Citrus Sinensis ID: 024665

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260----
Protein Sequence
MRPPRGRGGGGGFRGGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGRGRGGGGMKGGSKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCLILFQPIVINNLQSVNNETKGGIFEFLFSLFLN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcEEccccEEEEEccccEEEEEcccccccccccEEEEEEcccccEEEEEEccccHHHHHHHHHccccccccccccEEEEEcccccccccccccEEccccEEEEEEccccHHHHHHHHHHccccEEEcccccccccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccEEEEEccccccEEEEEccccEEEEEccccccEEccEEEEEEEcccccEEEEEEccccccHHHHHHHccccccccccccEEEEEccccccHHHHHHHHHccccEEEEEEccHHHHHHHHHHHcccccEEEEEcccccHHHHccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mrpprgrgggggfrggrgdgggrgrgggrgggggrgggsamrgrgggrgggrgggrgrggggmkggskvvvephrhegvfiakgKEDALVTKNLVAGeavynekrisvqnedgtkveyrIWNPFRSKLAAAVLGgvdniwikpgARVLYLGaasgttvshvsdivgpnGVVYAVEFSHRSGRDLVNMAKKrtnvipiiedarhpakYRMLVGMVDVIfsdvaqpdQVCFLCLILFQPIVINnlqsvnnetkgGIFEFLFSLFLN
Flexible Loop (DISEMBL)
mrpprgrgggggfrggrgdgggrgrgggrgggggrgggsamrgrgggrgggrgggrgrggggmkggSKVVVEPHRHEGvfiakgkedalVTKNLVageavynekrisvqnedgtkvEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHrsgrdlvnmakkrtnvipiiedarhPAKYRMLVGMVDVIFSDVAQPDQVCFLCLILFQPIVINNLQSVNNETKGGIFEFLFSLFLN
Low Complexity Region (SEG)
MRPPrgrgggggfrggrgdgggrgrgggrgggggrgggsamrgrgggrgggrgggrgrggggmkggSKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCLILFQPIVINNLQSVNNETKGGIFEFLFSLFLN
Disordered region (IsUnstruct)
*************************************************************************HRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCLILFQPIVINNLQSVNNETKGGIFEFLFSLFL*
Disordered Region (DISOPRED)
************************************************************************PHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCLILFQPIVINNLQSVNNETKGGIFEFLFSLFLN
Disordered Region (DISEMBL)
***********GFRGGRGDGGG********************************************SKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCLILFQPIVINNLQSVNNETKGGIFEFLFSLFLN
Disordered Region (DISPRO)
*****************************************************************GSKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCLILFQPIVINNLQSVNNETKGGIFEFLFSLFLN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRPPRGRGGGGGFRGGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGRGRGGGGMKGGSKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCLILFQPIVINNLQSVNNETKGGIFEFLFSLFLN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	264	2.2.26 [Sep-21-2011]
Q9FEF8	308	Probable mediator of RNA	yes	no	0.643	0.551	0.923	4e-89
Q94AH9	320	Mediator of RNA polymeras	no	no	0.643	0.531	0.917	1e-88
P35551	305	rRNA 2'-O-methyltransfera	yes	no	0.628	0.544	0.795	3e-76
P35550	327	rRNA 2'-O-methyltransfera	yes	no	0.636	0.513	0.775	3e-74
P22087	321	rRNA 2'-O-methyltransfera	yes	no	0.636	0.523	0.775	3e-74
P22509	327	rRNA 2'-O-methyltransfera	yes	no	0.636	0.513	0.775	4e-74
P22232	323	rRNA 2'-O-methyltransfera	N/A	no	0.617	0.504	0.789	1e-72
Q8I1F4	345	rRNA 2'-O-methyltransfera	N/A	no	0.594	0.455	0.803	8e-72
Q9W1V3	344	rRNA 2'-O-methyltransfera	yes	no	0.594	0.456	0.797	4e-71
A6NHQ2	333	rRNA/tRNA 2'-O-methyltran	no	no	0.636	0.504	0.739	4e-70

>sp|Q9FEF8|MD36B_ARATH Probable mediator of RNA polymerase II transcription subunit 36b OS=Arabidopsis thaliana GN=MED36B PE=1 SV=1

 Score =  327 bits (839), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 157/170 (92%), Positives = 162/170 (95%)

Query: 63  MKGGSKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWN 122
           MKGGSKV+VEPHRH GVFIAKGKEDALVTKNLV GEAVYNEKRISVQNEDGTKVEYR+WN
Sbjct: 63  MKGGSKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKVEYRVWN 122

Query: 123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGR 182
           PFRSKLAAA+LGGVDNIWIKPGA+VLYLGAASGTTVSHVSD+VGP G VYAVEFSHRSGR
Sbjct: 123 PFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVEFSHRSGR 182

Query: 183 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCL 232
           DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ   L L
Sbjct: 183 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILAL 232

Involved in pre-rRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in pre-ribosomal RNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q94AH9|MD36A_ARATH Mediator of RNA polymerase II transcription subunit 36a OS=Arabidopsis thaliana GN=MED36A PE=1 SV=2

 Score =  326 bits (835), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 156/170 (91%), Positives = 161/170 (94%)

Query: 63  MKGGSKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWN 122
           MKGGSKV+VEPHRH GVFIAKGKEDALVTKNLV GEAVYNEKRISVQNEDGTK EYR+WN
Sbjct: 74  MKGGSKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKTEYRVWN 133

Query: 123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGR 182
           PFRSKLAAA+LGGVDNIWIKPGA+VLYLGAASGTTVSHVSD+VGP G VYAVEFSHRSGR
Sbjct: 134 PFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVEFSHRSGR 193

Query: 183 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCL 232
           DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ   L L
Sbjct: 194 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILAL 243

Involved in pre-rRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in pre-ribosomal RNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|P35551|FBRL_SCHPO rRNA 2'-O-methyltransferase fibrillarin OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fib1 PE=1 SV=1

 Score =  285 bits (729), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 132/166 (79%), Positives = 153/166 (92%)

Query: 67  SKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRS 126
           +KV++EPHRH GVFIA+GKED LVT+NLV GE+VYNEKRISV + DGTKVEYR+WNPFRS
Sbjct: 71  AKVIIEPHRHAGVFIARGKEDLLVTRNLVPGESVYNEKRISVDSPDGTKVEYRVWNPFRS 130

Query: 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN 186
           KLAA +LGG+DNI+IKPGARVLYLGAA+GT+VSHV+D+VGP G+VYAVEFSHRSGRDL+N
Sbjct: 131 KLAAGILGGLDNIYIKPGARVLYLGAANGTSVSHVADVVGPEGLVYAVEFSHRSGRDLLN 190

Query: 187 MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCL 232
           MAKKRTNVIPI+EDARH  KYRMLVGMVDV+F+DVAQPDQ   + L
Sbjct: 191 MAKKRTNVIPIVEDARHVQKYRMLVGMVDVVFADVAQPDQARIVAL 236

Involved in pre-rRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in pre-ribosomal RNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|P35550|FBRL_MOUSE rRNA 2'-O-methyltransferase fibrillarin OS=Mus musculus GN=Fbl PE=1 SV=2

 Score =  278 bits (711), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 131/169 (77%), Positives = 150/169 (88%), Gaps = 1/169 (0%)

Query: 64  KGGSKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNP 123
           + G  V+VEPHRHEGVFI +GKEDALVTKNLV GE+VY EKR+S+ +E   K+EYR WNP
Sbjct: 87  QSGKNVMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSI-SEGDDKIEYRAWNP 145

Query: 124 FRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRD 183
           FRSKLAAA+LGGVD I IKPGA+VLYLGAASGTTVSHVSDIVGP+G+VYAVEFSHRSGRD
Sbjct: 146 FRSKLAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRD 205

Query: 184 LVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCL 232
           L+N+AKKRTN+IP+IEDARHP KYRML+ MVDVIF+DVAQPDQ   + L
Sbjct: 206 LINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVAL 254

Involved in pre-rRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in pre-ribosomal RNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|P22087|FBRL_HUMAN rRNA 2'-O-methyltransferase fibrillarin OS=Homo sapiens GN=FBL PE=1 SV=2

 Score =  278 bits (710), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 131/169 (77%), Positives = 150/169 (88%), Gaps = 1/169 (0%)

Query: 64  KGGSKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNP 123
           + G  V+VEPHRHEGVFI +GKEDALVTKNLV GE+VY EKR+S+ +E   K+EYR WNP
Sbjct: 81  QSGKNVMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSI-SEGDDKIEYRAWNP 139

Query: 124 FRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRD 183
           FRSKLAAA+LGGVD I IKPGA+VLYLGAASGTTVSHVSDIVGP+G+VYAVEFSHRSGRD
Sbjct: 140 FRSKLAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRD 199

Query: 184 LVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCL 232
           L+N+AKKRTN+IP+IEDARHP KYRML+ MVDVIF+DVAQPDQ   + L
Sbjct: 200 LINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVAL 248

Involved in pre-rRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in pre-ribosomal RNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|P22509|FBRL_RAT rRNA 2'-O-methyltransferase fibrillarin OS=Rattus norvegicus GN=Fbl PE=1 SV=2

 Score =  278 bits (710), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 131/169 (77%), Positives = 150/169 (88%), Gaps = 1/169 (0%)

Query: 64  KGGSKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNP 123
           + G  V+VEPHRHEGVFI +GKEDALVTKNLV GE+VY EKR+S+ +E   K+EYR WNP
Sbjct: 87  QSGKNVMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSI-SEGDDKIEYRAWNP 145

Query: 124 FRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRD 183
           FRSKLAAA+LGGVD I IKPGA+VLYLGAASGTTVSHVSDIVGP+G+VYAVEFSHRSGRD
Sbjct: 146 FRSKLAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRD 205

Query: 184 LVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCL 232
           L+N+AKKRTN+IP+IEDARHP KYRML+ MVDVIF+DVAQPDQ   + L
Sbjct: 206 LINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVAL 254

Involved in pre-rRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in pre-ribosomal RNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|P22232|FBRL_XENLA rRNA 2'-O-methyltransferase fibrillarin OS=Xenopus laevis GN=fbl PE=2 SV=1

 Score =  272 bits (696), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 131/166 (78%), Positives = 148/166 (89%), Gaps = 3/166 (1%)

Query: 68  KVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDG-TKVEYRIWNPFRS 126
           KV+VEPHRHEG+FI +GKEDALVTKNLV GE+VY EKRISV  EDG  K EYR WNPFRS
Sbjct: 87  KVIVEPHRHEGIFICRGKEDALVTKNLVPGESVYGEKRISV--EDGEVKTEYRAWNPFRS 144

Query: 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN 186
           K+AAA+LGGVD I IKPG +VLYLGAASGTTVSHVSD+VGP G+VYAVEFSHRSGRDL+N
Sbjct: 145 KIAAAILGGVDQIHIKPGVKVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLIN 204

Query: 187 MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCL 232
           +AKKRTN+IP+IEDARHP KYR+LVGMVDV+F+DVAQPDQ   + L
Sbjct: 205 VAKKRTNIIPVIEDARHPHKYRILVGMVDVVFADVAQPDQTRIVAL 250

Involved in pre-rRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in pre-ribosomal RNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA.

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q8I1F4|FBRL_DROER rRNA 2'-O-methyltransferase fibrillarin OS=Drosophila erecta GN=Fib PE=3 SV=1

 Score =  270 bits (690), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 127/158 (80%), Positives = 144/158 (91%), Gaps = 1/158 (0%)

Query: 69  VVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKL 128
           V +EPHRHEGVFIA+GKEDALVT+N V G  VY EKRISV+N +G K+EYR+WNPFRSKL
Sbjct: 112 VTIEPHRHEGVFIARGKEDALVTRNFVPGSEVYGEKRISVEN-NGEKIEYRVWNPFRSKL 170

Query: 129 AAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA 188
           AAAVLGGV+ I + PG++VLYLGAASGTTVSHVSD+VGP G+VYAVEFSHRSGRDL+N+A
Sbjct: 171 AAAVLGGVEQIHMPPGSKVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLINVA 230

Query: 189 KKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ 226
           KKRTN+IPIIEDARHP KYRMLVGMVD IF+DVAQPDQ
Sbjct: 231 KKRTNIIPIIEDARHPHKYRMLVGMVDTIFADVAQPDQ 268

Involved in pre-rRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in pre-ribosomal RNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA.

Drosophila erecta (taxid: 7220)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9W1V3|FBRL_DROME rRNA 2'-O-methyltransferase fibrillarin OS=Drosophila melanogaster GN=Fib PE=2 SV=1

 Score =  268 bits (684), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 126/158 (79%), Positives = 143/158 (90%), Gaps = 1/158 (0%)

Query: 69  VVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKL 128
           V +EPHRHEGVFIA+GKEDALVT+N V G  VY EKRISV+  +G K+EYR+WNPFRSKL
Sbjct: 111 VTIEPHRHEGVFIARGKEDALVTRNFVPGSEVYGEKRISVET-NGEKIEYRVWNPFRSKL 169

Query: 129 AAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA 188
           AAAVLGGV+ I + PG++VLYLGAASGTTVSHVSD+VGP G+VYAVEFSHRSGRDL+N+A
Sbjct: 170 AAAVLGGVEQIHMPPGSKVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLINVA 229

Query: 189 KKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ 226
           KKRTN+IPIIEDARHP KYRMLVGMVD IF+DVAQPDQ
Sbjct: 230 KKRTNIIPIIEDARHPHKYRMLVGMVDTIFADVAQPDQ 267

Involved in pre-rRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in pre-ribosomal RNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA.

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A6NHQ2|FBLL1_HUMAN rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1 OS=Homo sapiens GN=FBLL1 PE=1 SV=1

 Score =  264 bits (675), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 125/169 (73%), Positives = 146/169 (86%), Gaps = 1/169 (0%)

Query: 64  KGGSKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNP 123
           KG   V VEPHRHEGVFI +G EDALVT N+V G++VY E+R++V  E G K EYR WNP
Sbjct: 93  KGAMVVSVEPHRHEGVFIYRGAEDALVTLNMVPGQSVYGERRVTV-TEGGVKQEYRTWNP 151

Query: 124 FRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRD 183
           FRSKLAAA+LGGVD I IKP ++VLYLGAASGTTVSHVSDI+GP+G+VYAVEFSHR+GRD
Sbjct: 152 FRSKLAAAILGGVDQIHIKPKSKVLYLGAASGTTVSHVSDIIGPDGLVYAVEFSHRAGRD 211

Query: 184 LVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCL 232
           LVN+AKKRTN+IP++EDARHP KYRML+GMVDVIF+DVAQPDQ   + L
Sbjct: 212 LVNVAKKRTNIIPVLEDARHPLKYRMLIGMVDVIFADVAQPDQSRIVAL 260

Involved in pre-rRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in pre-ribosomal RNA.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	264
357444829	313	Fibrillarin [Medicago truncatula] gi|358	0.643	0.543	0.929	2e-87
30696189	308	rRNA 2'-O-methyltransferase fibrillarin	0.643	0.551	0.923	2e-87
302143818	245	unnamed protein product [Vitis vinifera]	0.643	0.693	0.917	4e-87
224122310	245	predicted protein [Populus trichocarpa]	0.643	0.693	0.911	6e-87
18416588	320	rRNA 2'-O-methyltransferase fibrillarin	0.643	0.531	0.917	7e-87
15028155	320	putative fibrillarin 2 protein AtFib2 [A	0.643	0.531	0.917	9e-87
224134889	245	predicted protein [Populus trichocarpa]	0.643	0.693	0.905	1e-86
356538021	315	PREDICTED: rRNA 2'-O-methyltransferase f	0.643	0.539	0.917	2e-86
255545212	247	fibrillarin, putative [Ricinus communis]	0.643	0.688	0.929	2e-86
297792583	307	hypothetical protein ARALYDRAFT_495317 [	0.636	0.547	0.922	3e-86

>gi|357444829|ref|XP_003592692.1| Fibrillarin [Medicago truncatula] gi|358345300|ref|XP_003636719.1| Fibrillarin [Medicago truncatula] gi|355481740|gb|AES62943.1| Fibrillarin [Medicago truncatula] gi|355502654|gb|AES83857.1| Fibrillarin [Medicago truncatula] gi|388494564|gb|AFK35348.1| unknown [Medicago truncatula]

 Score =  327 bits (839), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 158/170 (92%), Positives = 163/170 (95%)

Query: 63  MKGGSKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWN 122
           MKGGSKV+VEPHRHEG+FIAKGKEDALVTKNLV GEAVYNEKR++VQNEDGTK EYRIWN
Sbjct: 69  MKGGSKVIVEPHRHEGIFIAKGKEDALVTKNLVPGEAVYNEKRVTVQNEDGTKTEYRIWN 128

Query: 123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGR 182
           PFRSKLAAAVLGGVDNIWIKPGA+VLYLGAASGTTVSHVSDIVGP GVVYAVEFSHRSGR
Sbjct: 129 PFRSKLAAAVLGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGR 188

Query: 183 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCL 232
           DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ   L L
Sbjct: 189 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILGL 238

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30696189|ref|NP_568772.3| rRNA 2'-O-methyltransferase fibrillarin 1 [Arabidopsis thaliana] gi|67461076|sp|Q9FEF8.1|MD36B_ARATH RecName: Full=Probable mediator of RNA polymerase II transcription subunit 36b; AltName: Full=SKP1-interacting partner 7; AltName: Full=rRNA 2'-O-methyltransferase fibrillarin 1 gi|9965653|gb|AAG10103.1|AF233443_1 fibrillarin 1 [Arabidopsis thaliana] gi|9965751|gb|AAG10152.1| fibrillarin 1 [Arabidopsis thaliana] gi|10177413|dbj|BAB10544.1| fibrillarin-like [Arabidopsis thaliana] gi|22654993|gb|AAM98088.1| AT5g52470/K24M7_22 [Arabidopsis thaliana] gi|28416513|gb|AAO42787.1| AT5g52470/K24M7_22 [Arabidopsis thaliana] gi|110740295|dbj|BAF02044.1| fibrillarin homolog [Arabidopsis thaliana] gi|332008834|gb|AED96217.1| rRNA 2'-O-methyltransferase fibrillarin 1 [Arabidopsis thaliana]

 Score =  327 bits (839), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 157/170 (92%), Positives = 162/170 (95%)

Query: 63  MKGGSKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWN 122
           MKGGSKV+VEPHRH GVFIAKGKEDALVTKNLV GEAVYNEKRISVQNEDGTKVEYR+WN
Sbjct: 63  MKGGSKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKVEYRVWN 122

Query: 123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGR 182
           PFRSKLAAA+LGGVDNIWIKPGA+VLYLGAASGTTVSHVSD+VGP G VYAVEFSHRSGR
Sbjct: 123 PFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVEFSHRSGR 182

Query: 183 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCL 232
           DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ   L L
Sbjct: 183 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILAL 232

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143818|emb|CBI22679.3| unnamed protein product [Vitis vinifera]

 Score =  327 bits (837), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 156/170 (91%), Positives = 163/170 (95%)

Query: 63  MKGGSKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWN 122
           MKGGS+VVVEPHRHEGVFIAKGKEDALVTKN+V GEAVYNEKRISVQNEDG+K+EYR+WN
Sbjct: 1   MKGGSRVVVEPHRHEGVFIAKGKEDALVTKNMVPGEAVYNEKRISVQNEDGSKIEYRVWN 60

Query: 123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGR 182
           PFRSKLAAA+LGGVD IWIKPGARVLYLGAASGTTVSHVSD+VGP GVVYAVEFSHRSGR
Sbjct: 61  PFRSKLAAAILGGVDEIWIKPGARVLYLGAASGTTVSHVSDVVGPTGVVYAVEFSHRSGR 120

Query: 183 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCL 232
           DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ   L L
Sbjct: 121 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILAL 170

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122310|ref|XP_002318803.1| predicted protein [Populus trichocarpa] gi|222859476|gb|EEE97023.1| predicted protein [Populus trichocarpa]

 Score =  326 bits (836), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 155/170 (91%), Positives = 163/170 (95%)

Query: 63  MKGGSKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWN 122
           MKGGSKVVVEPHRHEGVFIAKGKEDALVTKN+V GE VYNEK+ISVQNEDGTKVEYR+WN
Sbjct: 1   MKGGSKVVVEPHRHEGVFIAKGKEDALVTKNMVPGETVYNEKKISVQNEDGTKVEYRVWN 60

Query: 123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGR 182
           PFRSKLA+A+LGGVD++WIKPGA+VLYLGAASGTTVSHVSDIVGP GVVYAVEFSHRSGR
Sbjct: 61  PFRSKLASAILGGVDDVWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGR 120

Query: 183 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCL 232
           DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ   L L
Sbjct: 121 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILAL 170

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18416588|ref|NP_567724.1| rRNA 2'-O-methyltransferase fibrillarin 2 [Arabidopsis thaliana] gi|67461067|sp|Q94AH9.2|MD36A_ARATH RecName: Full=Mediator of RNA polymerase II transcription subunit 36a; AltName: Full=Fibrillarin-like protein 2; AltName: Full=rRNA 2'-O-methyltransferase fibrillarin 2 gi|9965655|gb|AAG10104.1|AF233444_1 fibrillarin 2 [Arabidopsis thaliana] gi|4914455|emb|CAB43694.1| fibrillarin-like protein [Arabidopsis thaliana] gi|7269413|emb|CAB81373.1| fibrillarin-like protein [Arabidopsis thaliana] gi|9965796|gb|AAG10153.1| fibrillarin 2 [Arabidopsis thaliana] gi|21536840|gb|AAM61172.1| fibrillarin 2 (AtFib2) [Arabidopsis thaliana] gi|23297150|gb|AAN13105.1| fibrillarin 2 (AtFib2) [Arabidopsis thaliana] gi|332659685|gb|AEE85085.1| rRNA 2'-O-methyltransferase fibrillarin 2 [Arabidopsis thaliana]

 Score =  326 bits (835), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 156/170 (91%), Positives = 161/170 (94%)

Query: 63  MKGGSKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWN 122
           MKGGSKV+VEPHRH GVFIAKGKEDALVTKNLV GEAVYNEKRISVQNEDGTK EYR+WN
Sbjct: 74  MKGGSKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKTEYRVWN 133

Query: 123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGR 182
           PFRSKLAAA+LGGVDNIWIKPGA+VLYLGAASGTTVSHVSD+VGP G VYAVEFSHRSGR
Sbjct: 134 PFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVEFSHRSGR 193

Query: 183 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCL 232
           DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ   L L
Sbjct: 194 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILAL 243

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15028155|gb|AAK76701.1| putative fibrillarin 2 protein AtFib2 [Arabidopsis thaliana]

 Score =  325 bits (834), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 156/170 (91%), Positives = 161/170 (94%)

Query: 63  MKGGSKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWN 122
           MKGGSKV+VEPHRH GVFIAKGKEDALVTKNLV GEAVYNEKRISVQNEDGTK EYR+WN
Sbjct: 74  MKGGSKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKTEYRVWN 133

Query: 123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGR 182
           PFRSKLAAA+LGGVDNIWIKPGA+VLYLGAASGTTVSHVSD+VGP G VYAVEFSHRSGR
Sbjct: 134 PFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGSVYAVEFSHRSGR 193

Query: 183 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCL 232
           DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ   L L
Sbjct: 194 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILAL 243

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134889|ref|XP_002321930.1| predicted protein [Populus trichocarpa] gi|222868926|gb|EEF06057.1| predicted protein [Populus trichocarpa]

 Score =  325 bits (833), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 154/170 (90%), Positives = 163/170 (95%)

Query: 63  MKGGSKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWN 122
           M+GGSKVVVEPHRHEGVFIAKGKEDALVTKN+V GE VYNEK++SVQNEDGTKVEYR+WN
Sbjct: 1   MRGGSKVVVEPHRHEGVFIAKGKEDALVTKNMVPGETVYNEKKVSVQNEDGTKVEYRVWN 60

Query: 123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGR 182
           PFRSKLAAA+LGGVD++WIKPGA+VLYLGAASGTTVSHVSDIVGP GVVYAVEFSHRSGR
Sbjct: 61  PFRSKLAAAILGGVDDVWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGR 120

Query: 183 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCL 232
           DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ   L L
Sbjct: 121 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILAL 170

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538021|ref|XP_003537503.1| PREDICTED: rRNA 2'-O-methyltransferase fibrillarin 2-like [Glycine max]

 Score =  324 bits (831), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 156/170 (91%), Positives = 163/170 (95%)

Query: 63  MKGGSKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWN 122
           MKGGSKVVV+PHRH+G+FIAKGKEDALVTKNLV GEAVYNEKRI+VQNEDGTK EYR+WN
Sbjct: 70  MKGGSKVVVQPHRHDGIFIAKGKEDALVTKNLVPGEAVYNEKRITVQNEDGTKEEYRVWN 129

Query: 123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGR 182
           PFRSKLAAA+LGGVDNIWIKPGARVLYLGAASGTTVSHVSD+VGP GVVYAVEFSHRSGR
Sbjct: 130 PFRSKLAAAILGGVDNIWIKPGARVLYLGAASGTTVSHVSDVVGPTGVVYAVEFSHRSGR 189

Query: 183 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCL 232
           DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ   L L
Sbjct: 190 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILGL 239

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545212|ref|XP_002513667.1| fibrillarin, putative [Ricinus communis] gi|223547575|gb|EEF49070.1| fibrillarin, putative [Ricinus communis]

 Score =  324 bits (831), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 159/171 (92%), Positives = 163/171 (95%), Gaps = 1/171 (0%)

Query: 63  MKGGSKVVVEPHRHEGVFIAKG-KEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIW 121
           M+GGSKVVVEPHRHEGVFI KG KEDALVTKNLV GEAVYNEKRISVQNEDGTKVEYR+W
Sbjct: 1   MRGGSKVVVEPHRHEGVFIGKGGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKVEYRVW 60

Query: 122 NPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSG 181
           NPFRSKLAAA+LGGVDNIWIKPGA+VLYLGAASGTTVSHVSDIVGP GVVYAVEFSHRSG
Sbjct: 61  NPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSG 120

Query: 182 RDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCL 232
           RDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ   L L
Sbjct: 121 RDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILAL 171

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792583|ref|XP_002864176.1| hypothetical protein ARALYDRAFT_495317 [Arabidopsis lyrata subsp. lyrata] gi|297310011|gb|EFH40435.1| hypothetical protein ARALYDRAFT_495317 [Arabidopsis lyrata subsp. lyrata]

 Score =  324 bits (830), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 155/168 (92%), Positives = 161/168 (95%)

Query: 63  MKGGSKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWN 122
           MKGGSKV+VEPHRH GVFIAKGKEDALVTKNLV GEAVYNEKRISVQNEDGTK+EYR+WN
Sbjct: 62  MKGGSKVLVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKIEYRVWN 121

Query: 123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGR 182
           PFRSKLAAA+LGGVDNIWIKPGA+VLYLGAASGTTVSHVSD+VGP G VYAVEFSHRSGR
Sbjct: 122 PFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVEFSHRSGR 181

Query: 183 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFL 230
           DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ   L
Sbjct: 182 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARIL 229

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	264
TAIR|locus:2156747	308	FIB1 "fibrillarin 1" [Arabidop	0.628	0.538	0.921	5.4e-79
TAIR|locus:2131386	320	FIB2 "fibrillarin 2" [Arabidop	0.628	0.518	0.915	1.4e-78
POMBASE|SPBC2D10.10c	305	fib1 "fibrillarin, rRNA methyl	0.628	0.544	0.795	1.3e-70
ZFIN|ZDB-GENE-040426-1936	317	fbl "fibrillarin" [Danio rerio	0.625	0.520	0.795	2.7e-68
UNIPROTKB|F1MM59	322	FBL "Uncharacterized protein"	0.617	0.506	0.792	9.2e-68
UNIPROTKB|F1PQN3	313	FBL "Uncharacterized protein"	0.617	0.520	0.792	9.2e-68
UNIPROTKB|P22087	321	FBL "rRNA 2'-O-methyltransfera	0.617	0.507	0.792	9.2e-68
UNIPROTKB|I3L5T3	352	FBL "Uncharacterized protein"	0.617	0.463	0.792	9.2e-68
MGI|MGI:95486	327	Fbl "fibrillarin" [Mus musculu	0.617	0.498	0.792	9.2e-68
RGD|1305542	327	Fbl "fibrillarin" [Rattus norv	0.617	0.498	0.792	9.2e-68

TAIR|locus:2156747 FIB1 "fibrillarin 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 794 (284.6 bits), Expect = 5.4e-79, P = 5.4e-79
 Identities = 153/166 (92%), Positives = 158/166 (95%)

Query:    67 SKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRS 126
             SKV+VEPHRH GVFIAKGKEDALVTKNLV GEAVYNEKRISVQNEDGTKVEYR+WNPFRS
Sbjct:    67 SKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKVEYRVWNPFRS 126

Query:   127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN 186
             KLAAA+LGGVDNIWIKPGA+VLYLGAASGTTVSHVSD+VGP G VYAVEFSHRSGRDLVN
Sbjct:   127 KLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVEFSHRSGRDLVN 186

Query:   187 MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCL 232
             MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ   L L
Sbjct:   187 MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILAL 232

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006364 "rRNA processing" evidence=IEA;IGI

GO:0008033 "tRNA processing" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005730 "nucleolus" evidence=ISS;IDA

GO:0001510 "RNA methylation" evidence=IGI;RCA

GO:0030515 "snoRNA binding" evidence=ISS

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0000478 "endonucleolytic cleavage involved in rRNA processing" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0016571 "histone methylation" evidence=RCA

GO:0016579 "protein deubiquitination" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2131386 FIB2 "fibrillarin 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 790 (283.2 bits), Expect = 1.4e-78, P = 1.4e-78
 Identities = 152/166 (91%), Positives = 157/166 (94%)

Query:    67 SKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRS 126
             SKV+VEPHRH GVFIAKGKEDALVTKNLV GEAVYNEKRISVQNEDGTK EYR+WNPFRS
Sbjct:    78 SKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKTEYRVWNPFRS 137

Query:   127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN 186
             KLAAA+LGGVDNIWIKPGA+VLYLGAASGTTVSHVSD+VGP G VYAVEFSHRSGRDLVN
Sbjct:   138 KLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVEFSHRSGRDLVN 197

Query:   187 MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCL 232
             MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ   L L
Sbjct:   198 MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILAL 243

GO:0003723 "RNA binding" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006364 "rRNA processing" evidence=IEA;IGI;RCA

GO:0008033 "tRNA processing" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0001510 "RNA methylation" evidence=IGI;RCA

GO:0005730 "nucleolus" evidence=IMP;IDA

GO:0030515 "snoRNA binding" evidence=ISS

GO:0016592 "mediator complex" evidence=IDA

GO:0006164 "purine nucleotide biosynthetic process" evidence=RCA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

POMBASE|SPBC2D10.10c fib1 "fibrillarin, rRNA methyltransferase" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
 Identities = 132/166 (79%), Positives = 153/166 (92%)

Query:    67 SKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRS 126
             +KV++EPHRH GVFIA+GKED LVT+NLV GE+VYNEKRISV + DGTKVEYR+WNPFRS
Sbjct:    71 AKVIIEPHRHAGVFIARGKEDLLVTRNLVPGESVYNEKRISVDSPDGTKVEYRVWNPFRS 130

Query:   127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN 186
             KLAA +LGG+DNI+IKPGARVLYLGAA+GT+VSHV+D+VGP G+VYAVEFSHRSGRDL+N
Sbjct:   131 KLAAGILGGLDNIYIKPGARVLYLGAANGTSVSHVADVVGPEGLVYAVEFSHRSGRDLLN 190

Query:   187 MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCL 232
             MAKKRTNVIPI+EDARH  KYRMLVGMVDV+F+DVAQPDQ   + L
Sbjct:   191 MAKKRTNVIPIVEDARHVQKYRMLVGMVDVVFADVAQPDQARIVAL 236

GO:0000154 "rRNA modification" evidence=ISO

GO:0000494 "box C/D snoRNA 3'-end processing" evidence=ISO

GO:0003729 "mRNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=ISO;IDA

GO:0005819 "spindle" evidence=IDA

GO:0006364 "rRNA processing" evidence=ISO

GO:0008033 "tRNA processing" evidence=IEA

GO:0008649 "rRNA methyltransferase activity" evidence=ISO

GO:0031167 "rRNA methylation" evidence=ISO

GO:0032040 "small-subunit processome" evidence=ISO

ZFIN|ZDB-GENE-040426-1936 fbl "fibrillarin" [Danio rerio (taxid:7955)]

 Score = 693 (249.0 bits), Expect = 2.7e-68, P = 2.7e-68
 Identities = 132/166 (79%), Positives = 149/166 (89%)

Query:    67 SKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRS 126
             +KV VEPHRHEGVFI +GKEDALVTKN+V GE+VY EKRI+V+ E  TK+EYR WNPFRS
Sbjct:    80 AKVTVEPHRHEGVFICRGKEDALVTKNMVIGESVYGEKRINVE-EGETKIEYRAWNPFRS 138

Query:   127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN 186
             KLAAA+LGG+D I IKPG +V+YLGAASGTTVSHVSDIVGP G+VYAVEFSHRSGRDL+N
Sbjct:   139 KLAAAILGGIDQIHIKPGVKVMYLGAASGTTVSHVSDIVGPEGLVYAVEFSHRSGRDLLN 198

Query:   187 MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCL 232
             +AKKRTN+IPIIEDARHP KYRMLVGMVDVIF+DVAQPDQ   + L
Sbjct:   199 VAKKRTNIIPIIEDARHPHKYRMLVGMVDVIFADVAQPDQTRIVAL 244

GO:0003723 "RNA binding" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

UNIPROTKB|F1MM59 FBL "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
 Identities = 130/164 (79%), Positives = 147/164 (89%)

Query:    69 VVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKL 128
             V+VEPHRHEGVFI +GKEDALVTKNLV GE+VY EKR+S+   D  K+EYR WNPFRSKL
Sbjct:    87 VMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSISEGDD-KIEYRAWNPFRSKL 145

Query:   129 AAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA 188
             AAA+LGGVD I IKPGA+VLYLGAASGTTVSHVSDIVGP+G+VYAVEFSHRSGRDL+N+A
Sbjct:   146 AAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLA 205

Query:   189 KKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCL 232
             KKRTN+IP+IEDARHP KYRML+ MVDVIF+DVAQPDQ   + L
Sbjct:   206 KKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVAL 249

GO:0016074 "snoRNA metabolic process" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

GO:0001652 "granular component" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|F1PQN3 FBL "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
 Identities = 130/164 (79%), Positives = 147/164 (89%)

Query:    69 VVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKL 128
             V+VEPHRHEGVFI +GKEDALVTKNLV GE+VY EKR+S+   D  K+EYR WNPFRSKL
Sbjct:    78 VMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSISEGDD-KIEYRAWNPFRSKL 136

Query:   129 AAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA 188
             AAA+LGGVD I IKPGA+VLYLGAASGTTVSHVSDIVGP+G+VYAVEFSHRSGRDL+N+A
Sbjct:   137 AAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLA 196

Query:   189 KKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCL 232
             KKRTN+IP+IEDARHP KYRML+ MVDVIF+DVAQPDQ   + L
Sbjct:   197 KKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVAL 240

GO:0016074 "snoRNA metabolic process" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

GO:0001652 "granular component" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|P22087 FBL "rRNA 2'-O-methyltransferase fibrillarin" [Homo sapiens (taxid:9606)]

 Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
 Identities = 130/164 (79%), Positives = 147/164 (89%)

Query:    69 VVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKL 128
             V+VEPHRHEGVFI +GKEDALVTKNLV GE+VY EKR+S+   D  K+EYR WNPFRSKL
Sbjct:    86 VMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSISEGDD-KIEYRAWNPFRSKL 144

Query:   129 AAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA 188
             AAA+LGGVD I IKPGA+VLYLGAASGTTVSHVSDIVGP+G+VYAVEFSHRSGRDL+N+A
Sbjct:   145 AAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLA 204

Query:   189 KKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCL 232
             KKRTN+IP+IEDARHP KYRML+ MVDVIF+DVAQPDQ   + L
Sbjct:   205 KKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVAL 248

GO:0008033 "tRNA processing" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0001652 "granular component" evidence=IEA

GO:0016074 "snoRNA metabolic process" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0031428 "box C/D snoRNP complex" evidence=NAS

GO:0015030 "Cajal body" evidence=IDA

UNIPROTKB|I3L5T3 FBL "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
 Identities = 130/164 (79%), Positives = 147/164 (89%)

Query:    69 VVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKL 128
             V+VEPHRHEGVFI +GKEDALVTKNLV GE+VY EKR+S+   D  K+EYR WNPFRSKL
Sbjct:   117 VMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSISEGDD-KIEYRAWNPFRSKL 175

Query:   129 AAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA 188
             AAA+LGGVD I IKPGA+VLYLGAASGTTVSHVSDIVGP+G+VYAVEFSHRSGRDL+N+A
Sbjct:   176 AAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLA 235

Query:   189 KKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCL 232
             KKRTN+IP+IEDARHP KYRML+ MVDVIF+DVAQPDQ   + L
Sbjct:   236 KKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVAL 279

GO:0016074 "snoRNA metabolic process" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

GO:0001652 "granular component" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

MGI|MGI:95486 Fbl "fibrillarin" [Mus musculus (taxid:10090)]

 Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
 Identities = 130/164 (79%), Positives = 147/164 (89%)

Query:    69 VVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKL 128
             V+VEPHRHEGVFI +GKEDALVTKNLV GE+VY EKR+S+   D  K+EYR WNPFRSKL
Sbjct:    92 VMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSISEGDD-KIEYRAWNPFRSKL 150

Query:   129 AAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA 188
             AAA+LGGVD I IKPGA+VLYLGAASGTTVSHVSDIVGP+G+VYAVEFSHRSGRDL+N+A
Sbjct:   151 AAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLA 210

Query:   189 KKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCL 232
             KKRTN+IP+IEDARHP KYRML+ MVDVIF+DVAQPDQ   + L
Sbjct:   211 KKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVAL 254

GO:0001651 "dense fibrillar component" evidence=ISO

GO:0001652 "granular component" evidence=IDA

GO:0003723 "RNA binding" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO;ISS;IDA

GO:0006364 "rRNA processing" evidence=TAS

GO:0006396 "RNA processing" evidence=ISO

GO:0008033 "tRNA processing" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0015030 "Cajal body" evidence=ISO;IDA;TAS

GO:0016074 "snoRNA metabolic process" evidence=IMP

GO:0016740 "transferase activity" evidence=IEA

GO:0030515 "snoRNA binding" evidence=TAS

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0032259 "methylation" evidence=IEA

RGD|1305542 Fbl "fibrillarin" [Rattus norvegicus (taxid:10116)]

 Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
 Identities = 130/164 (79%), Positives = 147/164 (89%)

Query:    69 VVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKL 128
             V+VEPHRHEGVFI +GKEDALVTKNLV GE+VY EKR+S+   D  K+EYR WNPFRSKL
Sbjct:    92 VMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSISEGDD-KIEYRAWNPFRSKL 150

Query:   129 AAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA 188
             AAA+LGGVD I IKPGA+VLYLGAASGTTVSHVSDIVGP+G+VYAVEFSHRSGRDL+N+A
Sbjct:   151 AAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLA 210

Query:   189 KKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCL 232
             KKRTN+IP+IEDARHP KYRML+ MVDVIF+DVAQPDQ   + L
Sbjct:   211 KKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVAL 254

GO:0001651 "dense fibrillar component" evidence=IDA

GO:0001652 "granular component" evidence=ISO

GO:0003723 "RNA binding" evidence=IDA

GO:0005730 "nucleolus" evidence=ISO

GO:0006364 "rRNA processing" evidence=IEA

GO:0006396 "RNA processing" evidence=IDA

GO:0008033 "tRNA processing" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0015030 "Cajal body" evidence=ISO

GO:0016074 "snoRNA metabolic process" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P22509	FBRL_RAT	2, ., 1, ., 1, ., -	0.7751	0.6363	0.5137	yes	no
P15646	FBRL_YEAST	2, ., 1, ., 1, ., -	0.7192	0.625	0.5045	yes	no
Q6FN88	FBRL_CANGA	2, ., 1, ., 1, ., -	0.7093	0.6212	0.5077	yes	no
P22087	FBRL_HUMAN	2, ., 1, ., 1, ., -	0.7751	0.6363	0.5233	yes	no
Q9W1V3	FBRL_DROME	2, ., 1, ., 1, ., -	0.7974	0.5946	0.4563	yes	no
P35550	FBRL_MOUSE	2, ., 1, ., 1, ., -	0.7751	0.6363	0.5137	yes	no
P35551	FBRL_SCHPO	2, ., 1, ., 1, ., -	0.7951	0.6287	0.5442	yes	no
Q8SR42	FBRL_ENCCU	2, ., 1, ., 1, ., -	0.5929	0.7386	0.6701	yes	no
Q9FEF8	MD36B_ARATH	2, ., 1, ., 1, ., -	0.9235	0.6439	0.5519	yes	no
Q22053	FBRL_CAEEL	2, ., 1, ., 1, ., -	0.7378	0.6174	0.4630	yes	no
Q756P0	FBRL_ASHGO	2, ., 1, ., 1, ., -	0.7076	0.625	0.5061	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	FIB1	FIB1 (FIBRILLARIN 1); snoRNA binding; encodes a fibrillarin, a key nucleolar protein in eukaryotes which associates with box C/D small nucleolar RNAs (snoRNAs) directing 2'-O-ribose methylation of the rRNA. This gene also encodes a novel box C/D snoRNA, U60.1f in its fifth intron that accumulates in seedlings and that their targeted residue on the 25 S rRNA is methylated. ; Involved in pre-rRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'- hydroxyl methylation of ribose moieties in pre-ribosomal RNA. Site specificity is provided by a gu [...] (308 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	NOP56	NOP56 (Arabidopsis homolog of nucleolar protein Nop56); NOP56-like protein (522 aa)	•		•	•	•		•		0.964
	AT3G03920	Gar1 RNA-binding region family protein; Gar1 RNA-binding region family protein; FUNCTIONS IN- R [...] (202 aa)				•	•		•		0.950
	NAP57	NAP57 (Arabidopsis thaliana homologue of NAP57); pseudouridine synthase; Encodes a putative pse [...] (565 aa)	•			•	•		•		0.943
	DL3925W	RNA binding / protein binding; RNA binding / protein binding; FUNCTIONS IN- protein binding, RN [...] (187 aa)				•			•		0.918
	AT1G15440	transducin family protein / WD-40 repeat family protein; transducin family protein / WD-40 repe [...] (900 aa)				•	•		•		0.914
	AT1G25260	acidic ribosomal protein P0-related; acidic ribosomal protein P0-related; FUNCTIONS IN- structu [...] (235 aa)				•					0.910
	AT4G12600	ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; ribosomal protein L7Ae/L30e/S12e/Gadd45 [...] (128 aa)				•	•		•		0.902
	AT2G19540	transducin family protein / WD-40 repeat family protein; transducin family protein / WD-40 repe [...] (469 aa)				•			•		0.892
	AT2G40360	transducin family protein / WD-40 repeat family protein; transducin family protein / WD-40 repe [...] (753 aa)				•	•		•		0.877
	ATNUC-L1	ATNUC-L1; nucleic acid binding / nucleotide binding; Encodes the predominant form of the two nu [...] (557 aa)				•			•		0.869

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	264
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	1e-115
pfam01269	229	pfam01269, Fibrillarin, Fibrillarin	1e-112
COG1889	231	COG1889, NOP1, Fibrillarin-like rRNA methylase [Tr	1e-83
PRK04266	226	PRK04266, PRK04266, fibrillarin; Provisional	2e-73
pfam05918	543	pfam05918, API5, Apoptosis inhibitory protein 5 (A	3e-07
PRK06958	182	PRK06958, PRK06958, single-stranded DNA-binding pr	9e-07
PRK06958	182	PRK06958, PRK06958, single-stranded DNA-binding pr	1e-06
PHA00370	297	PHA00370, III, attachment protein	4e-06
PRK10590	456	PRK10590, PRK10590, ATP-dependent RNA helicase Rhl	1e-05
PRK06958	182	PRK06958, PRK06958, single-stranded DNA-binding pr	2e-05
PRK10590	456	PRK10590, PRK10590, ATP-dependent RNA helicase Rhl	9e-05
PRK11634	629	PRK11634, PRK11634, ATP-dependent RNA helicase Dea	9e-05
PRK11634	629	PRK11634, PRK11634, ATP-dependent RNA helicase Dea	1e-04
PRK11634	629	PRK11634, PRK11634, ATP-dependent RNA helicase Dea	1e-04
PRK10590	456	PRK10590, PRK10590, ATP-dependent RNA helicase Rhl	2e-04
PRK11634	629	PRK11634, PRK11634, ATP-dependent RNA helicase Dea	2e-04
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	2e-04
PRK06341	166	PRK06341, PRK06341, single-stranded DNA-binding pr	2e-04
PRK10590	456	PRK10590, PRK10590, ATP-dependent RNA helicase Rhl	3e-04
PRK11634	629	PRK11634, PRK11634, ATP-dependent RNA helicase Dea	4e-04
PRK04537	572	PRK04537, PRK04537, ATP-dependent RNA helicase Rhl	4e-04
PRK14902	444	PRK14902, PRK14902, 16S rRNA methyltransferase B;	4e-04
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	5e-04
pfam07172	91	pfam07172, GRP, Glycine rich protein family	7e-04
pfam07172	91	pfam07172, GRP, Glycine rich protein family	0.001
COG0144	355	COG0144, Sun, tRNA and rRNA cytosine-C5-methylases	0.001
COG1512	271	COG1512, COG1512, Beta-propeller domains of methan	0.001
COG1512	271	COG1512, COG1512, Beta-propeller domains of methan	0.001
PRK12678	672	PRK12678, PRK12678, transcription termination fact	0.001
PRK12678	672	PRK12678, PRK12678, transcription termination fact	0.002
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.002
TIGR00438	188	TIGR00438, rrmJ, cell division protein FtsJ	0.002
PRK12678	672	PRK12678, PRK12678, transcription termination fact	0.003
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.003
PRK11634	629	PRK11634, PRK11634, ATP-dependent RNA helicase Dea	0.004
PRK12678	672	PRK12678, PRK12678, transcription termination fact	0.004
PRK12678	672	PRK12678, PRK12678, transcription termination fact	0.004
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.004
PRK10930	419	PRK10930, PRK10930, FtsH protease regulator HflK;	0.004
smart00157	218	smart00157, PRP, Major prion protein	0.004

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score =  332 bits (854), Expect = e-115
 Identities = 167/221 (75%), Positives = 184/221 (83%), Gaps = 8/221 (3%)

Query: 8   GGGGGFRGGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGR-GRGGGGMKGG 66
           G GGGF GGRG G G G GGGRGGGG  GG      RGGGRG GRGGG  GRGGGG  G 
Sbjct: 1   GMGGGFGGGRGGGRGGGGGGGRGGGGRGGG------RGGGRGRGRGGGGGGRGGGGGGGP 54

Query: 67  SKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGT-KVEYRIWNPFR 125
            KV+V PHR  GVFIAKGK DALVTKN+V GE+VY EKRISV++ +G  K+EYR+WNPFR
Sbjct: 55  GKVIVVPHRFPGVFIAKGKSDALVTKNMVPGESVYGEKRISVEDAEGGEKIEYRVWNPFR 114

Query: 126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLV 185
           SKLAAA++GGV NI IKPG++VLYLGAASGTTVSHVSD+VGP GVVYAVEFSHRSGRDL 
Sbjct: 115 SKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLT 174

Query: 186 NMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ 226
           NMAKKR N++PIIEDAR+P KYRMLV MVDVIF+DVAQPDQ
Sbjct: 175 NMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADVAQPDQ 215

Length = 293

>gnl|CDD|201699 pfam01269, Fibrillarin, Fibrillarin

 Score =  322 bits (828), Expect = e-112
 Identities = 120/157 (76%), Positives = 138/157 (87%), Gaps = 2/157 (1%)

Query: 71  VEPH-RHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLA 129
           VEPH RHEGV+I +G  DAL TKNLV G++VY EKRI V+ E+  K+EYR+WNPFRSKLA
Sbjct: 1   VEPHERHEGVYIVRGDGDALATKNLVPGKSVYGEKRIKVEGEEM-KIEYRVWNPFRSKLA 59

Query: 130 AAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK 189
           AA+L G+DNI IKPG++VLYLGAASGTTVSHVSDIVGP GVVYAVEFS R GR+L+NMAK
Sbjct: 60  AAILKGLDNIPIKPGSKVLYLGAASGTTVSHVSDIVGPEGVVYAVEFSPRVGRELINMAK 119

Query: 190 KRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ 226
           KR N++PI+EDARHP KYRMLV MVDVIF+DVAQPDQ
Sbjct: 120 KRPNIVPILEDARHPQKYRMLVEMVDVIFADVAQPDQ 156

Length = 229

>gnl|CDD|224801 COG1889, NOP1, Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

 Score =  249 bits (638), Expect = 1e-83
 Identities = 102/164 (62%), Positives = 123/164 (75%), Gaps = 9/164 (5%)

Query: 66  GSKVVVEPH-RHEGVFIAKGKE--DALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWN 122
           G+ V V+PH R EGV+I + K+  D L TKNLV GE VY E+ I V+ E     EYR WN
Sbjct: 1   GAMVEVKPHERFEGVYIVRFKDGSDRLATKNLVPGERVYGERIIKVEGE-----EYREWN 55

Query: 123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGR 182
           P RSKLAAA+L G+ N  IK G++VLYLGAASGTTVSHVSDIVG  G +YAVEFS R  R
Sbjct: 56  PRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMR 114

Query: 183 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ 226
           +L+++A+KR N+IPI+EDAR P KYR LV  VDVI+ DVAQP+Q
Sbjct: 115 ELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQDVAQPNQ 158

Length = 231

>gnl|CDD|235267 PRK04266, PRK04266, fibrillarin; Provisional

 Score =  223 bits (570), Expect = 2e-73
 Identities = 87/160 (54%), Positives = 109/160 (68%), Gaps = 8/160 (5%)

Query: 70  VVEPHRHEGVFI--AKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSK 127
           V +    EGV+    +     L TKNLV G+ VY E+ I  +      VEYR WNP RSK
Sbjct: 2   VKKKEIFEGVYEVEFEDGSKRLATKNLVPGKRVYGERLIKWEG-----VEYREWNPRRSK 56

Query: 128 LAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNM 187
           LAAA+L G+ N  IK G++VLYLGAASGTTVSHVSDIV   GVVYAVEF+ R  R+L+ +
Sbjct: 57  LAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEV 115

Query: 188 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQV 227
           A++R N+IPI+ DAR P +Y  +V  VDVI+ DVAQP+Q 
Sbjct: 116 AEERKNIIPILADARKPERYAHVVEKVDVIYQDVAQPNQA 155

Length = 226

>gnl|CDD|218811 pfam05918, API5, Apoptosis inhibitory protein 5 (API5)

 Score = 50.8 bits (121), Expect = 3e-07
 Identities = 24/68 (35%), Positives = 27/68 (39%), Gaps = 15/68 (22%)

Query: 2   RPPRGRGGGGGFRGGRGDGG----------GRGRGGGRGGGGGRGGGSAMRGRGGGRGGG 51
           RP  G+G     +  R              G  + G   GG GR      RGRG G GGG
Sbjct: 479 RPANGKGNNVPAKKSRPSNDQKQYVNKSGEGISKVGQSYGGRGRT-----RGRGRGGGGG 533

Query: 52  RGGGRGRG 59
           RG G  RG
Sbjct: 534 RGRGYNRG 541

This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterized by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in human chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors. Length = 543

>gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional

 Score = 47.9 bits (114), Expect = 9e-07
 Identities = 32/57 (56%), Positives = 32/57 (56%), Gaps = 4/57 (7%)

Query: 6   GRGGGGGFRGGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGRGRGGGG 62
           GRGG GG  GG GD GG G GGG GGGG  G     R  GGG     GGG G GGG 
Sbjct: 110 GRGGSGG-GGGGGDEGGYGGGGGGGGGGYGGE---SRSGGGGGRASGGGGGGAGGGA 162

Length = 182

>gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 28/53 (52%), Positives = 28/53 (52%)

Query: 15  GGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGRGRGGGGMKGGS 67
           GGRG  GG G GG  GG GG GGG      G  R GG GG    GGGG  GG 
Sbjct: 109 GGRGGSGGGGGGGDEGGYGGGGGGGGGGYGGESRSGGGGGRASGGGGGGAGGG 161

Length = 182

>gnl|CDD|164795 PHA00370, III, attachment protein

 Score = 46.4 bits (110), Expect = 4e-06
 Identities = 30/78 (38%), Positives = 34/78 (43%)

Query: 16  GRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGRGRGGGGMKGGSKVVVEPHR 75
           G G G G    GG  GGG  GGGS     GG  GGG  GG   GG   K  +K  V    
Sbjct: 86  GGGTGEGGSDTGGDTGGGNTGGGSGGGDTGGSGGGGSDGGGSEGGSTGKSLTKEGVGAGD 145

Query: 76  HEGVFIAKGKEDALVTKN 93
            +   +A   +DAL   N
Sbjct: 146 FDYPKMANANKDALTEDN 163

Length = 297

>gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 6   GRGGGGGFRGGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGRGRGGGGMKG 65
           GR   GG  GGRG GGGRG+  G+   G  G  SA            G  +  G    + 
Sbjct: 390 GRQQRGG--GGRGQGGGRGQQQGQPRRGEGGAKSASAKPAEKPSRRLGDAKPAGEQQRRR 447

Query: 66  GSK 68
             +
Sbjct: 448 RPR 450

Length = 456

>gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 29/55 (52%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 2   RPPRGRGGGGGFRGGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGR 56
           R   G GGGGG  GG G GGG G GGG GG    GGG      GGG G G G  R
Sbjct: 111 RGGSGGGGGGGDEGGYG-GGGGGGGGGYGGESRSGGGGGRASGGGGGGAGGGASR 164

Length = 182

>gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional

 Score = 42.9 bits (101), Expect = 9e-05
 Identities = 19/59 (32%), Positives = 22/59 (37%), Gaps = 3/59 (5%)

Query: 2   RPPRGRGGGGGFRGGRGDGGGRGR--GGGRGGGGGRGGGSAMRGRGGGRGGGRGGGRGR 58
           R  RG GG G   GGRG   G+ R   GG      +      R  G  +  G    R R
Sbjct: 391 RQQRGGGGRGQ-GGGRGQQQGQPRRGEGGAKSASAKPAEKPSRRLGDAKPAGEQQRRRR 448

Length = 456

>gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional

 Score = 43.3 bits (102), Expect = 9e-05
 Identities = 21/50 (42%), Positives = 21/50 (42%), Gaps = 4/50 (8%)

Query: 10  GGGFRGGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGRGRG 59
           GG  RGG    GG  R GGR   G R  G    GRG GR        GR 
Sbjct: 568 GGERRGGGRGFGGERREGGRNFSGERREG----GRGDGRRFSGERREGRA 613

Length = 629

>gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 18/54 (33%), Positives = 18/54 (33%)

Query: 7   RGGGGGFRGGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGRGRGG 60
             GG    GGRG GG R  GG    G  R GG     R  G        R    
Sbjct: 566 HTGGERRGGGRGFGGERREGGRNFSGERREGGRGDGRRFSGERREGRAPRRDDS 619

Length = 629

>gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 22/53 (41%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 6   GRGGGGGFRGGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGRGR 58
            RGGG GF G R +GG R   G R  GG   G      R  GR   R    GR
Sbjct: 571 RRGGGRGFGGERREGG-RNFSGERREGGRGDGRRFSGERREGRAPRRDDSTGR 622

Length = 629

>gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 14  RGGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGRGRGGGGMKGGSKVVVEP 73
           R  RG GGGRG+GGGRG   G+        +           R  G     G  +    P
Sbjct: 391 RQQRG-GGGRGQGGGRGQQQGQPRRGEGGAKSASAKPAEKPSRRLGDAKPAGEQQRRRRP 449

Query: 74  HR 75
            +
Sbjct: 450 RK 451

Length = 456

>gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 20/49 (40%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 13  FRGGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGRGRGGG 61
             GG   GGGRG GG R  GG R      R  G G G    G R  G  
Sbjct: 566 HTGGERRGGGRGFGGERREGG-RNFSGERREGGRGDGRRFSGERREGRA 613

Length = 629

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 25/121 (20%), Positives = 46/121 (38%), Gaps = 19/121 (15%)

Query: 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR------TNV 194
           +K G +VL LG  +G     +++ +GP   V  ++ S     + +  AK+        NV
Sbjct: 1   LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDIS----EEAIEKAKENAKKLGYENV 56

Query: 195 IPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCLILFQPIVINNLQSVNNETKGGI 254
             I  D     + ++     DV+ S+         L  +     V+  +  V     GG+
Sbjct: 57  EFIQGDIEELPQLQLEDNSFDVVISN-------EVLNHLPDPDKVLEEIIRV--LKPGGV 107

Query: 255 F 255
            
Sbjct: 108 L 108

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|235782 PRK06341, PRK06341, single-stranded DNA-binding protein; Provisional

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 20/44 (45%), Positives = 21/44 (47%)

Query: 15  GGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGRGR 58
            GRG+GGG G GG  GGGG  G     RG       G GG   R
Sbjct: 115 DGRGEGGGGGGGGDDGGGGDFGSSGPSRGGPRPASSGGGGNFSR 158

Length = 166

>gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 18/57 (31%), Positives = 21/57 (36%)

Query: 19  DGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGRGRGGGGMKGGSKVVVEPHR 75
           +G  +  GGGRG GGGRG       RG G                 G +K   E  R
Sbjct: 389 NGRQQRGGGGRGQGGGRGQQQGQPRRGEGGAKSASAKPAEKPSRRLGDAKPAGEQQR 445

Length = 456

>gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 23/45 (51%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 21  GGRGRGGGRG-GGGGRGGGSAMRG--RGGGRGGGRGGGRGRGGGG 62
           GG  RGGGRG GG  R GG    G  R GGRG GR     R  G 
Sbjct: 568 GGERRGGGRGFGGERREGGRNFSGERREGGRGDGRRFSGERREGR 612

Length = 629

>gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional

 Score = 41.1 bits (96), Expect = 4e-04
 Identities = 22/73 (30%), Positives = 26/73 (35%)

Query: 14  RGGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGRGRGGGGMKGGSKVVVEP 73
           RGG   G G G   G  GGGGR  G+   G+   R   R  G             V    
Sbjct: 432 RGGGRSGPGGGSRSGSVGGGGRRDGAGADGKPRPRRKPRVEGEADAAAAGAETPVVAAAA 491

Query: 74  HRHEGVFIAKGKE 86
            +  GV  A G+ 
Sbjct: 492 AQAPGVVAADGER 504

Length = 572

>gnl|CDD|237857 PRK14902, PRK14902, 16S rRNA methyltransferase B; Provisional

 Score = 40.9 bits (97), Expect = 4e-04
 Identities = 38/151 (25%), Positives = 59/151 (39%), Gaps = 28/151 (18%)

Query: 77  EGVFIAKGK--EDALV-TKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVL 133
           EG  + +     +ALV  K  +AG  ++ +  I++Q+E              S L A  L
Sbjct: 200 EGYEVEESLLSPEALVIEKGNIAGTDLFKDGLITIQDES-------------SMLVAPAL 246

Query: 134 GGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-- 191
                   K G  VL   AA G   +H+++++   G V A++  H     L+    KR  
Sbjct: 247 D------PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDI-HEHKLKLIEENAKRLG 299

Query: 192 -TNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221
            TN+     DAR   +        D I  D 
Sbjct: 300 LTNIETKALDARKVHEK--FAEKFDKILVDA 328

Length = 444

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 29/59 (49%), Positives = 30/59 (50%), Gaps = 7/59 (11%)

Query: 9   GGGGFRGGRGDGGGRGRGGGRGGGGGRG------GGSAMRGRGGGRGGGRGGGRGRGGG 61
            GGGF G R DGGG G GG   GG G          +A RG GGG G   GG   RGGG
Sbjct: 79  AGGGFGGRRFDGGG-GFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLFGGLFNRGGG 136

Length = 392

>gnl|CDD|219320 pfam07172, GRP, Glycine rich protein family

 Score = 37.8 bits (88), Expect = 7e-04
 Identities = 28/48 (58%), Positives = 28/48 (58%)

Query: 19 DGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGRGRGGGGMKGG 66
          D  G G GG  GGGGG  GG    G GGG GGG GG  G GGGG  GG
Sbjct: 43 DKYGGGGGGYGGGGGGGYGGGGYYGGGGGYGGGGGGYPGGGGGGYGGG 90

This family of proteins includes several glycine rich proteins as well as two nodulins 16 and 24. The family also contains proteins that are induced in response to various stresses. Length = 91

>gnl|CDD|219320 pfam07172, GRP, Glycine rich protein family

 Score = 37.0 bits (86), Expect = 0.001
 Identities = 28/48 (58%), Positives = 28/48 (58%)

Query: 13 FRGGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGRGRGG 60
            GG G G G G GGG GGGG  GGG    G GGG  GG GGG G GG
Sbjct: 44 KYGGGGGGYGGGGGGGYGGGGYYGGGGGYGGGGGGYPGGGGGGYGGGG 91

This family of proteins includes several glycine rich proteins as well as two nodulins 16 and 24. The family also contains proteins that are induced in response to various stresses. Length = 91

>gnl|CDD|223222 COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNG-VVYAVEFSHRSGRDL 184
           S+L A VL        KPG RVL L AA G   +H+++++   G +V AV+ S +  + L
Sbjct: 145 SQLPALVLD------PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRL 198

Query: 185 VNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221
               K+    NVI + +DAR  A+        D I  D 
Sbjct: 199 RENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRILLDA 237

Length = 355

>gnl|CDD|224429 COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 24/61 (39%), Positives = 24/61 (39%), Gaps = 7/61 (11%)

Query: 5   RGRGGGGGFRGGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGRGRGGGGMK 64
               G    R   G  G R R  G GG GG GG       G   GG  GGG   GGGG  
Sbjct: 216 SLYLGRQPDRWLNGVLGRRRRSSGSGGSGGSGG-------GSSGGGFSGGGGSSGGGGAS 268

Query: 65  G 65
           G
Sbjct: 269 G 269

Length = 271

>gnl|CDD|224429 COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 18/56 (32%), Positives = 19/56 (33%), Gaps = 4/56 (7%)

Query: 1   MRPPRGRGGGGGFRGGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGR 56
           +     R   G     R   G     GG GG GG   G    G GG  GGG   G 
Sbjct: 219 LGRQPDRWLNGVLGRRRRSSGS----GGSGGSGGGSSGGGFSGGGGSSGGGGASGS 270

Length = 271

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 20/55 (36%), Positives = 20/55 (36%)

Query: 2   RPPRGRGGGGGFRGGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGR 56
           R  R           R D G R    G G GG RG     R R G RGG  G  R
Sbjct: 229 RRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDGGNER 283

Length = 672

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 39.1 bits (92), Expect = 0.002
 Identities = 18/60 (30%), Positives = 18/60 (30%)

Query: 2   RPPRGRGGGGGFRGGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGRGRGGG 61
           R  R   G      GR DGG R     R       G      RG   G    G  GR G 
Sbjct: 205 RRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGR 264

Length = 672

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 39.5 bits (93), Expect = 0.002
 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 8/68 (11%)

Query: 7   RGGGGGFRGGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGR--------GR 58
               G  +G +G GG      G+ G  G+G     +G+GG  G G    R        GR
Sbjct: 616 NAQRGEQQGQQGQGGQGQGQPGQQGQQGQGQQQGQQGQGGQGGQGSLAERQQALRDELGR 675

Query: 59  GGGGMKGG 66
             GG+ G 
Sbjct: 676 QRGGLPGM 683

Length = 820

>gnl|CDD|232976 TIGR00438, rrmJ, cell division protein FtsJ

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 35/87 (40%), Positives = 37/87 (42%), Gaps = 14/87 (16%)

Query: 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIED 200
           IKPG  VL LGAA G       + VG  G V AV        DL  M K   NV  I  D
Sbjct: 30  IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAV--------DLQPM-KPIENVDFIRGD 80

Query: 201 ARHPA---KYRMLVG--MVDVIFSDVA 222
                   K R  VG   VDV+ SD A
Sbjct: 81  FTDEEVLNKIRERVGDDKVDVVMSDAA 107

Methylates the 23S rRNA. Previously known as cell division protein ftsJ.// Trusted cutoff too high? [SS 10/1/04] [Protein synthesis, tRNA and rRNA base modification]. Length = 188

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 38.7 bits (91), Expect = 0.003
 Identities = 19/59 (32%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 5   RGRGGGGGFRGGRGDGGGRGRGGGRGGGGGRGG-GSAMRGRGGGRGGGRGGGRGRGGGG 62
           R  G   G R  R     RG       G   G  G    GR G R   R     RGG G
Sbjct: 221 RDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDG 279

Length = 672

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 38.7 bits (91), Expect = 0.003
 Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 6/62 (9%)

Query: 7   RGGGGGFRGGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGRGRGGGGMKGG 66
           R     F   RG+  G+   GG+G G     G        G+G  +G     G GG    
Sbjct: 609 RDLQEQFNAQRGEQQGQQGQGGQGQGQPGQQG------QQGQGQQQGQQGQGGQGGQGSL 662

Query: 67  SK 68
           ++
Sbjct: 663 AE 664

Length = 820

>gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional

 Score = 37.9 bits (88), Expect = 0.004
 Identities = 21/52 (40%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 18  GDGGGRGRGGGRGGGGGRGGGSAMRGRGGG---RGGGRGGGRGRGGGGMKGG 66
           GD      G  RGGG G GG     GR      R GGRG GR   G   +G 
Sbjct: 561 GDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGRGDGRRFSGERREGR 612

Length = 629

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 38.0 bits (89), Expect = 0.004
 Identities = 14/61 (22%), Positives = 15/61 (24%)

Query: 2   RPPRGRGGGGGFRGGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGRGRGGG 61
           R  R   G  G    R D   +G      G    G     R R   R       R   G 
Sbjct: 190 RGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGD 249

Query: 62  G 62
            
Sbjct: 250 R 250

Length = 672

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 38.0 bits (89), Expect = 0.004
 Identities = 18/60 (30%), Positives = 20/60 (33%)

Query: 1   MRPPRGRGGGGGFRGGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGRGRGG 60
            R  R +G     RG R  G  RGR   R     RG  +           G G G  RG 
Sbjct: 205 RRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGR 264

Length = 672

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 38.0 bits (89), Expect = 0.004
 Identities = 19/75 (25%), Positives = 23/75 (30%), Gaps = 9/75 (12%)

Query: 1   MRPPRGRGGGGGFRGGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGG---------RGGG 51
               RG   G   +GG+G G    +G    G      G   +G  G             G
Sbjct: 615 FNAQRGEQQGQQGQGGQGQGQPGQQGQQGQGQQQGQQGQGGQGGQGSLAERQQALRDELG 674

Query: 52  RGGGRGRGGGGMKGG 66
           R  G   G GG  G 
Sbjct: 675 RQRGGLPGMGGEAGE 689

Length = 820

>gnl|CDD|236799 PRK10930, PRK10930, FtsH protease regulator HflK; Provisional

 Score = 37.9 bits (88), Expect = 0.004
 Identities = 26/69 (37%), Positives = 32/69 (46%)

Query: 2  RPPRGRGGGGGFRGGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGRGRGGG 61
          R P G    GG  GG G+ GGR +G        R     + G GGG+G G GGG    G 
Sbjct: 13 RDPWGSSKPGGNSGGNGNKGGRDQGPPDLDDIFRKLSKKLGGLGGGKGTGSGGGSSSQGP 72

Query: 62 GMKGGSKVV 70
            + G +VV
Sbjct: 73 RPQLGGRVV 81

Length = 419

>gnl|CDD|197548 smart00157, PRP, Major prion protein

 Score = 37.2 bits (86), Expect = 0.004
 Identities = 26/69 (37%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 2  RPPRGRGGGGGFRGGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGRGR--- 58
          +P  G   GG    G+G  GG       GG G   GG   +  GGG G   GGG G+   
Sbjct: 5  KPGGGWNTGGSRYPGQGSPGGNRYPPQGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHG 64

Query: 59 GGGGMKGGS 67
          GG G  GG+
Sbjct: 65 GGWGQGGGT 73

The prion protein is a major component of scrapie-associated fibrils in Creutzfeldt-Jakob disease, kuru, Gerstmann-Straussler syndrome and bovine spongiform encephalopathy. Length = 218

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	264
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	100.0
PTZ00146	293	fibrillarin; Provisional	100.0
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	100.0
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	100.0
PRK04266	226	fibrillarin; Provisional	99.92
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.72
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.69
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	99.64
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.62
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.57
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.54
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.53
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	99.51
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.5
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	99.5
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.49
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.47
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.46
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.45
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.45
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.42
COG4123	248	Predicted O-methyltransferase [General function pr	99.41
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.38
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.34
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.33
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	99.32
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.32
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.32
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.31
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.31
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.28
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.28
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	99.26
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.26
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.26
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.26
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.25
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.24
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.24
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.21
COG2265	432	TrmA SAM-dependent methyltransferases related to t	99.2
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.18
PRK14967	223	putative methyltransferase; Provisional	99.18
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	99.17
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.16
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.16
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.16
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.15
PLN02244	340	tocopherol O-methyltransferase	99.15
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.15
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.15
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.14
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.14
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.13
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.13
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.13
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.12
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.11
PRK08317	241	hypothetical protein; Provisional	99.11
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.11
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.1
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.1
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.1
COG2520	341	Predicted methyltransferase [General function pred	99.1
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.1
PRK07402	196	precorrin-6B methylase; Provisional	99.09
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.09
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.08
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.08
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.08
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.07
TIGR00438	188	rrmJ cell division protein FtsJ.	99.07
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.07
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.06
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.06
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.06
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.05
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.05
PRK11207	197	tellurite resistance protein TehB; Provisional	99.05
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.04
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.03
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.03
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.03
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.02
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.01
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.01
PHA03412	241	putative methyltransferase; Provisional	99.0
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.0
COG2890	280	HemK Methylase of polypeptide chain release factor	99.0
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	98.99
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	98.99
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.99
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.99
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	98.98
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	98.97
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	98.96
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	98.96
PRK14968	188	putative methyltransferase; Provisional	98.95
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.95
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.95
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	98.95
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.94
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.93
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.91
PRK10258	251	biotin biosynthesis protein BioC; Provisional	98.91
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	98.91
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.91
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.9
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.9
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.9
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.9
KOG2904	328	consensus Predicted methyltransferase [General fun	98.9
PHA03411	279	putative methyltransferase; Provisional	98.89
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.89
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.88
PRK12335	287	tellurite resistance protein TehB; Provisional	98.88
PRK05785	226	hypothetical protein; Provisional	98.87
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.87
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.86
PLN02336	475	phosphoethanolamine N-methyltransferase	98.86
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.85
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.85
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	98.85
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.84
PLN02336	475	phosphoethanolamine N-methyltransferase	98.83
PLN02490	340	MPBQ/MSBQ methyltransferase	98.83
PRK06922	677	hypothetical protein; Provisional	98.83
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	98.82
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.82
PLN02476	278	O-methyltransferase	98.81
PRK04457	262	spermidine synthase; Provisional	98.81
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.8
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	98.8
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.8
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	98.78
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	98.78
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	98.78
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	98.78
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	98.77
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	98.76
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.76
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.76
PRK13255	218	thiopurine S-methyltransferase; Reviewed	98.76
PRK06202	232	hypothetical protein; Provisional	98.75
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	98.75
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.75
PRK00811	283	spermidine synthase; Provisional	98.74
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.74
PLN03075	296	nicotianamine synthase; Provisional	98.74
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.73
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.72
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.71
COG2521	287	Predicted archaeal methyltransferase [General func	98.7
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.7
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.69
PLN02672	1082	methionine S-methyltransferase	98.68
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.68
COG4122	219	Predicted O-methyltransferase [General function pr	98.67
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.65
PLN02366	308	spermidine synthase	98.65
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.63
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.62
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.61
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.61
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.6
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.59
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	98.59
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.59
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.59
KOG1271	227	consensus Methyltransferases [General function pre	98.58
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.56
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	98.56
PRK03612	521	spermidine synthase; Provisional	98.55
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.54
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.53
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.52
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.51
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.51
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	98.5
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.5
TIGR03438	301	probable methyltransferase. This model represents	98.49
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.49
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.47
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.46
KOG2360	413	consensus Proliferation-associated nucleolar prote	98.45
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.44
PRK10742	250	putative methyltransferase; Provisional	98.44
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	98.43
PRK01581	374	speE spermidine synthase; Validated	98.43
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.41
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.38
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.36
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.34
PRK04148	134	hypothetical protein; Provisional	98.33
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.32
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.26
COG4076	252	Predicted RNA methylase [General function predicti	98.24
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.23
KOG3010	261	consensus Methyltransferase [General function pred	98.22
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	98.16
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.14
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.13
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.13
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.12
PLN02823	336	spermine synthase	98.09
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	98.06
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.05
KOG2361	264	consensus Predicted methyltransferase [General fun	98.04
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	97.97
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.91
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	97.9
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	97.87
KOG4300	252	consensus Predicted methyltransferase [General fun	97.87
KOG2730	263	consensus Methylase [General function prediction o	97.84
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	97.78
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	97.77
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	97.76
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	97.72
KOG2899	288	consensus Predicted methyltransferase [General fun	97.6
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.58
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	97.5
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	97.47
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	97.46
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	97.45
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.4
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	97.39
PF13679	141	Methyltransf_32: Methyltransferase domain	97.38
KOG3973	465	consensus Uncharacterized conserved glycine-rich p	97.34
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	97.32
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	97.31
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	97.29
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	97.23
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.2
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	97.2
COG3897	218	Predicted methyltransferase [General function pred	97.1
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	97.06
COG4798	238	Predicted methyltransferase [General function pred	97.05
KOG2671	421	consensus Putative RNA methylase [Replication, rec	96.88
COG0286	489	HsdM Type I restriction-modification system methyl	96.88
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	96.84
PRK00536	262	speE spermidine synthase; Provisional	96.77
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	96.74
KOG2078	495	consensus tRNA modification enzyme [RNA processing	96.67
KOG1227	351	consensus Putative methyltransferase [General func	96.67
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	96.62
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	96.56
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	96.53
PLN02232	160	ubiquinone biosynthesis methyltransferase	96.5
PTZ00146	293	fibrillarin; Provisional	96.47
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	96.45
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	96.3
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	96.23
COG4262	508	Predicted spermidine synthase with an N-terminal m	96.22
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	96.2
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	96.18
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	96.16
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	96.06
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	96.05
PHA01634	156	hypothetical protein	95.99
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	95.88
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	95.74
KOG2940	325	consensus Predicted methyltransferase [General fun	95.68
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	95.55
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	95.53
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	95.46
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	95.41
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	95.4
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	95.4
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	95.33
KOG3115	249	consensus Methyltransferase-like protein [General	95.28
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	95.26
COG2933	358	Predicted SAM-dependent methyltransferase [General	95.26
PRK11524	284	putative methyltransferase; Provisional	95.06
COG1568	354	Predicted methyltransferases [General function pre	94.92
PRK10458	467	DNA cytosine methylase; Provisional	94.72
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	94.36
PRK13699	227	putative methylase; Provisional	94.33
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	94.29
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	94.08
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	93.97
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	93.84
KOG3924	419	consensus Putative protein methyltransferase invol	93.17
COG2384	226	Predicted SAM-dependent methyltransferase [General	92.85
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	92.79
KOG1501	636	consensus Arginine N-methyltransferase [General fu	92.56
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	92.15
KOG2352	482	consensus Predicted spermine/spermidine synthase [	91.93
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	91.47
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	90.34
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	90.32
TIGR00497	501	hsdM type I restriction system adenine methylase (	90.13
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	89.98
PRK12829	264	short chain dehydrogenase; Provisional	89.79
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	89.61
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	89.39
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	89.17
PLN02896	353	cinnamyl-alcohol dehydrogenase	89.16
KOG4058	199	consensus Uncharacterized conserved protein [Funct	89.06
KOG1331	293	consensus Predicted methyltransferase [General fun	88.97
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	88.92
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	88.84
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	88.71
PRK06138	252	short chain dehydrogenase; Provisional	88.7
PRK05872	296	short chain dehydrogenase; Provisional	88.7
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	88.67
COG1565	370	Uncharacterized conserved protein [Function unknow	88.44
PRK06940	275	short chain dehydrogenase; Provisional	88.25
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	88.15
PRK07454	241	short chain dehydrogenase; Provisional	87.95
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	87.9
PRK05867	253	short chain dehydrogenase; Provisional	87.83
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	87.68
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	87.65
PRK07063	260	short chain dehydrogenase; Provisional	87.65
PRK06139	330	short chain dehydrogenase; Provisional	87.6
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	87.35
PRK12939	250	short chain dehydrogenase; Provisional	87.13
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	87.09
COG3129	292	Predicted SAM-dependent methyltransferase [General	86.97
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	86.88
PLN03209	576	translocon at the inner envelope of chloroplast su	86.49
PTZ00357	1072	methyltransferase; Provisional	86.48
PRK10669	558	putative cation:proton antiport protein; Provision	86.45
PRK06172	253	short chain dehydrogenase; Provisional	86.33
PRK09072	263	short chain dehydrogenase; Provisional	86.28
PLN02214	342	cinnamoyl-CoA reductase	86.17
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	85.9
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	85.77
COG0569	225	TrkA K+ transport systems, NAD-binding component [	85.76
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	85.75
PRK07097	265	gluconate 5-dehydrogenase; Provisional	85.72
PRK07904	253	short chain dehydrogenase; Provisional	85.7
PRK09291	257	short chain dehydrogenase; Provisional	85.64
PRK06194	287	hypothetical protein; Provisional	85.62
PRK08267	260	short chain dehydrogenase; Provisional	85.53
PF06460	299	NSP13: Coronavirus NSP13; InterPro: IPR009461 This	85.52
PRK08339	263	short chain dehydrogenase; Provisional	85.49
PRK06181	263	short chain dehydrogenase; Provisional	85.41
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	85.24
PRK06949	258	short chain dehydrogenase; Provisional	85.17
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	85.06
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	85.06
PRK09496	453	trkA potassium transporter peripheral membrane com	85.05
PRK06124	256	gluconate 5-dehydrogenase; Provisional	85.04
PRK08340	259	glucose-1-dehydrogenase; Provisional	84.95
PRK08226	263	short chain dehydrogenase; Provisional	84.89
PLN02253	280	xanthoxin dehydrogenase	84.72
PRK05650	270	short chain dehydrogenase; Provisional	84.63
PRK07576	264	short chain dehydrogenase; Provisional	84.59
KOG0821	326	consensus Predicted ribosomal RNA adenine dimethyl	84.55
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	84.41
PRK07326	237	short chain dehydrogenase; Provisional	84.09
PRK08324	681	short chain dehydrogenase; Validated	84.04
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	83.89
PRK08589	272	short chain dehydrogenase; Validated	83.74
PRK09496	453	trkA potassium transporter peripheral membrane com	83.58
PRK07677	252	short chain dehydrogenase; Provisional	83.3
KOG2782	303	consensus Putative SAM dependent methyltransferase	83.12
PRK07109	334	short chain dehydrogenase; Provisional	83.08
COG0863	302	DNA modification methylase [DNA replication, recom	82.63
TIGR00853	95	pts-lac PTS system, lactose/cellobiose family IIB	82.61
PRK12937	245	short chain dehydrogenase; Provisional	82.61
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	82.51
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	82.49
PRK07102	243	short chain dehydrogenase; Provisional	82.46
PRK06182	273	short chain dehydrogenase; Validated	82.34
PRK07024	257	short chain dehydrogenase; Provisional	82.31
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	82.23
PRK08643	256	acetoin reductase; Validated	82.08
PRK08862	227	short chain dehydrogenase; Provisional	82.08
PRK07523	255	gluconate 5-dehydrogenase; Provisional	81.99
PRK08265	261	short chain dehydrogenase; Provisional	81.92
PRK06180	277	short chain dehydrogenase; Provisional	81.91
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	81.86
PRK07062	265	short chain dehydrogenase; Provisional	81.8
KOG2920	282	consensus Predicted methyltransferase [General fun	81.71
PRK03562	621	glutathione-regulated potassium-efflux system prot	81.69
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	81.42
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	81.03
PRK06701	290	short chain dehydrogenase; Provisional	80.95
PRK06914	280	short chain dehydrogenase; Provisional	80.88
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	80.79
PRK06125	259	short chain dehydrogenase; Provisional	80.61
PRK09590	104	celB cellobiose phosphotransferase system IIB comp	80.57
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	80.36
PLN02427	386	UDP-apiose/xylose synthase	80.34
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	80.32
COG2961	279	ComJ Protein involved in catabolism of external DN	80.17
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	80.05
PRK05866	293	short chain dehydrogenase; Provisional	80.04
PRK07890	258	short chain dehydrogenase; Provisional	80.03
PRK08628	258	short chain dehydrogenase; Provisional	80.01

