   76 (292)
T COG0697           7 LGLLALLLWGLLWGLSFIALKLAVES---LDPFLFAAALRFLIAALL-LLPLL-L-LEPR----GLRPALRPWLLLLLLA   76 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcc---cCChHHHHHHHHHHHHHH-HHHHH-H-hhcc----cccccccchHHHHHHH
Confidence            34444455556777777777655543   122233333344443333 11111 1 1100    0111111122345556


Q ss_pred             HHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHH-HHhcCCCCHHHHHHHHHHHhhcccccccCCCCccccchhh
Q 024649          126 AVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYR-IILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQ  204 (265)
Q Consensus       126 a~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~-~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~~~~~~~~~~~  204 (265)
                      .+.+...+.+.|.++++++++...++..+.+++++++++ +++|||+++.+|.++++.+.|+.++...+..... . ...
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~-~-~~~  154 (292)
T COG0697          77 LLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGI-L-SLL  154 (292)
T ss_pred             HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchh-H-HHH
Confidence            678889999999999999999999999999999999997 6679999999999999999999998765443211 1 578


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Q 024649          205 GWIMAIVMALLSGFAGVYTEAIM  227 (265)
Q Consensus       205 G~~~vl~a~~ls~~a~V~~E~~l  227 (265)
                      |..+.++++++.+++.++.+++.
T Consensus       155 g~~~~l~a~~~~a~~~~~~~~~~  177 (292)
T COG0697         155 GLLLALAAALLWALYTALVKRLS  177 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999987

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.76  E-value=7.3e-07  Score=81.44  Aligned_cols=171  Identities=18%  Similarity=0.242  Sum_probs=126.4

Q ss_pred             HHHHHHHHHHhhhHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHH
Q 024649           48 SVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAV  127 (265)
Q Consensus        48 ~~~l~lL~l~~s~~~ll~~~s~~~g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPa~  127 (265)
                      ..+.+..++.....++.-|+--+  .|+|+....+.+.+.+-.++.+.++    |+.+..+.+  ..+++...++..+++
T Consensus        14 l~sa~~Y~~sS~lm~vvNK~vls--~y~f~~~l~l~~~Q~l~s~~~v~~l----k~~~lv~~~--~l~~~~~kk~~P~~~   85 (314)
T KOG1444|consen   14 LLSALFYCLSSILMTVVNKIVLS--SYNFPMGLLLMLLQSLASVLVVLVL----KRLGLVNFR--PLDLRTAKKWFPVSL   85 (314)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHHHHHHHH----HHhceeecC--CcChHHHHHHccHHH
Confidence            44445555555555666665544  4667766555555555433333333    333322222  235677788899999


Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCCCCccccchhhHHH
Q 024649          128 LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWI  207 (265)
Q Consensus       128 ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~~~~~~~~~~~G~~  207 (265)
                      +|...-.---.+++|++.++|-++.+..|+.||+.-+.++|++.+..-|.++++..+|.......+.+.     ...|+.
T Consensus        86 lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf-----~~~gY~  160 (314)
T KOG1444|consen   86 LFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSF-----NLRGYS  160 (314)
T ss_pred             HHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcccccee-----cchhHH
Confidence            998888888888999999999999999999999999999999999999999999999987665544322     234999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCC
Q 024649          208 MAIVMALLSGFAGVYTEAIMKKRP  231 (265)
Q Consensus       208 ~vl~a~~ls~~a~V~~E~~lK~~~  231 (265)
                      .++..+++.+.-.+|.|+.++..+
T Consensus       161 w~~~n~~~~a~~~v~~kk~vd~~~  184 (314)
T KOG1444|consen  161 WALANCLTTAAFVVYVKKSVDSAN  184 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcccc
Confidence            999999999999999999988765

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.74  E-value=2.2e-06  Score=77.44  Aligned_cols=104  Identities=17%  Similarity=0.169  Sum_probs=86.6

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCCCCcccc
Q 024649          121 VYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQ  200 (265)
Q Consensus       121 ~~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~~~~~~~  200 (265)
                      ....-++.....+.+.+.++++.|++...++..+.++++++++++++|||+++.||.|+.+.+.|+.++..++..    .
T Consensus        65 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~----~  140 (281)
T TIGR03340        65 LLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFA----Q  140 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccccc----c
Confidence            344445678899999999999999999999999999999999999999999999999999999999887543221    1


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 024649          201 TPLQGWIMAIVMALLSGFAGVYTEAIMK  228 (265)
Q Consensus       201 ~~~~G~~~vl~a~~ls~~a~V~~E~~lK  228 (265)
                      ....|..+.+++++++++..++.++..+
T Consensus       141 ~~~~g~~~~l~aal~~a~~~i~~k~~~~  168 (281)
T TIGR03340       141 HRRKAYAWALAAALGTAIYSLSDKAAAL  168 (281)
T ss_pred             cchhHHHHHHHHHHHHHHhhhhcccccc
Confidence            2235777889999999999998776643

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=98.72  E-value=3.7e-07  Score=82.90  Aligned_cols=182  Identities=16%  Similarity=0.199  Sum_probs=136.2

Q ss_pred             cchhhHHHHHHHHHHHHhhhHHHHHHHhhcC--CCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchh
Q 024649           41 LANWKRKSVVTLALTVLTSSQAILIVWSKRA--GKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDE  118 (265)
Q Consensus        41 ~~~~~~~~~~l~lL~l~~s~~~ll~~~s~~~--g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~~~~~~~~~~~  118 (265)
                      .+.....-+..+++++.|-.-+|..+|++++  .+++| |-.++-+-..+|+.++......  .++.. .+.|...+|++
T Consensus         7 ~~~~~~~rV~~L~lVl~yY~~Si~Ltf~~~~~~~~f~f-PLf~ts~h~~v~flfa~~~~~l--~~~~~-~r~r~~~sw~~   82 (349)
T KOG1443|consen    7 DNQFLMNRVLTLALVLLYYFLSIGLTFYFKWLTKNFHF-PLFVTSLHLAVKFLFAALSRRL--YQCSV-PRARVVLSWRD   82 (349)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcCC-chHHHHHHHHHHHHHHHHHHHH--HhccC-CccccCCcHHH
Confidence            3344445555666778888888888988763  33332 3445556667777776654321  12111 12345568888


Q ss_pred             hh-hhhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCCCCc
Q 024649          119 VI-VYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDR  197 (265)
Q Consensus       119 ~~-~~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~~~~  197 (265)
                      .+ +.+..|+.-+.+=.|.++++.|++.+.|-++.++.|+|.-+|+.++-=||+++.=..-..+..+|+.+....+..  
T Consensus        83 ~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTq--  160 (349)
T KOG1443|consen   83 YLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQ--  160 (349)
T ss_pred             HHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccc--
Confidence            76 455556777789999999999999999999999999999999988766888888888888888999888776542  


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 024649          198 VLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRP  231 (265)
Q Consensus       198 ~~~~~~~G~~~vl~a~~ls~~a~V~~E~~lK~~~  231 (265)
                         =.+.|++++.++++++|+--.+.++++++++
T Consensus       161 ---f~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~  191 (349)
T KOG1443|consen  161 ---FNIEGFFLVLAASLLSGLRWAFTQMLLRNQP  191 (349)
T ss_pred             ---eeehhHHHHHHHHHhhhhhHHHHHHHHhcCc
Confidence               3467999999999999999999999999876

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.67  E-value=9.1e-06  Score=73.97  Aligned_cols=164  Identities=12%  Similarity=-0.022  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhh
Q 024649           46 RKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIP  125 (265)
Q Consensus        46 ~~~~~l~lL~l~~s~~~ll~~~s~~~g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iP  125 (265)
                      +..+.+++-++.++.....+|+.-.+    +.+...++.+-++-.++.+.+. +. ++      .  ...+++......-
T Consensus        12 ~~~~~~~la~~~~~~~~~~~K~~~~~----~~~~~~~~~R~~~a~l~l~~~~-~~-~~------~--~~~~~~~~~~~~~   77 (293)
T PRK10532         12 LPILLLLIAMASIQSGASLAKSLFPL----VGAPGVTALRLALGTLILIAIF-KP-WR------L--RFAKEQRLPLLFY   77 (293)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHH----cCHHHHHHHHHHHHHHHHHHHH-hH-Hh------c--cCCHHHHHHHHHH
Confidence            34455555566667777788876542    4466677777766533322222 11 11      1  1123444455566


Q ss_pred             HHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCCCCccccchhhH
Q 024649          126 AVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQG  205 (265)
Q Consensus       126 a~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~~~~~~~~~~~G  205 (265)
                      ++++.+.+.+.|++++|+|++...++..+.++++++++.    |+.++.+|  +.+.++|+.++-....+.  ......|
T Consensus        78 g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~~~~~--~~i~~~Gv~li~~~~~~~--~~~~~~G  149 (293)
T PRK10532         78 GVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPVDFVW--VVLAVLGLWFLLPLGQDV--SHVDLTG  149 (293)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChHHHHH--HHHHHHHHheeeecCCCc--ccCChHH
Confidence            677888899999999999999999999999999998873    55555555  556688887754222111  1234579