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=100.00  E-value=1e-54  Score=369.37  Aligned_cols=180  Identities=83%  Similarity=1.268  Sum_probs=172.3

Q ss_pred             CCCCCCCCCCCceeeecceeeceEEEecCCcccccccccCCCceeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhc
Q 024665           56 RGRGGGGMKGGSKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGG  135 (264)
Q Consensus        56 ~~~~~~~~~~g~k~~i~~~~~~g~~~~~~~~d~l~~~~~~~g~~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~  135 (264)
                      +++..++.++|+||+||||+|+|||++|+|+|+|+|+|++|++++|+|++++++.+++ ++|||+||||+|+|++.|+..
T Consensus        70 ~~~~~~g~~gG~~v~vEPHRh~GVfi~rgkeDaLvTkNlvpge~vYgEkRisv~~~~~-kvEyRVWnPfrSKLAA~I~gG  148 (317)
T KOG1596|consen   70 RGGVAGGIKGGSKVLVEPHRHAGVFIARGKEDALVTKNLVPGESVYGEKRISVENEDG-KVEYRVWNPFRSKLAAGILGG  148 (317)
T ss_pred             cccccccccCCceEEeccccccceEEEcCchhheeecccCCcccccCceEEEeecCCC-cEEEEEeChHHHHHHHHhhcC
Confidence            3333456789999999999999999999999999999999999999999999998754 999999999999999999999


Q ss_pred             ccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCcc
Q 024665          136 VDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVD  215 (264)
Q Consensus       136 l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD  215 (264)
                      +++++++|+++||+||+++|+..+|+++.++|++.|||||+|+++.++|+++|++++||.+|++|++++.+|+|+..++|
T Consensus       149 vdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVD  228 (317)
T KOG1596|consen  149 VDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVD  228 (317)
T ss_pred             ccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCchHHHHHHHHHhC
Q 024665          216 VIFSDVAQPDQVCFLCLILFQ  236 (264)
Q Consensus       216 ~V~~d~p~~~~~~~~~~~~l~  236 (264)
                      +||+|+++|+|+++++||+.+
T Consensus       229 vIFaDvaqpdq~RivaLNA~~  249 (317)
T KOG1596|consen  229 VIFADVAQPDQARIVALNAQY  249 (317)
T ss_pred             EEeccCCCchhhhhhhhhhhh
Confidence            999999999999999999864

>PTZ00146 fibrillarin; Provisional

Probab=100.00  E-value=4.8e-46  Score=330.87  Aligned_cols=172  Identities=74%  Similarity=1.153  Sum_probs=156.6

Q ss_pred             ceeeecceeeceEEEecCCcccccccccCCCceeeeeeEEEEecCCC-ceecceEeCCcchHHHHHHHhcccccCCCCCC
Q 024665           67 SKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDG-TKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGA  145 (264)
Q Consensus        67 ~k~~i~~~~~~g~~~~~~~~d~l~~~~~~~g~~vy~e~~~~v~~~~~-~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~  145 (264)
                      .+|+||||.|+|+|++++++|.|+|+|++|++++|+|+++.++.+++ +.++||+|+||+|||++.|+..+++++++|++
T Consensus        55 ~~~~~~~~~~~gv~~~~~~~~~l~t~n~~pg~~vygek~~~~~~~~~~~~~eyR~w~p~rSKlaa~i~~g~~~l~IkpG~  134 (293)
T PTZ00146         55 GKVIVVPHRFPGVFIAKGKSDALVTKNMVPGESVYGEKRISVEDAEGGEKIEYRVWNPFRSKLAAAIIGGVANIPIKPGS  134 (293)
T ss_pred             CceEEeeeeecCEEEeecCCceeEeecCCCCcccccceEEeeccCCCCCcceeeeeCCcccHHHHHHHCCcceeccCCCC
Confidence            79999999999999999988999999999999999999999986543 68899999999999999999999999999999


Q ss_pred             EEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCCCch
Q 024665          146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPD  225 (264)
Q Consensus       146 ~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~~~  225 (264)
                      +|||||||||++++++|++++++++|||||+++++.+++++.++.++||.+++.|++++..|+++.++||+||+|+++||
T Consensus       135 ~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva~pd  214 (293)
T PTZ00146        135 KVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADVAQPD  214 (293)
T ss_pred             EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEeCCCcc
Confidence            99999999999999999999989999999999999999999998888999999999886666666679999999999999


Q ss_pred             HHHHHHHH---HhCCC
Q 024665          226 QVCFLCLI---LFQPI  238 (264)
Q Consensus       226 ~~~~~~~~---~l~~~  238 (264)
                      +..+..++   .|+|.
T Consensus       215 q~~il~~na~r~LKpG  230 (293)
T PTZ00146        215 QARIVALNAQYFLKNG  230 (293)
T ss_pred             hHHHHHHHHHHhccCC
Confidence            87766654   34555

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=100.00  E-value=1.7e-38  Score=270.01  Aligned_cols=164  Identities=76%  Similarity=1.157  Sum_probs=140.8

Q ss_pred             ecce-eeceEEEecCCcccccccccCCCceeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCCCEEEE
Q 024665           71 VEPH-RHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLY  149 (264)
Q Consensus        71 i~~~-~~~g~~~~~~~~d~l~~~~~~~g~~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~~VLD  149 (264)
                      |||| +|+|+|++++++|.|+|+|++||+++|+|+++.++.. +++.+||+|+||+|||++.|+..++.++++||++||+
T Consensus         1 i~~h~~~~gvy~~~~~~~~l~T~n~~pg~~vYGEk~i~~~~~-~~~~eYR~W~P~RSKLaAai~~Gl~~~~ik~gskVLY   79 (229)
T PF01269_consen    1 IEPHERFEGVYIARGKGDALATKNLVPGESVYGEKRISVEGE-GKKVEYRVWNPFRSKLAAAILKGLENIPIKPGSKVLY   79 (229)
T ss_dssp             -EEEESSTTEEEEETTSTEEEEE-SSTT--SSSSEEEEETTE----EEEEEE-TTT-HHHHHHHTT-S--S--TT-EEEE
T ss_pred             CcceeeecCEEEEecCCCeEEEecCCCCCcccCceeEeecCC-CCccceeecCchhhHHHHHHHcCccccCCCCCCEEEE
Confidence            6899 9999999999999999999999999999999998764 5899999999999999999999999999999999999


Q ss_pred             EcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCCCchHHHH
Q 024665          150 LGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCF  229 (264)
Q Consensus       150 lG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~~~~~~~  229 (264)
                      ||+++|++.+|+|+.++++|.|||||+|+++.+++++.+++++||.+|.+|++.+.+|+++.+++|+|++|+++|+|+.+
T Consensus        80 LGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~DVaQp~Qa~I  159 (229)
T PF01269_consen   80 LGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQDVAQPDQARI  159 (229)
T ss_dssp             ETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE-SSTTHHHH
T ss_pred             ecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEecCCChHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHh
Q 024665          230 LCLILF  235 (264)
Q Consensus       230 ~~~~~l  235 (264)
                      ..+|+.
T Consensus       160 ~~~Na~  165 (229)
T PF01269_consen  160 AALNAR  165 (229)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999994

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1e-34  Score=241.91  Aligned_cols=163  Identities=63%  Similarity=0.926  Sum_probs=154.7

Q ss_pred             ceeeecce-eeceEEEecCCc--ccccccccCCCceeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCC
Q 024665           67 SKVVVEPH-RHEGVFIAKGKE--DALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKP  143 (264)
Q Consensus        67 ~k~~i~~~-~~~g~~~~~~~~--d~l~~~~~~~g~~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~  143 (264)
                      .++.|+|| .++|+|+.+.++  +.|+|+|++||..+|+|+.+.+.++     +||.|+|++|+|++.|++.|+++.+++
T Consensus         2 ~~~~v~~~~~~~gvy~~~~~dg~~~l~T~nl~pg~~VYGE~ii~~~~~-----eYR~Wnp~RSKLaAaIl~Gl~~~pi~~   76 (231)
T COG1889           2 AMVEVKPHERFEGVYIVRFKDGSDRLATKNLVPGERVYGERIIKVEGE-----EYREWNPRRSKLAAAILKGLKNFPIKE   76 (231)
T ss_pred             ceeecccccccCCeEEEEcccccceeeeecCCCCccccCceeEEecCc-----ceeeeCcchhHHHHHHHcCcccCCcCC
Confidence            46789999 699999988654  7899999999999999999999885     899999999999999999999999999


Q ss_pred             CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCCC
Q 024665          144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~  223 (264)
                      +++||+||+++|++.+|+|+.++ .+.|||||+|+++.++++..+.+++||.+|.+||+.+.+|+++.+++|+|+.|++|
T Consensus        77 g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DVAQ  155 (231)
T COG1889          77 GSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQDVAQ  155 (231)
T ss_pred             CCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEEecCC
Confidence            99999999999999999999997 89999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHh
Q 024665          224 PDQVCFLCLILF  235 (264)
Q Consensus       224 ~~~~~~~~~~~l  235 (264)
                      |+|+.+.+.|+.
T Consensus       156 p~Qa~I~~~Na~  167 (231)
T COG1889         156 PNQAEILADNAE  167 (231)
T ss_pred             chHHHHHHHHHH
Confidence            999999999864

>PRK04266 fibrillarin; Provisional

Probab=99.92  E-value=6.5e-24  Score=184.51  Aligned_cols=161  Identities=53%  Similarity=0.799  Sum_probs=132.6

Q ss_pred             cceeeceEEEecCCcc--cccccccCCCceeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCCCEEEE
Q 024665           72 EPHRHEGVFIAKGKED--ALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLY  149 (264)
Q Consensus        72 ~~~~~~g~~~~~~~~d--~l~~~~~~~g~~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~~VLD  149 (264)
                      .||+|+|+|++++++|  .|+|+|++||+.+|++.......     ..|++|+|+++++++.++..++.+.++|+++|||
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~~~r~~~~~~ll~~~~~l~i~~g~~VlD   78 (226)
T PRK04266          4 KKEIFEGVYEVEFEDGSKRLATKNLVPGKRVYGERLIKWEG-----VEYREWNPRRSKLAAAILKGLKNFPIKKGSKVLY   78 (226)
T ss_pred             cccccCCEEEEecCCCcceEeeecCCCCCCCCCceEEecCC-----cEEEEECCCccchHHHHHhhHhhCCCCCCCEEEE
Confidence            4899999999997544  49999999999999987655433     4799999999999999998665567999999999


Q ss_pred             EcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCCCchHH--
Q 024665          150 LGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQV--  227 (264)
Q Consensus       150 lG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~~~~~--  227 (264)
                      +|||+|.+++++++.+. .++|||+|+++.|++.+.+.+....||.++++|+.++..+..+.++||+|++|++.|++.  
T Consensus        79 ~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d~~~p~~~~~  157 (226)
T PRK04266         79 LGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQDVAQPNQAEI  157 (226)
T ss_pred             EccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEECCCChhHHHH
Confidence            99999999999999985 779999999999988888777767899999999987432223446799999999987754  


Q ss_pred             -HHHHHHHhCCC
Q 024665          228 -CFLCLILFQPI  238 (264)
Q Consensus       228 -~~~~~~~l~~~  238 (264)
                       .......++|+
T Consensus       158 ~L~~~~r~LKpG  169 (226)
T PRK04266        158 AIDNAEFFLKDG  169 (226)
T ss_pred             HHHHHHHhcCCC
Confidence             33445566776

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.72  E-value=1.8e-16  Score=137.66  Aligned_cols=157  Identities=22%  Similarity=0.284  Sum_probs=127.7

Q ss_pred             cccccccccCCCceeeeee--EEEEecCCCceecceEeCCcc-----hHHHHHHHhcccccCCCCCCEEEEEcccCChHH
Q 024665           86 EDALVTKNLVAGEAVYNEK--RISVQNEDGTKVEYRIWNPFR-----SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTV  158 (264)
Q Consensus        86 ~d~l~~~~~~~g~~vy~e~--~~~v~~~~~~~~~yr~~~p~~-----s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s  158 (264)
                      .+.++.++  +|+.+-.+.  .+++-.|  +..+|....|++     ++.++.|+..+.   +.|+++|||.|+|||.+|
T Consensus        37 ~~~vigk~--~G~~i~s~~G~~f~vl~p--~~~d~~~~~~R~tQiIyPKD~~~I~~~~g---i~pg~rVlEAGtGSG~lt  109 (256)
T COG2519          37 HDEVIGKP--YGEVIKSHLGVKFYVLKP--TPEDYLLSMKRRTQIIYPKDAGYIVARLG---ISPGSRVLEAGTGSGALT  109 (256)
T ss_pred             hhhhcCCC--CCceEEeeCCceEEEeCC--CHHHHHHhCcCCCceecCCCHHHHHHHcC---CCCCCEEEEcccCchHHH
Confidence            46788877  677666442  5777777  777777666665     678888886666   999999999999999999


Q ss_pred             HHHHHHhCCCCEEEEEeCChHHHHHHHHHhh---cCCCeEEEEcCCCCchhhcccCCCccEEEEcCCCchHHHHHHHHHh
Q 024665          159 SHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK---KRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCLILF  235 (264)
Q Consensus       159 ~~la~~~~~~g~V~avD~s~~~~~~l~~~a~---~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~~~~~~~~~~~~l  235 (264)
                      ..||..+++.|+|+.+|+.++.++.+.++..   ..++|++...|+.+...    .+.||+||+|+|.||.+.....+++
T Consensus       110 ~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~----~~~vDav~LDmp~PW~~le~~~~~L  185 (256)
T COG2519         110 AYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID----EEDVDAVFLDLPDPWNVLEHVSDAL  185 (256)
T ss_pred             HHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc----ccccCEEEEcCCChHHHHHHHHHHh
Confidence            9999999999999999999877554444333   23359999999988652    3499999999999999999999999


Q ss_pred             CCC--------cHHHHHHHHHHhhcc
Q 024665          236 QPI--------VINNLQSVNNETKGG  253 (264)
Q Consensus       236 ~~~--------~~~~l~~~~~~Lk~g  253 (264)
                      +|+        +.+|++.++++|+..
T Consensus       186 kpgg~~~~y~P~veQv~kt~~~l~~~  211 (256)
T COG2519         186 KPGGVVVVYSPTVEQVEKTVEALRER  211 (256)
T ss_pred             CCCcEEEEEcCCHHHHHHHHHHHHhc
Confidence            998        899999999999843

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.69  E-value=1.5e-16  Score=139.53  Aligned_cols=139  Identities=25%  Similarity=0.303  Sum_probs=101.4

Q ss_pred             ceecceEeCCcc-----hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHH---H
Q 024665          114 TKVEYRIWNPFR-----SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDL---V  185 (264)
Q Consensus       114 ~~~~yr~~~p~~-----s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l---~  185 (264)
                      |..+|....|++     ++.+..|+..++   +.||++|||.|+|||.+|..||..++|.|+||.+|+.++.++.+   .
T Consensus         9 t~e~~~~~l~rrtQIiYpkD~~~I~~~l~---i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~   85 (247)
T PF08704_consen    9 TPELWTLSLPRRTQIIYPKDISYILMRLD---IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNF   85 (247)
T ss_dssp             -HHHHHHTS-SSS----HHHHHHHHHHTT-----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHH
T ss_pred             hHHHHHHhccCCcceeeCchHHHHHHHcC---CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHH
Confidence            444454455554     578888887777   99999999999999999999999999999999999996554333   3


Q ss_pred             HHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCCCchHHHHHHHHHh-CCC--------cHHHHHHHHHHhhcchh
Q 024665          186 NMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCLILF-QPI--------VINNLQSVNNETKGGIF  255 (264)
Q Consensus       186 ~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~~~~~~~~~~~~l-~~~--------~~~~l~~~~~~Lk~g~f  255 (264)
                      +......||++.+.|+.+......+...+|+||+|+|.||.+...+..++ +++        +++|++.++++|+...|
T Consensus        86 ~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~DavfLDlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf  164 (247)
T PF08704_consen   86 ERHGLDDNVTVHHRDVCEEGFDEELESDFDAVFLDLPDPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGF  164 (247)
T ss_dssp             HHTTCCTTEEEEES-GGCG--STT-TTSEEEEEEESSSGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTE
T ss_pred             HHcCCCCCceeEecceecccccccccCcccEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCC
Confidence            33334459999999996522111234689999999999999999999999 666        99999999999983234

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=99.64  E-value=5.3e-15  Score=129.01  Aligned_cols=159  Identities=20%  Similarity=0.268  Sum_probs=129.0

Q ss_pred             CcccccccccCCCceeeeee--EEEEecCCCceecceEeCCcc-----hHHHHHHHhcccccCCCCCCEEEEEcccCChH
Q 024665           85 KEDALVTKNLVAGEAVYNEK--RISVQNEDGTKVEYRIWNPFR-----SKLAAAVLGGVDNIWIKPGARVLYLGAASGTT  157 (264)
Q Consensus        85 ~~d~l~~~~~~~g~~vy~e~--~~~v~~~~~~~~~yr~~~p~~-----s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~  157 (264)
                      +...++.+.  +|+.+...+  .+++..|  +...|.+..|++     +..++.|+..|+   +.||++||+.|+|||++
T Consensus        47 ~h~~iIGK~--~G~~v~sskG~~vylL~P--TpELWTl~LphRTQI~Yt~Dia~I~~~L~---i~PGsvV~EsGTGSGSl  119 (314)
T KOG2915|consen   47 PHSDIIGKP--YGSKVASSKGKFVYLLQP--TPELWTLALPHRTQILYTPDIAMILSMLE---IRPGSVVLESGTGSGSL  119 (314)
T ss_pred             chhheecCC--ccceeeecCCcEEEEecC--ChHHhhhhccCcceEEecccHHHHHHHhc---CCCCCEEEecCCCcchH
Confidence            456788877  788877653  7788788  888998888888     567888888777   99999999999999999


Q ss_pred             HHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh---cCCCeEEEEcCCCCchhhcccCCCccEEEEcCCCchHHHHHHHHH
Q 024665          158 VSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK---KRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCLIL  234 (264)
Q Consensus       158 s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~---~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~~~~~~~~~~~~  234 (264)
                      +..+|..++|.|++|.+|+.+.-++.+.+.-+   ...||++++.|+...-. ......+|+||+|+|+||.+...+.+.
T Consensus       120 ShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF-~~ks~~aDaVFLDlPaPw~AiPha~~~  198 (314)
T KOG2915|consen  120 SHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF-LIKSLKADAVFLDLPAPWEAIPHAAKI  198 (314)
T ss_pred             HHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc-cccccccceEEEcCCChhhhhhhhHHH
Confidence            99999999999999999998644444444332   23599999999976431 111358999999999999999999998


Q ss_pred             hCCC---------cHHHHHHHHHHhh
Q 024665          235 FQPI---------VINNLQSVNNETK  251 (264)
Q Consensus       235 l~~~---------~~~~l~~~~~~Lk  251 (264)
                      ++..         +++|++..+++|.
T Consensus       199 lk~~g~r~csFSPCIEQvqrtce~l~  224 (314)
T KOG2915|consen  199 LKDEGGRLCSFSPCIEQVQRTCEALR  224 (314)
T ss_pred             hhhcCceEEeccHHHHHHHHHHHHHH
Confidence            7755         8899999999887

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.62  E-value=3.2e-15  Score=132.94  Aligned_cols=103  Identities=25%  Similarity=0.266  Sum_probs=84.7

Q ss_pred             eeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCCh
Q 024665           99 AVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSH  178 (264)
Q Consensus        99 ~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~  178 (264)
                      ..|.++.+++|++             +|+++..++      .++|+++|||+|||+|.+|+++|+++.+.+.|+|+|+++
T Consensus        46 ~~~~~G~~~~qd~-------------~s~~~~~~l------~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~  106 (264)
T TIGR00446        46 PEYLSGLYYIQEA-------------SSMIPPLAL------EPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSK  106 (264)
T ss_pred             hhHhCCeEEEECH-------------HHHHHHHHh------CCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCH
Confidence            4688899999997             788777665      478999999999999999999999998788999999998


Q ss_pred             HHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEEcCCC
Q 024665          179 RSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       179 ~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~  223 (264)
                      .+++.+.++....  .||++++.|++++..   ....||+|++|+|+
T Consensus       107 ~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~---~~~~fD~Vl~D~Pc  150 (264)
T TIGR00446       107 SRTKVLIANINRCGVLNVAVTNFDGRVFGA---AVPKFDAILLDAPC  150 (264)
T ss_pred             HHHHHHHHHHHHcCCCcEEEecCCHHHhhh---hccCCCEEEEcCCC
Confidence            8876665554433  389999999877542   23569999999993

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.57  E-value=2.1e-14  Score=135.97  Aligned_cols=104  Identities=25%  Similarity=0.356  Sum_probs=85.5

Q ss_pred             eeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCCh
Q 024665           99 AVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSH  178 (264)
Q Consensus        99 ~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~  178 (264)
                      ..|.++.+++|++             +++++..++      .++++++|||+|||+|.+|+++++.+++.++|+|+|+++
T Consensus       212 ~~~~~G~~~~Qd~-------------~s~~~~~~l------~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~  272 (431)
T PRK14903        212 RVIKDGLATVQGE-------------SSQIVPLLM------ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISR  272 (431)
T ss_pred             hHHHCCeEEEECH-------------HHHHHHHHh------CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCH
Confidence            4688889999987             777777665      488999999999999999999999998889999999998


Q ss_pred             HHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEEcCCC
Q 024665          179 RSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       179 ~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~  223 (264)
                      .+++.+.+++...  .+|++++.|+.++..+  ..++||+|++|+|+
T Consensus       273 ~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~--~~~~fD~Vl~DaPC  317 (431)
T PRK14903        273 EKIQLVEKHAKRLKLSSIEIKIADAERLTEY--VQDTFDRILVDAPC  317 (431)
T ss_pred             HHHHHHHHHHHHcCCCeEEEEECchhhhhhh--hhccCCEEEECCCC
Confidence            8876666555432  3789999999876532  34689999999995

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.54  E-value=4.7e-14  Score=126.33  Aligned_cols=159  Identities=18%  Similarity=0.192  Sum_probs=107.3

Q ss_pred             CCceeeecceeeceEEEecCCcccccccccCCCceeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCC
Q 024665           65 GGSKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPG  144 (264)
Q Consensus        65 ~g~k~~i~~~~~~g~~~~~~~~d~l~~~~~~~g~~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g  144 (264)
                      =+++++|.|||++  |... ..+..+..+  ||. .|+++.    +|             ++.+|.+.+..+    ++++
T Consensus       111 ig~~f~I~Psw~~--~~~~-~~~~~i~lD--PGl-AFGTG~----Hp-------------TT~lcL~~Le~~----~~~g  163 (300)
T COG2264         111 IGERFVIVPSWRE--YPEP-SDELNIELD--PGL-AFGTGT----HP-------------TTSLCLEALEKL----LKKG  163 (300)
T ss_pred             eeeeEEECCCCcc--CCCC-CCceEEEEc--ccc-ccCCCC----Ch-------------hHHHHHHHHHHh----hcCC
Confidence            4788999999987  2221 133445555  887 898883    77             888998888443    5699


Q ss_pred             CEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeE----EEEcCCCCchhhcccCCCccEEEEc
Q 024665          145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVI----PIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~----~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      .+|||+|||||.+++.++.+  ...+|+|+|+++-+++...+++.++ +|.    .-..+..+..    ...+||+|++|
T Consensus       164 ~~vlDvGcGSGILaIAa~kL--GA~~v~g~DiDp~AV~aa~eNa~~N-~v~~~~~~~~~~~~~~~----~~~~~DvIVAN  236 (300)
T COG2264         164 KTVLDVGCGSGILAIAAAKL--GAKKVVGVDIDPQAVEAARENARLN-GVELLVQAKGFLLLEVP----ENGPFDVIVAN  236 (300)
T ss_pred             CEEEEecCChhHHHHHHHHc--CCceEEEecCCHHHHHHHHHHHHHc-CCchhhhcccccchhhc----ccCcccEEEeh
Confidence            99999999999999999987  5778999999987766555555443 333    2222222211    22589999999


Q ss_pred             CC-Cch-HHHHHHHHHhCCC--------cHHHHHHHHHHhhcchhhh
Q 024665          221 VA-QPD-QVCFLCLILFQPI--------VINNLQSVNNETKGGIFEF  257 (264)
Q Consensus       221 ~p-~~~-~~~~~~~~~l~~~--------~~~~l~~~~~~Lk~g~f~~  257 (264)
                      +- .|- +........++|.        +..+...+.+++....|.+
T Consensus       237 ILA~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v  283 (300)
T COG2264         237 ILAEVLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEV  283 (300)
T ss_pred             hhHHHHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeE
Confidence            86 222 2223334455665        7777888888876444443

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.53  E-value=5.8e-14  Score=133.16  Aligned_cols=106  Identities=25%  Similarity=0.383  Sum_probs=84.7

Q ss_pred             eeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCCh
Q 024665           99 AVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSH  178 (264)
Q Consensus        99 ~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~  178 (264)
                      ..|.++.+++|++             ++.+++.++      .++++++|||+|||+|.+|+++++.+.+.++|+|+|+++
T Consensus       227 ~~f~~g~~~~qd~-------------~s~l~~~~l------~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~  287 (434)
T PRK14901        227 PGYEEGWWTVQDR-------------SAQLVAPLL------DPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSA  287 (434)
T ss_pred             hHHhCCeEEEECH-------------HHHHHHHHh------CCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCH
Confidence            3677888899987             777777665      478999999999999999999999988788999999998


Q ss_pred             HHHHHHHHHhhcC--CCeEEEEcCCCCchhhc-ccCCCccEEEEcCCC
Q 024665          179 RSGRDLVNMAKKR--TNVIPIIEDARHPAKYR-MLVGMVDVIFSDVAQ  223 (264)
Q Consensus       179 ~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~-~~~~~fD~V~~d~p~  223 (264)
                      .+++.+.++....  .||++++.|+++..... ...++||+|++|+|+
T Consensus       288 ~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPC  335 (434)
T PRK14901        288 SRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILLDAPC  335 (434)
T ss_pred             HHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEEeCCC
Confidence            8876666555433  37999999998764210 124589999999994

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=99.51  E-value=6.8e-14  Score=133.27  Aligned_cols=107  Identities=23%  Similarity=0.184  Sum_probs=85.0

Q ss_pred             ceeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCC
Q 024665           98 EAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFS  177 (264)
Q Consensus        98 ~~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s  177 (264)
                      ...|.++.+++|++             +|++++.++.    ..++|+++|||+||++|.+|+++|+++.+.+.|+|+|++
T Consensus        85 ~~~~~~G~~yvQd~-------------sS~l~~~~L~----~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~  147 (470)
T PRK11933         85 TAEHLSGLFYIQEA-------------SSMLPVAALF----ADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYS  147 (470)
T ss_pred             ChHHHCCcEEEECH-------------HHHHHHHHhc----cCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCC
Confidence            34778899999998             8888887651    136899999999999999999999999888999999999


Q ss_pred             hHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEEcCCC
Q 024665          178 HRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       178 ~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~  223 (264)
                      +.-++.+.++....  .||++++.|++++...  ....||.|++|+|+
T Consensus       148 ~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~--~~~~fD~ILvDaPC  193 (470)
T PRK11933        148 ASRVKVLHANISRCGVSNVALTHFDGRVFGAA--LPETFDAILLDAPC  193 (470)
T ss_pred             HHHHHHHHHHHHHcCCCeEEEEeCchhhhhhh--chhhcCeEEEcCCC
Confidence            65544444444322  3899999999876432  34679999999994

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.50  E-value=2.2e-13  Score=129.02  Aligned_cols=105  Identities=26%  Similarity=0.315  Sum_probs=83.5

Q ss_pred             eeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCCh
Q 024665           99 AVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSH  178 (264)
Q Consensus        99 ~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~  178 (264)
                      ..|.++.+++|++             +|++++.++      .++++++|||+|||+|.+++++++.+. .++|+++|+++
T Consensus       219 ~~~~~G~~~iQd~-------------~s~~~~~~l------~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~  278 (427)
T PRK10901        219 PGFAEGWVSVQDA-------------AAQLAATLL------APQNGERVLDACAAPGGKTAHILELAP-QAQVVALDIDA  278 (427)
T ss_pred             chhhCceEEEECH-------------HHHHHHHHc------CCCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCH
Confidence            3677889999997             788877766      478999999999999999999999874 37999999999


Q ss_pred             HHHHHHHHHhhcC-CCeEEEEcCCCCchhhcccCCCccEEEEcCCCc
Q 024665          179 RSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQP  224 (264)
Q Consensus       179 ~~~~~l~~~a~~~-~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~~  224 (264)
                      .+++.+.+++... .++++++.|+.++... ...++||.|++|+|+.
T Consensus       279 ~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~-~~~~~fD~Vl~D~Pcs  324 (427)
T PRK10901        279 QRLERVRENLQRLGLKATVIVGDARDPAQW-WDGQPFDRILLDAPCS  324 (427)
T ss_pred             HHHHHHHHHHHHcCCCeEEEEcCcccchhh-cccCCCCEEEECCCCC
Confidence            8876666655443 2678999999875432 1235799999999953

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=99.50  E-value=1.1e-13  Score=127.91  Aligned_cols=136  Identities=32%  Similarity=0.346  Sum_probs=95.9

Q ss_pred             eeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCC-EEEEEeCCh
Q 024665          100 VYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNG-VVYAVEFSH  178 (264)
Q Consensus       100 vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g-~V~avD~s~  178 (264)
                      .|.++.+++|++             +|++++.++      .++|+++|||+|+++|.+|.|+|+++.+.+ .|+|+|+++
T Consensus       132 ~~~~G~~~vQd~-------------sS~l~a~~L------~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~  192 (355)
T COG0144         132 EFAEGLIYVQDE-------------ASQLPALVL------DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSP  192 (355)
T ss_pred             hhhceEEEEcCH-------------HHHHHHHHc------CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCH
Confidence            788999999998             899999887      699999999999999999999999998744 459999996


Q ss_pred             HHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEEcCCC---------chHHH---HHHHHHhCCCcHHHHH
Q 024665          179 RSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ---------PDQVC---FLCLILFQPIVINNLQ  244 (264)
Q Consensus       179 ~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~---------~~~~~---~~~~~~l~~~~~~~l~  244 (264)
                      .-++.+.++.+..  .|+++++.|++..........+||.|++|+|+         |+...   ...+..+...+.+.|.
T Consensus       193 ~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~  272 (355)
T COG0144         193 KRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILA  272 (355)
T ss_pred             HHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHH
Confidence            4444444444322  27899999988665332222369999999993         32211   1112222222555566


Q ss_pred             HHHHHhh-cch
Q 024665          245 SVNNETK-GGI  254 (264)
Q Consensus       245 ~~~~~Lk-~g~  254 (264)
                      .+.+.|| +|.
T Consensus       273 ~a~~~lk~GG~  283 (355)
T COG0144         273 AALKLLKPGGV  283 (355)
T ss_pred             HHHHhcCCCCE
Confidence            6667777 443

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.49  E-value=2.8e-13  Score=128.82  Aligned_cols=105  Identities=27%  Similarity=0.324  Sum_probs=83.6

Q ss_pred             ceeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCC
Q 024665           98 EAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFS  177 (264)
Q Consensus        98 ~~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s  177 (264)
                      ...|.++.+++|++             ++.+++.++      .++++++|||+|||+|.+++++++.+++.++|+++|++
T Consensus       224 ~~~~~~G~~~~qd~-------------~s~lv~~~l------~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~  284 (444)
T PRK14902        224 TDLFKDGLITIQDE-------------SSMLVAPAL------DPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIH  284 (444)
T ss_pred             ChHHhCceEEEECh-------------HHHHHHHHh------CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCC
Confidence            34778889999987             777776655      47889999999999999999999998778899999999


Q ss_pred             hHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEEcCCC
Q 024665          178 HRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       178 ~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~  223 (264)
                      +.+++.+.++....  .+|++++.|+.++...  +.+.||+|++|+|+
T Consensus       285 ~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~--~~~~fD~Vl~D~Pc  330 (444)
T PRK14902        285 EHKLKLIEENAKRLGLTNIETKALDARKVHEK--FAEKFDKILVDAPC  330 (444)
T ss_pred             HHHHHHHHHHHHHcCCCeEEEEeCCcccccch--hcccCCEEEEcCCC
Confidence            88766555544432  3799999999875421  23689999999984

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.47  E-value=2.8e-13  Score=128.86  Aligned_cols=102  Identities=26%  Similarity=0.260  Sum_probs=81.9

Q ss_pred             eeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCCh
Q 024665           99 AVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSH  178 (264)
Q Consensus        99 ~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~  178 (264)
                      ..|.++.+++|++             ++.++..++      .+.++++|||+|||+|.+|+++++.+.+.++|+|+|+|+
T Consensus       225 ~~~~~G~~~vqd~-------------~s~l~~~~l------~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~  285 (445)
T PRK14904        225 PFLKLGLVSVQNP-------------TQALACLLL------NPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYP  285 (445)
T ss_pred             hHHhCcEEEEeCH-------------HHHHHHHhc------CCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCH
Confidence            3677788888886             666666655      477899999999999999999999987778999999998


Q ss_pred             HHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEEcCCC
Q 024665          179 RSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       179 ~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~  223 (264)
                      .+++.+.+.+...  .||++++.|+.++.+    ...||+|++|+|+
T Consensus       286 ~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~----~~~fD~Vl~D~Pc  328 (445)
T PRK14904        286 QKLEKIRSHASALGITIIETIEGDARSFSP----EEQPDAILLDAPC  328 (445)
T ss_pred             HHHHHHHHHHHHhCCCeEEEEeCccccccc----CCCCCEEEEcCCC
Confidence            8876665555432  379999999987542    3579999999994

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.46  E-value=5e-13  Score=126.49  Aligned_cols=104  Identities=18%  Similarity=0.214  Sum_probs=79.8

Q ss_pred             eeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCCh
Q 024665           99 AVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSH  178 (264)
Q Consensus        99 ~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~  178 (264)
                      ..|.++.+++|++             +|++++.++      .++++++|||+|||+|.+|.++++.++ .++|+|+|+++
T Consensus       213 ~~~~~G~~~~Qd~-------------~s~~~~~~L------~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~  272 (426)
T TIGR00563       213 PGFEEGWVTVQDA-------------SAQWVATWL------APQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHE  272 (426)
T ss_pred             chhhCCeEEEECH-------------HHHHHHHHh------CCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCH
Confidence            4788999999997             788777766      478999999999999999999999985 78999999998


Q ss_pred             HHHHHHHHHhhcCC-C--eEEEEcCCCCchhhcccCCCccEEEEcCCC
Q 024665          179 RSGRDLVNMAKKRT-N--VIPIIEDARHPAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       179 ~~~~~l~~~a~~~~-n--V~~i~~D~~~~~~~~~~~~~fD~V~~d~p~  223 (264)
                      .+++.+.++.+... +  ++++++|+.++..+ .....||+|++|+|+
T Consensus       273 ~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~-~~~~~fD~VllDaPc  319 (426)
T TIGR00563       273 HRLKRVYENLKRLGLTIKAETKDGDGRGPSQW-AENEQFDRILLDAPC  319 (426)
T ss_pred             HHHHHHHHHHHHcCCCeEEEEecccccccccc-ccccccCEEEEcCCC
Confidence            88766655554322 2  34466776654321 123579999999993

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.45  E-value=6.4e-13  Score=115.91  Aligned_cols=94  Identities=23%  Similarity=0.276  Sum_probs=80.1

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIF  218 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~  218 (264)
                      ++||++|||||||||-+++.+++.++ .++|+++|+|+.|++...+.....  .+|+++++||.+++   +.+++||+|.
T Consensus        49 ~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP---f~D~sFD~vt  124 (238)
T COG2226          49 IKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP---FPDNSFDAVT  124 (238)
T ss_pred             CCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC---CCCCccCEEE
Confidence            66999999999999999999999987 899999999999987776666542  26999999999987   4678999998


Q ss_pred             Ec-----CCCchHHHHHHHHHhCCC
Q 024665          219 SD-----VAQPDQVCFLCLILFQPI  238 (264)
Q Consensus       219 ~d-----~p~~~~~~~~~~~~l~~~  238 (264)
                      +.     ++.++.+.......++|+
T Consensus       125 ~~fglrnv~d~~~aL~E~~RVlKpg  149 (238)
T COG2226         125 ISFGLRNVTDIDKALKEMYRVLKPG  149 (238)
T ss_pred             eeehhhcCCCHHHHHHHHHHhhcCC
Confidence            74     457778888888888887

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.45  E-value=2.6e-13  Score=122.14  Aligned_cols=155  Identities=17%  Similarity=0.266  Sum_probs=97.9

Q ss_pred             CceeeecceeeceEEEecCCcccccccccCCCceeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCCC
Q 024665           66 GSKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGA  145 (264)
Q Consensus        66 g~k~~i~~~~~~g~~~~~~~~d~l~~~~~~~g~~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~  145 (264)
                      +.+++|.|+|++  | .....+..+..+  ||. .|+++    .||             ++++|..++..+    .++++
T Consensus       111 g~~~~I~P~w~~--~-~~~~~~~~I~id--Pg~-AFGTG----~H~-------------TT~lcl~~l~~~----~~~g~  163 (295)
T PF06325_consen  111 GDRLVIVPSWEE--Y-PEPPDEIVIEID--PGM-AFGTG----HHP-------------TTRLCLELLEKY----VKPGK  163 (295)
T ss_dssp             CTTEEEEETT-------SSTTSEEEEES--TTS-SS-SS----HCH-------------HHHHHHHHHHHH----SSTTS
T ss_pred             CCcEEEECCCcc--c-CCCCCcEEEEEC--CCC-cccCC----CCH-------------HHHHHHHHHHHh----ccCCC
Confidence            567899999987  3 222344455655  775 88888    377             889998888443    67889


Q ss_pred             EEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665          146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       146 ~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      +|||+|||||.+++.++.+  ...+|+|+|+++.+++...+++..+   .++.+.  ...+.     ...+||+|++|..
T Consensus       164 ~vLDvG~GSGILaiaA~kl--GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~-----~~~~~dlvvANI~  234 (295)
T PF06325_consen  164 RVLDVGCGSGILAIAAAKL--GAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDL-----VEGKFDLVVANIL  234 (295)
T ss_dssp             EEEEES-TTSHHHHHHHHT--TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCT-----CCS-EEEEEEES-
T ss_pred             EEEEeCCcHHHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eeccc-----ccccCCEEEECCC
Confidence            9999999999999999987  4679999999987765555544443   355442  22221     2378999999987


Q ss_pred             Cch-HHHHH-HHHHhCCC--------cHHHHHHHHHHhhcchhhh
Q 024665          223 QPD-QVCFL-CLILFQPI--------VINNLQSVNNETKGGIFEF  257 (264)
Q Consensus       223 ~~~-~~~~~-~~~~l~~~--------~~~~l~~~~~~Lk~g~f~~  257 (264)
                      ... ..... ..+.++|.        +..+...+.++++. .|.+
T Consensus       235 ~~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~  278 (295)
T PF06325_consen  235 ADVLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFEL  278 (295)
T ss_dssp             HHHHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEE
T ss_pred             HHHHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEE
Confidence            322 11111 22334443        66677777777765 4443

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.42  E-value=1.7e-13  Score=119.74  Aligned_cols=96  Identities=21%  Similarity=0.268  Sum_probs=65.8

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      .++++.+|||+|||||.++..+++.+++.++|+++|+|+.|++...+.....  .||+++++|+++++   ...++||+|
T Consensus        44 ~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp---~~d~sfD~v  120 (233)
T PF01209_consen   44 GLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLP---FPDNSFDAV  120 (233)
T ss_dssp             T--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB-----S-TT-EEEE
T ss_pred             CCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhc---CCCCceeEE
Confidence            3788999999999999999999999888899999999999987766665433  39999999999976   345799999


Q ss_pred             EEcC-----CCchHHHHHHHHHhCCC
Q 024665          218 FSDV-----AQPDQVCFLCLILFQPI  238 (264)
Q Consensus       218 ~~d~-----p~~~~~~~~~~~~l~~~  238 (264)
                      ++-.     +.+..+.......++|+
T Consensus       121 ~~~fglrn~~d~~~~l~E~~RVLkPG  146 (233)
T PF01209_consen  121 TCSFGLRNFPDRERALREMYRVLKPG  146 (233)
T ss_dssp             EEES-GGG-SSHHHHHHHHHHHEEEE
T ss_pred             EHHhhHHhhCCHHHHHHHHHHHcCCC
Confidence            9743     45556666666666665

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.41  E-value=9.8e-13  Score=115.00  Aligned_cols=116  Identities=16%  Similarity=0.207  Sum_probs=83.5

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHH---HHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSG---RDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~---~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      +....+|||+|||+|.+++.+|++.. ..+|++||++++++   ++.++.|....+|++++.|+.++.+. ....+||+|
T Consensus        42 ~~~~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~-~~~~~fD~I  119 (248)
T COG4123          42 VPKKGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKA-LVFASFDLI  119 (248)
T ss_pred             cccCCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhc-ccccccCEE
Confidence            55578999999999999999999864 47999999998774   34444444455999999999987754 233479999


Q ss_pred             EEcCCC--------chHHHHHHHHHhCCCcHHHHHHHHHHhh-cchhhhh
Q 024665          218 FSDVAQ--------PDQVCFLCLILFQPIVINNLQSVNNETK-GGIFEFL  258 (264)
Q Consensus       218 ~~d~p~--------~~~~~~~~~~~l~~~~~~~l~~~~~~Lk-~g~f~~l  258 (264)
                      +||||.        +++....+...........+..+.+.|| +|.+.++
T Consensus       120 i~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V  169 (248)
T COG4123         120 ICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV  169 (248)
T ss_pred             EeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE
Confidence            999992        2233333333333336666666677788 7777665

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.38  E-value=1.1e-11  Score=111.67  Aligned_cols=121  Identities=17%  Similarity=0.160  Sum_probs=78.9

Q ss_pred             chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCC
Q 024665          125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDA  201 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~  201 (264)
                      ++.++..++..    ..+++++|||+|||+|.+++.++..  ...+|+++|+|+.+++.+.++...+   .++.++..|.
T Consensus       145 tt~l~l~~l~~----~~~~g~~VLDvGcGsG~lai~aa~~--g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~  218 (288)
T TIGR00406       145 TTSLCLEWLED----LDLKDKNVIDVGCGSGILSIAALKL--GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYL  218 (288)
T ss_pred             HHHHHHHHHHh----hcCCCCEEEEeCCChhHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccc
Confidence            56666666533    2457899999999999999988865  3568999999988865555544332   2566666663


Q ss_pred             CCchhhcccCCCccEEEEcCCCch--HHHHHHHHHhCCC--------cHHHHHHHHHHhhcchhhh
Q 024665          202 RHPAKYRMLVGMVDVIFSDVAQPD--QVCFLCLILFQPI--------VINNLQSVNNETKGGIFEF  257 (264)
Q Consensus       202 ~~~~~~~~~~~~fD~V~~d~p~~~--~~~~~~~~~l~~~--------~~~~l~~~~~~Lk~g~f~~  257 (264)
                      ...     ..++||+|++|.....  .........++|.        ...+..++.+.++.. |.+
T Consensus       219 ~~~-----~~~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~  278 (288)
T TIGR00406       219 EQP-----IEGKADVIVANILAEVIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTV  278 (288)
T ss_pred             ccc-----cCCCceEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-Cce
Confidence            322     2468999999976322  2333345566665        445556666666654 544

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.34  E-value=1.2e-11  Score=100.69  Aligned_cols=79  Identities=22%  Similarity=0.265  Sum_probs=63.7

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      +.+.+|||+|||+|.++..+++...+..+|+++|+|+.+++.+.+.+...  .|++++++|+.+++..  +.++||+|++
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~--~~~~~D~I~~   79 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE--LEEKFDIIIS   79 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC--SSTTEEEEEE
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccc--cCCCeeEEEE
Confidence            46789999999999999999977677889999999999987766655432  3899999999995421  2279999999


Q ss_pred             cCC
Q 024665          220 DVA  222 (264)
Q Consensus       220 d~p  222 (264)
                      +.+
T Consensus        80 ~~~   82 (152)
T PF13847_consen   80 NGV   82 (152)
T ss_dssp             EST
T ss_pred             cCc
Confidence            865

...

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.33  E-value=1.8e-11  Score=93.87  Aligned_cols=74  Identities=23%  Similarity=0.305  Sum_probs=60.6

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHh---hcCCCeEEEEcCC-CCchhhcccCCCccEEE
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA---KKRTNVIPIIEDA-RHPAKYRMLVGMVDVIF  218 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a---~~~~nV~~i~~D~-~~~~~~~~~~~~fD~V~  218 (264)
                      |+.+|||||||+|.++..+++.. +..+|++||+|+.+++.+.+.+   ....||++++.|+ ....    ..++||+|+
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~D~v~   75 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD----FLEPFDLVI   75 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT----TSSCEEEEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc----cCCCCCEEE
Confidence            68899999999999999999954 5779999999999987776666   2345999999999 2222    346899999


Q ss_pred             EcC
Q 024665          219 SDV  221 (264)
Q Consensus       219 ~d~  221 (264)
                      ++.
T Consensus        76 ~~~   78 (112)
T PF12847_consen   76 CSG   78 (112)
T ss_dssp             ECS
T ss_pred             ECC
Confidence            986

...

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=99.32  E-value=2.3e-12  Score=115.70  Aligned_cols=105  Identities=30%  Similarity=0.359  Sum_probs=84.5

Q ss_pred             eeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCCh
Q 024665           99 AVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSH  178 (264)
Q Consensus        99 ~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~  178 (264)
                      ..|.++.+++|++             +|++++.++      .++|+++|||+||++|.+|.++|+++...+.|+|+|+++
T Consensus        60 ~~~~~G~~~vQd~-------------sS~l~~~~L------~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~  120 (283)
T PF01189_consen   60 PEFKNGLFYVQDE-------------SSQLVALAL------DPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISP  120 (283)
T ss_dssp             HHHHTTSEEEHHH-------------HHHHHHHHH------TTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSH
T ss_pred             hhhhCCcEEeccc-------------ccccccccc------cccccccccccccCCCCceeeeeecccchhHHHHhccCH
Confidence            3688889999997             889988887      588999999999999999999999999899999999996


Q ss_pred             HHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEEcCCC
Q 024665          179 RSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       179 ~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~  223 (264)
                      .-++.+.++....  .||.+++.|++.+... .....||.|++|+|+
T Consensus       121 ~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~-~~~~~fd~VlvDaPC  166 (283)
T PF01189_consen  121 KRLKRLKENLKRLGVFNVIVINADARKLDPK-KPESKFDRVLVDAPC  166 (283)
T ss_dssp             HHHHHHHHHHHHTT-SSEEEEESHHHHHHHH-HHTTTEEEEEEECSC
T ss_pred             HHHHHHHHHHHhcCCceEEEEeecccccccc-ccccccchhhcCCCc
Confidence            5444544444332  3889998998876432 123469999999993

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.32  E-value=5.4e-11  Score=99.43  Aligned_cols=114  Identities=20%  Similarity=0.235  Sum_probs=84.7

Q ss_pred             HHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc--CCCeEEEEcCCCCchhhc
Q 024665          131 AVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--RTNVIPIIEDARHPAKYR  208 (264)
Q Consensus       131 ~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~--~~nV~~i~~D~~~~~~~~  208 (264)
                      ..+..|.   ++|+++++|+|||||++++.+| ++.|.++|||+|.++++++...+++.+  -+|++++.+|+-+..+  
T Consensus        25 l~ls~L~---~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~--   98 (187)
T COG2242          25 LTLSKLR---PRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALP--   98 (187)
T ss_pred             HHHHhhC---CCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhc--
Confidence            3344444   9999999999999999999999 778999999999998776443333332  3499999999987653  


Q ss_pred             ccCCCccEEEEcCCCch-HHHHHHHHHhCCC--------cHHHHHHHHHHhh
Q 024665          209 MLVGMVDVIFSDVAQPD-QVCFLCLILFQPI--------VINNLQSVNNETK  251 (264)
Q Consensus       209 ~~~~~fD~V~~d~p~~~-~~~~~~~~~l~~~--------~~~~l~~~~~~Lk  251 (264)
                      .+ ..+|+||..-.-.. ......+..+++.        +++.+..+++.++
T Consensus        99 ~~-~~~daiFIGGg~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~  149 (187)
T COG2242          99 DL-PSPDAIFIGGGGNIEEILEAAWERLKPGGRLVANAITLETLAKALEALE  149 (187)
T ss_pred             CC-CCCCEEEECCCCCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHH
Confidence            12 37999999877333 3444455556775        6777777777777

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.32  E-value=1.2e-11  Score=109.94  Aligned_cols=135  Identities=16%  Similarity=0.149  Sum_probs=90.5

Q ss_pred             cccccccCCCceeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCC
Q 024665           88 ALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGP  167 (264)
Q Consensus        88 ~l~~~~~~~g~~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~  167 (264)
                      ..+.++|++.+..|.+...+++..             ...-...++   +.+.++||++|||+|||.|.+++.+|+..  
T Consensus        33 l~Ld~~~~Yscayf~~~~~tL~eA-------------Q~~k~~~~~---~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--   94 (283)
T COG2230          33 LFLDPSMTYSCAYFEDPDMTLEEA-------------QRAKLDLIL---EKLGLKPGMTLLDIGCGWGGLAIYAAEEY--   94 (283)
T ss_pred             HhcCCCCceeeEEeCCCCCChHHH-------------HHHHHHHHH---HhcCCCCCCEEEEeCCChhHHHHHHHHHc--
Confidence            467777777776666665454443             222223333   34459999999999999999999999996  


Q ss_pred             CCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcccCCCccEEEEcCCCchHHHHHHHHHhCCC-cHHHH
Q 024665          168 NGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCLILFQPI-VINNL  243 (264)
Q Consensus       168 ~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~~~~~~~~~~~~l~~~-~~~~l  243 (264)
                      ..+|+++++|+...+...+.+..   ..||+++..|.+++.      +.||.|++-         -+...+-.. ...++
T Consensus        95 ~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~------e~fDrIvSv---------gmfEhvg~~~~~~ff  159 (283)
T COG2230          95 GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE------EPFDRIVSV---------GMFEHVGKENYDDFF  159 (283)
T ss_pred             CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc------cccceeeeh---------hhHHHhCcccHHHHH
Confidence            46899999997765554443333   348999999998865      569999972         222222222 55556


Q ss_pred             HHHHHHhh-cchh
Q 024665          244 QSVNNETK-GGIF  255 (264)
Q Consensus       244 ~~~~~~Lk-~g~f  255 (264)
                      ..+.+.|+ +|.+
T Consensus       160 ~~~~~~L~~~G~~  172 (283)
T COG2230         160 KKVYALLKPGGRM  172 (283)
T ss_pred             HHHHhhcCCCceE
Confidence            66666666 4443

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.31  E-value=5.5e-11  Score=101.21  Aligned_cols=110  Identities=18%  Similarity=0.236  Sum_probs=83.1

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcccCCCccE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVDV  216 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~~~~fD~  216 (264)
                      .+.++++|||+|||+|.+++.++..+++.++|+++|+++.+++.+.+++..   ..|+++++.|+.+..+  ...+.||+
T Consensus        37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~--~~~~~~D~  114 (198)
T PRK00377         37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILF--TINEKFDR  114 (198)
T ss_pred             CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHh--hcCCCCCE
Confidence            488999999999999999999998887778999999998886655444332   2489999999876432  23368999


Q ss_pred             EEEcCC--CchHHHHHHHHHhCCC--------cHHHHHHHHHHhh
Q 024665          217 IFSDVA--QPDQVCFLCLILFQPI--------VINNLQSVNNETK  251 (264)
Q Consensus       217 V~~d~p--~~~~~~~~~~~~l~~~--------~~~~l~~~~~~Lk  251 (264)
                      |+++..  .+........+.++|.        ..+.+.++.+.|+
T Consensus       115 V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~  159 (198)
T PRK00377        115 IFIGGGSEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALE  159 (198)
T ss_pred             EEECCCcccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHH
Confidence            999654  3445555566677776        4566777777776

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.31  E-value=3.7e-11  Score=103.56  Aligned_cols=93  Identities=27%  Similarity=0.410  Sum_probs=72.1

Q ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCC
Q 024665          126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARH  203 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~  203 (264)
                      +.+.+.++..++   ++++++|||+|||+|.++..|++.+.+.++|+++|+++.+++.+.+.....  .|++++++|+.+
T Consensus        63 p~~~~~~~~~l~---~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~  139 (215)
T TIGR00080        63 PHMVAMMTELLE---LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQ  139 (215)
T ss_pred             HHHHHHHHHHhC---CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCccc
Confidence            345555655554   889999999999999999999999877788999999998876655544332  489999999977


Q ss_pred             chhhcccCCCccEEEEcCCCc
Q 024665          204 PAKYRMLVGMVDVIFSDVAQP  224 (264)
Q Consensus       204 ~~~~~~~~~~fD~V~~d~p~~  224 (264)
                      ...   ...+||+|+++.+.+
T Consensus       140 ~~~---~~~~fD~Ii~~~~~~  157 (215)
T TIGR00080       140 GWE---PLAPYDRIYVTAAGP  157 (215)
T ss_pred             CCc---ccCCCCEEEEcCCcc
Confidence            432   235899999987643

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.28  E-value=6.8e-11  Score=101.86  Aligned_cols=92  Identities=27%  Similarity=0.304  Sum_probs=72.1

Q ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCC
Q 024665          126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARH  203 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~  203 (264)
                      +.+.+.++..++   ++++++|||+|||+|+++..+++.+++.++|+++|+++++++...+.....  .||+++++|+.+
T Consensus        62 p~~~~~~~~~l~---~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~  138 (212)
T PRK13942         62 IHMVAIMCELLD---LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTL  138 (212)
T ss_pred             HHHHHHHHHHcC---CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCccc
Confidence            456666665555   899999999999999999999999877789999999998876555444322  389999999876


Q ss_pred             chhhcccCCCccEEEEcCCC
Q 024665          204 PAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       204 ~~~~~~~~~~fD~V~~d~p~  223 (264)
                      ...   ...+||+|+++...
T Consensus       139 ~~~---~~~~fD~I~~~~~~  155 (212)
T PRK13942        139 GYE---ENAPYDRIYVTAAG  155 (212)
T ss_pred             CCC---cCCCcCEEEECCCc
Confidence            532   23689999998653

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.28  E-value=1.7e-11  Score=102.02  Aligned_cols=75  Identities=27%  Similarity=0.275  Sum_probs=57.7

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC--CeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT--NVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~--nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      +..+|||+|||+|.+++.++... +..+|+++|+++++++.+.+....+.  ++++++.|..+..+    ..+||+|++|
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~----~~~fD~Iv~N  105 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP----DGKFDLIVSN  105 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC----TTCEEEEEE-
T ss_pred             cCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc----ccceeEEEEc
Confidence            77899999999999999999874 56689999999988655544444332  49999999877542    4799999999


Q ss_pred             CC
Q 024665          221 VA  222 (264)
Q Consensus       221 ~p  222 (264)
                      ||
T Consensus       106 PP  107 (170)
T PF05175_consen  106 PP  107 (170)
T ss_dssp             --
T ss_pred             cc
Confidence            99

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=99.26  E-value=1e-11  Score=114.27  Aligned_cols=106  Identities=25%  Similarity=0.301  Sum_probs=83.5

Q ss_pred             ceeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCC
Q 024665           98 EAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFS  177 (264)
Q Consensus        98 ~~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s  177 (264)
                      ...|.++.+.+|+.             +|.++...+      .++|+++|||+||++|..|.|+|.+|+.+|.|||.|.+
T Consensus       215 t~e~lag~~~LQ~~-------------sS~Lpv~aL------~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n  275 (460)
T KOG1122|consen  215 TPEYLAGHYMLQNA-------------SSFLPVMAL------DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSN  275 (460)
T ss_pred             chhhcccceeeccC-------------cccceeeec------CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccc
Confidence            34667777777776             666665554      59999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEEcCCC
Q 024665          178 HRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       178 ~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~  223 (264)
                      +.-++.+.+++...  .|.++.+.|..+++.. ...++||.|++|+|+
T Consensus       276 ~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~-~~~~~fDRVLLDAPC  322 (460)
T KOG1122|consen  276 ENRLKSLKANLHRLGVTNTIVSNYDGREFPEK-EFPGSFDRVLLDAPC  322 (460)
T ss_pred             hHHHHHHHHHHHHhCCCceEEEccCccccccc-ccCcccceeeecCCC
Confidence            66555555555433  3899999999876532 233489999999994

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.26  E-value=2.3e-11  Score=104.63  Aligned_cols=102  Identities=28%  Similarity=0.307  Sum_probs=72.3

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhh-----cccCCCcc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY-----RMLVGMVD  215 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~-----~~~~~~fD  215 (264)
                      ++++.+|||||||||.++..+++.+++.++|+|||+++ +       + ..++|+++++|++++...     .....+||
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~-------~-~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D  119 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M-------D-PIVGVDFLQGDFRDELVLKALLERVGDSKVQ  119 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c-------c-CCCCcEEEecCCCChHHHHHHHHHhCCCCCC
Confidence            68899999999999999999999988788999999997 1       1 125799999999985310     12346899


Q ss_pred             EEEEcCCC-----c--hHHHHHHHHHhCCCcHHHHHHHHHHhh-cchhhh
Q 024665          216 VIFSDVAQ-----P--DQVCFLCLILFQPIVINNLQSVNNETK-GGIFEF  257 (264)
Q Consensus       216 ~V~~d~p~-----~--~~~~~~~~~~l~~~~~~~l~~~~~~Lk-~g~f~~  257 (264)
                      +|++|+..     +  +......   +   ....+..+.+.|+ +|.|.+
T Consensus       120 ~V~S~~~~~~~g~~~~d~~~~~~---~---~~~~L~~~~~~LkpGG~~vi  163 (209)
T PRK11188        120 VVMSDMAPNMSGTPAVDIPRAMY---L---VELALDMCRDVLAPGGSFVV  163 (209)
T ss_pred             EEecCCCCccCCChHHHHHHHHH---H---HHHHHHHHHHHcCCCCEEEE
Confidence            99999842     1  1111100   1   2345666677777 666644

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.26  E-value=1.2e-10  Score=103.54  Aligned_cols=96  Identities=23%  Similarity=0.151  Sum_probs=75.8

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh-----cCCCeEEEEcCCCCchhhcccCCCc
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK-----KRTNVIPIIEDARHPAKYRMLVGMV  214 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~-----~~~nV~~i~~D~~~~~~~~~~~~~f  214 (264)
                      .++++++|||+|||+|.++..+++.+++.++|+|+|+|+.|++.+.+...     ...||+++++|+.+++   ...++|
T Consensus        70 ~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp---~~~~sf  146 (261)
T PLN02233         70 GAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP---FDDCYF  146 (261)
T ss_pred             CCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC---CCCCCE
Confidence            47789999999999999999999988777899999999999766554332     1248999999998865   245689


Q ss_pred             cEEEEcCC-----CchHHHHHHHHHhCCC
Q 024665          215 DVIFSDVA-----QPDQVCFLCLILFQPI  238 (264)
Q Consensus       215 D~V~~d~p-----~~~~~~~~~~~~l~~~  238 (264)
                      |+|++...     .+..........++|+
T Consensus       147 D~V~~~~~l~~~~d~~~~l~ei~rvLkpG  175 (261)
T PLN02233        147 DAITMGYGLRNVVDRLKAMQEMYRVLKPG  175 (261)
T ss_pred             eEEEEecccccCCCHHHHHHHHHHHcCcC
Confidence            99988543     5666677777777776

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.26  E-value=1.2e-10  Score=99.75  Aligned_cols=91  Identities=19%  Similarity=0.248  Sum_probs=69.9

Q ss_pred             HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCCC
Q 024665          127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARH  203 (264)
Q Consensus       127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~~  203 (264)
                      .+.+.++..++   ++++++|||+|||+|.++..+++.+++.++|+++|+++.+++...++....   .+++++++|+.+
T Consensus        59 ~~~~~~~~~l~---~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~  135 (205)
T PRK13944         59 HMVAMMCELIE---PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKR  135 (205)
T ss_pred             HHHHHHHHhcC---CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCccc
Confidence            44555555554   889999999999999999999999877789999999998865544433322   369999999987


Q ss_pred             chhhcccCCCccEEEEcCCC
Q 024665          204 PAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       204 ~~~~~~~~~~fD~V~~d~p~  223 (264)
                      ..+   ...+||+|+++.+.
T Consensus       136 ~~~---~~~~fD~Ii~~~~~  152 (205)
T PRK13944        136 GLE---KHAPFDAIIVTAAA  152 (205)
T ss_pred             CCc---cCCCccEEEEccCc
Confidence            442   23589999998764

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.25  E-value=4.7e-11  Score=99.70  Aligned_cols=89  Identities=21%  Similarity=0.126  Sum_probs=70.9

Q ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC-CCeEEEEcCCCCc
Q 024665          126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHP  204 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~-~nV~~i~~D~~~~  204 (264)
                      ..+++.++..+.....-.+..|+|+|||||.+++.++.+  ....|+|||+++++++-+.+++.+. .+|.+++.|+.++
T Consensus        28 ~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~l--Ga~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~  105 (198)
T COG2263          28 APLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALL--GASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDF  105 (198)
T ss_pred             hHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhc--CCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhc
Confidence            345666654443335667889999999999999999976  4669999999998887766666543 3899999999986


Q ss_pred             hhhcccCCCccEEEEcCC
Q 024665          205 AKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       205 ~~~~~~~~~fD~V~~d~p  222 (264)
                      .      ..+|.|++|||
T Consensus       106 ~------~~~dtvimNPP  117 (198)
T COG2263         106 R------GKFDTVIMNPP  117 (198)
T ss_pred             C------CccceEEECCC
Confidence            5      68999999999

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.24  E-value=1.3e-10  Score=100.64  Aligned_cols=96  Identities=18%  Similarity=0.118  Sum_probs=72.5

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc--CCCeEEEEcCCCCchhhcccCCCccEE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--RTNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~--~~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      .++++++|||+|||+|.++..+++.+++.++|+++|+++.+++.+.+....  ..++++++.|+.+.+   ...++||+|
T Consensus        42 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~V  118 (231)
T TIGR02752        42 NVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP---FDDNSFDYV  118 (231)
T ss_pred             CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC---CCCCCccEE
Confidence            378899999999999999999999987788999999998886555544332  248999999998754   234689999


Q ss_pred             EEcCC-----CchHHHHHHHHHhCCC
Q 024665          218 FSDVA-----QPDQVCFLCLILFQPI  238 (264)
Q Consensus       218 ~~d~p-----~~~~~~~~~~~~l~~~  238 (264)
                      +++..     .+.+........++|+
T Consensus       119 ~~~~~l~~~~~~~~~l~~~~~~Lk~g  144 (231)
T TIGR02752       119 TIGFGLRNVPDYMQVLREMYRVVKPG  144 (231)
T ss_pred             EEecccccCCCHHHHHHHHHHHcCcC
Confidence            98644     3444444455566665

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.24  E-value=6.3e-11  Score=101.91  Aligned_cols=95  Identities=27%  Similarity=0.376  Sum_probs=70.2

Q ss_pred             chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc--CCCeEEEEcCCC
Q 024665          125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--RTNVIPIIEDAR  202 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~--~~nV~~i~~D~~  202 (264)
                      .+.+.+.++..|+   ++|+++|||+|||||+.+..||.++++.++|++||+++.+++...+....  ..||+++++|..
T Consensus        57 ~P~~~a~~l~~L~---l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~  133 (209)
T PF01135_consen   57 APSMVARMLEALD---LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGS  133 (209)
T ss_dssp             -HHHHHHHHHHTT---C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GG
T ss_pred             HHHHHHHHHHHHh---cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchh
Confidence            3567777777777   99999999999999999999999999899999999998775444333222  239999999987


Q ss_pred             CchhhcccCCCccEEEEcCCCch
Q 024665          203 HPAKYRMLVGMVDVIFSDVAQPD  225 (264)
Q Consensus       203 ~~~~~~~~~~~fD~V~~d~p~~~  225 (264)
                      ...+   ...+||+|++....+.
T Consensus       134 ~g~~---~~apfD~I~v~~a~~~  153 (209)
T PF01135_consen  134 EGWP---EEAPFDRIIVTAAVPE  153 (209)
T ss_dssp             GTTG---GG-SEEEEEESSBBSS
T ss_pred             hccc---cCCCcCEEEEeeccch
Confidence            6442   2358999999877543

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.21  E-value=2.1e-11  Score=94.28  Aligned_cols=111  Identities=21%  Similarity=0.194  Sum_probs=73.2

Q ss_pred             CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      |.+|||+|||+|++++.+++..  ..+++++|+++.+++-+......   ..++++++.|+++.... ...++||+|++|
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~~~~~D~Iv~n   77 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEP-LPDGKFDLIVTN   77 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHT-CTTT-EEEEEE-
T ss_pred             CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhh-ccCceeEEEEEC
Confidence            5689999999999999999885  56999999998775443333332   34799999999886522 235789999999


Q ss_pred             CCCchHHHHHHHHHhCCCcHHHHHHHHHHhh-cchhhhhh
Q 024665          221 VAQPDQVCFLCLILFQPIVINNLQSVNNETK-GGIFEFLF  259 (264)
Q Consensus       221 ~p~~~~~~~~~~~~l~~~~~~~l~~~~~~Lk-~g~f~~l~  259 (264)
                      +|......  ............+.++.+.|+ +|.+.+++
T Consensus        78 pP~~~~~~--~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~  115 (117)
T PF13659_consen   78 PPYGPRSG--DKAALRRLYSRFLEAAARLLKPGGVLVFIT  115 (117)
T ss_dssp             -STTSBTT------GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCccccc--cchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            99422100  000111123455777778888 77776654

...