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCC
Q 024649          206 WIMAIVMALLSGFAGVYTEAIMKKRP  231 (265)
Q Consensus       206 ~~~vl~a~~ls~~a~V~~E~~lK~~~  231 (265)
                      .++.+++++++++..++.++..++.+
T Consensus       150 ~ll~l~aa~~~a~~~v~~r~~~~~~~  175 (293)
T PRK10532        150 AALALGAGACWAIYILSGQRAGAEHG  175 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            99999999999999999999866543

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=98.60  E-value=5.4e-07  Score=70.03  Aligned_cols=121  Identities=17%  Similarity=0.131  Sum_probs=88.6

Q ss_pred             hhhHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHHH-HHHHHHHH
Q 024649           58 TSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVL-YLVKNLLQ  136 (265)
Q Consensus        58 ~s~~~ll~~~s~~~g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPa~l-y~~~n~L~  136 (265)
                      ++...++.|...++    +++...++...+.-.+ .+.+.... ++.     +....++++.....+.+++ ..+.+.+.
T Consensus         3 ~a~~~~~~k~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (126)
T PF00892_consen    3 WAIYSVFSKKLLKK----ISPLSITFWRFLIAGI-LLILLLIL-GRK-----PFKNLSPRQWLWLLFLGLLGTALAYLLY   71 (126)
T ss_pred             eeeHHHHHHHHhcc----CCHHHHHHHHHHHHHH-HHHHHHhh-ccc-----cccCCChhhhhhhhHhhccceehHHHHH
Confidence            44555666655443    4466667777776543 22222211 111     1123345566667777776 58999999


Q ss_pred             HHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccc
Q 024649          137 YYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA  189 (265)
Q Consensus       137 ~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~  189 (265)
                      +.++++.+++..+++.++.++++.+++++++||++++.||.|+++.+.|+.++
T Consensus        72 ~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~  124 (126)
T PF00892_consen   72 FYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI  124 (126)
T ss_pred             HHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998764

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.56  E-value=3.1e-05  Score=70.46  Aligned_cols=171  Identities=18%  Similarity=0.274  Sum_probs=138.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHH
Q 024649           77 SVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNI  156 (265)
Q Consensus        77 ~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~ki  156 (265)
                      ++.-.+++.-+..++.+..++.. ++.+        ....+-++.|...++.-.+..-+.|-++.|++=+|.-+...+|.
T Consensus        50 ~~~fL~~~q~l~~~~~s~~~l~~-~k~~--------~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKm  120 (327)
T KOG1581|consen   50 HSLFLVFCQRLVALLVSYAMLKW-WKKE--------LSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKM  120 (327)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhc-cccc--------CCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhh
Confidence            34556677777766666554431 1111        11223467899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCCCCc----cccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 024649          157 ISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDR----VLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPS  232 (265)
Q Consensus       157 i~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~~~~----~~~~~~~G~~~vl~a~~ls~~a~V~~E~~lK~~~~  232 (265)
                      +-+.+...++-|+|++..+.+..++...|+.+..+.+.+++    ...+...|+.++...-+.=|+.+....+++|+.+.
T Consensus       121 IPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~  200 (327)
T KOG1581|consen  121 IPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYKV  200 (327)
T ss_pred             hHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCc
Confidence            99999999999999999999999999999998876654332    22578899999999999999999999999997775


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHhc
Q 024649          233 RNINVQNFWLYVFGMAFNAVAIVIQ  257 (265)
Q Consensus       233 ~~~~~~n~~L~~~g~~~~~~~~~~~  257 (265)
                       +.|.+..-+-+|+.+.|+...+.+
T Consensus       201 -s~~~mM~~vNLf~~i~~~~~li~q  224 (327)
T KOG1581|consen  201 -SSLHMMFGVNLFSAILNGTYLILQ  224 (327)
T ss_pred             -cHhHHHHHHHHHHHHHHHHhhhcC
Confidence             888888888999999998886543

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.49  E-value=9.1e-07  Score=69.46  Aligned_cols=71  Identities=24%  Similarity=0.345  Sum_probs=63.0

Q ss_pred             hhhHHHH-HHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCC
Q 024649          123 PIPAVLY-LVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSN  194 (265)
Q Consensus       123 ~iPa~ly-~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~  194 (265)
                      ..-+++. ..++.+.++++++.| +...++.++.++++++++++++|||+++.+|.++++.++|++++..++.
T Consensus        38 ~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~  109 (113)
T PF13536_consen   38 ILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDL  109 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence            3335544 589999999999999 5888999999999999999999999999999999999999999987654

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=98.47  E-value=1.6e-08  Score=89.71  Aligned_cols=133  Identities=19%  Similarity=0.242  Sum_probs=117.8

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCC--CCc-
Q 024649          121 VYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSN--SDR-  197 (265)
Q Consensus       121 ~~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~--~~~-  197 (265)
                      .|.+-|+.+.-.|.+.--|.||.+-...+++-...++..-+++|++||.|..+.|..|.+++..|++++-..+.  +|+ 
T Consensus        80 hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~a  159 (336)
T KOG2766|consen   80 HYILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRA  159 (336)
T ss_pred             HhhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeecccccc
Confidence            48888999999999999999999999999999999999999999999999999999999999999988765542  332 


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHh
Q 024649          198 VLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVI  256 (265)
Q Consensus       198 ~~~~~~~G~~~vl~a~~ls~~a~V~~E~~lK~~~~~~~~~~n~~L~~~g~~~~~~~~~~  256 (265)
                      ...++..|-+++++++.+.|.+++-+|.+.|+-   +..+...++++||.++.++-...
T Consensus       160 ggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~---d~~elm~~lgLfGaIIsaIQ~i~  215 (336)
T KOG2766|consen  160 GGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNA---DRVELMGFLGLFGAIISAIQFIF  215 (336)
T ss_pred             CCCCCccCcEEEEecceeeeeccccHHHHHhcC---cHHHHHHHHHHHHHHHHHHHHhh
Confidence            357899999999999999999999999999984   56677789999999999987443

>COG2510 Predicted membrane protein [Function unknown]

Probab=98.38  E-value=7.3e-06  Score=65.83  Aligned_cols=131  Identities=14%  Similarity=0.117  Sum_probs=96.3

Q ss_pred             HHHHHHhhhHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHHHHHH
Q 024649           52 LALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLV  131 (265)
Q Consensus        52 ~lL~l~~s~~~ll~~~s~~~g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPa~ly~~  131 (265)
                      ++-.+.++..|+.-|.--++-+    |..+-+++-+.-++++..+.+..-+.+.   ..  ..++|.+....+.++.-.+
T Consensus         9 LLsA~fa~L~~iF~KIGl~~vd----p~~At~IRtiVi~~~l~~v~~~~g~~~~---~~--~~~~k~~lflilSGla~gl   79 (140)
T COG2510           9 LLSALFAGLTPIFAKIGLEGVD----PDFATTIRTIVILIFLLIVLLVTGNWQA---GG--EIGPKSWLFLILSGLAGGL   79 (140)
T ss_pred             HHHHHHHHHHHHHHHHhccccC----ccHHHHHHHHHHHHHHHHHHHhcCceec---cc--ccCcceehhhhHHHHHHHH
Confidence            3445667778888886544333    5555566666655555555542211111   11  1355666777777788889


Q ss_pred             HHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccc
Q 024649          132 KNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL  191 (265)
Q Consensus       132 ~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~  191 (265)
                      .-.++|.|++.=+++-..=+..+.+.++++|++++||||+|..||+|+++.++|..++..
T Consensus        80 swl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~  139 (140)
T COG2510          80 SWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL  139 (140)
T ss_pred             HHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence            999999999999988888889999999999999999999999999999999999988753

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=98.35  E-value=3.6e-06  Score=77.77  Aligned_cols=108  Identities=19%  Similarity=0.286  Sum_probs=97.5

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCCCCcc
Q 024649          119 VIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRV  198 (265)
Q Consensus       119 ~~~~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~~~~~  198 (265)
                      +....-.|+.+++...+.+.++++++.+.+|+...+.|++|.++++++.+|+.++.-|++++....|+++....+.+   
T Consensus        83 ~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~---  159 (316)
T KOG1441|consen   83 LRTLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELS---  159 (316)
T ss_pred             hHHHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeecccc---
Confidence            44667778899999999999999999999999999999999999999999999999999999999999988765432   