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.20  E-value=1.1e-10  Score=110.28  Aligned_cols=107  Identities=25%  Similarity=0.152  Sum_probs=81.9

Q ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC--CeEEEEcCCCC
Q 024665          126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT--NVIPIIEDARH  203 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~--nV~~i~~D~~~  203 (264)
                      .+|...++..++   ..++++|||+.||.|+++++||..+   .+|+|+|+++.+++.+.++|+.+.  |++++.+|+.+
T Consensus       279 ekl~~~a~~~~~---~~~~~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~  352 (432)
T COG2265         279 EKLYETALEWLE---LAGGERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEE  352 (432)
T ss_pred             HHHHHHHHHHHh---hcCCCEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHH
Confidence            345555555554   7788999999999999999999764   499999999988877777776553  89999999998


Q ss_pred             chhhcccCCCccEEEEcCC--CchHHHHHHHHHhCCC
Q 024665          204 PAKYRMLVGMVDVIFSDVA--QPDQVCFLCLILFQPI  238 (264)
Q Consensus       204 ~~~~~~~~~~fD~V~~d~p--~~~~~~~~~~~~l~~~  238 (264)
                      +.+.......+|.|++|||  --+......+..+.|.
T Consensus       353 ~~~~~~~~~~~d~VvvDPPR~G~~~~~lk~l~~~~p~  389 (432)
T COG2265         353 FTPAWWEGYKPDVVVVDPPRAGADREVLKQLAKLKPK  389 (432)
T ss_pred             HhhhccccCCCCEEEECCCCCCCCHHHHHHHHhcCCC
Confidence            7653212247899999999  3444566667777776

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.18  E-value=1.1e-10  Score=103.18  Aligned_cols=100  Identities=19%  Similarity=0.163  Sum_probs=73.2

Q ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCch
Q 024665          126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPA  205 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~  205 (264)
                      .+....++..+.   +.++.+|||+|||+|.++..++..+ +..+|+++|+|+.|++..    .. .++++++.|+.++.
T Consensus        15 ~~~~~~ll~~l~---~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a----~~-~~~~~~~~d~~~~~   85 (255)
T PRK14103         15 GRPFYDLLARVG---AERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAA----RE-RGVDARTGDVRDWK   85 (255)
T ss_pred             hCHHHHHHHhCC---CCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHH----Hh-cCCcEEEcChhhCC
Confidence            333444444433   7788999999999999999999886 567999999999775443    22 37899999997653


Q ss_pred             hhcccCCCccEEEEcCC-----CchHHHHHHHHHhCCC
Q 024665          206 KYRMLVGMVDVIFSDVA-----QPDQVCFLCLILFQPI  238 (264)
Q Consensus       206 ~~~~~~~~fD~V~~d~p-----~~~~~~~~~~~~l~~~  238 (264)
                          ..++||+|+++..     .+........+.++|+
T Consensus        86 ----~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg  119 (255)
T PRK14103         86 ----PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPG  119 (255)
T ss_pred             ----CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCC
Confidence                2368999999865     3444555556667776

>PRK14967 putative methyltransferase; Provisional

Probab=99.18  E-value=1.5e-10  Score=100.32  Aligned_cols=77  Identities=27%  Similarity=0.213  Sum_probs=60.2

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC-CCeEEEEcCCCCchhhcccCCCccEEE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIF  218 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~-~nV~~i~~D~~~~~~~~~~~~~fD~V~  218 (264)
                      .++++++|||+|||+|.+++.++..  ...+|+++|+|+.+++...+++... .++++++.|+.+..    ..++||+|+
T Consensus        33 ~~~~~~~vLDlGcG~G~~~~~la~~--~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~----~~~~fD~Vi  106 (223)
T PRK14967         33 GLGPGRRVLDLCTGSGALAVAAAAA--GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAV----EFRPFDVVV  106 (223)
T ss_pred             ccCCCCeEEEecCCHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhc----cCCCeeEEE
Confidence            4788999999999999999999875  3458999999988765544443322 36889999987642    236899999


Q ss_pred             EcCC
Q 024665          219 SDVA  222 (264)
Q Consensus       219 ~d~p  222 (264)
                      +|+|
T Consensus       107 ~npP  110 (223)
T PRK14967        107 SNPP  110 (223)
T ss_pred             ECCC
Confidence            9988

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=99.17  E-value=1.6e-10  Score=98.68  Aligned_cols=77  Identities=26%  Similarity=0.327  Sum_probs=52.7

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHH---HHHhhcCCCeEEEEcCCCCchhhcccCCCccEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDL---VNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l---~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      ++++++|||+.||.|.+++.+|.. .....|+|+|++|.+.+.+   ++.|+...+|+++++|++++..    ...+|.|
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~-~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~----~~~~drv  173 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKH-GKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP----EGKFDRV  173 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHH-T-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-------TT-EEEE
T ss_pred             CCcceEEEEccCCccHHHHHHhhh-cCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC----ccccCEE
Confidence            789999999999999999999985 3456899999998775444   4455555579999999988753    4789999


Q ss_pred             EEcCC
Q 024665          218 FSDVA  222 (264)
Q Consensus       218 ~~d~p  222 (264)
                      +++.|
T Consensus       174 im~lp  178 (200)
T PF02475_consen  174 IMNLP  178 (200)
T ss_dssp             EE--T
T ss_pred             EECCh
Confidence            99977

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.16  E-value=3.9e-10  Score=99.51  Aligned_cols=103  Identities=21%  Similarity=0.220  Sum_probs=64.5

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC---CeEEEEcCCCCchhhcccCCCccEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT---NVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~---nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      +.++.+|||+|||+|.+++.++.. + ..+|+++|+|+.+++...++...+.   ++.+...|           .+||+|
T Consensus       117 ~~~~~~VLDiGcGsG~l~i~~~~~-g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~-----------~~fD~V  183 (250)
T PRK00517        117 VLPGKTVLDVGCGSGILAIAAAKL-G-AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD-----------LKADVI  183 (250)
T ss_pred             cCCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC-----------CCcCEE
Confidence            568899999999999999887764 3 3479999999988765555443321   12221111           279999


Q ss_pred             EEcCCCch--HHHHHHHHHhCCC--------cHHHHHHHHHHhhcchhh
Q 024665          218 FSDVAQPD--QVCFLCLILFQPI--------VINNLQSVNNETKGGIFE  256 (264)
Q Consensus       218 ~~d~p~~~--~~~~~~~~~l~~~--------~~~~l~~~~~~Lk~g~f~  256 (264)
                      ++|.....  .........++|.        ...+...+.+.++...|.
T Consensus       184 vani~~~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~  232 (250)
T PRK00517        184 VANILANPLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFT  232 (250)
T ss_pred             EEcCcHHHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCE
Confidence            99876322  2233445556665        344455555556533343

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.16  E-value=3.1e-10  Score=100.27  Aligned_cols=93  Identities=13%  Similarity=-0.008  Sum_probs=64.7

Q ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCch
Q 024665          126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPA  205 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~  205 (264)
                      ..++..++..+.  ...+..+|||+|||+|.+++.++... +..+|+++|+|+.+++.+.+++.. .++++++.|+.+..
T Consensus        71 e~Lv~~~l~~~~--~~~~~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~-~~~~~~~~D~~~~l  146 (251)
T TIGR03704        71 EFLVDEAAALAR--PRSGTLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLAD-AGGTVHEGDLYDAL  146 (251)
T ss_pred             HHHHHHHHHhhc--ccCCCCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHH-cCCEEEEeechhhc
Confidence            345554443332  12234689999999999999999875 356899999999887555444433 34689999987643


Q ss_pred             hhcccCCCccEEEEcCCC
Q 024665          206 KYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       206 ~~~~~~~~fD~V~~d~p~  223 (264)
                      .. ...++||+|++|||.
T Consensus       147 ~~-~~~~~fDlVv~NPPy  163 (251)
T TIGR03704       147 PT-ALRGRVDILAANAPY  163 (251)
T ss_pred             ch-hcCCCEeEEEECCCC
Confidence            21 123579999999993

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.16  E-value=6.2e-10  Score=93.71  Aligned_cols=91  Identities=20%  Similarity=0.126  Sum_probs=64.0

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      ++.+|||+|||+|.+++.+|.. .+.++|+++|.|+.+++.+.+.+.+.  .||+++++|+.+..    ..++||+|+++
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~-~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~----~~~~fD~I~s~  116 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIA-RPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ----HEEQFDVITSR  116 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHH-CCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc----ccCCccEEEeh
Confidence            4789999999999999999865 46789999999987754443333222  37999999998753    24689999998


Q ss_pred             CC-CchHHHHHHHHHhCCC
Q 024665          221 VA-QPDQVCFLCLILFQPI  238 (264)
Q Consensus       221 ~p-~~~~~~~~~~~~l~~~  238 (264)
                      .- ..........+.++|.
T Consensus       117 ~~~~~~~~~~~~~~~Lkpg  135 (181)
T TIGR00138       117 ALASLNVLLELTLNLLKVG  135 (181)
T ss_pred             hhhCHHHHHHHHHHhcCCC
Confidence            52 1222223334445555

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.15  E-value=3.8e-10  Score=95.79  Aligned_cols=82  Identities=17%  Similarity=0.159  Sum_probs=64.3

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      +..+|||+|||+|.++..+|... |...|+++|+++.+++.+.+.+...  .||+++++|+.++.........+|.|+++
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~   94 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN   94 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence            55699999999999999999875 6779999999998876665554432  39999999998754321223489999999


Q ss_pred             CCCch
Q 024665          221 VAQPD  225 (264)
Q Consensus       221 ~p~~~  225 (264)
                      .|.||
T Consensus        95 ~pdpw   99 (194)
T TIGR00091        95 FPDPW   99 (194)
T ss_pred             CCCcC
Confidence            98765

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PLN02244 tocopherol O-methyltransferase

Probab=99.15  E-value=4.9e-10  Score=103.18  Aligned_cols=92  Identities=15%  Similarity=0.136  Sum_probs=67.6

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCCCchhhcccCCCccEEE
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIF  218 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~~~~~~~~~~~~fD~V~  218 (264)
                      +++++|||+|||+|.++..+++..  ..+|++||+|+.+++...+.+...   .+|+++++|+.+.+   ...+.||+|+
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~---~~~~~FD~V~  191 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP---FEDGQFDLVW  191 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC---CCCCCccEEE
Confidence            678999999999999999999875  458999999998876655544332   47999999998754   2457899999


Q ss_pred             EcCC-----CchHHHHHHHHHhCCC
Q 024665          219 SDVA-----QPDQVCFLCLILFQPI  238 (264)
Q Consensus       219 ~d~p-----~~~~~~~~~~~~l~~~  238 (264)
                      +...     .+..........++|+
T Consensus       192 s~~~~~h~~d~~~~l~e~~rvLkpG  216 (340)
T PLN02244        192 SMESGEHMPDKRKFVQELARVAAPG  216 (340)
T ss_pred             ECCchhccCCHHHHHHHHHHHcCCC
Confidence            8543     2223333444555554

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.15  E-value=2.5e-10  Score=94.74  Aligned_cols=78  Identities=19%  Similarity=0.173  Sum_probs=63.9

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      .+.++++|||+|||+|.++..+++.   ..+|+++|+++.+++.+.+......|++++++|+.+...   ....||+|++
T Consensus        10 ~~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~---~~~~~d~vi~   83 (169)
T smart00650       10 NLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDL---PKLQPYKVVG   83 (169)
T ss_pred             CCCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCc---cccCCCEEEE
Confidence            4788999999999999999999987   358999999998877666555444589999999988642   2236999999


Q ss_pred             cCCC
Q 024665          220 DVAQ  223 (264)
Q Consensus       220 d~p~  223 (264)
                      |+|.
T Consensus        84 n~Py   87 (169)
T smart00650       84 NLPY   87 (169)
T ss_pred             CCCc
Confidence            9994

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.15  E-value=3.4e-10  Score=96.64  Aligned_cols=93  Identities=14%  Similarity=0.020  Sum_probs=64.9

Q ss_pred             chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCC
Q 024665          125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDAR  202 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~  202 (264)
                      ...+...++..+.  ...++.+|||+|||+|.+++.++..  ...+|++||+++++++.+.++....  .|+++++.|+.
T Consensus        37 ~d~v~e~l~~~l~--~~~~~~~vLDl~~GsG~l~l~~lsr--~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~  112 (199)
T PRK10909         37 TDRVRETLFNWLA--PVIVDARCLDCFAGSGALGLEALSR--YAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNAL  112 (199)
T ss_pred             CHHHHHHHHHHHh--hhcCCCEEEEcCCCccHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHH
Confidence            4455444554443  2356789999999999999975544  2459999999988765544433322  37999999987


Q ss_pred             CchhhcccCCCccEEEEcCCC
Q 024665          203 HPAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       203 ~~~~~~~~~~~fD~V~~d~p~  223 (264)
                      +....  ...+||+|++|||.
T Consensus       113 ~~l~~--~~~~fDlV~~DPPy  131 (199)
T PRK10909        113 SFLAQ--PGTPHNVVFVDPPF  131 (199)
T ss_pred             HHHhh--cCCCceEEEECCCC
Confidence            64421  23479999999993

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.14  E-value=7.1e-10  Score=99.72  Aligned_cols=76  Identities=22%  Similarity=0.146  Sum_probs=60.1

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCCCchhhcccCCCccEEE
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIF  218 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~~~~~~~~~~~~fD~V~  218 (264)
                      ++..+|||+|||+|.+++.++... +..+|+++|+|+.+++.+.+++...   .+|++++.|+.+..    ...+||+|+
T Consensus       120 ~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~----~~~~fD~Iv  194 (284)
T TIGR03533       120 EPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAAL----PGRKYDLIV  194 (284)
T ss_pred             CCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc----CCCCccEEE
Confidence            445799999999999999999875 4679999999988865555544332   37999999986532    124799999


Q ss_pred             EcCC
Q 024665          219 SDVA  222 (264)
Q Consensus       219 ~d~p  222 (264)
                      +|||
T Consensus       195 ~NPP  198 (284)
T TIGR03533       195 SNPP  198 (284)
T ss_pred             ECCC
Confidence            9999

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.14  E-value=7e-10  Score=98.65  Aligned_cols=76  Identities=13%  Similarity=0.141  Sum_probs=61.4

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      .++++.+|||+|||+|..+..++...  .++|+++|+|+.++..+.+.+....+|.+++.|+.+.+   ...++||+|++
T Consensus        49 ~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~---~~~~~FD~V~s  123 (263)
T PTZ00098         49 ELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKD---FPENTFDMIYS  123 (263)
T ss_pred             CCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCC---CCCCCeEEEEE
Confidence            48999999999999999999998763  46899999999887666655544458999999997643   23468999998


Q ss_pred             c
Q 024665          220 D  220 (264)
Q Consensus       220 d  220 (264)
                      .
T Consensus       124 ~  124 (263)
T PTZ00098        124 R  124 (263)
T ss_pred             h
Confidence            4

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.13  E-value=1.6e-09  Score=84.01  Aligned_cols=100  Identities=24%  Similarity=0.350  Sum_probs=71.4

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc--CCCeEEEEcCCCCchhhcccCCCccEE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--RTNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~--~~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      .+.++++|||+|||+|.++..+++.+ +..+|+++|+|+.+++.+.+....  ..+++++..|+.+...  ...++||+|
T Consensus        16 ~~~~~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~D~v   92 (124)
T TIGR02469        16 RLRPGDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALE--DSLPEPDRV   92 (124)
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccCh--hhcCCCCEE
Confidence            47788899999999999999999986 357999999998776555443332  2379999999875322  133689999


Q ss_pred             EEcCCCchHHHHHHHHHhCCCcHHHHHHHHHHhh-cchh
Q 024665          218 FSDVAQPDQVCFLCLILFQPIVINNLQSVNNETK-GGIF  255 (264)
Q Consensus       218 ~~d~p~~~~~~~~~~~~l~~~~~~~l~~~~~~Lk-~g~f  255 (264)
                      +++.+...             ....+..+.+.|+ +|.|
T Consensus        93 ~~~~~~~~-------------~~~~l~~~~~~Lk~gG~l  118 (124)
T TIGR02469        93 FIGGSGGL-------------LQEILEAIWRRLRPGGRI  118 (124)
T ss_pred             EECCcchh-------------HHHHHHHHHHHcCCCCEE
Confidence            98753211             1245667777777 5554

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.13  E-value=2.2e-09  Score=90.43  Aligned_cols=105  Identities=20%  Similarity=0.203  Sum_probs=73.9

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIF  218 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~  218 (264)
                      +.++.+|||+|||+|.+++.++... +..+|+++|+|+.+++.+.+.....  .++++++.|+...     +..+||+|+
T Consensus        29 ~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~-----~~~~~D~v~  102 (187)
T PRK08287         29 LHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE-----LPGKADAIF  102 (187)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh-----cCcCCCEEE
Confidence            7788999999999999999999874 6789999999988865555443322  3799999997432     235899999


Q ss_pred             EcCC--CchHHHHHHHHHhCCC--------cHHHHHHHHHHhh
Q 024665          219 SDVA--QPDQVCFLCLILFQPI--------VINNLQSVNNETK  251 (264)
Q Consensus       219 ~d~p--~~~~~~~~~~~~l~~~--------~~~~l~~~~~~Lk  251 (264)
                      ++..  ..........+.++|.        ......++.+.++
T Consensus       103 ~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~  145 (187)
T PRK08287        103 IGGSGGNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLE  145 (187)
T ss_pred             ECCCccCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHH
Confidence            9765  2333334455666766        2334455555555

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.13  E-value=1.1e-09  Score=92.72  Aligned_cols=93  Identities=24%  Similarity=0.221  Sum_probs=67.8

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIF  218 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~  218 (264)
                      ++++.+|||+|||+|..++.++... +.++|+++|+|+.+++.+.+.+...  .|+++++.|+.+...    .++||+|+
T Consensus        43 l~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~----~~~fDlV~  117 (187)
T PRK00107         43 LPGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ----EEKFDVVT  117 (187)
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC----CCCccEEE
Confidence            5568999999999999999999864 6789999999988765554444332  369999999987542    46899999


Q ss_pred             EcCC-CchHHHHHHHHHhCCC
Q 024665          219 SDVA-QPDQVCFLCLILFQPI  238 (264)
Q Consensus       219 ~d~p-~~~~~~~~~~~~l~~~  238 (264)
                      ++.- .+........+.++|.
T Consensus       118 ~~~~~~~~~~l~~~~~~LkpG  138 (187)
T PRK00107        118 SRAVASLSDLVELCLPLLKPG  138 (187)
T ss_pred             EccccCHHHHHHHHHHhcCCC
Confidence            9753 2333333444555555

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.12  E-value=3.2e-10  Score=107.96  Aligned_cols=106  Identities=21%  Similarity=0.169  Sum_probs=74.5

Q ss_pred             HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCc
Q 024665          127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHP  204 (264)
Q Consensus       127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~  204 (264)
                      .+...++..+.   +.++++|||+|||+|.+++.+|...   .+|+|+|+|+.|++.+.+++..+  .|++++++|+.+.
T Consensus       284 ~l~~~vl~~l~---~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~  357 (443)
T PRK13168        284 KMVARALEWLD---PQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEED  357 (443)
T ss_pred             HHHHHHHHHhc---CCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHh
Confidence            34444544443   7788999999999999999999874   48999999998877766655433  3899999999764


Q ss_pred             hh-hcccCCCccEEEEcCCCch-HHHHHHHHHhCCC
Q 024665          205 AK-YRMLVGMVDVIFSDVAQPD-QVCFLCLILFQPI  238 (264)
Q Consensus       205 ~~-~~~~~~~fD~V~~d~p~~~-~~~~~~~~~l~~~  238 (264)
                      .. ......+||+|++|||... ......+..+.+.
T Consensus       358 l~~~~~~~~~fD~Vi~dPPr~g~~~~~~~l~~~~~~  393 (443)
T PRK13168        358 FTDQPWALGGFDKVLLDPPRAGAAEVMQALAKLGPK  393 (443)
T ss_pred             hhhhhhhcCCCCEEEECcCCcChHHHHHHHHhcCCC
Confidence            21 1112357999999999432 2223444555555

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.11  E-value=3.3e-10  Score=99.75  Aligned_cols=77  Identities=21%  Similarity=0.216  Sum_probs=61.2

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcccCCCccE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVDV  216 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~~~~fD~  216 (264)
                      +.++.+|||+|||+|..+..++..+ .+..+|+++|+|+.|++...+....   ..+|+++++|+.+.+     ...+|+
T Consensus        54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~D~  128 (247)
T PRK15451         54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA-----IENASM  128 (247)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC-----CCCCCE
Confidence            5688999999999999999998864 4678999999999987666555432   237999999998754     246899


Q ss_pred             EEEcCC
Q 024665          217 IFSDVA  222 (264)
Q Consensus       217 V~~d~p  222 (264)
                      |+++..
T Consensus       129 vv~~~~  134 (247)
T PRK15451        129 VVLNFT  134 (247)
T ss_pred             EehhhH
Confidence            997644

>PRK08317 hypothetical protein; Provisional

Probab=99.11  E-value=1.5e-09  Score=93.46  Aligned_cols=108  Identities=23%  Similarity=0.242  Sum_probs=76.5

Q ss_pred             chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHH-hhcCCCeEEEEcCCCC
Q 024665          125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNM-AKKRTNVIPIIEDARH  203 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~-a~~~~nV~~i~~D~~~  203 (264)
                      ...+...++..+   .+.++++|||+|||+|.++..+++.+.+.++|+++|+++.+++...+. .....++++++.|+.+
T Consensus         4 ~~~~~~~~~~~~---~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~   80 (241)
T PRK08317          4 FRRYRARTFELL---AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADG   80 (241)
T ss_pred             HHHHHHHHHHHc---CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEeccccc
Confidence            333344444333   488999999999999999999999886778999999998776554443 1223489999999876


Q ss_pred             chhhcccCCCccEEEEcCC-----CchHHHHHHHHHhCCC
Q 024665          204 PAKYRMLVGMVDVIFSDVA-----QPDQVCFLCLILFQPI  238 (264)
Q Consensus       204 ~~~~~~~~~~fD~V~~d~p-----~~~~~~~~~~~~l~~~  238 (264)
                      .+   .....||+|+++..     .+.+......+.++|.
T Consensus        81 ~~---~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~g  117 (241)
T PRK08317         81 LP---FPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPG  117 (241)
T ss_pred             CC---CCCCCceEEEEechhhccCCHHHHHHHHHHHhcCC
Confidence            54   23468999998644     4445555555556655

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.11  E-value=6e-10  Score=98.27  Aligned_cols=101  Identities=15%  Similarity=0.129  Sum_probs=72.7

Q ss_pred             HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchh
Q 024665          127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK  206 (264)
Q Consensus       127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~  206 (264)
                      +.+..++..+   .++++++|||+|||+|.++..+++.+ +..+|+++|+|+.+++.+.+.   ..++.+++.|+.+.. 
T Consensus        18 ~~~~~ll~~~---~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~---~~~~~~~~~d~~~~~-   89 (258)
T PRK01683         18 RPARDLLARV---PLENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSR---LPDCQFVEADIASWQ-   89 (258)
T ss_pred             cHHHHHHhhC---CCcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHh---CCCCeEEECchhccC-
Confidence            3455555444   37889999999999999999999886 567999999999876443332   247899999987653 


Q ss_pred             hcccCCCccEEEEcCC-----CchHHHHHHHHHhCCC
Q 024665          207 YRMLVGMVDVIFSDVA-----QPDQVCFLCLILFQPI  238 (264)
Q Consensus       207 ~~~~~~~fD~V~~d~p-----~~~~~~~~~~~~l~~~  238 (264)
                         ...+||+|+++..     .+..........++|+
T Consensus        90 ---~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg  123 (258)
T PRK01683         90 ---PPQALDLIFANASLQWLPDHLELFPRLVSLLAPG  123 (258)
T ss_pred             ---CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCC
Confidence               2358999999876     2334444455555555

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=8.1e-10  Score=94.20  Aligned_cols=90  Identities=24%  Similarity=0.283  Sum_probs=70.0

Q ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCC
Q 024665          126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARH  203 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~  203 (264)
                      +.+.+.++..|+   ++|+++|||+|||||+.+..||++++   +|+++|+.+..++.+.++....  .||+++++|...
T Consensus        58 P~~vA~m~~~L~---~~~g~~VLEIGtGsGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~  131 (209)
T COG2518          58 PHMVARMLQLLE---LKPGDRVLEIGTGSGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSK  131 (209)
T ss_pred             cHHHHHHHHHhC---CCCCCeEEEECCCchHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCccc
Confidence            456666776666   99999999999999999999999976   9999999987654443332221  389999999987


Q ss_pred             chhhcccCCCccEEEEcCCCc
Q 024665          204 PAKYRMLVGMVDVIFSDVAQP  224 (264)
Q Consensus       204 ~~~~~~~~~~fD~V~~d~p~~  224 (264)
                      -.+   ...+||+|++....+
T Consensus       132 G~~---~~aPyD~I~Vtaaa~  149 (209)
T COG2518         132 GWP---EEAPYDRIIVTAAAP  149 (209)
T ss_pred             CCC---CCCCcCEEEEeeccC
Confidence            542   236899999887743

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.10  E-value=1.2e-09  Score=93.46  Aligned_cols=82  Identities=16%  Similarity=0.183  Sum_probs=63.0

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCC-CCchhhcccCCCccEEE
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDA-RHPAKYRMLVGMVDVIF  218 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~-~~~~~~~~~~~~fD~V~  218 (264)
                      .+..+|||+|||+|.++..+++.. +..+|++||+|+.+++.+.+.....  .|+++++.|+ ..+... .....||+|+
T Consensus        39 ~~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~-~~~~~~D~V~  116 (202)
T PRK00121         39 NDAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDM-FPDGSLDRIY  116 (202)
T ss_pred             CCCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHH-cCccccceEE
Confidence            367899999999999999999875 5678999999998876666554332  4899999999 443321 2346899999


Q ss_pred             EcCCCch
Q 024665          219 SDVAQPD  225 (264)
Q Consensus       219 ~d~p~~~  225 (264)
                      ++.+.|+
T Consensus       117 ~~~~~p~  123 (202)
T PRK00121        117 LNFPDPW  123 (202)
T ss_pred             EECCCCC
Confidence            9877543

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.10  E-value=8.9e-10  Score=103.18  Aligned_cols=79  Identities=22%  Similarity=0.131  Sum_probs=61.6

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC-CCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~-~nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      ++++.+|||+|||+|.+++.++... +..+|+++|+|+.+++.+.+++... .+++++++|+.+...  ....+||+|++
T Consensus       249 l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l--~~~~~FDLIVS  325 (423)
T PRK14966        249 LPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDM--PSEGKWDIIVS  325 (423)
T ss_pred             cCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhcccc--ccCCCccEEEE
Confidence            3466799999999999999998764 5679999999998876665555433 379999999876421  11347999999


Q ss_pred             cCC
Q 024665          220 DVA  222 (264)
Q Consensus       220 d~p  222 (264)
                      |||
T Consensus       326 NPP  328 (423)
T PRK14966        326 NPP  328 (423)
T ss_pred             CCC
Confidence            999

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=99.10  E-value=9.8e-10  Score=100.45  Aligned_cols=152  Identities=23%  Similarity=0.259  Sum_probs=97.2

Q ss_pred             eeeeccee-eceEEEecCCcccccccccCCCceeeeee--EEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCC
Q 024665           68 KVVVEPHR-HEGVFIAKGKEDALVTKNLVAGEAVYNEK--RISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPG  144 (264)
Q Consensus        68 k~~i~~~~-~~g~~~~~~~~d~l~~~~~~~g~~vy~e~--~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g  144 (264)
                      |-++..++ ..|.|..+. -+.|...+  ..++++.|+  ++.++-   +++.   |+|.-   +.+=...++  ..++|
T Consensus       124 k~V~~k~~~v~G~~R~~~-le~laGe~--~teTihrE~G~~f~vD~---~Kv~---Fsprl---~~ER~Rva~--~v~~G  189 (341)
T COG2520         124 KAVLLKEGPVAGEFRVPR-LEVLAGER--RTETIHRENGCRFKVDV---AKVY---FSPRL---STERARVAE--LVKEG  189 (341)
T ss_pred             eEEEEecCccCCeEeccc-eEEeecCC--CceEEEecCCEEEEEch---HHeE---ECCCc---hHHHHHHHh--hhcCC
Confidence            34444444 677776642 22344444  345566554  223222   3322   44433   333322222  25679


Q ss_pred             CEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC---CeEEEEcCCCCchhhcccCCCccEEEEcC
Q 024665          145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT---NVIPIIEDARHPAKYRMLVGMVDVIFSDV  221 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~---nV~~i~~D~~~~~~~~~~~~~fD~V~~d~  221 (264)
                      ++|||+.||.|.+|+.+|..-  ...|||+|++|.+.+.+.++++++.   .|+++++|+++....   ...+|.|+++.
T Consensus       190 E~V~DmFAGVGpfsi~~Ak~g--~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~---~~~aDrIim~~  264 (341)
T COG2520         190 ETVLDMFAGVGPFSIPIAKKG--RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPE---LGVADRIIMGL  264 (341)
T ss_pred             CEEEEccCCcccchhhhhhcC--CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhc---cccCCEEEeCC
Confidence            999999999999999999883  3349999999988766666655543   599999999987632   26899999999


Q ss_pred             CC-chHHHHHHHHHhCCC
Q 024665          222 AQ-PDQVCFLCLILFQPI  238 (264)
Q Consensus       222 p~-~~~~~~~~~~~l~~~  238 (264)
                      |. .++....++..++..
T Consensus       265 p~~a~~fl~~A~~~~k~~  282 (341)
T COG2520         265 PKSAHEFLPLALELLKDG  282 (341)
T ss_pred             CCcchhhHHHHHHHhhcC
Confidence            83 455556666665555

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.10  E-value=1.7e-10  Score=103.11  Aligned_cols=76  Identities=22%  Similarity=0.264  Sum_probs=51.7

Q ss_pred             cccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCCCchhhcccCCC
Q 024665          137 DNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGM  213 (264)
Q Consensus       137 ~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~~~~~~~~~~~~  213 (264)
                      +++.++||++|||+|||.|.+++.+|+..  .++|++|.+|+...+.+.+.+...   .+|++.+.|.+++.      .+
T Consensus        56 ~~~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~------~~  127 (273)
T PF02353_consen   56 EKLGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP------GK  127 (273)
T ss_dssp             TTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---------S
T ss_pred             HHhCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC------CC
Confidence            44459999999999999999999999996  468999999976655554444433   37999999987754      49


Q ss_pred             ccEEEEc
Q 024665          214 VDVIFSD  220 (264)
Q Consensus       214 fD~V~~d  220 (264)
                      ||.|++-
T Consensus       128 fD~IvSi  134 (273)
T PF02353_consen  128 FDRIVSI  134 (273)
T ss_dssp             -SEEEEE
T ss_pred             CCEEEEE
Confidence            9999974

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.09  E-value=4.4e-09  Score=89.21  Aligned_cols=95  Identities=19%  Similarity=0.208  Sum_probs=69.2

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIF  218 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~  218 (264)
                      ++++++|||+|||+|.+++.++... +.++|+++|+|+.+++.+.++....  .|+++++.|+.+...  .+...+|.|+
T Consensus        38 ~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~--~~~~~~d~v~  114 (196)
T PRK07402         38 LEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLA--QLAPAPDRVC  114 (196)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHh--hCCCCCCEEE
Confidence            7889999999999999999998764 5679999999998876655544332  479999999865321  2334578888


Q ss_pred             EcCCCc-hHHHHHHHHHhCCC
Q 024665          219 SDVAQP-DQVCFLCLILFQPI  238 (264)
Q Consensus       219 ~d~p~~-~~~~~~~~~~l~~~  238 (264)
                      ++...+ ..........++|.
T Consensus       115 ~~~~~~~~~~l~~~~~~Lkpg  135 (196)
T PRK07402        115 IEGGRPIKEILQAVWQYLKPG  135 (196)
T ss_pred             EECCcCHHHHHHHHHHhcCCC
Confidence            876533 34444555566776

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.09  E-value=1e-09  Score=97.65  Aligned_cols=96  Identities=27%  Similarity=0.318  Sum_probs=72.6

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      .++++++|||+|||+|.+++.++..+++.++|+++|+++.+++.+.+.....  .+++++++|+.+++   ...+.||+|
T Consensus        74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~---~~~~~fD~V  150 (272)
T PRK11873         74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALP---VADNSVDVI  150 (272)
T ss_pred             cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCC---CCCCceeEE
Confidence            4789999999999999999999988888889999999998865555443322  48999999987754   234589999


Q ss_pred             EEcCC-----CchHHHHHHHHHhCCC
Q 024665          218 FSDVA-----QPDQVCFLCLILFQPI  238 (264)
Q Consensus       218 ~~d~p-----~~~~~~~~~~~~l~~~  238 (264)
                      +++..     .+..........++|+
T Consensus       151 i~~~v~~~~~d~~~~l~~~~r~LkpG  176 (272)
T PRK11873        151 ISNCVINLSPDKERVFKEAFRVLKPG  176 (272)
T ss_pred             EEcCcccCCCCHHHHHHHHHHHcCCC
Confidence            98754     3334455556666666

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.08  E-value=9.3e-10  Score=92.01  Aligned_cols=74  Identities=18%  Similarity=0.187  Sum_probs=58.4

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC-CCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~-~nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      ..++.+|||+|||+|.++..++...  . +|+++|+|+.+++.+.++.... .++++++.|+.+..     .++||+|++
T Consensus        17 ~~~~~~vLdlG~G~G~~~~~l~~~~--~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-----~~~fD~Vi~   88 (179)
T TIGR00537        17 ELKPDDVLEIGAGTGLVAIRLKGKG--K-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV-----RGKFDVILF   88 (179)
T ss_pred             hcCCCeEEEeCCChhHHHHHHHhcC--C-EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc-----CCcccEEEE
Confidence            4556799999999999999999873  2 8999999998876555444322 37899999987643     358999999


Q ss_pred             cCC
Q 024665          220 DVA  222 (264)
Q Consensus       220 d~p  222 (264)
                      |+|
T Consensus        89 n~p   91 (179)
T TIGR00537        89 NPP   91 (179)
T ss_pred             CCC
Confidence            998

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>TIGR00740 methyltransferase, putative

Probab=99.08  E-value=9e-10  Score=96.26  Aligned_cols=94  Identities=14%  Similarity=0.167  Sum_probs=68.3

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcccCCCcc
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVD  215 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~~~~fD  215 (264)
                      .+.++.+|||+|||+|.++..+++.+. +..+|+++|+|+.|++.+.+....   ..+++++++|+.+.+     ...+|
T Consensus        50 ~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~d  124 (239)
T TIGR00740        50 FVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE-----IKNAS  124 (239)
T ss_pred             hCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-----CCCCC
Confidence            356888999999999999999998753 678999999999887665554332   237999999998754     24689


Q ss_pred             EEEEcCC---C----chHHHHHHHHHhCCC
Q 024665          216 VIFSDVA---Q----PDQVCFLCLILFQPI  238 (264)
Q Consensus       216 ~V~~d~p---~----~~~~~~~~~~~l~~~  238 (264)
                      +|++..+   .    +........+.++|+
T Consensus       125 ~v~~~~~l~~~~~~~~~~~l~~i~~~Lkpg  154 (239)
T TIGR00740       125 MVILNFTLQFLPPEDRIALLTKIYEGLNPN  154 (239)
T ss_pred             EEeeecchhhCCHHHHHHHHHHHHHhcCCC
Confidence            9888755   1    123334445556665

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=99.08  E-value=2.3e-09  Score=95.10  Aligned_cols=86  Identities=20%  Similarity=0.212  Sum_probs=68.5

Q ss_pred             HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchh
Q 024665          127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK  206 (264)
Q Consensus       127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~  206 (264)
                      .++..++..++   +.++++|||+|||+|.+|..+++..   .+|+++|+++++++.+.+......|++++++|+.+...
T Consensus        16 ~~~~~iv~~~~---~~~~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~   89 (258)
T PRK14896         16 RVVDRIVEYAE---DTDGDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDL   89 (258)
T ss_pred             HHHHHHHHhcC---CCCcCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCc
Confidence            45555655444   7889999999999999999999882   48999999998877766554434689999999987541


Q ss_pred             hcccCCCccEEEEcCCC
Q 024665          207 YRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       207 ~~~~~~~fD~V~~d~p~  223 (264)
                           ..||.|++|+|.
T Consensus        90 -----~~~d~Vv~NlPy  101 (258)
T PRK14896         90 -----PEFNKVVSNLPY  101 (258)
T ss_pred             -----hhceEEEEcCCc
Confidence                 358999999993

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.07  E-value=2.1e-09  Score=98.21  Aligned_cols=92  Identities=28%  Similarity=0.367  Sum_probs=69.8

Q ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCC
Q 024665          126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARH  203 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~  203 (264)
                      +.+.+.++..++   ++++++|||+|||+|.++..+|+.++..++|+++|+++.+++.+.+.....  .||+++++|+.+
T Consensus        66 p~l~a~ll~~L~---i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~  142 (322)
T PRK13943         66 PSLMALFMEWVG---LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYY  142 (322)
T ss_pred             HHHHHHHHHhcC---CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhh
Confidence            445555555544   889999999999999999999999866678999999998865554443322  489999999876


Q ss_pred             chhhcccCCCccEEEEcCCC
Q 024665          204 PAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       204 ~~~~~~~~~~fD~V~~d~p~  223 (264)
                      ...   ....||+|+++...
T Consensus       143 ~~~---~~~~fD~Ii~~~g~  159 (322)
T PRK13943        143 GVP---EFAPYDVIFVTVGV  159 (322)
T ss_pred             ccc---ccCCccEEEECCch
Confidence            542   12579999998663

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.07  E-value=1.7e-09  Score=91.15  Aligned_cols=74  Identities=38%  Similarity=0.385  Sum_probs=58.6

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhh-----cccCCCc
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY-----RMLVGMV  214 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~-----~~~~~~f  214 (264)
                      .++++++|||+|||+|.++..++..+.+.++|+++|+|+.+         ..+++++++.|+.+....     ....+.|
T Consensus        29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~   99 (188)
T TIGR00438        29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PIENVDFIRGDFTDEEVLNKIRERVGDDKV   99 (188)
T ss_pred             ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cCCCceEEEeeCCChhHHHHHHHHhCCCCc
Confidence            47899999999999999999999988767799999999732         235789999998774311     0123579


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+|++|.+
T Consensus       100 D~V~~~~~  107 (188)
T TIGR00438       100 DVVMSDAA  107 (188)
T ss_pred             cEEEcCCC
Confidence            99999864

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.07  E-value=8.7e-10  Score=102.61  Aligned_cols=78  Identities=13%  Similarity=0.027  Sum_probs=59.1

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC-----CCeEEEEcCCCCchhhcccCCCcc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-----TNVIPIIEDARHPAKYRMLVGMVD  215 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~-----~nV~~i~~D~~~~~~~~~~~~~fD  215 (264)
                      .....+|||||||+|.+++.+++.. |..+|+++|+|+.+++...++...+     .+++++..|+.+..    ...+||
T Consensus       226 ~~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~----~~~~fD  300 (378)
T PRK15001        226 ENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV----EPFRFN  300 (378)
T ss_pred             cccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccC----CCCCEE
Confidence            3345699999999999999999874 6789999999988765544433222     26899999886532    124899


Q ss_pred             EEEEcCCC
Q 024665          216 VIFSDVAQ  223 (264)
Q Consensus       216 ~V~~d~p~  223 (264)
                      +|++|||.
T Consensus       301 lIlsNPPf  308 (378)
T PRK15001        301 AVLCNPPF  308 (378)
T ss_pred             EEEECcCc
Confidence            99999994

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.06  E-value=1.3e-09  Score=99.86  Aligned_cols=89  Identities=18%  Similarity=0.107  Sum_probs=67.4

Q ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCC
Q 024665          126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARH  203 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~  203 (264)
                      +.++..+++...   ++++++|||++||+|++++.++..   ..+|+++|++++|++....+....  .++++++.|+++
T Consensus       168 ~~la~~~~~l~~---~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~  241 (329)
T TIGR01177       168 PKLARAMVNLAR---VTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATK  241 (329)
T ss_pred             HHHHHHHHHHhC---CCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhc
Confidence            456666664443   789999999999999999887764   458999999998875544433321  368899999988


Q ss_pred             chhhcccCCCccEEEEcCCC
Q 024665          204 PAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       204 ~~~~~~~~~~fD~V~~d~p~  223 (264)
                      .+.   ..++||+|++|||.
T Consensus       242 l~~---~~~~~D~Iv~dPPy  258 (329)
T TIGR01177       242 LPL---SSESVDAIATDPPY  258 (329)
T ss_pred             CCc---ccCCCCEEEECCCC
Confidence            652   24689999999993

This family is found exclusively in the Archaea.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.06  E-value=5.3e-10  Score=101.89  Aligned_cols=92  Identities=16%  Similarity=0.023  Sum_probs=67.9

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      .++.+|||+|||+|.+++.+|..   ..+|+++|+++.+++.+.+.+...  .|++++++|+.++...  ..+.||+|++
T Consensus       172 ~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~--~~~~~D~Vv~  246 (315)
T PRK03522        172 LPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA--QGEVPDLVLV  246 (315)
T ss_pred             cCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh--cCCCCeEEEE
Confidence            35689999999999999999985   358999999998876665555433  3899999999775421  2347999999


Q ss_pred             cCCCc--hHHHHHHHHHhCCC
Q 024665          220 DVAQP--DQVCFLCLILFQPI  238 (264)
Q Consensus       220 d~p~~--~~~~~~~~~~l~~~  238 (264)
                      |||..  .......+....|.
T Consensus       247 dPPr~G~~~~~~~~l~~~~~~  267 (315)
T PRK03522        247 NPPRRGIGKELCDYLSQMAPR  267 (315)
T ss_pred             CCCCCCccHHHHHHHHHcCCC
Confidence            99943  23334455555555

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.06  E-value=9.9e-10  Score=102.15  Aligned_cols=84  Identities=19%  Similarity=0.199  Sum_probs=68.1

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIF  218 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~  218 (264)
                      ...+..|||||||+|.+++++|... |...++|+|+++.++..+.+.+...  .||.++++|+..+... ...+++|.|+
T Consensus       120 ~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~-~~~~s~D~I~  197 (390)
T PRK14121        120 KNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLEL-LPSNSVEKIF  197 (390)
T ss_pred             CCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhh-CCCCceeEEE
Confidence            4556799999999999999999985 6789999999988877766665543  4999999999765322 3356899999


Q ss_pred             EcCCCchH
Q 024665          219 SDVAQPDQ  226 (264)
Q Consensus       219 ~d~p~~~~  226 (264)
                      ++.|.||.
T Consensus       198 lnFPdPW~  205 (390)
T PRK14121        198 VHFPVPWD  205 (390)
T ss_pred             EeCCCCcc
Confidence            99998874

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.05  E-value=1.5e-09  Score=101.86  Aligned_cols=81  Identities=17%  Similarity=0.032  Sum_probs=60.0

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---C-CCeEEEEcCCCCchhh-cccCCCcc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---R-TNVIPIIEDARHPAKY-RMLVGMVD  215 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~-~nV~~i~~D~~~~~~~-~~~~~~fD  215 (264)
                      +.++.+|||+|||+|.++++++.  ....+|++||+|+.+++.+.+++..   . .+++++++|+.+.... .....+||
T Consensus       218 ~~~g~rVLDlfsgtG~~~l~aa~--~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fD  295 (396)
T PRK15128        218 YVENKRVLNCFSYTGGFAVSALM--GGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFD  295 (396)
T ss_pred             hcCCCeEEEeccCCCHHHHHHHh--CCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCC
Confidence            34688999999999999987764  3456999999998876554444332   2 3799999999876421 11235899


Q ss_pred             EEEEcCCC
Q 024665          216 VIFSDVAQ  223 (264)
Q Consensus       216 ~V~~d~p~  223 (264)
                      +|++|||.
T Consensus       296 lVilDPP~  303 (396)
T PRK15128        296 VIVMDPPK  303 (396)
T ss_pred             EEEECCCC
Confidence            99999993

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.05  E-value=2.5e-09  Score=93.09  Aligned_cols=96  Identities=17%  Similarity=0.075  Sum_probs=81.2

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCC-----CEEEEEeCChHHHHHHHHHhhcC---C--CeEEEEcCCCCchhhcc
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPN-----GVVYAVEFSHRSGRDLVNMAKKR---T--NVIPIIEDARHPAKYRM  209 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~-----g~V~avD~s~~~~~~l~~~a~~~---~--nV~~i~~D~~~~~~~~~  209 (264)
                      .+.++++|||++||||-++..+.+.+...     .+|+.+|+|+.|+....+.++++   .  .++++++|+.+++   +
T Consensus        97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp---F  173 (296)
T KOG1540|consen   97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP---F  173 (296)
T ss_pred             CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC---C
Confidence            47888999999999999999999999754     79999999999977777777433   2  4999999999987   4


Q ss_pred             cCCCccEEEE-----cCCCchHHHHHHHHHhCCC
Q 024665          210 LVGMVDVIFS-----DVAQPDQVCFLCLILFQPI  238 (264)
Q Consensus       210 ~~~~fD~V~~-----d~p~~~~~~~~~~~~l~~~  238 (264)
                      ....||+..+     |.+.++.+...++..|+|+
T Consensus       174 dd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpG  207 (296)
T KOG1540|consen  174 DDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPG  207 (296)
T ss_pred             CCCcceeEEEecceecCCCHHHHHHHHHHhcCCC
Confidence            5678998875     5568889999999999998

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.05  E-value=1.7e-09  Score=92.16  Aligned_cols=75  Identities=20%  Similarity=0.172  Sum_probs=58.2

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIF  218 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~  218 (264)
                      +.+..+|||+|||+|..+..||+.   ..+|+++|+|+.+++.+.+.+...  .||++++.|+.+..    +.++||+|+
T Consensus        28 ~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~~fD~I~  100 (197)
T PRK11207         28 VVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLT----FDGEYDFIL  100 (197)
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCC----cCCCcCEEE
Confidence            556789999999999999999986   348999999998876655544332  36899999987653    235799999


Q ss_pred             EcCC
Q 024665          219 SDVA  222 (264)
Q Consensus       219 ~d~p  222 (264)
                      +...
T Consensus       101 ~~~~  104 (197)
T PRK11207        101 STVV  104 (197)
T ss_pred             Eecc
Confidence            8654

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.04  E-value=2.4e-09  Score=96.23  Aligned_cols=75  Identities=25%  Similarity=0.203  Sum_probs=58.7

Q ss_pred             CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      ..+|||+|||+|.+++.++... +..+|+++|+|+.+++.+.+++...   .+++++++|+.+..    ...+||+|++|
T Consensus       115 ~~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~----~~~~fDlIvsN  189 (284)
T TIGR00536       115 ILHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPL----AGQKIDIIVSN  189 (284)
T ss_pred             CCEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccC----cCCCccEEEEC
Confidence            3689999999999999999875 4569999999988865555544322   25999999987643    12379999999


Q ss_pred             CCC
Q 024665          221 VAQ  223 (264)
Q Consensus       221 ~p~  223 (264)
                      ||.
T Consensus       190 PPy  192 (284)
T TIGR00536       190 PPY  192 (284)
T ss_pred             CCC
Confidence            993

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.03  E-value=3.5e-09  Score=94.02  Aligned_cols=91  Identities=26%  Similarity=0.229  Sum_probs=67.6

Q ss_pred             chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh--cCCCeEEEEcCCC
Q 024665          125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK--KRTNVIPIIEDAR  202 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~--~~~nV~~i~~D~~  202 (264)
                      +..+...++..+   ...+..+|||+|||+|.+++.++... +..+|+++|+|+.+++.+.+...  ...++.+++.|+.
T Consensus        93 te~l~~~~~~~~---~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~  168 (275)
T PRK09328         93 TEELVEWALEAL---LLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWF  168 (275)
T ss_pred             cHHHHHHHHHhc---cccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEcccc
Confidence            344444444222   25677899999999999999999886 56799999999988665555443  2348999999986


Q ss_pred             CchhhcccCCCccEEEEcCCC
Q 024665          203 HPAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       203 ~~~~~~~~~~~fD~V~~d~p~  223 (264)
                      +...    ..+||+|++|+|.
T Consensus       169 ~~~~----~~~fD~Iv~npPy  185 (275)
T PRK09328        169 EPLP----GGRFDLIVSNPPY  185 (275)
T ss_pred             CcCC----CCceeEEEECCCc
Confidence            6431    3689999999993

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.03  E-value=2.3e-09  Score=101.70  Aligned_cols=95  Identities=15%  Similarity=0.069  Sum_probs=69.5

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchh-hcccCCCccEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAK-YRMLVGMVDVI  217 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~-~~~~~~~fD~V  217 (264)
                      +.++++|||+|||+|.+++.+|...   .+|+++|+++.+++.+.+++..+  .||+++++|+.+..+ .......||+|
T Consensus       290 ~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~v  366 (431)
T TIGR00479       290 LQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVL  366 (431)
T ss_pred             cCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEE
Confidence            6788999999999999999999874   38999999998876666555432  389999999976422 11123479999


Q ss_pred             EEcCCCc--hHHHHHHHHHhCCC
Q 024665          218 FSDVAQP--DQVCFLCLILFQPI  238 (264)
Q Consensus       218 ~~d~p~~--~~~~~~~~~~l~~~  238 (264)
                      ++|+|..  ....+..+..+.+.
T Consensus       367 i~dPPr~G~~~~~l~~l~~l~~~  389 (431)
T TIGR00479       367 LLDPPRKGCAAEVLRTIIELKPE  389 (431)
T ss_pred             EECcCCCCCCHHHHHHHHhcCCC
Confidence            9999943  23333444555665

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.03  E-value=5.8e-09  Score=89.54  Aligned_cols=89  Identities=24%  Similarity=0.242  Sum_probs=66.3

Q ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCC
Q 024665          126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARH  203 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~  203 (264)
                      +.+.+.++..+.   ++++++|||+|||+|.++..++...   .+|+++|+++.+++.+.+.....  .|+++++.|+.+
T Consensus        64 p~~~~~l~~~l~---~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~  137 (212)
T PRK00312         64 PYMVARMTELLE---LKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWK  137 (212)
T ss_pred             HHHHHHHHHhcC---CCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCccc
Confidence            345555554444   8899999999999999999998875   38999999988866555544322  379999999866


Q ss_pred             chhhcccCCCccEEEEcCCC
Q 024665          204 PAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       204 ~~~~~~~~~~fD~V~~d~p~  223 (264)
                      ..+   ..++||+|+++.+.
T Consensus       138 ~~~---~~~~fD~I~~~~~~  154 (212)
T PRK00312        138 GWP---AYAPFDRILVTAAA  154 (212)
T ss_pred             CCC---cCCCcCEEEEccCc
Confidence            431   23689999998764

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.02  E-value=3.5e-09  Score=96.24  Aligned_cols=74  Identities=22%  Similarity=0.123  Sum_probs=59.0

Q ss_pred             CEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCCCchhhcccCCCccEEEEcC
Q 024665          145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIFSDV  221 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~  221 (264)
                      .+|||+|||+|.+++.++... +..+|+++|+|+.+++.+.+++...   .+|++++.|+.+..    ...+||+|++||
T Consensus       135 ~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l----~~~~fDlIvsNP  209 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAAL----PGRRYDLIVSNP  209 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhC----CCCCccEEEECC
Confidence            689999999999999999874 5679999999998876555554432   36999999986633    124799999999


Q ss_pred             CC
Q 024665          222 AQ  223 (264)
Q Consensus       222 p~  223 (264)
                      |.
T Consensus       210 Py  211 (307)
T PRK11805        210 PY  211 (307)
T ss_pred             CC
Confidence            93

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.01  E-value=3.9e-09  Score=92.22  Aligned_cols=90  Identities=28%  Similarity=0.257  Sum_probs=66.4

Q ss_pred             chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCC
Q 024665          125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDAR  202 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~  202 (264)
                      +..++..++..+.    ....+|||+|||+|.++..++... +..+|+++|+++.+++.+.+.....  .|+++++.|+.
T Consensus        73 ~~~l~~~~l~~~~----~~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~  147 (251)
T TIGR03534        73 TEELVEAALERLK----KGPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWF  147 (251)
T ss_pred             hHHHHHHHHHhcc----cCCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchh
Confidence            3445555554332    244689999999999999999875 4669999999998876555544332  27999999997


Q ss_pred             CchhhcccCCCccEEEEcCCC
Q 024665          203 HPAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       203 ~~~~~~~~~~~fD~V~~d~p~  223 (264)
                      +..    ..++||+|++|+|.
T Consensus       148 ~~~----~~~~fD~Vi~npPy  164 (251)
T TIGR03534       148 EPL----PGGKFDLIVSNPPY  164 (251)
T ss_pred             ccC----cCCceeEEEECCCC
Confidence            643    24689999999993

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.01  E-value=1.1e-09  Score=93.10  Aligned_cols=75  Identities=23%  Similarity=0.156  Sum_probs=56.0

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC-CCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~-~nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      +.+..+|||+|||+|.++..+|+.   ..+|+++|+|+.+++.+.+.+... .++.+.+.|+....    +.++||+|++
T Consensus        28 ~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~----~~~~fD~I~~  100 (195)
T TIGR00477        28 TVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAA----LNEDYDFIFS  100 (195)
T ss_pred             cCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcc----ccCCCCEEEE
Confidence            445679999999999999999985   358999999998876655544322 25777788875432    2357999998


Q ss_pred             cCC
Q 024665          220 DVA  222 (264)
Q Consensus       220 d~p  222 (264)
                      ..+
T Consensus       101 ~~~  103 (195)
T TIGR00477       101 TVV  103 (195)
T ss_pred             ecc
Confidence            754

Part of a tellurite-reducing operon tehA and tehB

>PHA03412 putative methyltransferase; Provisional

Probab=99.00  E-value=1.5e-09  Score=94.42  Aligned_cols=112  Identities=13%  Similarity=0.011  Sum_probs=72.5

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC--CCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG--PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~--~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      .+.+|||+|||+|.+++.++..+.  +..+|++||+++.+++.+.+.   ..++.+++.|+.+..    ...+||+|++|
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n---~~~~~~~~~D~~~~~----~~~~FDlIIsN  121 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRI---VPEATWINADALTTE----FDTLFDMAISN  121 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhh---ccCCEEEEcchhccc----ccCCccEEEEC
Confidence            367999999999999999998753  356899999999875444322   236899999997643    24689999999


Q ss_pred             CCCchHHHHHHHHHhCCC---cHHHHHHHHHHhhcchhhhhhhhhc
Q 024665          221 VAQPDQVCFLCLILFQPI---VINNLQSVNNETKGGIFEFLFSLFL  263 (264)
Q Consensus       221 ~p~~~~~~~~~~~~l~~~---~~~~l~~~~~~Lk~g~f~~l~~~~~  263 (264)
                      ||.-....... ...+..   ....+..+.+.++.|.| ++=+.++
T Consensus       122 PPY~~~~~~d~-~ar~~g~~~~~~li~~A~~Ll~~G~~-ILP~~~~  165 (241)
T PHA03412        122 PPFGKIKTSDF-KGKYTGAEFEYKVIERASQIARQGTF-IIPQMSA  165 (241)
T ss_pred             CCCCCcccccc-CCcccccHHHHHHHHHHHHHcCCCEE-EeCcccc
Confidence            99432211100 111111   33345555554556666 5544433

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.00  E-value=2.4e-09  Score=90.75  Aligned_cols=94  Identities=15%  Similarity=0.062  Sum_probs=64.4

Q ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh---cCCCeEEEEcCCC
Q 024665          126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK---KRTNVIPIIEDAR  202 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~---~~~nV~~i~~D~~  202 (264)
                      +.+-..+.+.+.  ..-++.+|||++||+|.+++.++.+  .+.+|++||.++.+++.+.+++.   ...++++++.|+.
T Consensus        34 ~~vrea~f~~l~--~~~~g~~vLDLfaGsG~lglea~sr--ga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~  109 (189)
T TIGR00095        34 RVVRELFFNILR--PEIQGAHLLDVFAGSGLLGEEALSR--GAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSAL  109 (189)
T ss_pred             HHHHHHHHHHHH--HhcCCCEEEEecCCCcHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHH
Confidence            334444444443  2346889999999999999999987  34589999999877644444333   2247899999996


Q ss_pred             CchhhcccC-CCccEEEEcCCC
Q 024665          203 HPAKYRMLV-GMVDVIFSDVAQ  223 (264)
Q Consensus       203 ~~~~~~~~~-~~fD~V~~d~p~  223 (264)
                      +........ ..+|+|++|||.
T Consensus       110 ~~l~~~~~~~~~~dvv~~DPPy  131 (189)
T TIGR00095       110 RALKFLAKKPTFDNVIYLDPPF  131 (189)
T ss_pred             HHHHHhhccCCCceEEEECcCC
Confidence            643210111 248999999994

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.00  E-value=2.1e-09  Score=96.48  Aligned_cols=71  Identities=27%  Similarity=0.330  Sum_probs=56.4

Q ss_pred             EEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665          146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       146 ~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      +|||+|||||.+++.+|... +...|+|+|+|+++++-+.+++...  .|+.+++.|..+..     .++||+|++|||
T Consensus       113 ~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~-----~~~fDlIVsNPP  185 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPL-----RGKFDLIVSNPP  185 (280)
T ss_pred             cEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccccc-----CCceeEEEeCCC
Confidence            79999999999999999885 5679999999998865544444433  36777777876643     359999999999

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=98.99  E-value=1.9e-09  Score=81.65  Aligned_cols=71  Identities=21%  Similarity=0.240  Sum_probs=53.9

Q ss_pred             EEEEcccCChHHHHHHHHh--CCCCEEEEEeCChHHHHHHHHHhhcC-CCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          147 VLYLGAASGTTVSHVSDIV--GPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       147 VLDlG~G~G~~s~~la~~~--~~~g~V~avD~s~~~~~~l~~~a~~~-~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      |||+|||+|..+..+++.+  ++..+++++|+|++|++...+..... .++++++.|+.+++.   ..++||+|++.
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~---~~~~~D~v~~~   74 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPF---SDGKFDLVVCS   74 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHH---HSSSEEEEEE-
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcc---cCCCeeEEEEc
Confidence            7999999999999999987  33469999999999876666655433 389999999998653   45699999993

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.99  E-value=2.2e-09  Score=79.00  Aligned_cols=92  Identities=18%  Similarity=0.166  Sum_probs=66.3

Q ss_pred             EEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCCCchHH
Q 024665          148 LYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQV  227 (264)
Q Consensus       148 LDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~~~~~  227 (264)
                      ||+|||+|..+..+++.  +...|+++|+++.+++.+.+... ..++.+++.|+++++   ...++||+|++.....   
T Consensus         1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~-~~~~~~~~~d~~~l~---~~~~sfD~v~~~~~~~---   71 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLK-NEGVSFRQGDAEDLP---FPDNSFDVVFSNSVLH---   71 (95)
T ss_dssp             EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTT-TSTEEEEESBTTSSS---S-TT-EEEEEEESHGG---
T ss_pred             CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhccc-ccCchheeehHHhCc---ccccccccccccccee---
Confidence            89999999999999998  56799999999988766555443 447889999999875   3567999999864311   


Q ss_pred             HHHHHHHhCCCcHHHHHHHHHHhh-cchh
Q 024665          228 CFLCLILFQPIVINNLQSVNNETK-GGIF  255 (264)
Q Consensus       228 ~~~~~~~l~~~~~~~l~~~~~~Lk-~g~f  255 (264)
                             +.+.....+.++.+.|| +|.+
T Consensus        72 -------~~~~~~~~l~e~~rvLk~gG~l   93 (95)
T PF08241_consen   72 -------HLEDPEAALREIYRVLKPGGRL   93 (95)
T ss_dssp             -------GSSHHHHHHHHHHHHEEEEEEE
T ss_pred             -------eccCHHHHHHHHHHHcCcCeEE
Confidence                   11335566778888888 6554

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.99  E-value=2.3e-09  Score=91.24  Aligned_cols=89  Identities=30%  Similarity=0.344  Sum_probs=67.6

Q ss_pred             chHHHHHHHhcccccC-CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCC
Q 024665          125 RSKLAAAVLGGVDNIW-IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARH  203 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~-l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~  203 (264)
                      +|.-+-.++...++.. +++++.|+||||++|.|+..+++++++.+.|+|||+.|-      +   .-++|.++++|+++
T Consensus        26 RSRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~------~---~~~~V~~iq~d~~~   96 (205)
T COG0293          26 RSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM------K---PIPGVIFLQGDITD   96 (205)
T ss_pred             cchHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc------c---cCCCceEEeeeccC
Confidence            4555555554444443 688999999999999999999999998889999999971      1   23479999999998


Q ss_pred             chhhcc----cC-CCccEEEEcCC
Q 024665          204 PAKYRM----LV-GMVDVIFSDVA  222 (264)
Q Consensus       204 ~~~~~~----~~-~~fD~V~~d~p  222 (264)
                      ......    +. ..+|+|++|++
T Consensus        97 ~~~~~~l~~~l~~~~~DvV~sD~a  120 (205)
T COG0293          97 EDTLEKLLEALGGAPVDVVLSDMA  120 (205)
T ss_pred             ccHHHHHHHHcCCCCcceEEecCC
Confidence            653311    12 25799999988

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.99  E-value=1.6e-09  Score=101.03  Aligned_cols=93  Identities=12%  Similarity=0.020  Sum_probs=68.6

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIF  218 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~  218 (264)
                      ..++.+|||++||+|.+++.+|..   ..+|++||+++.+++.+.+++...  .|+++++.|+.+....  ...+||+|+
T Consensus       231 ~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~--~~~~~D~vi  305 (374)
T TIGR02085       231 EIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATA--QMSAPELVL  305 (374)
T ss_pred             hcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHh--cCCCCCEEE
Confidence            346689999999999999999965   358999999998876666555433  3899999999765421  224699999


Q ss_pred             EcCCCc--hHHHHHHHHHhCCC
Q 024665          219 SDVAQP--DQVCFLCLILFQPI  238 (264)
Q Consensus       219 ~d~p~~--~~~~~~~~~~l~~~  238 (264)
                      +|||..  +...+..+..+.|.
T Consensus       306 ~DPPr~G~~~~~l~~l~~~~p~  327 (374)
T TIGR02085       306 VNPPRRGIGKELCDYLSQMAPK  327 (374)
T ss_pred             ECCCCCCCcHHHHHHHHhcCCC
Confidence            999932  34444555556665

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=98.98  E-value=5.7e-10  Score=96.57  Aligned_cols=91  Identities=22%  Similarity=0.242  Sum_probs=70.2

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC-CeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT-NVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~-nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      -++.+|||+|||-|.++..||+.   ...|+|+|+++++++.....+.... +|.+.+..+.++..   ..++||+|+|-
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~---~~~~FDvV~cm  131 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLAS---AGGQFDVVTCM  131 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHh---cCCCccEEEEh
Confidence            47899999999999999999987   3699999999988766666665443 56677777766542   23699999984


Q ss_pred             -----CCCchHHHHHHHHHhCCC
Q 024665          221 -----VAQPDQVCFLCLILFQPI  238 (264)
Q Consensus       221 -----~p~~~~~~~~~~~~l~~~  238 (264)
                           +|+|+.........++|.
T Consensus       132 EVlEHv~dp~~~~~~c~~lvkP~  154 (243)
T COG2227         132 EVLEHVPDPESFLRACAKLVKPG  154 (243)
T ss_pred             hHHHccCCHHHHHHHHHHHcCCC
Confidence                 557777666677777887

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=98.97  E-value=5.3e-09  Score=93.62  Aligned_cols=77  Identities=19%  Similarity=0.192  Sum_probs=58.8

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      ...++.+|||+|||.|.+++.+|+.. |..+|+-+|+|.++++-..++...+  .|.+++..|..+..     .++||.|
T Consensus       155 ~~~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v-----~~kfd~I  228 (300)
T COG2813         155 PPDLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV-----EGKFDLI  228 (300)
T ss_pred             CccCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccc-----cccccEE
Confidence            35556699999999999999999985 6889999999988765444443333  24467777776543     3599999


Q ss_pred             EEcCC
Q 024665          218 FSDVA  222 (264)
Q Consensus       218 ~~d~p  222 (264)
                      ++|||
T Consensus       229 isNPP  233 (300)
T COG2813         229 ISNPP  233 (300)
T ss_pred             EeCCC
Confidence            99999

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=98.96  E-value=6.8e-09  Score=95.69  Aligned_cols=76  Identities=13%  Similarity=0.103  Sum_probs=57.7

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC-CCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~-~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      ....+|||+|||+|.++..+++.. +..+|+++|+|+.+++...+....+ ...+++..|+.+.     ..+.||+|++|
T Consensus       195 ~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~-----~~~~fDlIvsN  268 (342)
T PRK09489        195 HTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD-----IKGRFDMIISN  268 (342)
T ss_pred             cCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc-----cCCCccEEEEC
Confidence            344589999999999999999874 5678999999998876555444333 2456777887542     24689999999


Q ss_pred             CCC
Q 024665          221 VAQ  223 (264)
Q Consensus       221 ~p~  223 (264)
                      +|.
T Consensus       269 PPF  271 (342)
T PRK09489        269 PPF  271 (342)
T ss_pred             CCc
Confidence            984

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=98.96  E-value=6.7e-09  Score=94.92  Aligned_cols=92  Identities=16%  Similarity=0.147  Sum_probs=68.2

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCCCchhhcccCCCccEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      +.++.+|||+|||+|.++..++..   ..+|++||+++++++.+.+.+...   .+|++++.|+.++..   ..++||+|
T Consensus       129 ~~~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~---~~~~FD~V  202 (322)
T PLN02396        129 PFEGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD---EGRKFDAV  202 (322)
T ss_pred             CCCCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh---ccCCCCEE
Confidence            456789999999999999999864   458999999998876655544332   389999999877542   34689999


Q ss_pred             EEcC-----CCchHHHHHHHHHhCCC
Q 024665          218 FSDV-----AQPDQVCFLCLILFQPI  238 (264)
Q Consensus       218 ~~d~-----p~~~~~~~~~~~~l~~~  238 (264)
                      ++.-     +.+..........++|+
T Consensus       203 i~~~vLeHv~d~~~~L~~l~r~LkPG  228 (322)
T PLN02396        203 LSLEVIEHVANPAEFCKSLSALTIPN  228 (322)
T ss_pred             EEhhHHHhcCCHHHHHHHHHHHcCCC
Confidence            9743     24555555566666666

>PRK14968 putative methyltransferase; Provisional

Probab=98.95  E-value=1e-08  Score=85.48  Aligned_cols=75  Identities=27%  Similarity=0.185  Sum_probs=58.3

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC--C--eEEEEcCCCCchhhcccCCCccE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT--N--VIPIIEDARHPAKYRMLVGMVDV  216 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~--n--V~~i~~D~~~~~~~~~~~~~fD~  216 (264)
                      ..++.+|||+|||+|.++..++..   ..+|+++|+|+.+++.+.+......  +  +.+++.|+.+..    ....||+
T Consensus        21 ~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~d~   93 (188)
T PRK14968         21 DKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF----RGDKFDV   93 (188)
T ss_pred             ccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc----cccCceE
Confidence            468889999999999999999987   3689999999888655544433221  2  889999987643    2247999


Q ss_pred             EEEcCC
Q 024665          217 IFSDVA  222 (264)
Q Consensus       217 V~~d~p  222 (264)
                      |++|+|
T Consensus        94 vi~n~p   99 (188)
T PRK14968         94 ILFNPP   99 (188)
T ss_pred             EEECCC
Confidence            999988

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.95  E-value=2.5e-09  Score=90.02  Aligned_cols=74  Identities=26%  Similarity=0.283  Sum_probs=58.3

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      ++|+++|||||||.|.+..+|.+.  ...+.++||++++.    +..+..+ -+.++++|+.+.... +...+||.|++.
T Consensus        11 I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~----v~~cv~r-Gv~Viq~Dld~gL~~-f~d~sFD~VIls   82 (193)
T PF07021_consen   11 IEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDN----VAACVAR-GVSVIQGDLDEGLAD-FPDQSFDYVILS   82 (193)
T ss_pred             cCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHH----HHHHHHc-CCCEEECCHHHhHhh-CCCCCccEEehH
Confidence            789999999999999999999987  46789999999854    3333222 577999999875432 456799999986


Q ss_pred             CC
Q 024665          221 VA  222 (264)
Q Consensus       221 ~p  222 (264)
                      -+
T Consensus        83 qt   84 (193)
T PF07021_consen   83 QT   84 (193)
T ss_pred             hH
Confidence            54

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.95  E-value=4.8e-09  Score=93.71  Aligned_cols=87  Identities=17%  Similarity=0.155  Sum_probs=66.8

Q ss_pred             HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchh
Q 024665          127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK  206 (264)
Q Consensus       127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~  206 (264)
                      .++..++..++   +.++++|||+|||+|.+|..+++..   .+|+++|+++++++.+.+... ..+++++++|+.+...
T Consensus        29 ~i~~~i~~~l~---~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~-~~~v~~i~~D~~~~~~  101 (272)
T PRK00274         29 NILDKIVDAAG---PQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFA-EDNLTIIEGDALKVDL  101 (272)
T ss_pred             HHHHHHHHhcC---CCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhc-cCceEEEEChhhcCCH
Confidence            45555655444   7889999999999999999999984   289999999988766655332 2689999999988642


Q ss_pred             hcccCCCccEEEEcCCC
Q 024665          207 YRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       207 ~~~~~~~fD~V~~d~p~  223 (264)
                      . .  -.+|.|++|+|.
T Consensus       102 ~-~--~~~~~vv~NlPY  115 (272)
T PRK00274        102 S-E--LQPLKVVANLPY  115 (272)
T ss_pred             H-H--cCcceEEEeCCc
Confidence            1 1  116999999993

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.95  E-value=6e-09  Score=92.03  Aligned_cols=92  Identities=22%  Similarity=0.199  Sum_probs=68.9

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcccCCCccEEE
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVDVIF  218 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~~~~fD~V~  218 (264)
                      .+..+|||+|||+|.++..+++.   ..+|+++|+|+.+++.+.+....   ..+++++++|+.+....  ..++||+|+
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~--~~~~fD~V~  117 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQH--LETPVDLIL  117 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhh--cCCCCCEEE
Confidence            45679999999999999999986   35899999999887665554433   24799999999876432  346899999


Q ss_pred             EcCC-----CchHHHHHHHHHhCCC
Q 024665          219 SDVA-----QPDQVCFLCLILFQPI  238 (264)
Q Consensus       219 ~d~p-----~~~~~~~~~~~~l~~~  238 (264)
                      +...     .|........+.++|+
T Consensus       118 ~~~vl~~~~~~~~~l~~~~~~Lkpg  142 (255)
T PRK11036        118 FHAVLEWVADPKSVLQTLWSVLRPG  142 (255)
T ss_pred             ehhHHHhhCCHHHHHHHHHHHcCCC
Confidence            8754     4555555556666666

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.94  E-value=5.1e-09  Score=94.55  Aligned_cols=86  Identities=21%  Similarity=0.269  Sum_probs=67.7

Q ss_pred             HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCC
Q 024665          127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARH  203 (264)
Q Consensus       127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~  203 (264)
                      .++..|+..+.   +.++++|||+|||+|.+|..+++..   .+|+|+|+++++++.+.+....   ..|++++++|+.+
T Consensus        23 ~i~~~Iv~~~~---~~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~   96 (294)
T PTZ00338         23 LVLDKIVEKAA---IKPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALK   96 (294)
T ss_pred             HHHHHHHHhcC---CCCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhh
Confidence            34555554444   7899999999999999999999873   4799999999998776655432   3589999999987


Q ss_pred             chhhcccCCCccEEEEcCCC
Q 024665          204 PAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       204 ~~~~~~~~~~fD~V~~d~p~  223 (264)
                      ..     ...||+|++|+|.
T Consensus        97 ~~-----~~~~d~VvaNlPY  111 (294)
T PTZ00338         97 TE-----FPYFDVCVANVPY  111 (294)
T ss_pred             hc-----ccccCEEEecCCc
Confidence            54     2468999999993

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.93  E-value=8.5e-09  Score=99.72  Aligned_cols=75  Identities=21%  Similarity=0.095  Sum_probs=59.2

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      +..+|||+|||||.+++.++... +..+|+++|+|+.+++.+.+++...   .+|++++.|+.+..    ...+||+|++
T Consensus       138 ~~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~----~~~~fDlIvs  212 (506)
T PRK01544        138 KFLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENI----EKQKFDFIVS  212 (506)
T ss_pred             CCCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhC----cCCCccEEEE
Confidence            35689999999999999999875 5679999999998876555544332   37999999986532    1358999999


Q ss_pred             cCC
Q 024665          220 DVA  222 (264)
Q Consensus       220 d~p  222 (264)
                      |||
T Consensus       213 NPP  215 (506)
T PRK01544        213 NPP  215 (506)
T ss_pred             CCC
Confidence            999

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.91  E-value=9.1e-09  Score=90.79  Aligned_cols=88  Identities=19%  Similarity=0.210  Sum_probs=71.4

Q ss_pred             HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchh
Q 024665          127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK  206 (264)
Q Consensus       127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~  206 (264)
                      ..+..|+..++   +.+++.|||+|+|.|.+|..|++...   +|+|||++++++..+.+......|++++++|+.+...
T Consensus        17 ~v~~kIv~~a~---~~~~d~VlEIGpG~GaLT~~Ll~~~~---~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~   90 (259)
T COG0030          17 NVIDKIVEAAN---ISPGDNVLEIGPGLGALTEPLLERAA---RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDF   90 (259)
T ss_pred             HHHHHHHHhcC---CCCCCeEEEECCCCCHHHHHHHhhcC---eEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcc
Confidence            34566665554   88899999999999999999999843   8999999999988877776656799999999988652


Q ss_pred             hcccCCCccEEEEcCC
Q 024665          207 YRMLVGMVDVIFSDVA  222 (264)
Q Consensus       207 ~~~~~~~fD~V~~d~p  222 (264)
                      . .+. .++.|++|.|
T Consensus        91 ~-~l~-~~~~vVaNlP  104 (259)
T COG0030          91 P-SLA-QPYKVVANLP  104 (259)
T ss_pred             h-hhc-CCCEEEEcCC
Confidence            1 011 7899999999

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=98.91  E-value=6.7e-09  Score=91.28  Aligned_cols=89  Identities=13%  Similarity=0.053  Sum_probs=63.6

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      ..+..+|||+|||+|.++..++..   ..+|+++|+|+.+++...+..   ..+.+++.|+.+.+   ...++||+|+++
T Consensus        40 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~---~~~~~~~~d~~~~~---~~~~~fD~V~s~  110 (251)
T PRK10258         40 QRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKD---AADHYLAGDIESLP---LATATFDLAWSN  110 (251)
T ss_pred             ccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhC---CCCCEEEcCcccCc---CCCCcEEEEEEC
Confidence            446789999999999999999865   358999999998754433322   24578899997754   234689999998


Q ss_pred             CC-----CchHHHHHHHHHhCCC
Q 024665          221 VA-----QPDQVCFLCLILFQPI  238 (264)
Q Consensus       221 ~p-----~~~~~~~~~~~~l~~~  238 (264)
                      .+     .+..........++|.
T Consensus       111 ~~l~~~~d~~~~l~~~~~~Lk~g  133 (251)
T PRK10258        111 LAVQWCGNLSTALRELYRVVRPG  133 (251)
T ss_pred             chhhhcCCHHHHHHHHHHHcCCC
Confidence            76     3344445555566665

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=98.91  E-value=1.6e-08  Score=86.69  Aligned_cols=74  Identities=19%  Similarity=0.267  Sum_probs=58.1

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      +.++.+|||+|||+|.++..++..+ +..+|++||+|+.+++.+.+.   .++++++++|+.++    ...++||+|+++
T Consensus        41 ~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~---~~~~~~~~~d~~~~----~~~~sfD~V~~~  112 (204)
T TIGR03587        41 LPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAY---LPNINIIQGSLFDP----FKDNFFDLVLTK  112 (204)
T ss_pred             cCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhh---CCCCcEEEeeccCC----CCCCCEEEEEEC
Confidence            5677899999999999999999875 457899999999886544332   24678889998873    235689999986


Q ss_pred             CC
Q 024665          221 VA  222 (264)
Q Consensus       221 ~p  222 (264)
                      ..
T Consensus       113 ~v  114 (204)
T TIGR03587       113 GV  114 (204)
T ss_pred             Ch
Confidence            54

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.91  E-value=3.2e-09  Score=98.30  Aligned_cols=90  Identities=28%  Similarity=0.196  Sum_probs=59.5

Q ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC--CeEEEEcCCCC
Q 024665          126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT--NVIPIIEDARH  203 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~--nV~~i~~D~~~  203 (264)
                      .++...++..++   ..++ +|||++||+|++++.||..+.   +|+|||+++.+++.+.+++..+.  |+++++.++.+
T Consensus       183 ~~l~~~~~~~l~---~~~~-~vlDlycG~G~fsl~la~~~~---~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~  255 (352)
T PF05958_consen  183 EKLYEQALEWLD---LSKG-DVLDLYCGVGTFSLPLAKKAK---KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED  255 (352)
T ss_dssp             HHHHHHHHHHCT---T-TT-EEEEES-TTTCCHHHHHCCSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred             HHHHHHHHHHhh---cCCC-cEEEEeecCCHHHHHHHhhCC---eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence            345555554444   5555 899999999999999998754   89999999998877777776554  99999988755


Q ss_pred             chhh----------c---ccCCCccEEEEcCC
Q 024665          204 PAKY----------R---MLVGMVDVIFSDVA  222 (264)
Q Consensus       204 ~~~~----------~---~~~~~fD~V~~d~p  222 (264)
                      +...          .   .....+|+|++|||
T Consensus       256 ~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPP  287 (352)
T PF05958_consen  256 FAKALAKAREFNRLKGIDLKSFKFDAVILDPP  287 (352)
T ss_dssp             CCCHHCCS-GGTTGGGS-GGCTTESEEEE---
T ss_pred             hhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCC
Confidence            3210          0   01126899999999

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.90  E-value=1.1e-08  Score=86.04  Aligned_cols=92  Identities=25%  Similarity=0.206  Sum_probs=62.9

Q ss_pred             chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCC--------EEEEEeCChHHHHHHHHHhh---cCCC
Q 024665          125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNG--------VVYAVEFSHRSGRDLVNMAK---KRTN  193 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g--------~V~avD~s~~~~~~l~~~a~---~~~n  193 (264)
                      ++.+++.++....   +++++.|||-.||+|++.+..|.......        +++++|+++++++...+++.   ....
T Consensus        13 ~~~lA~~ll~la~---~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~   89 (179)
T PF01170_consen   13 RPTLAAALLNLAG---WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDY   89 (179)
T ss_dssp             -HHHHHHHHHHTT-----TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGG
T ss_pred             CHHHHHHHHHHhC---CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCc
Confidence            4678888876555   88999999999999999999987765333        38999999888654444333   3336


Q ss_pred             eEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665          194 VIPIIEDARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       194 V~~i~~D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      |.+++.|+++++   ...+.+|+|++|||
T Consensus        90 i~~~~~D~~~l~---~~~~~~d~IvtnPP  115 (179)
T PF01170_consen   90 IDFIQWDARELP---LPDGSVDAIVTNPP  115 (179)
T ss_dssp             EEEEE--GGGGG---GTTSBSCEEEEE--
T ss_pred             eEEEecchhhcc---cccCCCCEEEECcc
Confidence            899999999877   23568999999999

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.90  E-value=6.9e-09  Score=93.56  Aligned_cols=95  Identities=17%  Similarity=0.158  Sum_probs=73.9

Q ss_pred             chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCc
Q 024665          125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHP  204 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~  204 (264)
                      .+-|..+++..|.   ++|+..+||++||.|..|..+++.+.+.++|||+|.++.+++...+......++++++.|..++
T Consensus         4 ~pVll~Evl~~L~---~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l   80 (296)
T PRK00050          4 IPVLLDEVVDALA---IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNL   80 (296)
T ss_pred             ccccHHHHHHhhC---CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHH
Confidence            4556677776665   7899999999999999999999998778999999999988655544332234899999999987


Q ss_pred             hhhccc-CCCccEEEEcCC
Q 024665          205 AKYRML-VGMVDVIFSDVA  222 (264)
Q Consensus       205 ~~~~~~-~~~fD~V~~d~p  222 (264)
                      ..+... ..+||.|++|.-
T Consensus        81 ~~~l~~~~~~vDgIl~DLG   99 (296)
T PRK00050         81 KEVLAEGLGKVDGILLDLG   99 (296)
T ss_pred             HHHHHcCCCccCEEEECCC
Confidence            653111 127999999865

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.90  E-value=8.5e-09  Score=88.91  Aligned_cols=106  Identities=21%  Similarity=0.150  Sum_probs=71.7

Q ss_pred             HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchh
Q 024665          127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK  206 (264)
Q Consensus       127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~  206 (264)
                      .++..++..+.........+|||+|||+|.++..+++.. +..+|+++|+++.+++.+.+...  .++.+++.|+.+.+ 
T Consensus        18 ~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~--~~~~~~~~d~~~~~-   93 (240)
T TIGR02072        18 EMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS--ENVQFICGDAEKLP-   93 (240)
T ss_pred             HHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC--CCCeEEecchhhCC-
Confidence            444445444443222344789999999999999999885 56789999999877654444332  48899999998754 


Q ss_pred             hcccCCCccEEEEcCC-----CchHHHHHHHHHhCCC
Q 024665          207 YRMLVGMVDVIFSDVA-----QPDQVCFLCLILFQPI  238 (264)
Q Consensus       207 ~~~~~~~fD~V~~d~p-----~~~~~~~~~~~~l~~~  238 (264)
                        ...++||+|+++..     .+........+.++|.
T Consensus        94 --~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~  128 (240)
T TIGR02072        94 --LEDSSFDLIVSNLALQWCDDLSQALSELARVLKPG  128 (240)
T ss_pred             --CCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCC
Confidence              23468999998765     2333334444445554

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.90  E-value=1e-08  Score=89.66  Aligned_cols=98  Identities=15%  Similarity=0.058  Sum_probs=70.9

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHH---HHhhcCCCeEEEEcCCCCchhhc---ccCCCc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLV---NMAKKRTNVIPIIEDARHPAKYR---MLVGMV  214 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~---~~a~~~~nV~~i~~D~~~~~~~~---~~~~~f  214 (264)
                      +.+..+|||+||++|+.++.++..+.+.++|+++|+++++++.+.   +.+....+|+++++|+.+..+.-   ...++|
T Consensus        66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f  145 (234)
T PLN02781         66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF  145 (234)
T ss_pred             HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence            566789999999999999999998877899999999987654333   33333457999999998754210   013589


Q ss_pred             cEEEEcCCC--chHHHHHHHHHhCCC
Q 024665          215 DVIFSDVAQ--PDQVCFLCLILFQPI  238 (264)
Q Consensus       215 D~V~~d~p~--~~~~~~~~~~~l~~~  238 (264)
                      |+||+|...  ........+..++|+
T Consensus       146 D~VfiDa~k~~y~~~~~~~~~ll~~G  171 (234)
T PLN02781        146 DFAFVDADKPNYVHFHEQLLKLVKVG  171 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHHhcCCC
Confidence            999999862  233444445556665

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=98.90  E-value=9.8e-09  Score=90.24  Aligned_cols=95  Identities=19%  Similarity=0.181  Sum_probs=65.7

Q ss_pred             HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHh---hcCCCeEEEEcCCCC
Q 024665          127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA---KKRTNVIPIIEDARH  203 (264)
Q Consensus       127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a---~~~~nV~~i~~D~~~  203 (264)
                      .+...++..+.+......+.+||+|||||.+++.++..+. .+.|+|||.|+.++.-..+++   .....|.+++.+.+.
T Consensus       132 E~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~  210 (328)
T KOG2904|consen  132 EWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMES  210 (328)
T ss_pred             HHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccc
Confidence            3445555555444344556999999999999999998875 889999999987754444433   333478888554432