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 024649          199 LQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRP  231 (265)
Q Consensus       199 ~~~~~~G~~~vl~a~~ls~~a~V~~E~~lK~~~  231 (265)
                        -...|+....++.+..++..++.|+++++++
T Consensus       160 --fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~  190 (316)
T KOG1441|consen  160 --FNLFGFISAMISNLAFALRNILSKKLLTSKG  190 (316)
T ss_pred             --ccHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence              3578999999999999999999999997544

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.34  E-value=2.1e-05  Score=64.05  Aligned_cols=135  Identities=11%  Similarity=0.128  Sum_probs=93.8

Q ss_pred             HHHHhhhHHHHHHHhhcC---CCccchHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCCCCCccc-----ccchhhhhhhh
Q 024649           54 LTVLTSSQAILIVWSKRA---GKYEYSVTTANFLVETLKCALSLAAL-ARIWNHEGVTDDNRLS-----TTLDEVIVYPI  124 (265)
Q Consensus        54 L~l~~s~~~ll~~~s~~~---g~~~y~~st~v~l~E~lKl~is~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~i  124 (265)
                      =.+..+...+++|...++   .++..++....+..-..-.++.+... ..+..+.. .......     ..++.......
T Consensus         8 s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   86 (153)
T PF03151_consen    8 SSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLS-SFFSEIFGEELSSDPNFIFLLIL   86 (153)
T ss_pred             HHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hHHHHhhhhhhcchHHHHHHHHH
Confidence            344556666666643322   33456666666666666555544432 22211100 0000000     02244567778


Q ss_pred             hHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccc
Q 024649          125 PAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA  189 (265)
Q Consensus       125 Pa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~  189 (265)
                      .+++....|...|..+.+.+|.|++++.+.|.+.+.+++++++++++|..|+.|+++.++|..+-
T Consensus        87 ~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Y  151 (153)
T PF03151_consen   87 SGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLY  151 (153)
T ss_pred             HHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhee
Confidence            88899999999999999999999999999999999999999999999999999999999998754

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=98.25  E-value=2.2e-05  Score=73.23  Aligned_cols=121  Identities=19%  Similarity=0.236  Sum_probs=101.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCC---CCccc
Q 024649          123 PIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSN---SDRVL  199 (265)
Q Consensus       123 ~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~---~~~~~  199 (265)
                      ..-+.+.++.|...+.++.+...+...+++.+.=+||-.++.++.++|+|..+.+++++.+.|++++..+++   ++.+.
T Consensus       163 l~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a  242 (416)
T KOG2765|consen  163 LFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPA  242 (416)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCc
Confidence            344568889999999999999999999999999999999999999999999999999999999999987754   22334


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCChHHHHHHHHHHH
Q 024649          200 QTPLQGWIMAIVMALLSGFAGVYTEAIMKKRP-SRNINVQNFWLYVFG  246 (265)
Q Consensus       200 ~~~~~G~~~vl~a~~ls~~a~V~~E~~lK~~~-~~~~~~~n~~L~~~g  246 (265)
                      .+++.|-++.++++++.|+..+..++-..+++ .+++-   ++.++.|
T Consensus       243 ~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~---lffGfvG  287 (416)
T KOG2765|consen  243 SRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQ---LFFGFVG  287 (416)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHH---HHHHHHH
Confidence            67899999999999999999999888777664 34443   3444444

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.20  E-value=0.00036  Score=63.65  Aligned_cols=105  Identities=11%  Similarity=0.140  Sum_probs=88.2

Q ss_pred             hhhhHHHHHHHHHHHHHHHHcCChhHHHHHhh-hHHHHHHHHHHHHhcCCCCHHH----HHHHHHHHhhcccccccCCCC
Q 024649          122 YPIPAVLYLVKNLLQYYIFAYVDAPGYQILKN-LNIISTGVLYRIILKKKLSEIQ----WAAFILLCCGCTTAQLNSNSD  196 (265)
Q Consensus       122 ~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q-~kii~TAl~s~~~L~~~ls~~q----w~al~ll~~Gv~l~~~~~~~~  196 (265)
                      -.+.+++..+.|..++.+.+++..++...+.+ ..+++..+++.+++||+.++.+    +.|+++.++|+.++...+.++
T Consensus        62 g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~  141 (290)
T TIGR00776        62 GLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKS  141 (290)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccc
Confidence            44455679999999999999999999988888 8999999999999999999999    999999999998886554221


Q ss_pred             cc-c--cchhhHHHHHHHHHHHHHHHHHHHHHH
Q 024649          197 RV-L--QTPLQGWIMAIVMALLSGFAGVYTEAI  226 (265)
Q Consensus       197 ~~-~--~~~~~G~~~vl~a~~ls~~a~V~~E~~  226 (265)
                      .. .  .+...|++..+++++..++..+..+..
T Consensus       142 ~~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~  174 (290)
T TIGR00776       142 AGIKSEFNFKKGILLLLMSTIGYLVYVVVAKAF  174 (290)
T ss_pred             cccccccchhhHHHHHHHHHHHHHHHHHHHHHc
Confidence            11 0  233569999999999999999999875

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.11  E-value=2.1e-05  Score=61.96  Aligned_cols=69  Identities=10%  Similarity=0.091  Sum_probs=62.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhccccc
Q 024649          122 YPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ  190 (265)
Q Consensus       122 ~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~  190 (265)
                      +.+--++|.+...+...+++.+|.+....+.++.++.+++++++++|||+++.||.++.+.++|++++.
T Consensus        40 ~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         40 LGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            333336789999999999999999988888889999999999999999999999999999999998764

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=98.03  E-value=0.00044  Score=60.98  Aligned_cols=132  Identities=14%  Similarity=-0.039  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhh
Q 024649           46 RKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIP  125 (265)
Q Consensus        46 ~~~~~l~lL~l~~s~~~ll~~~s~~~g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iP  125 (265)
                      ...+..++-.+.++...+..|....+.+  ..+.+.....-..-.++.+....   ..+.   ..  ..+++++.....-
T Consensus       128 ~G~~~~l~a~~~~a~~~~~~k~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~---~~~~---~~--~~~~~~~~~~~~~  197 (260)
T TIGR00950       128 AGLLLGLGSGISFALGTVLYKRLVKKEG--PELLQFTGWVLLLGALLLLPFAW---FLGP---NP--QALSLQWGALLYL  197 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHhhcCC--chHHHHHHHHHHHHHHHHHHHHH---hcCC---CC--CcchHHHHHHHHH
Confidence            4455555666778888888886554222  11111111111211111111111   1111   11  1133444445555


Q ss_pred             HHH-HHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcc
Q 024649          126 AVL-YLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCT  187 (265)
Q Consensus       126 a~l-y~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~  187 (265)
                      +++ ..+...+.+.++++.++++.+++..+.++++++++++++||++++.||.|..+.++|+.
T Consensus       198 ~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~  260 (260)
T TIGR00950       198 GLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL  260 (260)
T ss_pred             HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence            554 56888899999999999999999999999999999999999999999999999998863

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=98.03  E-value=3.2e-06  Score=76.00  Aligned_cols=113  Identities=22%  Similarity=0.365  Sum_probs=98.0

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHc-CChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCCCCc-
Q 024649          120 IVYPIPAVLYLVKNLLQYYIFAY-VDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDR-  197 (265)
Q Consensus       120 ~~~~iPa~ly~~~n~L~~~al~~-l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~~~~-  197 (265)
                      ..|++--.++++-|...++++.+ +|-+..-++++..++.|.+++++++|||.|.+|..+.+++++|+.+..+.++.|- 
T Consensus        65 k~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~  144 (330)
T KOG1583|consen   65 KDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGR  144 (330)
T ss_pred             hhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchh
Confidence            46888888899999999999977 9999999999999999999999999999999999999999999999876543221 


Q ss_pred             --------c-----ccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 024649          198 --------V-----LQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPS  232 (265)
Q Consensus       198 --------~-----~~~~~~G~~~vl~a~~ls~~a~V~~E~~lK~~~~  232 (265)
                              .     ...-.+|+.+...+.++|+.-|+|.|...|+++.
T Consensus       145 ~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGK  192 (330)
T KOG1583|consen  145 SKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGK  192 (330)
T ss_pred             hhhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence                    0     1123579999999999999999999999999875

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=97.96  E-value=4.6e-05  Score=67.38  Aligned_cols=135  Identities=14%  Similarity=0.181  Sum_probs=108.6

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCC--CC
Q 024649          119 VIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSN--SD  196 (265)
Q Consensus       119 ~~~~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~--~~  196 (265)
                      .+.|+..++-|...+.-.+-+++++|=+|-.+-.+.|++-..++.+.+.+|+.+|++..+.++.++|+++.-..+.  +.
T Consensus        85 ~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g  164 (337)
T KOG1580|consen   85 TKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGG  164 (337)
T ss_pred             chHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCC
Confidence            4689999999999999999999999999999999999999999999999999999999999999999999877643  22


Q ss_pred             ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHH
Q 024649          197 RVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAI  254 (265)
Q Consensus       197 ~~~~~~~~G~~~vl~a~~ls~~a~V~~E~~lK~~~~~~~~~~n~~L~~~g~~~~~~~~  254 (265)
                      ....+..+|-++.+++-..-|+.++..|++-+.+.. +-..+...+.+|+.+....++
T Consensus       165 ~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~-~g~~MM~~~NlwStL~Lg~g~  221 (337)
T KOG1580|consen  165 AEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQR-TGTSMMFYTNLWSTLYLGAGL  221 (337)
T ss_pred             CcccccchHHHHHHHHHHhcccchhHHHHHHHhhcc-CchhhHHHHHHHHHHHhhhhh
Confidence            233566788899999999999999999999776543 222222233445555444444

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.82  E-value=0.00016  Score=56.53  Aligned_cols=73  Identities=12%  Similarity=0.196  Sum_probs=64.9

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHcCChh-HHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhccccccc
Q 024649          120 IVYPIPAVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (265)
Q Consensus       120 ~~~~iPa~ly~~~n~L~~~al~~l~~~-t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~  192 (265)
                      ....+..++|.+...+...+++.+|.+ .|.+-....++.|++.+++++||++++.||+++.+.++|++...+.
T Consensus        30 ~~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l~  103 (105)
T PRK11431         30 TPSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKLS  103 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcc
Confidence            344555779999999999999999977 7788888999999999999999999999999999999999887543

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.79  E-value=0.00016  Score=56.88  Aligned_cols=72  Identities=17%  Similarity=0.196  Sum_probs=64.5

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHcCChh-HHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhccccc
Q 024649          119 VIVYPIPAVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ  190 (265)
Q Consensus       119 ~~~~~iPa~ly~~~n~L~~~al~~l~~~-t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~  190 (265)
                      .....+.-++|.+...+...+++++|.+ .|.+-....++.|++.+++++||++++.||.++.+.+.|++...
T Consensus        35 ~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk  107 (109)
T PRK10650         35 KIYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK  107 (109)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            3445666789999999999999999987 78888889999999999999999999999999999999998764

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=97.77  E-value=0.00027  Score=62.10  Aligned_cols=194  Identities=16%  Similarity=0.230  Sum_probs=130.1

Q ss_pred             HHHhhhHHHHHHHhhc--CCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHHHHHHH
Q 024649           55 TVLTSSQAILIVWSKR--AGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVK  132 (265)
Q Consensus        55 ~l~~s~~~ll~~~s~~--~g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPa~ly~~~  132 (265)
                      .+.++..+|+|...+.  -....|+..-+++..+.+-+.+.++++.+. +   .. .-|    .++..++..|+++..+-
T Consensus        11 ~lsYc~sSIlmTltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l-~---~~-~fR----~t~aK~WfpiSfLLv~M   81 (309)
T COG5070          11 SLSYCFSSILMTLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFL-R---LV-EFR----LTKAKKWFPISFLLVVM   81 (309)
T ss_pred             HHHHHHHHHHHHHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHH-h---Hh-hee----hhhhhhhcCHHHHHHHH
Confidence            4456677777776654  233457777777778887777777666432 1   10 011    34455677888777665


Q ss_pred             HHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCCCCcc--ccchhhHHHHHH
Q 024649          133 NLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRV--LQTPLQGWIMAI  210 (265)
Q Consensus       133 n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~~~~~--~~~~~~G~~~vl  210 (265)
                      -.-.--+++|++.+.|.++.++.|+..|..-+.++|.|.+.....+..+++..-.+...++.....  .+..-.|++.+.
T Consensus        82 Iyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN~GY~Wm~  161 (309)
T COG5070          82 IYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYLWMF  161 (309)
T ss_pred             HHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccCCceEEEe
Confidence            555556789999999999999999999999999999999999999999888777665544432111  123446888888


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCC---CChHHHHHHHHHHHHHHHHHH-HHhcChhh
Q 024649          211 VMALLSGFAGVYTEAIMKKRPS---RNINVQNFWLYVFGMAFNAVA-IVIQDFDA  261 (265)
Q Consensus       211 ~a~~ls~~a~V~~E~~lK~~~~---~~~~~~n~~L~~~g~~~~~~~-~~~~d~~~  261 (265)
                      .-|+.++.--...++..|-.+.   +..+..|    +.+.++.+.. ++.+||++
T Consensus       162 ~NclssaafVL~mrkri~ltNf~d~dtmfYnN----llslPiL~~~s~~~edws~  212 (309)
T COG5070         162 TNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNN----LLSLPILLSFSFLFEDWSP  212 (309)
T ss_pred             hhhHhHHHHHHHHHHhhcccccchhhHHHHhh----hHHHHHHHHHHHHhccCCc
Confidence            8888887766666666553321   1233333    4455655554 45678774

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=97.75  E-value=0.00099  Score=62.40  Aligned_cols=70  Identities=14%  Similarity=0.195  Sum_probs=64.5

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhccccc
Q 024649          121 VYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ  190 (265)
Q Consensus       121 ~~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~  190 (265)
                      .....++.|.++|.+.|+++..++|.++++....|++++.+++++++++++|+.|++|.++.+.|+.+.+
T Consensus       278 ~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs  347 (350)
T PTZ00343        278 KIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS  347 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence            3444567999999999999999999999999999999999999999999999999999999999997754

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.75  E-value=0.00022  Score=57.04  Aligned_cols=73  Identities=11%  Similarity=0.230  Sum_probs=64.9

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHcCChh-HHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccC
Q 024649          121 VYPIPAVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS  193 (265)
Q Consensus       121 ~~~iPa~ly~~~n~L~~~al~~l~~~-t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~  193 (265)
                      ...+.-++|.+...+...+++++|.+ .|.+.....++.+++.+++++||++++.||+++.+.++|++.+...+
T Consensus        32 ~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~  105 (120)
T PRK10452         32 GFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT  105 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence            34566789999999999999999988 55666689999999999999999999999999999999999887654

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.72  E-value=0.00021  Score=55.81  Aligned_cols=73  Identities=18%  Similarity=0.227  Sum_probs=65.2

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHcCChh-HHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhccccccc
Q 024649          120 IVYPIPAVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (265)
Q Consensus       120 ~~~~iPa~ly~~~n~L~~~al~~l~~~-t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~  192 (265)
                      ....+-.++|.+...+.-.+++++|.+ .|.+-...-++.|++.+++++||++++.||+++.++++|++...+.
T Consensus        31 ~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~  104 (106)
T COG2076          31 WPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG  104 (106)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence            445666778999999999999999977 7888899999999999999999999999999999999999877543

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=97.68  E-value=0.0059  Score=55.53  Aligned_cols=123  Identities=20%  Similarity=0.256  Sum_probs=87.6

Q ss_pred             ccccchhhhhhhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccc
Q 024649          112 LSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL  191 (265)
Q Consensus       112 ~~~~~~~~~~~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~  191 (265)
                      ...+||....+.+-+++...|-.++-++..+=..--.++=+-..+++..++.++++|||+|+.||+++++..+|+....+
T Consensus        65 ~~~~p~~~~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~  144 (293)
T COG2962          65 LLKQPKTLLMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTW  144 (293)
T ss_pred             HHhCcHHHHHHHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence            45677888899999999999999999998875555556666678999999999999999999999999999999987655


Q ss_pred             cCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 024649          192 NSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYV  244 (265)
Q Consensus       192 ~~~~~~~~~~~~~G~~~vl~a~~ls~~a~V~~E~~lK~~~~~~~~~~n~~L~~  244 (265)
                      ...+     -++.    .+.-|+..|+.+...+++ |-....++-...+++..
T Consensus       145 ~~g~-----lpwv----al~la~sf~~Ygl~RK~~-~v~a~~g~~lE~l~l~p  187 (293)
T COG2962         145 LLGS-----LPWV----ALALALSFGLYGLLRKKL-KVDALTGLTLETLLLLP  187 (293)
T ss_pred             HcCC-----CcHH----HHHHHHHHHHHHHHHHhc-CCchHHhHHHHHHHHhH
Confidence            4322     1222    234455667777654443 43332344444444433

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.68  E-value=0.0003  Score=55.38  Aligned_cols=74  Identities=19%  Similarity=0.246  Sum_probs=64.5

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHcCChh-HHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccC
Q 024649          120 IVYPIPAVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS  193 (265)
Q Consensus       120 ~~~~iPa~ly~~~n~L~~~al~~l~~~-t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~  193 (265)
                      ......-++|.+...+...+++.+|.+ .|.+-....++.+++.+++++||++++.||.++.+.++|++.+.+.+
T Consensus        31 ~~~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~  105 (110)
T PRK09541         31 WPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS  105 (110)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            344455678999999999999999988 56666789999999999999999999999999999999999887643

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=97.65  E-value=0.00064  Score=61.89  Aligned_cols=70  Identities=10%  Similarity=0.078  Sum_probs=62.8

Q ss_pred             hhHH-HHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccC
Q 024649          124 IPAV-LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS  193 (265)
Q Consensus       124 iPa~-ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~  193 (265)
                      ..++ .|...|.+.|.++++++|.++++....++++++++++++++|+++..||+|.++.++|+.+.+...
T Consensus       225 ~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k  295 (302)
T TIGR00817       225 VAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVK  295 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence            4444 677778888899999999999999999999999999999999999999999999999998877543

specificities overlap.