Q ss_pred             --chhhcccCCCccEEEEcCC
Q 024665          204 --PAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       204 --~~~~~~~~~~fD~V~~d~p  222 (264)
                        ..++..+.++.|++++|||
T Consensus       211 d~~~~~~l~~~~~dllvsNPP  231 (328)
T KOG2904|consen  211 DASDEHPLLEGKIDLLVSNPP  231 (328)
T ss_pred             ccccccccccCceeEEecCCC
Confidence              1122245679999999999

>PHA03411 putative methyltransferase; Provisional

Probab=98.89  E-value=6.8e-09  Score=92.27  Aligned_cols=74  Identities=18%  Similarity=0.041  Sum_probs=58.6

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      .++..+|||+|||+|.+++.++.... ..+|+++|+|+.+++.+.+.   .+++++++.|+.++.    ...+||+|++|
T Consensus        62 ~~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n---~~~v~~v~~D~~e~~----~~~kFDlIIsN  133 (279)
T PHA03411         62 AHCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRL---LPEAEWITSDVFEFE----SNEKFDVVISN  133 (279)
T ss_pred             cccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHh---CcCCEEEECchhhhc----ccCCCcEEEEc
Confidence            44567999999999999999988742 45899999999886544332   247999999998754    23589999999


Q ss_pred             CC
Q 024665          221 VA  222 (264)
Q Consensus       221 ~p  222 (264)
                      +|
T Consensus       134 PP  135 (279)
T PHA03411        134 PP  135 (279)
T ss_pred             CC
Confidence            99

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.89  E-value=4.6e-09  Score=88.57  Aligned_cols=100  Identities=21%  Similarity=0.095  Sum_probs=64.3

Q ss_pred             CCcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh---cCCCeEEEE
Q 024665          122 NPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK---KRTNVIPII  198 (264)
Q Consensus       122 ~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~---~~~nV~~i~  198 (264)
                      .|...+.=..+.+.|... .-++.+||||+||||.+++.++.+  .+.+|+.||.++++++.+.++..   ...++++++
T Consensus        22 RPT~drvrealFniL~~~-~~~g~~vLDLFaGSGalGlEALSR--GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~   98 (183)
T PF03602_consen   22 RPTTDRVREALFNILQPR-NLEGARVLDLFAGSGALGLEALSR--GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIK   98 (183)
T ss_dssp             -SSSHHHHHHHHHHHHCH--HTT-EEEETT-TTSHHHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEE
T ss_pred             CCCcHHHHHHHHHHhccc-ccCCCeEEEcCCccCccHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeec
Confidence            344555666666666622 257999999999999999988777  56799999999877544444333   223699999


Q ss_pred             cCCCCchhh-cccCCCccEEEEcCCCc
Q 024665          199 EDARHPAKY-RMLVGMVDVIFSDVAQP  224 (264)
Q Consensus       199 ~D~~~~~~~-~~~~~~fD~V~~d~p~~  224 (264)
                      .|+...... .....+||+||+|||..
T Consensus        99 ~d~~~~l~~~~~~~~~fDiIflDPPY~  125 (183)
T PF03602_consen   99 GDAFKFLLKLAKKGEKFDIIFLDPPYA  125 (183)
T ss_dssp             SSHHHHHHHHHHCTS-EEEEEE--STT
T ss_pred             cCHHHHHHhhcccCCCceEEEECCCcc
Confidence            998765432 11346899999999943

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.88  E-value=1.1e-08  Score=84.84  Aligned_cols=75  Identities=16%  Similarity=0.255  Sum_probs=64.8

Q ss_pred             CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC-CeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665          144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT-NVIPIIEDARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~-nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      -+.+||+|||||..+..|+....+.....++|+++++.+.-.+.|+.+. ++.+++.|..+...    .+++|+++.|+|
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~----~~~VDvLvfNPP  119 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLR----NESVDVLVFNPP  119 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhc----cCCccEEEECCC
Confidence            5789999999999999999999999999999999988777677776543 78999999887542    389999999999

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=98.88  E-value=1.4e-08  Score=91.30  Aligned_cols=73  Identities=23%  Similarity=0.257  Sum_probs=57.1

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC-CCeEEEEcCCCCchhhcccCCCccEEEEcC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSDV  221 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~-~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~  221 (264)
                      +..+|||+|||+|..++.+|..   ..+|+|+|+|+.+++.+.+.+... .++++++.|+....    +.++||+|++..
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~----~~~~fD~I~~~~  192 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSAS----IQEEYDFILSTV  192 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhccc----ccCCccEEEEcc
Confidence            3459999999999999999985   358999999998877666555433 37889999986643    246899999865


Q ss_pred             C
Q 024665          222 A  222 (264)
Q Consensus       222 p  222 (264)
                      .
T Consensus       193 v  193 (287)
T PRK12335        193 V  193 (287)
T ss_pred             h
Confidence            3

>PRK05785 hypothetical protein; Provisional

Probab=98.87  E-value=1.4e-08  Score=88.43  Aligned_cols=86  Identities=14%  Similarity=0.086  Sum_probs=63.0

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcC
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDV  221 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~  221 (264)
                      .++.+|||+|||||.++..+++..  ..+|+++|+|+.|++...+    +  ..++++|+.+++   ...++||+|++..
T Consensus        50 ~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~----~--~~~~~~d~~~lp---~~d~sfD~v~~~~  118 (226)
T PRK05785         50 GRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLV----A--DDKVVGSFEALP---FRDKSFDVVMSSF  118 (226)
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHh----c--cceEEechhhCC---CCCCCEEEEEecC
Confidence            357899999999999999999875  3589999999988644332    2  246788988764   3457999999865


Q ss_pred             C-----CchHHHHHHHHHhCCC
Q 024665          222 A-----QPDQVCFLCLILFQPI  238 (264)
Q Consensus       222 p-----~~~~~~~~~~~~l~~~  238 (264)
                      .     .+.+........++|.
T Consensus       119 ~l~~~~d~~~~l~e~~RvLkp~  140 (226)
T PRK05785        119 ALHASDNIEKVIAEFTRVSRKQ  140 (226)
T ss_pred             hhhccCCHHHHHHHHHHHhcCc
Confidence            4     4455555555666653

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.87  E-value=7.7e-09  Score=96.08  Aligned_cols=76  Identities=20%  Similarity=0.041  Sum_probs=58.8

Q ss_pred             CEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhccc------------
Q 024665          145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRML------------  210 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~------------  210 (264)
                      .+|||++||+|++++.+|...   .+|++||+++.+++.+.+++..+  .|+++++.|+.+..+....            
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~  284 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDL  284 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccc
Confidence            579999999999999999874   38999999998887666655443  3899999999775421000            


Q ss_pred             -CCCccEEEEcCCC
Q 024665          211 -VGMVDVIFSDVAQ  223 (264)
Q Consensus       211 -~~~fD~V~~d~p~  223 (264)
                       ..+||+||+|||.
T Consensus       285 ~~~~~D~v~lDPPR  298 (362)
T PRK05031        285 KSYNFSTIFVDPPR  298 (362)
T ss_pred             cCCCCCEEEECCCC
Confidence             1258999999994

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.86  E-value=2.3e-08  Score=88.34  Aligned_cols=87  Identities=16%  Similarity=0.144  Sum_probs=67.9

Q ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCch
Q 024665          126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPA  205 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~  205 (264)
                      ..++..++..+.   +.++++|||+|||+|.+|..|++...   .|+++|+++++++.+.+......|+++++.|+.+.+
T Consensus        15 ~~i~~~i~~~~~---~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~   88 (253)
T TIGR00755        15 ESVIQKIVEAAN---VLEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVD   88 (253)
T ss_pred             HHHHHHHHHhcC---CCCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCC
Confidence            345666665554   77889999999999999999999853   699999999887766554433468999999998865


Q ss_pred             hhcccCCCcc---EEEEcCCC
Q 024665          206 KYRMLVGMVD---VIFSDVAQ  223 (264)
Q Consensus       206 ~~~~~~~~fD---~V~~d~p~  223 (264)
                      .     ..+|   +|++|+|.
T Consensus        89 ~-----~~~d~~~~vvsNlPy  104 (253)
T TIGR00755        89 L-----PDFPKQLKVVSNLPY  104 (253)
T ss_pred             h-----hHcCCcceEEEcCCh
Confidence            2     2355   99999994

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.86  E-value=3.7e-08  Score=94.45  Aligned_cols=94  Identities=18%  Similarity=0.151  Sum_probs=70.3

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhcccCCCccEEE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRMLVGMVDVIF  218 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~~~~fD~V~  218 (264)
                      .++++.+|||+|||+|.++..++...  ..+|+++|+|+.+++...+.+.. ..+|++++.|+.+.+   ...++||+|+
T Consensus       263 ~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~I~  337 (475)
T PLN02336        263 DLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKT---YPDNSFDVIY  337 (475)
T ss_pred             CCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCC---CCCCCEEEEE
Confidence            36788999999999999999999875  45899999999886655444432 347999999998754   1246899999


Q ss_pred             EcCC-----CchHHHHHHHHHhCCC
Q 024665          219 SDVA-----QPDQVCFLCLILFQPI  238 (264)
Q Consensus       219 ~d~p-----~~~~~~~~~~~~l~~~  238 (264)
                      +...     .+........+.++|+
T Consensus       338 s~~~l~h~~d~~~~l~~~~r~Lkpg  362 (475)
T PLN02336        338 SRDTILHIQDKPALFRSFFKWLKPG  362 (475)
T ss_pred             ECCcccccCCHHHHHHHHHHHcCCC
Confidence            8644     3455555666666666

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.85  E-value=9.4e-09  Score=103.08  Aligned_cols=79  Identities=20%  Similarity=0.036  Sum_probs=60.9

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh---cC-CCeEEEEcCCCCchhhcccCCCccE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK---KR-TNVIPIIEDARHPAKYRMLVGMVDV  216 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~---~~-~nV~~i~~D~~~~~~~~~~~~~fD~  216 (264)
                      +.++.+|||+|||+|.++++++..  ...+|++||+|+.+++.+.+++.   .. .+++++++|+.++...  ...+||+
T Consensus       536 ~~~g~rVLDlf~gtG~~sl~aa~~--Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~--~~~~fDl  611 (702)
T PRK11783        536 MAKGKDFLNLFAYTGTASVHAALG--GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKE--AREQFDL  611 (702)
T ss_pred             hcCCCeEEEcCCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHH--cCCCcCE
Confidence            345789999999999999999975  45589999999877654444433   22 3799999999875431  2468999


Q ss_pred             EEEcCCC
Q 024665          217 IFSDVAQ  223 (264)
Q Consensus       217 V~~d~p~  223 (264)
                      |++|||.
T Consensus       612 IilDPP~  618 (702)
T PRK11783        612 IFIDPPT  618 (702)
T ss_pred             EEECCCC
Confidence            9999993

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.85  E-value=7.5e-09  Score=96.49  Aligned_cols=77  Identities=21%  Similarity=0.111  Sum_probs=60.4

Q ss_pred             CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHH---HHHHHhhcC-CCeEEEEcCCCCchhhccc-CCCccEEE
Q 024665          144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGR---DLVNMAKKR-TNVIPIIEDARHPAKYRML-VGMVDVIF  218 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~---~l~~~a~~~-~nV~~i~~D~~~~~~~~~~-~~~fD~V~  218 (264)
                      |.+|||++|=||.+|+++|.-  .+.+|+.||+|..+++   ++.+.|... ..+.++++|+.+...+..- ..+||+||
T Consensus       218 GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi  295 (393)
T COG1092         218 GKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII  295 (393)
T ss_pred             CCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence            999999999999999999964  5669999999987754   444444432 2689999999987654222 23899999


Q ss_pred             EcCC
Q 024665          219 SDVA  222 (264)
Q Consensus       219 ~d~p  222 (264)
                      +|||
T Consensus       296 lDPP  299 (393)
T COG1092         296 LDPP  299 (393)
T ss_pred             ECCc
Confidence            9999

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=98.85  E-value=5.8e-09  Score=88.88  Aligned_cols=91  Identities=18%  Similarity=0.197  Sum_probs=70.0

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      .+.+-.+|.|||||+|..|..|+++. |...|+++|.|+.|+++.   +...+|++|.++|+.+..+    ...+|+|++
T Consensus        27 p~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~A---a~rlp~~~f~~aDl~~w~p----~~~~dllfa   98 (257)
T COG4106          27 PLERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKA---AQRLPDATFEEADLRTWKP----EQPTDLLFA   98 (257)
T ss_pred             CccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHH---HHhCCCCceecccHhhcCC----CCccchhhh
Confidence            47777899999999999999999997 688999999999885332   2334599999999998753    468999999


Q ss_pred             cCC---Cch--HHHHHHHHHhCCC
Q 024665          220 DVA---QPD--QVCFLCLILFQPI  238 (264)
Q Consensus       220 d~p---~~~--~~~~~~~~~l~~~  238 (264)
                      |..   -|+  ......+..+.|+
T Consensus        99 NAvlqWlpdH~~ll~rL~~~L~Pg  122 (257)
T COG4106          99 NAVLQWLPDHPELLPRLVSQLAPG  122 (257)
T ss_pred             hhhhhhccccHHHHHHHHHhhCCC
Confidence            987   233  3334445555665

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.84  E-value=3.2e-08  Score=83.16  Aligned_cols=97  Identities=21%  Similarity=0.078  Sum_probs=68.9

Q ss_pred             chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHh---hcCCCeEEEEcCC
Q 024665          125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA---KKRTNVIPIIEDA  201 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a---~~~~nV~~i~~D~  201 (264)
                      ..+.=..+.+.|... --++.+|||+.||||.+++.++.+  .+.+|+.||.+.++...+.++.   ....+++++..|+
T Consensus        26 ~drVREalFNil~~~-~i~g~~~LDlFAGSGaLGlEAlSR--GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da  102 (187)
T COG0742          26 TDRVREALFNILAPD-EIEGARVLDLFAGSGALGLEALSR--GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDA  102 (187)
T ss_pred             chHHHHHHHHhcccc-ccCCCEEEEecCCccHhHHHHHhC--CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecH
Confidence            344445555555511 257899999999999999999988  5679999999987754444433   3335899999999


Q ss_pred             CCchhhcccCCCccEEEEcCCCc
Q 024665          202 RHPAKYRMLVGMVDVIFSDVAQP  224 (264)
Q Consensus       202 ~~~~~~~~~~~~fD~V~~d~p~~  224 (264)
                      ....+.....++||+||+|||..
T Consensus       103 ~~~L~~~~~~~~FDlVflDPPy~  125 (187)
T COG0742         103 LRALKQLGTREPFDLVFLDPPYA  125 (187)
T ss_pred             HHHHHhcCCCCcccEEEeCCCCc
Confidence            85433211122499999999954

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.83  E-value=1.9e-08  Score=96.45  Aligned_cols=78  Identities=27%  Similarity=0.319  Sum_probs=60.7

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      ..++.+|||+|||+|.++..+++..   .+|+++|+++.+++...+.+....|+++++.|+.+... ....++||+|+++
T Consensus        35 ~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~-~~~~~~fD~I~~~  110 (475)
T PLN02336         35 PYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDL-NISDGSVDLIFSN  110 (475)
T ss_pred             ccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHhccCCceEEEEeccccccc-CCCCCCEEEEehh
Confidence            5577899999999999999999874   38999999999876655544444689999999974321 1234689999987


Q ss_pred             CC
Q 024665          221 VA  222 (264)
Q Consensus       221 ~p  222 (264)
                      .+
T Consensus       111 ~~  112 (475)
T PLN02336        111 WL  112 (475)
T ss_pred             hh
Confidence            65

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.83  E-value=4.5e-08  Score=90.01  Aligned_cols=92  Identities=14%  Similarity=0.045  Sum_probs=67.2

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcC
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDV  221 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~  221 (264)
                      .++.+|||+|||+|.++..+++.+ +..+|+++|+|+.+++.+.+... ..+++++++|+.+.+   ...+.||+|++..
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~-~~~i~~i~gD~e~lp---~~~~sFDvVIs~~  186 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP-LKECKIIEGDAEDLP---FPTDYADRYVSAG  186 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhh-ccCCeEEeccHHhCC---CCCCceeEEEEcC
Confidence            578899999999999999999876 34689999999988655544332 347899999998754   2346899999864


Q ss_pred             C-----CchHHHHHHHHHhCCC
Q 024665          222 A-----QPDQVCFLCLILFQPI  238 (264)
Q Consensus       222 p-----~~~~~~~~~~~~l~~~  238 (264)
                      .     .+........+.++|+
T Consensus       187 ~L~~~~d~~~~L~e~~rvLkPG  208 (340)
T PLN02490        187 SIEYWPDPQRGIKEAYRVLKIG  208 (340)
T ss_pred             hhhhCCCHHHHHHHHHHhcCCC
Confidence            3     3334444455555555

>PRK06922 hypothetical protein; Provisional

Probab=98.83  E-value=2e-08  Score=98.35  Aligned_cols=80  Identities=16%  Similarity=0.188  Sum_probs=62.0

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      +.++.+|||+|||+|.++..++... +..+|+++|+|+.|++.+.+.... ..++.++++|+.+++.+ ...++||+|++
T Consensus       416 ~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~-fedeSFDvVVs  493 (677)
T PRK06922        416 YIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSS-FEKESVDTIVY  493 (677)
T ss_pred             hcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccc-cCCCCEEEEEE
Confidence            4578899999999999999999875 678999999999887665554322 24788999999875421 23468999998


Q ss_pred             cCC
Q 024665          220 DVA  222 (264)
Q Consensus       220 d~p  222 (264)
                      +.+
T Consensus       494 n~v  496 (677)
T PRK06922        494 SSI  496 (677)
T ss_pred             chH
Confidence            754

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=98.82  E-value=1.4e-08  Score=92.76  Aligned_cols=83  Identities=24%  Similarity=0.251  Sum_probs=61.4

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCC---CCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhc------
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGP---NGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYR------  208 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~---~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~------  208 (264)
                      .++|+++|||+||++|..|..|.+.+..   .+.|+|.|++..-+..++...+..  +|+.+...|+...+...      
T Consensus       152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~  231 (375)
T KOG2198|consen  152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGND  231 (375)
T ss_pred             ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCch
Confidence            5999999999999999999999887753   258999999954333444444332  37888888887655321      


Q ss_pred             ccCCCccEEEEcCC
Q 024665          209 MLVGMVDVIFSDVA  222 (264)
Q Consensus       209 ~~~~~fD~V~~d~p  222 (264)
                      ....+||.|++|+|
T Consensus       232 ~~~~~fDrVLvDVP  245 (375)
T KOG2198|consen  232 KEQLKFDRVLVDVP  245 (375)
T ss_pred             hhhhhcceeEEecc
Confidence            12348999999999

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.82  E-value=5.3e-08  Score=91.01  Aligned_cols=92  Identities=16%  Similarity=-0.016  Sum_probs=66.4

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      ++.+|||++||+|..++.+|...+ ..+|+++|+++.+++.+.+++..+  .++++++.|+..+...   ...||+|++|
T Consensus        57 ~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~---~~~fD~V~lD  132 (382)
T PRK04338         57 PRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE---ERKFDVVDID  132 (382)
T ss_pred             CCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh---cCCCCEEEEC
Confidence            357899999999999999998764 458999999988865554444332  3678999999764321   3579999999


Q ss_pred             CC-CchHHHHHHHHHhCCC
Q 024665          221 VA-QPDQVCFLCLILFQPI  238 (264)
Q Consensus       221 ~p-~~~~~~~~~~~~l~~~  238 (264)
                      |+ .+......++..+.+.
T Consensus       133 P~Gs~~~~l~~al~~~~~~  151 (382)
T PRK04338        133 PFGSPAPFLDSAIRSVKRG  151 (382)
T ss_pred             CCCCcHHHHHHHHHHhcCC
Confidence            98 3334444445555555

>PLN02476 O-methyltransferase

Probab=98.81  E-value=3.5e-08  Score=88.22  Aligned_cols=98  Identities=19%  Similarity=0.104  Sum_probs=71.7

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHH---HHHHHHHhhcCCCeEEEEcCCCCchhhc---ccCCCc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRS---GRDLVNMAKKRTNVIPIIEDARHPAKYR---MLVGMV  214 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~---~~~l~~~a~~~~nV~~i~~D~~~~~~~~---~~~~~f  214 (264)
                      +.+..+|||+||++|+.++.+|..+.+.++|+++|.+++.   ++++++.+...++|+++++|+.+..+.-   ...++|
T Consensus       116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F  195 (278)
T PLN02476        116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY  195 (278)
T ss_pred             hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence            5567899999999999999999988888999999999765   3444455555568999999998854320   013589


Q ss_pred             cEEEEcCCC--chHHHHHHHHHhCCC
Q 024665          215 DVIFSDVAQ--PDQVCFLCLILFQPI  238 (264)
Q Consensus       215 D~V~~d~p~--~~~~~~~~~~~l~~~  238 (264)
                      |+||.|.+.  ........+..++++
T Consensus       196 D~VFIDa~K~~Y~~y~e~~l~lL~~G  221 (278)
T PLN02476        196 DFAFVDADKRMYQDYFELLLQLVRVG  221 (278)
T ss_pred             CEEEECCCHHHHHHHHHHHHHhcCCC
Confidence            999999883  233334444555555

>PRK04457 spermidine synthase; Provisional

Probab=98.81  E-value=7e-08  Score=85.83  Aligned_cols=78  Identities=18%  Similarity=0.118  Sum_probs=61.1

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcccCCCccEEE
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVDVIF  218 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~~~~fD~V~  218 (264)
                      .+..+|||||||+|+++..++... |..+|++||+++.+++.+.+....   .++++++++|+.+...  ...++||+|+
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~--~~~~~yD~I~  141 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIA--VHRHSTDVIL  141 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHH--hCCCCCCEEE
Confidence            355789999999999999999886 678999999999887555444322   2589999999987643  2346899999


Q ss_pred             EcCC
Q 024665          219 SDVA  222 (264)
Q Consensus       219 ~d~p  222 (264)
                      +|.-
T Consensus       142 ~D~~  145 (262)
T PRK04457        142 VDGF  145 (262)
T ss_pred             EeCC
Confidence            9864

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.80  E-value=1.1e-07  Score=82.21  Aligned_cols=95  Identities=20%  Similarity=0.220  Sum_probs=68.3

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcccCCCccEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      +.++.+|||+|||+|.++..++....+..+|+++|+++.+++.+.+....   ..++.+++.|+.+..   ...+.||+|
T Consensus        49 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~I  125 (239)
T PRK00216         49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP---FPDNSFDAV  125 (239)
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC---CCCCCccEE
Confidence            66789999999999999999999864357999999999887665554433   247999999998754   234689999


Q ss_pred             EEcCC-----CchHHHHHHHHHhCCC
Q 024665          218 FSDVA-----QPDQVCFLCLILFQPI  238 (264)
Q Consensus       218 ~~d~p-----~~~~~~~~~~~~l~~~  238 (264)
                      ++...     .+..........+.+.
T Consensus       126 ~~~~~l~~~~~~~~~l~~~~~~L~~g  151 (239)
T PRK00216        126 TIAFGLRNVPDIDKALREMYRVLKPG  151 (239)
T ss_pred             EEecccccCCCHHHHHHHHHHhccCC
Confidence            87533     3333333444444444

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=98.80  E-value=4e-08  Score=84.65  Aligned_cols=71  Identities=25%  Similarity=0.250  Sum_probs=56.6

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCCCchhhcccCCCccEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      +.++.+|||+|||+|.++..++..   ..+|+++|+|+.++..+.+.....   .++++++.|+.+.+      ++||+|
T Consensus        53 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~fD~i  123 (219)
T TIGR02021        53 PLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC------GEFDIV  123 (219)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC------CCcCEE
Confidence            457889999999999999999875   348999999998876655554332   37999999987643      689999


Q ss_pred             EEc
Q 024665          218 FSD  220 (264)
Q Consensus       218 ~~d  220 (264)
                      ++.
T Consensus       124 i~~  126 (219)
T TIGR02021       124 VCM  126 (219)
T ss_pred             EEh
Confidence            863

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.80  E-value=1.8e-08  Score=93.29  Aligned_cols=76  Identities=18%  Similarity=0.059  Sum_probs=58.5

Q ss_pred             CEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhc-c---c---C----
Q 024665          145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYR-M---L---V----  211 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~-~---~---~----  211 (264)
                      .+|||++||+|.+++.+|+.+.   +|++||+++++++.+.+++..+  .|++++++|+.+..... .   +   .    
T Consensus       199 ~~vlDl~~G~G~~sl~la~~~~---~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~  275 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQNFR---RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDL  275 (353)
T ss_pred             CcEEEEeccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccc
Confidence            4799999999999999998853   8999999998877666655444  38999999997754310 0   0   1    


Q ss_pred             --CCccEEEEcCCC
Q 024665          212 --GMVDVIFSDVAQ  223 (264)
Q Consensus       212 --~~fD~V~~d~p~  223 (264)
                        ..||+|++|||.
T Consensus       276 ~~~~~d~v~lDPPR  289 (353)
T TIGR02143       276 KSYNCSTIFVDPPR  289 (353)
T ss_pred             ccCCCCEEEECCCC
Confidence              138999999993

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=98.78  E-value=5.1e-08  Score=86.98  Aligned_cols=90  Identities=11%  Similarity=0.072  Sum_probs=63.1

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCC--CEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPN--GVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIF  218 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~--g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~  218 (264)
                      ..+..+|||+|||+|.++..+++.+...  ..|+++|+|+.+++.+.+   ..+++.++++|+.+++   ...++||+|+
T Consensus        83 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~---~~~~~~~~~~d~~~lp---~~~~sfD~I~  156 (272)
T PRK11088         83 DEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAK---RYPQVTFCVASSHRLP---FADQSLDAII  156 (272)
T ss_pred             CCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHH---hCCCCeEEEeecccCC---CcCCceeEEE
Confidence            3456789999999999999999876432  379999999977544322   2358999999998754   2356899999


Q ss_pred             EcCCCchHHHHHHHHHhCCC
Q 024665          219 SDVAQPDQVCFLCLILFQPI  238 (264)
Q Consensus       219 ~d~p~~~~~~~~~~~~l~~~  238 (264)
                      +.... . ......+.++|+
T Consensus       157 ~~~~~-~-~~~e~~rvLkpg  174 (272)
T PRK11088        157 RIYAP-C-KAEELARVVKPG  174 (272)
T ss_pred             EecCC-C-CHHHHHhhccCC
Confidence            75542 1 122334455554

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=98.78  E-value=7.2e-08  Score=88.25  Aligned_cols=92  Identities=15%  Similarity=0.075  Sum_probs=64.8

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh---cCCCeEEEEcCCCCchhhcccCCCccEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK---KRTNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~---~~~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      ..++.+|||||||+|.++..++.. + ...|+++|.|+.++.+....+.   ...+|+++..|+.+.+.    .+.||+|
T Consensus       120 ~l~g~~VLDIGCG~G~~~~~la~~-g-~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~----~~~FD~V  193 (322)
T PRK15068        120 PLKGRTVLDVGCGNGYHMWRMLGA-G-AKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA----LKAFDTV  193 (322)
T ss_pred             CCCCCEEEEeccCCcHHHHHHHHc-C-CCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC----cCCcCEE
Confidence            456789999999999999999987 3 3479999999877544322222   13489999999987652    4689999


Q ss_pred             EEcCC-----CchHHHHHHHHHhCCC
Q 024665          218 FSDVA-----QPDQVCFLCLILFQPI  238 (264)
Q Consensus       218 ~~d~p-----~~~~~~~~~~~~l~~~  238 (264)
                      ++.-.     .|........+.++|+
T Consensus       194 ~s~~vl~H~~dp~~~L~~l~~~LkpG  219 (322)
T PRK15068        194 FSMGVLYHRRSPLDHLKQLKDQLVPG  219 (322)
T ss_pred             EECChhhccCCHHHHHHHHHHhcCCC
Confidence            98532     3444444455555554

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=98.78  E-value=1.6e-08  Score=88.46  Aligned_cols=86  Identities=15%  Similarity=0.172  Sum_probs=63.0

Q ss_pred             CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC----C----eEEEEcCCCCchhhcccCCCcc
Q 024665          144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT----N----VIPIIEDARHPAKYRMLVGMVD  215 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~----n----V~~i~~D~~~~~~~~~~~~~fD  215 (264)
                      |.+|||+|||.|.+|.+||+.   ...|+|||.++.+++.+.+.++..+    +    +++.+.|+....      ++||
T Consensus        90 g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~------~~fD  160 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT------GKFD  160 (282)
T ss_pred             CceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc------cccc
Confidence            588999999999999999988   3589999999988777666644433    2    556666766543      5699


Q ss_pred             EEEEcCC-----CchHHHHHHHHHhCCC
Q 024665          216 VIFSDVA-----QPDQVCFLCLILFQPI  238 (264)
Q Consensus       216 ~V~~d~p-----~~~~~~~~~~~~l~~~  238 (264)
                      +|+|-..     .|..........++|.
T Consensus       161 aVvcsevleHV~dp~~~l~~l~~~lkP~  188 (282)
T KOG1270|consen  161 AVVCSEVLEHVKDPQEFLNCLSALLKPN  188 (282)
T ss_pred             eeeeHHHHHHHhCHHHHHHHHHHHhCCC
Confidence            9998543     4555555555566666

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=98.78  E-value=9.4e-09  Score=85.72  Aligned_cols=89  Identities=33%  Similarity=0.437  Sum_probs=65.1

Q ss_pred             chHHHHHHHhccccc-CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEc-CCC
Q 024665          125 RSKLAAAVLGGVDNI-WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIE-DAR  202 (264)
Q Consensus       125 ~s~l~~~il~~l~~~-~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~-D~~  202 (264)
                      ++.-+-+++..=+.. .++|+++|||+||++|+|+..+.+++.|.+.|.+||+.+-.        . -.-+.++++ |++
T Consensus        50 R~RsAFKLiEindKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~--------p-~~Ga~~i~~~dvt  120 (232)
T KOG4589|consen   50 RSRSAFKLIEINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE--------P-PEGATIIQGNDVT  120 (232)
T ss_pred             hhhhhhhheeehhhccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc--------C-CCCcccccccccC
Confidence            444444444332333 47899999999999999999999999999999999998611        1 124566666 898


Q ss_pred             Cchhhcc-----cCCCccEEEEcCC
Q 024665          203 HPAKYRM-----LVGMVDVIFSDVA  222 (264)
Q Consensus       203 ~~~~~~~-----~~~~fD~V~~d~p  222 (264)
                      ++..+..     ..-.+|+|++|+.
T Consensus       121 dp~~~~ki~e~lp~r~VdvVlSDMa  145 (232)
T KOG4589|consen  121 DPETYRKIFEALPNRPVDVVLSDMA  145 (232)
T ss_pred             CHHHHHHHHHhCCCCcccEEEeccC
Confidence            8764422     2237999999998

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=98.77  E-value=3.1e-08  Score=85.49  Aligned_cols=74  Identities=18%  Similarity=0.177  Sum_probs=56.4

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc--------------CCCeEEEEcCCCCchh
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--------------RTNVIPIIEDARHPAK  206 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~--------------~~nV~~i~~D~~~~~~  206 (264)
                      +.++.+|||+|||.|..++.||++   .-.|+|||+|+.+++.+.+.+..              ..+|+++++|+.++..
T Consensus        32 ~~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~  108 (213)
T TIGR03840        32 LPAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA  108 (213)
T ss_pred             CCCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCc
Confidence            467789999999999999999986   34899999999887765443321              2368999999988653


Q ss_pred             hcccCCCccEEEE
Q 024665          207 YRMLVGMVDVIFS  219 (264)
Q Consensus       207 ~~~~~~~fD~V~~  219 (264)
                        ...+.||.|+-
T Consensus       109 --~~~~~fD~i~D  119 (213)
T TIGR03840       109 --ADLGPVDAVYD  119 (213)
T ss_pred             --ccCCCcCEEEe
Confidence              12357888874

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=98.76  E-value=1.3e-07  Score=80.25  Aligned_cols=75  Identities=20%  Similarity=0.194  Sum_probs=56.8

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC-CCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~-~nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      +-+..++||||||.|.-++.||++   .-.|+|+|+|+.+++.+.+.+... .+|++.+.|+.+..    +.+.||+|++
T Consensus        28 ~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~----~~~~yD~I~s  100 (192)
T PF03848_consen   28 LLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFD----FPEEYDFIVS  100 (192)
T ss_dssp             TS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-----TTTEEEEEE
T ss_pred             hcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcc----ccCCcCEEEE
Confidence            334569999999999999999987   458999999998887777776544 37999999987754    3468999998


Q ss_pred             cCC
Q 024665          220 DVA  222 (264)
Q Consensus       220 d~p  222 (264)
                      .+.
T Consensus       101 t~v  103 (192)
T PF03848_consen  101 TVV  103 (192)
T ss_dssp             ESS
T ss_pred             EEE
Confidence            654

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.76  E-value=7.9e-08  Score=78.90  Aligned_cols=95  Identities=22%  Similarity=0.146  Sum_probs=76.0

Q ss_pred             CCcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCC
Q 024665          122 NPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDA  201 (264)
Q Consensus       122 ~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~  201 (264)
                      .|.++-+|.+++..++   +..+.-|||+|.|+|.+|..+..+.-+...++++|.|++....+   +...+.+++|++|+
T Consensus        30 ~PsSs~lA~~M~s~I~---pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L---~~~~p~~~ii~gda  103 (194)
T COG3963          30 LPSSSILARKMASVID---PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHL---NQLYPGVNIINGDA  103 (194)
T ss_pred             cCCcHHHHHHHHhccC---cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHH---HHhCCCccccccch
Confidence            4667888888887766   88888999999999999999988876777899999999875443   33456778999999


Q ss_pred             CCchhh--cccCCCccEEEEcCC
Q 024665          202 RHPAKY--RMLVGMVDVIFSDVA  222 (264)
Q Consensus       202 ~~~~~~--~~~~~~fD~V~~d~p  222 (264)
                      .+...+  ......||+|++-.|
T Consensus       104 ~~l~~~l~e~~gq~~D~viS~lP  126 (194)
T COG3963         104 FDLRTTLGEHKGQFFDSVISGLP  126 (194)
T ss_pred             hhHHHHHhhcCCCeeeeEEeccc
Confidence            887632  233457999999988

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.76  E-value=1.6e-08  Score=83.47  Aligned_cols=75  Identities=17%  Similarity=0.055  Sum_probs=48.8

Q ss_pred             CEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcccCCCccEEEEcC
Q 024665          145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVDVIFSDV  221 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~  221 (264)
                      +.|||++||.|.-++++|....   +|+|||+++..++-+..++..   ..||+++++|+.+..........+|+||++|
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~~---~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP   77 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTFD---RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP   77 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred             CEEEEeccCcCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence            4799999999999999999854   899999997665444444443   3489999999988654211112289999999


Q ss_pred             C
Q 024665          222 A  222 (264)
Q Consensus       222 p  222 (264)
                      |
T Consensus        78 P   78 (163)
T PF09445_consen   78 P   78 (163)
T ss_dssp             -
T ss_pred             C
Confidence            9

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=98.76  E-value=3.8e-08  Score=85.22  Aligned_cols=74  Identities=15%  Similarity=0.118  Sum_probs=56.9

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc--------------CCCeEEEEcCCCCchh
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--------------RTNVIPIIEDARHPAK  206 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~--------------~~nV~~i~~D~~~~~~  206 (264)
                      +.++.+|||+|||.|..++.||++   ...|+|||+|+.+++.+.+.+..              ..+|+++++|+.++..
T Consensus        35 ~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~  111 (218)
T PRK13255         35 LPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA  111 (218)
T ss_pred             CCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCc
Confidence            567889999999999999999986   45899999999887665433321              2378999999988753


Q ss_pred             hcccCCCccEEEE
Q 024665          207 YRMLVGMVDVIFS  219 (264)
Q Consensus       207 ~~~~~~~fD~V~~  219 (264)
                      .  ....||.|+-
T Consensus       112 ~--~~~~fd~v~D  122 (218)
T PRK13255        112 A--DLADVDAVYD  122 (218)
T ss_pred             c--cCCCeeEEEe
Confidence            2  2357899983

>PRK06202 hypothetical protein; Provisional

Probab=98.75  E-value=6.8e-08  Score=84.00  Aligned_cols=78  Identities=15%  Similarity=0.041  Sum_probs=57.0

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHh---CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIV---GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~---~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      ..+..+|||+|||+|.++..|++.+   ++..+|+++|+|+.|++.+.+.. ...++++++.|+.++..   ..++||+|
T Consensus        58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~-~~~~~~~~~~~~~~l~~---~~~~fD~V  133 (232)
T PRK06202         58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANP-RRPGVTFRQAVSDELVA---EGERFDVV  133 (232)
T ss_pred             CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcc-ccCCCeEEEEecccccc---cCCCccEE
Confidence            3567899999999999999998764   33458999999998865543332 23467777776655431   34689999


Q ss_pred             EEcCC
Q 024665          218 FSDVA  222 (264)
Q Consensus       218 ~~d~p  222 (264)
                      +++..
T Consensus       134 ~~~~~  138 (232)
T PRK06202        134 TSNHF  138 (232)
T ss_pred             EECCe
Confidence            99865

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=98.75  E-value=1.1e-07  Score=89.07  Aligned_cols=74  Identities=24%  Similarity=0.212  Sum_probs=58.5

Q ss_pred             cCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEE
Q 024665          139 IWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIF  218 (264)
Q Consensus       139 ~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~  218 (264)
                      +.++|+++|||+|||+|.++..+++..  ..+|+++|+|+.+++...+... ..++++.+.|+.+.      .++||+|+
T Consensus       163 l~l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~-~l~v~~~~~D~~~l------~~~fD~Iv  233 (383)
T PRK11705        163 LQLKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA-GLPVEIRLQDYRDL------NGQFDRIV  233 (383)
T ss_pred             hCCCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc-cCeEEEEECchhhc------CCCCCEEE
Confidence            358999999999999999999999874  4589999999988765555442 23688888887653      36899998


Q ss_pred             EcC
Q 024665          219 SDV  221 (264)
Q Consensus       219 ~d~  221 (264)
                      +..
T Consensus       234 s~~  236 (383)
T PRK11705        234 SVG  236 (383)
T ss_pred             EeC
Confidence            753

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.75  E-value=1.9e-07  Score=79.82  Aligned_cols=95  Identities=16%  Similarity=0.125  Sum_probs=68.6

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      ..++.+|||+|||+|.++..++.......+++++|+++.+++...+......++++++.|+.+.+   ...++||+|++.
T Consensus        37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~i~~~  113 (223)
T TIGR01934        37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALP---FEDNSFDAVTIA  113 (223)
T ss_pred             cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCC---CCCCcEEEEEEe
Confidence            55789999999999999999998864337899999998776554443332347999999998754   234689999875


Q ss_pred             C-----CCchHHHHHHHHHhCCC
Q 024665          221 V-----AQPDQVCFLCLILFQPI  238 (264)
Q Consensus       221 ~-----p~~~~~~~~~~~~l~~~  238 (264)
                      .     +.+..........++|+
T Consensus       114 ~~~~~~~~~~~~l~~~~~~L~~g  136 (223)
T TIGR01934       114 FGLRNVTDIQKALREMYRVLKPG  136 (223)
T ss_pred             eeeCCcccHHHHHHHHHHHcCCC
Confidence            3     34444444555555555

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK00811 spermidine synthase; Provisional

Probab=98.74  E-value=3.4e-07  Score=82.35  Aligned_cols=80  Identities=23%  Similarity=0.199  Sum_probs=60.9

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh-------cCCCeEEEEcCCCCchhhcccCCCc
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK-------KRTNVIPIIEDARHPAKYRMLVGMV  214 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~-------~~~nV~~i~~D~~~~~~~~~~~~~f  214 (264)
                      +...+||++|||.|.++..+++. .+..+|++||+++.+++.+.+...       ..++++++++|+.+....  ..++|
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~-~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~--~~~~y  151 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKH-PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE--TENSF  151 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcC-CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh--CCCcc
Confidence            34578999999999999999875 234589999999988655544332       235899999999875532  34689


Q ss_pred             cEEEEcCCCc
Q 024665          215 DVIFSDVAQP  224 (264)
Q Consensus       215 D~V~~d~p~~  224 (264)
                      |+|++|.+.|
T Consensus       152 DvIi~D~~dp  161 (283)
T PRK00811        152 DVIIVDSTDP  161 (283)
T ss_pred             cEEEECCCCC
Confidence            9999998754

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.74  E-value=2.8e-09  Score=89.22  Aligned_cols=85  Identities=33%  Similarity=0.359  Sum_probs=56.7

Q ss_pred             HHHHHhcccccC-CCCC--CEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCch
Q 024665          129 AAAVLGGVDNIW-IKPG--ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPA  205 (264)
Q Consensus       129 ~~~il~~l~~~~-l~~g--~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~  205 (264)
                      +.++...++++. ++++  .+||||||+||.|+..++++..+.++|+|||+.+.         ....++..+++|.++..
T Consensus         6 ~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~~~~~~~i~~d~~~~~   76 (181)
T PF01728_consen    6 AFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DPLQNVSFIQGDITNPE   76 (181)
T ss_dssp             HHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS-TTEEBTTGGGEEEE
T ss_pred             HHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc---------ccccceeeeecccchhh
Confidence            334444444555 5554  89999999999999999999766789999999963         11247888888886643


Q ss_pred             hh---cc-c---CCCccEEEEcCC
Q 024665          206 KY---RM-L---VGMVDVIFSDVA  222 (264)
Q Consensus       206 ~~---~~-~---~~~fD~V~~d~p  222 (264)
                      ..   .. +   ..+||+|++|+.
T Consensus        77 ~~~~i~~~~~~~~~~~dlv~~D~~  100 (181)
T PF01728_consen   77 NIKDIRKLLPESGEKFDLVLSDMA  100 (181)
T ss_dssp             HSHHGGGSHGTTTCSESEEEE---
T ss_pred             HHHhhhhhccccccCcceeccccc
Confidence            21   11 1   158999999995

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PLN03075 nicotianamine synthase; Provisional

Probab=98.74  E-value=1.5e-07  Score=84.79  Aligned_cols=95  Identities=9%  Similarity=0.016  Sum_probs=66.1

Q ss_pred             CCCCCEEEEEcccCChH-HHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc----CCCeEEEEcCCCCchhhcccCCCcc
Q 024665          141 IKPGARVLYLGAASGTT-VSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK----RTNVIPIIEDARHPAKYRMLVGMVD  215 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~-s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~----~~nV~~i~~D~~~~~~~~~~~~~fD  215 (264)
                      ..+.++|+|+|||+|.+ ++.++....+.++++++|+++++++.+.+.+..    ..+|+|+++|+.+...   ....||
T Consensus       121 ~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~---~l~~FD  197 (296)
T PLN03075        121 NGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE---SLKEYD  197 (296)
T ss_pred             cCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc---ccCCcC
Confidence            44778999999998855 444454556889999999999886655555532    3479999999988542   236899


Q ss_pred             EEEEcCC------CchHHHHHHHHHhCCC
Q 024665          216 VIFSDVA------QPDQVCFLCLILFQPI  238 (264)
Q Consensus       216 ~V~~d~p------~~~~~~~~~~~~l~~~  238 (264)
                      +||+++.      .+..........++|+
T Consensus       198 lVF~~ALi~~dk~~k~~vL~~l~~~LkPG  226 (296)
T PLN03075        198 VVFLAALVGMDKEEKVKVIEHLGKHMAPG  226 (296)
T ss_pred             EEEEecccccccccHHHHHHHHHHhcCCC
Confidence            9999852      3334444444555555

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.73  E-value=5.7e-08  Score=82.74  Aligned_cols=110  Identities=19%  Similarity=0.170  Sum_probs=70.5

Q ss_pred             CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc--CCCeEEEEcCCCCchhhcccCCCccEEEEcC
Q 024665          144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--RTNVIPIIEDARHPAKYRMLVGMVDVIFSDV  221 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~--~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~  221 (264)
                      ...+||+|||.|.+++.+|... |...++|||++...+..+.+.+..  ..|+.+++.|+......-...+++|.|+++.
T Consensus        18 ~~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F   96 (195)
T PF02390_consen   18 NPLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF   96 (195)
T ss_dssp             CEEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES
T ss_pred             CCeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeC
Confidence            3389999999999999999985 788999999996655555554433  3499999999998654323347999999999


Q ss_pred             CCchHHHHHHHHHhCCCcHHHHHHHHHHhh-cchhh
Q 024665          222 AQPDQVCFLCLILFQPIVINNLQSVNNETK-GGIFE  256 (264)
Q Consensus       222 p~~~~~~~~~~~~l~~~~~~~l~~~~~~Lk-~g~f~  256 (264)
                      |.||.......  ........+..+.+.|+ +|.+.
T Consensus        97 PDPWpK~rH~k--rRl~~~~fl~~~~~~L~~gG~l~  130 (195)
T PF02390_consen   97 PDPWPKKRHHK--RRLVNPEFLELLARVLKPGGELY  130 (195)
T ss_dssp             -----SGGGGG--GSTTSHHHHHHHHHHEEEEEEEE
T ss_pred             CCCCcccchhh--hhcCCchHHHHHHHHcCCCCEEE
Confidence            98875432211  11224445555566666 55443

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.72  E-value=2.3e-08  Score=85.76  Aligned_cols=81  Identities=20%  Similarity=0.231  Sum_probs=61.4

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHH---HHHHHHhhcCCCeEEEEcCCCCchhh-c--ccCCCcc
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSG---RDLVNMAKKRTNVIPIIEDARHPAKY-R--MLVGMVD  215 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~---~~l~~~a~~~~nV~~i~~D~~~~~~~-~--~~~~~fD  215 (264)
                      ..-.+||++||++|+.++.||+.+.+.++|+++|++++.+   +++++.+....+|+++++|+.+..+. .  ...++||
T Consensus        44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD  123 (205)
T PF01596_consen   44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD  123 (205)
T ss_dssp             HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred             cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence            3446999999999999999999988889999999997664   34444444445899999999875432 0  1134799


Q ss_pred             EEEEcCC
Q 024665          216 VIFSDVA  222 (264)
Q Consensus       216 ~V~~d~p  222 (264)
                      +||.|..
T Consensus       124 ~VFiDa~  130 (205)
T PF01596_consen  124 FVFIDAD  130 (205)
T ss_dssp             EEEEEST
T ss_pred             EEEEccc
Confidence            9999987

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.71  E-value=9e-08  Score=87.26  Aligned_cols=85  Identities=16%  Similarity=0.030  Sum_probs=60.0

Q ss_pred             HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC-------CCeEEEEc
Q 024665          127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-------TNVIPIIE  199 (264)
Q Consensus       127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~-------~nV~~i~~  199 (264)
                      .+...++..+......++.+|||+|||+|.+++.+++.   ..+|+++|+|+.|++...+.+...       .++.+++.
T Consensus       128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~  204 (315)
T PLN02585        128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAN  204 (315)
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEc
Confidence            33444444443211235789999999999999999976   358999999999976665554432       36788888


Q ss_pred             CCCCchhhcccCCCccEEEEc
Q 024665          200 DARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       200 D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      |+.++      .++||+|++.
T Consensus       205 Dl~~l------~~~fD~Vv~~  219 (315)
T PLN02585        205 DLESL------SGKYDTVTCL  219 (315)
T ss_pred             chhhc------CCCcCEEEEc
Confidence            87543      3689999864

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.70  E-value=2.9e-08  Score=85.56  Aligned_cols=77  Identities=25%  Similarity=0.173  Sum_probs=62.0

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC--------CeEEEEcCCCCchhhcccCC
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT--------NVIPIIEDARHPAKYRMLVG  212 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~--------nV~~i~~D~~~~~~~~~~~~  212 (264)
                      ++.|.+|||.|.|-|++++..++.  .+-+|+.||.++..    ++.|+.++        +|++|.+|+.+..+. +.++
T Consensus       132 ~~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~V----LeLa~lNPwSr~l~~~~i~iilGD~~e~V~~-~~D~  204 (287)
T COG2521         132 VKRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNV----LELAKLNPWSRELFEIAIKIILGDAYEVVKD-FDDE  204 (287)
T ss_pred             cccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCe----EEeeccCCCCccccccccEEecccHHHHHhc-CCcc
Confidence            677999999999999999999987  45599999999855    44444443        689999999886542 3456


Q ss_pred             CccEEEEcCCCc
Q 024665          213 MVDVIFSDVAQP  224 (264)
Q Consensus       213 ~fD~V~~d~p~~  224 (264)
                      +||+|+.|||.-
T Consensus       205 sfDaIiHDPPRf  216 (287)
T COG2521         205 SFDAIIHDPPRF  216 (287)
T ss_pred             ccceEeeCCCcc
Confidence            899999999943

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.70  E-value=1.9e-07  Score=80.45  Aligned_cols=71  Identities=14%  Similarity=0.177  Sum_probs=54.4

Q ss_pred             CEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh---cCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK---KRTNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~---~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      ++|||+|||+|.++..+++.. +..+|+++|+|+.+++...+...   ...++++++.|+.+.+    ..++||+|++.
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~----~~~~fD~I~~~   74 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP----FPDTYDLVFGF   74 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC----CCCCCCEeehH
Confidence            379999999999999999886 45789999999877655444433   2347999999986543    23589999963

>TIGR00452 methyltransferase, putative

Probab=98.69  E-value=1.9e-07  Score=85.07  Aligned_cols=93  Identities=13%  Similarity=0.006  Sum_probs=65.5

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh---cCCCeEEEEcCCCCchhhcccCCCccE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK---KRTNVIPIIEDARHPAKYRMLVGMVDV  216 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~---~~~nV~~i~~D~~~~~~~~~~~~~fD~  216 (264)
                      .+.++.+|||+|||+|.++..++.. + ...|++||.|+.|+.+.....+   ...++.++..|+.+.+.    ...||+
T Consensus       118 ~~~~g~~VLDvGCG~G~~~~~~~~~-g-~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~----~~~FD~  191 (314)
T TIGR00452       118 SPLKGRTILDVGCGSGYHMWRMLGH-G-AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE----LYAFDT  191 (314)
T ss_pred             CCCCCCEEEEeccCCcHHHHHHHHc-C-CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC----CCCcCE
Confidence            3677899999999999999999876 2 3479999999987654322221   23478888888877642    258999


Q ss_pred             EEEcCC-----CchHHHHHHHHHhCCC
Q 024665          217 IFSDVA-----QPDQVCFLCLILFQPI  238 (264)
Q Consensus       217 V~~d~p-----~~~~~~~~~~~~l~~~  238 (264)
                      |++...     .|........+.++|+
T Consensus       192 V~s~gvL~H~~dp~~~L~el~r~LkpG  218 (314)
T TIGR00452       192 VFSMGVLYHRKSPLEHLKQLKHQLVIK  218 (314)
T ss_pred             EEEcchhhccCCHHHHHHHHHHhcCCC
Confidence            998643     4445555555556655

Known examples to date are restricted to the proteobacteria.

>PLN02672 methionine S-methyltransferase

Probab=98.68  E-value=6.1e-08  Score=100.15  Aligned_cols=76  Identities=14%  Similarity=0.011  Sum_probs=59.2

Q ss_pred             CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC------------------CCeEEEEcCCCCch
Q 024665          144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR------------------TNVIPIIEDARHPA  205 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~------------------~nV~~i~~D~~~~~  205 (264)
                      +.+|||+|||+|.+++.++... +..+|+|+|+|+.+++.+.+++..+                  .+|++++.|+.+..
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~  197 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC  197 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence            4689999999999999999886 4569999999998865554444321                  36999999997754


Q ss_pred             hhcccCCCccEEEEcCC
Q 024665          206 KYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       206 ~~~~~~~~fD~V~~d~p  222 (264)
                      .  ....+||+|++|||
T Consensus       198 ~--~~~~~fDlIVSNPP  212 (1082)
T PLN02672        198 R--DNNIELDRIVGCIP  212 (1082)
T ss_pred             c--ccCCceEEEEECCC
Confidence            2  11136999999999

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.68  E-value=2.7e-07  Score=79.63  Aligned_cols=84  Identities=19%  Similarity=0.149  Sum_probs=59.6

Q ss_pred             HHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCCCchh
Q 024665          130 AAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAK  206 (264)
Q Consensus       130 ~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~~~~~  206 (264)
                      ..++..+......++.+|||+|||+|.++..+++.   ...|+++|+|+.+++.+.+.....   .++.+++.|+..   
T Consensus        50 ~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---  123 (230)
T PRK07580         50 DTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---  123 (230)
T ss_pred             HHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---
Confidence            33444444323567889999999999999999876   247999999998866555543322   378999999432   


Q ss_pred             hcccCCCccEEEEcCC
Q 024665          207 YRMLVGMVDVIFSDVA  222 (264)
Q Consensus       207 ~~~~~~~fD~V~~d~p  222 (264)
                         ..+.||+|++...
T Consensus       124 ---~~~~fD~v~~~~~  136 (230)
T PRK07580        124 ---LLGRFDTVVCLDV  136 (230)
T ss_pred             ---ccCCcCEEEEcch
Confidence               2368999987533

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.67  E-value=2.5e-07  Score=79.92  Aligned_cols=97  Identities=19%  Similarity=0.206  Sum_probs=73.5

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHH---HHHHhhcCCCeEEEE-cCCCCchhhcccCCCccE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRD---LVNMAKKRTNVIPII-EDARHPAKYRMLVGMVDV  216 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~---l~~~a~~~~nV~~i~-~D~~~~~~~~~~~~~fD~  216 (264)
                      +.+..+|||+|++.|+.++.||..+..++++|+||++++.++.   +.+.+.....|+.+. +|+.+.... ...++||+
T Consensus        57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~-~~~~~fDl  135 (219)
T COG4122          57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSR-LLDGSFDL  135 (219)
T ss_pred             hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHh-ccCCCccE
Confidence            5677899999999999999999999778999999999766444   334444444688888 598876542 34579999


Q ss_pred             EEEcCC--CchHHHHHHHHHhCCC
Q 024665          217 IFSDVA--QPDQVCFLCLILFQPI  238 (264)
Q Consensus       217 V~~d~p--~~~~~~~~~~~~l~~~  238 (264)
                      ||.|..  +-.+.....++.++|+
T Consensus       136 iFIDadK~~yp~~le~~~~lLr~G  159 (219)
T COG4122         136 VFIDADKADYPEYLERALPLLRPG  159 (219)
T ss_pred             EEEeCChhhCHHHHHHHHHHhCCC
Confidence            999987  3335555666667766

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.65  E-value=1.8e-07  Score=83.15  Aligned_cols=92  Identities=20%  Similarity=0.229  Sum_probs=74.2

Q ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCch
Q 024665          126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPA  205 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~  205 (264)
                      +.++..|+..++   +.+++.|||+|+|+|.+|..|++..   .+|+++|+++++.+.+.+......|++++++|+.+..
T Consensus        16 ~~~~~~Iv~~~~---~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~   89 (262)
T PF00398_consen   16 PNIADKIVDALD---LSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWD   89 (262)
T ss_dssp             HHHHHHHHHHHT---CGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSC
T ss_pred             HHHHHHHHHhcC---CCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhhcccceeeecchhccc
Confidence            456777776655   7799999999999999999999985   5999999999888777765555679999999999877


Q ss_pred             hhcccCCCccEEEEcCCC
Q 024665          206 KYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       206 ~~~~~~~~fD~V~~d~p~  223 (264)
                      .+.........|++|.|.
T Consensus        90 ~~~~~~~~~~~vv~NlPy  107 (262)
T PF00398_consen   90 LYDLLKNQPLLVVGNLPY  107 (262)
T ss_dssp             GGGHCSSSEEEEEEEETG
T ss_pred             cHHhhcCCceEEEEEecc
Confidence            653334577899999994

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PLN02366 spermidine synthase

Probab=98.65  E-value=4.3e-07  Score=82.60  Aligned_cols=81  Identities=17%  Similarity=0.141  Sum_probs=60.2

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh------cCCCeEEEEcCCCCchhhcccCCCcc
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK------KRTNVIPIIEDARHPAKYRMLVGMVD  215 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~------~~~nV~~i~~D~~~~~~~~~~~~~fD  215 (264)
                      .+..+||++|||.|.++..+++. .+..+|+.||+++.+++...+...      ..++++++++|+.+.... ...++||
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~-~~~~~yD  167 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKN-APEGTYD  167 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhh-ccCCCCC
Confidence            45679999999999999999876 334689999999877654444321      234899999999775431 1135899


Q ss_pred             EEEEcCCCc
Q 024665          216 VIFSDVAQP  224 (264)
Q Consensus       216 ~V~~d~p~~  224 (264)
                      +|++|.+.|
T Consensus       168 vIi~D~~dp  176 (308)
T PLN02366        168 AIIVDSSDP  176 (308)
T ss_pred             EEEEcCCCC
Confidence            999998754

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.63  E-value=4.7e-07  Score=78.89  Aligned_cols=57  Identities=16%  Similarity=0.151  Sum_probs=42.7

Q ss_pred             chHHHHHHHhcccccCC-CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHH
Q 024665          125 RSKLAAAVLGGVDNIWI-KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRD  183 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~l-~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~  183 (264)
                      .|+-+..+...++.+.+ .++.+|||+|||||.+|..+++.  ...+|||||+++.++..
T Consensus        56 vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~--ga~~v~avD~~~~~l~~  113 (228)
T TIGR00478        56 VSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK--GAKEVYGVDVGYNQLAE  113 (228)
T ss_pred             hhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHH
Confidence            44444555555554444 47889999999999999999987  46689999999866433

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.62  E-value=2.9e-07  Score=81.06  Aligned_cols=85  Identities=18%  Similarity=0.187  Sum_probs=68.5

Q ss_pred             HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC---CeEEEEcCCCC
Q 024665          127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT---NVIPIIEDARH  203 (264)
Q Consensus       127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~---nV~~i~~D~~~  203 (264)
                      -.+..|+...   .++|.+.|||+|.|||++|..|.+.   ..+|+|+|++++|+.++.+.-+-.+   ..+++++|+..
T Consensus        45 ~v~~~I~~ka---~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK  118 (315)
T KOG0820|consen   45 LVIDQIVEKA---DLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLK  118 (315)
T ss_pred             HHHHHHHhcc---CCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEeccccc
Confidence            4555555443   4999999999999999999999998   3489999999999877776654333   68999999987


Q ss_pred             chhhcccCCCccEEEEcCC
Q 024665          204 PAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       204 ~~~~~~~~~~fD~V~~d~p  222 (264)
                      .+     ...||.+++|.|
T Consensus       119 ~d-----~P~fd~cVsNlP  132 (315)
T KOG0820|consen  119 TD-----LPRFDGCVSNLP  132 (315)
T ss_pred             CC-----CcccceeeccCC
Confidence            54     257999999988

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.61  E-value=2.9e-07  Score=77.94  Aligned_cols=74  Identities=22%  Similarity=0.227  Sum_probs=54.8

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      ++++++|||+|||+|.++..+++..  ...++++|+++.+++.    +.. .++++++.|+.+.... ...++||+|+++
T Consensus        11 i~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~----a~~-~~~~~~~~d~~~~l~~-~~~~sfD~Vi~~   82 (194)
T TIGR02081        11 IPPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLA----CVA-RGVNVIQGDLDEGLEA-FPDKSFDYVILS   82 (194)
T ss_pred             cCCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHH----HHH-cCCeEEEEEhhhcccc-cCCCCcCEEEEh
Confidence            4578899999999999999998763  3478999999876433    322 3688999998762210 234689999997


Q ss_pred             CC
Q 024665          221 VA  222 (264)
Q Consensus       221 ~p  222 (264)
                      .+
T Consensus        83 ~~   84 (194)
T TIGR02081        83 QT   84 (194)
T ss_pred             hH
Confidence            65

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.61  E-value=2.8e-07  Score=85.87  Aligned_cols=91  Identities=16%  Similarity=0.079  Sum_probs=66.5

Q ss_pred             CEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665          145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      -+|||+.||+|..++.++.......+|+++|+++.+++.+.++...+  .++++++.|+......  ...+||+|++||+
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~--~~~~fDvIdlDPf  123 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRY--RNRKFHVIDIDPF  123 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHH--hCCCCCEEEeCCC
Confidence            48999999999999999987544568999999988865554444333  2799999999876532  2357999999997


Q ss_pred             -CchHHHHHHHHHhCC
Q 024665          223 -QPDQVCFLCLILFQP  237 (264)
Q Consensus       223 -~~~~~~~~~~~~l~~  237 (264)
                       .|......++..+..
T Consensus       124 Gs~~~fld~al~~~~~  139 (374)
T TIGR00308       124 GTPAPFVDSAIQASAE  139 (374)
T ss_pred             CCcHHHHHHHHHhccc
Confidence             334444445544443

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.60  E-value=6.8e-08  Score=77.59  Aligned_cols=95  Identities=18%  Similarity=0.156  Sum_probs=71.6

Q ss_pred             CcchHHHHHHHhcccccC-CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC-CCeEEEEcC
Q 024665          123 PFRSKLAAAVLGGVDNIW-IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIED  200 (264)
Q Consensus       123 p~~s~l~~~il~~l~~~~-l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~-~nV~~i~~D  200 (264)
                      |.++.+++.++..+.+.+ --+|.+++|||||.|.+++..+..  ..-.|+++|+++++++-...++... .++.+++.|
T Consensus        27 ~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~--~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcd  104 (185)
T KOG3420|consen   27 PTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMP--KNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCD  104 (185)
T ss_pred             CCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcC--CCceEEeeecCHHHHHHHhhchHHhhhhhheeeee
Confidence            446778887777776553 368999999999999999766644  4557999999998865443333322 288999999


Q ss_pred             CCCchhhcccCCCccEEEEcCC
Q 024665          201 ARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       201 ~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      +.++..   ....||.++.|+|
T Consensus       105 ildle~---~~g~fDtaviNpp  123 (185)
T KOG3420|consen  105 ILDLEL---KGGIFDTAVINPP  123 (185)
T ss_pred             ccchhc---cCCeEeeEEecCC
Confidence            998763   2368999999999

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.59  E-value=3.5e-07  Score=66.88  Aligned_cols=75  Identities=28%  Similarity=0.239  Sum_probs=56.4

Q ss_pred             EEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHh--hcCCCeEEEEcCCCCchhhcccCCCccEEEEcCCC
Q 024665          146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA--KKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       146 ~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a--~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~  223 (264)
                      +|||+|||+|.++..++.  .+..+++++|+++.+...+.+..  ....++++++.|+.+...  ....++|+|+++.+.
T Consensus         1 ~ildig~G~G~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~i~~~~~~   76 (107)
T cd02440           1 RVLDLGCGTGALALALAS--GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP--EADESFDVIISDPPL   76 (107)
T ss_pred             CeEEEcCCccHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc--ccCCceEEEEEccce
Confidence            489999999999999987  35679999999987754444222  123489999999988653  134689999999874


Q ss_pred             c
Q 024665          224 P  224 (264)
Q Consensus       224 ~  224 (264)
                      .
T Consensus        77 ~   77 (107)
T cd02440          77 H   77 (107)
T ss_pred             e
Confidence            3

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=98.59  E-value=9.1e-08  Score=90.62  Aligned_cols=106  Identities=17%  Similarity=0.110  Sum_probs=78.2

Q ss_pred             HHHHHHHhcccc-cCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC--CeEEEEcCCCC
Q 024665          127 KLAAAVLGGVDN-IWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT--NVIPIIEDARH  203 (264)
Q Consensus       127 ~l~~~il~~l~~-~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~--nV~~i~~D~~~  203 (264)
                      ..++.+...+.+ ..+.++..+||+|||||++++.+|+.+.   +|++||+++.+++++..+|+.+.  |.+||++-+++
T Consensus       366 ~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~---~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~  442 (534)
T KOG2187|consen  366 SAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVK---RVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED  442 (534)
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcccc---ceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence            344444444433 2588899999999999999999998765   89999999999888777776654  99999998877


Q ss_pred             chhhcccCC---Ccc-EEEEcCCC--chHHHHHHHHHhC
Q 024665          204 PAKYRMLVG---MVD-VIFSDVAQ--PDQVCFLCLILFQ  236 (264)
Q Consensus       204 ~~~~~~~~~---~fD-~V~~d~p~--~~~~~~~~~~~l~  236 (264)
                      +..- .+..   .=+ ++++|+|.  -++..+..+.++.
T Consensus       443 ~~~s-l~~~~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~  480 (534)
T KOG2187|consen  443 LFPS-LLTPCCDSETLVAIIDPPRKGLHMKVIKALRAYK  480 (534)
T ss_pred             ccch-hcccCCCCCceEEEECCCcccccHHHHHHHHhcc
Confidence            5431 1111   335 78899994  5667777777776

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.59  E-value=1.9e-07  Score=83.21  Aligned_cols=77  Identities=12%  Similarity=0.123  Sum_probs=55.2

Q ss_pred             CCCCCEEEEEcccCCh----HHHHHHHHhCC----CCEEEEEeCChHHHHHHHHHh------------------------
Q 024665          141 IKPGARVLYLGAASGT----TVSHVSDIVGP----NGVVYAVEFSHRSGRDLVNMA------------------------  188 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~----~s~~la~~~~~----~g~V~avD~s~~~~~~l~~~a------------------------  188 (264)
                      ..+..+|||+|||+|-    +++.+++....    ..+|+|+|+|+.|++.+.+..                        
T Consensus        97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~  176 (264)
T smart00138       97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDK  176 (264)
T ss_pred             CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence            3455799999999996    56666665432    468999999998865544321                        


Q ss_pred             -----hcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          189 -----KKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       189 -----~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                           ..+.+|++.+.|+.+.+.   ..++||+|+|.
T Consensus       177 ~~v~~~ir~~V~F~~~dl~~~~~---~~~~fD~I~cr  210 (264)
T smart00138      177 YRVKPELKERVRFAKHNLLAESP---PLGDFDLIFCR  210 (264)
T ss_pred             EEEChHHhCcCEEeeccCCCCCC---ccCCCCEEEec
Confidence                 012379999999988652   24689999984

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.59  E-value=2.4e-07  Score=83.24  Aligned_cols=79  Identities=24%  Similarity=0.090  Sum_probs=54.3

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC----CCeEEEEcCCCCchhhcccCCCccEE
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR----TNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~----~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      ..+.+|||+.|=||.++++++.  +.+.+|+.||.|..+++...+++..+    .++++++.|+.+....-.-..+||+|
T Consensus       122 ~~gkrvLnlFsYTGgfsv~Aa~--gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~I  199 (286)
T PF10672_consen  122 AKGKRVLNLFSYTGGFSVAAAA--GGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLI  199 (286)
T ss_dssp             CTTCEEEEET-TTTHHHHHHHH--TTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEE
T ss_pred             cCCCceEEecCCCCHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEE
Confidence            3578999999999999999875  35668999999987755444443333    37999999998754321123589999


Q ss_pred             EEcCC
Q 024665          218 FSDVA  222 (264)
Q Consensus       218 ~~d~p  222 (264)
                      ++|||
T Consensus       200 IlDPP  204 (286)
T PF10672_consen  200 ILDPP  204 (286)
T ss_dssp             EE--S
T ss_pred             EECCC
Confidence            99999

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=98.58  E-value=6.7e-08  Score=80.42  Aligned_cols=69  Identities=23%  Similarity=0.338  Sum_probs=53.9

Q ss_pred             EEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CC-eEEEEcCCCCchhhcccCCCccEEE
Q 024665          146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TN-VIPIIEDARHPAKYRMLVGMVDVIF  218 (264)
Q Consensus       146 ~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~n-V~~i~~D~~~~~~~~~~~~~fD~V~  218 (264)
                      +|||||||.|.+...|++.- -.+.+++||.|+.+++-+.+.|...  +| |++.+.|++++.   ...++||+|+
T Consensus        70 ~VlDLGtGNG~~L~~L~~eg-f~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~---~~~~qfdlvl  141 (227)
T KOG1271|consen   70 RVLDLGTGNGHLLFQLAKEG-FQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPD---FLSGQFDLVL  141 (227)
T ss_pred             ceeeccCCchHHHHHHHHhc-CCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCc---ccccceeEEe
Confidence            99999999999999999873 3557999999988865444444332  35 999999999974   3567888886

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.56  E-value=2.2e-07  Score=80.87  Aligned_cols=109  Identities=17%  Similarity=0.181  Sum_probs=79.1

Q ss_pred             CEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh-cCC-CeEEEEcCCCCchhhcccCC-CccEEEEcC
Q 024665          145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK-KRT-NVIPIIEDARHPAKYRMLVG-MVDVIFSDV  221 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~-~~~-nV~~i~~D~~~~~~~~~~~~-~fD~V~~d~  221 (264)
                      ..+||||||.|.+.+.+|.. .|+..++|||+....+..+++.+. ... ||.+++.||..+..+ +... ++|.|+++-
T Consensus        50 pi~lEIGfG~G~~l~~~A~~-nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~-~~~~~sl~~I~i~F  127 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKK-NPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDY-LIPDGSLDKIYINF  127 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHH-CCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHh-cCCCCCeeEEEEEC
Confidence            48999999999999999998 577889999999655445555443 344 999999999998765 3444 999999999


Q ss_pred             CCchHHHHHHHHHhCCCcHHHHHHHHHHhh-cchhhh
Q 024665          222 AQPDQVCFLCLILFQPIVINNLQSVNNETK-GGIFEF  257 (264)
Q Consensus       222 p~~~~~~~~~~~~l~~~~~~~l~~~~~~Lk-~g~f~~  257 (264)
                      |.||....+.-+.  ......++...+.|+ +|.+.+
T Consensus       128 PDPWpKkRH~KRR--l~~~~fl~~~a~~Lk~gG~l~~  162 (227)
T COG0220         128 PDPWPKKRHHKRR--LTQPEFLKLYARKLKPGGVLHF  162 (227)
T ss_pred             CCCCCCccccccc--cCCHHHHHHHHHHccCCCEEEE
Confidence            9888653332211  224445666666676 555543

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=98.56  E-value=2.5e-07  Score=78.19  Aligned_cols=73  Identities=19%  Similarity=0.109  Sum_probs=53.6

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcC
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDV  221 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~  221 (264)
                      ..-.++||+||+.|.+|..||.+..   .++++|+|+.+++...+.....+||++++.|+.+..    +.+.||+|++.-
T Consensus        42 ~ry~~alEvGCs~G~lT~~LA~rCd---~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~----P~~~FDLIV~SE  114 (201)
T PF05401_consen   42 RRYRRALEVGCSIGVLTERLAPRCD---RLLAVDISPRALARARERLAGLPHVEWIQADVPEFW----PEGRFDLIVLSE  114 (201)
T ss_dssp             SSEEEEEEE--TTSHHHHHHGGGEE---EEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT-------SS-EEEEEEES
T ss_pred             cccceeEecCCCccHHHHHHHHhhC---ceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCC----CCCCeeEEEEeh
Confidence            3446899999999999999999865   899999999887776666655679999999997754    357999999753

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK03612 spermidine synthase; Provisional

Probab=98.55  E-value=5.2e-07  Score=87.68  Aligned_cols=81  Identities=22%  Similarity=0.212  Sum_probs=61.0

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHH------h---hcCCCeEEEEcCCCCchhhcccCC
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNM------A---KKRTNVIPIIEDARHPAKYRMLVG  212 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~------a---~~~~nV~~i~~D~~~~~~~~~~~~  212 (264)
                      ++..+|||+|||+|.++..+++. .+..+|++||+++++++...+.      +   ...++++++++|+++...  ...+
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~--~~~~  372 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLR--KLAE  372 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHH--hCCC
Confidence            45579999999999999999875 3336999999999887554441      1   112589999999987543  2346


Q ss_pred             CccEEEEcCCCch
Q 024665          213 MVDVIFSDVAQPD  225 (264)
Q Consensus       213 ~fD~V~~d~p~~~  225 (264)
                      +||+|++|.+.|+
T Consensus       373 ~fDvIi~D~~~~~  385 (521)
T PRK03612        373 KFDVIIVDLPDPS  385 (521)
T ss_pred             CCCEEEEeCCCCC
Confidence            8999999988654

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.54  E-value=2e-07  Score=84.71  Aligned_cols=76  Identities=24%  Similarity=0.246  Sum_probs=62.1

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCCh--HHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSH--RSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~--~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      ++-.+..|||+|||+|.+++..|+.  .+.+|||||.|.  ..++++++.|....-|+++++.+.+..   .+.+++|+|
T Consensus        57 ~lf~dK~VlDVGcGtGILS~F~akA--GA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~---LP~eKVDiI  131 (346)
T KOG1499|consen   57 HLFKDKTVLDVGCGTGILSMFAAKA--GARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIE---LPVEKVDII  131 (346)
T ss_pred             hhcCCCEEEEcCCCccHHHHHHHHh--CcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEe---cCccceeEE
Confidence            4778999999999999999999987  477999999994  446666666666667999999998874   225899999


Q ss_pred             EEc
Q 024665          218 FSD  220 (264)
Q Consensus       218 ~~d  220 (264)
                      ++.
T Consensus       132 vSE  134 (346)
T KOG1499|consen  132 VSE  134 (346)
T ss_pred             eeh
Confidence            985

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.53  E-value=1.8e-08  Score=75.73  Aligned_cols=73  Identities=14%  Similarity=0.119  Sum_probs=40.5

Q ss_pred             EEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665          148 LYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       148 LDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      ||+|||+|.++..+++.. +..+++++|+|+.|+....+.....  .++..+..+..+.... ...++||+|++.-.
T Consensus         1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~V~~~~v   75 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDY-DPPESFDLVVASNV   75 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---C-CC----SEEEEE-T
T ss_pred             CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhc-ccccccceehhhhh
Confidence            799999999999999986 6779999999987742222222221  2455555555554322 12259999997543

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.52  E-value=3.8e-07  Score=73.70  Aligned_cols=68  Identities=28%  Similarity=0.365  Sum_probs=50.5

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      .+++.+|||+|||+|.++..+++.  +. +|+++|+++.+++.        .++.+...+..+..   ...++||+|++.
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~--~~-~~~g~D~~~~~~~~--------~~~~~~~~~~~~~~---~~~~~fD~i~~~   85 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKR--GF-EVTGVDISPQMIEK--------RNVVFDNFDAQDPP---FPDGSFDLIICN   85 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHT--TS-EEEEEESSHHHHHH--------TTSEEEEEECHTHH---CHSSSEEEEEEE
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHh--CC-EEEEEECCHHHHhh--------hhhhhhhhhhhhhh---ccccchhhHhhH
Confidence            578899999999999999999776  22 99999999877433        34455555444433   235799999987


Q ss_pred             CC
Q 024665          221 VA  222 (264)
Q Consensus       221 ~p  222 (264)
                      ..
T Consensus        86 ~~   87 (161)
T PF13489_consen   86 DV   87 (161)
T ss_dssp             SS
T ss_pred             HH
Confidence            55

...