>PRK11689 aromatic amino acid exporter; Provisional

Probab=97.62  E-value=0.0027  Score=57.83  Aligned_cols=77  Identities=13%  Similarity=0.068  Sum_probs=64.9

Q ss_pred             chhhhhhhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhccccccc
Q 024649          116 LDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (265)
Q Consensus       116 ~~~~~~~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~  192 (265)
                      +..+.....-++.-.+...+.+++++++|++..+++....++++.++++++++|++++.||.|.++.+.|+.+....
T Consensus       212 ~~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~  288 (295)
T PRK11689        212 LPAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLA  288 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhh
Confidence            33343334444455678889999999999999999999999999999999999999999999999999999777543

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=97.61  E-value=0.00065  Score=58.77  Aligned_cols=109  Identities=16%  Similarity=0.170  Sum_probs=93.7

Q ss_pred             hhhhhh-HHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCCCCcc
Q 024649          120 IVYPIP-AVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRV  198 (265)
Q Consensus       120 ~~~~iP-a~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~~~~~  198 (265)
                      .++.-| +++.+..|+++-.++..++|+..+-+....-.|.=+++++.||.|+...+.++.++.+.|++++...+..   
T Consensus        53 ~~~taPF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~---  129 (290)
T KOG4314|consen   53 FIRTAPFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNE---  129 (290)
T ss_pred             eeeecceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccch---
Confidence            333444 3567899999999999999999999999999999999999999999999999999999999998754321   


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 024649          199 LQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRP  231 (265)
Q Consensus       199 ~~~~~~G~~~vl~a~~ls~~a~V~~E~~lK~~~  231 (265)
                      -.+.+.|+.+.+.+++.+++.-|.++..+.+-+
T Consensus       130 ~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn  162 (290)
T KOG4314|consen  130 HADEIIGIACAVGSAFMAALYKVLFKMFIGNAN  162 (290)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence            246889999999999999999999998887644

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=97.56  E-value=0.00087  Score=60.48  Aligned_cols=65  Identities=12%  Similarity=0.123  Sum_probs=58.8

Q ss_pred             hhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhccc
Q 024649          124 IPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTT  188 (265)
Q Consensus       124 iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l  188 (265)
                      ...+.-.+.+.+.++++++.|++....+.+..++++.+++++++||++++.||.|..+.++|+.+
T Consensus       216 ~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       216 LGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            33345567888999999999999999999999999999999999999999999999999999865

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=97.54  E-value=0.0051  Score=58.00  Aligned_cols=63  Identities=19%  Similarity=0.122  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccC
Q 024649          131 VKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS  193 (265)
Q Consensus       131 ~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~  193 (265)
                      +...+.++++++++|+...+...+.+++++++++++|+|++++.|++|.++.+.|+.+++...
T Consensus       268 lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~  330 (358)
T PLN00411        268 VYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGK  330 (358)
T ss_pred             HHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhh
Confidence            455677889999999999999999999999999999999999999999999999999987643

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=97.52  E-value=0.0061  Score=55.39  Aligned_cols=64  Identities=17%  Similarity=0.200  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhccccccc
Q 024649          129 YLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (265)
Q Consensus       129 y~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~  192 (265)
                      -.++..++++++++++++..+++..+.+++++++++++++|++++.||+|.++.++|++.....
T Consensus       219 t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~  282 (293)
T PRK10532        219 TALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLT  282 (293)
T ss_pred             HHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence            3467778999999999999999999999999999999999999999999999999988876543

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=97.38  E-value=0.003  Score=57.61  Aligned_cols=74  Identities=15%  Similarity=0.240  Sum_probs=66.2

Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHH-cCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHH----HHHHHHHhhcccccc
Q 024649          118 EVIVYPIPAVLYLVKNLLQYYIFA-YVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQW----AAFILLCCGCTTAQL  191 (265)
Q Consensus       118 ~~~~~~iPa~ly~~~n~L~~~al~-~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw----~al~ll~~Gv~l~~~  191 (265)
                      ..+...+.+++..++|.+++.+.+ ++++++..++.+..++.+.+++++++||+.++.|+    .|.++...|+.++.+
T Consensus       210 ~~~~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~  288 (290)
T TIGR00776       210 AILLNILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI  288 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence            344455578888899999999999 99999999999999999999999999999999999    999999999887654

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=97.35  E-value=0.0013  Score=53.16  Aligned_cols=67  Identities=12%  Similarity=0.022  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHH--HhcCCCCHHHHHHHHHHHhhcccccccC
Q 024649          127 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRI--ILKKKLSEIQWAAFILLCCGCTTAQLNS  193 (265)
Q Consensus       127 ~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~--~L~~~ls~~qw~al~ll~~Gv~l~~~~~  193 (265)
                      ++|.+...+..++++.+|.+...-+.......++++++.  ++||++|+.||+|+++.++|+.+++.++
T Consensus        56 ~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~  124 (129)
T PRK02971         56 AGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT  124 (129)
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence            588899999999999999998887777777777777775  8999999999999999999999987543

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=97.35  E-value=0.015  Score=53.01  Aligned_cols=63  Identities=13%  Similarity=0.102  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhccccccc
Q 024649          130 LVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (265)
Q Consensus       130 ~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~  192 (265)
                      .+...+.+.++++++++...++....+++++++++++++|+++..||.|.++.++|+.+...+
T Consensus       226 ~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~  288 (299)
T PRK11453        226 IVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG  288 (299)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence            367778888999999999999999999999999999999999999999999999999877554

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.32  E-value=0.00079  Score=60.82  Aligned_cols=142  Identities=18%  Similarity=0.236  Sum_probs=102.8

Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCCCC
Q 024649          117 DEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSD  196 (265)
Q Consensus       117 ~~~~~~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~~~  196 (265)
                      +++.++++-=++....||   +-++|++.+-|++=+++..+||-++++.+||+|=+..-..+..+.+.|.-+ +.+..+.
T Consensus       103 r~vlplsvVfi~mI~fnn---lcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~l-GvdqE~~  178 (347)
T KOG1442|consen  103 RQVLPLSVVFILMISFNN---LCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGL-GVDQEGS  178 (347)
T ss_pred             Hhhcchhheeeeehhccc---eehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehhee-ccccccc
Confidence            444454444333334444   468999999999999999999999999999999887666555444444422 1222111


Q ss_pred             ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHH-HhcChhhhhc
Q 024649          197 RVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAI-VIQDFDAVMN  264 (265)
Q Consensus       197 ~~~~~~~~G~~~vl~a~~ls~~a~V~~E~~lK~~~~~~~~~~n~~L~~~g~~~~~~~~-~~~d~~~v~~  264 (265)
                       ...-...|.++-+.+++.-++-++|++|.+-..++ .+|...+...+++.+..+..+ +..|.+++.+
T Consensus       179 -~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~-~iw~lt~ynnv~a~lLflpll~lnge~~~v~~  245 (347)
T KOG1442|consen  179 -TGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGD-CIWRLTAYNNVNALLLFLPLLILNGEFQAVVG  245 (347)
T ss_pred             -cCccchhhhHHHHHHHHHHHHHHHhhheecccccC-eehhhHHHHHHHHHHHHHHHHHHcchHHHHcC
Confidence             12345789999999999999999999998877776 899999999999987766655 4467777643

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=97.31  E-value=0.0099  Score=53.95  Aligned_cols=76  Identities=16%  Similarity=0.158  Sum_probs=64.1

Q ss_pred             hhhhhhhhhHHH-HHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhccccccc
Q 024649          117 DEVIVYPIPAVL-YLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (265)
Q Consensus       117 ~~~~~~~iPa~l-y~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~  192 (265)
                      ..+.....-+++ -.+.+.+.++++++++++...++..+.++++++++++++||++++.||.|.++.+.|+.+.+..
T Consensus       210 ~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~  286 (292)
T PRK11272        210 SGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLG  286 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            333344444443 4477889999999999999999999999999999999999999999999999999999887654

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.30  E-value=0.0062  Score=55.69  Aligned_cols=143  Identities=16%  Similarity=0.139  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHhh-cCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhh
Q 024649           47 KSVVTLALTVLTSSQAILIVWSK-RAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIP  125 (265)
Q Consensus        47 ~~~~l~lL~l~~s~~~ll~~~s~-~~g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iP  125 (265)
                      +.+.+++-.+..+.+...-+... +.+.   .+.-.++......+.+.......-...+..+..+-....|.-.....+-
T Consensus       155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~---~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~  231 (303)
T PF08449_consen  155 GIILLLLSLLLDAFTGVYQEKLFKKYGK---SPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLF  231 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHH
Confidence            55555555555666666665333 2232   3466777788877766555433200111000001111233333444555


Q ss_pred             HHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhccccccc
Q 024649          126 AVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (265)
Q Consensus       126 a~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~  192 (265)
                      ++.-++.....+.-.+..+|.+..+...++-++|-+++.++.++++++.||.|+++.+.|..+-...
T Consensus       232 s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~  298 (303)
T PF08449_consen  232 SLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYA  298 (303)
T ss_pred             HHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHh
Confidence            5555666666677789999999999999999999999999999999999999999999999876544

; GO: 0055085 transmembrane transport

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.30  E-value=0.01  Score=53.78  Aligned_cols=143  Identities=12%  Similarity=0.150  Sum_probs=103.3

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHcCChh-HHHH
Q 024649           72 GKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAP-GYQI  150 (265)
Q Consensus        72 g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPa~ly~~~n~L~~~al~~l~~~-t~qv  150 (265)
                      |+.++++...+.+.-++   +++.+...  .+      +.+..+.+.++.-.+.+++..+.+..+|.+.+++..+ +.=+
T Consensus         9 gG~~~~Q~lG~t~Gali---~alv~~~~--~~------p~~~~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPi   77 (269)
T PF06800_consen    9 GGKPANQILGTTIGALI---FALVVFLF--RQ------PAFSMSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPI   77 (269)
T ss_pred             CCcHHHHHHHHHHHHHH---HHHHHHHH--hC------CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeecc
Confidence            44577776666555444   44444331  11      2232234666777888899999999999999999866 6666


Q ss_pred             HhhhHHHHHHHHHHHHhcCCCCHHHHH----HHHHHHhhcccccccCCCCcc---ccchhhHHHHHHHHHHHHHHHHHHH
Q 024649          151 LKNLNIISTGVLYRIILKKKLSEIQWA----AFILLCCGCTTAQLNSNSDRV---LQTPLQGWIMAIVMALLSGFAGVYT  223 (265)
Q Consensus       151 l~q~kii~TAl~s~~~L~~~ls~~qw~----al~ll~~Gv~l~~~~~~~~~~---~~~~~~G~~~vl~a~~ls~~a~V~~  223 (265)
                      -...+++.|++..+++++|--+..+|.    |++++++|+.+....+.+++.   ..+.--|+...+++.+-+.+..+..
T Consensus        78 Stg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~  157 (269)
T PF06800_consen   78 STGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIP  157 (269)
T ss_pred             chhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccccccccchhhHHHHHHHHHHHHHHHHHHH
Confidence            678999999999999999988888876    888899999998877654331   2345668888888888777777764


Q ss_pred             HH
Q 024649          224 EA  225 (265)
Q Consensus       224 E~  225 (265)
                      +.
T Consensus       158 ~~  159 (269)
T PF06800_consen  158 KA  159 (269)
T ss_pred             Hh
Confidence            43

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=97.25  E-value=0.00084  Score=60.51  Aligned_cols=107  Identities=13%  Similarity=0.149  Sum_probs=81.0

Q ss_pred             hhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCC-------CC
Q 024649          124 IPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSN-------SD  196 (265)
Q Consensus       124 iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~-------~~  196 (265)
                      +=+++.+....++|++++||+-+-..++.=+.+.+|++|++.+|||++|+..-++..+.+.|++++.-++.       ++
T Consensus       102 LRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~  181 (346)
T KOG4510|consen  102 LRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGE  181 (346)
T ss_pred             eehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCcccc
Confidence            34566677888999999999999999999999999999999999999999999999999999998753321       11


Q ss_pred             ccc--cchhhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 024649          197 RVL--QTPLQGWIMAIVMALLSGFAGVYTEAIMKKR  230 (265)
Q Consensus       197 ~~~--~~~~~G~~~vl~a~~ls~~a~V~~E~~lK~~  230 (265)
                      ++.  .....|.+..+.+++..+--.+...++=|+-
T Consensus       182 ~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~  217 (346)
T KOG4510|consen  182 DSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNA  217 (346)
T ss_pred             ccccccccCCchHHHHHhHhhhhhHHHHHHHhhccc
Confidence            111  2345677776666666555555566654543

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=97.00  E-value=0.019  Score=52.82  Aligned_cols=66  Identities=20%  Similarity=0.308  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhccccccc
Q 024649          127 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (265)
Q Consensus       127 ~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~  192 (265)
                      +++.+.+.+.+.++.+.|++..+=+....++++++++.++||||+++..|.|.++.++|.+++-..
T Consensus        58 ~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~  123 (300)
T PF05653_consen   58 LLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIF  123 (300)
T ss_pred             HHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEe
Confidence            578899999999999999999999999999999999999999999999999999999999876543

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.99  E-value=0.0036  Score=47.61  Aligned_cols=61  Identities=15%  Similarity=0.225  Sum_probs=38.8

Q ss_pred             hhhhHHHHHHHHHHHHHHHHcCChh-HHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 024649          122 YPIPAVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILL  182 (265)
Q Consensus       122 ~~iPa~ly~~~n~L~~~al~~l~~~-t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll  182 (265)
                      ....-.+|.+...+...+++++|.+ .|-+.....++.+++.+.+++||++|+.||.++.+.
T Consensus        32 ~~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   32 TILAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             --HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            3344458999999999999999988 567777899999999999999999999999998763

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=96.92  E-value=0.004  Score=49.28  Aligned_cols=70  Identities=19%  Similarity=0.285  Sum_probs=62.5

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHcCChhHH-HHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccc
Q 024649          120 IVYPIPAVLYLVKNLLQYYIFAYVDAPGY-QILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA  189 (265)
Q Consensus       120 ~~~~iPa~ly~~~n~L~~~al~~l~~~t~-qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~  189 (265)
                      ++|.+|=+++.....++|+.+..-|-+.. =+.+.+..++|++..+++.+|..++..|+|+.+.++|+.+.
T Consensus        42 ~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   42 PKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            57899999999999999999999998744 45568999999999988888888999999999999999764

Many members are annotated as potential transmembrane proteins.

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=96.80  E-value=0.0039  Score=55.77  Aligned_cols=59  Identities=19%  Similarity=0.219  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccc
Q 024649          131 VKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA  189 (265)
Q Consensus       131 ~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~  189 (265)
                      +-..|..++++.+|+.+|.++.+..+.+.|+..+++|+|++|..||++++..+++.+=.
T Consensus       222 lPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~  280 (292)
T COG5006         222 LPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGS  280 (292)
T ss_pred             cchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Confidence            55678889999999999999999999999999999999999999999999887766533

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=96.70  E-value=0.0071  Score=54.78  Aligned_cols=182  Identities=19%  Similarity=0.111  Sum_probs=130.2

Q ss_pred             cccchhhHHHHHHHHHHHHhhhHHHHHHHhhc-CCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccch
Q 024649           39 SELANWKRKSVVTLALTVLTSSQAILIVWSKR-AGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLD  117 (265)
Q Consensus        39 ~~~~~~~~~~~~l~lL~l~~s~~~ll~~~s~~-~g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~~~~~~~~~~  117 (265)
                      .+.++|+.-.+......+.+-....+-.+-.+ .|-+||-..  ..+.+++--  +.+ -+.+  ..... ..+.+..  
T Consensus        36 s~kpkw~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWy--lTlvQf~~Y--sg~-glie--~~~~~-~k~r~iP--  105 (367)
T KOG1582|consen   36 SDKPKWTQFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWY--LTLVQFLVY--SGF-GLIE--LQLIQ-TKRRVIP--  105 (367)
T ss_pred             ccCchhhhHHHHHhHHHHHHHHHHHHHHHHhccccCcccchH--HHHHHHHHH--Hhh-hheE--EEeec-ccceecc--
Confidence            45678888777778888888888888776554 343334321  112222210  111 1100  11111 1111222  


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCCCCc
Q 024649          118 EVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDR  197 (265)
Q Consensus       118 ~~~~~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~~~~  197 (265)
                       +.-|.+.|.+-.....|..-++.|++=++--++..+|++-.-+-+.++=|+|..+....+-.++.+|+++..+.++..+
T Consensus       106 -~rtY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~s  184 (367)
T KOG1582|consen  106 -WRTYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTS  184 (367)
T ss_pred             -hhHhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccC
Confidence             2468888888889999999999999999999999999999999999999999999999999999999999988765432