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.51  E-value=4.4e-07  Score=82.01  Aligned_cols=76  Identities=29%  Similarity=0.236  Sum_probs=62.1

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHH--HHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRS--GRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIF  218 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~--~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~  218 (264)
                      --.+..|||+|||+|+++...|+.  .+.+|||||.|+-+  ++.+++-|...++|.+|.+-+++..    +++++|+|+
T Consensus       175 DF~~kiVlDVGaGSGILS~FAaqA--GA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdie----LPEk~DviI  248 (517)
T KOG1500|consen  175 DFQDKIVLDVGAGSGILSFFAAQA--GAKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIE----LPEKVDVII  248 (517)
T ss_pred             ccCCcEEEEecCCccHHHHHHHHh--CcceEEEEehhHHHHHHHHHHhcCCccceEEEccCcccccc----CchhccEEE
Confidence            346789999999999999999887  57799999999533  5666666655568999999998875    568999999


Q ss_pred             EcCC
Q 024665          219 SDVA  222 (264)
Q Consensus       219 ~d~p  222 (264)
                      +.|.
T Consensus       249 SEPM  252 (517)
T KOG1500|consen  249 SEPM  252 (517)
T ss_pred             eccc
Confidence            9876

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.51  E-value=9.2e-07  Score=80.13  Aligned_cols=74  Identities=9%  Similarity=0.016  Sum_probs=54.8

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh---cCCCeEEEEcCCCCchhhcccCCCccE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK---KRTNVIPIIEDARHPAKYRMLVGMVDV  216 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~---~~~nV~~i~~D~~~~~~~~~~~~~fD~  216 (264)
                      .+++..+|||+|||+|.+++.+++.. |..+++++|. +.+++...+.+.   ...+|+++.+|+.+..    + +.+|+
T Consensus       146 ~~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~----~-~~~D~  218 (306)
T TIGR02716       146 KLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES----Y-PEADA  218 (306)
T ss_pred             CCCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC----C-CCCCE
Confidence            47888999999999999999999986 6789999998 455433333322   2347999999987632    1 34798


Q ss_pred             EEEc
Q 024665          217 IFSD  220 (264)
Q Consensus       217 V~~d  220 (264)
                      |++.
T Consensus       219 v~~~  222 (306)
T TIGR02716       219 VLFC  222 (306)
T ss_pred             EEeE
Confidence            8753

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.50  E-value=1.1e-06  Score=76.05  Aligned_cols=112  Identities=21%  Similarity=0.235  Sum_probs=75.9

Q ss_pred             CCceeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCC-CCCEEEEEcccCChHHHHHHHHhCCCCEEEEE
Q 024665           96 AGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIK-PGARVLYLGAASGTTVSHVSDIVGPNGVVYAV  174 (264)
Q Consensus        96 ~g~~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~-~g~~VLDlG~G~G~~s~~la~~~~~~g~V~av  174 (264)
                      |+..+-.+..+.+.++         -.+|.|+-+..+...++++.+. ++..|||+|+.||.+|..+.+.  .+.+||||
T Consensus        40 P~~~V~~~~~i~v~~~---------~~~yVSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~--gAk~Vyav  108 (245)
T COG1189          40 PSQLVDIDDEIEVKGE---------EQPYVSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQR--GAKHVYAV  108 (245)
T ss_pred             cceecCCCceEEEccc---------CcCccccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHc--CCcEEEEE
Confidence            4544444445555533         2456788777888888877664 6889999999999999999998  57799999


Q ss_pred             eCChHHHHHHHHHhhcCCCeEEE-EcCCCCchhhcccCCCccEEEEcCC
Q 024665          175 EFSHRSGRDLVNMAKKRTNVIPI-IEDARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       175 D~s~~~~~~l~~~a~~~~nV~~i-~~D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      |+...   ++.......++|..+ .-+++.+.+. .+.+..|+|++|++
T Consensus       109 DVG~~---Ql~~kLR~d~rV~~~E~tN~r~l~~~-~~~~~~d~~v~DvS  153 (245)
T COG1189         109 DVGYG---QLHWKLRNDPRVIVLERTNVRYLTPE-DFTEKPDLIVIDVS  153 (245)
T ss_pred             EccCC---ccCHhHhcCCcEEEEecCChhhCCHH-HcccCCCeEEEEee
Confidence            99842   122222333455443 4455554433 34458999999998

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.50  E-value=1.2e-06  Score=80.04  Aligned_cols=79  Identities=9%  Similarity=0.008  Sum_probs=55.0

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC----CCeEEEE-cCCCCchhh-cccCCCccE
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR----TNVIPII-EDARHPAKY-RMLVGMVDV  216 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~----~nV~~i~-~D~~~~~~~-~~~~~~fD~  216 (264)
                      +..+|||||||+|.+...|+... +..+++|+|+++.+++.+.+.+..+    .+|++++ .|..+.... ....+.||+
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl  192 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDA  192 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEE
Confidence            56799999999999988888764 4568999999987765544444433    3677754 344332211 012358999


Q ss_pred             EEEcCC
Q 024665          217 IFSDVA  222 (264)
Q Consensus       217 V~~d~p  222 (264)
                      |+||||
T Consensus       193 ivcNPP  198 (321)
T PRK11727        193 TLCNPP  198 (321)
T ss_pred             EEeCCC
Confidence            999999

>TIGR03438 probable methyltransferase

Probab=98.49  E-value=9.6e-07  Score=80.04  Aligned_cols=65  Identities=15%  Similarity=0.179  Sum_probs=51.1

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc-C--CCeEEEEcCCCCch
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-R--TNVIPIIEDARHPA  205 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~-~--~nV~~i~~D~~~~~  205 (264)
                      +.++.+|||+|||+|.++..|++.+....+|+++|+|+.|++.+.+.... .  .+|.++++|+.+..
T Consensus        61 ~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~  128 (301)
T TIGR03438        61 TGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPL  128 (301)
T ss_pred             hCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchh
Confidence            45778999999999999999998864346899999999987666555432 2  25788999998753

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.49  E-value=1e-06  Score=77.75  Aligned_cols=82  Identities=15%  Similarity=0.190  Sum_probs=64.2

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHH---HHHHHHHhhcCCCeEEEEcCCCCchhhcc----cCCC
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRS---GRDLVNMAKKRTNVIPIIEDARHPAKYRM----LVGM  213 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~---~~~l~~~a~~~~nV~~i~~D~~~~~~~~~----~~~~  213 (264)
                      ..+-.+||++|+.+|+.++.+|..+.+.++|+++|.++..   ++++++.+....+|+++++|+.+..+.-.    ..++
T Consensus        77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~  156 (247)
T PLN02589         77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT  156 (247)
T ss_pred             HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence            3345689999999999999999988888999999999755   44455555555699999999988643211    1258


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      ||+||.|..
T Consensus       157 fD~iFiDad  165 (247)
T PLN02589        157 FDFIFVDAD  165 (247)
T ss_pred             ccEEEecCC
Confidence            999999987

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.47  E-value=7e-07  Score=77.67  Aligned_cols=76  Identities=11%  Similarity=0.062  Sum_probs=57.8

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc--------------CCCeEEEEcCCCCch
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--------------RTNVIPIIEDARHPA  205 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~--------------~~nV~~i~~D~~~~~  205 (264)
                      .+.++.+||+.+||.|.-...||+.   .-.|+|||+|+.+++...+.+..              ..+|+++++|+.++.
T Consensus        40 ~~~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~  116 (226)
T PRK13256         40 NINDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLP  116 (226)
T ss_pred             CCCCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCC
Confidence            3557789999999999999999987   34799999999887766553311              138999999999875


Q ss_pred             hhcccCCCccEEE
Q 024665          206 KYRMLVGMVDVIF  218 (264)
Q Consensus       206 ~~~~~~~~fD~V~  218 (264)
                      ......+.||+|+
T Consensus       117 ~~~~~~~~fD~Vy  129 (226)
T PRK13256        117 KIANNLPVFDIWY  129 (226)
T ss_pred             ccccccCCcCeee
Confidence            3212345899986

>TIGR00417 speE spermidine synthase

Probab=98.46  E-value=2.1e-06  Score=76.65  Aligned_cols=78  Identities=18%  Similarity=0.134  Sum_probs=57.7

Q ss_pred             CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh------cCCCeEEEEcCCCCchhhcccCCCccEE
Q 024665          144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK------KRTNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~------~~~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      ..+||++|||+|.++..++... +..+|+++|+++.+++.+.+...      ..+++++++.|+.+...  ...++||+|
T Consensus        73 p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~--~~~~~yDvI  149 (270)
T TIGR00417        73 PKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLA--DTENTFDVI  149 (270)
T ss_pred             CCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHH--hCCCCccEE
Confidence            3499999999999998887663 35689999999887655444321      12478899999876543  234689999


Q ss_pred             EEcCCCc
Q 024665          218 FSDVAQP  224 (264)
Q Consensus       218 ~~d~p~~  224 (264)
                      ++|.+.|
T Consensus       150 i~D~~~~  156 (270)
T TIGR00417       150 IVDSTDP  156 (270)
T ss_pred             EEeCCCC
Confidence            9998743

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.45  E-value=3.6e-07  Score=83.82  Aligned_cols=91  Identities=27%  Similarity=0.289  Sum_probs=71.0

Q ss_pred             chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc--CCCeEEEEcCCC
Q 024665          125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--RTNVIPIIEDAR  202 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~--~~nV~~i~~D~~  202 (264)
                      .|.++++++      ...+++.|+|.||.+|..|+|+|.++.+.+++||+|.+++-++.+..+...  ..+++.+++|+.
T Consensus       201 asclpA~ll------~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~  274 (413)
T KOG2360|consen  201 ASCLPAHLL------DPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFL  274 (413)
T ss_pred             hhcchhhhc------CCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCcccccccccc
Confidence            678888887      578899999999999999999999999999999999996554444443332  237888899998


Q ss_pred             CchhhcccCCCccEEEEcCC
Q 024665          203 HPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       203 ~~~~~~~~~~~fD~V~~d~p  222 (264)
                      .. .+...-..+..|++|++
T Consensus       275 ~t-~~~~~~~~v~~iL~Dps  293 (413)
T KOG2360|consen  275 NT-ATPEKFRDVTYILVDPS  293 (413)
T ss_pred             CC-CCcccccceeEEEeCCC
Confidence            74 32223357889999998

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.44  E-value=8.4e-07  Score=81.02  Aligned_cols=120  Identities=20%  Similarity=0.106  Sum_probs=77.6

Q ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEc-CCC
Q 024665          126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIE-DAR  202 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~-D~~  202 (264)
                      ++++..+.+...   +++|+.|||=.||||++.+.+.-.   ..+|+++|++.+|++....+....  ....++.. |++
T Consensus       183 P~lAR~mVNLa~---v~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~  256 (347)
T COG1041         183 PRLARAMVNLAR---VKRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDAT  256 (347)
T ss_pred             HHHHHHHHHHhc---cccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccc
Confidence            566666654444   999999999999999999998865   458999999998875533322221  24545555 998


Q ss_pred             CchhhcccCCCccEEEEcCCCchHH--HHHHHHHhCCCcHHHHHHHHHHhh-cchhhh
Q 024665          203 HPAKYRMLVGMVDVIFSDVAQPDQV--CFLCLILFQPIVINNLQSVNNETK-GGIFEF  257 (264)
Q Consensus       203 ~~~~~~~~~~~fD~V~~d~p~~~~~--~~~~~~~l~~~~~~~l~~~~~~Lk-~g~f~~  257 (264)
                      +++.   ..+.||.|++|||.--..  ....+..|   ....++++.+.|+ +|.+.|
T Consensus       257 ~lpl---~~~~vdaIatDPPYGrst~~~~~~l~~L---y~~~le~~~evLk~gG~~vf  308 (347)
T COG1041         257 NLPL---RDNSVDAIATDPPYGRSTKIKGEGLDEL---YEEALESASEVLKPGGRIVF  308 (347)
T ss_pred             cCCC---CCCccceEEecCCCCcccccccccHHHH---HHHHHHHHHHHhhcCcEEEE
Confidence            8761   223699999999932111  11111222   4445677777787 444443

>PRK10742 putative methyltransferase; Provisional

Probab=98.44  E-value=1.2e-06  Score=76.85  Aligned_cols=81  Identities=15%  Similarity=0.038  Sum_probs=62.2

Q ss_pred             CCCCCC--EEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHH---HHHHHHHhh--------cCCCeEEEEcCCCCchh
Q 024665          140 WIKPGA--RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRS---GRDLVNMAK--------KRTNVIPIIEDARHPAK  206 (264)
Q Consensus       140 ~l~~g~--~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~---~~~l~~~a~--------~~~nV~~i~~D~~~~~~  206 (264)
                      .++++.  +|||+.||+|..++.+|.+   .++|++||.++.+   +++.++.+.        ...++++++.|+.+...
T Consensus        83 glk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~  159 (250)
T PRK10742         83 GIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALT  159 (250)
T ss_pred             CCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHh
Confidence            488888  9999999999999999987   4579999999755   444444431        11379999999988654


Q ss_pred             hcccCCCccEEEEcCCCch
Q 024665          207 YRMLVGMVDVIFSDVAQPD  225 (264)
Q Consensus       207 ~~~~~~~fD~V~~d~p~~~  225 (264)
                      .  ....||+|++||+.|+
T Consensus       160 ~--~~~~fDVVYlDPMfp~  176 (250)
T PRK10742        160 D--ITPRPQVVYLDPMFPH  176 (250)
T ss_pred             h--CCCCCcEEEECCCCCC
Confidence            2  3347999999999554

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=98.43  E-value=2.3e-06  Score=78.20  Aligned_cols=74  Identities=23%  Similarity=0.214  Sum_probs=57.7

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      +.++.+||||||+||.||..|++.   ..+|||||..+ +    .......++|+.++.|.....+   ....+|+|++|
T Consensus       209 ~~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~-l----~~~L~~~~~V~h~~~d~fr~~p---~~~~vDwvVcD  277 (357)
T PRK11760        209 LAPGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGP-M----AQSLMDTGQVEHLRADGFKFRP---PRKNVDWLVCD  277 (357)
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechh-c----CHhhhCCCCEEEEeccCcccCC---CCCCCCEEEEe
Confidence            578999999999999999999987   34999999764 2    2222334689999999877543   14689999999


Q ss_pred             CC-Cch
Q 024665          221 VA-QPD  225 (264)
Q Consensus       221 ~p-~~~  225 (264)
                      +. .|.
T Consensus       278 mve~P~  283 (357)
T PRK11760        278 MVEKPA  283 (357)
T ss_pred             cccCHH
Confidence            99 344

>PRK01581 speE spermidine synthase; Validated

Probab=98.43  E-value=7.9e-07  Score=82.09  Aligned_cols=79  Identities=24%  Similarity=0.191  Sum_probs=59.0

Q ss_pred             CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHH------hh---cCCCeEEEEcCCCCchhhcccCCCc
Q 024665          144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNM------AK---KRTNVIPIIEDARHPAKYRMLVGMV  214 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~------a~---~~~nV~~i~~D~~~~~~~~~~~~~f  214 (264)
                      -.+||++|||.|..+..+++. .+..+|++||+++++++.+.+.      +.   ..++++++++|+.++...  ..++|
T Consensus       151 PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~--~~~~Y  227 (374)
T PRK01581        151 PKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS--PSSLY  227 (374)
T ss_pred             CCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh--cCCCc
Confidence            359999999999988877765 3456899999999886544421      11   235899999999986532  34689


Q ss_pred             cEEEEcCCCch
Q 024665          215 DVIFSDVAQPD  225 (264)
Q Consensus       215 D~V~~d~p~~~  225 (264)
                      |+|++|.+.|.
T Consensus       228 DVIIvDl~DP~  238 (374)
T PRK01581        228 DVIIIDFPDPA  238 (374)
T ss_pred             cEEEEcCCCcc
Confidence            99999988653

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.41  E-value=1.7e-06  Score=86.99  Aligned_cols=97  Identities=19%  Similarity=0.233  Sum_probs=69.9

Q ss_pred             CcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhC------------------------------------
Q 024665          123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVG------------------------------------  166 (264)
Q Consensus       123 p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~------------------------------------  166 (264)
                      |-+..+++.++....  +.+++..++|.+||||++.+..|....                                    
T Consensus       172 pl~etlAaa~l~~a~--w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~  249 (702)
T PRK11783        172 PLKENLAAAILLRSG--WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERAR  249 (702)
T ss_pred             CCcHHHHHHHHHHcC--CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHh
Confidence            445788888885443  226789999999999999999886421                                    


Q ss_pred             -----CCCEEEEEeCChHHHHHHHHHhh---cCCCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665          167 -----PNGVVYAVEFSHRSGRDLVNMAK---KRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       167 -----~~g~V~avD~s~~~~~~l~~~a~---~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                           ...+|+|+|+++++++.+.+++.   ....|++++.|+.+.... ...+.||+|++|||
T Consensus       250 ~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~-~~~~~~d~IvtNPP  312 (702)
T PRK11783        250 AGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNP-LPKGPTGLVISNPP  312 (702)
T ss_pred             hcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccc-cccCCCCEEEECCC
Confidence                 12379999999888654444433   333689999999886431 11247999999999

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.38  E-value=3.1e-06  Score=78.29  Aligned_cols=102  Identities=24%  Similarity=0.252  Sum_probs=74.6

Q ss_pred             eecceEeC---CcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCC------------------------
Q 024665          115 KVEYRIWN---PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGP------------------------  167 (264)
Q Consensus       115 ~~~yr~~~---p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~------------------------  167 (264)
                      +..||+.+   |-...|++.|+...   ..++++.++|--||||++.+..|.+...                        
T Consensus       163 kRGyR~~~g~ApLketLAaAil~la---gw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~  239 (381)
T COG0116         163 KRGYRVYDGPAPLKETLAAAILLLA---GWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDK  239 (381)
T ss_pred             hccccccCCCCCchHHHHHHHHHHc---CCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHH
Confidence            34455533   33367777777443   3788889999999999999999977531                        


Q ss_pred             -------CC-------EEEEEeCChHHHHHHHHHhh---cCCCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665          168 -------NG-------VVYAVEFSHRSGRDLVNMAK---KRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       168 -------~g-------~V~avD~s~~~~~~l~~~a~---~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                             ..       .+|++|+++++++-+..++.   ..+-|+|++.|++++...  . +.+|+|++|||
T Consensus       240 ~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~--~-~~~gvvI~NPP  308 (381)
T COG0116         240 LREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEP--L-EEYGVVISNPP  308 (381)
T ss_pred             HHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC--C-CcCCEEEeCCC
Confidence                   11       48899999988655544443   344799999999987642  2 78999999999

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.36  E-value=4.5e-06  Score=72.37  Aligned_cols=76  Identities=18%  Similarity=0.068  Sum_probs=55.9

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      ..++.+|||+|||+|.++..+++.   ..+|+++|+++.+++.+.+.... ..++.++..|+.+....  ..++||+|++
T Consensus        46 ~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~fD~Ii~  120 (233)
T PRK05134         46 GLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAE--HPGQFDVVTC  120 (233)
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhh--cCCCccEEEE
Confidence            567889999999999999999876   34799999998776554443322 23678888888765421  2368999987


Q ss_pred             cC
Q 024665          220 DV  221 (264)
Q Consensus       220 d~  221 (264)
                      ..
T Consensus       121 ~~  122 (233)
T PRK05134        121 ME  122 (233)
T ss_pred             hh
Confidence            53

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.34  E-value=3.7e-06  Score=72.23  Aligned_cols=91  Identities=20%  Similarity=0.153  Sum_probs=62.2

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC-C-CeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-T-NVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~-~-nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      .+.+|||+|||+|.++..+++..   .+|+++|+++.+++.+.+..... . ++.+++.|+.+....  ..++||+|+++
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~D~i~~~  119 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEK--GAKSFDVVTCM  119 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcC--CCCCccEEEeh
Confidence            47899999999999999998752   36999999988865555443322 2 688888988765421  23689999985


Q ss_pred             CC-----CchHHHHHHHHHhCCC
Q 024665          221 VA-----QPDQVCFLCLILFQPI  238 (264)
Q Consensus       221 ~p-----~~~~~~~~~~~~l~~~  238 (264)
                      ..     .+..........+.+.
T Consensus       120 ~~l~~~~~~~~~l~~~~~~L~~g  142 (224)
T TIGR01983       120 EVLEHVPDPQAFIRACAQLLKPG  142 (224)
T ss_pred             hHHHhCCCHHHHHHHHHHhcCCC
Confidence            32     3444434444444444

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK04148 hypothetical protein; Provisional

Probab=98.33  E-value=9.2e-06  Score=64.93  Aligned_cols=77  Identities=14%  Similarity=0.145  Sum_probs=57.0

Q ss_pred             CCCCEEEEEcccCCh-HHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          142 KPGARVLYLGAASGT-TVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~-~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      ..+.+|||+|||+|. ++..|++.   ...|+|+|+++.+.    +.++.. .+.+++.|+.++..  .+-..+|+|.+-
T Consensus        15 ~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV----~~a~~~-~~~~v~dDlf~p~~--~~y~~a~liysi   84 (134)
T PRK04148         15 GKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAV----EKAKKL-GLNAFVDDLFNPNL--EIYKNAKLIYSI   84 (134)
T ss_pred             ccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHH----HHHHHh-CCeEEECcCCCCCH--HHHhcCCEEEEe
Confidence            456799999999996 88888854   35899999999764    333222 47899999998763  234689999987


Q ss_pred             CCCchHHH
Q 024665          221 VAQPDQVC  228 (264)
Q Consensus       221 ~p~~~~~~  228 (264)
                      -|+|+...
T Consensus        85 rpp~el~~   92 (134)
T PRK04148         85 RPPRDLQP   92 (134)
T ss_pred             CCCHHHHH
Confidence            77665433

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.32  E-value=1.1e-06  Score=75.39  Aligned_cols=85  Identities=20%  Similarity=0.147  Sum_probs=59.7

Q ss_pred             hHHHHHHHhcccccCCCC--CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCC
Q 024665          126 SKLAAAVLGGVDNIWIKP--GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARH  203 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~--g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~  203 (264)
                      .+++...+..|+   +++  ..-|||+|||||..+..+.+.   .-..++||+|+.|++...+..-   .-.++.+|+-+
T Consensus        34 ~em~eRaLELLa---lp~~~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~e~---egdlil~DMG~  104 (270)
T KOG1541|consen   34 AEMAERALELLA---LPGPKSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVEREL---EGDLILCDMGE  104 (270)
T ss_pred             HHHHHHHHHHhh---CCCCCCcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHHhhh---hcCeeeeecCC
Confidence            445555554444   544  668999999999999999875   2479999999999766554221   23577888876


Q ss_pred             chhhcccCCCccEEEEcC
Q 024665          204 PAKYRMLVGMVDVIFSDV  221 (264)
Q Consensus       204 ~~~~~~~~~~fD~V~~d~  221 (264)
                      ..++  ..+.||.||+--
T Consensus       105 Glpf--rpGtFDg~ISIS  120 (270)
T KOG1541|consen  105 GLPF--RPGTFDGVISIS  120 (270)
T ss_pred             CCCC--CCCccceEEEee
Confidence            5543  467999998643

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.26  E-value=3.1e-06  Score=80.71  Aligned_cols=75  Identities=29%  Similarity=0.260  Sum_probs=51.7

Q ss_pred             CCEEEEEcccCChHHHHHHHH---hCCCCEEEEEeCChHHHHHHH---HHhhcCCCeEEEEcCCCCchhhcccCCCccEE
Q 024665          144 GARVLYLGAASGTTVSHVSDI---VGPNGVVYAVEFSHRSGRDLV---NMAKKRTNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~---~~~~g~V~avD~s~~~~~~l~---~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      +..|||+|||+|.++..+++.   ...+.+|||||.++.+...+.   +.+.-..+|+++++|+++..    +.+++|+|
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~----lpekvDII  262 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVE----LPEKVDII  262 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSC----HSS-EEEE
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCC----CCCceeEE
Confidence            568999999999998766544   234569999999986654433   33444468999999999976    34699999


Q ss_pred             EEcCC
Q 024665          218 FSDVA  222 (264)
Q Consensus       218 ~~d~p  222 (264)
                      ++-.-
T Consensus       263 VSElL  267 (448)
T PF05185_consen  263 VSELL  267 (448)
T ss_dssp             EE---
T ss_pred             EEecc
Confidence            98655

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.24  E-value=5.7e-06  Score=69.39  Aligned_cols=70  Identities=21%  Similarity=0.181  Sum_probs=54.3

Q ss_pred             CEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665          145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      +.+.|||+|||.++...|...   -+|||||.+|..++-+.++.+..  .|++++.+|+++..     .+..|+|+|.+.
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~A---~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~-----fe~ADvvicEml  105 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHAA---ERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYD-----FENADVVICEML  105 (252)
T ss_pred             hceeeccCCcchHHHHHHhhh---ceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccc-----ccccceeHHHHh
Confidence            789999999999999999874   38999999986654333332222  39999999999865     268999998654

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.23  E-value=4.5e-06  Score=75.65  Aligned_cols=82  Identities=18%  Similarity=0.122  Sum_probs=51.4

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHh------CCCCEEEEEeCChHHHHHHHHHhhcC----CCeEEEEcCCCCchhhcc
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIV------GPNGVVYAVEFSHRSGRDLVNMAKKR----TNVIPIIEDARHPAKYRM  209 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~------~~~g~V~avD~s~~~~~~l~~~a~~~----~nV~~i~~D~~~~~~~~~  209 (264)
                      .++++++|||.+||+|.+.+.+.+.+      .....+||+|+++.++.-........    .+..+++.|....+.. .
T Consensus        43 ~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~-~  121 (311)
T PF02384_consen   43 NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKF-I  121 (311)
T ss_dssp             TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSC-T
T ss_pred             hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccc-c
Confidence            47788899999999999999988864      24668999999986643222111111    2456889998765432 1


Q ss_pred             cCCCccEEEEcCC
Q 024665          210 LVGMVDVIFSDVA  222 (264)
Q Consensus       210 ~~~~fD~V~~d~p  222 (264)
                      ...+||+|++|||
T Consensus       122 ~~~~~D~ii~NPP  134 (311)
T PF02384_consen  122 KNQKFDVIIGNPP  134 (311)
T ss_dssp             ST--EEEEEEE--
T ss_pred             cccccccccCCCC
Confidence            1368999999999

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.22  E-value=2.4e-06  Score=74.11  Aligned_cols=99  Identities=15%  Similarity=0.080  Sum_probs=64.2

Q ss_pred             CCCCC-EEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEE-------EcCCCCchhhcccCC
Q 024665          141 IKPGA-RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPI-------IEDARHPAKYRMLVG  212 (264)
Q Consensus       141 l~~g~-~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i-------~~D~~~~~~~~~~~~  212 (264)
                      ..++. .++|+|||+|-.+..+|++..   +|+|+|+|+.|+    +.+++.+++...       ..+..++.   -.++
T Consensus        30 ~~~~h~~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL----~~a~k~~~~~y~~t~~~ms~~~~v~L~---g~e~   99 (261)
T KOG3010|consen   30 RTEGHRLAWDVGTGNGQAARGIAEHYK---EVIATDVSEAML----KVAKKHPPVTYCHTPSTMSSDEMVDLL---GGEE   99 (261)
T ss_pred             hCCCcceEEEeccCCCcchHHHHHhhh---hheeecCCHHHH----HHhhcCCCcccccCCcccccccccccc---CCCc
Confidence            44555 899999999988889999865   899999999774    455554443322       22222222   1257


Q ss_pred             CccEEEEcCCCchHHHHHHHHHhCCCcHHHHHHHHHHhh--cchhhhhhh
Q 024665          213 MVDVIFSDVAQPDQVCFLCLILFQPIVINNLQSVNNETK--GGIFEFLFS  260 (264)
Q Consensus       213 ~fD~V~~d~p~~~~~~~~~~~~l~~~~~~~l~~~~~~Lk--~g~f~~l~~  260 (264)
                      ++|+|++-           ...|.-.+....+.+.+.|+  +++++++.+
T Consensus       100 SVDlI~~A-----------qa~HWFdle~fy~~~~rvLRk~Gg~iavW~Y  138 (261)
T KOG3010|consen  100 SVDLITAA-----------QAVHWFDLERFYKEAYRVLRKDGGLIAVWNY  138 (261)
T ss_pred             ceeeehhh-----------hhHHhhchHHHHHHHHHHcCCCCCEEEEEEc
Confidence            89999863           22334445566777777787  446666643

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=98.16  E-value=1.6e-05  Score=72.13  Aligned_cols=94  Identities=18%  Similarity=0.215  Sum_probs=71.8

Q ss_pred             chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCC
Q 024665          125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARH  203 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~  203 (264)
                      .+-|..+++..|.   ++|+..+||.-+|.|.-|..+++.+. .++|||+|.++.++....+.... ..++++++.+..+
T Consensus         5 ~pVll~Evl~~L~---~~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~   80 (305)
T TIGR00006         5 QSVLLDEVVEGLN---IKPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN   80 (305)
T ss_pred             cchhHHHHHHhcC---cCCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence            4567777776665   88999999999999999999999875 48999999999876444333222 2379999999988


Q ss_pred             chhhc--ccCCCccEEEEcCC
Q 024665          204 PAKYR--MLVGMVDVIFSDVA  222 (264)
Q Consensus       204 ~~~~~--~~~~~fD~V~~d~p  222 (264)
                      +..+-  ....++|.|++|.-
T Consensus        81 l~~~l~~~~~~~vDgIl~DLG  101 (305)
T TIGR00006        81 FFEHLDELLVTKIDGILVDLG  101 (305)
T ss_pred             HHHHHHhcCCCcccEEEEecc
Confidence            76431  12357999999865

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=1.4e-05  Score=68.13  Aligned_cols=95  Identities=22%  Similarity=0.242  Sum_probs=70.5

Q ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEE-EEEeCChHHHHHHHHHhh------------cCC
Q 024665          126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVV-YAVEFSHRSGRDLVNMAK------------KRT  192 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V-~avD~s~~~~~~l~~~a~------------~~~  192 (264)
                      +.+.+.++..|+ -+++||.+.||+|+|||++|..++.+++..+.+ .+||.-+++++..+++..            ++.
T Consensus        66 p~mha~~le~L~-~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~  144 (237)
T KOG1661|consen   66 PHMHATALEYLD-DHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRG  144 (237)
T ss_pred             hHHHHHHHHHHH-HhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccC
Confidence            345566665553 148899999999999999999999999888764 999998876544443322            123


Q ss_pred             CeEEEEcCCCCchhhcccCCCccEEEEcCCCc
Q 024665          193 NVIPIIEDARHPAKYRMLVGMVDVIFSDVAQP  224 (264)
Q Consensus       193 nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~~  224 (264)
                      ++.++.+|.+....   ...+||+|.+-+..+
T Consensus       145 ~l~ivvGDgr~g~~---e~a~YDaIhvGAaa~  173 (237)
T KOG1661|consen  145 ELSIVVGDGRKGYA---EQAPYDAIHVGAAAS  173 (237)
T ss_pred             ceEEEeCCccccCC---ccCCcceEEEccCcc
Confidence            78899999988653   346899999986644

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.13  E-value=3.5e-05  Score=66.17  Aligned_cols=84  Identities=20%  Similarity=0.198  Sum_probs=50.4

Q ss_pred             cCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHH---HHHHHHhh-------c-CCCeEEEEcCCCCchhh
Q 024665          139 IWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSG---RDLVNMAK-------K-RTNVIPIIEDARHPAKY  207 (264)
Q Consensus       139 ~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~---~~l~~~a~-------~-~~nV~~i~~D~~~~~~~  207 (264)
                      +.+.+++..+|||||.|...+.+|...+ -.++++||+.+...   +.+.+...       . ...++++++|+.+....
T Consensus        38 ~~l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~  116 (205)
T PF08123_consen   38 LNLTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFV  116 (205)
T ss_dssp             TT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHH
T ss_pred             hCCCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhH
Confidence            3489999999999999999999987753 44699999996442   22222111       1 23788999999886533


Q ss_pred             cccCCCccEEEEcCCC
Q 024665          208 RMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       208 ~~~~~~fD~V~~d~p~  223 (264)
                      .......|+||+|-..
T Consensus       117 ~~~~s~AdvVf~Nn~~  132 (205)
T PF08123_consen  117 KDIWSDADVVFVNNTC  132 (205)
T ss_dssp             HHHGHC-SEEEE--TT
T ss_pred             hhhhcCCCEEEEeccc
Confidence            2334678999998663

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.13  E-value=6.1e-06  Score=80.00  Aligned_cols=84  Identities=14%  Similarity=0.159  Sum_probs=64.0

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      .....+||+|||.|.++..+|... |+..++|||++...+..++..+...  .|+.+++.|+..+..+ ....++|.|++
T Consensus       346 ~~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~-~~~~sv~~i~i  423 (506)
T PRK01544        346 EKRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILND-LPNNSLDGIYI  423 (506)
T ss_pred             CCCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHh-cCcccccEEEE
Confidence            346789999999999999999884 6778999999965555555544332  3999999887654432 34468999999


Q ss_pred             cCCCchHH
Q 024665          220 DVAQPDQV  227 (264)
Q Consensus       220 d~p~~~~~  227 (264)
                      +.|.||..
T Consensus       424 ~FPDPWpK  431 (506)
T PRK01544        424 LFPDPWIK  431 (506)
T ss_pred             ECCCCCCC
Confidence            99988754

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.12  E-value=1.9e-05  Score=65.88  Aligned_cols=106  Identities=22%  Similarity=0.197  Sum_probs=51.4

Q ss_pred             ceecceEeCCcchHHHHHHHhccc---ccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHH---HHHHH
Q 024665          114 TKVEYRIWNPFRSKLAAAVLGGVD---NIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGR---DLVNM  187 (264)
Q Consensus       114 ~~~~yr~~~p~~s~l~~~il~~l~---~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~---~l~~~  187 (264)
                      .-..+.+|. -+.-|+..+.....   .....++.+|||||||+|..++.+|... ...+|+..|.++ ++.   .+++.
T Consensus        14 ~~~G~~vW~-aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~   90 (173)
T PF10294_consen   14 DGTGGKVWP-AALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIEL   90 (173)
T ss_dssp             ----------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHT
T ss_pred             cCCcEEEec-hHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHh
Confidence            344566672 23344544543221   1246678899999999999999999874 456899999997 433   33333


Q ss_pred             hh--cCCCeEEEEcCCCCchhhccc-CCCccEEE-EcCC
Q 024665          188 AK--KRTNVIPIIEDARHPAKYRML-VGMVDVIF-SDVA  222 (264)
Q Consensus       188 a~--~~~nV~~i~~D~~~~~~~~~~-~~~fD~V~-~d~p  222 (264)
                      |.  ...+|.+...|..+....... ..+||+|+ +|+.
T Consensus        91 N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~  129 (173)
T PF10294_consen   91 NGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVL  129 (173)
T ss_dssp             T--------EEEE--TTS-HHHHHHS-SSBSEEEEES--
T ss_pred             ccccccccccCcEEEecCcccccccccccCCEEEEeccc
Confidence            32  234788888887663311122 34899999 5655

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PLN02823 spermine synthase

Probab=98.09  E-value=2.6e-05  Score=71.77  Aligned_cols=78  Identities=22%  Similarity=0.196  Sum_probs=59.4

Q ss_pred             CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh------cCCCeEEEEcCCCCchhhcccCCCccEE
Q 024665          144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK------KRTNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~------~~~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      -.+||.+|+|.|.++..+++.. +..+|+.||+++.+++-+.+...      ..++++++++|+++...  ...++||+|
T Consensus       104 pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~--~~~~~yDvI  180 (336)
T PLN02823        104 PKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELE--KRDEKFDVI  180 (336)
T ss_pred             CCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHh--hCCCCccEE
Confidence            3689999999999998888752 34589999999988655444332      13589999999998653  234689999


Q ss_pred             EEcCCCc
Q 024665          218 FSDVAQP  224 (264)
Q Consensus       218 ~~d~p~~  224 (264)
                      ++|.+.|
T Consensus       181 i~D~~dp  187 (336)
T PLN02823        181 IGDLADP  187 (336)
T ss_pred             EecCCCc
Confidence            9997654

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=98.06  E-value=3.3e-06  Score=72.75  Aligned_cols=89  Identities=26%  Similarity=0.243  Sum_probs=62.2

Q ss_pred             chHHHHHHHhcccccCCCCC-CEEEEEcccCChHHHHHHHHhCC----CC----EEEEEeCChHHHHHHHHHhhcCCCeE
Q 024665          125 RSKLAAAVLGGVDNIWIKPG-ARVLYLGAASGTTVSHVSDIVGP----NG----VVYAVEFSHRSGRDLVNMAKKRTNVI  195 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~l~~g-~~VLDlG~G~G~~s~~la~~~~~----~g----~V~avD~s~~~~~~l~~~a~~~~nV~  195 (264)
                      +..-+-++|..=+++++-.| .+|+|||+++|+|+..|++.+..    .+    +|+|||+.+        ++.. .-|.
T Consensus        22 RARSAFKLlqideef~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~--------MaPI-~GV~   92 (294)
T KOG1099|consen   22 RARSAFKLLQIDEEFQIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP--------MAPI-EGVI   92 (294)
T ss_pred             hHHhHHHHhhhhhhhhHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc--------CCcc-CceE
Confidence            44444455544445555444 57999999999999999988753    11    399999986        2333 3688


Q ss_pred             EEEcCCCCchhh-----cccCCCccEEEEcCC
Q 024665          196 PIIEDARHPAKY-----RMLVGMVDVIFSDVA  222 (264)
Q Consensus       196 ~i~~D~~~~~~~-----~~~~~~fD~V~~d~p  222 (264)
                      .+++|+++....     .+-.++.|+|++|-+
T Consensus        93 qlq~DIT~~stae~Ii~hfggekAdlVvcDGA  124 (294)
T KOG1099|consen   93 QLQGDITSASTAEAIIEHFGGEKADLVVCDGA  124 (294)
T ss_pred             EeecccCCHhHHHHHHHHhCCCCccEEEeCCC
Confidence            999999986532     122358999999966

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.05  E-value=9.4e-06  Score=70.32  Aligned_cols=74  Identities=22%  Similarity=0.241  Sum_probs=56.7

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc--------------CCCeEEEEcCCCCch
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--------------RTNVIPIIEDARHPA  205 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~--------------~~nV~~i~~D~~~~~  205 (264)
                      ..+++.+||..|||.|.....||+.   .-.|+++|+|+.+++.+.+.+..              ..+|+++++|+.++.
T Consensus        34 ~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~  110 (218)
T PF05724_consen   34 ALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELP  110 (218)
T ss_dssp             TTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGG
T ss_pred             CCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCC
Confidence            4788899999999999999999987   34899999999887776544432              126899999999876


Q ss_pred             hhcccCCCccEEE
Q 024665          206 KYRMLVGMVDVIF  218 (264)
Q Consensus       206 ~~~~~~~~fD~V~  218 (264)
                      +.  ..++||+|+
T Consensus       111 ~~--~~g~fD~iy  121 (218)
T PF05724_consen  111 PE--DVGKFDLIY  121 (218)
T ss_dssp             GS--CHHSEEEEE
T ss_pred             hh--hcCCceEEE
Confidence            42  235899997

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=98.04  E-value=2.4e-06  Score=74.10  Aligned_cols=73  Identities=29%  Similarity=0.304  Sum_probs=53.9

Q ss_pred             EEEEEcccCChHHHHHHHHhCCC--CEEEEEeCChHHHHHHHHHhhcCC-CeEEEEcCCCCch-hhcccCCCccEEEE
Q 024665          146 RVLYLGAASGTTVSHVSDIVGPN--GVVYAVEFSHRSGRDLVNMAKKRT-NVIPIIEDARHPA-KYRMLVGMVDVIFS  219 (264)
Q Consensus       146 ~VLDlG~G~G~~s~~la~~~~~~--g~V~avD~s~~~~~~l~~~a~~~~-nV~~i~~D~~~~~-~~~~~~~~fD~V~~  219 (264)
                      +||++|||.|.++..+.+.. ++  -+|||+|+|+++++-..+...... ++.....|++.+. ......+++|+|++
T Consensus        74 ~ilEvGCGvGNtvfPll~~~-~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~  150 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTS-PNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITL  150 (264)
T ss_pred             hheeeccCCCcccchhhhcC-CCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEE
Confidence            79999999999999998764 44  689999999988754444333222 7888888887765 33344568898765

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=97.97  E-value=1e-05  Score=78.22  Aligned_cols=89  Identities=24%  Similarity=0.238  Sum_probs=63.4

Q ss_pred             chHHHHHHHhccccc-CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCC
Q 024665          125 RSKLAAAVLGGVDNI-WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARH  203 (264)
Q Consensus       125 ~s~l~~~il~~l~~~-~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~  203 (264)
                      ++.-+-.++..-.++ .|++...||||||++|.|...+++.+...+.|++||+-|      +   +.-+|+..++.|++.
T Consensus        25 rsRsaFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p------i---kp~~~c~t~v~dItt   95 (780)
T KOG1098|consen   25 RSRSAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP------I---KPIPNCDTLVEDITT   95 (780)
T ss_pred             hHHHHHHHHHHHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee------c---ccCCccchhhhhhhH
Confidence            444444444332333 478999999999999999999999999889999999986      1   223478888888865


Q ss_pred             chhh---c--ccCCCccEEEEcCC
Q 024665          204 PAKY---R--MLVGMVDVIFSDVA  222 (264)
Q Consensus       204 ~~~~---~--~~~~~fD~V~~d~p  222 (264)
                      ....   +  +..-+.|+|+.|.+
T Consensus        96 d~cr~~l~k~l~t~~advVLhDga  119 (780)
T KOG1098|consen   96 DECRSKLRKILKTWKADVVLHDGA  119 (780)
T ss_pred             HHHHHHHHHHHHhCCCcEEeecCC
Confidence            3211   0  11226799999987

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.91  E-value=3.8e-06  Score=72.51  Aligned_cols=84  Identities=20%  Similarity=0.217  Sum_probs=53.7

Q ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCch
Q 024665          126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPA  205 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~  205 (264)
                      +.+.++++..++   ..+=.++||||||||-....|-+++.   ++++||+|+.|++...++-..   =+..+.|+..+.
T Consensus       111 P~~l~emI~~~~---~g~F~~~lDLGCGTGL~G~~lR~~a~---~ltGvDiS~nMl~kA~eKg~Y---D~L~~Aea~~Fl  181 (287)
T COG4976         111 PELLAEMIGKAD---LGPFRRMLDLGCGTGLTGEALRDMAD---RLTGVDISENMLAKAHEKGLY---DTLYVAEAVLFL  181 (287)
T ss_pred             HHHHHHHHHhcc---CCccceeeecccCcCcccHhHHHHHh---hccCCchhHHHHHHHHhccch---HHHHHHHHHHHh
Confidence            344444444433   55567999999999999999999865   899999999885443332211   123444544333


Q ss_pred             hhcccCCCccEEEE
Q 024665          206 KYRMLVGMVDVIFS  219 (264)
Q Consensus       206 ~~~~~~~~fD~V~~  219 (264)
                      .. ...+.||+|.+
T Consensus       182 ~~-~~~er~DLi~A  194 (287)
T COG4976         182 ED-LTQERFDLIVA  194 (287)
T ss_pred             hh-ccCCcccchhh
Confidence            11 12358999974

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.90  E-value=7e-05  Score=64.72  Aligned_cols=81  Identities=23%  Similarity=0.228  Sum_probs=63.8

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHH---HHHHHHhhcCCCeEEEEcCCCCchhh---cccCCCc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSG---RDLVNMAKKRTNVIPIIEDARHPAKY---RMLVGMV  214 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~---~~l~~~a~~~~nV~~i~~D~~~~~~~---~~~~~~f  214 (264)
                      +-..+++||||.=+|+.++.+|..+.+.|+|+++|+++..+   .++.+.+.....|.++++++.+....   ....+.|
T Consensus        71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf  150 (237)
T KOG1663|consen   71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF  150 (237)
T ss_pred             HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence            44557999999999999999999999999999999997553   44555555556899999999875421   1124589


Q ss_pred             cEEEEcC
Q 024665          215 DVIFSDV  221 (264)
Q Consensus       215 D~V~~d~  221 (264)
                      |.+|+|.
T Consensus       151 DfaFvDa  157 (237)
T KOG1663|consen  151 DFAFVDA  157 (237)
T ss_pred             eEEEEcc
Confidence            9999985

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.87  E-value=0.0001  Score=66.42  Aligned_cols=91  Identities=16%  Similarity=0.083  Sum_probs=57.8

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc--CC-CeEEEEcCCCCchhhcccCCCccEEE
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--RT-NVIPIIEDARHPAKYRMLVGMVDVIF  218 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~--~~-nV~~i~~D~~~~~~~~~~~~~fD~V~  218 (264)
                      -.|.+||||||++|+++..|+..  .+..|+++|-++....+....+..  .. ++..+-.-+.+++   . .+.||+||
T Consensus       114 L~gk~VLDIGC~nGY~~frM~~~--GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp---~-~~~FDtVF  187 (315)
T PF08003_consen  114 LKGKRVLDIGCNNGYYSFRMLGR--GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLP---N-LGAFDTVF  187 (315)
T ss_pred             cCCCEEEEecCCCcHHHHHHhhc--CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhcc---c-cCCcCEEE
Confidence            36889999999999999999987  466899999996553332222221  12 2333323334433   1 46899999


Q ss_pred             EcCC-----CchHHHHHHHHHhCCC
Q 024665          219 SDVA-----QPDQVCFLCLILFQPI  238 (264)
Q Consensus       219 ~d~p-----~~~~~~~~~~~~l~~~  238 (264)
                      +=-.     .|-.......+.++++
T Consensus       188 ~MGVLYHrr~Pl~~L~~Lk~~L~~g  212 (315)
T PF08003_consen  188 SMGVLYHRRSPLDHLKQLKDSLRPG  212 (315)
T ss_pred             EeeehhccCCHHHHHHHHHHhhCCC
Confidence            7432     5555555555666554

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=97.87  E-value=5.4e-05  Score=64.54  Aligned_cols=89  Identities=16%  Similarity=0.169  Sum_probs=62.7

Q ss_pred             EEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeE-EEEcCCCCchhhcccCCCccEEEEcCC
Q 024665          146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVI-PIIEDARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       146 ~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~-~i~~D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      .||++|||||.--...-..  |...|+.+|-++.|-+.+.+.+.++  .+++ ++.+|.++++..  .+.++|+|++...
T Consensus        79 ~vLEvgcGtG~Nfkfy~~~--p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l--~d~s~DtVV~Tlv  154 (252)
T KOG4300|consen   79 DVLEVGCGTGANFKFYPWK--PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQL--ADGSYDTVVCTLV  154 (252)
T ss_pred             ceEEecccCCCCcccccCC--CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCccc--ccCCeeeEEEEEE
Confidence            4799999999976666543  7789999999998855555544332  3788 999999987742  3569999986544


Q ss_pred             -----CchHHHHHHHHHhCCC
Q 024665          223 -----QPDQVCFLCLILFQPI  238 (264)
Q Consensus       223 -----~~~~~~~~~~~~l~~~  238 (264)
                           .|.+.....-..++|+
T Consensus       155 LCSve~~~k~L~e~~rlLRpg  175 (252)
T KOG4300|consen  155 LCSVEDPVKQLNEVRRLLRPG  175 (252)
T ss_pred             EeccCCHHHHHHHHHHhcCCC
Confidence                 4445544555555565

>KOG2730 consensus Methylase [General function prediction only]

Probab=97.84  E-value=7e-05  Score=64.32  Aligned_cols=93  Identities=14%  Similarity=0.089  Sum_probs=61.9

Q ss_pred             eCCcc-hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc-------CC
Q 024665          121 WNPFR-SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-------RT  192 (264)
Q Consensus       121 ~~p~~-s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~-------~~  192 (264)
                      |.-++ .+.+.++...+... + ..+.|+|..||.|.-++..|...   ..|++||+++.-    +.+++.       .+
T Consensus        73 wfsvTpe~ia~~iA~~v~~~-~-~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPik----Ia~AkhNaeiYGI~~  143 (263)
T KOG2730|consen   73 WFSVTPEKIAEHIANRVVAC-M-NAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVK----IACARHNAEVYGVPD  143 (263)
T ss_pred             eEEeccHHHHHHHHHHHHHh-c-CcchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHH----HHHHhccceeecCCc
Confidence            44344 34444444433321 2 45689999999999999999774   379999999733    233332       23


Q ss_pred             CeEEEEcCCCCchhhccc-CCCccEEEEcCC
Q 024665          193 NVIPIIEDARHPAKYRML-VGMVDVIFSDVA  222 (264)
Q Consensus       193 nV~~i~~D~~~~~~~~~~-~~~fD~V~~d~p  222 (264)
                      +|+||++|..+..+..+. ...+|+|+..+|
T Consensus       144 rItFI~GD~ld~~~~lq~~K~~~~~vf~spp  174 (263)
T KOG2730|consen  144 RITFICGDFLDLASKLKADKIKYDCVFLSPP  174 (263)
T ss_pred             eeEEEechHHHHHHHHhhhhheeeeeecCCC
Confidence            899999999886543222 235889998887

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=97.78  E-value=9.5e-05  Score=65.21  Aligned_cols=79  Identities=25%  Similarity=0.242  Sum_probs=57.1

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh------cCCCeEEEEcCCCCchhhcccCC-Ccc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK------KRTNVIPIIEDARHPAKYRMLVG-MVD  215 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~------~~~nV~~i~~D~~~~~~~~~~~~-~fD  215 (264)
                      .-.+||=||-|.|..+..+.+.- +..+|+.||+++.+++-+.+.-.      ..+++++++.|+..+...  ..+ +||
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~--~~~~~yD  152 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKE--TQEEKYD  152 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHT--SSST-EE
T ss_pred             CcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHh--ccCCccc
Confidence            56799999999999999998762 34689999999877544433221      235899999999886642  334 899


Q ss_pred             EEEEcCCCc
Q 024665          216 VIFSDVAQP  224 (264)
Q Consensus       216 ~V~~d~p~~  224 (264)
                      +|++|.+.|
T Consensus       153 vIi~D~~dp  161 (246)
T PF01564_consen  153 VIIVDLTDP  161 (246)
T ss_dssp             EEEEESSST
T ss_pred             EEEEeCCCC
Confidence            999998864

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=97.77  E-value=0.00013  Score=67.03  Aligned_cols=93  Identities=19%  Similarity=0.105  Sum_probs=57.8

Q ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh--------cC----CC
Q 024665          126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK--------KR----TN  193 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~--------~~----~n  193 (264)
                      +.|+...+..+.  .-.++.+|||||||-|....-+...  ....++++|++..+++++.+.-.        ..    -.
T Consensus        47 s~LI~~~~~~~~--~~~~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~  122 (331)
T PF03291_consen   47 SVLIQKYAKKVK--QNRPGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFI  122 (331)
T ss_dssp             HHHHHHHCHCCC--CTTTT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCE
T ss_pred             HHHHHHHHHhhh--ccCCCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccch
Confidence            456655554332  1128899999999999988887765  46699999999888766665541        11    25


Q ss_pred             eEEEEcCCCCchhhc-ccC--CCccEEEEcCC
Q 024665          194 VIPIIEDARHPAKYR-MLV--GMVDVIFSDVA  222 (264)
Q Consensus       194 V~~i~~D~~~~~~~~-~~~--~~fD~V~~d~p  222 (264)
                      ..++..|........ ...  .+||+|-+-.+
T Consensus       123 a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFa  154 (331)
T PF03291_consen  123 AEFIAADCFSESLREKLPPRSRKFDVVSCQFA  154 (331)
T ss_dssp             EEEEESTTCCSHHHCTSSSTTS-EEEEEEES-
T ss_pred             hheeccccccchhhhhccccCCCcceeehHHH
Confidence            678899987543211 122  38999988655

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=97.76  E-value=0.0001  Score=71.79  Aligned_cols=80  Identities=5%  Similarity=0.071  Sum_probs=53.5

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCC-------CCEEEEEeCChHHHHHHHHHhhcCC--CeEEEEcCCCCchhh--cccC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGP-------NGVVYAVEFSHRSGRDLVNMAKKRT--NVIPIIEDARHPAKY--RMLV  211 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~-------~g~V~avD~s~~~~~~l~~~a~~~~--nV~~i~~D~~~~~~~--~~~~  211 (264)
                      ...+|||.|||+|.+.+.+++.+..       .-.++++|+++.++..+........  .+.+++.|.......  ....
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~  110 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL  110 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence            4468999999999999999987631       2479999999877654433322222  455666664432110  0123


Q ss_pred             CCccEEEEcCC
Q 024665          212 GMVDVIFSDVA  222 (264)
Q Consensus       212 ~~fD~V~~d~p  222 (264)
                      +.||+|+.|||
T Consensus       111 ~~fD~IIgNPP  121 (524)
T TIGR02987       111 DLFDIVITNPP  121 (524)
T ss_pred             CcccEEEeCCC
Confidence            57999999999

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=97.72  E-value=0.00012  Score=63.84  Aligned_cols=81  Identities=25%  Similarity=0.229  Sum_probs=49.0

Q ss_pred             CCCCCC--EEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHH---HHHHHHHhhcC--------CCeEEEEcCCCCchh
Q 024665          140 WIKPGA--RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRS---GRDLVNMAKKR--------TNVIPIIEDARHPAK  206 (264)
Q Consensus       140 ~l~~g~--~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~---~~~l~~~a~~~--------~nV~~i~~D~~~~~~  206 (264)
                      .++++.  +|||+-||-|.-++.+|.. +  ++|+++|.|+-+   +++-++.+...        .+|+++++|+.+...
T Consensus        70 Glk~~~~~~VLDaTaGLG~Da~vlA~~-G--~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~  146 (234)
T PF04445_consen   70 GLKPGMRPSVLDATAGLGRDAFVLASL-G--CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR  146 (234)
T ss_dssp             T-BTTB---EEETT-TTSHHHHHHHHH-T----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC
T ss_pred             CCCCCCCCEEEECCCcchHHHHHHHcc-C--CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh
Confidence            467764  8999999999999999975 3  589999999754   33333333221        179999999998764


Q ss_pred             hcccCCCccEEEEcCCCch
Q 024665          207 YRMLVGMVDVIFSDVAQPD  225 (264)
Q Consensus       207 ~~~~~~~fD~V~~d~p~~~  225 (264)
                        ....+||+|.+||-.|.
T Consensus       147 --~~~~s~DVVY~DPMFp~  163 (234)
T PF04445_consen  147 --QPDNSFDVVYFDPMFPE  163 (234)
T ss_dssp             --CHSS--SEEEE--S---
T ss_pred             --hcCCCCCEEEECCCCCC
Confidence              34579999999998544

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=97.60  E-value=0.00012  Score=63.71  Aligned_cols=46  Identities=15%  Similarity=0.144  Sum_probs=37.8

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHH
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNM  187 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~  187 (264)
                      ......+||+||-+|.+|+++|..+++. .|.++||++..++.+.++
T Consensus        56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r-~iLGvDID~~LI~~Ark~  101 (288)
T KOG2899|consen   56 WFEPKQALDIGCNSGFLTLSIAKDFGPR-RILGVDIDPVLIQRARKE  101 (288)
T ss_pred             ccCcceeEeccCCcchhHHHHHHhhccc-eeeEeeccHHHHHHHHHh
Confidence            4455689999999999999999998754 699999999776555443

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.58  E-value=0.00025  Score=56.42  Aligned_cols=57  Identities=23%  Similarity=0.119  Sum_probs=45.0

Q ss_pred             EEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCC
Q 024665          146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARH  203 (264)
Q Consensus       146 ~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~  203 (264)
                      +|||+||+.|.++..++... +..+|+++|.++.+.+.+.+....+  .|+++++..+.+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence            48999999999999999874 5669999999998876666654433  368888777654

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=97.50  E-value=0.00082  Score=60.44  Aligned_cols=81  Identities=25%  Similarity=0.260  Sum_probs=61.9

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc------CCCeEEEEcCCCCchhhcccCCC
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK------RTNVIPIIEDARHPAKYRMLVGM  213 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~------~~nV~~i~~D~~~~~~~~~~~~~  213 (264)
                      +..| .+||-+|-|-|.++-.++++- +-.+++.||+++.+++-..+....      .+++++++.|+.++...  ...+
T Consensus        74 h~~p-k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~--~~~~  149 (282)
T COG0421          74 HPNP-KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRD--CEEK  149 (282)
T ss_pred             CCCC-CeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHh--CCCc
Confidence            4555 699999999999999999884 356899999999775544443321      24799999999886642  3348


Q ss_pred             ccEEEEcCCCc
Q 024665          214 VDVIFSDVAQP  224 (264)
Q Consensus       214 fD~V~~d~p~~  224 (264)
                      ||+|++|...|
T Consensus       150 fDvIi~D~tdp  160 (282)
T COG0421         150 FDVIIVDSTDP  160 (282)
T ss_pred             CCEEEEcCCCC
Confidence            99999998865

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=97.47  E-value=0.0001  Score=55.92  Aligned_cols=80  Identities=21%  Similarity=0.260  Sum_probs=28.7

Q ss_pred             EEEcccCChHHHHHHHHhCCCC--EEEEEeCChH--HHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCCC
Q 024665          148 LYLGAASGTTVSHVSDIVGPNG--VVYAVEFSHR--SGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       148 LDlG~G~G~~s~~la~~~~~~g--~V~avD~s~~--~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~  223 (264)
                      ||+|+..|..++.+++.+.+..  +++++|..+.  ..++.++......+++++++|..+..+. ....++|+|+.|...
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~-~~~~~~dli~iDg~H   79 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPS-LPDGPIDLIFIDGDH   79 (106)
T ss_dssp             --------------------------EEEESS------------GGG-BTEEEEES-THHHHHH-HHH--EEEEEEES--
T ss_pred             CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHH-cCCCCEEEEEECCCC
Confidence            6899999999999998887665  7999999973  2334444444556899999999775432 123799999999874


Q ss_pred             chHHH
Q 024665          224 PDQVC  228 (264)
Q Consensus       224 ~~~~~  228 (264)
                      ..+..
T Consensus        80 ~~~~~   84 (106)
T PF13578_consen   80 SYEAV   84 (106)
T ss_dssp             -HHHH
T ss_pred             CHHHH
Confidence            43333

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=97.46  E-value=0.00092  Score=59.04  Aligned_cols=83  Identities=22%  Similarity=0.157  Sum_probs=55.1

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEE-cC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS-DV  221 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~-d~  221 (264)
                      ...++||||||-|..|..|+..+.   +|||.|+|+.|...+.+    + +.+++..|  +..   ....+||+|.| |+
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr~rL~~----k-g~~vl~~~--~w~---~~~~~fDvIscLNv  160 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMRWRLSK----K-GFTVLDID--DWQ---QTDFKFDVISCLNV  160 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHHHHHHh----C-CCeEEehh--hhh---ccCCceEEEeehhh
Confidence            356899999999999999999986   79999999988433322    2 33333322  221   12358999985 33


Q ss_pred             C----CchHHHHHHHHHhCCC
Q 024665          222 A----QPDQVCFLCLILFQPI  238 (264)
Q Consensus       222 p----~~~~~~~~~~~~l~~~  238 (264)
                      -    .|........+++.|.
T Consensus       161 LDRc~~P~~LL~~i~~~l~p~  181 (265)
T PF05219_consen  161 LDRCDRPLTLLRDIRRALKPN  181 (265)
T ss_pred             hhccCCHHHHHHHHHHHhCCC
Confidence            3    4555555555666554

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=97.45  E-value=0.0021  Score=54.20  Aligned_cols=78  Identities=22%  Similarity=0.198  Sum_probs=55.6

Q ss_pred             EEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHH---HHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665          146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRS---GRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       146 ~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~---~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      +|+|+|+|.|.=++.+|-. .|..+|+-+|.+.+-   ++..+.... ..||++++..+.+.    .....||+|++-+-
T Consensus        51 ~~lDiGSGaGfPGipLaI~-~p~~~~~LvEs~~KK~~FL~~~~~~L~-L~nv~v~~~R~E~~----~~~~~fd~v~aRAv  124 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIA-RPDLQVTLVESVGKKVAFLKEVVRELG-LSNVEVINGRAEEP----EYRESFDVVTARAV  124 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT--SSEEEEES-HHHT----TTTT-EEEEEEESS
T ss_pred             eEEecCCCCCChhHHHHHh-CCCCcEEEEeCCchHHHHHHHHHHHhC-CCCEEEEEeeeccc----ccCCCccEEEeehh
Confidence            8999999999999999966 478899999999533   333333222 24899999999882    23479999999887


Q ss_pred             CchHHHH
Q 024665          223 QPDQVCF  229 (264)
Q Consensus       223 ~~~~~~~  229 (264)
                      .+-....
T Consensus       125 ~~l~~l~  131 (184)
T PF02527_consen  125 APLDKLL  131 (184)
T ss_dssp             SSHHHHH
T ss_pred             cCHHHHH
Confidence            6544333

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.40  E-value=0.001  Score=58.12  Aligned_cols=81  Identities=23%  Similarity=0.306  Sum_probs=46.8

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC-CCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~-~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      -.|.+||=||  -.-+++..+.+.+...+|+-+|++++++....+.+.+. .+|+.++.|++++.+. .+.++||+++.|
T Consensus        43 L~gk~il~lG--DDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~-~~~~~fD~f~TD  119 (243)
T PF01861_consen   43 LEGKRILFLG--DDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPE-ELRGKFDVFFTD  119 (243)
T ss_dssp             STT-EEEEES---TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---T-TTSS-BSEEEE-
T ss_pred             ccCCEEEEEc--CCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCH-HHhcCCCEEEeC
Confidence            3678898776  56666655556666779999999999987766666553 3799999999997653 456899999999


Q ss_pred             CCCch
Q 024665          221 VAQPD  225 (264)
Q Consensus       221 ~p~~~  225 (264)
                      ||...
T Consensus       120 PPyT~  124 (243)
T PF01861_consen  120 PPYTP  124 (243)
T ss_dssp             --SSH
T ss_pred             CCCCH
Confidence            99433

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.39  E-value=0.0024  Score=55.71  Aligned_cols=70  Identities=19%  Similarity=0.077  Sum_probs=51.5

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      .+.+..+|||||+|+|.++..+++.. |..+++.+|+ |.++    +.+....+|+++.+|+.+..     .. +|+|++
T Consensus        97 d~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~----~~~~~~~rv~~~~gd~f~~~-----P~-~D~~~l  164 (241)
T PF00891_consen   97 DFSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVI----EQAKEADRVEFVPGDFFDPL-----PV-ADVYLL  164 (241)
T ss_dssp             TTTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHH----CCHHHTTTEEEEES-TTTCC-----SS-ESEEEE
T ss_pred             cccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhh----hccccccccccccccHHhhh-----cc-ccceee
Confidence            46777899999999999999999885 7889999999 4343    22222669999999998533     23 999997


Q ss_pred             cC
Q 024665          220 DV  221 (264)
Q Consensus       220 d~  221 (264)
                      .-
T Consensus       165 ~~  166 (241)
T PF00891_consen  165 RH  166 (241)
T ss_dssp             ES
T ss_pred             eh
Confidence            43

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.38  E-value=0.0011  Score=53.22  Aligned_cols=75  Identities=17%  Similarity=0.190  Sum_probs=50.3

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHh---CCCCEEEEEeCChHHHHHHHHHhhc-----CCCeEEEEcCCCCchhhcccCC
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIV---GPNGVVYAVEFSHRSGRDLVNMAKK-----RTNVIPIIEDARHPAKYRMLVG  212 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~---~~~g~V~avD~s~~~~~~l~~~a~~-----~~nV~~i~~D~~~~~~~~~~~~  212 (264)
                      ..+...|+|+|||.|+++..|+..+   .+.-+|++||.++...+...+.+.+     ..+++++..+..+..    ...
T Consensus        23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~   98 (141)
T PF13679_consen   23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES----SSD   98 (141)
T ss_pred             cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc----ccC
Confidence            4677899999999999999999943   3567999999997664444443332     125666666554322    124


Q ss_pred             CccEEEE
Q 024665          213 MVDVIFS  219 (264)
Q Consensus       213 ~fD~V~~  219 (264)
                      ..++++.
T Consensus        99 ~~~~~vg  105 (141)
T PF13679_consen   99 PPDILVG  105 (141)
T ss_pred             CCeEEEE
Confidence            5566664

>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]

Probab=97.34  E-value=0.00065  Score=61.59  Aligned_cols=6  Identities=50%  Similarity=1.182  Sum_probs=2.4

Q ss_pred             CCCCCC
Q 024665           60 GGGMKG   65 (264)
Q Consensus        60 ~~~~~~   65 (264)
                      +|++.+
T Consensus       457 rg~y~~  462 (465)
T KOG3973|consen  457 RGGYRG  462 (465)
T ss_pred             CcccCC
Confidence            344433

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=97.32  E-value=0.0014  Score=58.74  Aligned_cols=71  Identities=18%  Similarity=0.123  Sum_probs=51.5

Q ss_pred             EEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCCC
Q 024665          146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       146 ~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~  223 (264)
                      +||||+||.|.+++-+.+. + -..|+++|+++.+.+.... |.  ++ .+++.|+.+..... ....+|+|+.++|+
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~-G-~~~v~a~e~~~~a~~~~~~-N~--~~-~~~~~Di~~~~~~~-~~~~~D~l~~gpPC   72 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKA-G-FEIVAANEIDKSAAETYEA-NF--PN-KLIEGDITKIDEKD-FIPDIDLLTGGFPC   72 (275)
T ss_pred             cEEEEccCcchHHHHHHHc-C-CEEEEEEeCCHHHHHHHHH-hC--CC-CCccCccccCchhh-cCCCCCEEEeCCCC
Confidence            6999999999999888765 2 3478999999877544333 22  12 27788988876421 14579999999994

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=97.31  E-value=0.00042  Score=62.93  Aligned_cols=94  Identities=17%  Similarity=0.141  Sum_probs=61.4

Q ss_pred             chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh-cCCCeEEEEcCCCC
Q 024665          125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARH  203 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~-~~~nV~~i~~D~~~  203 (264)
                      .+-|..+++..|.   ++|+..+||.-.|.|..|..+++...+ ++|+|+|.++.+++...+... ...++++++.+..+
T Consensus         5 ~PVll~Evl~~L~---~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~   80 (310)
T PF01795_consen    5 IPVLLKEVLEALN---PKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSN   80 (310)
T ss_dssp             --TTHHHHHHHHT-----TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGG
T ss_pred             ecccHHHHHHhhC---cCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHH
Confidence            3456666766666   899999999999999999999998765 999999999977433322221 12489999999988


Q ss_pred             chhhcc---cCCCccEEEEcCC
Q 024665          204 PAKYRM---LVGMVDVIFSDVA  222 (264)
Q Consensus       204 ~~~~~~---~~~~fD~V~~d~p  222 (264)
                      +..+-.   ....+|.|++|.-
T Consensus        81 l~~~l~~~~~~~~~dgiL~DLG  102 (310)
T PF01795_consen   81 LDEYLKELNGINKVDGILFDLG  102 (310)
T ss_dssp             HHHHHHHTTTTS-EEEEEEE-S
T ss_pred             HHHHHHHccCCCccCEEEEccc
Confidence            765421   2358999999966

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=97.29  E-value=0.003  Score=56.67  Aligned_cols=78  Identities=12%  Similarity=-0.010  Sum_probs=58.0

Q ss_pred             CEEEEEcccCChHHHHHHHHhCC-CCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          145 ARVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~~~-~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      -+|||++||.|...+.+...... .-.|.-.|+|+..++.-.++...   ..-++|.++|+.+...+..+....|++++.
T Consensus       137 vrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iVs  216 (311)
T PF12147_consen  137 VRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIVS  216 (311)
T ss_pred             eEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEEe
Confidence            48999999999999988877643 25899999997654443333333   324599999999988776666778988865


Q ss_pred             CC
Q 024665          221 VA  222 (264)
Q Consensus       221 ~p  222 (264)
                      -.
T Consensus       217 GL  218 (311)
T PF12147_consen  217 GL  218 (311)
T ss_pred             cc
Confidence            44

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=97.23  E-value=0.0017  Score=58.96  Aligned_cols=110  Identities=14%  Similarity=0.142  Sum_probs=69.3

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh----cCC----CeEEEEcCCCCchhhcc--
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK----KRT----NVIPIIEDARHPAKYRM--  209 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~----~~~----nV~~i~~D~~~~~~~~~--  209 (264)
                      ..++++.|||||||-|...+-.-..  .-+.++++||++-++.++.....    ...    .+.++.+|.........  
T Consensus       114 y~~~~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e  191 (389)
T KOG1975|consen  114 YTKRGDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLE  191 (389)
T ss_pred             HhccccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhcc
Confidence            3688999999999999988877644  35689999999766544433221    111    57899999876432111  


Q ss_pred             -cCCCccEEEEcCC------CchHHHHHH---HHHhCCC-----cHHHHHHHHHHhh
Q 024665          210 -LVGMVDVIFSDVA------QPDQVCFLC---LILFQPI-----VINNLQSVNNETK  251 (264)
Q Consensus       210 -~~~~fD~V~~d~p------~~~~~~~~~---~~~l~~~-----~~~~l~~~~~~Lk  251 (264)
                       ...+||+|-|-..      ...++++..   ...|+|+     ++.....+++.|+
T Consensus       192 ~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr  248 (389)
T KOG1975|consen  192 FKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLR  248 (389)
T ss_pred             CCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHH
Confidence             1234999987655      233444443   3445666     5555555555555

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.20  E-value=0.0053  Score=53.04  Aligned_cols=75  Identities=23%  Similarity=0.143  Sum_probs=55.5

Q ss_pred             CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc--CCCeEEEEcCCCCchhhcccCCC-ccEEEEc
Q 024665          144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--RTNVIPIIEDARHPAKYRMLVGM-VDVIFSD  220 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~--~~nV~~i~~D~~~~~~~~~~~~~-fD~V~~d  220 (264)
                      ..+|+|+|+|.|.=++.+| ++.|+.+|+-+|...+-+.-+......  .+|++++++.+.++...    .. ||+|++-
T Consensus        68 ~~~~~DIGSGaGfPGipLA-I~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~----~~~~D~vtsR  142 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLA-IAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQE----KKQYDVVTSR  142 (215)
T ss_pred             CCEEEEeCCCCCCchhhHH-HhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccc----cccCcEEEee
Confidence            5899999999999999999 556888899999984332232222222  34899999999887631    23 9999987


Q ss_pred             CCC
Q 024665          221 VAQ  223 (264)
Q Consensus       221 ~p~  223 (264)
                      +-.
T Consensus       143 Ava  145 (215)
T COG0357         143 AVA  145 (215)
T ss_pred             hcc
Confidence            663

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.20  E-value=0.0034  Score=56.56  Aligned_cols=95  Identities=15%  Similarity=0.090  Sum_probs=75.3

Q ss_pred             chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCC
Q 024665          125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARH  203 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~  203 (264)
                      .+-|..+++..|.   ++|+...||.--|-|..|..+.+...+.++++++|.++.+++...+.... ..++++++....+
T Consensus         8 ipVLl~E~i~~L~---~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~   84 (314)
T COG0275           8 IPVLLNEVVELLA---PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN   84 (314)
T ss_pred             cchHHHHHHHhcc---cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence            4667777776666   99999999999999999999999988888999999999886555554433 3489999999887


Q ss_pred             chhh--cccCCCccEEEEcCC
Q 024665          204 PAKY--RMLVGMVDVIFSDVA  222 (264)
Q Consensus       204 ~~~~--~~~~~~fD~V~~d~p  222 (264)
                      +..+  .....++|-|++|.-
T Consensus        85 l~~~l~~~~i~~vDGiL~DLG  105 (314)
T COG0275          85 LAEALKELGIGKVDGILLDLG  105 (314)
T ss_pred             HHHHHHhcCCCceeEEEEecc
Confidence            6543  122458999999865

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.10  E-value=0.00098  Score=56.44  Aligned_cols=71  Identities=18%  Similarity=0.214  Sum_probs=53.6

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC--CeEEEEcCCCCchhhcccCCCccEEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT--NVIPIIEDARHPAKYRMLVGMVDVIF  218 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~--nV~~i~~D~~~~~~~~~~~~~fD~V~  218 (264)
                      .-.+.+|||+|+|+|..++..+..  .+..|++.|+.+... +++..|.+..  +|.++..|... .     +..||+|+
T Consensus        77 tVrgkrVLd~gagsgLvaIAaa~a--GA~~v~a~d~~P~~~-~ai~lNa~angv~i~~~~~d~~g-~-----~~~~Dl~L  147 (218)
T COG3897          77 TVRGKRVLDLGAGSGLVAIAAARA--GAAEVVAADIDPWLE-QAIRLNAAANGVSILFTHADLIG-S-----PPAFDLLL  147 (218)
T ss_pred             ccccceeeecccccChHHHHHHHh--hhHHHHhcCCChHHH-HHhhcchhhccceeEEeeccccC-C-----CcceeEEE
Confidence            446889999999999999999877  466899999996553 4455554332  78888888765 2     36899998


Q ss_pred             Ec
Q 024665          219 SD  220 (264)
Q Consensus       219 ~d  220 (264)
                      +.
T Consensus       148 ag  149 (218)
T COG3897         148 AG  149 (218)
T ss_pred             ee
Confidence            63

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=97.06  E-value=0.0022  Score=54.86  Aligned_cols=75  Identities=21%  Similarity=0.295  Sum_probs=49.5

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHH---HHHHHHHhhcCCCe-EEEEcCCCCch-hhc----ccCCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRS---GRDLVNMAKKRTNV-IPIIEDARHPA-KYR----MLVGM  213 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~---~~~l~~~a~~~~nV-~~i~~D~~~~~-~~~----~~~~~  213 (264)
                      .+.+||||+||||--+.++|..+ |.-.-.-.|.++..   ++.-+..+. .+|+ .++..|+.+.. +..    .....
T Consensus        25 ~~~~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~~~~~-~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~  102 (204)
T PF06080_consen   25 SGTRVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWIAEAG-LPNVRPPLALDVSAPPWPWELPAPLSPES  102 (204)
T ss_pred             cCceEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHHHhcC-CcccCCCeEeecCCCCCccccccccCCCC
Confidence            33469999999999999999997 56677777887543   333233332 2343 56788887752 221    12358


Q ss_pred             ccEEEE
Q 024665          214 VDVIFS  219 (264)
Q Consensus       214 fD~V~~  219 (264)
                      ||+|++
T Consensus       103 ~D~i~~  108 (204)
T PF06080_consen  103 FDAIFC  108 (204)
T ss_pred             cceeee
Confidence            999996

The function of this family is unknown.