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 024649          198 VLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPS  232 (265)
Q Consensus       198 ~~~~~~~G~~~vl~a~~ls~~a~V~~E~~lK~~~~  232 (265)
                      + +-...|+.++-.|-+.=++-|=..||.+|..+.
T Consensus       185 P-NF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~  218 (367)
T KOG1582|consen  185 P-NFNLIGVMMISGALLADAVIGNVQEKAMKMNPA  218 (367)
T ss_pred             C-CcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCC
Confidence            2 234679988888888889999999999998875

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=96.63  E-value=0.0095  Score=54.22  Aligned_cols=65  Identities=8%  Similarity=-0.025  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhccccccc
Q 024649          128 LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (265)
Q Consensus       128 ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~  192 (265)
                      .-.+...+.+.+++++||+..+.+....++++.++++++++|++++.||.|..+..+|+.++..+
T Consensus       222 ~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~  286 (296)
T PRK15430        222 VTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD  286 (296)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            34477889999999999999999999999999999999999999999999999998888776543

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=96.33  E-value=0.094  Score=47.60  Aligned_cols=119  Identities=12%  Similarity=0.034  Sum_probs=83.5

Q ss_pred             hhHHHHHHHHHHHHhhhHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhh
Q 024649           44 WKRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYP  123 (265)
Q Consensus        44 ~~~~~~~l~lL~l~~s~~~ll~~~s~~~g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (265)
                      .++..+.+++-.+.+...+.+.++...++       ..+++-|.+=++++.+++....++         ....|..++=.
T Consensus       136 ~~kgi~~Ll~stigy~~Y~~~~~~~~~~~-------~~~~lPqaiGm~i~a~i~~~~~~~---------~~~~k~~~~ni  199 (269)
T PF06800_consen  136 MKKGILALLISTIGYWIYSVIPKAFHVSG-------WSAFLPQAIGMLIGAFIFNLFSKK---------PFFEKKSWKNI  199 (269)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhcCCCh-------hHhHHHHHHHHHHHHHHHhhcccc---------cccccchHHhh
Confidence            34555555555667777777777754432       234445555555554444311011         01123455668


Q ss_pred             hhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHH
Q 024649          124 IPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAA  178 (265)
Q Consensus       124 iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~a  178 (265)
                      ++++++.+.|..++++.+.+-.++--.+.|+.++...+-..++|||+=+++++..
T Consensus       200 l~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~  254 (269)
T PF06800_consen  200 LTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIY  254 (269)
T ss_pred             HHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHH
Confidence            8999999999999999999999999999999999999999999998888887753

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=96.26  E-value=0.01  Score=54.99  Aligned_cols=72  Identities=14%  Similarity=0.228  Sum_probs=65.0

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhccccc
Q 024649          119 VIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ  190 (265)
Q Consensus       119 ~~~~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~  190 (265)
                      ...+..-++++...|...|..+...+|-||||..+.|-++.-+.+++++++++|+.|.+|..+.++|+.+-.
T Consensus       235 ~~~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~  306 (316)
T KOG1441|consen  235 FLILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYS  306 (316)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHH
Confidence            444555559999999999999999999999999999999999999999999999999999999999998753

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=96.20  E-value=0.32  Score=42.70  Aligned_cols=78  Identities=22%  Similarity=0.220  Sum_probs=66.8

Q ss_pred             cchhhhhhhhhHHHHH-HHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhccccccc
Q 024649          115 TLDEVIVYPIPAVLYL-VKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (265)
Q Consensus       115 ~~~~~~~~~iPa~ly~-~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~  192 (265)
                      .++........+++-. +...+.+.+++..+++....+....++++.++.+++++|+.+..||.|..+.+.|+.+....
T Consensus       210 ~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         210 LSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            3445556666666555 68899999999999999999999999999999999999999999999999999999887654

>TIGR00803 nst UDP-galactose transporter

Probab=95.99  E-value=0.012  Score=51.19  Aligned_cols=67  Identities=18%  Similarity=0.135  Sum_probs=60.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhccc
Q 024649          122 YPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTT  188 (265)
Q Consensus       122 ~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l  188 (265)
                      ...+.++.+++..+..+.+++.|+.+..+....+++++++++.++++++++..||.|..+.+.|+.+
T Consensus       155 ~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       155 VWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            4455567788888999999999999999999999999999999999999999999999999888753

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.48  E-value=0.093  Score=48.54  Aligned_cols=66  Identities=23%  Similarity=0.355  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhccccccc
Q 024649          127 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (265)
Q Consensus       127 ~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~  192 (265)
                      +.+.+.+...|.++.+-|++...=+..+.++++|+++..+||||++..-.+|.++.++|..++-.+
T Consensus        72 ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~h  137 (335)
T KOG2922|consen   72 LTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIH  137 (335)
T ss_pred             HHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEe
Confidence            567889999999999999999999999999999999999999999999999999999998876554

>PRK13499 rhamnose-proton symporter; Provisional

Probab=94.29  E-value=4.8  Score=37.90  Aligned_cols=139  Identities=12%  Similarity=0.042  Sum_probs=97.2

Q ss_pred             cchhhhhhhhhHHHHHHHHHHHHHHHHcCChh-HHHHHhhhHHHHHHHHHHHHhcC---CCCHH----HHHHHHHHHhhc
Q 024649          115 TLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKK---KLSEI----QWAAFILLCCGC  186 (265)
Q Consensus       115 ~~~~~~~~~iPa~ly~~~n~L~~~al~~l~~~-t~qvl~q~kii~TAl~s~~~L~~---~ls~~----qw~al~ll~~Gv  186 (265)
                      +++....-.+-+++..+.|..++.+.+++..+ +.-+-..++++.+.++..++++|   -++..    -..++++.++|+
T Consensus        69 ~~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi  148 (345)
T PRK13499         69 SGSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGV  148 (345)
T ss_pred             CHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHH
Confidence            34444555667789999999999999999977 77888889999999999999874   22333    456777888999


Q ss_pred             ccccc----cCCCC----ccccchhhHHHHHHHHHHHHHHHH-------HHHHHHhhcCCCCChHHHHHHHH---HHHHH
Q 024649          187 TTAQL----NSNSD----RVLQTPLQGWIMAIVMALLSGFAG-------VYTEAIMKKRPSRNINVQNFWLY---VFGMA  248 (265)
Q Consensus       187 ~l~~~----~~~~~----~~~~~~~~G~~~vl~a~~ls~~a~-------V~~E~~lK~~~~~~~~~~n~~L~---~~g~~  248 (265)
                      ++...    .+..+    ....+.-.|+...+++.+.+++..       +..|...+...+ +.+.-+.|..   +.+.+
T Consensus       149 ~l~s~Ag~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~-~~~~~lp~~~~~~~G~~~  227 (345)
T PRK13499        149 AIVGRAGQLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVD-PLYAALPSYVVIMGGGAI  227 (345)
T ss_pred             HHHHHhhhhcccccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCC-chHHHHHHHHHHHHHHHH
Confidence            98877    33321    123456789999999999999888       555544333222 4555554443   56666


Q ss_pred             HHHHHH
Q 024649          249 FNAVAI  254 (265)
Q Consensus       249 ~~~~~~  254 (265)
                      .|++-+
T Consensus       228 ~n~~~~  233 (345)
T PRK13499        228 TNLGFC  233 (345)
T ss_pred             HHHHHH
Confidence            665543

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=94.01  E-value=0.092  Score=46.85  Aligned_cols=71  Identities=13%  Similarity=0.143  Sum_probs=61.0

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccc
Q 024649          119 VIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA  189 (265)
Q Consensus       119 ~~~~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~  189 (265)
                      ++-...-|+.-.+.....|.-..+..|-+-++..-++=+||-+.|++++++.++.+||++-++.+.|+..=
T Consensus       241 ~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D  311 (337)
T KOG1580|consen  241 FWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTAD  311 (337)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhH
Confidence            34455666677777788888888999999999999999999999999999999999999999998888653

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=93.82  E-value=1.3  Score=40.06  Aligned_cols=106  Identities=12%  Similarity=0.031  Sum_probs=75.2

Q ss_pred             cchhhhhhhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCC
Q 024649          115 TLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSN  194 (265)
Q Consensus       115 ~~~~~~~~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~  194 (265)
                      ++++.....+=++.-..-|.+.|.++..+|-++..-+-=+.++..|+    +..||..-.-|+++.++=.++.+...++.
T Consensus        67 ~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~GPL~vA~----~~sRr~~d~vwvaLAvlGi~lL~p~~~~~  142 (292)
T COG5006          67 SKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIEFTGPLAVAL----LSSRRLRDFVWVALAVLGIWLLLPLGQSV  142 (292)
T ss_pred             ChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccHHHHHH----HhccchhhHHHHHHHHHHHHhheeccCCc
Confidence            44444555555666778899999999999999887766556655555    34588887888887766544443322111


Q ss_pred             CCccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 024649          195 SDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMK  228 (265)
Q Consensus       195 ~~~~~~~~~~G~~~vl~a~~ls~~a~V~~E~~lK  228 (265)
                          ..-...|..+.+.+..+|+..-+.-+|+=+
T Consensus       143 ----~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~  172 (292)
T COG5006         143 ----WSLDPVGVALALGAGACWALYIVLGQRAGR  172 (292)
T ss_pred             ----CcCCHHHHHHHHHHhHHHHHHHHHcchhcc
Confidence                234568999999999999999999888853

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=93.65  E-value=0.33  Score=39.06  Aligned_cols=57  Identities=16%  Similarity=0.180  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcC----CCCChHHHHHHHHHHHHHHHHHHHHhcChhh
Q 024649          205 GWIMAIVMALLSGFAGVYTEAIMKKR----PSRNINVQNFWLYVFGMAFNAVAIVIQDFDA  261 (265)
Q Consensus       205 G~~~vl~a~~ls~~a~V~~E~~lK~~----~~~~~~~~n~~L~~~g~~~~~~~~~~~d~~~  261 (265)
                      |++++++++++.++..++.|+.+++.    ...+.+.....+...+.++.++.....|+..
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~   61 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQ   61 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            78899999999999999999999994    3347777777778888888877765545443

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=93.25  E-value=4.5  Score=37.95  Aligned_cols=64  Identities=14%  Similarity=0.066  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCC
Q 024649          131 VKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSN  194 (265)
Q Consensus       131 ~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~  194 (265)
                      +...+.-+.++.-+|..+.+=.-+..+.+.++..++.++++++..++|.++.++|..+....+.
T Consensus       245 ~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~  308 (334)
T PF06027_consen  245 LFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAES  308 (334)
T ss_pred             HHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCC
Confidence            3334445566777888788777788888999999999999999999999999999999876553

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK13499 rhamnose-proton symporter; Provisional

Probab=92.26  E-value=4.8  Score=37.94  Aligned_cols=76  Identities=9%  Similarity=0.158  Sum_probs=55.4

Q ss_pred             chhhhhhhhhHHHHHHHHHHHHHHHHcCChhHHHH---Hh-hhHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHhh
Q 024649          116 LDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQI---LK-NLNIISTGVLYRIILKKKLS------EIQWAAFILLCCG  185 (265)
Q Consensus       116 ~~~~~~~~iPa~ly~~~n~L~~~al~~l~~~t~qv---l~-q~kii~TAl~s~~~L~~~ls------~~qw~al~ll~~G  185 (265)
                      +++...-++++++..++|..++++-+.+...+.-+   +. |+.+++..+-.. +|||+=+      +.-+.++++.++|
T Consensus       257 ~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g  335 (345)
T PRK13499        257 ITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILA  335 (345)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHH
Confidence            34555568888999999999999999884442223   45 888788777776 5886555      5567778888888


Q ss_pred             ccccccc
Q 024649          186 CTTAQLN  192 (265)
Q Consensus       186 v~l~~~~  192 (265)
                      ..++++.
T Consensus       336 ~~lig~~  342 (345)
T PRK13499        336 ANIVGLG  342 (345)
T ss_pred             HHHHhhc
Confidence            8777654

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=90.63  E-value=2.4  Score=39.18  Aligned_cols=70  Identities=14%  Similarity=0.210  Sum_probs=60.2

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhccc
Q 024649          119 VIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTT  188 (265)
Q Consensus       119 ~~~~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l  188 (265)
                      .+-+.+-+.+-++..+..|+-++...+-++..+.-++=+++-+++.++.++++++.||.+..+.+.|+.+
T Consensus       241 ~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l  310 (327)
T KOG1581|consen  241 AFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL  310 (327)
T ss_pred             HHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence            3445666677788888889999999999999999999999999999999999999999998888777754

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=90.04  E-value=9.1  Score=31.07  Aligned_cols=122  Identities=14%  Similarity=0.030  Sum_probs=72.9

Q ss_pred             HHHHHhhhHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHHHHHHH
Q 024649           53 ALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVK  132 (265)
Q Consensus        53 lL~l~~s~~~ll~~~s~~~g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPa~ly~~~  132 (265)
                      ++.+|...+.-+.+.   -| .++..+..++...++-+.+...+.    ++..   ..+..   +..+.+-..+++-.+.
T Consensus        12 ~i~~q~~~N~~L~~~---~g-s~~~as~i~~~~G~i~~~i~~~~~----~~~~---~~~~~---~~p~w~~lGG~lG~~~   77 (138)
T PF04657_consen   12 LIALQAAFNGQLGKA---LG-SPLVASFISFGVGFILLLIILLIT----GRPS---LASLS---SVPWWAYLGGLLGVFF   77 (138)
T ss_pred             HHHHHHHHHHHHHHH---hC-ccHHHHHHHHHHHHHHHHHHHHHh----cccc---cchhc---cCChHHhccHHHHHHH
Confidence            444555544444333   23 378888888888887544333222    1111   11111   1123333466777777


Q ss_pred             HHHHHHHHHcCChhHHHHHhh-hHHHHHHHHHHH----HhcCCCCHHHHHHHHHHHhhccc
Q 024649          133 NLLQYYIFAYVDAPGYQILKN-LNIISTGVLYRI----ILKKKLSEIQWAAFILLCCGCTT  188 (265)
Q Consensus       133 n~L~~~al~~l~~~t~qvl~q-~kii~TAl~s~~----~L~~~ls~~qw~al~ll~~Gv~l  188 (265)
                      -....+....+.++...++.= .+++...++-.+    .-++++++.|..++.++.+|+.+
T Consensus        78 V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   78 VLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            777777888898886555544 455555555443    35699999999999999999863

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=89.47  E-value=17  Score=33.40  Aligned_cols=128  Identities=13%  Similarity=0.033  Sum_probs=85.6

Q ss_pred             HHHHhhhHHHHHHHhhcCCCccchHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHHHHHHH
Q 024649           54 LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCA-LSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVK  132 (265)
Q Consensus        54 L~l~~s~~~ll~~~s~~~g~~~y~~st~v~l~E~lKl~-is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPa~ly~~~  132 (265)
                      +++.++...++-|..+.|       ...-+.-|++-+. +|++.+..  -..+.  .--....+..+..+...+..-++-
T Consensus       156 la~sf~~Ygl~RK~~~v~-------a~~g~~lE~l~l~p~al~yl~~--l~~~~--~~~~~~~~~~~~LLv~aG~vTavp  224 (293)
T COG2962         156 LALSFGLYGLLRKKLKVD-------ALTGLTLETLLLLPVALIYLLF--LADSG--QFLQQNANSLWLLLVLAGLVTAVP  224 (293)
T ss_pred             HHHHHHHHHHHHHhcCCc-------hHHhHHHHHHHHhHHHHHHHHH--HhcCc--hhhhcCCchHHHHHHHhhHHHHHH
Confidence            344445555555554442       2334556766554 45544432  21111  000112444555666666666677


Q ss_pred             HHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhccccccc
Q 024649          133 NLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (265)
Q Consensus       133 n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~  192 (265)
                      -.+.-.|.+.+|-++.-++....+...=++++++.||+++..|+.+-+..-+|+++...+
T Consensus       225 L~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d  284 (293)
T COG2962         225 LLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSID  284 (293)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            777778889999999999999999999999999999999999999999998888877654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	265
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.23
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	97.98

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.23  E-value=6.4e-06  Score=63.58  Aligned_cols=73  Identities=16%  Similarity=0.174  Sum_probs=64.8

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHcCChhHHHHH-hhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccC
Q 024649          121 VYPIPAVLYLVKNLLQYYIFAYVDAPGYQIL-KNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS  193 (265)
Q Consensus       121 ~~~iPa~ly~~~n~L~~~al~~l~~~t~qvl-~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~  193 (265)
                      ....-.++|.+...+...+++++|.++..-+ ....++.+++++++++||++|+.||.++.+.++|+..+...+
T Consensus        32 ~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           32 PSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            3445556899999999999999999977666 899999999999999999999999999999999999887654

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=97.98  E-value=6.6e-06  Score=66.11  Aligned_cols=72  Identities=17%  Similarity=0.184  Sum_probs=52.1

Q ss_pred             hhhhHHHHHHHHHHHHHHHHcCChhHHHHH-hhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccC
Q 024649          122 YPIPAVLYLVKNLLQYYIFAYVDAPGYQIL-KNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS  193 (265)
Q Consensus       122 ~~iPa~ly~~~n~L~~~al~~l~~~t~qvl-~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~  193 (265)
                      ..+-.++|.+...+.+.+++++|+++...+ ....++++++++++++||++++.||+|+.+.++|+.++...+
T Consensus        33 ~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             -CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            345556899999999999999999955555 899999999999999999999999999999999999987643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00