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=97.05  E-value=0.00092  Score=56.58  Aligned_cols=76  Identities=29%  Similarity=0.265  Sum_probs=50.8

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHH------HHHHHHHh--hcCCCeEEEEcCCCCchhhcccC
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRS------GRDLVNMA--KKRTNVIPIIEDARHPAKYRMLV  211 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~------~~~l~~~a--~~~~nV~~i~~D~~~~~~~~~~~  211 (264)
                      .++|+++|+|+-.|.|+||..++..+++++.||++--.+-.      ...+...+  ....|++++-.+...+.    ..
T Consensus        45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~----~p  120 (238)
T COG4798          45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG----AP  120 (238)
T ss_pred             ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC----CC
Confidence            49999999999999999999999999999999998543210      01111111  12237777666654433    23


Q ss_pred             CCccEEEE
Q 024665          212 GMVDVIFS  219 (264)
Q Consensus       212 ~~fD~V~~  219 (264)
                      +..|+++.
T Consensus       121 q~~d~~~~  128 (238)
T COG4798         121 QKLDLVPT  128 (238)
T ss_pred             Cccccccc
Confidence            45666654

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=96.88  E-value=0.00061  Score=62.20  Aligned_cols=79  Identities=18%  Similarity=0.188  Sum_probs=59.2

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHH------HHHHHhhcC----C-CeEEEEcCCCCchhhc
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGR------DLVNMAKKR----T-NVIPIIEDARHPAKYR  208 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~------~l~~~a~~~----~-nV~~i~~D~~~~~~~~  208 (264)
                      -++||+.|+|-..|||++...+|..   .+.|++.||+-++++      ..+..|-+.    + -+.++.+|..+++-. 
T Consensus       205 mv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~r-  280 (421)
T KOG2671|consen  205 MVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLR-  280 (421)
T ss_pred             ccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchh-
Confidence            4899999999999999999999976   358999999966654      122222211    1 477888998886532 


Q ss_pred             ccCCCccEEEEcCCC
Q 024665          209 MLVGMVDVIFSDVAQ  223 (264)
Q Consensus       209 ~~~~~fD~V~~d~p~  223 (264)
                       ....||+|+||||.
T Consensus       281 -sn~~fDaIvcDPPY  294 (421)
T KOG2671|consen  281 -SNLKFDAIVCDPPY  294 (421)
T ss_pred             -hcceeeEEEeCCCc
Confidence             24589999999993

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=96.88  E-value=0.0037  Score=60.54  Aligned_cols=82  Identities=13%  Similarity=0.111  Sum_probs=56.5

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCC---CCEEEEEeCChHHHHHHHHHhhcCC----CeEEEEcCCCCchhh--cccC
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGP---NGVVYAVEFSHRSGRDLVNMAKKRT----NVIPIIEDARHPAKY--RMLV  211 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~---~g~V~avD~s~~~~~~l~~~a~~~~----nV~~i~~D~~~~~~~--~~~~  211 (264)
                      +++..+|+|-+||||.+.+..++.+..   ...+|+.|+++... .+..++....    ++...++|...-+..  ....
T Consensus       184 ~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~-~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~  262 (489)
T COG0286         184 PEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTY-RLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDK  262 (489)
T ss_pred             CCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHH-HHHHHHHHHhCCCccccccccccccCCcccccCCc
Confidence            578889999999999999999988863   36799999996553 3334443322    345555655443322  1133


Q ss_pred             CCccEEEEcCCC
Q 024665          212 GMVDVIFSDVAQ  223 (264)
Q Consensus       212 ~~fD~V~~d~p~  223 (264)
                      ..||+|++|||.
T Consensus       263 ~~~D~viaNPPf  274 (489)
T COG0286         263 GKFDFVIANPPF  274 (489)
T ss_pred             cceeEEEeCCCC
Confidence            579999999994

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=96.84  E-value=0.0061  Score=55.79  Aligned_cols=65  Identities=12%  Similarity=0.133  Sum_probs=50.2

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCC---CCEEEEEeCChHHHHHHHHHhh-cC-C--CeEEEEcCCCCch
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGP---NGVVYAVEFSHRSGRDLVNMAK-KR-T--NVIPIIEDARHPA  205 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~---~g~V~avD~s~~~~~~l~~~a~-~~-~--nV~~i~~D~~~~~  205 (264)
                      +.++..|+|+|||++.++..|.+.+.+   ....++||+|..+++...+... .. +  .|..+++|..+..
T Consensus        74 i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l  145 (319)
T TIGR03439        74 IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGL  145 (319)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHH
Confidence            567889999999999999988877743   3469999999888777666655 22 3  4566999998754

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PRK00536 speE spermidine synthase; Provisional

Probab=96.77  E-value=0.036  Score=49.41  Aligned_cols=86  Identities=9%  Similarity=-0.041  Sum_probs=60.7

Q ss_pred             CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHH------hhcCCCeEEEEcCCCCchhhcccCCCccEE
Q 024665          144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNM------AKKRTNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~------a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      -.+||=+|-|-|...-.+++.  +. +|+-||+++++++-..+.      +-..++++++.. +.+     ...++||+|
T Consensus        73 pk~VLIiGGGDGg~~REvLkh--~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~-----~~~~~fDVI  143 (262)
T PRK00536         73 LKEVLIVDGFDLELAHQLFKY--DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD-----LDIKKYDLI  143 (262)
T ss_pred             CCeEEEEcCCchHHHHHHHCc--CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh-----ccCCcCCEE
Confidence            379999999999999999988  44 999999998776444432      223357777762 111     112689999


Q ss_pred             EEcCCCchHHHHHHHHHhCCC
Q 024665          218 FSDVAQPDQVCFLCLILFQPI  238 (264)
Q Consensus       218 ~~d~p~~~~~~~~~~~~l~~~  238 (264)
                      ++|...+........++|.+.
T Consensus       144 IvDs~~~~~fy~~~~~~L~~~  164 (262)
T PRK00536        144 ICLQEPDIHKIDGLKRMLKED  164 (262)
T ss_pred             EEcCCCChHHHHHHHHhcCCC
Confidence            999665545445566777776

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=96.74  E-value=0.008  Score=54.41  Aligned_cols=78  Identities=10%  Similarity=0.003  Sum_probs=40.8

Q ss_pred             CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHH---HHHHHHh-hcCCCeEEEEcCCCC-ch-hhcccCCCccEE
Q 024665          144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSG---RDLVNMA-KKRTNVIPIIEDARH-PA-KYRMLVGMVDVI  217 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~---~~l~~~a-~~~~nV~~i~~D~~~-~~-~~~~~~~~fD~V  217 (264)
                      .-++||+|||.-.+--.|+.... .-+++|.|+++.++   +++++.| ....+|+++...-.. +. ......+.||+.
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft  181 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT  181 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred             ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence            45899999998876544444433 56899999998664   4445555 444578887664322 11 111123589999


Q ss_pred             EEcCC
Q 024665          218 FSDVA  222 (264)
Q Consensus       218 ~~d~p  222 (264)
                      +||||
T Consensus       182 mCNPP  186 (299)
T PF05971_consen  182 MCNPP  186 (299)
T ss_dssp             EE---
T ss_pred             ecCCc
Confidence            99999

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=96.67  E-value=0.0014  Score=61.27  Aligned_cols=77  Identities=23%  Similarity=0.173  Sum_probs=59.8

Q ss_pred             eCCcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---C-CeEE
Q 024665          121 WNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---T-NVIP  196 (264)
Q Consensus       121 ~~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~-nV~~  196 (264)
                      |+++-+..-..+..     ..+|++.|.|++||.|-+++.++..   .+.|||.|.++++++-+....+++   + +|+.
T Consensus       232 WnsRL~~Eherlsg-----~fk~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei  303 (495)
T KOG2078|consen  232 WNSRLSHEHERLSG-----LFKPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEI  303 (495)
T ss_pred             eeccchhHHHHHhh-----ccCCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheee
Confidence            87554444444432     3689999999999999999999976   489999999999987776665544   2 6999


Q ss_pred             EEcCCCCch
Q 024665          197 IIEDARHPA  205 (264)
Q Consensus       197 i~~D~~~~~  205 (264)
                      ...|+.++.
T Consensus       304 ~Nmda~~Fl  312 (495)
T KOG2078|consen  304 FNMDAKDFL  312 (495)
T ss_pred             ecccHHHHh
Confidence            999997765

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=96.67  E-value=0.0015  Score=58.57  Aligned_cols=91  Identities=18%  Similarity=0.083  Sum_probs=61.0

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC---CeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT---NVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~---nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      .++.|+||.||.|++|+...-.. .+..|+|+|.+|.+++.+++.+..+.   ...++.+|-+.+.    +...+|.|.+
T Consensus       194 ~~eviVDLYAGIGYFTlpflV~a-gAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~----~~~~AdrVnL  268 (351)
T KOG1227|consen  194 DGEVIVDLYAGIGYFTLPFLVTA-GAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPK----PRLRADRVNL  268 (351)
T ss_pred             ccchhhhhhcccceEEeehhhcc-CccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccC----ccccchheee
Confidence            45899999999999999554343 46789999999988877766665442   3455667766643    3467898887


Q ss_pred             cCC-CchHHHHHHHHHhCCC
Q 024665          220 DVA-QPDQVCFLCLILFQPI  238 (264)
Q Consensus       220 d~p-~~~~~~~~~~~~l~~~  238 (264)
                      -.. ...+.-..+..+++|.
T Consensus       269 GLlPSse~~W~~A~k~Lk~e  288 (351)
T KOG1227|consen  269 GLLPSSEQGWPTAIKALKPE  288 (351)
T ss_pred             ccccccccchHHHHHHhhhc
Confidence            654 3333333444444443

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=96.62  E-value=0.009  Score=53.92  Aligned_cols=73  Identities=18%  Similarity=0.154  Sum_probs=48.0

Q ss_pred             CEEEEEcccCCh----HHHHHHHHhCC---CCEEEEEeCChHHHHHHHHH------------------------------
Q 024665          145 ARVLYLGAASGT----TVSHVSDIVGP---NGVVYAVEFSHRSGRDLVNM------------------------------  187 (264)
Q Consensus       145 ~~VLDlG~G~G~----~s~~la~~~~~---~g~V~avD~s~~~~~~l~~~------------------------------  187 (264)
                      -+||..||+||-    +++.+.+....   .-+|+|+|+|+.+++.+.+-                              
T Consensus       117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~  196 (287)
T PRK10611        117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV  196 (287)
T ss_pred             EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence            589999999997    44444443321   35799999998775544321                              


Q ss_pred             ---hhcCCCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          188 ---AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       188 ---a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                         ...+..|+|.+.|+.+.+ + ...+.||+|+|
T Consensus       197 ~v~~~lr~~V~F~~~NL~~~~-~-~~~~~fD~I~c  229 (287)
T PRK10611        197 RVRQELANYVDFQQLNLLAKQ-W-AVPGPFDAIFC  229 (287)
T ss_pred             EEChHHHccCEEEcccCCCCC-C-ccCCCcceeeH
Confidence               001136888899987743 1 12468999998

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=96.56  E-value=0.012  Score=52.96  Aligned_cols=69  Identities=19%  Similarity=0.126  Sum_probs=48.3

Q ss_pred             EEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665          146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       146 ~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      +|+||+||.|.+++-+.+. + --.|.|+|+++.+.+....+..     .+++.|+++........ .+|+++.-+|
T Consensus         2 ~~~dlFsG~Gg~~~g~~~a-g-~~~~~a~e~~~~a~~~y~~N~~-----~~~~~Di~~~~~~~l~~-~~D~l~ggpP   70 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQA-G-FEVVWAVEIDPDACETYKANFP-----EVICGDITEIDPSDLPK-DVDLLIGGPP   70 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHT-T-EEEEEEEESSHHHHHHHHHHHT-----EEEESHGGGCHHHHHHH-T-SEEEEE--
T ss_pred             cEEEEccCccHHHHHHHhc-C-cEEEEEeecCHHHHHhhhhccc-----ccccccccccccccccc-cceEEEeccC
Confidence            7999999999999988865 2 2379999999876544333222     89999999876542222 6999999999

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=96.53  E-value=0.0038  Score=53.52  Aligned_cols=81  Identities=17%  Similarity=0.288  Sum_probs=45.3

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHh---CCCCEEEEEeCChHH-HHHHHHHhhcCCCeEEEEcCCCCchhhccc---C--
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIV---GPNGVVYAVEFSHRS-GRDLVNMAKKRTNVIPIIEDARHPAKYRML---V--  211 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~---~~~g~V~avD~s~~~-~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~---~--  211 (264)
                      ++| +.|+++|...|..++.+|+.+   ++.++|++||++.+. .+..++.....++|+++++|..++......   .  
T Consensus        31 ~kP-d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~  109 (206)
T PF04989_consen   31 LKP-DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASP  109 (206)
T ss_dssp             H---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS---
T ss_pred             hCC-CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhcc
Confidence            566 589999999999888777544   467899999997322 112222222336999999999987643221   1  


Q ss_pred             CCccEEEEcCC
Q 024665          212 GMVDVIFSDVA  222 (264)
Q Consensus       212 ~~fD~V~~d~p  222 (264)
                      ....+|+.|..
T Consensus       110 ~~~vlVilDs~  120 (206)
T PF04989_consen  110 PHPVLVILDSS  120 (206)
T ss_dssp             -SSEEEEESS-
T ss_pred             CCceEEEECCC
Confidence            24558888877

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=96.50  E-value=0.0085  Score=49.14  Aligned_cols=64  Identities=11%  Similarity=-0.061  Sum_probs=43.0

Q ss_pred             EEEeCChHHHHHHHHHhhc-----CCCeEEEEcCCCCchhhcccCCCccEEEEcCC-----CchHHHHHHHHHhCCC
Q 024665          172 YAVEFSHRSGRDLVNMAKK-----RTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA-----QPDQVCFLCLILFQPI  238 (264)
Q Consensus       172 ~avD~s~~~~~~l~~~a~~-----~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p-----~~~~~~~~~~~~l~~~  238 (264)
                      +++|+|+.|++...+....     ..||+++++|+.+++   ...++||+|++...     .+.+......+.++|+
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpG   74 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLP---FDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPG   74 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCC---CCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcC
Confidence            4799999997665443321     137999999998865   24568999987643     3444555555566665

>PTZ00146 fibrillarin; Provisional

Probab=96.47  E-value=0.007  Score=54.64  Aligned_cols=13  Identities=31%  Similarity=0.343  Sum_probs=7.4

Q ss_pred             CeEEEEcCCCCch
Q 024665          193 NVIPIIEDARHPA  205 (264)
Q Consensus       193 nV~~i~~D~~~~~  205 (264)
                      .+.++..|+.++.
T Consensus       202 ~vDvV~~Dva~pd  214 (293)
T PTZ00146        202 MVDVIFADVAQPD  214 (293)
T ss_pred             CCCEEEEeCCCcc
Confidence            4566666665443

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=96.45  E-value=0.015  Score=52.10  Aligned_cols=39  Identities=18%  Similarity=0.089  Sum_probs=33.4

Q ss_pred             CEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHH
Q 024665          145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRD  183 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~  183 (264)
                      .+|||+|||+|+-+..+.+.+....++++||.|+.|.+.
T Consensus        35 ~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l   73 (274)
T PF09243_consen   35 RSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLEL   73 (274)
T ss_pred             ceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHH
Confidence            589999999999999998888756689999999877543

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=96.30  E-value=0.0084  Score=48.30  Aligned_cols=93  Identities=17%  Similarity=0.226  Sum_probs=53.6

Q ss_pred             EEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcccCC-CccEEEEcCC-----------Cc---hHHHHHH
Q 024665          170 VVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVG-MVDVIFSDVA-----------QP---DQVCFLC  231 (264)
Q Consensus       170 ~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~~~-~fD~V~~d~p-----------~~---~~~~~~~  231 (264)
                      +|||+|+.+.+++...+....   ..+|++++.+-.++..+  +.+ ++|+|+.|.-           .+   -.+...+
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~--i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~a   78 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEY--IPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAA   78 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT----S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhh--CccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHH
Confidence            699999998776544443333   24799999998887765  344 8999999854           12   2334444


Q ss_pred             HHHhCCC----------------cHHHHHHHHHHhhcchhhhhhhhhcC
Q 024665          232 LILFQPI----------------VINNLQSVNNETKGGIFEFLFSLFLN  264 (264)
Q Consensus       232 ~~~l~~~----------------~~~~l~~~~~~Lk~g~f~~l~~~~~~  264 (264)
                      +..+.+.                ..+.+.+.+..|....|.++.+.|+|
T Consensus        79 l~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~~~N  127 (140)
T PF06962_consen   79 LELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQFIN  127 (140)
T ss_dssp             HHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEEESS
T ss_pred             HHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEEccC
Confidence            4444443                22334444444555667776666665

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=96.23  E-value=0.021  Score=49.01  Aligned_cols=72  Identities=15%  Similarity=0.055  Sum_probs=45.8

Q ss_pred             EEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHh---hcCCCeEEEEcCCCCchhhcccCCCccEEE-EcCC
Q 024665          147 VLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA---KKRTNVIPIIEDARHPAKYRMLVGMVDVIF-SDVA  222 (264)
Q Consensus       147 VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a---~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~-~d~p  222 (264)
                      |.|+||=-|++.+.|.+. +...+|+|+|+++..++.+.+..   ....+|+++.+|..+..+   ..+.+|+|+ +-|-
T Consensus         1 vaDIGtDHgyLpi~L~~~-~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~---~~e~~d~ivIAGMG   76 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKN-GKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLK---PGEDVDTIVIAGMG   76 (205)
T ss_dssp             EEEET-STTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG-----GGG---EEEEEEE-
T ss_pred             CceeccchhHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccC---CCCCCCEEEEecCC
Confidence            789999999999999987 44557999999976654444433   334489999999776432   112366665 5444

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=96.22  E-value=0.015  Score=53.75  Aligned_cols=81  Identities=20%  Similarity=0.301  Sum_probs=61.0

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCC-CCEEEEEeCChHHHHHHHH------Hhh---cCCCeEEEEcCCCCchhhccc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVN------MAK---KRTNVIPIIEDARHPAKYRML  210 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~-~g~V~avD~s~~~~~~l~~------~a~---~~~nV~~i~~D~~~~~~~~~~  210 (264)
                      ++.-.+||-+|-|-|--.-.+.+.  | -.+|+-||++|+|++-...      .|.   ..++++++..|+.+..+.  .
T Consensus       287 ~~~a~~vLvlGGGDGLAlRellky--P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~--a  362 (508)
T COG4262         287 VRGARSVLVLGGGDGLALRELLKY--PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRT--A  362 (508)
T ss_pred             ccccceEEEEcCCchHHHHHHHhC--CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHh--h
Confidence            456678999999999888888876  5 5799999999988643221      111   124899999999887642  3


Q ss_pred             CCCccEEEEcCCCch
Q 024665          211 VGMVDVIFSDVAQPD  225 (264)
Q Consensus       211 ~~~fD~V~~d~p~~~  225 (264)
                      .++||+|++|.|.|.
T Consensus       363 ~~~fD~vIVDl~DP~  377 (508)
T COG4262         363 ADMFDVVIVDLPDPS  377 (508)
T ss_pred             cccccEEEEeCCCCC
Confidence            459999999999654

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.20  E-value=0.013  Score=50.04  Aligned_cols=75  Identities=16%  Similarity=0.140  Sum_probs=41.5

Q ss_pred             CCCEEEEEcccCCh----HHHHHHHHhC---C-CCEEEEEeCChHHHHHHHHH---------------hh----------
Q 024665          143 PGARVLYLGAASGT----TVSHVSDIVG---P-NGVVYAVEFSHRSGRDLVNM---------------AK----------  189 (264)
Q Consensus       143 ~g~~VLDlG~G~G~----~s~~la~~~~---~-~g~V~avD~s~~~~~~l~~~---------------a~----------  189 (264)
                      +--+||.+||+||-    +++.+.+...   + .-+|+|.|+|+.+++.+.+-               .+          
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            34589999999997    4444445221   1 35899999998776554310               00          


Q ss_pred             -----cCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          190 -----KRTNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       190 -----~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                           .+.+|.|.+.|+.+..   ...+.||+|+|.
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~---~~~~~fD~I~CR  143 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPD---PPFGRFDLIFCR  143 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S---------EEEEEE-
T ss_pred             eEChHHcCceEEEecccCCCC---cccCCccEEEec
Confidence                 1127999999998822   134789999985

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=96.18  E-value=0.034  Score=47.93  Aligned_cols=79  Identities=13%  Similarity=0.056  Sum_probs=43.9

Q ss_pred             CCEEEEEcccCChHHHHHHHHhCCC-CEEEEEeCChHHHHHHHHH-----------------------------------
Q 024665          144 GARVLYLGAASGTTVSHVSDIVGPN-GVVYAVEFSHRSGRDLVNM-----------------------------------  187 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~~~-g~V~avD~s~~~~~~l~~~-----------------------------------  187 (264)
                      .-+++|-|||+|++...+.-+-.+. ..|+|-|+++.+++-+.++                                   
T Consensus        52 p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA  131 (246)
T PF11599_consen   52 PYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALESA  131 (246)
T ss_dssp             -EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred             CeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence            3589999999999999888764433 4699999997664221110                                   


Q ss_pred             -------hhc--CCCeEEEEcCCCCchhhcc--cCCCccEEEEcCC
Q 024665          188 -------AKK--RTNVIPIIEDARHPAKYRM--LVGMVDVIFSDVA  222 (264)
Q Consensus       188 -------a~~--~~nV~~i~~D~~~~~~~~~--~~~~fD~V~~d~p  222 (264)
                             +..  .....+.+.|++++.....  .....|+|+.|.|
T Consensus       132 ~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlP  177 (246)
T PF11599_consen  132 DRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLP  177 (246)
T ss_dssp             HHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--
T ss_pred             HHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCC
Confidence                   000  0146788999998654211  2235799999999

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=96.16  E-value=0.03  Score=50.04  Aligned_cols=74  Identities=14%  Similarity=0.121  Sum_probs=49.9

Q ss_pred             CCEEEEEcccCCh----HHHHHHHHhCC----CCEEEEEeCChHHHHHHHH-----Hhh---------------------
Q 024665          144 GARVLYLGAASGT----TVSHVSDIVGP----NGVVYAVEFSHRSGRDLVN-----MAK---------------------  189 (264)
Q Consensus       144 g~~VLDlG~G~G~----~s~~la~~~~~----~g~V~avD~s~~~~~~l~~-----~a~---------------------  189 (264)
                      --+||-++|+||-    +++.|++....    ..+|+|.|+|..+++.+..     .+.                     
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y  176 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY  176 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence            3489999999996    55556666532    5689999999776543321     000                     


Q ss_pred             -----cCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          190 -----KRTNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       190 -----~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                           .+.+|.|-..|+.+...   ..+.||+|+|-
T Consensus       177 ~v~~~ir~~V~F~~~NLl~~~~---~~~~fD~IfCR  209 (268)
T COG1352         177 RVKEELRKMVRFRRHNLLDDSP---FLGKFDLIFCR  209 (268)
T ss_pred             EEChHHhcccEEeecCCCCCcc---ccCCCCEEEEc
Confidence                 11268888888877542   34689999984

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=96.06  E-value=0.023  Score=51.91  Aligned_cols=68  Identities=15%  Similarity=0.090  Sum_probs=48.0

Q ss_pred             EEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665          147 VLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       147 VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      ||||.||.|.+++-+.+. + --.|.++|+++.+.+.... |.  ++ ++++.|+.++...  ....+|+++..+|
T Consensus         1 vidLF~G~GG~~~Gl~~a-G-~~~~~a~e~~~~a~~ty~~-N~--~~-~~~~~Di~~~~~~--~~~~~dvl~gg~P   68 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQA-G-FKCVFASEIDKYAQKTYEA-NF--GN-KVPFGDITKISPS--DIPDFDILLGGFP   68 (315)
T ss_pred             CEEEecCccHHHHHHHHc-C-CeEEEEEeCCHHHHHHHHH-hC--CC-CCCccChhhhhhh--hCCCcCEEEecCC
Confidence            699999999999888754 2 2357889999877544333 21  23 5667898876532  1246899999988

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=96.05  E-value=0.11  Score=46.60  Aligned_cols=75  Identities=16%  Similarity=0.189  Sum_probs=41.0

Q ss_pred             CEEEEEcccCChHHH-HHHHHhCCCCEEEEEeCChHHHHHHHHHhh----cCCCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          145 ARVLYLGAASGTTVS-HVSDIVGPNGVVYAVEFSHRSGRDLVNMAK----KRTNVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~-~la~~~~~~g~V~avD~s~~~~~~l~~~a~----~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      ++|+=+|||+=-+|. .|+....+...|..+|+++.+.+...+...    ....+.+++.|+.+...   ....||+|+.
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~---dl~~~DvV~l  198 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTY---DLKEYDVVFL  198 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-G---G----SEEEE
T ss_pred             ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccc---ccccCCEEEE
Confidence            499999999766555 555555556789999999877543333222    34489999999987542   2358999997


Q ss_pred             cCC
Q 024665          220 DVA  222 (264)
Q Consensus       220 d~p  222 (264)
                      -..
T Consensus       199 Aal  201 (276)
T PF03059_consen  199 AAL  201 (276)
T ss_dssp             -TT
T ss_pred             hhh
Confidence            655

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PHA01634 hypothetical protein

Probab=95.99  E-value=0.04  Score=43.72  Aligned_cols=74  Identities=14%  Similarity=0.096  Sum_probs=47.9

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      .+.+|+|+|+..|..++.++..  .+.+|+++|.++...+.+.+..+ ..||   +--+.-...+...-++||+.+.|--
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~--GAK~Vva~E~~~kl~k~~een~k-~nnI---~DK~v~~~eW~~~Y~~~Di~~iDCe  101 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLR--GASFVVQYEKEEKLRKKWEEVCA-YFNI---CDKAVMKGEWNGEYEDVDIFVMDCE  101 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhc--CccEEEEeccCHHHHHHHHHHhh-hhee---eeceeecccccccCCCcceEEEEcc
Confidence            5789999999999999999866  67799999999877544433222 2121   1111111111122368999988855

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=95.88  E-value=0.0096  Score=50.49  Aligned_cols=49  Identities=22%  Similarity=0.239  Sum_probs=34.1

Q ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHH
Q 024665          126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSG  181 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~  181 (264)
                      ..|+..++    ++.-.+++.|||..||||+++.++.++   .-+.+++|+++...
T Consensus       178 ~~l~~~lI----~~~t~~gdiVlDpF~GSGTT~~aa~~l---~R~~ig~E~~~~y~  226 (231)
T PF01555_consen  178 VELIERLI----KASTNPGDIVLDPFAGSGTTAVAAEEL---GRRYIGIEIDEEYC  226 (231)
T ss_dssp             HHHHHHHH----HHHS-TT-EEEETT-TTTHHHHHHHHT---T-EEEEEESSHHHH
T ss_pred             HHHHHHHH----HhhhccceeeehhhhccChHHHHHHHc---CCeEEEEeCCHHHH
Confidence            34555554    334578999999999999998888766   33799999998653

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=95.74  E-value=0.058  Score=49.52  Aligned_cols=73  Identities=19%  Similarity=0.120  Sum_probs=50.8

Q ss_pred             CEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCC-CccEEEEcCCC
Q 024665          145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVG-MVDVIFSDVAQ  223 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~-~fD~V~~d~p~  223 (264)
                      .+|+||+||.|.+.+-+... + --.+.++|+++.+.+.. +.|.  +...+++.|+...... .... .+|+|+.-+|+
T Consensus         4 ~~~idLFsG~GG~~lGf~~a-g-f~~~~a~Eid~~a~~ty-~~n~--~~~~~~~~di~~~~~~-~~~~~~~DvligGpPC   77 (328)
T COG0270           4 MKVIDLFAGIGGLSLGFEEA-G-FEIVFANEIDPPAVATY-KANF--PHGDIILGDIKELDGE-ALRKSDVDVLIGGPPC   77 (328)
T ss_pred             ceEEeeccCCchHHHHHHhc-C-CeEEEEEecCHHHHHHH-HHhC--CCCceeechHhhcChh-hccccCCCEEEeCCCC
Confidence            47999999999999888765 2 33699999998664332 2221  1256778888765532 1223 79999999993

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=95.68  E-value=0.034  Score=48.46  Aligned_cols=89  Identities=13%  Similarity=0.146  Sum_probs=59.9

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC--CeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT--NVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~--nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      .-..++|+||+.|.+.-|+...  .-.+++-+|.|-.|++.... +. .+  .+.....|-..++   +..+++|+|++.
T Consensus        72 ~fp~a~diGcs~G~v~rhl~~e--~vekli~~DtS~~M~~s~~~-~q-dp~i~~~~~v~DEE~Ld---f~ens~DLiisS  144 (325)
T KOG2940|consen   72 SFPTAFDIGCSLGAVKRHLRGE--GVEKLIMMDTSYDMIKSCRD-AQ-DPSIETSYFVGDEEFLD---FKENSVDLIISS  144 (325)
T ss_pred             hCcceeecccchhhhhHHHHhc--chhheeeeecchHHHHHhhc-cC-CCceEEEEEecchhccc---ccccchhhhhhh
Confidence            3557999999999999998765  34589999999877543222 11 12  3555677755444   345799999987


Q ss_pred             CCC-----chHHHHHHHHHhCCC
Q 024665          221 VAQ-----PDQVCFLCLILFQPI  238 (264)
Q Consensus       221 ~p~-----~~~~~~~~~~~l~~~  238 (264)
                      ...     -....+....+++|.
T Consensus       145 lslHW~NdLPg~m~~ck~~lKPD  167 (325)
T KOG2940|consen  145 LSLHWTNDLPGSMIQCKLALKPD  167 (325)
T ss_pred             hhhhhhccCchHHHHHHHhcCCC
Confidence            762     223445556667766

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=95.55  E-value=0.1  Score=48.11  Aligned_cols=93  Identities=20%  Similarity=0.186  Sum_probs=57.0

Q ss_pred             cccccCCCCCCEEEEEccc-CChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcC-CCCchhhcccCC
Q 024665          135 GVDNIWIKPGARVLYLGAA-SGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIED-ARHPAKYRMLVG  212 (264)
Q Consensus       135 ~l~~~~l~~g~~VLDlG~G-~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D-~~~~~~~~~~~~  212 (264)
                      .|....++|+++|+=+|+| .|..++.+|..++  .+|+++|.+++-.    +.+++..--+++... .....   ...+
T Consensus       158 alk~~~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~----e~a~~lGAd~~i~~~~~~~~~---~~~~  228 (339)
T COG1064         158 ALKKANVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKL----ELAKKLGADHVINSSDSDALE---AVKE  228 (339)
T ss_pred             ehhhcCCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHH----HHHHHhCCcEEEEcCCchhhH---HhHh
Confidence            3455679999999999887 3457778888765  6999999998543    333333222344422 21111   1223


Q ss_pred             CccEEEEcCCCchHHHHHHHHHhCCC
Q 024665          213 MVDVIFSDVAQPDQVCFLCLILFQPI  238 (264)
Q Consensus       213 ~fD~V~~d~p~~~~~~~~~~~~l~~~  238 (264)
                      .||+|+..++  ......++..+++.
T Consensus       229 ~~d~ii~tv~--~~~~~~~l~~l~~~  252 (339)
T COG1064         229 IADAIIDTVG--PATLEPSLKALRRG  252 (339)
T ss_pred             hCcEEEECCC--hhhHHHHHHHHhcC
Confidence            5999998777  34444555555443

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=95.53  E-value=0.034  Score=48.02  Aligned_cols=79  Identities=18%  Similarity=0.201  Sum_probs=60.2

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      -..|.+||.+|-|-|.....+-+.  +--+=+-||-.+.+.+.++..... +.||+++.+-..+.... ...+.||-|+-
T Consensus        99 ~tkggrvLnVGFGMgIidT~iQe~--~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~-L~d~~FDGI~y  175 (271)
T KOG1709|consen   99 STKGGRVLNVGFGMGIIDTFIQEA--PPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNT-LPDKHFDGIYY  175 (271)
T ss_pred             hhCCceEEEeccchHHHHHHHhhc--CCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhcc-ccccCcceeEe
Confidence            367889999999999999988876  334567789999888777776643 34999988776664432 34568999999


Q ss_pred             cCC
Q 024665          220 DVA  222 (264)
Q Consensus       220 d~p  222 (264)
                      |.-
T Consensus       176 DTy  178 (271)
T KOG1709|consen  176 DTY  178 (271)
T ss_pred             ech
Confidence            865

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=95.46  E-value=0.045  Score=51.29  Aligned_cols=92  Identities=20%  Similarity=0.004  Sum_probs=57.3

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHH---HHHHHhhcCC-CeEEEEcCCCCchhhcccCCCccEEE
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGR---DLVNMAKKRT-NVIPIIEDARHPAKYRMLVGMVDVIF  218 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~---~l~~~a~~~~-nV~~i~~D~~~~~~~~~~~~~fD~V~  218 (264)
                      ..-+|||.=||||.=++..+..+....+|++.|+|+++.+   ++++.|.... .+++.+.|+..+..  .....||+|=
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~--~~~~~fD~ID  126 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY--SRQERFDVID  126 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC--HSTT-EEEEE
T ss_pred             CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh--hccccCCEEE
Confidence            3458999999999999999998766679999999987653   3333444334 58899999876431  1346899999


Q ss_pred             EcCC-CchHHHHHHHHHhC
Q 024665          219 SDVA-QPDQVCFLCLILFQ  236 (264)
Q Consensus       219 ~d~p-~~~~~~~~~~~~l~  236 (264)
                      +||= .|......++.+.+
T Consensus       127 lDPfGSp~pfldsA~~~v~  145 (377)
T PF02005_consen  127 LDPFGSPAPFLDSALQAVK  145 (377)
T ss_dssp             E--SS--HHHHHHHHHHEE
T ss_pred             eCCCCCccHhHHHHHHHhh
Confidence            9976 44444444444443

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=95.41  E-value=0.15  Score=47.32  Aligned_cols=89  Identities=20%  Similarity=0.053  Sum_probs=61.6

Q ss_pred             CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEEcC
Q 024665          144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDV  221 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~  221 (264)
                      ..+|||.-||||.=++..|...... +|+..|+|+.+.+-..++...+  .+..+++.|+..+..  .....||+|=.||
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~-~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~--~~~~~fd~IDiDP  129 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVV-KVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLH--ELHRAFDVIDIDP  129 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCcc-EEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHH--hcCCCccEEecCC
Confidence            5689999999999999999887644 8999999998864444433333  167777788765432  2336899998887


Q ss_pred             C-CchHHHHHHHHHh
Q 024665          222 A-QPDQVCFLCLILF  235 (264)
Q Consensus       222 p-~~~~~~~~~~~~l  235 (264)
                      = .|......++.+.
T Consensus       130 FGSPaPFlDaA~~s~  144 (380)
T COG1867         130 FGSPAPFLDAALRSV  144 (380)
T ss_pred             CCCCchHHHHHHHHh
Confidence            6 3443433344333

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=95.40  E-value=0.072  Score=46.95  Aligned_cols=75  Identities=13%  Similarity=0.010  Sum_probs=49.9

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHh-hcCCCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA-KKRTNVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a-~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      +.+-++|||||||.=-+++.+.... +...++|+|++..+++-+.... ....+..+...|...-.    .....|+.++
T Consensus       103 ~~~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~----~~~~~DlaLl  177 (251)
T PF07091_consen  103 IPPPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP----PKEPADLALL  177 (251)
T ss_dssp             S---SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH----TTSEESEEEE
T ss_pred             CCCCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC----CCCCcchhhH
Confidence            4557899999999999998877552 4569999999987765544442 33458888888987643    2357888886


Q ss_pred             c
Q 024665          220 D  220 (264)
Q Consensus       220 d  220 (264)
                      =
T Consensus       178 l  178 (251)
T PF07091_consen  178 L  178 (251)
T ss_dssp             E
T ss_pred             H
Confidence            3

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=95.40  E-value=0.057  Score=46.44  Aligned_cols=86  Identities=9%  Similarity=-0.030  Sum_probs=44.9

Q ss_pred             HHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc
Q 024665          131 AVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML  210 (264)
Q Consensus       131 ~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~  210 (264)
                      .++..|.  ...+...|-|+|||-..++..+.    ..-+|+..|+-.           .++  .++..|+.+.+.   .
T Consensus        62 ~iI~~l~--~~~~~~viaD~GCGdA~la~~~~----~~~~V~SfDLva-----------~n~--~Vtacdia~vPL---~  119 (219)
T PF05148_consen   62 VIIEWLK--KRPKSLVIADFGCGDAKLAKAVP----NKHKVHSFDLVA-----------PNP--RVTACDIANVPL---E  119 (219)
T ss_dssp             HHHHHHC--TS-TTS-EEEES-TT-HHHHH------S---EEEEESS------------SST--TEEES-TTS-S-----
T ss_pred             HHHHHHH--hcCCCEEEEECCCchHHHHHhcc----cCceEEEeeccC-----------CCC--CEEEecCccCcC---C
Confidence            3444444  24456799999999999885543    233699999874           122  367799988763   4


Q ss_pred             CCCccEEEEcCC----CchHHHHHHHHHhCCC
Q 024665          211 VGMVDVIFSDVA----QPDQVCFLCLILFQPI  238 (264)
Q Consensus       211 ~~~fD~V~~d~p----~~~~~~~~~~~~l~~~  238 (264)
                      .+.+|++++-.+    ........+...|++.
T Consensus       120 ~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~  151 (219)
T PF05148_consen  120 DESVDVAVFCLSLMGTNWPDFIREANRVLKPG  151 (219)
T ss_dssp             TT-EEEEEEES---SS-HHHHHHHHHHHEEEE
T ss_pred             CCceeEEEEEhhhhCCCcHHHHHHHHheeccC
Confidence            578999998655    2223344444455544

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=95.33  E-value=0.24  Score=37.19  Aligned_cols=71  Identities=20%  Similarity=0.150  Sum_probs=44.6

Q ss_pred             EEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC-C-eEEEEcCCCCc-hhhcccC-CCccEEEEc
Q 024665          147 VLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT-N-VIPIIEDARHP-AKYRMLV-GMVDVIFSD  220 (264)
Q Consensus       147 VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~-n-V~~i~~D~~~~-~~~~~~~-~~fD~V~~d  220 (264)
                      |||++||+|..+ .++........++++|+++.++........... + +.++..|.... .+  ... ..||++.+.
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~  126 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLP--FEDSASFDLVISL  126 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCC--CCCCCceeEEeee
Confidence            999999999988 555553222379999999877544222222211 1 68888887662 22  122 379999433

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=95.28  E-value=0.051  Score=46.51  Aligned_cols=80  Identities=11%  Similarity=0.218  Sum_probs=52.4

Q ss_pred             CEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHH---HHHHHHHhhcC------CCeEEEEcCCCCchhhcccCCCcc
Q 024665          145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRS---GRDLVNMAKKR------TNVIPIIEDARHPAKYRMLVGMVD  215 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~---~~~l~~~a~~~------~nV~~i~~D~~~~~~~~~~~~~fD  215 (264)
                      -.+.|+|||-|.+.+.||.++ |+-.|.+.||...+   +++-|+.....      .||.+...++..+.+.-+..++.+
T Consensus        62 vefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs  140 (249)
T KOG3115|consen   62 VEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS  140 (249)
T ss_pred             ceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence            458999999999999999986 67789999998433   33333333322      378888888776544322233445


Q ss_pred             EEEEcCCCch
Q 024665          216 VIFSDVAQPD  225 (264)
Q Consensus       216 ~V~~d~p~~~  225 (264)
                      -.+.-.|.|.
T Consensus       141 kmff~fpdpH  150 (249)
T KOG3115|consen  141 KMFFLFPDPH  150 (249)
T ss_pred             cceeecCChh
Confidence            5554445443

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=95.26  E-value=0.041  Score=47.53  Aligned_cols=95  Identities=18%  Similarity=0.033  Sum_probs=56.1

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc-CC-CeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-RT-NVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~-~~-nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      .-.+.||+|||.|..|..+...+  --+|-.||..+..++.+.+.... .. -.++++.-+.++.+   ...+||+|.+-
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P---~~~~YDlIW~Q  129 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTP---EEGKYDLIWIQ  129 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG-------TT-EEEEEEE
T ss_pred             CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccC---CCCcEeEEEeh
Confidence            45689999999999998775332  23899999999886665544333 12 35677777777653   23689999973


Q ss_pred             CCCchHHHHHHHHHhCC-CcHHHHHHHHHHhh
Q 024665          221 VAQPDQVCFLCLILFQP-IVINNLQSVNNETK  251 (264)
Q Consensus       221 ~p~~~~~~~~~~~~l~~-~~~~~l~~~~~~Lk  251 (264)
                      =         .+..|.- .++.++..+.++|+
T Consensus       130 W---------~lghLTD~dlv~fL~RCk~~L~  152 (218)
T PF05891_consen  130 W---------CLGHLTDEDLVAFLKRCKQALK  152 (218)
T ss_dssp             S----------GGGS-HHHHHHHHHHHHHHEE
T ss_pred             H---------hhccCCHHHHHHHHHHHHHhCc
Confidence            1         1111111 16667777777777

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=95.26  E-value=0.15  Score=45.42  Aligned_cols=72  Identities=22%  Similarity=0.227  Sum_probs=55.0

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      -+.|++.-+|||+.+|.||..|...   .-.||+||.-+-+     +.......|+....|-.++.+   -..++|..+|
T Consensus       208 rL~~~M~avDLGAcPGGWTyqLVkr---~m~V~aVDng~ma-----~sL~dtg~v~h~r~DGfk~~P---~r~~idWmVC  276 (358)
T COG2933         208 RLAPGMWAVDLGACPGGWTYQLVKR---NMRVYAVDNGPMA-----QSLMDTGQVTHLREDGFKFRP---TRSNIDWMVC  276 (358)
T ss_pred             hhcCCceeeecccCCCccchhhhhc---ceEEEEeccchhh-----hhhhcccceeeeeccCccccc---CCCCCceEEe
Confidence            4789999999999999999999765   4589999987522     111123478888888877653   1358999999


Q ss_pred             cCC
Q 024665          220 DVA  222 (264)
Q Consensus       220 d~p  222 (264)
                      |+.
T Consensus       277 DmV  279 (358)
T COG2933         277 DMV  279 (358)
T ss_pred             ehh
Confidence            988

>PRK11524 putative methyltransferase; Provisional

Probab=95.06  E-value=0.04  Score=49.48  Aligned_cols=39  Identities=23%  Similarity=0.029  Sum_probs=32.3

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHH
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSG  181 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~  181 (264)
                      .=.+|+.|||-.||||++++++.++   .-+.+++|++++..
T Consensus       205 ~S~~GD~VLDPF~GSGTT~~AA~~l---gR~~IG~Ei~~~Y~  243 (284)
T PRK11524        205 SSNPGDIVLDPFAGSFTTGAVAKAS---GRKFIGIEINSEYI  243 (284)
T ss_pred             hCCCCCEEEECCCCCcHHHHHHHHc---CCCEEEEeCCHHHH
Confidence            3479999999999999998887766   33799999998553

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=94.92  E-value=0.11  Score=46.57  Aligned_cols=79  Identities=19%  Similarity=0.259  Sum_probs=57.0

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      .|..|+=+|  -=-++...+.+.+-..+|.-||++++.+.-..+.+.+.  .||+.+..|++++.+. .+..+||+.+.|
T Consensus       152 ~gK~I~vvG--DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe-~~~~kFDvfiTD  228 (354)
T COG1568         152 EGKEIFVVG--DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPE-DLKRKFDVFITD  228 (354)
T ss_pred             CCCeEEEEc--CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChH-HHHhhCCeeecC
Confidence            466788887  44455555555565668999999998875544444433  2799999999997654 456799999999


Q ss_pred             CCCc
Q 024665          221 VAQP  224 (264)
Q Consensus       221 ~p~~  224 (264)
                      ||..
T Consensus       229 PpeT  232 (354)
T COG1568         229 PPET  232 (354)
T ss_pred             chhh
Confidence            9943

>PRK10458 DNA cytosine methylase; Provisional

Probab=94.72  E-value=0.2  Score=48.33  Aligned_cols=78  Identities=19%  Similarity=0.143  Sum_probs=51.7

Q ss_pred             CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhh--------------cc
Q 024665          144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY--------------RM  209 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~--------------~~  209 (264)
                      .-+++||.||.|.+++-+-.. + --.|.++|+++.+.+....+-...++.++++.|++++...              ..
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~a-G-~~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~  165 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAI-G-GQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDITLSHKEGVSDEEAAEHIRQ  165 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHc-C-CEEEEEEechHHHHHHHHHHcCCCCccceeccChhhCccccccccchhhhhhhhhc
Confidence            458999999999999998654 3 2368999999876544333211123456677787765421              00


Q ss_pred             cCCCccEEEEcCCC
Q 024665          210 LVGMVDVIFSDVAQ  223 (264)
Q Consensus       210 ~~~~fD~V~~d~p~  223 (264)
                      ....+|+++.-+|+
T Consensus       166 ~~p~~DvL~gGpPC  179 (467)
T PRK10458        166 HIPDHDVLLAGFPC  179 (467)
T ss_pred             cCCCCCEEEEcCCC
Confidence            12368999999994

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=94.36  E-value=0.15  Score=45.21  Aligned_cols=57  Identities=18%  Similarity=0.116  Sum_probs=41.3

Q ss_pred             CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665          144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      ...|-|+|||-+-+++.      ..-+|+..|+-+             .|=.++..|+++.+   ..++++|++++-.+
T Consensus       181 ~~vIaD~GCGEakiA~~------~~~kV~SfDL~a-------------~~~~V~~cDm~~vP---l~d~svDvaV~CLS  237 (325)
T KOG3045|consen  181 NIVIADFGCGEAKIASS------ERHKVHSFDLVA-------------VNERVIACDMRNVP---LEDESVDVAVFCLS  237 (325)
T ss_pred             ceEEEecccchhhhhhc------cccceeeeeeec-------------CCCceeeccccCCc---CccCcccEEEeeHh
Confidence            45789999999887761      223699998753             13457889999866   35679999987544

>PRK13699 putative methylase; Provisional

Probab=94.33  E-value=0.073  Score=46.35  Aligned_cols=39  Identities=23%  Similarity=0.181  Sum_probs=31.9

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHH
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSG  181 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~  181 (264)
                      .-++++.|||-.||||++...+.+.   .-..+++|+++...
T Consensus       160 ~s~~g~~vlDpf~Gsgtt~~aa~~~---~r~~~g~e~~~~y~  198 (227)
T PRK13699        160 FTHPNAIVLDPFAGSGSTCVAALQS---GRRYIGIELLEQYH  198 (227)
T ss_pred             hCCCCCEEEeCCCCCCHHHHHHHHc---CCCEEEEecCHHHH
Confidence            3568999999999999998888765   33789999997553

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=94.29  E-value=0.26  Score=37.42  Aligned_cols=82  Identities=12%  Similarity=0.122  Sum_probs=54.6

Q ss_pred             ccCChHHHHHHHHhCCCC-EEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc-cCCCccEEEEcCCCchHHHH
Q 024665          152 AASGTTVSHVSDIVGPNG-VVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-LVGMVDVIFSDVAQPDQVCF  229 (264)
Q Consensus       152 ~G~G~~s~~la~~~~~~g-~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~-~~~~fD~V~~d~p~~~~~~~  229 (264)
                      ||.|.++..+++.+.... .|+.+|.++...    +.+... .+.++.+|+++...+.. -...+|.|++..+.......
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~----~~~~~~-~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~   78 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERV----EELREE-GVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLL   78 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHH----HHHHHT-TSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHH
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHH----HHHHhc-ccccccccchhhhHHhhcCccccCEEEEccCCHHHHHH
Confidence            788899999998887777 899999998553    333222 37899999999765422 23589999988775544333


Q ss_pred             H--HHHHhCCC
Q 024665          230 L--CLILFQPI  238 (264)
Q Consensus       230 ~--~~~~l~~~  238 (264)
                      .  ....+.+.
T Consensus        79 ~~~~~r~~~~~   89 (116)
T PF02254_consen   79 IALLARELNPD   89 (116)
T ss_dssp             HHHHHHHHTTT
T ss_pred             HHHHHHHHCCC
Confidence            3  33444554

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=94.08  E-value=0.21  Score=43.90  Aligned_cols=18  Identities=11%  Similarity=0.207  Sum_probs=12.5

Q ss_pred             EEEEcccCChHHHHHHHH
Q 024665          147 VLYLGAASGTTVSHVSDI  164 (264)
Q Consensus       147 VLDlG~G~G~~s~~la~~  164 (264)
                      -++.--=+|-..+.||.+
T Consensus       186 AVEfs~rsGRdL~nmAkk  203 (317)
T KOG1596|consen  186 AVEFSHRSGRDLINMAKK  203 (317)
T ss_pred             EEEecccchHHHHHHhhc
Confidence            345556677788888876

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=93.97  E-value=0.02  Score=49.18  Aligned_cols=39  Identities=28%  Similarity=0.338  Sum_probs=33.3

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHH
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDL  184 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l  184 (264)
                      ...++||+|+|.|-+|.+++..+.   +|||.|.|..|..++
T Consensus       112 ~~~~lLDlGAGdGeit~~m~p~fe---evyATElS~tMr~rL  150 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMAPTFE---EVYATELSWTMRDRL  150 (288)
T ss_pred             CCeeEEeccCCCcchhhhhcchHH---HHHHHHhhHHHHHHH
Confidence            346899999999999999998876   799999999875443

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=93.84  E-value=0.17  Score=45.06  Aligned_cols=62  Identities=21%  Similarity=0.214  Sum_probs=38.4

Q ss_pred             CEEEEEcccCCh--HHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCC--eEEEEcCCCCchh
Q 024665          145 ARVLYLGAASGT--TVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTN--VIPIIEDARHPAK  206 (264)
Q Consensus       145 ~~VLDlG~G~G~--~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~n--V~~i~~D~~~~~~  206 (264)
                      ...||||||-=+  .+..+|+.+.|.++|+=||+++-++..........++  ..++++|++++..
T Consensus        70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~  135 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEA  135 (267)
T ss_dssp             -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHH
T ss_pred             ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHH
Confidence            479999999765  6788999999999999999998664333333333446  8999999999753

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=93.17  E-value=0.19  Score=46.96  Aligned_cols=95  Identities=17%  Similarity=0.174  Sum_probs=68.0

Q ss_pred             HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCCh---HHHHHHH-------HHhhcCC-CeE
Q 024665          127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSH---RSGRDLV-------NMAKKRT-NVI  195 (264)
Q Consensus       127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~---~~~~~l~-------~~a~~~~-nV~  195 (264)
                      ...+++....+++.+.|++...|+|.|.|.+...+|...+ ..+=+++|+..   .++....       ++..+++ .++
T Consensus       176 ~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~-~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~  254 (419)
T KOG3924|consen  176 TQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAG-CKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIE  254 (419)
T ss_pred             hhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhc-cccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCcee
Confidence            3555666667788899999999999999999999998864 33567888762   2322222       2232333 588


Q ss_pred             EEEcCCCCchhhcccCCCccEEEEcCC
Q 024665          196 PIIEDARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       196 ~i~~D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      .++++..++.....+....++||+|-.
T Consensus       255 ~i~gsf~~~~~v~eI~~eatvi~vNN~  281 (419)
T KOG3924|consen  255 TIHGSFLDPKRVTEIQTEATVIFVNNV  281 (419)
T ss_pred             ecccccCCHHHHHHHhhcceEEEEecc
Confidence            999999987655455678999998765

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=92.85  E-value=0.63  Score=40.30  Aligned_cols=79  Identities=16%  Similarity=0.143  Sum_probs=54.8

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHh---hcCCCeEEEEcCCCCchhhcccCCCccEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA---KKRTNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a---~~~~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      ++.+..++|+||=-+++.+.|... .+...+++.|+++...+.++++-   .....+++.++|.....   .....+|+|
T Consensus        14 V~~~~~iaDIGsDHAYLp~~Lv~~-~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l---~~~d~~d~i   89 (226)
T COG2384          14 VKQGARIADIGSDHAYLPIYLVKN-NPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVL---ELEDEIDVI   89 (226)
T ss_pred             HHcCCceeeccCchhHhHHHHHhc-CCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcccc---CccCCcCEE
Confidence            456777999999999999999876 45678999999965544444433   33347888888875543   123367776


Q ss_pred             E-EcCCC
Q 024665          218 F-SDVAQ  223 (264)
Q Consensus       218 ~-~d~p~  223 (264)
                      + +-+--
T Consensus        90 vIAGMGG   96 (226)
T COG2384          90 VIAGMGG   96 (226)
T ss_pred             EEeCCcH
Confidence            5 55543

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=92.79  E-value=0.66  Score=43.68  Aligned_cols=79  Identities=19%  Similarity=0.225  Sum_probs=54.4

Q ss_pred             CEEEEEcccCChHHHHHHHHhCCC--CEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665          145 ARVLYLGAASGTTVSHVSDIVGPN--GVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~~~~--g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      ++||=+||  |..+..+|..+...  .+|+..|.+....+++.+..  ..++++++-|+.+......+...+|+|+.-.|
T Consensus         2 ~~ilviGa--G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~--~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p   77 (389)
T COG1748           2 MKILVIGA--GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI--GGKVEALQVDAADVDALVALIKDFDLVINAAP   77 (389)
T ss_pred             CcEEEECC--chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc--cccceeEEecccChHHHHHHHhcCCEEEEeCC
Confidence            46889999  77777776664322  59999999975543333322  23799999999998655445667799997777


Q ss_pred             CchHH
Q 024665          223 QPDQV  227 (264)
Q Consensus       223 ~~~~~  227 (264)
                      ++...
T Consensus        78 ~~~~~   82 (389)
T COG1748          78 PFVDL   82 (389)
T ss_pred             chhhH
Confidence            44433

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=92.56  E-value=0.29  Score=46.50  Aligned_cols=58  Identities=16%  Similarity=0.082  Sum_probs=42.1

Q ss_pred             EEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHH---HHHHHHhhcCCCeEEEEcCCCCch
Q 024665          146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSG---RDLVNMAKKRTNVIPIIEDARHPA  205 (264)
Q Consensus       146 ~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~---~~l~~~a~~~~nV~~i~~D~~~~~  205 (264)
                      .|||+|+|||-++..++...  +-.|||+|.-..|+   +....++...++|++|..--++..
T Consensus        69 ~vLdigtGTGLLSmMAvrag--aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~  129 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAG--ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVK  129 (636)
T ss_pred             EEEEccCCccHHHHHHHHhc--CCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceee
Confidence            59999999999999888774  34699999986664   333334444458888877666543

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=92.15  E-value=2.1  Score=35.34  Aligned_cols=71  Identities=18%  Similarity=0.185  Sum_probs=46.8

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhc-ccCCCccEEEEcC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR-MLVGMVDVIFSDV  221 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~-~~~~~fD~V~~d~  221 (264)
                      +..+|+=|+|=|=...+.  ....+..+++-.|++.+..       ....+ +++.-|...+.... .+..+||+|++||
T Consensus        25 ~~~~iaclstPsl~~~l~--~~~~~~~~~~Lle~D~RF~-------~~~~~-~F~fyD~~~p~~~~~~l~~~~d~vv~DP   94 (162)
T PF10237_consen   25 DDTRIACLSTPSLYEALK--KESKPRIQSFLLEYDRRFE-------QFGGD-EFVFYDYNEPEELPEELKGKFDVVVIDP   94 (162)
T ss_pred             CCCEEEEEeCcHHHHHHH--hhcCCCccEEEEeecchHH-------hcCCc-ceEECCCCChhhhhhhcCCCceEEEECC
Confidence            567898887755443333  3334566899999998761       12224 57788887765331 2346999999999


Q ss_pred             CC
Q 024665          222 AQ  223 (264)
Q Consensus       222 p~  223 (264)
                      |.
T Consensus        95 PF   96 (162)
T PF10237_consen   95 PF   96 (162)
T ss_pred             CC
Confidence            93

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=91.93  E-value=0.46  Score=45.63  Aligned_cols=110  Identities=16%  Similarity=0.168  Sum_probs=72.3

Q ss_pred             CCCCC-EEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHh-hcCCCeEEEEcCCCCchhhcccCCCccEEE
Q 024665          141 IKPGA-RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA-KKRTNVIPIIEDARHPAKYRMLVGMVDVIF  218 (264)
Q Consensus       141 l~~g~-~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a-~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~  218 (264)
                      ++|-. ++|-+|||.=-++.++-+-.  --.|+.+|+|+-.+..+...+ +.++-+.+...|++...   +..++||+|+
T Consensus        45 ~~p~~~~~l~lGCGNS~l~e~ly~~G--~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~---fedESFdiVI  119 (482)
T KOG2352|consen   45 LSPSDFKILQLGCGNSELSEHLYKNG--FEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLV---FEDESFDIVI  119 (482)
T ss_pred             hchhhceeEeecCCCCHHHHHHHhcC--CCCceeccccHHHHHHHHhccccCCcceEEEEecchhcc---CCCcceeEEE
Confidence            55666 99999999998888887652  336999999987765555555 44457888999988765   4567899998


Q ss_pred             Ec----CCCchHHHHHHHHHhCCCcHHHHHHHHHHhh-cchhhhhh
Q 024665          219 SD----VAQPDQVCFLCLILFQPIVINNLQSVNNETK-GGIFEFLF  259 (264)
Q Consensus       219 ~d----~p~~~~~~~~~~~~l~~~~~~~l~~~~~~Lk-~g~f~~l~  259 (264)
                      .-    ....+....... ++   ....+.++.+.|+ +++|..+.
T Consensus       120 dkGtlDal~~de~a~~~~-~~---v~~~~~eVsrvl~~~gk~~svt  161 (482)
T KOG2352|consen  120 DKGTLDALFEDEDALLNT-AH---VSNMLDEVSRVLAPGGKYISVT  161 (482)
T ss_pred             ecCccccccCCchhhhhh-HH---hhHHHhhHHHHhccCCEEEEEE
Confidence            52    222222222211 11   3445666777777 66665443

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=91.47  E-value=0.25  Score=37.99  Aligned_cols=49  Identities=16%  Similarity=0.190  Sum_probs=33.8

Q ss_pred             HHHHHHhcccccCC-CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChH
Q 024665          128 LAAAVLGGVDNIWI-KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHR  179 (264)
Q Consensus       128 l~~~il~~l~~~~l-~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~  179 (264)
                      +++.++...+++.. .+-...+|||||+|-++..|... +-  .=+++|...+
T Consensus        42 IAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~E-Gy--~G~GiD~R~R   91 (112)
T PF07757_consen   42 IAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSE-GY--PGWGIDARRR   91 (112)
T ss_pred             HHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhC-CC--Cccccccccc
Confidence            55555555554433 35567999999999999999876 22  3488887643

; GO: 0008168 methyltransferase activity

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=90.34  E-value=1.2  Score=39.40  Aligned_cols=75  Identities=15%  Similarity=0.038  Sum_probs=43.0

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHH--HHHHHHHhhc-----CCCeEEEEcCCCCchhhcccCCC-c
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRS--GRDLVNMAKK-----RTNVIPIIEDARHPAKYRMLVGM-V  214 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~--~~~l~~~a~~-----~~nV~~i~~D~~~~~~~~~~~~~-f  214 (264)
                      ...+||++|+|+|...+.+|..  ...+|.--|+...+  ++.+...+..     ...|.+..-+..++.......+. +
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~--~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~  163 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALL--LGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPF  163 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHH--hcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcc
Confidence            3557999999999777777765  34577777776322  2222111111     11556655555554322223345 8


Q ss_pred             cEEEE
Q 024665          215 DVIFS  219 (264)
Q Consensus       215 D~V~~  219 (264)
                      |+|++
T Consensus       164 Dlila  168 (248)
T KOG2793|consen  164 DLILA  168 (248)
T ss_pred             cEEEE
Confidence            99985

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=90.32  E-value=0.26  Score=47.38  Aligned_cols=93  Identities=19%  Similarity=0.110  Sum_probs=64.6

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHH---HHHhhcCCCeEEEEcCCCCch-hhcccCCCccEEE
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDL---VNMAKKRTNVIPIIEDARHPA-KYRMLVGMVDVIF  218 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l---~~~a~~~~nV~~i~~D~~~~~-~~~~~~~~fD~V~  218 (264)
                      +.-+|||.-|++|.-++..|..+..-.+|+|.|.+++++...   ++.|....-|++.+.|+...- ...+....||+|=
T Consensus       109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID  188 (525)
T KOG1253|consen  109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID  188 (525)
T ss_pred             CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEe
Confidence            456899999999999999999988778999999998775433   333333336788888886532 1123346899999


Q ss_pred             EcCC-CchHHHHHHHHHh
Q 024665          219 SDVA-QPDQVCFLCLILF  235 (264)
Q Consensus       219 ~d~p-~~~~~~~~~~~~l  235 (264)
                      +||- .|......+.+++
T Consensus       189 LDPyGs~s~FLDsAvqav  206 (525)
T KOG1253|consen  189 LDPYGSPSPFLDSAVQAV  206 (525)
T ss_pred             cCCCCCccHHHHHHHHHh
Confidence            9976 3444444444443

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=90.13  E-value=1.3  Score=42.97  Aligned_cols=79  Identities=16%  Similarity=0.111  Sum_probs=47.0

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC---CCCEEEEEeCChHHHHHHHHHhhc---C-CCeEEEEcCCCCchhhcccCCCcc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG---PNGVVYAVEFSHRSGRDLVNMAKK---R-TNVIPIIEDARHPAKYRMLVGMVD  215 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~---~~g~V~avD~s~~~~~~l~~~a~~---~-~nV~~i~~D~~~~~~~~~~~~~fD  215 (264)
                      |+..|.|.+||+|.+.......+.   ....+|+.|....+....+.....   . ......+.|-...+.+ ....+||
T Consensus       217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~-~~~~~~D  295 (501)
T TIGR00497       217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEW-ENENGFE  295 (501)
T ss_pred             CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccc-cccccCC
Confidence            678999999999998876554432   224689999997663222221111   1 1223334454332211 1124699


Q ss_pred             EEEEcCC
Q 024665          216 VIFSDVA  222 (264)
Q Consensus       216 ~V~~d~p  222 (264)
                      +|++|+|
T Consensus       296 ~v~~NpP  302 (501)
T TIGR00497       296 VVVSNPP  302 (501)
T ss_pred             EEeecCC
Confidence            9999998

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=89.98  E-value=0.071  Score=51.26  Aligned_cols=67  Identities=15%  Similarity=0.158  Sum_probs=40.0

Q ss_pred             EEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHH-HHHHHHHhhcCCCeEEEEcCC-CCchhhcccCCCccEEEEc
Q 024665          146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRS-GRDLVNMAKKRTNVIPIIEDA-RHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       146 ~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~-~~~l~~~a~~~~nV~~i~~D~-~~~~~~~~~~~~fD~V~~d  220 (264)
                      .+||+|||+|+++.+|.++     .|+.+-+.+.- .+..++.|..+. |-.+.+-+ ++-.+  +....||+|.|-
T Consensus       120 ~~LDvGcG~aSF~a~l~~r-----~V~t~s~a~~d~~~~qvqfaleRG-vpa~~~~~~s~rLP--fp~~~fDmvHcs  188 (506)
T PF03141_consen  120 TALDVGCGVASFGAYLLER-----NVTTMSFAPNDEHEAQVQFALERG-VPAMIGVLGSQRLP--FPSNAFDMVHCS  188 (506)
T ss_pred             EEEeccceeehhHHHHhhC-----CceEEEcccccCCchhhhhhhhcC-cchhhhhhcccccc--CCccchhhhhcc
Confidence            6999999999999999987     46666665321 112344554443 22222221 22112  356789999764

; GO: 0008168 methyltransferase activity

>PRK12829 short chain dehydrogenase; Provisional

Probab=89.79  E-value=4.7  Score=34.66  Aligned_cols=80  Identities=19%  Similarity=0.214  Sum_probs=51.2

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc-------cCC
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVG  212 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~-------~~~  212 (264)
                      ..++.+||=.|+. |.+..++++.+ ....+|+.++.++...+++.+..... +++++..|+.+......       ...
T Consensus         8 ~~~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~   85 (264)
T PRK12829          8 PLDGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGA-KVTATVADVADPAQVERVFDTAVERFG   85 (264)
T ss_pred             ccCCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcC-ceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            4567899988886 55566555543 33457999999865544443332222 67899999988653211       124


Q ss_pred             CccEEEEcCC
Q 024665          213 MVDVIFSDVA  222 (264)
Q Consensus       213 ~fD~V~~d~p  222 (264)
                      .+|+|+....
T Consensus        86 ~~d~vi~~ag   95 (264)
T PRK12829         86 GLDVLVNNAG   95 (264)
T ss_pred             CCCEEEECCC
Confidence            6899998765

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=89.61  E-value=0.58  Score=43.69  Aligned_cols=94  Identities=13%  Similarity=0.074  Sum_probs=63.2

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHh---hcCCCeEEEEcCCCCchhhcccCCCccE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA---KKRTNVIPIIEDARHPAKYRMLVGMVDV  216 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a---~~~~nV~~i~~D~~~~~~~~~~~~~fD~  216 (264)
                      .++|+++++|++|+.+..+..++..  ....+++++.++.-+......+   ....+..++..|+.+.+   +.+..||.
T Consensus       107 ~~~~~~~~~~~~~g~~~~~~~i~~f--~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~---fedn~fd~  181 (364)
T KOG1269|consen  107 SCFPGSKVLDVGTGVGGPSRYIAVF--KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMP---FEDNTFDG  181 (364)
T ss_pred             cCcccccccccCcCcCchhHHHHHh--ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCC---CCccccCc
Confidence            4788999999999999999999987  4568999999953321111111   11223334788887755   34568898


Q ss_pred             EEEc-----CCCchHHHHHHHHHhCCC
Q 024665          217 IFSD-----VAQPDQVCFLCLILFQPI  238 (264)
Q Consensus       217 V~~d-----~p~~~~~~~~~~~~l~~~  238 (264)
                      |.+.     .|.++.........++|+
T Consensus       182 v~~ld~~~~~~~~~~~y~Ei~rv~kpG  208 (364)
T KOG1269|consen  182 VRFLEVVCHAPDLEKVYAEIYRVLKPG  208 (364)
T ss_pred             EEEEeecccCCcHHHHHHHHhcccCCC
Confidence            8643     335666666666677777

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=89.39  E-value=4  Score=34.58  Aligned_cols=79  Identities=14%  Similarity=0.147  Sum_probs=50.4

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc-------cCCCc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMV  214 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~-------~~~~f  214 (264)
                      ++++||=.|++ |.+...+++.+ ....+|+.++.++....++.+......+++++..|+++......       ....+
T Consensus         4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   82 (238)
T PRK05786          4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAI   82 (238)
T ss_pred             CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            35689999985 66666666554 33458999999865544443333323478999999988653211       12357


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |.|+.+..
T Consensus        83 d~ii~~ag   90 (238)
T PRK05786         83 DGLVVTVG   90 (238)
T ss_pred             CEEEEcCC
Confidence            98887765

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=89.17  E-value=1.1  Score=39.80  Aligned_cols=72  Identities=14%  Similarity=0.185  Sum_probs=47.5

Q ss_pred             hcccccC-CCCCCEEEEEcccCChHHHHHHHHhC----CCCEEEEEeCC-hHHHHHHHHHh-hcCCCeEEEEcCCCCch
Q 024665          134 GGVDNIW-IKPGARVLYLGAASGTTVSHVSDIVG----PNGVVYAVEFS-HRSGRDLVNMA-KKRTNVIPIIEDARHPA  205 (264)
Q Consensus       134 ~~l~~~~-l~~g~~VLDlG~G~G~~s~~la~~~~----~~g~V~avD~s-~~~~~~l~~~a-~~~~nV~~i~~D~~~~~  205 (264)
                      ..+++.. +.+...++|+|||.|.+|..+++.+.    +...++.||.. .++-.+..-.. ...+.++=+..|+.|+.
T Consensus         8 ~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~~~~~~~~~~~~~R~riDI~dl~   86 (259)
T PF05206_consen    8 GNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADNKIRKDESEPKFERLRIDIKDLD   86 (259)
T ss_pred             HHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchhhhhccCCCCceEEEEEEeeccc
Confidence            3333333 57888999999999999999999884    34579999986 44311211111 11135777788887764

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=89.16  E-value=2.4  Score=38.73  Aligned_cols=79  Identities=16%  Similarity=0.077  Sum_probs=51.8

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCC-CEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPN-GVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDV  221 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~-g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~  221 (264)
                      .+++||=.|+ +|.+..++++.+-.. -+|++++.+......+.+......+++++..|+++..........+|+|+..+
T Consensus         9 ~~~~vLVtG~-~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A   87 (353)
T PLN02896          9 ATGTYCVTGA-TGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVFHVA   87 (353)
T ss_pred             CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEEECC
Confidence            4568887775 788888888776433 37998887753322322221122478999999998754433345689998766


Q ss_pred             C
Q 024665          222 A  222 (264)
Q Consensus       222 p  222 (264)
                      .
T Consensus        88 ~   88 (353)
T PLN02896         88 A   88 (353)
T ss_pred             c
Confidence            5

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.06  E-value=1.3  Score=36.22  Aligned_cols=39  Identities=18%  Similarity=0.154  Sum_probs=31.3

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHH
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSG  181 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~  181 (264)
                      -.|-.+.+|+|+|-|.+.+..++..  .-.-+++|+++-..
T Consensus        70 ~n~~GklvDlGSGDGRiVlaaar~g--~~~a~GvELNpwLV  108 (199)
T KOG4058|consen   70 GNPKGKLVDLGSGDGRIVLAAARCG--LRPAVGVELNPWLV  108 (199)
T ss_pred             CCCCCcEEeccCCCceeehhhhhhC--CCcCCceeccHHHH
Confidence            3555689999999999999999873  33578999998653

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=88.97  E-value=0.46  Score=42.63  Aligned_cols=66  Identities=18%  Similarity=0.140  Sum_probs=47.4

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCe-EEEEcCCCCchhhcccCCCccEEEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNV-IPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV-~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      ...++.+||+|||.|-.+..     .|...+++.|++...    +.-++ +.+. .....|+.+.+.   ....||.+++
T Consensus        43 ~~~gsv~~d~gCGngky~~~-----~p~~~~ig~D~c~~l----~~~ak-~~~~~~~~~ad~l~~p~---~~~s~d~~ls  109 (293)
T KOG1331|consen   43 QPTGSVGLDVGCGNGKYLGV-----NPLCLIIGCDLCTGL----LGGAK-RSGGDNVCRADALKLPF---REESFDAALS  109 (293)
T ss_pred             cCCcceeeecccCCcccCcC-----CCcceeeecchhhhh----ccccc-cCCCceeehhhhhcCCC---CCCccccchh
Confidence            34589999999999986643     256689999999743    44443 3344 688889888652   3468998875

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=88.92  E-value=2.9  Score=38.15  Aligned_cols=136  Identities=16%  Similarity=0.212  Sum_probs=73.9

Q ss_pred             ceecceE-eCCcchHHHHHHHh----cccccCC----------CCCCEEEEEcccCChHHHHHHHHh-------------
Q 024665          114 TKVEYRI-WNPFRSKLAAAVLG----GVDNIWI----------KPGARVLYLGAASGTTVSHVSDIV-------------  165 (264)
Q Consensus       114 ~~~~yr~-~~p~~s~l~~~il~----~l~~~~l----------~~g~~VLDlG~G~G~~s~~la~~~-------------  165 (264)
                      ...-|.. |.|.+.--.+.++.    .++.+..          ++..+||-||-|.|.=...+|..+             
T Consensus        42 ~L~AYA~RWSPsRAL~Yaslf~~l~~~l~~~~~~~~~~~~~~~~~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~  121 (315)
T PF11312_consen   42 KLEAYAARWSPSRALAYASLFASLKEHLELLSCPEDESDEDEEKKSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPS  121 (315)
T ss_pred             hhhhheeccCHHHHHHHHHHHHHHHHHHHhhccccccccccccccCceEEEECCChHHHHHHHHHHHhhcccccCCcccc
Confidence            4556776 99987432222222    2222211          223699999999998777777666             


Q ss_pred             ------CCCCEEEEEeCCh--HHHHHHHHHhhcC-------------------CCeEEEEcCCCCchhhcccCCCccEEE
Q 024665          166 ------GPNGVVYAVEFSH--RSGRDLVNMAKKR-------------------TNVIPIIEDARHPAKYRMLVGMVDVIF  218 (264)
Q Consensus       166 ------~~~g~V~avD~s~--~~~~~l~~~a~~~-------------------~nV~~i~~D~~~~~~~~~~~~~fD~V~  218 (264)
                            .+...|++||+.+  .++..+.......                   .++.|.+.|+......     ...-++
T Consensus       122 ~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~~~~~~~~~~~~F~~~DvL~~~~~-----~l~~ll  196 (315)
T PF11312_consen  122 GVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANWPLIEPDRFNVSFTQQDVLSLSED-----DLKSLL  196 (315)
T ss_pred             cccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccccccCCccceeeeEEecccccCChH-----HHHHHh
Confidence                  0124899999983  3333332211111                   1788888888765421     000011


Q ss_pred             EcCCCch-HHHHHHHHHhCCC----cHHHHHHHHHHhhcchh
Q 024665          219 SDVAQPD-QVCFLCLILFQPI----VINNLQSVNNETKGGIF  255 (264)
Q Consensus       219 ~d~p~~~-~~~~~~~~~l~~~----~~~~l~~~~~~Lk~g~f  255 (264)
                      . .+.|+ ......+|.+...    +...+..+...++.|.+
T Consensus       197 ~-~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~Gsl  237 (315)
T PF11312_consen  197 G-PPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSL  237 (315)
T ss_pred             c-cchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcE
Confidence            1 11111 3455667777543    66667777777774433

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=88.84  E-value=1  Score=41.47  Aligned_cols=65  Identities=14%  Similarity=0.113  Sum_probs=47.0

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC-CCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~-~nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      .-...+|+|.|.|.++-.+..++ |  +|-+++++...+   ++.+... +.|+.+.+|..+-      ..+.|+|++
T Consensus       177 ~v~~avDvGgGiG~v~k~ll~~f-p--~ik~infdlp~v---~~~a~~~~~gV~~v~gdmfq~------~P~~daI~m  242 (342)
T KOG3178|consen  177 GVNVAVDVGGGIGRVLKNLLSKY-P--HIKGINFDLPFV---LAAAPYLAPGVEHVAGDMFQD------TPKGDAIWM  242 (342)
T ss_pred             cCceEEEcCCcHhHHHHHHHHhC-C--CCceeecCHHHH---HhhhhhhcCCcceeccccccc------CCCcCeEEE
Confidence            34789999999999999999864 3  588899995432   3333333 5688899997653      246778875

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=88.71  E-value=3  Score=37.31  Aligned_cols=35  Identities=26%  Similarity=0.245  Sum_probs=30.2

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHH
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRS  180 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~  180 (264)
                      ...+||=-|||.|.++..+|.+   .-.|.++|+|--|
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~M   90 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFM   90 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHH
Confidence            3568999999999999999988   3489999999655

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PRK06138 short chain dehydrogenase; Provisional

Probab=88.70  E-value=6.3  Score=33.58  Aligned_cols=78  Identities=12%  Similarity=0.142  Sum_probs=48.4

Q ss_pred             CCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-------CCCcc
Q 024665          144 GARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGMVD  215 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-------~~~fD  215 (264)
                      +.+||=.||. |.+..++++.+ ....+|+.++.+.....+..+......++.++..|+.+.......       ...+|
T Consensus         5 ~k~~lItG~s-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id   83 (252)
T PRK06138          5 GRVAIVTGAG-SGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARWGRLD   83 (252)
T ss_pred             CcEEEEeCCC-chHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence            4577877774 56666655543 334589999988654433333222234689999999886532111       14789


Q ss_pred             EEEEcCC
Q 024665          216 VIFSDVA  222 (264)
Q Consensus       216 ~V~~d~p  222 (264)
                      +|+.+..
T Consensus        84 ~vi~~ag   90 (252)
T PRK06138         84 VLVNNAG   90 (252)
T ss_pred             EEEECCC
Confidence            9998765

>PRK05872 short chain dehydrogenase; Provisional

Probab=88.70  E-value=5.7  Score=35.36  Aligned_cols=79  Identities=18%  Similarity=0.257  Sum_probs=48.5

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc-------cCCCc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMV  214 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~-------~~~~f  214 (264)
                      .+.+||-.|+.+|. ...+++.+ ....+|+.++.++..++++.+.......+..+..|+.+......       ..+.+
T Consensus         8 ~gk~vlItGas~gI-G~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   86 (296)
T PRK05872          8 AGKVVVVTGAARGI-GAELARRLHARGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFGGI   86 (296)
T ss_pred             CCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            46788888866554 44444433 23458999999876554444433323356677799988642211       12578


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+|+.+..
T Consensus        87 d~vI~nAG   94 (296)
T PRK05872         87 DVVVANAG   94 (296)
T ss_pred             CEEEECCC
Confidence            99998875

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=88.67  E-value=0.88  Score=44.26  Aligned_cols=75  Identities=24%  Similarity=0.240  Sum_probs=54.3

Q ss_pred             CEEEEEcccCChHHH---HHHHHhCCCCEEEEEeCChHHHHHHHHHhhc--CCCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          145 ARVLYLGAASGTTVS---HVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--RTNVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~---~la~~~~~~g~V~avD~s~~~~~~l~~~a~~--~~nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      ..|+=+|+|-|-+.-   .+|+....+-++||||.+|.++..+...+..  ...|++|..|+++..+   ..++.|++++
T Consensus       369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~a---p~eq~DI~VS  445 (649)
T KOG0822|consen  369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNA---PREQADIIVS  445 (649)
T ss_pred             EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCC---chhhccchHH
Confidence            357889999998654   4455555667899999999887666554432  2379999999998762   1368899987


Q ss_pred             cCC
Q 024665          220 DVA  222 (264)
Q Consensus       220 d~p  222 (264)
                      ...
T Consensus       446 ELL  448 (649)
T KOG0822|consen  446 ELL  448 (649)
T ss_pred             Hhh
Confidence            544

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=88.44  E-value=1.7  Score=40.41  Aligned_cols=58  Identities=19%  Similarity=0.133  Sum_probs=42.7

Q ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhC-------CCCEEEEEeCChHHHHH
Q 024665          126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVG-------PNGVVYAVEFSHRSGRD  183 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~-------~~g~V~avD~s~~~~~~  183 (264)
                      ..++..++..++++.....-.++++|+|.|.+...++....       ...+++-||.|++..+.
T Consensus        60 ella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~  124 (370)
T COG1565          60 ELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRAR  124 (370)
T ss_pred             HHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHH
Confidence            34555566666665555566899999999999998876652       25689999999977443

>PRK06940 short chain dehydrogenase; Provisional

Probab=88.25  E-value=6.6  Score=34.53  Aligned_cols=75  Identities=16%  Similarity=0.209  Sum_probs=49.0

Q ss_pred             EEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhccc------CCCccEEE
Q 024665          146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRML------VGMVDVIF  218 (264)
Q Consensus       146 ~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~------~~~fD~V~  218 (264)
                      .||=-|+  +.+..++++.+....+|+.++.++..++++.+.... ..++.++..|+.+.......      .+.+|+|+
T Consensus         4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~li   81 (275)
T PRK06940          4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPVTGLV   81 (275)
T ss_pred             EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCCCEEE
Confidence            4555554  478888888876556899999986544443333222 23688899999886432111      24689999


Q ss_pred             EcCC
Q 024665          219 SDVA  222 (264)
Q Consensus       219 ~d~p  222 (264)
                      .++.
T Consensus        82 ~nAG   85 (275)
T PRK06940         82 HTAG   85 (275)
T ss_pred             ECCC
Confidence            8876

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=88.15  E-value=1.2  Score=38.48  Aligned_cols=59  Identities=19%  Similarity=0.109  Sum_probs=38.6

Q ss_pred             CEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      -++|||||-+-...+.....+    .|++||+++.             .-.+++.|..+.+.-....++||+|.+.
T Consensus        53 lrlLEVGals~~N~~s~~~~f----dvt~IDLns~-------------~~~I~qqDFm~rplp~~~~e~FdvIs~S  111 (219)
T PF11968_consen   53 LRLLEVGALSTDNACSTSGWF----DVTRIDLNSQ-------------HPGILQQDFMERPLPKNESEKFDVISLS  111 (219)
T ss_pred             ceEEeecccCCCCcccccCce----eeEEeecCCC-------------CCCceeeccccCCCCCCcccceeEEEEE
Confidence            589999999776555444332    5999999851             1136677877743211234689998765

>PRK07454 short chain dehydrogenase; Provisional

Probab=87.95  E-value=9.8  Score=32.29  Aligned_cols=79  Identities=16%  Similarity=0.086  Sum_probs=49.9

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhccc-------CCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRML-------VGM  213 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~-------~~~  213 (264)
                      ...+||=.|+ +|.+...+++.+- ...+|+.++.++...+++.+.... ..++.++..|+++.......       ...
T Consensus         5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   83 (241)
T PRK07454          5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGC   83 (241)
T ss_pred             CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            4457888886 5666666665543 334899999986544444333222 23788999999886532111       135


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      .|+|+.++.
T Consensus        84 id~lv~~ag   92 (241)
T PRK07454         84 PDVLINNAG   92 (241)
T ss_pred             CCEEEECCC
Confidence            899998765

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=87.90  E-value=1.1  Score=39.41  Aligned_cols=39  Identities=21%  Similarity=0.146  Sum_probs=30.1

Q ss_pred             CEEEEEcccCChHHHHHHHHhCCC-------CEEEEEeCChHHHHH
Q 024665          145 ARVLYLGAASGTTVSHVSDIVGPN-------GVVYAVEFSHRSGRD  183 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~~~~-------g~V~avD~s~~~~~~  183 (264)
                      -+|+|+|+|+|.++..+++.+...       .+++-||.|+.+.+.
T Consensus        20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~   65 (252)
T PF02636_consen   20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRER   65 (252)
T ss_dssp             EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHH
T ss_pred             cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHH
Confidence            589999999999999999877632       589999999766433

; PDB: 4F3N_A 1ZKD_B.

>PRK05867 short chain dehydrogenase; Provisional

Probab=87.83  E-value=10  Score=32.57  Aligned_cols=79  Identities=18%  Similarity=0.212  Sum_probs=49.4

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhcc-------cCCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRM-------LVGM  213 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~-------~~~~  213 (264)
                      .+.+||=.|+.+|. ...+++.+ ....+|+.++.++...+++.+.... ..++.++..|+.+......       ..+.
T Consensus         8 ~~k~vlVtGas~gI-G~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   86 (253)
T PRK05867          8 HGKRALITGASTGI-GKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGG   86 (253)
T ss_pred             CCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            46789988886654 44444333 2345899999986555444443322 2368889999988653211       1247


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      +|+++.++.
T Consensus        87 id~lv~~ag   95 (253)
T PRK05867         87 IDIAVCNAG   95 (253)
T ss_pred             CCEEEECCC
Confidence            899998765

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=87.68  E-value=1.7  Score=40.67  Aligned_cols=37  Identities=27%  Similarity=0.123  Sum_probs=30.6

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHH
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRS  180 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~  180 (264)
                      -+=+.|+|+|+|.|.++..|+-..  .-.|+|||-|+.+
T Consensus       152 ~gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~  188 (476)
T KOG2651|consen  152 TGIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRL  188 (476)
T ss_pred             cCCCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHH
Confidence            344679999999999999999764  4589999999654

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=87.65  E-value=2.6  Score=38.17  Aligned_cols=77  Identities=13%  Similarity=0.088  Sum_probs=49.4

Q ss_pred             CCEEEEEcccCChHHHHHHHHhCCC---CEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          144 GARVLYLGAASGTTVSHVSDIVGPN---GVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~~~---g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      +.+||=.|+ +|.+..++++.+-..   .+|+.++.+......+.... ...+++++.+|+++..........+|+||..
T Consensus         4 ~k~vLVTGa-tG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~-~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih~   81 (324)
T TIGR03589         4 NKSILITGG-TGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKF-PAPCLRFFIGDVRDKERLTRALRGVDYVVHA   81 (324)
T ss_pred             CCEEEEeCC-CCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHh-CCCcEEEEEccCCCHHHHHHHHhcCCEEEEC
Confidence            567886665 688888887765432   47888887643222222211 1247899999999976443334568999976


Q ss_pred             CC
Q 024665          221 VA  222 (264)
Q Consensus       221 ~p  222 (264)
                      +.
T Consensus        82 Ag   83 (324)
T TIGR03589        82 AA   83 (324)
T ss_pred             cc
Confidence            54

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PRK07063 short chain dehydrogenase; Provisional

Probab=87.65  E-value=8.9  Score=33.01  Aligned_cols=79  Identities=16%  Similarity=0.243  Sum_probs=49.6

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhccc-------C
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRML-------V  211 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~-------~  211 (264)
                      .+.+||=.|+.+|. ...+++.+ ....+|+.++.++...+++.+....   ..++.++..|+.+.......       .
T Consensus         6 ~~k~vlVtGas~gI-G~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   84 (260)
T PRK07063          6 AGKVALVTGAAQGI-GAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF   84 (260)
T ss_pred             CCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            35688988886554 44444433 3345899999986554444443322   23688999999886532111       2


Q ss_pred             CCccEEEEcCC
Q 024665          212 GMVDVIFSDVA  222 (264)
Q Consensus       212 ~~fD~V~~d~p  222 (264)
                      +.+|+++.+..
T Consensus        85 g~id~li~~ag   95 (260)
T PRK07063         85 GPLDVLVNNAG   95 (260)
T ss_pred             CCCcEEEECCC
Confidence            46899998765

>PRK06139 short chain dehydrogenase; Provisional

Probab=87.60  E-value=6.3  Score=36.04  Aligned_cols=79  Identities=18%  Similarity=0.245  Sum_probs=49.3

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhccc-------CCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRML-------VGM  213 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~-------~~~  213 (264)
                      ++.+||=.|+.+| +...+++.+ ....+|+.++.++..++++.+.... ..++.++..|+.+......+       .+.
T Consensus         6 ~~k~vlITGAs~G-IG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   84 (330)
T PRK06139          6 HGAVVVITGASSG-IGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGR   84 (330)
T ss_pred             CCCEEEEcCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence            4567887777554 444444333 2345899999987655555444332 23688889999886532111       257


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      +|++|.+..
T Consensus        85 iD~lVnnAG   93 (330)
T PRK06139         85 IDVWVNNVG   93 (330)
T ss_pred             CCEEEECCC
Confidence            899998865

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=87.35  E-value=2.6  Score=42.30  Aligned_cols=76  Identities=16%  Similarity=0.032  Sum_probs=47.2

Q ss_pred             CCEEEEEcccCChHHHHHHHHh------CC-----CCEEEEEeCChHHHHHHHHHh-------------h--------c-
Q 024665          144 GARVLYLGAASGTTVSHVSDIV------GP-----NGVVYAVEFSHRSGRDLVNMA-------------K--------K-  190 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~------~~-----~g~V~avD~s~~~~~~l~~~a-------------~--------~-  190 (264)
                      .-+|||+|-|+|.-.+...+..      .+     .-+++++|..+-..+++.+..             .        . 
T Consensus        58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~  137 (662)
T PRK01747         58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC  137 (662)
T ss_pred             cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence            3589999999999777776655      12     247999997531111111100             0        0 


Q ss_pred             ------CC--CeEEEEcCCCCchhhcccCCCccEEEEcC
Q 024665          191 ------RT--NVIPIIEDARHPAKYRMLVGMVDVIFSDV  221 (264)
Q Consensus       191 ------~~--nV~~i~~D~~~~~~~~~~~~~fD~V~~d~  221 (264)
                            ..  +++.+.+|+++..+  .+...||+|++|.
T Consensus       138 ~~~~~~~~~~~l~l~~gd~~~~~~--~~~~~~d~~~lD~  174 (662)
T PRK01747        138 HRLLFDDGRVTLDLWFGDANELLP--QLDARADAWFLDG  174 (662)
T ss_pred             eEEEecCCcEEEEEEecCHHHHHH--hccccccEEEeCC
Confidence                  01  45678899887543  2335799999995

>PRK12939 short chain dehydrogenase; Provisional

Probab=87.13  E-value=9.9  Score=32.26  Aligned_cols=79  Identities=18%  Similarity=0.226  Sum_probs=49.8

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhccc-------CCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRML-------VGM  213 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~~-------~~~  213 (264)
                      ++.+||=.|+ +|.+..+++..+. ...+|+.++.+++...++.+... ...++.+++.|+.+......+       ...
T Consensus         6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   84 (250)
T PRK12939          6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGG   84 (250)
T ss_pred             CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            4677886665 6777777776553 23578999888654433333222 224789999999886532111       146


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      +|+|+.+..
T Consensus        85 id~vi~~ag   93 (250)
T PRK12939         85 LDGLVNNAG   93 (250)
T ss_pred             CCEEEECCC
Confidence            899998765

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=87.09  E-value=9.9  Score=32.42  Aligned_cols=78  Identities=13%  Similarity=0.168  Sum_probs=49.5

Q ss_pred             CCEEEEEcccCChHHHHHHHHhCC-CCEEEEEeCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhccc-------CCCc
Q 024665          144 GARVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRML-------VGMV  214 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~~-~g~V~avD~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~~-------~~~f  214 (264)
                      +.+||=.|+ +|.+..++++.+-. ..+|+.++.++...+.+..... ...+++++..|+.+.......       .+.+
T Consensus         4 ~~~vlItG~-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~   82 (258)
T PRK12429          4 GKVALVTGA-ASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFGGV   82 (258)
T ss_pred             CCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            456775555 67778887776543 3479999998655434333322 234788999999886532111       2368


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+|+.+..
T Consensus        83 d~vi~~a~   90 (258)
T PRK12429         83 DILVNNAG   90 (258)
T ss_pred             CEEEECCC
Confidence            99998765

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=86.97  E-value=3.4  Score=36.37  Aligned_cols=82  Identities=7%  Similarity=-0.073  Sum_probs=44.4

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC----CeEEEEcCCCC-ch-hhcccCCCcc
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT----NVIPIIEDARH-PA-KYRMLVGMVD  215 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~----nV~~i~~D~~~-~~-~~~~~~~~fD  215 (264)
                      .+.-++||+|.|.=.+--.+-.+.. .=..++.|+++-+++.+......++    .|+.....-.+ +. ...-..+.||
T Consensus        77 ~~~i~~LDIGvGAnCIYPliG~~eY-gwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd  155 (292)
T COG3129          77 GKNIRILDIGVGANCIYPLIGVHEY-GWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYD  155 (292)
T ss_pred             cCceEEEeeccCcccccccccceee-cceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceee
Confidence            4667899999987665444433321 1257788888655433333222222    34443332221 11 1101246899


Q ss_pred             EEEEcCCCc
Q 024665          216 VIFSDVAQP  224 (264)
Q Consensus       216 ~V~~d~p~~  224 (264)
                      +++||||..
T Consensus       156 ~tlCNPPFh  164 (292)
T COG3129         156 ATLCNPPFH  164 (292)
T ss_pred             eEecCCCcc
Confidence            999999943

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=86.88  E-value=11  Score=31.98  Aligned_cols=78  Identities=12%  Similarity=0.162  Sum_probs=48.3

Q ss_pred             CCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhccc-------CCCc
Q 024665          144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRML-------VGMV  214 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~-------~~~f  214 (264)
                      +.+||=.|+. |.+...++..+- ...+|+.++.++....++.+.... ..++.++..|+.+.......       ...+
T Consensus         3 ~~~ilItGas-~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~   81 (250)
T TIGR03206         3 DKTAIVTGGG-GGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGPV   81 (250)
T ss_pred             CCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            5678878764 555665555443 334899999886554444333222 23789999999875422111       2368


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+|+.+..
T Consensus        82 d~vi~~ag   89 (250)
T TIGR03206        82 DVLVNNAG   89 (250)
T ss_pred             CEEEECCC
Confidence            99988775

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=86.49  E-value=4.6  Score=40.05  Aligned_cols=83  Identities=18%  Similarity=0.102  Sum_probs=53.6

Q ss_pred             cCCCCCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhh----------cCCCeEEEEcCCCCchhh
Q 024665          139 IWIKPGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAK----------KRTNVIPIIEDARHPAKY  207 (264)
Q Consensus       139 ~~l~~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~----------~~~nV~~i~~D~~~~~~~  207 (264)
                      ...+.+.+||=.|+ +|.+..++++.+ ....+|++++.+...+..+.+...          ...+++++.+|+.+....
T Consensus        75 ~~~~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI  153 (576)
T PLN03209         75 LDTKDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQI  153 (576)
T ss_pred             cccCCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHH
Confidence            34778888887777 466777776554 334579999888544333322111          013689999999986543


Q ss_pred             cccCCCccEEEEcCC
Q 024665          208 RMLVGMVDVIFSDVA  222 (264)
Q Consensus       208 ~~~~~~fD~V~~d~p  222 (264)
                      ......+|+||+++.
T Consensus       154 ~~aLggiDiVVn~AG  168 (576)
T PLN03209        154 GPALGNASVVICCIG  168 (576)
T ss_pred             HHHhcCCCEEEEccc
Confidence            333467899998765

>PTZ00357 methyltransferase; Provisional

Probab=86.48  E-value=2.8  Score=42.34  Aligned_cols=77  Identities=19%  Similarity=0.302  Sum_probs=48.4

Q ss_pred             EEEEEcccCChHHHHHH---HHhCCCCEEEEEeCChHHH-HHHHHHhhc----C------CCeEEEEcCCCCchhh----
Q 024665          146 RVLYLGAASGTTVSHVS---DIVGPNGVVYAVEFSHRSG-RDLVNMAKK----R------TNVIPIIEDARHPAKY----  207 (264)
Q Consensus       146 ~VLDlG~G~G~~s~~la---~~~~~~g~V~avD~s~~~~-~~l~~~a~~----~------~nV~~i~~D~~~~~~~----  207 (264)
                      .|+=+|||-|-+.....   +..+-.-+|||||.++.++ -.+......    .      ..|++|+.|+++...-    
T Consensus       703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~  782 (1072)
T PTZ00357        703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG  782 (1072)
T ss_pred             EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence            58999999999765544   4444456899999995432 112221111    1      1389999999986421    


Q ss_pred             ----cccCCCccEEEEcCC
Q 024665          208 ----RMLVGMVDVIFSDVA  222 (264)
Q Consensus       208 ----~~~~~~fD~V~~d~p  222 (264)
                          ....+++|+||+...
T Consensus       783 s~~~P~~~gKaDIVVSELL  801 (1072)
T PTZ00357        783 SLTLPADFGLCDLIVSELL  801 (1072)
T ss_pred             cccccccccccceehHhhh
Confidence                011237999998654

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=86.45  E-value=2.7  Score=41.32  Aligned_cols=82  Identities=7%  Similarity=0.035  Sum_probs=53.9

Q ss_pred             ccCChHHHHHHHHhCCC-CEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhc-ccCCCccEEEEcCCCchHHH-
Q 024665          152 AASGTTVSHVSDIVGPN-GVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR-MLVGMVDVIFSDVAQPDQVC-  228 (264)
Q Consensus       152 ~G~G~~s~~la~~~~~~-g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~-~~~~~fD~V~~d~p~~~~~~-  228 (264)
                      ||.|.++..+++..... -.|+.+|.+++..++    ++. ..+.++++|+++....+ ...+++|.|++..+..++.. 
T Consensus       423 ~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~----~~~-~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~  497 (558)
T PRK10669        423 VGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDE----LRE-RGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE  497 (558)
T ss_pred             ECCChHHHHHHHHHHHCCCCEEEEECCHHHHHH----HHH-CCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence            67778888888876543 479999999855333    322 36889999999976432 22358998888777554432 


Q ss_pred             -HHHHHHhCCC
Q 024665          229 -FLCLILFQPI  238 (264)
Q Consensus       229 -~~~~~~l~~~  238 (264)
                       ........|.
T Consensus       498 iv~~~~~~~~~  508 (558)
T PRK10669        498 IVASAREKRPD  508 (558)
T ss_pred             HHHHHHHHCCC
Confidence             3334444444

>PRK06172 short chain dehydrogenase; Provisional

Probab=86.33  E-value=9.7  Score=32.58  Aligned_cols=79  Identities=15%  Similarity=0.198  Sum_probs=48.0

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhcc-------cCCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRM-------LVGM  213 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~-------~~~~  213 (264)
                      .+.+||=.|+.+ .+...++..+ ....+|+.++.++.-.+++.+... ...++.+++.|+.+......       ..+.
T Consensus         6 ~~k~ilItGas~-~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~   84 (253)
T PRK06172          6 SGKVALVTGGAA-GIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYGR   84 (253)
T ss_pred             CCCEEEEeCCCc-hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            456888888755 4444444333 334589999998644333333222 23478999999988642211       1246


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      +|+|+.+..
T Consensus        85 id~li~~ag   93 (253)
T PRK06172         85 LDYAFNNAG   93 (253)
T ss_pred             CCEEEECCC
Confidence            799998765

>PRK09072 short chain dehydrogenase; Provisional

Probab=86.28  E-value=8.5  Score=33.28  Aligned_cols=79  Identities=15%  Similarity=0.176  Sum_probs=48.6

Q ss_pred             CCCEEEEEcccCChHHHHHHHH-hCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc------CCCcc
Q 024665          143 PGARVLYLGAASGTTVSHVSDI-VGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML------VGMVD  215 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~-~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~------~~~fD  215 (264)
                      ++.+||=.|+.+|. ...++.. .....+|+.++.++...+++........++.++..|+.+......+      ...+|
T Consensus         4 ~~~~vlItG~s~~i-G~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id   82 (263)
T PRK09072          4 KDKRVLLTGASGGI-GQALAEALAAAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGIN   82 (263)
T ss_pred             CCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCCC
Confidence            35678888777654 4433333 2334589999998655444433322234788999999886532111      24689


Q ss_pred             EEEEcCC
Q 024665          216 VIFSDVA  222 (264)
Q Consensus       216 ~V~~d~p  222 (264)
                      +|+.+..
T Consensus        83 ~lv~~ag   89 (263)
T PRK09072         83 VLINNAG   89 (263)
T ss_pred             EEEECCC
Confidence            9998765

>PLN02214 cinnamoyl-CoA reductase

Probab=86.17  E-value=5.4  Score=36.42  Aligned_cols=80  Identities=16%  Similarity=0.175  Sum_probs=50.5

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCC-CEEEEEeCChHHHHH--HHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEE
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPN-GVVYAVEFSHRSGRD--LVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIF  218 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~-g~V~avD~s~~~~~~--l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~  218 (264)
                      ..+.+||=.|+ +|.+..++++.+-.. -+|+++..+......  +.+......+++++..|+++..........+|+||
T Consensus         8 ~~~~~vlVTGa-tGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi   86 (342)
T PLN02214          8 PAGKTVCVTGA-GGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVF   86 (342)
T ss_pred             CCCCEEEEECC-CcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence            34668887777 789998888765333 479888876432111  11111112368899999988654433345689998


Q ss_pred             EcCC
Q 024665          219 SDVA  222 (264)
Q Consensus       219 ~d~p  222 (264)
                      ..+.
T Consensus        87 h~A~   90 (342)
T PLN02214         87 HTAS   90 (342)
T ss_pred             EecC
Confidence            7765

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=85.90  E-value=9.5  Score=31.49  Aligned_cols=102  Identities=12%  Similarity=0.013  Sum_probs=56.3

Q ss_pred             EcccCChHHHHHHHHhCCCCEEEEEeCChH--HH------HHHHHHhhcCCCe-EEEEcCCCCchhhcc-cCCCccEEEE
Q 024665          150 LGAASGTTVSHVSDIVGPNGVVYAVEFSHR--SG------RDLVNMAKKRTNV-IPIIEDARHPAKYRM-LVGMVDVIFS  219 (264)
Q Consensus       150 lG~G~G~~s~~la~~~~~~g~V~avD~s~~--~~------~~l~~~a~~~~nV-~~i~~D~~~~~~~~~-~~~~fD~V~~  219 (264)
                      ||=|.=+++..|+........|+|.-++.+  +.      ...++... ..++ .....|++++..... ....||.|+.
T Consensus         3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~-~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF   81 (166)
T PF10354_consen    3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELR-ELGVTVLHGVDATKLHKHFRLKNQRFDRIIF   81 (166)
T ss_pred             eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHh-hcCCccccCCCCCcccccccccCCcCCEEEE
Confidence            444555677788888765567888877632  21      12222221 2233 345678888765421 2358999999


Q ss_pred             cCCCch------HHHHHHHHHhCCCcHHHHHHHHHHhh-cchh
Q 024665          220 DVAQPD------QVCFLCLILFQPIVINNLQSVNNETK-GGIF  255 (264)
Q Consensus       220 d~p~~~------~~~~~~~~~l~~~~~~~l~~~~~~Lk-~g~f  255 (264)
                      |-|..-      ...+.....+   +...+.++.+.|+ .|.+
T Consensus        82 NFPH~G~~~~~~~~~i~~nr~L---l~~Ff~Sa~~~L~~~G~I  121 (166)
T PF10354_consen   82 NFPHVGGGSEDGKRNIRLNREL---LRGFFKSASQLLKPDGEI  121 (166)
T ss_pred             eCCCCCCCccchhHHHHHHHHH---HHHHHHHHHHhcCCCCEE
Confidence            999543      2222222222   4555666666666 4433

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=85.77  E-value=3.1  Score=37.16  Aligned_cols=78  Identities=15%  Similarity=0.159  Sum_probs=49.1

Q ss_pred             CCEEEEEcccCChHHHHHHHHhCCC-CEEEEEeCChHHH---HHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          144 GARVLYLGAASGTTVSHVSDIVGPN-GVVYAVEFSHRSG---RDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~~~-g~V~avD~s~~~~---~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      +.+||=.|+ +|.+..++++.+-.. -+|++++.+....   ..+.......++++++.+|+++...+......+|+||.
T Consensus         4 ~~~ilVtGa-tGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih   82 (322)
T PLN02662          4 GKVVCVTGA-SGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH   82 (322)
T ss_pred             CCEEEEECC-hHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence            456776665 788888888776433 3788887763211   11111111134789999999986644334457899987


Q ss_pred             cCC
Q 024665          220 DVA  222 (264)
Q Consensus       220 d~p  222 (264)
                      .++
T Consensus        83 ~A~   85 (322)
T PLN02662         83 TAS   85 (322)
T ss_pred             eCC
Confidence            664

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=85.76  E-value=4.7  Score=34.90  Aligned_cols=84  Identities=13%  Similarity=0.234  Sum_probs=54.5

Q ss_pred             EEEEcccCChHHHHHHHHhCCCC-EEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-CCCccEEEEcCCCc
Q 024665          147 VLYLGAASGTTVSHVSDIVGPNG-VVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-VGMVDVIFSDVAQP  224 (264)
Q Consensus       147 VLDlG~G~G~~s~~la~~~~~~g-~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-~~~fD~V~~d~p~~  224 (264)
                      ++=+|  -|.+...+|+.+...+ .|+.+|.++...++   .......+.++++|+++....... ...+|++++....-
T Consensus         3 iiIiG--~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~---~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d   77 (225)
T COG0569           3 IIIIG--AGRVGRSVARELSEEGHNVVLIDRDEERVEE---FLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGND   77 (225)
T ss_pred             EEEEC--CcHHHHHHHHHHHhCCCceEEEEcCHHHHHH---HhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCC
Confidence            44444  4567777777765553 79999999754322   122234689999999997644222 45899999987765


Q ss_pred             hHHHHHHHHHh
Q 024665          225 DQVCFLCLILF  235 (264)
Q Consensus       225 ~~~~~~~~~~l  235 (264)
                      .+..+....++
T Consensus        78 ~~N~i~~~la~   88 (225)
T COG0569          78 EVNSVLALLAL   88 (225)
T ss_pred             HHHHHHHHHHH
Confidence            55555544443

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=85.75  E-value=14  Score=31.31  Aligned_cols=78  Identities=13%  Similarity=0.137  Sum_probs=49.5

Q ss_pred             CCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhccc-------CCCc
Q 024665          144 GARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRML-------VGMV  214 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~~-------~~~f  214 (264)
                      +.+||=.|+ +|.+..++++.+ ....+|+.++.++...+++.+... ...+++++..|+.+.......       .+.+
T Consensus         7 ~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   85 (239)
T PRK07666          7 GKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELGSI   85 (239)
T ss_pred             CCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcCCc
Confidence            467888886 667777766543 344589999988654433333222 223788999999886532111       2468


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+|+.+..
T Consensus        86 d~vi~~ag   93 (239)
T PRK07666         86 DILINNAG   93 (239)
T ss_pred             cEEEEcCc
Confidence            99998765

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=85.72  E-value=8.7  Score=33.30  Aligned_cols=80  Identities=11%  Similarity=0.158  Sum_probs=49.0

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhcc-------cCCCc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRM-------LVGMV  214 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~-------~~~~f  214 (264)
                      .+.+||=.|+..|.=...+.++.....+|+.++.+++.++++.+.... ..++.++..|+.+......       ....+
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   88 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVGVI   88 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence            456888888887653322223333345788888886554444433322 2368899999988653211       12468


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |.|+.+..
T Consensus        89 d~li~~ag   96 (265)
T PRK07097         89 DILVNNAG   96 (265)
T ss_pred             CEEEECCC
Confidence            99998765

>PRK07904 short chain dehydrogenase; Provisional

Probab=85.70  E-value=4  Score=35.45  Aligned_cols=81  Identities=17%  Similarity=0.102  Sum_probs=50.5

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHh-CC-CCEEEEEeCChHH-HHHHHHHhhcC--CCeEEEEcCCCCchhhc----cc-
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIV-GP-NGVVYAVEFSHRS-GRDLVNMAKKR--TNVIPIIEDARHPAKYR----ML-  210 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~-~~-~g~V~avD~s~~~-~~~l~~~a~~~--~nV~~i~~D~~~~~~~~----~~-  210 (264)
                      +..+.+||=.|| ++.+...+++.+ .. ..+|+.++.++.. .+++.+.....  .+++++..|+.+.....    .. 
T Consensus         5 ~~~~~~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~   83 (253)
T PRK07904          5 VGNPQTILLLGG-TSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAF   83 (253)
T ss_pred             cCCCcEEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHH
Confidence            445668998888 456666666553 32 2489999887542 33443333222  27899999998755311    11 


Q ss_pred             -CCCccEEEEcCC
Q 024665          211 -VGMVDVIFSDVA  222 (264)
Q Consensus       211 -~~~fD~V~~d~p  222 (264)
                       .+.+|+++.+..
T Consensus        84 ~~g~id~li~~ag   96 (253)
T PRK07904         84 AGGDVDVAIVAFG   96 (253)
T ss_pred             hcCCCCEEEEeee
Confidence             147999987765

>PRK09291 short chain dehydrogenase; Provisional

Probab=85.64  E-value=16  Score=31.17  Aligned_cols=77  Identities=16%  Similarity=-0.012  Sum_probs=48.1

Q ss_pred             CEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhccc-CCCccEEEEcC
Q 024665          145 ARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRML-VGMVDVIFSDV  221 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~-~~~fD~V~~d~  221 (264)
                      .+||=.|+ +|.+...+++.+. ...+|+++..++....++.+.... ..++.++..|+.+....... ...+|+|+.+.
T Consensus         3 ~~vlVtGa-sg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~a   81 (257)
T PRK09291          3 KTILITGA-GSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNNA   81 (257)
T ss_pred             CEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEECC
Confidence            46777777 4555666655442 345899998886444344333322 23688999999886543222 23799999875


Q ss_pred             C
Q 024665          222 A  222 (264)
Q Consensus       222 p  222 (264)
                      .
T Consensus        82 g   82 (257)
T PRK09291         82 G   82 (257)
T ss_pred             C
Confidence            4

>PRK06194 hypothetical protein; Provisional

Probab=85.62  E-value=11  Score=32.86  Aligned_cols=78  Identities=17%  Similarity=0.192  Sum_probs=48.3

Q ss_pred             CCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhccc-------CCCc
Q 024665          144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRML-------VGMV  214 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~-------~~~f  214 (264)
                      +.+||=.|+. |.+..++++.+- ...+|+.+|.++...+++.+.... ..+++++..|+.+.......       .+.+
T Consensus         6 ~k~vlVtGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~i   84 (287)
T PRK06194          6 GKVAVITGAA-SGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFGAV   84 (287)
T ss_pred             CCEEEEeCCc-cHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            4678866655 555666655443 345799999886554444333222 33688899999886432111       1357


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+|+.+..
T Consensus        85 d~vi~~Ag   92 (287)
T PRK06194         85 HLLFNNAG   92 (287)
T ss_pred             CEEEECCC
Confidence            99998876

>PRK08267 short chain dehydrogenase; Provisional

Probab=85.53  E-value=7.2  Score=33.61  Aligned_cols=75  Identities=19%  Similarity=0.150  Sum_probs=46.4

Q ss_pred             EEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc----c----CCCccE
Q 024665          146 RVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM----L----VGMVDV  216 (264)
Q Consensus       146 ~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~----~----~~~fD~  216 (264)
                      +||=.|+.. .+...+++.+- ...+|+.++.++...+++.+... ..++++++.|+.+......    .    .+++|+
T Consensus         3 ~vlItGasg-~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~   80 (260)
T PRK08267          3 SIFITGAAS-GIGRATALLFAAEGWRVGAYDINEAGLAALAAELG-AGNAWTGALDVTDRAAWDAALADFAAATGGRLDV   80 (260)
T ss_pred             EEEEeCCCc-hHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc-CCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCE
Confidence            577777664 55555554332 34589999988755444433222 3478999999988543211    1    346899


Q ss_pred             EEEcCC
Q 024665          217 IFSDVA  222 (264)
Q Consensus       217 V~~d~p  222 (264)
                      |+.++.
T Consensus        81 vi~~ag   86 (260)
T PRK08267         81 LFNNAG   86 (260)
T ss_pred             EEECCC
Confidence            998765

>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein

Probab=85.52  E-value=2.9  Score=37.24  Aligned_cols=103  Identities=17%  Similarity=0.108  Sum_probs=47.2

Q ss_pred             CCCCCCEEEEEcccCCh----HHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCcc
Q 024665          140 WIKPGARVLYLGAASGT----TVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVD  215 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~----~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD  215 (264)
                      .+...++||-+|+|+=-    =+..|.+-+.....++-.|+.+-.     .     +--..+.+|...+.    ...++|
T Consensus        58 aVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~v-----S-----Da~~~~~~Dc~t~~----~~~k~D  123 (299)
T PF06460_consen   58 AVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYV-----S-----DADQSIVGDCRTYM----PPDKFD  123 (299)
T ss_dssp             ---TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-----------SSSEEEES-GGGEE----ESS-EE
T ss_pred             eeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhc-----c-----ccCCceeccccccC----CCCccc
Confidence            46778999999998743    344555555455678888887421     1     12246778877654    457999


Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCcHHHHHHHHH-Hhh-cchhh
Q 024665          216 VIFSDVAQPDQVCFLCLILFQPIVINNLQSVNN-ETK-GGIFE  256 (264)
Q Consensus       216 ~V~~d~p~~~~~~~~~~~~l~~~~~~~l~~~~~-~Lk-~g~f~  256 (264)
                      +||+|+-.+....+...+..+.....++..+++ .|. +|.+.
T Consensus       124 lIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSva  166 (299)
T PF06460_consen  124 LIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVA  166 (299)
T ss_dssp             EEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEE
Confidence            999998743333333333344445555555544 355 55443

This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.

>PRK08339 short chain dehydrogenase; Provisional

Probab=85.49  E-value=15  Score=31.93  Aligned_cols=79  Identities=14%  Similarity=0.165  Sum_probs=48.2

Q ss_pred             CCCEEEEEcccCChHHHHHHHH-hCCCCEEEEEeCChHHHHHHHHHhhc--CCCeEEEEcCCCCchhhccc------CCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDI-VGPNGVVYAVEFSHRSGRDLVNMAKK--RTNVIPIIEDARHPAKYRML------VGM  213 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~-~~~~g~V~avD~s~~~~~~l~~~a~~--~~nV~~i~~D~~~~~~~~~~------~~~  213 (264)
                      .+.++|=.|+++|. ...+++. .....+|+.++.++..++++.+....  ..++.++..|+.+.......      .+.
T Consensus         7 ~~k~~lItGas~gI-G~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~   85 (263)
T PRK08339          7 SGKLAFTTASSKGI-GFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGE   85 (263)
T ss_pred             CCCEEEEeCCCCcH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence            46678888877665 3333333 33345899999986544443332221  23788999999986532111      146


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      +|+++.+..
T Consensus        86 iD~lv~nag   94 (263)
T PRK08339         86 PDIFFFSTG   94 (263)
T ss_pred             CcEEEECCC
Confidence            899988764

>PRK06181 short chain dehydrogenase; Provisional

Probab=85.41  E-value=11  Score=32.44  Aligned_cols=77  Identities=12%  Similarity=0.119  Sum_probs=46.4

Q ss_pred             CEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhccc-------CCCcc
Q 024665          145 ARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRML-------VGMVD  215 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~-------~~~fD  215 (264)
                      .+||=.|+ +|.+...+++.+ ....+|++++.++...+++.+.... ..++.++..|+.+.......       ...+|
T Consensus         2 ~~vlVtGa-sg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   80 (263)
T PRK06181          2 KVVIITGA-SEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGID   80 (263)
T ss_pred             CEEEEecC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            35776664 455666665443 3346899999986544443332222 23788999999886532111       13689


Q ss_pred             EEEEcCC
Q 024665          216 VIFSDVA  222 (264)
Q Consensus       216 ~V~~d~p  222 (264)
                      +|+.+..
T Consensus        81 ~vi~~ag   87 (263)
T PRK06181         81 ILVNNAG   87 (263)
T ss_pred             EEEECCC
Confidence            9998764

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=85.24  E-value=20  Score=30.45  Aligned_cols=76  Identities=13%  Similarity=0.193  Sum_probs=46.8

Q ss_pred             EEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhh-------cccCCCccE
Q 024665          146 RVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKY-------RMLVGMVDV  216 (264)
Q Consensus       146 ~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~-------~~~~~~fD~  216 (264)
                      +||=.| ++|.+..++++.+- ...+|++++.++...+.+.+... ...+++++..|+.+....       .......|+
T Consensus         3 ~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~   81 (255)
T TIGR01963         3 TALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGGLDI   81 (255)
T ss_pred             EEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCCCE
Confidence            456556 55677777765543 33479999998654433333221 223789999999886521       111246899


Q ss_pred             EEEcCC
Q 024665          217 IFSDVA  222 (264)
Q Consensus       217 V~~d~p  222 (264)
                      |+.+..
T Consensus        82 vi~~a~   87 (255)
T TIGR01963        82 LVNNAG   87 (255)
T ss_pred             EEECCC
Confidence            998764

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK06949 short chain dehydrogenase; Provisional

Probab=85.17  E-value=18  Score=30.85  Aligned_cols=79  Identities=13%  Similarity=0.143  Sum_probs=50.0

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhcc-------cCCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRM-------LVGM  213 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~-------~~~~  213 (264)
                      .+.+||=.| ++|.+..++++.+. ...+|++++.+++.++++..... ...+++++..|+.+......       ..+.
T Consensus         8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   86 (258)
T PRK06949          8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEAGT   86 (258)
T ss_pred             CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            467888888 55566666665553 33479999998655444443322 23468899999987543211       1246


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      +|+|+.+..
T Consensus        87 ~d~li~~ag   95 (258)
T PRK06949         87 IDILVNNSG   95 (258)
T ss_pred             CCEEEECCC
Confidence            899998765

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=85.06  E-value=6.1  Score=36.73  Aligned_cols=75  Identities=20%  Similarity=0.255  Sum_probs=47.3

Q ss_pred             EEEEcccCChHHHHHHHHhCCCC---EEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCCC
Q 024665          147 VLYLGAASGTTVSHVSDIVGPNG---VVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       147 VLDlG~G~G~~s~~la~~~~~~g---~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~  223 (264)
                      ||=+||  |.....+++.+....   +|+..|.+.+.++.+.+.. ...++++++.|+.+......+....|+|+.-.++
T Consensus         1 IlvlG~--G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp   77 (386)
T PF03435_consen    1 ILVLGA--GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL-LGDRVEAVQVDVNDPESLAELLRGCDVVINCAGP   77 (386)
T ss_dssp             EEEE----SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT---TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSG
T ss_pred             CEEEcC--cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc-cccceeEEEEecCCHHHHHHHHhcCCEEEECCcc
Confidence            566777  888887777664433   7999999976544433322 3458999999999876543445678999977664


Q ss_pred             c
Q 024665          224 P  224 (264)
Q Consensus       224 ~  224 (264)
                      .
T Consensus        78 ~   78 (386)
T PF03435_consen   78 F   78 (386)
T ss_dssp             G
T ss_pred             c
Confidence            3

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=85.06  E-value=2  Score=39.03  Aligned_cols=83  Identities=18%  Similarity=0.148  Sum_probs=56.2

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHH----Hhhc--CCCeEEEEcCCCCchhhcccCCCc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN----MAKK--RTNVIPIIEDARHPAKYRMLVGMV  214 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~----~a~~--~~nV~~i~~D~~~~~~~~~~~~~f  214 (264)
                      +..-++||=+|-|-|...-..+.+ ..-..+.-+|++...++-..+    ++..  .+.|....+|...+.+. ...++|
T Consensus       119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~-~~~~~~  196 (337)
T KOG1562|consen  119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLED-LKENPF  196 (337)
T ss_pred             CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHH-hccCCc
Confidence            334468999999999987777766 334578889998765433222    2211  23799999998776542 125689


Q ss_pred             cEEEEcCCCch
Q 024665          215 DVIFSDVAQPD  225 (264)
Q Consensus       215 D~V~~d~p~~~  225 (264)
                      |+|+.|...|.
T Consensus       197 dVii~dssdpv  207 (337)
T KOG1562|consen  197 DVIITDSSDPV  207 (337)
T ss_pred             eEEEEecCCcc
Confidence            99999887543

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=85.05  E-value=6.2  Score=37.29  Aligned_cols=76  Identities=13%  Similarity=0.152  Sum_probs=52.0

Q ss_pred             CCEEEEEcccCChHHHHHHHHhCC-CCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhc-ccCCCccEEEEcC
Q 024665          144 GARVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR-MLVGMVDVIFSDV  221 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~~-~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~-~~~~~fD~V~~d~  221 (264)
                      ..+||=+|+  |.++..+++.+.. ...|+.+|.+++..+++.+   ...++.++++|+++...+. .....+|.|++-.
T Consensus       231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~---~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~  305 (453)
T PRK09496        231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAE---ELPNTLVLHGDGTDQELLEEEGIDEADAFIALT  305 (453)
T ss_pred             CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH---HCCCCeEEECCCCCHHHHHhcCCccCCEEEECC
Confidence            456776666  8888888877754 3579999999865433322   2246789999998875431 2345899998866


Q ss_pred             CCc
Q 024665          222 AQP  224 (264)
Q Consensus       222 p~~  224 (264)
                      +..
T Consensus       306 ~~~  308 (453)
T PRK09496        306 NDD  308 (453)
T ss_pred             CCc
Confidence            643

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=85.04  E-value=9.1  Score=32.83  Aligned_cols=79  Identities=14%  Similarity=0.119  Sum_probs=49.2

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhcc-------cCCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRM-------LVGM  213 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~-------~~~~  213 (264)
                      ++.+||=.|+. +.+...++..+ ....+|+.++.+++.++.+.+.... ..++.++..|+.+......       ..+.
T Consensus        10 ~~k~ilItGas-~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   88 (256)
T PRK06124         10 AGQVALVTGSA-RGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEHGR   88 (256)
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            46788888864 55555555443 2346899999986554444333322 2368899999988643211       1246


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      +|+|+.++.
T Consensus        89 id~vi~~ag   97 (256)
T PRK06124         89 LDILVNNVG   97 (256)
T ss_pred             CCEEEECCC
Confidence            799998765

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=84.95  E-value=5.8  Score=34.29  Aligned_cols=76  Identities=14%  Similarity=0.149  Sum_probs=46.8

Q ss_pred             EEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc-------cCCCccEE
Q 024665          146 RVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMVDVI  217 (264)
Q Consensus       146 ~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~-------~~~~fD~V  217 (264)
                      +||=.|+++| +...+++.+ ....+|+.++.++..++++.+......++.++..|+.+......       ..+.+|+|
T Consensus         2 ~vlItGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~l   80 (259)
T PRK08340          2 NVLVTASSRG-IGFNVARELLKKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGIDAL   80 (259)
T ss_pred             eEEEEcCCcH-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            5777786654 454444443 23458999998865544444333333478899999988642211       12478999


Q ss_pred             EEcCC
Q 024665          218 FSDVA  222 (264)
Q Consensus       218 ~~d~p  222 (264)
                      +.+..
T Consensus        81 i~naG   85 (259)
T PRK08340         81 VWNAG   85 (259)
T ss_pred             EECCC
Confidence            98764

>PRK08226 short chain dehydrogenase; Provisional

Probab=84.89  E-value=15  Score=31.68  Aligned_cols=79  Identities=14%  Similarity=0.256  Sum_probs=46.9

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-------CCCc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGMV  214 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-------~~~f  214 (264)
                      ++.++|=.|+.. .+...+++.+ ....+|+.++.++...+...+......++.++..|+.+......+       ....
T Consensus         5 ~~~~~lItG~s~-giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~i   83 (263)
T PRK08226          5 TGKTALITGALQ-GIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEGRI   83 (263)
T ss_pred             CCCEEEEeCCCC-hHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            356788778754 4455444433 334579999988643222222222234688899999886432111       2468


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+|+.+..
T Consensus        84 d~vi~~ag   91 (263)
T PRK08226         84 DILVNNAG   91 (263)
T ss_pred             CEEEECCC
Confidence            99998765

>PLN02253 xanthoxin dehydrogenase

Probab=84.72  E-value=5.4  Score=34.87  Aligned_cols=79  Identities=15%  Similarity=0.192  Sum_probs=49.9

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-------CCCc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGMV  214 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-------~~~f  214 (264)
                      .+.+||=.|+. |.+..++++.+- ...+|+.++.+++..+++.+......++++++.|+.+.......       .+.+
T Consensus        17 ~~k~~lItGas-~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g~i   95 (280)
T PLN02253         17 LGKVALVTGGA-TGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKFGTL   95 (280)
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            35678888865 555666655442 34589999988655444444332234689999999986532111       1468


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+|+.++.
T Consensus        96 d~li~~Ag  103 (280)
T PLN02253         96 DIMVNNAG  103 (280)
T ss_pred             CEEEECCC
Confidence            99998764

>PRK05650 short chain dehydrogenase; Provisional

Probab=84.63  E-value=15  Score=31.82  Aligned_cols=76  Identities=14%  Similarity=0.144  Sum_probs=46.0

Q ss_pred             EEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhcc-------cCCCccE
Q 024665          146 RVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRM-------LVGMVDV  216 (264)
Q Consensus       146 ~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~-------~~~~fD~  216 (264)
                      +||=.|+ +|.+...+++.+ ....+|+.++.++.-.+++.+... ...++.++..|+.+......       ....+|+
T Consensus         2 ~vlVtGa-sggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~   80 (270)
T PRK05650          2 RVMITGA-ASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGIDV   80 (270)
T ss_pred             EEEEecC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            5676666 445555555443 334589999988654444433322 23478899999988643211       1246899


Q ss_pred             EEEcCC
Q 024665          217 IFSDVA  222 (264)
Q Consensus       217 V~~d~p  222 (264)
                      |+.+..
T Consensus        81 lI~~ag   86 (270)
T PRK05650         81 IVNNAG   86 (270)
T ss_pred             EEECCC
Confidence            998765

>PRK07576 short chain dehydrogenase; Provisional

Probab=84.59  E-value=9.7  Score=33.12  Aligned_cols=79  Identities=18%  Similarity=0.189  Sum_probs=47.8

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHh-hcCCCeEEEEcCCCCchhhcc-------cCCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMA-KKRTNVIPIIEDARHPAKYRM-------LVGM  213 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a-~~~~nV~~i~~D~~~~~~~~~-------~~~~  213 (264)
                      ++.+||=.|+ +|.+...+++.+- ...+|+.++.+++-.+++.+.. ....++.++..|+++......       ....
T Consensus         8 ~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~   86 (264)
T PRK07576          8 AGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFGP   86 (264)
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            4668888875 5566665554443 3457999998865433333222 222367888999987542211       1236


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      +|+|+.++.
T Consensus        87 iD~vi~~ag   95 (264)
T PRK07576         87 IDVLVSGAA   95 (264)
T ss_pred             CCEEEECCC
Confidence            899998763

>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=84.55  E-value=7.1  Score=34.15  Aligned_cols=62  Identities=15%  Similarity=0.049  Sum_probs=42.0

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC-CeEEEEcCCCCc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT-NVIPIIEDARHP  204 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~-nV~~i~~D~~~~  204 (264)
                      .-..+-|+++|.|+|.++-.+...  ...++.-||++++.+.-+.-.+...+ ...+.+.|+..+
T Consensus        48 ~~~~~~v~eIgPgpggitR~il~a--~~~RL~vVE~D~RFip~LQ~L~EAa~~~~~IHh~D~LR~  110 (326)
T KOG0821|consen   48 NLTNAYVYEIGPGPGGITRSILNA--DVARLLVVEKDTRFIPGLQMLSEAAPGKLRIHHGDVLRF  110 (326)
T ss_pred             ccccceeEEecCCCCchhHHHHhc--chhheeeeeeccccChHHHHHhhcCCcceEEecccccee
Confidence            445678999999999999988765  34578888988766443333222222 566667777654

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=84.41  E-value=15  Score=33.32  Aligned_cols=77  Identities=17%  Similarity=0.233  Sum_probs=57.4

Q ss_pred             CCCEEEEEcccCCh---HHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhh-------cccCC
Q 024665          143 PGARVLYLGAASGT---TVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY-------RMLVG  212 (264)
Q Consensus       143 ~g~~VLDlG~G~G~---~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~-------~~~~~  212 (264)
                      .++.||==|+|+|.   +++.+|++   .++++-+|+++....+..+...+..+++.+..|+.+....       +...+
T Consensus        37 ~g~~vLITGgg~GlGr~ialefa~r---g~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G  113 (300)
T KOG1201|consen   37 SGEIVLITGGGSGLGRLIALEFAKR---GAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEVG  113 (300)
T ss_pred             cCCEEEEeCCCchHHHHHHHHHHHh---CCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence            47899999999997   66677766   4489999999766556566555434799999999886521       22356


Q ss_pred             CccEEEEcCC
Q 024665          213 MVDVIFSDVA  222 (264)
Q Consensus       213 ~fD~V~~d~p  222 (264)
                      .+|+++.|+.
T Consensus       114 ~V~ILVNNAG  123 (300)
T KOG1201|consen  114 DVDILVNNAG  123 (300)
T ss_pred             CceEEEeccc
Confidence            8999998876

>PRK07326 short chain dehydrogenase; Provisional

Probab=84.09  E-value=7.5  Score=32.81  Aligned_cols=79  Identities=16%  Similarity=0.184  Sum_probs=50.3

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc-------cCCCc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMV  214 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~-------~~~~f  214 (264)
                      ++.+||=.|+ +|.+...++..+- ...+|++++.++...+++.+.......++++..|+.+......       ....+
T Consensus         5 ~~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   83 (237)
T PRK07326          5 KGKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGGL   83 (237)
T ss_pred             CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            3567888885 7777777766553 2358999998875544443332222568899999987643211       11368


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+|+....
T Consensus        84 d~vi~~ag   91 (237)
T PRK07326         84 DVLIANAG   91 (237)
T ss_pred             CEEEECCC
Confidence            99997654

>PRK08324 short chain dehydrogenase; Validated

Probab=84.04  E-value=8.3  Score=38.94  Aligned_cols=79  Identities=15%  Similarity=0.187  Sum_probs=49.0

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-------CCCc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGMV  214 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-------~~~f  214 (264)
                      ++.+||=.|+.. .+...++..+. ...+|+.+|.++...+.+.+......++.++..|+++.......       .+.+
T Consensus       421 ~gk~vLVTGasg-gIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~i  499 (681)
T PRK08324        421 AGKVALVTGAAG-GIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGGV  499 (681)
T ss_pred             CCCEEEEecCCC-HHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            567888887754 45555544432 33589999999654434333222224788999999886532111       2368


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+||.+..
T Consensus       500 DvvI~~AG  507 (681)
T PRK08324        500 DIVVSNAG  507 (681)
T ss_pred             CEEEECCC
Confidence            99998765

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=83.89  E-value=4.5  Score=34.60  Aligned_cols=61  Identities=18%  Similarity=0.322  Sum_probs=44.6

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHh---CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCch
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIV---GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPA  205 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~---~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~  205 (264)
                      ++| +.|++.|...|..++..|..+   +...+|+++|++.+..   -..+...+.|.+++++-+++.
T Consensus        68 ~~P-~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~---~p~a~e~p~i~f~egss~dpa  131 (237)
T COG3510          68 LQP-SLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPL---DPAAREVPDILFIEGSSTDPA  131 (237)
T ss_pred             cCC-ceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcC---ChhhhcCCCeEEEeCCCCCHH
Confidence            455 589999999999888887665   3345899999995331   112222568999999999875

>PRK08589 short chain dehydrogenase; Validated

Probab=83.74  E-value=11  Score=32.98  Aligned_cols=78  Identities=18%  Similarity=0.218  Sum_probs=47.0

Q ss_pred             CCCEEEEEcccCChHHHHHHHH-hCCCCEEEEEeCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhcc-------cCCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDI-VGPNGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRM-------LVGM  213 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~-~~~~g~V~avD~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~-------~~~~  213 (264)
                      .+.+||=.|+..|. ...++.. .....+|+.++.+++. +++++... ...++.++..|+.+......       ..+.
T Consensus         5 ~~k~vlItGas~gI-G~aia~~l~~~G~~vi~~~r~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~   82 (272)
T PRK08589          5 ENKVAVITGASTGI-GQASAIALAQEGAYVLAVDIAEAV-SETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFGR   82 (272)
T ss_pred             CCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEeCcHHH-HHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence            45678878877655 4444433 3334689999988433 33333222 22368899999988643211       1246


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      +|+++.++.
T Consensus        83 id~li~~Ag   91 (272)
T PRK08589         83 VDVLFNNAG   91 (272)
T ss_pred             cCEEEECCC
Confidence            899998865

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=83.58  E-value=10  Score=35.81  Aligned_cols=74  Identities=16%  Similarity=0.295  Sum_probs=49.7

Q ss_pred             EEEEEcccCChHHHHHHHHhCC-CCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-CCCccEEEEcCCC
Q 024665          146 RVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-VGMVDVIFSDVAQ  223 (264)
Q Consensus       146 ~VLDlG~G~G~~s~~la~~~~~-~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-~~~fD~V~~d~p~  223 (264)
                      +|+=+||  |.++..+++.+.. ...|+.+|.+++..+.+    .....+.++.+|+++....... ...+|.|++-.+.
T Consensus         2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~----~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~   75 (453)
T PRK09496          2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRL----QDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDS   75 (453)
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHH----HhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCC
Confidence            4555554  8999999987654 34799999997543322    2223688999999876543223 4579999987664


Q ss_pred             ch
Q 024665          224 PD  225 (264)
Q Consensus       224 ~~  225 (264)
                      .+
T Consensus        76 ~~   77 (453)
T PRK09496         76 DE   77 (453)
T ss_pred             hH
Confidence            33

>PRK07677 short chain dehydrogenase; Provisional

Probab=83.30  E-value=15  Score=31.55  Aligned_cols=77  Identities=16%  Similarity=0.207  Sum_probs=46.6

Q ss_pred             CEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhcc-------cCCCcc
Q 024665          145 ARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRM-------LVGMVD  215 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~-------~~~~fD  215 (264)
                      .++|=.|++.| +..++++.+ ....+|+.++.++...+++.+.... ..++.++..|+.+......       ..+.+|
T Consensus         2 k~~lItG~s~g-iG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   80 (252)
T PRK07677          2 KVVIITGGSSG-MGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRID   80 (252)
T ss_pred             CEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCcc
Confidence            56787777655 444444333 2345899999886544444333322 2478899999988643211       124689


Q ss_pred             EEEEcCC
Q 024665          216 VIFSDVA  222 (264)
Q Consensus       216 ~V~~d~p  222 (264)
                      .|+.+..
T Consensus        81 ~lI~~ag   87 (252)
T PRK07677         81 ALINNAA   87 (252)
T ss_pred             EEEECCC
Confidence            9998764

>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]

Probab=83.12  E-value=0.71  Score=40.09  Aligned_cols=93  Identities=13%  Similarity=0.066  Sum_probs=58.5

Q ss_pred             chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHH---HHHHHHHhhcCCCeEEEEcCC
Q 024665          125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRS---GRDLVNMAKKRTNVIPIIEDA  201 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~---~~~l~~~a~~~~nV~~i~~D~  201 (264)
                      .+-++.+++..|+   +.++...+|+--|.|.-|..+.+.. ++.++||.|.+|-+   ++.+.+ ....+.++++.+..
T Consensus        28 VPVm~devl~~ls---pv~g~sf~DmTfGagGHt~~ilqk~-se~k~yalDrDP~A~~La~~~s~-el~~~~l~a~Lg~F  102 (303)
T KOG2782|consen   28 VPVMLDEVLDILS---PVRGRSFVDMTFGAGGHTSSILQKH-SELKNYALDRDPVARKLAHFHSD-ELMHPTLKAVLGNF  102 (303)
T ss_pred             CceehhhHHHHcC---CCCCceEEEEeccCCcchHHHHHhC-cHhhhhhhccChHHHHHHHHhhH-hhcchhHHHHHhhh
Confidence            3456666666665   7889999999999999999999885 57789999999744   222221 11112333333333


Q ss_pred             CCchhh----cccCCCccEEEEcCC
Q 024665          202 RHPAKY----RMLVGMVDVIFSDVA  222 (264)
Q Consensus       202 ~~~~~~----~~~~~~fD~V~~d~p  222 (264)
                      .+.++.    ...+..||-|++|.-
T Consensus       103 s~~~~l~~~~gl~~~~vDGiLmDlG  127 (303)
T KOG2782|consen  103 SYIKSLIADTGLLDVGVDGILMDLG  127 (303)
T ss_pred             HHHHHHHHHhCCCcCCcceEEeecC
Confidence            332211    123457888888755

>PRK07109 short chain dehydrogenase; Provisional

Probab=83.08  E-value=13  Score=33.82  Aligned_cols=79  Identities=10%  Similarity=0.119  Sum_probs=48.8

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhccc-------CCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRML-------VGM  213 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~-------~~~  213 (264)
                      .+.+||=.|+.+ .+...+++.+ ....+|+.++.++..++++.+.... ..++.++..|+.+.......       .+.
T Consensus         7 ~~k~vlITGas~-gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~   85 (334)
T PRK07109          7 GRQVVVITGASA-GVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELGP   85 (334)
T ss_pred             CCCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCCC
Confidence            356788777655 4555554433 2345899999886554444433322 23788999999886532111       247


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      +|+++.+..
T Consensus        86 iD~lInnAg   94 (334)
T PRK07109         86 IDTWVNNAM   94 (334)
T ss_pred             CCEEEECCC
Confidence            899998765

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=82.63  E-value=2.4  Score=37.60  Aligned_cols=46  Identities=22%  Similarity=0.117  Sum_probs=35.9

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHh
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA  188 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a  188 (264)
                      .-.+++.|||--+|+|++.+++...-   -..+++|+++...+...+..
T Consensus       219 ~s~~~diVlDpf~GsGtt~~aa~~~~---r~~ig~e~~~~y~~~~~~r~  264 (302)
T COG0863         219 YSFPGDIVLDPFAGSGTTGIAAKNLG---RRFIGIEINPEYVEVALKRL  264 (302)
T ss_pred             cCCCCCEEeecCCCCChHHHHHHHcC---CceEEEecCHHHHHHHHHHH
Confidence            56899999999999999998887762   37899999986654444433

>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component

Probab=82.61  E-value=2.7  Score=31.38  Aligned_cols=55  Identities=15%  Similarity=0.102  Sum_probs=34.2

Q ss_pred             EEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665          146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       146 ~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      +|| +.||+|..|+.++..+.                +.++..  .-++++.+.+..+...   ....+|+|++-|.
T Consensus         5 ~IL-l~C~~G~sSS~l~~k~~----------------~~~~~~--gi~~~v~a~~~~~~~~---~~~~~Dvill~pq   59 (95)
T TIGR00853         5 NIL-LLCAAGMSTSLLVNKMN----------------KAAEEY--GVPVKIAAGSYGAAGE---KLDDADVVLLAPQ   59 (95)
T ss_pred             EEE-EECCCchhHHHHHHHHH----------------HHHHHC--CCcEEEEEecHHHHHh---hcCCCCEEEECch
Confidence            566 89999999888886642                212211  2256666666655442   2357899987654

Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.

>PRK12937 short chain dehydrogenase; Provisional

Probab=82.61  E-value=19  Score=30.38  Aligned_cols=79  Identities=14%  Similarity=0.146  Sum_probs=45.6

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCC-CCEEEEEeCC-hHHHHHHHHHhh-cCCCeEEEEcCCCCchhhcc-------cCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFS-HRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRM-------LVG  212 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~-~g~V~avD~s-~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~-------~~~  212 (264)
                      ++.+||=.|+. |.+..++++.+-. ..+|+.+..+ +...+++.+... ...++.++..|+.+......       ..+
T Consensus         4 ~~~~vlItG~~-~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   82 (245)
T PRK12937          4 SNKVAIVTGAS-RGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAFG   82 (245)
T ss_pred             CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            45678888874 6666666655433 3467666554 322223333222 23478999999988643211       124


Q ss_pred             CccEEEEcCC
Q 024665          213 MVDVIFSDVA  222 (264)
Q Consensus       213 ~fD~V~~d~p  222 (264)
                      .+|+|+.++.
T Consensus        83 ~id~vi~~ag   92 (245)
T PRK12937         83 RIDVLVNNAG   92 (245)
T ss_pred             CCCEEEECCC
Confidence            6899998765

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=82.51  E-value=22  Score=30.01  Aligned_cols=79  Identities=14%  Similarity=0.178  Sum_probs=48.2

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHH-hhcCCCeEEEEcCCCCchhhccc-------CCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNM-AKKRTNVIPIIEDARHPAKYRML-------VGM  213 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~-a~~~~nV~~i~~D~~~~~~~~~~-------~~~  213 (264)
                      .+.+||=.|+ +|.+..+++..+- ...+|++++.++.....+.+. .....++.++..|+.+.......       .+.
T Consensus         5 ~~~~ilItGa-sg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   83 (251)
T PRK12826          5 EGRVALVTGA-ARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFGR   83 (251)
T ss_pred             CCCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            3567886665 5666666665442 234799999885433333322 22234689999999886432111       136


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      +|+|+..+.
T Consensus        84 ~d~vi~~ag   92 (251)
T PRK12826         84 LDILVANAG   92 (251)
T ss_pred             CCEEEECCC
Confidence            899998875

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=82.49  E-value=21  Score=30.43  Aligned_cols=78  Identities=14%  Similarity=0.227  Sum_probs=47.2

Q ss_pred             CCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhcc-------cCCCc
Q 024665          144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRM-------LVGMV  214 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~-------~~~~f  214 (264)
                      +.+||=.| ++|.+..+++..+- ....|+.++.++...+++.+.... ..++.+++.|+.+......       ....+
T Consensus         7 ~~~vlItG-asg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~   85 (262)
T PRK13394          7 GKTAVVTG-AASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFGSV   85 (262)
T ss_pred             CCEEEEEC-CCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            55777554 45566666665443 334799999986544343333222 2368889999988653211       12458


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+|+.+..
T Consensus        86 d~vi~~ag   93 (262)
T PRK13394         86 DILVSNAG   93 (262)
T ss_pred             CEEEECCc
Confidence            99988765

>PRK07102 short chain dehydrogenase; Provisional

Probab=82.46  E-value=17  Score=30.91  Aligned_cols=77  Identities=14%  Similarity=0.148  Sum_probs=47.1

Q ss_pred             CEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhc--CCCeEEEEcCCCCchhhcc----cCCCccEE
Q 024665          145 ARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKK--RTNVIPIIEDARHPAKYRM----LVGMVDVI  217 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~--~~nV~~i~~D~~~~~~~~~----~~~~fD~V  217 (264)
                      ++||=.|+. |.+...++..+- ...+|++++.++.-.+++.+....  ..++++++.|+.+......    ....+|+|
T Consensus         2 ~~vlItGas-~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~v   80 (243)
T PRK07102          2 KKILIIGAT-SDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDIV   80 (243)
T ss_pred             cEEEEEcCC-cHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCEE
Confidence            367777754 566666555543 334899999986543333332222  2479999999998653211    12357999


Q ss_pred             EEcCC
Q 024665          218 FSDVA  222 (264)
Q Consensus       218 ~~d~p  222 (264)
                      +.+..
T Consensus        81 v~~ag   85 (243)
T PRK07102         81 LIAVG   85 (243)
T ss_pred             EECCc
Confidence            98754

>PRK06182 short chain dehydrogenase; Validated

Probab=82.34  E-value=18  Score=31.51  Aligned_cols=73  Identities=22%  Similarity=0.226  Sum_probs=46.9

Q ss_pred             CCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-------CCCcc
Q 024665          144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGMVD  215 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-------~~~fD  215 (264)
                      +.+||=.|| +|.+..++++.+- ...+|++++.++..++++   .  ..+++++..|+.+.......       ...+|
T Consensus         3 ~k~vlItGa-sggiG~~la~~l~~~G~~V~~~~r~~~~l~~~---~--~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id   76 (273)
T PRK06182          3 KKVALVTGA-SSGIGKATARRLAAQGYTVYGAARRVDKMEDL---A--SLGVHPLSLDVTDEASIKAAVDTIIAEEGRID   76 (273)
T ss_pred             CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH---H--hCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence            457887775 5556777766553 345899999886443222   1  12588999999886532111       23689


Q ss_pred             EEEEcCC
Q 024665          216 VIFSDVA  222 (264)
Q Consensus       216 ~V~~d~p  222 (264)
                      +|+.++.
T Consensus        77 ~li~~ag   83 (273)
T PRK06182         77 VLVNNAG   83 (273)
T ss_pred             EEEECCC
Confidence            9998875

>PRK07024 short chain dehydrogenase; Provisional

Probab=82.31  E-value=6.5  Score=33.93  Aligned_cols=77  Identities=16%  Similarity=0.147  Sum_probs=47.5

Q ss_pred             CEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc-------cCCCccE
Q 024665          145 ARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMVDV  216 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~-------~~~~fD~  216 (264)
                      .+||=.|+ ++.+...+++.+. ...+|+.++.+++.++++.+......++.++..|+++......       ..+.+|+
T Consensus         3 ~~vlItGa-s~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id~   81 (257)
T PRK07024          3 LKVFITGA-SSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGLPDV   81 (257)
T ss_pred             CEEEEEcC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCCCE
Confidence            46777776 4555555555443 3348999999865544443333222278999999998653211       1235899


Q ss_pred             EEEcCC
Q 024665          217 IFSDVA  222 (264)
Q Consensus       217 V~~d~p  222 (264)
                      |+.+..
T Consensus        82 lv~~ag   87 (257)
T PRK07024         82 VIANAG   87 (257)
T ss_pred             EEECCC
Confidence            998765

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=82.23  E-value=7.4  Score=33.04  Aligned_cols=79  Identities=6%  Similarity=0.103  Sum_probs=48.6

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhcc-------cCCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRM-------LVGM  213 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~-------~~~~  213 (264)
                      ++.++|=.|+ +|.+...+++.+. ....|+.++.++...+++.+.... ..++.+++.|+.+......       ....
T Consensus         4 ~~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (253)
T PRK08217          4 KDKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFGQ   82 (253)
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4668888886 4555555655442 335799999986544343333222 3478899999987542210       1146


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      +|+|+.++.
T Consensus        83 id~vi~~ag   91 (253)
T PRK08217         83 LNGLINNAG   91 (253)
T ss_pred             CCEEEECCC
Confidence            899998765

>PRK08643 acetoin reductase; Validated

Probab=82.08  E-value=25  Score=30.06  Aligned_cols=77  Identities=13%  Similarity=0.168  Sum_probs=46.3

Q ss_pred             CEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhcc-------cCCCcc
Q 024665          145 ARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRM-------LVGMVD  215 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~-------~~~~fD  215 (264)
                      .+||=.|+.+| +..++++.+- ...+|+.++.++...+.+.+... ...++.++..|+.+......       ..+.+|
T Consensus         3 k~~lItGas~g-iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   81 (256)
T PRK08643          3 KVALVTGAGQG-IGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDLN   81 (256)
T ss_pred             CEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence            46776665544 5555554442 34589999988654434333222 22368889999998653211       124689


Q ss_pred             EEEEcCC
Q 024665          216 VIFSDVA  222 (264)
Q Consensus       216 ~V~~d~p  222 (264)
                      +|+.+..
T Consensus        82 ~vi~~ag   88 (256)
T PRK08643         82 VVVNNAG   88 (256)
T ss_pred             EEEECCC
Confidence            9998764

>PRK08862 short chain dehydrogenase; Provisional

Probab=82.08  E-value=28  Score=29.69  Aligned_cols=79  Identities=13%  Similarity=0.079  Sum_probs=49.0

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhccc-------CC-C
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRML-------VG-M  213 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~-------~~-~  213 (264)
                      .+.++|=.|+++|.=...+..+.....+|+.++.++..++++.+.... ...+..+..|..+......+       .+ .
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~   83 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFNRA   83 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            356889899888773222222333456899998887655554443322 23577788888876532111       14 7


Q ss_pred             ccEEEEcC
Q 024665          214 VDVIFSDV  221 (264)
Q Consensus       214 fD~V~~d~  221 (264)
                      +|+++.+.
T Consensus        84 iD~li~na   91 (227)
T PRK08862         84 PDVLVNNW   91 (227)
T ss_pred             CCEEEECC
Confidence            89999886

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=81.99  E-value=19  Score=30.78  Aligned_cols=79  Identities=14%  Similarity=0.119  Sum_probs=50.4

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhcc-------cCCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRM-------LVGM  213 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~-------~~~~  213 (264)
                      .+.+||=.|+ +|.+...+++.+- ...+|+.++.++...+++.+.... ..++.++..|+.+......       ....
T Consensus         9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   87 (255)
T PRK07523          9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIGP   87 (255)
T ss_pred             CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            4678998885 5666666665543 345899999886554444333322 2358889999988653211       1246


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      +|+|+.++.
T Consensus        88 ~d~li~~ag   96 (255)
T PRK07523         88 IDILVNNAG   96 (255)
T ss_pred             CCEEEECCC
Confidence            899998775

>PRK08265 short chain dehydrogenase; Provisional

Probab=81.92  E-value=13  Score=32.22  Aligned_cols=77  Identities=17%  Similarity=0.170  Sum_probs=47.0

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc-------cCCCc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMV  214 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~-------~~~~f  214 (264)
                      .+.+||=.|+.+ .+...+++.+- ...+|+.++.++...+++.+..  ..++++++.|+.+......       ....+
T Consensus         5 ~~k~vlItGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i   81 (261)
T PRK08265          5 AGKVAIVTGGAT-LIGAAVARALVAAGARVAIVDIDADNGAAVAASL--GERARFIATDITDDAAIERAVATVVARFGRV   81 (261)
T ss_pred             CCCEEEEECCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--CCeeEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence            356788777655 45555554432 3458999999865433333222  2368899999988643211       12468


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+++.+..
T Consensus        82 d~lv~~ag   89 (261)
T PRK08265         82 DILVNLAC   89 (261)
T ss_pred             CEEEECCC
Confidence            99998765

>PRK06180 short chain dehydrogenase; Provisional

Probab=81.91  E-value=16  Score=32.00  Aligned_cols=76  Identities=13%  Similarity=0.121  Sum_probs=47.3

Q ss_pred             CCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-------CCCcc
Q 024665          144 GARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGMVD  215 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-------~~~fD  215 (264)
                      +.+||=.||.+ .+..++++.+ ....+|++++.++...+.+.+..  ..++.++..|+.+.......       .+.+|
T Consensus         4 ~~~vlVtGasg-giG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~--~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~d   80 (277)
T PRK06180          4 MKTWLITGVSS-GFGRALAQAALAAGHRVVGTVRSEAARADFEALH--PDRALARLLDVTDFDAIDAVVADAEATFGPID   80 (277)
T ss_pred             CCEEEEecCCC-hHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhc--CCCeeEEEccCCCHHHHHHHHHHHHHHhCCCC
Confidence            45688777755 5555555544 23458999999875544433322  23688899999886532111       13589


Q ss_pred             EEEEcCC
Q 024665          216 VIFSDVA  222 (264)
Q Consensus       216 ~V~~d~p  222 (264)
                      +|+.+..
T Consensus        81 ~vv~~ag   87 (277)
T PRK06180         81 VLVNNAG   87 (277)
T ss_pred             EEEECCC
Confidence            9998765

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=81.86  E-value=8.3  Score=32.74  Aligned_cols=78  Identities=14%  Similarity=0.197  Sum_probs=47.4

Q ss_pred             CCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-------CCCcc
Q 024665          144 GARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGMVD  215 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-------~~~fD  215 (264)
                      +.+||=.|+.. .+..++++.+ ....+|+.++.++.-.+++........++.++..|+.+.......       ...+|
T Consensus         5 ~~~vlItGasg-~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   83 (251)
T PRK07231          5 GKVAIVTGASS-GIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERFGSVD   83 (251)
T ss_pred             CcEEEEECCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence            45777777654 4444444433 234579999999654434333322234688999999886543111       13689


Q ss_pred             EEEEcCC
Q 024665          216 VIFSDVA  222 (264)
Q Consensus       216 ~V~~d~p  222 (264)
                      +|+.+..
T Consensus        84 ~vi~~ag   90 (251)
T PRK07231         84 ILVNNAG   90 (251)
T ss_pred             EEEECCC
Confidence            9998765

>PRK07062 short chain dehydrogenase; Provisional

Probab=81.80  E-value=12  Score=32.22  Aligned_cols=79  Identities=13%  Similarity=0.122  Sum_probs=48.1

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcc-------cC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRM-------LV  211 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~-------~~  211 (264)
                      .+.++|=.|+.+|. ...+++.+ ....+|+.++.++...++..+....   ..++.++..|+.+......       ..
T Consensus         7 ~~k~~lItGas~gi-G~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   85 (265)
T PRK07062          7 EGRVAVVTGGSSGI-GLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF   85 (265)
T ss_pred             CCCEEEEeCCCchH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence            46788888876654 33444333 3346899999986544333332222   1368889999988653211       12


Q ss_pred             CCccEEEEcCC
Q 024665          212 GMVDVIFSDVA  222 (264)
Q Consensus       212 ~~fD~V~~d~p  222 (264)
                      +.+|+++.++.
T Consensus        86 g~id~li~~Ag   96 (265)
T PRK07062         86 GGVDMLVNNAG   96 (265)
T ss_pred             CCCCEEEECCC
Confidence            46899998765

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=81.71  E-value=1.8  Score=38.80  Aligned_cols=38  Identities=21%  Similarity=0.071  Sum_probs=30.7

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHH
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSG  181 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~  181 (264)
                      -.+.+|||+|||++...+.+...  ....|...|++...+
T Consensus       115 ~~~k~vLELgCg~~Lp~i~~~~~--~~~~~~fqD~na~vl  152 (282)
T KOG2920|consen  115 FSGKRVLELGCGAALPGIFAFVK--GAVSVHFQDFNAEVL  152 (282)
T ss_pred             ecCceeEecCCcccccchhhhhh--ccceeeeEecchhhe
Confidence            46789999999999999988766  346788889886553

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=81.69  E-value=5.7  Score=39.78  Aligned_cols=87  Identities=15%  Similarity=0.120  Sum_probs=53.6

Q ss_pred             CEEEEEcccCChHHHHHHHHhCCC-CEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhc-ccCCCccEEEEcCC
Q 024665          145 ARVLYLGAASGTTVSHVSDIVGPN-GVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR-MLVGMVDVIFSDVA  222 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~~~~-g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~-~~~~~fD~V~~d~p  222 (264)
                      .+|+=  ||-|.++..+++..... -.++.+|.+++..+.+    ++ ....++.+|++++...+ .-.+.+|+|++-..
T Consensus       401 ~~vII--~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~----~~-~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~  473 (621)
T PRK03562        401 PRVII--AGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETL----RK-FGMKVFYGDATRMDLLESAGAAKAEVLINAID  473 (621)
T ss_pred             CcEEE--EecChHHHHHHHHHHhCCCCEEEEECCHHHHHHH----Hh-cCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeC
Confidence            45655  45566777777655433 3799999998654333    22 35789999999976432 22357899998776


Q ss_pred             CchHHHHH--HHHHhCCC
Q 024665          223 QPDQVCFL--CLILFQPI  238 (264)
Q Consensus       223 ~~~~~~~~--~~~~l~~~  238 (264)
                      .++.....  ..+.+.|.
T Consensus       474 d~~~n~~i~~~ar~~~p~  491 (621)
T PRK03562        474 DPQTSLQLVELVKEHFPH  491 (621)
T ss_pred             CHHHHHHHHHHHHHhCCC
Confidence            55443332  33344454

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=81.42  E-value=9  Score=33.23  Aligned_cols=80  Identities=16%  Similarity=0.203  Sum_probs=49.1

Q ss_pred             CCCEEEEEcccCC-hHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc-------cCCC
Q 024665          143 PGARVLYLGAASG-TTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGM  213 (264)
Q Consensus       143 ~g~~VLDlG~G~G-~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~-------~~~~  213 (264)
                      .+.+||=.|+++| .+...+|+.+- ...+|+.++.+.+..+.+.+.+.....+.++..|+.+......       ..+.
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   88 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEWGR   88 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHcCC
Confidence            4678999999873 66666665543 2357888888754322222322222345678899988643211       1246


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      +|+++.++.
T Consensus        89 ld~lv~nAg   97 (258)
T PRK07533         89 LDFLLHSIA   97 (258)
T ss_pred             CCEEEEcCc
Confidence            899998864

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=81.03  E-value=32  Score=29.47  Aligned_cols=78  Identities=12%  Similarity=0.188  Sum_probs=45.8

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHh-hcCCCeEEEEcCCCCchhhccc-------CCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMA-KKRTNVIPIIEDARHPAKYRML-------VGM  213 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a-~~~~nV~~i~~D~~~~~~~~~~-------~~~  213 (264)
                      .+.+||=.|+++|. ...+++.+ ....+|+.++.+... +++.+.. ....++.++..|+.+.......       .+.
T Consensus        14 ~~k~vlItGas~gI-G~~ia~~l~~~G~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~   91 (258)
T PRK06935         14 DGKVAIVTGGNTGL-GQGYAVALAKAGADIIITTHGTNW-DETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEFGK   91 (258)
T ss_pred             CCCEEEEeCCCchH-HHHHHHHHHHCCCEEEEEeCCcHH-HHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            46789988886654 44444333 334578888777322 2222222 1234688999999886532111       236


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      +|+|+.+..
T Consensus        92 id~li~~ag  100 (258)
T PRK06935         92 IDILVNNAG  100 (258)
T ss_pred             CCEEEECCC
Confidence            899998764

>PRK06701 short chain dehydrogenase; Provisional

Probab=80.95  E-value=16  Score=32.43  Aligned_cols=79  Identities=18%  Similarity=0.226  Sum_probs=45.3

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCCh-HHHHHHHHHhhc-CCCeEEEEcCCCCchhhccc-------CC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSH-RSGRDLVNMAKK-RTNVIPIIEDARHPAKYRML-------VG  212 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~-~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~-------~~  212 (264)
                      ++.+||=.|++.| +...++..+ ....+|+.++.+. ...+.+.+.... ..++.++..|+.+......+       ..
T Consensus        45 ~~k~iLItGasgg-IG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~  123 (290)
T PRK06701         45 KGKVALITGGDSG-IGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELG  123 (290)
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4667888887554 455544433 2345788888763 222222222221 23688999999885532111       13


Q ss_pred             CccEEEEcCC
Q 024665          213 MVDVIFSDVA  222 (264)
Q Consensus       213 ~fD~V~~d~p  222 (264)
                      .+|+|+.++.
T Consensus       124 ~iD~lI~~Ag  133 (290)
T PRK06701        124 RLDILVNNAA  133 (290)
T ss_pred             CCCEEEECCc
Confidence            6899997754

>PRK06914 short chain dehydrogenase; Provisional

Probab=80.88  E-value=25  Score=30.55  Aligned_cols=78  Identities=15%  Similarity=0.132  Sum_probs=46.7

Q ss_pred             CCEEEEEcccCChHHHHHHHH-hCCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcc------cCCC
Q 024665          144 GARVLYLGAASGTTVSHVSDI-VGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRM------LVGM  213 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~-~~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~------~~~~  213 (264)
                      +.+||=.|+..+ +...+++. .....+|++++.++...+++.+....   ..+++++..|+.+......      ....
T Consensus         3 ~k~~lItGasg~-iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~   81 (280)
T PRK06914          3 KKIAIVTGASSG-FGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR   81 (280)
T ss_pred             CCEEEEECCCch-HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence            346777775554 45554433 33445899999886544443332221   2378999999998653211      1246


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      +|+|+.++.
T Consensus        82 id~vv~~ag   90 (280)
T PRK06914         82 IDLLVNNAG   90 (280)
T ss_pred             eeEEEECCc
Confidence            799998765

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=80.79  E-value=1.2  Score=41.45  Aligned_cols=38  Identities=26%  Similarity=0.281  Sum_probs=29.5

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChH
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHR  179 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~  179 (264)
                      +.|. .|||+|+|+|+-..++-+.+..-..++-+|.|+.
T Consensus       112 fapq-siLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~  149 (484)
T COG5459         112 FAPQ-SILDVGAGPGTGLWALNDIWPDLKSAVILEASPA  149 (484)
T ss_pred             cCcc-hhhccCCCCchhhhhhcccCCCchhhhhhccCHH
Confidence            4443 4999999999998888888754456888888863

>PRK06125 short chain dehydrogenase; Provisional

Probab=80.61  E-value=30  Score=29.72  Aligned_cols=79  Identities=18%  Similarity=0.207  Sum_probs=48.7

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhc--CCCeEEEEcCCCCchhhcc---cCCCccE
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKK--RTNVIPIIEDARHPAKYRM---LVGMVDV  216 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~--~~nV~~i~~D~~~~~~~~~---~~~~fD~  216 (264)
                      .+.+||=.|+.+| +...++..+. ...+|+.++.++...+++.+....  ..++.++..|+.+......   ....+|+
T Consensus         6 ~~k~vlItG~~~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~   84 (259)
T PRK06125          6 AGKRVLITGASKG-IGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDIDI   84 (259)
T ss_pred             CCCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence            3567888886544 5555554432 345899999886554444333222  2368889999987643211   1257899


Q ss_pred             EEEcCC
Q 024665          217 IFSDVA  222 (264)
Q Consensus       217 V~~d~p  222 (264)
                      ++.++.
T Consensus        85 lv~~ag   90 (259)
T PRK06125         85 LVNNAG   90 (259)
T ss_pred             EEECCC
Confidence            998764

>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed

Probab=80.57  E-value=3.8  Score=31.23  Aligned_cols=56  Identities=13%  Similarity=0.112  Sum_probs=32.2

Q ss_pred             EEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcC
Q 024665          146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDV  221 (264)
Q Consensus       146 ~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~  221 (264)
                      +|| +.||+|..|+.++..+.                +.++..  .-.+++.+.+..+...+ .....+|+|++-|
T Consensus         3 kIL-lvCg~G~STSlla~k~k----------------~~~~e~--gi~~~i~a~~~~e~~~~-~~~~~~DvIll~P   58 (104)
T PRK09590          3 KAL-IICAAGMSSSMMAKKTT----------------EYLKEQ--GKDIEVDAITATEGEKA-IAAAEYDLYLVSP   58 (104)
T ss_pred             EEE-EECCCchHHHHHHHHHH----------------HHHHHC--CCceEEEEecHHHHHHh-hccCCCCEEEECh
Confidence            454 89999999998887742                212221  12456666665544321 0123589888743

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=80.36  E-value=1.7  Score=38.67  Aligned_cols=79  Identities=16%  Similarity=0.157  Sum_probs=41.4

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHH-------------------Hh-----------hcC
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN-------------------MA-----------KKR  191 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~-------------------~a-----------~~~  191 (264)
                      ..+.++||+|||+=......|..  ---.|+..|+++.-.+++.+                   ..           +.+
T Consensus        55 ~~g~~llDiGsGPtiy~~lsa~~--~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR  132 (256)
T PF01234_consen   55 VKGETLLDIGSGPTIYQLLSACE--WFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR  132 (256)
T ss_dssp             S-EEEEEEES-TT--GGGTTGGG--TEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHhhhhHHH--hhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence            35789999999995543333322  12379999998544322211                   00           011


Q ss_pred             CCeE-EEEcCCCCchhhcc---cCCCccEEEEcCC
Q 024665          192 TNVI-PIIEDARHPAKYRM---LVGMVDVIFSDVA  222 (264)
Q Consensus       192 ~nV~-~i~~D~~~~~~~~~---~~~~fD~V~~d~p  222 (264)
                      ..|+ ++..|+++..+...   +..+||+|++-.-
T Consensus       133 ~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fc  167 (256)
T PF01234_consen  133 RAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFC  167 (256)
T ss_dssp             HHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESS
T ss_pred             HhhceEEEeeccCCCCCCccccCccchhhhhhhHH
Confidence            1343 77889988765432   2335999997544

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PLN02427 UDP-apiose/xylose synthase

Probab=80.34  E-value=5.2  Score=37.06  Aligned_cols=77  Identities=16%  Similarity=0.145  Sum_probs=49.8

Q ss_pred             CEEEEEcccCChHHHHHHHHhCCC--CEEEEEeCChHHHHHHHHHh--hcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          145 ARVLYLGAASGTTVSHVSDIVGPN--GVVYAVEFSHRSGRDLVNMA--KKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~~~~--g~V~avD~s~~~~~~l~~~a--~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      ++|| |--|+|.+..++++.+-..  -+|+++|.+......+....  ....+++++.+|+++..........+|+||.-
T Consensus        15 ~~Vl-VTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ViHl   93 (386)
T PLN02427         15 LTIC-MIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLTINL   93 (386)
T ss_pred             cEEE-EECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEEEEc
Confidence            5687 5557899999998876543  47999997743322222111  01237999999999865443334468999865


Q ss_pred             CC
Q 024665          221 VA  222 (264)
Q Consensus       221 ~p  222 (264)
                      ..
T Consensus        94 Aa   95 (386)
T PLN02427         94 AA   95 (386)
T ss_pred             cc
Confidence            43

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=80.32  E-value=4.4  Score=32.17  Aligned_cols=39  Identities=26%  Similarity=0.241  Sum_probs=23.2

Q ss_pred             EEcccCC--hHHHHHH-HHhCCCCEEEEEeCChHHHHHHHHH
Q 024665          149 YLGAASG--TTVSHVS-DIVGPNGVVYAVEFSHRSGRDLVNM  187 (264)
Q Consensus       149 DlG~G~G--~~s~~la-~~~~~~g~V~avD~s~~~~~~l~~~  187 (264)
                      |+||..|  ..+..++ ....+.++|+++|-++...+.+...
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~   42 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN   42 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence            8999999  5555443 2566788999999998776555444

; PDB: 2PY6_A.

>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]

Probab=80.17  E-value=8.7  Score=34.08  Aligned_cols=79  Identities=14%  Similarity=0.044  Sum_probs=52.3

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc-cCCCccEEE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-LVGMVDVIF  218 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~-~~~~fD~V~  218 (264)
                      .+.++.+ |...|||=-++.++...   +-++.++|+.+.=+..+.++-....||.+.+.|-........ ..+.=-+|+
T Consensus        86 ~lN~~~~-l~~YpGSP~lA~~llR~---qDRl~l~ELHp~D~~~L~~~f~~d~~vrv~~~DG~~~l~a~LPP~erRglVL  161 (279)
T COG2961          86 QLNPGGG-LRYYPGSPLLARQLLRE---QDRLVLTELHPSDAPLLRNNFAGDRRVRVLRGDGFLALKAHLPPKERRGLVL  161 (279)
T ss_pred             HhCCCCC-cccCCCCHHHHHHHcch---hceeeeeecCccHHHHHHHHhCCCcceEEEecCcHHHHhhhCCCCCcceEEE
Confidence            3556555 99999998888877754   448999999864433333333334499999999765332111 123457899


Q ss_pred             EcCC
Q 024665          219 SDVA  222 (264)
Q Consensus       219 ~d~p  222 (264)
                      .|||
T Consensus       162 IDPP  165 (279)
T COG2961         162 IDPP  165 (279)
T ss_pred             eCCC
Confidence            9999

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=80.05  E-value=24  Score=31.95  Aligned_cols=42  Identities=21%  Similarity=0.285  Sum_probs=26.2

Q ss_pred             ccCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCEEEEEeCChHH
Q 024665          138 NIWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRS  180 (264)
Q Consensus       138 ~~~l~~g~~VLDlG~G~-G~~s~~la~~~~~~g~V~avD~s~~~  180 (264)
                      +....++++||=.|||+ |..++.+|...+ ..+|+++|.+++-
T Consensus       164 ~~~~~~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~~~~  206 (343)
T PRK09880        164 QAGDLQGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVSPRS  206 (343)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCCHHH
Confidence            33456899999887631 224444555543 2379999998643

>PRK05866 short chain dehydrogenase; Provisional

Probab=80.04  E-value=11  Score=33.61  Aligned_cols=78  Identities=17%  Similarity=0.209  Sum_probs=48.2

Q ss_pred             CCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhcc-------cCCCc
Q 024665          144 GARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRM-------LVGMV  214 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~-------~~~~f  214 (264)
                      +.+||=.|+++ .+...+++.+ ....+|+.++.++..++++.+.... ...+.++..|+.+......       ..+.+
T Consensus        40 ~k~vlItGasg-gIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~i  118 (293)
T PRK05866         40 GKRILLTGASS-GIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIGGV  118 (293)
T ss_pred             CCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            46788888755 4455554433 3345899999986554444333222 2367889999988642211       12478


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+|+.++.
T Consensus       119 d~li~~AG  126 (293)
T PRK05866        119 DILINNAG  126 (293)
T ss_pred             CEEEECCC
Confidence            99998765

>PRK07890 short chain dehydrogenase; Provisional

Probab=80.03  E-value=16  Score=31.28  Aligned_cols=79  Identities=10%  Similarity=0.066  Sum_probs=48.3

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhcc-------cCCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRM-------LVGM  213 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~-------~~~~  213 (264)
                      ++.+||=.|+.+ .+..+++..+ ....+|+.++.++...+++.+... ...++.++..|+.+......       ..+.
T Consensus         4 ~~k~vlItGa~~-~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   82 (258)
T PRK07890          4 KGKVVVVSGVGP-GLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFGR   82 (258)
T ss_pred             CCCEEEEECCCC-cHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcCC
Confidence            456788777754 5555554433 234589999998654444333322 23478999999987643210       1246


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      +|+|+.+..
T Consensus        83 ~d~vi~~ag   91 (258)
T PRK07890         83 VDALVNNAF   91 (258)
T ss_pred             ccEEEECCc
Confidence            899998764

>PRK08628 short chain dehydrogenase; Provisional

Probab=80.01  E-value=18  Score=31.00  Aligned_cols=79  Identities=13%  Similarity=0.068  Sum_probs=46.7

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-------CCCc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGMV  214 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-------~~~f  214 (264)
                      .+.+||=.|+. |.+..+++..+- ....|+.++.++...+...+......+++++..|+.+.......       .+.+
T Consensus         6 ~~~~ilItGas-ggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   84 (258)
T PRK08628          6 KDKVVIVTGGA-SGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKFGRI   84 (258)
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence            35678877765 556665554442 34568888877543322122222234789999999886532111       1468


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |.|+.++.
T Consensus        85 d~vi~~ag   92 (258)
T PRK08628         85 DGLVNNAG   92 (258)
T ss_pred             CEEEECCc
Confidence            99998765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	264
2ipx_A	233	Human Fibrillarin Length = 233		1e-72
1pry_A	227	Structure Determination Of Fibrillarin Homologue Fr		1e-39
2nnw_B	234	Alternative Conformations Of Nop56/58-fibrillarin C		1e-39
1g8a_A	227	Pyrococcus Horikoshii Fibrillarin Pre-Rrna Processi		9e-39
4df3_A	233	Crystal Structure Of Aeropyrum Pernix Fibrillarin I		9e-37
3id5_B	232	Crystal Structure Of Sulfolobus Solfataricus CD RNP		4e-34
1g8s_A	230	Methanococcus Jannaschii Fibrillarin Pre-Rrna Proce		7e-32
1fbn_A	230	Crystal Structure Of A Fibrillarin Homologue From M		1e-31
1nt2_A	210	Crystal Structure Of FibrillarinNOP5P COMPLEX Lengt		4e-25

>pdb|2IPX|A Chain A, Human Fibrillarin Length = 233

Iteration: 1
 Score =  269 bits (688), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 128/164 (78%), Positives = 144/164 (87%), Gaps = 1/164 (0%)
Query: 69  VVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKL 128
           V VEPHRHEGVFI +GKEDALVTKNLV GE+VY EKR+S+   D  K+EYR WNPFRSKL
Sbjct: 4   VXVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSISEGD-DKIEYRAWNPFRSKL 62
Query: 129 AAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA 188
           AAA+LGGVD I IKPGA+VLYLGAASGTTVSHVSDIVGP+G+VYAVEFSHRSGRDL+N+A
Sbjct: 63  AAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLA 122
Query: 189 KKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCL 232
           KKRTN+IP+IEDARHP KYR L+  VDVIF+DVAQPDQ   + L
Sbjct: 123 KKRTNIIPVIEDARHPHKYRXLIAXVDVIFADVAQPDQTRIVAL 166

>pdb|1PRY|A Chain A, Structure Determination Of Fibrillarin Homologue From Hyperthermophilic Archaeon Pyrococcus Furiosus (Pfu-65527) Length = 227

Iteration: 1
 Score =  159 bits (403), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 87/165 (52%), Positives = 107/165 (64%), Gaps = 7/165 (4%)
Query: 69  VVVEPHRHEGVF--IAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRS 126
           V V+ H+  GV+  I     + + TKNLV G+ VY E+ I  + E     EYRIWNP RS
Sbjct: 2   VEVKKHKFPGVYVVIDDDGSEKIATKNLVPGQRVYGERVIKWEGE-----EYRIWNPHRS 56
Query: 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN 186
           KL AA++ G+ N  IKPG  VLYLG ASGTT SHVSDIVG  G +Y +EFS R  R+LV 
Sbjct: 57  KLGAAIVNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIYGIEFSPRVLRELVP 116
Query: 187 MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLC 231
           + ++R N+IPI+ DA  P +YR LV  VDVIF DVAQP Q   L 
Sbjct: 117 IVEERRNIIPILGDATKPEEYRALVTKVDVIFEDVAQPTQAKILI 161

>pdb|2NNW|B Chain B, Alternative Conformations Of Nop56/58-fibrillarin Complex And Implication For Induced-fit Assenly Of Box C/d Rnps Length = 234

Iteration: 1
 Score =  159 bits (403), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 87/165 (52%), Positives = 107/165 (64%), Gaps = 7/165 (4%)
Query: 69  VVVEPHRHEGVF--IAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRS 126
           V V+ H+  GV+  I     + + TKNLV G+ VY E+ I  + E     EYRIWNP RS
Sbjct: 9   VEVKKHKFPGVYVVIDDDGSEKIATKNLVPGQRVYGERVIKWEGE-----EYRIWNPHRS 63
Query: 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN 186
           KL AA++ G+ N  IKPG  VLYLG ASGTT SHVSDIVG  G +Y +EFS R  R+LV 
Sbjct: 64  KLGAAIVNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIYGIEFSPRVLRELVP 123
Query: 187 MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLC 231
           + ++R N+IPI+ DA  P +YR LV  VDVIF DVAQP Q   L 
Sbjct: 124 IVEERRNIIPILGDATKPEEYRALVTKVDVIFEDVAQPTQAKILI 168

>pdb|1G8A|A Chain A, Pyrococcus Horikoshii Fibrillarin Pre-Rrna Processing Protein Length = 227

Iteration: 1
 Score =  156 bits (395), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 85/165 (51%), Positives = 107/165 (64%), Gaps = 7/165 (4%)
Query: 69  VVVEPHRHEGVF--IAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRS 126
           V V+ H+  GV+  I     + + TKNLV G+ VY E+ I  + E     EYRIWNP RS
Sbjct: 2   VEVKKHKFPGVYTVIDDDGSERIATKNLVPGQRVYGERVIKWEGE-----EYRIWNPNRS 56
Query: 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN 186
           KL AA++ G+ N  IKPG  VLYLG ASGTT SHVSDIVG  G ++ +EFS R  R+LV 
Sbjct: 57  KLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVP 116
Query: 187 MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLC 231
           + ++R N++PI+ DA  P +YR LV  VDVIF DVAQP Q   L 
Sbjct: 117 IVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILI 161

>pdb|4DF3|A Chain A, Crystal Structure Of Aeropyrum Pernix Fibrillarin In Complex With Natively Bound S-adenosyl-l-methionine At 1.7a Length = 233

Iteration: 1
 Score =  150 bits (378), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 80/167 (47%), Positives = 109/167 (65%), Gaps = 10/167 (5%)
Query: 70  VVEPHRHE---GVFIAKGKEDAL--VTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPF 124
           VV   RH+   GV++ + ++ +L   TKNLV G+ VY E+      E     EYR WN +
Sbjct: 4   VVSVSRHDRWRGVYVVELEDGSLRIATKNLVPGQRVYGERIFRYNGE-----EYREWNAY 58
Query: 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDL 184
           RSKLAAA+L G+  + +K G R+LYLG ASGTT SH+SDI+GP G +Y VEF+ R  RDL
Sbjct: 59  RSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDL 118
Query: 185 VNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLC 231
           + + + R N+ PI+ DAR P KYR LV  VD +++DVAQP+Q   + 
Sbjct: 119 LTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYADVAQPEQAAIVV 165

>pdb|3ID5|B Chain B, Crystal Structure Of Sulfolobus Solfataricus CD RNP ASSEMBLED WITH Nop5, Fibrillarin, L7ae And A Split Half CD RNA Length = 232

Iteration: 1
 Score =  141 bits (355), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 72/139 (51%), Positives = 94/139 (67%), Gaps = 5/139 (3%)
Query: 89  LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVL 148
           L T+NLV    VY E+ I  +      VEYR WN FRSKLA A+L G+    I+ G +VL
Sbjct: 27  LCTRNLVPNFNVYGERLIKYEG-----VEYREWNAFRSKLAGAILKGLKTNPIRKGTKVL 81
Query: 149 YLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR 208
           YLGAASGTT+SHVSDI+  NG  Y VEFS R  R+L+ +A++R N+ P++ DAR P  Y+
Sbjct: 82  YLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYK 141
Query: 209 MLVGMVDVIFSDVAQPDQV 227
            +V  VDV++ D+AQPDQ 
Sbjct: 142 SVVENVDVLYVDIAQPDQT 160

>pdb|1G8S|A Chain A, Methanococcus Jannaschii Fibrillarin Pre-Rrna Processing Protein Length = 230

Iteration: 1
 Score =  134 bits (336), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 68/142 (47%), Positives = 100/142 (70%), Gaps = 6/142 (4%)
Query: 89  LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVL 148
           + TK++V G+ VY+EK I + +E     EYRIWNP +SKLAAA++ G+  + IK  +++L
Sbjct: 25  IATKSIVKGKKVYDEKIIKIGDE-----EYRIWNPNKSKLAAAIIKGLKVMPIKRDSKIL 79
Query: 149 YLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR 208
           YLGA++GTT SHV+DI    G+VYA+E++ R  R+L++   +R N+IPI+ DA  P +Y 
Sbjct: 80  YLGASAGTTPSHVADI-ADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYA 138
Query: 209 MLVGMVDVIFSDVAQPDQVCFL 230
            +V  VDVI+ DVAQP+Q   L
Sbjct: 139 NIVEKVDVIYEDVAQPNQAEIL 160

>pdb|1FBN|A Chain A, Crystal Structure Of A Fibrillarin Homologue From Methanococcus Jannaschii, A Hyperthermophile, At 1.6 A Length = 230

Iteration: 1
 Score =  133 bits (334), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 68/142 (47%), Positives = 99/142 (69%), Gaps = 6/142 (4%)
Query: 89  LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVL 148
           + TK++V G+ VY+EK I + +E     EYRIWNP +SKLAAA++ G+    IK  +++L
Sbjct: 25  IATKSIVKGKKVYDEKIIKIGDE-----EYRIWNPNKSKLAAAIIKGLKVXPIKRDSKIL 79
Query: 149 YLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR 208
           YLGA++GTT SHV+DI    G+VYA+E++ R  R+L++   +R N+IPI+ DA  P +Y 
Sbjct: 80  YLGASAGTTPSHVADI-ADKGIVYAIEYAPRIXRELLDACAERENIIPILGDANKPQEYA 138
Query: 209 MLVGMVDVIFSDVAQPDQVCFL 230
            +V  VDVI+ DVAQP+Q   L
Sbjct: 139 NIVEKVDVIYEDVAQPNQAEIL 160

>pdb|1NT2|A Chain A, Crystal Structure Of FibrillarinNOP5P COMPLEX Length = 210

Iteration: 1
 Score =  111 bits (277), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 65/145 (44%), Positives = 91/145 (62%), Gaps = 13/145 (8%)
Query: 86  EDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGA 145
           +D LVTK+       Y EK       DG    YR W P+RSKLAA +L G   + ++   
Sbjct: 12  DDTLVTKSKYGSH--YGEKVF-----DG----YREWVPWRSKLAAMILKG-HRLKLRGDE 59
Query: 146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPA 205
           RVLYLGAASGTTVSH++DIV   G++YAVE+S +    L+ + ++R N+IP++ DA  P 
Sbjct: 60  RVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPW 118
Query: 206 KYRMLVGMVDVIFSDVAQPDQVCFL 230
           KY  +V  VD+I+ D+AQ +Q+  L
Sbjct: 119 KYSGIVEKVDLIYQDIAQKNQIEIL 143

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	264
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	100.0
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.97
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.94
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.89
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.88
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.87
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.54
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.53
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.53
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.52
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.51
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.51
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.5
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.49
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.47
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.45
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.44
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.41
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.4
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.38
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.37
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.36
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.35
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.34
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	99.34
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.34
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.34
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.32
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.31
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.3
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.29
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.29
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.29
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.28
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.26
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.26
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.25
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.24
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.23
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.23
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.23
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.22
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.21
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.21
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.21
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.21
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.2
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.2
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.2
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.2
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.19
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.19
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.19
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.19
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.17
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.17
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.17
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.17
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.16
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.16
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.16
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.16
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.16
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.16
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.16
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.16
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.16
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.15
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.15
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.15
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.15
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.15
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.14
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.14
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.14
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.14
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.13
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.13
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.13
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.12
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.12
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.11
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.11
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.11
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.11
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.11
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.1
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.1
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.1
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.1
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.1
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.1
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.1
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.1
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.1
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.1
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.1
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.09
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.08
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.08
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.08
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.08
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.08
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.07
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.07
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.07
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.07
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.07
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.07
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.07
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.07
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.07
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.06
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.06
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.06
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.06
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.06
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.05
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.05
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.05
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.05
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.05
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.05
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.04
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.04
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.04
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.04
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.03
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.03
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.02
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.02
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	99.02
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.02
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.02
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.01
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.01
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.01
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.0
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.0
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.0
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.0
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.0
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.0
2o07_A	304	Spermidine synthase; structural genomics, structur	99.0
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.99
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	98.99
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	98.99
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	98.99
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.99
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	98.99
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	98.99
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.98
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	98.98
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	98.98
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	98.98
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.98
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.98
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.98
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.98
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	98.97
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.97
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	98.97
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	98.97
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	98.97
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	98.96
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.96
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	98.96
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	98.96
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	98.96
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.96
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	98.95
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	98.95
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	98.95
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.95
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.95
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.95
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	98.95
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	98.95
3lcc_A	235	Putative methyl chloride transferase; halide methy	98.95
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	98.95
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	98.94
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	98.94
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.94
3ocj_A	305	Putative exported protein; structural genomics, PS	98.93
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	98.93
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	98.92
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.92
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	98.92
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	98.92
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.92
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	98.91
2p7i_A	250	Hypothetical protein; putative methyltransferase,	98.91
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	98.91
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.91
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	98.91
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.9
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	98.9
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.9
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	98.9
3i9f_A	170	Putative type 11 methyltransferase; structural gen	98.9
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	98.9
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.9
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.89
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	98.89
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.89
2pt6_A	321	Spermidine synthase; transferase, structural genom	98.88
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.88
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.88
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	98.87
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	98.87
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.87
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.87
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.87
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	98.87
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	98.87
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	98.86
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	98.85
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.85
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.85
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.84
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.84
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.84
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	98.83
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.83
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	98.83
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.82
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.82
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.82
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.82
2qm3_A	373	Predicted methyltransferase; putative methyltransf	98.81
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	98.8
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.78
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.78
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	98.78
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.77
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.74
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.74
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.74
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.73
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.72
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.72
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.7
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.7
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.69
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.68
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.65
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	98.63
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.6
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	98.59
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.58
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.58
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.58
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.56
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.55
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.55
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.54
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.52
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.47
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.47
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.46
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	98.46
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.46
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.45
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.45
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.44
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	98.44
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.43
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.39
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.38
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.38
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.36
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.36
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.35
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.34
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	98.33
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.32
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.3
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.29
3lkd_A	542	Type I restriction-modification system methyltrans	98.26
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.26
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	98.26
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.23
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.21
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.2
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	98.17
3khk_A	544	Type I restriction-modification system methylation	98.17
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.16
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.1
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.06
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.06
3ufb_A	530	Type I restriction-modification system methyltran	98.04
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.01
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	97.97
2oo3_A	283	Protein involved in catabolism of external DNA; st	97.72
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.68
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	97.68
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.64
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	97.5
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	97.47
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	97.41
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	97.35
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.0
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	96.97
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	96.69
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	96.67
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	96.66
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	96.57
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	96.56
3me5_A	482	Cytosine-specific methyltransferase; structural ge	96.21
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	95.57
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	95.11
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	94.58
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	94.49
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	93.95
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	93.38
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	93.35
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	93.2
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	92.6
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	92.55
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	91.94
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	91.73
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	91.68
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	91.54
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	91.38
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	91.26
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	91.11
3c85_A	183	Putative glutathione-regulated potassium-efflux S	90.99
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	90.88
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	90.82
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	90.69
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	90.52
1lnq_A	336	MTHK channels, potassium channel related protein;	90.35
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	90.32
1id1_A	153	Putative potassium channel protein; RCK domain, E.	90.15
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	90.14
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	90.07
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	89.89
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	89.68
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	89.68
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	89.55
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	89.47
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	89.47
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	89.44
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	89.38
4dqx_A	277	Probable oxidoreductase protein; structural genomi	89.27
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	89.27
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	89.24
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	89.24
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	89.14
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	89.12
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	89.11
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	89.1
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	89.04
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	88.99
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	88.99
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	88.86
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	88.75
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	88.64
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	88.56
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	88.54
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	88.46
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	88.34
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	88.34
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	88.32
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	88.27
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	88.26
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	88.23
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	88.23
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	88.18
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	88.15
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	88.09
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	88.04
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	88.02
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	88.0
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	87.84
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	87.76
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	87.7
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	87.69
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	87.52
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	87.51
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	87.51
3cxt_A	291	Dehydrogenase with different specificities; rossma	87.45
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	87.38
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	87.36
1spx_A	278	Short-chain reductase family member (5L265); paral	87.33
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	87.19
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	87.16
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	87.13
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	87.11
1xq1_A	266	Putative tropinone reducatse; structural genomics,	87.04
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	87.02
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	86.95
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	86.82
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	86.8
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	86.77
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	86.74
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	86.66
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	86.55
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	86.54
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	86.49
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	86.39
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	86.39
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	86.36
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	86.27
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	86.11
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	86.08
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	86.07
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	86.02
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	86.01
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	86.0
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	85.97
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	85.97
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	85.92
3imf_A	257	Short chain dehydrogenase; structural genomics, in	85.85
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	85.84
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	85.84
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	85.84
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	85.79
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	85.74
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	85.65
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	85.58
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	85.46
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	85.38
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	85.32
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	85.3
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	85.29
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	85.28
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	85.26
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	85.23
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	85.16
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	85.1
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	85.01
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	85.01
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	85.0
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	84.8
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	84.77
4g65_A	461	TRK system potassium uptake protein TRKA; structur	84.76
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	84.65
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	84.63
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	84.63
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	84.62
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	84.56
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	84.55
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	84.55
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	84.54
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	84.49
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	84.46
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	84.33
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	84.24
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	84.2
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	84.14
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	84.05
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	83.91
2zig_A	297	TTHA0409, putative modification methylase; methylt	83.79
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	83.68
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	83.63
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	83.59
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	83.42
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	83.41
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	83.41
1xkq_A	280	Short-chain reductase family member (5D234); parra	83.41
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	83.39
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	82.91
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	82.89
4g65_A	461	TRK system potassium uptake protein TRKA; structur	82.85
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	82.51
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	82.47
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	82.39
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	82.37
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	82.32
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	82.28
3rih_A	293	Short chain dehydrogenase or reductase; structural	82.24
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	81.93
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	81.92
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	81.88
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	81.71
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	81.62
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	81.55
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	81.54
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	81.41
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	81.26
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	81.24
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	81.24
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	81.21
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	81.2
1xhl_A	297	Short-chain dehydrogenase/reductase family member	80.93
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	80.89
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	80.83
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	80.69
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	80.65
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	80.54
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	80.49
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	80.45
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	80.31
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	80.27
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	80.21
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	80.11

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=100.00  E-value=1.7e-35  Score=256.84  Aligned_cols=166  Identities=47%  Similarity=0.792  Sum_probs=149.3

Q ss_pred             eeeecce-eeceEEEecCCccc--ccccccCCCceeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCC
Q 024665           68 KVVVEPH-RHEGVFIAKGKEDA--LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPG  144 (264)
Q Consensus        68 k~~i~~~-~~~g~~~~~~~~d~--l~~~~~~~g~~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g  144 (264)
                      -|.|+|| +|+|+|+++++++.  |+|+|++||+++|+|+.+.++.     .+||.|+||+|||++.|++.++++.++||
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~l~t~n~~~g~~vyge~~~~~~~-----~e~r~w~p~rsklaa~i~~gl~~l~ikpG   78 (233)
T 4df3_A            4 VVSVSRHDRWRGVYVVELEDGSLRIATKNLVPGQRVYGERIFRYNG-----EEYREWNAYRSKLAAALLKGLIELPVKEG   78 (233)
T ss_dssp             EEEEEECSSSTTEEEEEETTSCEEEEEECSSTTCCSSSCCEEEETT-----EEEEECCTTTCHHHHHHHTTCSCCCCCTT
T ss_pred             eeEEeEecccCCEEEEEccCCceeEEEecCCCCCcccCceEEEcCC-----ceeeeECCCchHHHHHHHhchhhcCCCCC
Confidence            4889999 89999999987764  7999999999999999887755     58999999999999999999999999999


Q ss_pred             CEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCCCc
Q 024665          145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQP  224 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~~  224 (264)
                      ++|||+|||+|++++++|+.++++++|||+|++++|++++.+.+....|++++..|+.++..+....+++|+|++|++.|
T Consensus        79 ~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d~~~~  158 (233)
T 4df3_A           79 DRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYADVAQP  158 (233)
T ss_dssp             CEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEECCCCT
T ss_pred             CEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEeccCC
Confidence            99999999999999999999999999999999999999999988888899999999999887777788999999999988


Q ss_pred             hHHHHHHH---HHhCCC
Q 024665          225 DQVCFLCL---ILFQPI  238 (264)
Q Consensus       225 ~~~~~~~~---~~l~~~  238 (264)
                      ++......   ..++|+
T Consensus       159 ~~~~~~l~~~~r~LKpG  175 (233)
T 4df3_A          159 EQAAIVVRNARFFLRDG  175 (233)
T ss_dssp             THHHHHHHHHHHHEEEE
T ss_pred             hhHHHHHHHHHHhccCC
Confidence            87654443   345554

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.97  E-value=1.1e-30  Score=226.74  Aligned_cols=165  Identities=45%  Similarity=0.712  Sum_probs=145.8

Q ss_pred             eeecceeeceEEEec--CCcccccccccCCCceeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCCCE
Q 024665           69 VVVEPHRHEGVFIAK--GKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGAR  146 (264)
Q Consensus        69 ~~i~~~~~~g~~~~~--~~~d~l~~~~~~~g~~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~~  146 (264)
                      +.|+||+|+|+|+.+  ++++.|+|+|++||+.+|+|..+.++.     .+|+.|+|+++++++.++..|+.+.++|+++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~pg~~vy~e~~~~~~~-----~~yr~w~~~~skla~~ll~~l~~~~l~~g~~   79 (232)
T 3id6_C            5 ITVKQTNMENIYECEFNDGSFRLCTRNLVPNFNVYGERLIKYEG-----VEYREWNAFRSKLAGAILKGLKTNPIRKGTK   79 (232)
T ss_dssp             CEEEECSSTTEEEEECTTSCEEEEEECSSTTCCSSSCCEEEETT-----EEEEECCTTTCHHHHHHHTTCSCCSCCTTCE
T ss_pred             EEEEeeccCcEEEEEccCCcceEEEecccCCCCcccceeeeecC-----cchhhhchHHHHHHHHHHhhhhhcCCCCCCE
Confidence            457899999999998  678899999999999999999988765     4799999999999999999998889999999


Q ss_pred             EEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCCCchH
Q 024665          147 VLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ  226 (264)
Q Consensus       147 VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~~~~  226 (264)
                      |||+|||||.++.++|+++++.++|||+|+|+.+++++++.+..+.||+++++|++++..+..+.++||+|++|++.|++
T Consensus        80 VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~a~~~~  159 (232)
T 3id6_C           80 VLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQPDQ  159 (232)
T ss_dssp             EEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEECCCCTTH
T ss_pred             EEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEecCCChhH
Confidence            99999999999999999999999999999999998888888877789999999999876554456799999999999887


Q ss_pred             HHHHHH--H-HhCCC
Q 024665          227 VCFLCL--I-LFQPI  238 (264)
Q Consensus       227 ~~~~~~--~-~l~~~  238 (264)
                      ..+...  . .++|+
T Consensus       160 ~~il~~~~~~~LkpG  174 (232)
T 3id6_C          160 TDIAIYNAKFFLKVN  174 (232)
T ss_dssp             HHHHHHHHHHHEEEE
T ss_pred             HHHHHHHHHHhCCCC
Confidence            765532  2 55665

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.94  E-value=3.4e-26  Score=196.86  Aligned_cols=172  Identities=75%  Similarity=1.194  Sum_probs=137.7

Q ss_pred             CceeeecceeeceEEEecCCcccccccccCCCceeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCCC
Q 024665           66 GSKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGA  145 (264)
Q Consensus        66 g~k~~i~~~~~~g~~~~~~~~d~l~~~~~~~g~~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~  145 (264)
                      |+|++||||.++|+|+.+++++.+.|.|+.|+..+|+++.+.+.. ..+..+|+.|+|+.++++..++..++.+.+++++
T Consensus         1 ~~~~~~~~~~~~g~~~~~~~~~~~~~~n~~~~~~vy~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   79 (233)
T 2ipx_A            1 GKNVMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSISE-GDDKIEYRAWNPFRSKLAAAILGGVDQIHIKPGA   79 (233)
T ss_dssp             ----CCEECSSTTEEECC-----CEEECSSTTCCSSSCCEEEEC-----CEEEEECCTTTCHHHHHHHTTCSCCCCCTTC
T ss_pred             CCceEEeecccCceEEEecCCceEEEEecCCCcccccceEEEecC-CCCceEEEEecccchhHHHHHHhHHheecCCCCC
Confidence            478999999999999999888899999999999999999888762 2256789999999999998888777777789999


Q ss_pred             EEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCCCch
Q 024665          146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPD  225 (264)
Q Consensus       146 ~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~~~  225 (264)
                      +|||+|||+|.++..+++.+++.++|+++|+|+.+++++++.+..+.|++++++|+.++..+....++||+|++|++.++
T Consensus        80 ~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~~~~~  159 (233)
T 2ipx_A           80 KVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPD  159 (233)
T ss_dssp             EEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEECCCCTT
T ss_pred             EEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEcCCCcc
Confidence            99999999999999999998777899999999998888888887778999999999985433334578999999999776


Q ss_pred             HH---HHHHHHHhCCC
Q 024665          226 QV---CFLCLILFQPI  238 (264)
Q Consensus       226 ~~---~~~~~~~l~~~  238 (264)
                      +.   .......++|.
T Consensus       160 ~~~~~~~~~~~~Lkpg  175 (233)
T 2ipx_A          160 QTRIVALNAHTFLRNG  175 (233)
T ss_dssp             HHHHHHHHHHHHEEEE
T ss_pred             HHHHHHHHHHHHcCCC
Confidence            65   33355566665

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.89  E-value=3.1e-22  Score=172.02  Aligned_cols=162  Identities=41%  Similarity=0.692  Sum_probs=132.3

Q ss_pred             eecceeeceEEEecCCcc--cccccccCCCceeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCCCEE
Q 024665           70 VVEPHRHEGVFIAKGKED--ALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARV  147 (264)
Q Consensus        70 ~i~~~~~~g~~~~~~~~d--~l~~~~~~~g~~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~~V  147 (264)
                      .|+ |+++|+|+.+++++  .++|.|+.|+..+|++..+.+..     .+|+.|+|++++++..++..++.+.++++++|
T Consensus         5 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vyge~~~~~~~-----~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~V   78 (230)
T 1fbn_A            5 KIK-EIFENIYEVDLGDGLKRIATKSIVKGKKVYDEKIIKIGD-----EEYRIWNPNKSKLAAAIIKGLKVMPIKRDSKI   78 (230)
T ss_dssp             EEE-EETTTEEEEECSSSCCCEEEECSSTTCCSSSCCEEEETT-----EEEEECCTTTCHHHHHHHTTCCCCCCCTTCEE
T ss_pred             ccc-cccCcEEEEecCCCceeeeEEccCCCCCccCceEEeecc-----ceeeeeCcchhHHHHHHHhcccccCCCCCCEE
Confidence            344 89999999998766  79999999999999999888764     47999999999998888666666668899999


Q ss_pred             EEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCCCch--
Q 024665          148 LYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPD--  225 (264)
Q Consensus       148 LDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~~~--  225 (264)
                      ||+|||+|.++.++++.++ .++|+++|+|+.+++.+.+.+....|++++++|+.++..+..+.++||+|+.+++.+.  
T Consensus        79 LDlGcG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~  157 (230)
T 1fbn_A           79 LYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDVAQPNQA  157 (230)
T ss_dssp             EEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEEECCCSTTHH
T ss_pred             EEEcccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEEEecCChhHH
Confidence            9999999999999999975 6799999999999888777776667999999999885432223368999999988773  


Q ss_pred             -HHHHHHHHHhCCC
Q 024665          226 -QVCFLCLILFQPI  238 (264)
Q Consensus       226 -~~~~~~~~~l~~~  238 (264)
                       .........++|.
T Consensus       158 ~~~l~~~~~~Lkpg  171 (230)
T 1fbn_A          158 EILIKNAKWFLKKG  171 (230)
T ss_dssp             HHHHHHHHHHEEEE
T ss_pred             HHHHHHHHHhCCCC
Confidence             3344444555555

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.88  E-value=6.8e-22  Score=168.46  Aligned_cols=150  Identities=42%  Similarity=0.678  Sum_probs=123.4

Q ss_pred             ceeeceEEEecCCcccccccccCCCceeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCCCEEEEEcc
Q 024665           73 PHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGA  152 (264)
Q Consensus        73 ~~~~~g~~~~~~~~d~l~~~~~~~g~~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~  152 (264)
                      ||.++|+|+.+   +.++|+|+.|  .+|+++.+         .+|+.|+|+++++.+.++..++ +.++++++|||+||
T Consensus         2 ~~~~~~~~~~~---~~~~t~~~~~--~~Y~~~~~---------~~y~~~~~~~~~l~~~~~~~l~-~~~~~g~~VLDlGc   66 (210)
T 1nt2_A            2 KELMRNVYLLD---DTLVTKSKYG--SHYGEKVF---------DGYREWVPWRSKLAAMILKGHR-LKLRGDERVLYLGA   66 (210)
T ss_dssp             CEEETTEEEET---TEEEEECSCC--CSSSCCEE---------TTEEECCGGGCHHHHHHHTSCC-CCCCSSCEEEEETC
T ss_pred             CcccCcEEEEe---eeEeeccCCc--cccchhhh---------hhhhhcChhHHHHHHHHHhhcc-cCCCCCCEEEEECC
Confidence            78999999997   7899999988  68998755         3689999999999888887776 67889999999999


Q ss_pred             cCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCCCchHHH---H
Q 024665          153 ASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVC---F  229 (264)
Q Consensus       153 G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~~~~~~---~  229 (264)
                      |+|.++.++++.++ .++|+|+|+|+.|++.+++.+....|++++++|+.++..+..+.++||+|+++++.+++..   .
T Consensus        67 GtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~l~  145 (210)
T 1nt2_A           67 ASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQKNQIEILKA  145 (210)
T ss_dssp             TTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECCCSTTHHHHHHH
T ss_pred             cCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEeccChhHHHHHHH
Confidence            99999999999976 7799999999998888888777677999999999886432223478999999988766543   3


Q ss_pred             HHHHHhCCC
Q 024665          230 LCLILFQPI  238 (264)
Q Consensus       230 ~~~~~l~~~  238 (264)
                      .....++|+
T Consensus       146 ~~~r~Lkpg  154 (210)
T 1nt2_A          146 NAEFFLKEK  154 (210)
T ss_dssp             HHHHHEEEE
T ss_pred             HHHHHhCCC
Confidence            344556665

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.87  E-value=2.3e-21  Score=165.68  Aligned_cols=165  Identities=50%  Similarity=0.784  Sum_probs=133.8

Q ss_pred             eeecceeeceEEEecCCc--ccccccccCCCceeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCCCE
Q 024665           69 VVVEPHRHEGVFIAKGKE--DALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGAR  146 (264)
Q Consensus        69 ~~i~~~~~~g~~~~~~~~--d~l~~~~~~~g~~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~~  146 (264)
                      |.|++|.+.++|+.+++.  +.+++.++.++..+|++..+....     .+|+.|.|.+++++..++..++.+.++++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~p~~~~~~~~i~~~l~~~~~~~~~~   76 (227)
T 1g8a_A            2 VEVKKHKFPGVYTVIDDDGSERIATKNLVPGQRVYGERVIKWEG-----EEYRIWNPNRSKLGAAIMNGLKNFPIKPGKS   76 (227)
T ss_dssp             CEEEECSSTTEEEEECSSSCSEEEEECSSTTCCCTTCCEEEETT-----EEEEECCTTTCHHHHHHHTTCCCCCCCTTCE
T ss_pred             ceeeeeccCceEEEecCCchhheeeecCCCCccccCceEEEecC-----eEEEEeCCCchhHHHHHHhhHHhcCCCCCCE
Confidence            568889999999999765  478999999999889988665533     5788999999999999987777777889999


Q ss_pred             EEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCCCchH
Q 024665          147 VLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ  226 (264)
Q Consensus       147 VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~~~~  226 (264)
                      |||+|||+|.++..+++.+++.++|+++|+|+.+++.+.+.+....|+++++.|+.+...+....++||+|++|++.+++
T Consensus        77 vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~  156 (227)
T 1g8a_A           77 VLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQ  156 (227)
T ss_dssp             EEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECCCSTTH
T ss_pred             EEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEECCCCHhH
Confidence            99999999999999999987778999999999998888787766679999999998854322234589999999986665


Q ss_pred             H---HHHHHHHhCCC
Q 024665          227 V---CFLCLILFQPI  238 (264)
Q Consensus       227 ~---~~~~~~~l~~~  238 (264)
                      .   .......++|+
T Consensus       157 ~~~~l~~~~~~Lkpg  171 (227)
T 1g8a_A          157 AKILIDNAEVYLKRG  171 (227)
T ss_dssp             HHHHHHHHHHHEEEE
T ss_pred             HHHHHHHHHHhcCCC
Confidence            2   23334445554

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.54  E-value=9.5e-14  Score=120.05  Aligned_cols=155  Identities=22%  Similarity=0.270  Sum_probs=110.2

Q ss_pred             cccccccccCCCceeeeee--EEEEecCCCceecceEeC-----CcchHHHHHHHhcccccCCCCCCEEEEEcccCChHH
Q 024665           86 EDALVTKNLVAGEAVYNEK--RISVQNEDGTKVEYRIWN-----PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTV  158 (264)
Q Consensus        86 ~d~l~~~~~~~g~~vy~e~--~~~v~~~~~~~~~yr~~~-----p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s  158 (264)
                      .+.++.++  .+..++...  .+.+..|  +..+|....     +..++.+..++..++   ++++++|||+|||+|.++
T Consensus        36 ~~~~ig~~--~g~~i~~~~g~~~~~~~p--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~vldiG~G~G~~~  108 (255)
T 3mb5_A           36 LEEIIGRN--FGEAIKSHKGHEFKILRP--RIVDYLDKMKRGPQIVHPKDAALIVAYAG---ISPGDFIVEAGVGSGALT  108 (255)
T ss_dssp             GGGGTTCC--TTCEEECTTCCEEEEECC--CHHHHHHHSCCCSCCCCHHHHHHHHHHTT---CCTTCEEEEECCTTSHHH
T ss_pred             HHHhcCCC--CCcEEEECCCcEEEEeCC--CHHHHHhhCccccccccHhHHHHHHHhhC---CCCCCEEEEecCCchHHH
Confidence            34555555  566666432  3444455  333333222     223455566655544   889999999999999999


Q ss_pred             HHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcccCCCccEEEEcCCCchHHHHHHHHHh
Q 024665          159 SHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCLILF  235 (264)
Q Consensus       159 ~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~~~~~~~~~~~~l  235 (264)
                      ..+++.+++..+|+++|+++.+++.+.+....   ..++++++.|+.+..    ...+||+|++|+|.++.........+
T Consensus       109 ~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~D~v~~~~~~~~~~l~~~~~~L  184 (255)
T 3mb5_A          109 LFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGI----EEENVDHVILDLPQPERVVEHAAKAL  184 (255)
T ss_dssp             HHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCC----CCCSEEEEEECSSCGGGGHHHHHHHE
T ss_pred             HHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhcc----CCCCcCEEEECCCCHHHHHHHHHHHc
Confidence            99999988889999999998876555544332   234999999998653    24579999999999988888888888


Q ss_pred             CCC--------cHHHHHHHHHHhh
Q 024665          236 QPI--------VINNLQSVNNETK  251 (264)
Q Consensus       236 ~~~--------~~~~l~~~~~~Lk  251 (264)
                      +|.        ...++.++.+.|+
T Consensus       185 ~~gG~l~~~~~~~~~~~~~~~~l~  208 (255)
T 3mb5_A          185 KPGGFFVAYTPCSNQVMRLHEKLR  208 (255)
T ss_dssp             EEEEEEEEEESSHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHH
Confidence            887        4556777777776

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.53  E-value=2.6e-15  Score=141.69  Aligned_cols=104  Identities=18%  Similarity=0.196  Sum_probs=86.3

Q ss_pred             eeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCCh
Q 024665           99 AVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSH  178 (264)
Q Consensus        99 ~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~  178 (264)
                      ..|.++.+++|++             ++++++.++      .++++++|||+|||+|.+|+++|+.+.+.++|+|+|+|+
T Consensus        80 ~~~~~G~~~vQd~-------------ss~l~~~~L------~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~  140 (456)
T 3m4x_A           80 FLHQAGYEYSQEP-------------SAMIVGTAA------AAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFP  140 (456)
T ss_dssp             HHHHTTSCEECCT-------------TTHHHHHHH------CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSH
T ss_pred             hHHhCCcEEEECH-------------HHHHHHHHc------CCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCH
Confidence            4788889999998             888888877      478999999999999999999999998788999999998


Q ss_pred             HHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEEcCCC
Q 024665          179 RSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       179 ~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~  223 (264)
                      .+++.+.+++...  .||++++.|+.++..+  ..+.||+|++|+|+
T Consensus       141 ~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~--~~~~FD~Il~DaPC  185 (456)
T 3m4x_A          141 KRAKILSENIERWGVSNAIVTNHAPAELVPH--FSGFFDRIVVDAPC  185 (456)
T ss_dssp             HHHHHHHHHHHHHTCSSEEEECCCHHHHHHH--HTTCEEEEEEECCC
T ss_pred             HHHHHHHHHHHHcCCCceEEEeCCHHHhhhh--ccccCCEEEECCCC
Confidence            7765555544322  3899999999876532  34789999999993

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.53  E-value=1.8e-14  Score=129.69  Aligned_cols=103  Identities=24%  Similarity=0.258  Sum_probs=83.5

Q ss_pred             eeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCCh
Q 024665           99 AVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSH  178 (264)
Q Consensus        99 ~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~  178 (264)
                      ..|.++.+++|++             ++++++.++      .++++++|||+|||+|.+++++|+.+.+.++|+|+|+|+
T Consensus        93 ~~~~~G~~~~qd~-------------~s~l~~~~l------~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~  153 (315)
T 1ixk_A           93 PEFLTGLIYIQEA-------------SSMYPPVAL------DPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDE  153 (315)
T ss_dssp             HHHHTTSEEECCH-------------HHHHHHHHH------CCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCH
T ss_pred             hhHhcceEEEeCH-------------HHHHHHHHh------CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCH
Confidence            3577778888886             777777766      478999999999999999999999987778999999998


Q ss_pred             HHHHHHHHHhhc--CCCeEEEEcCCCCchhhcccCCCccEEEEcCCC
Q 024665          179 RSGRDLVNMAKK--RTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       179 ~~~~~l~~~a~~--~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~  223 (264)
                      .+++.+.++...  ..||++++.|+.++..   ..++||+|++|+|+
T Consensus       154 ~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~---~~~~fD~Il~d~Pc  197 (315)
T 1ixk_A          154 NRLRETRLNLSRLGVLNVILFHSSSLHIGE---LNVEFDKILLDAPC  197 (315)
T ss_dssp             HHHHHHHHHHHHHTCCSEEEESSCGGGGGG---GCCCEEEEEEECCT
T ss_pred             HHHHHHHHHHHHhCCCeEEEEECChhhccc---ccccCCEEEEeCCC
Confidence            876665554432  2389999999988653   34689999999983

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.52  E-value=5.1e-14  Score=126.65  Aligned_cols=107  Identities=20%  Similarity=0.243  Sum_probs=86.2

Q ss_pred             ceeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCC
Q 024665           98 EAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFS  177 (264)
Q Consensus        98 ~~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s  177 (264)
                      ...|.++.+++|++             ++++++.++      .++++++|||+|||+|.+|+++|+.+.+.++|+|+|++
T Consensus        76 ~~~~~~G~~~~Qd~-------------~s~l~~~~l------~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~  136 (309)
T 2b9e_A           76 HPLYRAGHLILQDR-------------ASCLPAMLL------DPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLD  136 (309)
T ss_dssp             SHHHHTTSEEECCT-------------GGGHHHHHH------CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESC
T ss_pred             ChHHHCCeEEEECH-------------HHHHHHHHh------CCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCC
Confidence            34677889999998             888888776      48899999999999999999999999878999999999


Q ss_pred             hHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEEcCCC
Q 024665          178 HRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       178 ~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~  223 (264)
                      +.+++.+.++....  .||++++.|+.++........+||+|++|+|+
T Consensus       137 ~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl~D~Pc  184 (309)
T 2b9e_A          137 AKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSC  184 (309)
T ss_dssp             HHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEECCCC
T ss_pred             HHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEEEcCCc
Confidence            88776665555433  38999999998764321112579999999994

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.51  E-value=4e-14  Score=124.77  Aligned_cols=140  Identities=19%  Similarity=0.141  Sum_probs=95.7

Q ss_pred             eeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCCh
Q 024665           99 AVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSH  178 (264)
Q Consensus        99 ~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~  178 (264)
                      ..|.++.+++|++             .+.++..++      .++++++|||+|||+|.++.++++.+...++|+|+|+++
T Consensus        58 ~~~~~G~~~~qd~-------------~s~l~~~~l------~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~  118 (274)
T 3ajd_A           58 PEYLFGYYMPQSI-------------SSMIPPIVL------NPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISK  118 (274)
T ss_dssp             HHHHTTSEEECCS-------------GGGHHHHHH------CCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCH
T ss_pred             hhhhCCeEEEeCH-------------HHHHHHHHh------CCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCH
Confidence            3567777788876             677777665      478999999999999999999999886668999999998


Q ss_pred             HHHHHHHHHhhcC--CCeEEEEcCCCCchhh-cccCCCccEEEEcCCCchHHH--------HHHHHHhCCCcHHHHHHHH
Q 024665          179 RSGRDLVNMAKKR--TNVIPIIEDARHPAKY-RMLVGMVDVIFSDVAQPDQVC--------FLCLILFQPIVINNLQSVN  247 (264)
Q Consensus       179 ~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~-~~~~~~fD~V~~d~p~~~~~~--------~~~~~~l~~~~~~~l~~~~  247 (264)
                      .+++.+.+++...  .|+++++.|+.++... ....++||+|++|+|+.....        ...+..+.......+..+.
T Consensus       119 ~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~  198 (274)
T 3ajd_A          119 TRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGI  198 (274)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            8776655554432  3899999999876431 001468999999998532111        1111112222445566666


Q ss_pred             HHhh-cchhhh
Q 024665          248 NETK-GGIFEF  257 (264)
Q Consensus       248 ~~Lk-~g~f~~  257 (264)
                      +.|+ +|.+.+
T Consensus       199 ~~LkpgG~lv~  209 (274)
T 3ajd_A          199 DLLKKDGELVY  209 (274)
T ss_dssp             HHEEEEEEEEE
T ss_pred             HhCCCCCEEEE
Confidence            6676 555433

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.51  E-value=2.4e-13  Score=119.11  Aligned_cols=120  Identities=26%  Similarity=0.257  Sum_probs=94.7

Q ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc-----CCCeEEEEcC
Q 024665          126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-----RTNVIPIIED  200 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~-----~~nV~~i~~D  200 (264)
                      +..+..++..++   ++++++|||+|||+|.++..+++.+++.++|+++|+++.+++.+.+....     ..|+++++.|
T Consensus        85 ~~~~~~i~~~~~---~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d  161 (280)
T 1i9g_A           85 PKDAAQIVHEGD---IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSD  161 (280)
T ss_dssp             HHHHHHHHHHTT---CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSC
T ss_pred             HHHHHHHHHHcC---CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECc
Confidence            455666665554   88999999999999999999999887788999999998886655554432     3589999999


Q ss_pred             CCCchhhcccCCCccEEEEcCCCchHHHHHHHHHhCCC--------cHHHHHHHHHHhh
Q 024665          201 ARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCLILFQPI--------VINNLQSVNNETK  251 (264)
Q Consensus       201 ~~~~~~~~~~~~~fD~V~~d~p~~~~~~~~~~~~l~~~--------~~~~l~~~~~~Lk  251 (264)
                      +.+..   ...+.||+|++|++.+++........++|.        ..+++.++.+.|+
T Consensus       162 ~~~~~---~~~~~~D~v~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~  217 (280)
T 1i9g_A          162 LADSE---LPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALR  217 (280)
T ss_dssp             GGGCC---CCTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred             hHhcC---CCCCceeEEEECCcCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHH
Confidence            98753   124689999999999988888888888876        4466777777666

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.50  E-value=2e-14  Score=136.47  Aligned_cols=104  Identities=25%  Similarity=0.244  Sum_probs=84.5

Q ss_pred             eeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCC--CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeC
Q 024665           99 AVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIK--PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEF  176 (264)
Q Consensus        99 ~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~--~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~  176 (264)
                      ..|.++.+++|++             +|++++.++      .++  ++++|||+|||+|.+|+++|+.+.+.++|+|+|+
T Consensus        90 ~~~~~G~~~~Qd~-------------~s~l~~~~L------~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDi  150 (479)
T 2frx_A           90 AEHLSGLFYIQEA-------------SSMLPVAAL------FADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEF  150 (479)
T ss_dssp             HHHHTTSEEECCH-------------HHHHHHHHH------TTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECS
T ss_pred             hHHhCcEEEEECH-------------HHHHHHHHh------CcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEEC
Confidence            4677788888887             788877776      355  9999999999999999999999877789999999


Q ss_pred             ChHHHHHHHHHhhc--CCCeEEEEcCCCCchhhcccCCCccEEEEcCCC
Q 024665          177 SHRSGRDLVNMAKK--RTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       177 s~~~~~~l~~~a~~--~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~  223 (264)
                      |+.+++.+.+++..  ..||++++.|+.++...  ..+.||+|++|+|+
T Consensus       151 s~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~--~~~~fD~Il~D~Pc  197 (479)
T 2frx_A          151 SASRVKVLHANISRCGISNVALTHFDGRVFGAA--VPEMFDAILLDAPC  197 (479)
T ss_dssp             SHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHH--STTCEEEEEEECCC
T ss_pred             CHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhh--ccccCCEEEECCCc
Confidence            98877665555432  23899999999986532  34689999999995

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.49  E-value=1.1e-14  Score=137.73  Aligned_cols=104  Identities=21%  Similarity=0.278  Sum_probs=85.4

Q ss_pred             eeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCCh
Q 024665           99 AVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSH  178 (264)
Q Consensus        99 ~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~  178 (264)
                      ..|.++.+++|++             ++++++.++      .++++++|||+|||+|.+|+++|+.+.+.++|+|+|+|+
T Consensus        76 ~~~~~G~~~vQd~-------------ss~l~a~~L------~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~  136 (464)
T 3m6w_A           76 PFFYAGLYYIQEP-------------SAQAVGVLL------DPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDG  136 (464)
T ss_dssp             HHHHTTSEEECCT-------------TTHHHHHHH------CCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCH
T ss_pred             hHHhCCeEEEECH-------------HHHHHHHhc------CcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCH
Confidence            4688889999998             888888776      478999999999999999999999998778999999998


Q ss_pred             HHHHHHHHHhhcC-CCeEEEEcCCCCchhhcccCCCccEEEEcCCC
Q 024665          179 RSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       179 ~~~~~l~~~a~~~-~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~  223 (264)
                      .+++.+.+++... ..|++++.|+.++..+  ..++||+|++|+|+
T Consensus       137 ~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~--~~~~FD~Il~D~Pc  180 (464)
T 3m6w_A          137 KRVRGLLENVERWGAPLAVTQAPPRALAEA--FGTYFHRVLLDAPC  180 (464)
T ss_dssp             HHHHHHHHHHHHHCCCCEEECSCHHHHHHH--HCSCEEEEEEECCC
T ss_pred             HHHHHHHHHHHHcCCeEEEEECCHHHhhhh--ccccCCEEEECCCc
Confidence            8766655544321 1389999999886532  35789999999995

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.47  E-value=4.4e-13  Score=115.64  Aligned_cols=127  Identities=21%  Similarity=0.224  Sum_probs=98.2

Q ss_pred             CcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEc
Q 024665          123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIE  199 (264)
Q Consensus       123 p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~  199 (264)
                      +..+..+..++..+.   ++++++|||+|||+|.++..+++.+++.++|+++|+++.+++.+.+....   ..++++++.
T Consensus        79 ~~~~~~~~~~~~~~~---~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~  155 (258)
T 2pwy_A           79 PTYPKDASAMVTLLD---LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLG  155 (258)
T ss_dssp             CCCHHHHHHHHHHTT---CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEES
T ss_pred             cccchHHHHHHHHcC---CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEEC
Confidence            334556666665554   88999999999999999999999987788999999999887665555433   258999999


Q ss_pred             CCCCchhhcccCCCccEEEEcCCCchHHHHHHHHHhCCC--------cHHHHHHHHHHhhcchh
Q 024665          200 DARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCLILFQPI--------VINNLQSVNNETKGGIF  255 (264)
Q Consensus       200 D~~~~~~~~~~~~~fD~V~~d~p~~~~~~~~~~~~l~~~--------~~~~l~~~~~~Lk~g~f  255 (264)
                      |+.+.+   ...+.||+|++|++.++.........++|.        ...++.+..+.|+...|
T Consensus       156 d~~~~~---~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf  216 (258)
T 2pwy_A          156 KLEEAE---LEEAAYDGVALDLMEPWKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPF  216 (258)
T ss_dssp             CGGGCC---CCTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTE
T ss_pred             chhhcC---CCCCCcCEEEECCcCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC
Confidence            998752   123589999999999888888888888876        44567777777764334

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.45  E-value=6.9e-13  Score=116.53  Aligned_cols=119  Identities=22%  Similarity=0.224  Sum_probs=93.4

Q ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCC
Q 024665          126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDAR  202 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~  202 (264)
                      ++.+..++..++   +.++++|||+|||+|.+++.++..+++.++|+++|+++.+++.+.+.....   .++++++.|+.
T Consensus        98 ~~~~~~i~~~~~---~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  174 (277)
T 1o54_A           98 PKDSSFIAMMLD---VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDIS  174 (277)
T ss_dssp             HHHHHHHHHHTT---CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGG
T ss_pred             HHHHHHHHHHhC---CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHH
Confidence            455555655544   889999999999999999999999877889999999988876655544332   47999999997


Q ss_pred             CchhhcccCCCccEEEEcCCCchHHHHHHHHHhCCC--------cHHHHHHHHHHhh
Q 024665          203 HPAKYRMLVGMVDVIFSDVAQPDQVCFLCLILFQPI--------VINNLQSVNNETK  251 (264)
Q Consensus       203 ~~~~~~~~~~~fD~V~~d~p~~~~~~~~~~~~l~~~--------~~~~l~~~~~~Lk  251 (264)
                      +..    ..+.||+|++|+|.++.........++|.        ...++.++.+.|+
T Consensus       175 ~~~----~~~~~D~V~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~  227 (277)
T 1o54_A          175 EGF----DEKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQ  227 (277)
T ss_dssp             GCC----SCCSEEEEEECCSCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred             Hcc----cCCccCEEEECCcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHH
Confidence            752    23589999999999988888888888876        3456777777776

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.44  E-value=1.7e-12  Score=117.31  Aligned_cols=121  Identities=21%  Similarity=0.190  Sum_probs=89.3

Q ss_pred             HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc-------------CCC
Q 024665          127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-------------RTN  193 (264)
Q Consensus       127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~-------------~~n  193 (264)
                      ..+..++..++   +.++++|||+|||+|.++..++..+++.++|+++|+++.+++.+.+....             ..|
T Consensus        92 ~~~~~~l~~l~---~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~  168 (336)
T 2b25_A           92 KDINMILSMMD---INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDN  168 (336)
T ss_dssp             HHHHHHHHHHT---CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCC
T ss_pred             HHHHHHHHhcC---CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCc
Confidence            34555554444   88999999999999999999999887778999999999886665554432             258


Q ss_pred             eEEEEcCCCCchhhcccCCCccEEEEcCCCchHHHHHHHHHhCCC--------cHHHHHHHHHHhh
Q 024665          194 VIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCLILFQPI--------VINNLQSVNNETK  251 (264)
Q Consensus       194 V~~i~~D~~~~~~~~~~~~~fD~V~~d~p~~~~~~~~~~~~l~~~--------~~~~l~~~~~~Lk  251 (264)
                      |+++++|+.+.... ...++||+|++|++.|+.........++|+        ...++.++++.|+
T Consensus       169 v~~~~~d~~~~~~~-~~~~~fD~V~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~  233 (336)
T 2b25_A          169 VDFIHKDISGATED-IKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIR  233 (336)
T ss_dssp             EEEEESCTTCCC--------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred             eEEEECChHHcccc-cCCCCeeEEEECCCCHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHH
Confidence            99999999875311 123579999999998888777777777776        4556666666655

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.41  E-value=1.4e-12  Score=114.52  Aligned_cols=109  Identities=17%  Similarity=0.169  Sum_probs=88.0

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCCCchhhcccCCCccE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV  216 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~~~~~~~~~~~~fD~  216 (264)
                      .++++++|||+|||+|.++..+++.+.+..+|+++|+++.+++.+.+.....   .|+++++.|+.++.    ..++||+
T Consensus       107 ~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~----~~~~fD~  182 (275)
T 1yb2_A          107 GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFI----SDQMYDA  182 (275)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCC----CSCCEEE
T ss_pred             CCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccC----cCCCccE
Confidence            4889999999999999999999998777789999999998877666655444   48999999998732    2368999


Q ss_pred             EEEcCCCchHHHHHHHHHhCCC--------cHHHHHHHHHHhhc
Q 024665          217 IFSDVAQPDQVCFLCLILFQPI--------VINNLQSVNNETKG  252 (264)
Q Consensus       217 V~~d~p~~~~~~~~~~~~l~~~--------~~~~l~~~~~~Lk~  252 (264)
                      |++|+|.++.........++|.        ...++.++.+.|+.
T Consensus       183 Vi~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~  226 (275)
T 1yb2_A          183 VIADIPDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSA  226 (275)
T ss_dssp             EEECCSCGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGG
T ss_pred             EEEcCcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence            9999998888877788888876        33455666666663

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.40  E-value=4.4e-13  Score=111.27  Aligned_cols=81  Identities=17%  Similarity=0.333  Sum_probs=67.4

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcccCCCccE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVDV  216 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~~~~fD~  216 (264)
                      .++++++|||+|||+|.++..+++.+++.++|+++|+|+.+++.+.+....   ..++++++.|+.++..+  ..++||+
T Consensus        19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~fD~   96 (197)
T 3eey_A           19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKY--IDCPVKA   96 (197)
T ss_dssp             HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGT--CCSCEEE
T ss_pred             cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhh--ccCCceE
Confidence            378999999999999999999999987778999999999887665555443   24899999999886542  3478999


Q ss_pred             EEEcCC
Q 024665          217 IFSDVA  222 (264)
Q Consensus       217 V~~d~p  222 (264)
                      |++|++
T Consensus        97 v~~~~~  102 (197)
T 3eey_A           97 VMFNLG  102 (197)
T ss_dssp             EEEEES
T ss_pred             EEEcCC
Confidence            999986

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.38  E-value=2.6e-13  Score=127.84  Aligned_cols=105  Identities=30%  Similarity=0.467  Sum_probs=82.7

Q ss_pred             eeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCCh
Q 024665           99 AVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSH  178 (264)
Q Consensus        99 ~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~  178 (264)
                      ..|.++.+++|++             +++++..++      .++++++|||+|||+|.++.++++.+...++|+++|+++
T Consensus       234 ~~~~~G~~~~qd~-------------~s~l~~~~l------~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~  294 (450)
T 2yxl_A          234 SAFNEGKIIVQEE-------------ASAVASIVL------DPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDK  294 (450)
T ss_dssp             HHHHTTSEEECCH-------------HHHHHHHHH------CCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCH
T ss_pred             chhhCceEEecCc-------------hhHHHHHhc------CCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCH
Confidence            3566777788876             777777766      488999999999999999999999986668999999998


Q ss_pred             HHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEEcCCC
Q 024665          179 RSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       179 ~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~  223 (264)
                      .+++.+.++....  .||++++.|+.++... ...++||+|++|+|+
T Consensus       295 ~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~-~~~~~fD~Vl~D~Pc  340 (450)
T 2yxl_A          295 MRMKRLKDFVKRMGIKIVKPLVKDARKAPEI-IGEEVADKVLLDAPC  340 (450)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEECSCTTCCSSS-SCSSCEEEEEEECCC
T ss_pred             HHHHHHHHHHHHcCCCcEEEEEcChhhcchh-hccCCCCEEEEcCCC
Confidence            8766655554432  3899999999886531 112579999999994

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.37  E-value=3.3e-12  Score=113.20  Aligned_cols=92  Identities=17%  Similarity=0.063  Sum_probs=70.5

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHh---hcCCCeEEEEcCCCCchhhcccCCCccEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA---KKRTNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a---~~~~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      ++++++|||++||+|.+++.+|..  .+.+|+|+|+|+.+++.+.+++   ....+|+++++|++++..    ...||.|
T Consensus       123 ~~~g~~VlD~~aG~G~~~i~~a~~--g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~----~~~~D~V  196 (278)
T 3k6r_A          123 AKPDELVVDMFAGIGHLSLPIAVY--GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG----ENIADRI  196 (278)
T ss_dssp             CCTTCEEEETTCTTTTTTHHHHHH--TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC----CSCEEEE
T ss_pred             cCCCCEEEEecCcCcHHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc----ccCCCEE
Confidence            679999999999999999999987  4568999999988765554444   444579999999998753    3689999


Q ss_pred             EEcCCC-chHHHHHHHHHhCCC
Q 024665          218 FSDVAQ-PDQVCFLCLILFQPI  238 (264)
Q Consensus       218 ~~d~p~-~~~~~~~~~~~l~~~  238 (264)
                      ++|+|. ..+....++..++++
T Consensus       197 i~~~p~~~~~~l~~a~~~lk~g  218 (278)
T 3k6r_A          197 LMGYVVRTHEFIPKALSIAKDG  218 (278)
T ss_dssp             EECCCSSGGGGHHHHHHHEEEE
T ss_pred             EECCCCcHHHHHHHHHHHcCCC
Confidence            999883 334444455555543

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.36  E-value=1.9e-12  Score=112.69  Aligned_cols=81  Identities=11%  Similarity=0.114  Sum_probs=64.0

Q ss_pred             CCC-CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcccCCCcc
Q 024665          140 WIK-PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVD  215 (264)
Q Consensus       140 ~l~-~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~~~~fD  215 (264)
                      .++ ++.+|||+|||+|.+++.+++..  ..+|+++|+++.+++.+.+....   ..+|++++.|+.++... ...++||
T Consensus        45 ~~~~~~~~vLDlG~G~G~~~~~la~~~--~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~-~~~~~fD  121 (259)
T 3lpm_A           45 YLPIRKGKIIDLCSGNGIIPLLLSTRT--KAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDL-IPKERAD  121 (259)
T ss_dssp             CCCSSCCEEEETTCTTTHHHHHHHTTC--CCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGT-SCTTCEE
T ss_pred             cCCCCCCEEEEcCCchhHHHHHHHHhc--CCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhh-hccCCcc
Confidence            367 89999999999999999999873  34999999998886555554433   23799999999886532 2246899


Q ss_pred             EEEEcCCC
Q 024665          216 VIFSDVAQ  223 (264)
Q Consensus       216 ~V~~d~p~  223 (264)
                      +|++|+|.
T Consensus       122 ~Ii~npPy  129 (259)
T 3lpm_A          122 IVTCNPPY  129 (259)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999983

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.35  E-value=6e-12  Score=110.36  Aligned_cols=80  Identities=20%  Similarity=0.216  Sum_probs=65.2

Q ss_pred             ccCCCCCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcccCCC
Q 024665          138 NIWIKPGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGM  213 (264)
Q Consensus       138 ~~~l~~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~~~~  213 (264)
                      +..++|+++|||||||+|.++..|++.+. +..+|+|||+|+.|++.+.+....   ..+|+++++|+.+++     .+.
T Consensus        65 ~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~-----~~~  139 (261)
T 4gek_A           65 ERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA-----IEN  139 (261)
T ss_dssp             HHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCC-----CCS
T ss_pred             HHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccc-----ccc
Confidence            34588999999999999999999998875 345999999999997766665443   238999999998864     257


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      ||+|++...
T Consensus       140 ~d~v~~~~~  148 (261)
T 4gek_A          140 ASMVVLNFT  148 (261)
T ss_dssp             EEEEEEESC
T ss_pred             cccceeeee
Confidence            999998765

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.34  E-value=4.3e-12  Score=104.91  Aligned_cols=96  Identities=17%  Similarity=0.056  Sum_probs=70.9

Q ss_pred             chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCC
Q 024665          125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDAR  202 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~  202 (264)
                      ...+...++..+......++.+|||+|||+|.+++.++..  +..+|+++|+|+.+++.+.+.+...  .+++++++|+.
T Consensus        26 ~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~  103 (189)
T 3p9n_A           26 TDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSR--GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVA  103 (189)
T ss_dssp             CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHH
T ss_pred             cHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHC--CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHH
Confidence            4455555655554322368899999999999999988875  4568999999998876555544332  48999999998


Q ss_pred             CchhhcccCCCccEEEEcCCC
Q 024665          203 HPAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       203 ~~~~~~~~~~~fD~V~~d~p~  223 (264)
                      ++... ...++||+|++|+|.
T Consensus       104 ~~~~~-~~~~~fD~i~~~~p~  123 (189)
T 3p9n_A          104 AVVAA-GTTSPVDLVLADPPY  123 (189)
T ss_dssp             HHHHH-CCSSCCSEEEECCCT
T ss_pred             HHHhh-ccCCCccEEEECCCC
Confidence            76531 124789999999983

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=99.34  E-value=1.1e-12  Score=120.10  Aligned_cols=91  Identities=22%  Similarity=0.116  Sum_probs=71.6

Q ss_pred             chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh---c-----CCCeEE
Q 024665          125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK---K-----RTNVIP  196 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~---~-----~~nV~~  196 (264)
                      +|++++.++      .++||++|||+||++|.+|++||+.+ ..+.|+|+|+++.-++.+.++..   .     ..||++
T Consensus       136 aS~l~~~~L------~~~pg~~VLD~CAaPGGKT~~la~~~-~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v  208 (359)
T 4fzv_A          136 ASLLPVLAL------GLQPGDIVLDLCAAPGGKTLALLQTG-CCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRV  208 (359)
T ss_dssp             GGHHHHHHH------CCCTTEEEEESSCTTCHHHHHHHHTT-CEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEE
T ss_pred             HHHHHHHHh------CCCCCCEEEEecCCccHHHHHHHHhc-CCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEE
Confidence            899999887      69999999999999999999999875 46789999999544333333222   1     138999


Q ss_pred             EEcCCCCchhhcccCCCccEEEEcCCCc
Q 024665          197 IIEDARHPAKYRMLVGMVDVIFSDVAQP  224 (264)
Q Consensus       197 i~~D~~~~~~~~~~~~~fD~V~~d~p~~  224 (264)
                      ++.|++.+...  ..+.||.|++|+|+.
T Consensus       209 ~~~D~~~~~~~--~~~~fD~VLlDaPCS  234 (359)
T 4fzv_A          209 TSWDGRKWGEL--EGDTYDRVLVDVPCT  234 (359)
T ss_dssp             ECCCGGGHHHH--STTCEEEEEEECCCC
T ss_pred             EeCchhhcchh--ccccCCEEEECCccC
Confidence            99999887542  346899999999954

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.34  E-value=6.8e-13  Score=124.17  Aligned_cols=103  Identities=19%  Similarity=0.243  Sum_probs=80.0

Q ss_pred             eeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChH
Q 024665          100 VYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHR  179 (264)
Q Consensus       100 vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~  179 (264)
                      .|.++.+++|++             .++++..++      .++++++|||+|||+|.++.++++.+. .++|+|+|+++.
T Consensus       222 ~~~~G~~~~qd~-------------~s~~~~~~l------~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~~~~  281 (429)
T 1sqg_A          222 GFEDGWVTVQDA-------------SAQGCMTWL------APQNGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDEQ  281 (429)
T ss_dssp             TGGGTSEEECCH-------------HHHTHHHHH------CCCTTCEEEEESCTTCHHHHHHHHHCT-TCEEEEEESSTT
T ss_pred             HHhCCCeEeeCH-------------HHHHHHHHc------CCCCcCeEEEECCCchHHHHHHHHHcC-CCEEEEECCCHH
Confidence            466677777776             677777766      478999999999999999999999874 489999999987


Q ss_pred             HHHHHHHHhhcC-CCeEEEEcCCCCchhhcccCCCccEEEEcCCC
Q 024665          180 SGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       180 ~~~~l~~~a~~~-~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~  223 (264)
                      +++.+.++.... .++++++.|+.++... ...++||+|++|+|+
T Consensus       282 ~l~~~~~~~~~~g~~~~~~~~D~~~~~~~-~~~~~fD~Vl~D~Pc  325 (429)
T 1sqg_A          282 RLSRVYDNLKRLGMKATVKQGDGRYPSQW-CGEQQFDRILLDAPC  325 (429)
T ss_dssp             THHHHHHHHHHTTCCCEEEECCTTCTHHH-HTTCCEEEEEEECCC
T ss_pred             HHHHHHHHHHHcCCCeEEEeCchhhchhh-cccCCCCEEEEeCCC
Confidence            665555544332 3689999999887532 123589999999994

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.34  E-value=5.6e-12  Score=110.16  Aligned_cols=117  Identities=13%  Similarity=0.075  Sum_probs=77.9

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---C---CCeEEEEcCCCCchhh----ccc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---R---TNVIPIIEDARHPAKY----RML  210 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~---~nV~~i~~D~~~~~~~----~~~  210 (264)
                      ++++.+|||+|||+|.+++.++... +..+|++||+++.+++.+.+....   .   .++++++.|+.++...    ...
T Consensus        34 ~~~~~~VLDlG~G~G~~~l~la~~~-~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~  112 (260)
T 2ozv_A           34 DDRACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLP  112 (260)
T ss_dssp             CCSCEEEEECCSSSSHHHHHHHHHC-TTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCC
T ss_pred             ccCCCEEEEeCChHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccC
Confidence            6788899999999999999999985 467999999999887665555443   2   2599999999987321    012


Q ss_pred             CCCccEEEEcCCCchH--------HHHHHHHHhCCCcHHHHHHHHHHhh-cchhhhh
Q 024665          211 VGMVDVIFSDVAQPDQ--------VCFLCLILFQPIVINNLQSVNNETK-GGIFEFL  258 (264)
Q Consensus       211 ~~~fD~V~~d~p~~~~--------~~~~~~~~l~~~~~~~l~~~~~~Lk-~g~f~~l  258 (264)
                      .++||+|++|+|....        ....++..........+..+.+.|+ +|.+.++
T Consensus       113 ~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~  169 (260)
T 2ozv_A          113 DEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLI  169 (260)
T ss_dssp             TTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEE
Confidence            4689999999984322        1111111111224555666677777 6666554

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.32  E-value=5.3e-11  Score=99.38  Aligned_cols=118  Identities=16%  Similarity=0.120  Sum_probs=85.6

Q ss_pred             HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCc
Q 024665          127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHP  204 (264)
Q Consensus       127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~  204 (264)
                      .+.+.++..+.   ++++++|||+|||+|.+++.+++. .+..+|+++|+|+.+++.+.+.....  .++++++.|+.+.
T Consensus        27 ~i~~~~l~~l~---~~~~~~vLDiG~G~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~  102 (204)
T 3e05_A           27 EVRAVTLSKLR---LQDDLVMWDIGAGSASVSIEASNL-MPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEG  102 (204)
T ss_dssp             HHHHHHHHHTT---CCTTCEEEEETCTTCHHHHHHHHH-CTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTT
T ss_pred             HHHHHHHHHcC---CCCCCEEEEECCCCCHHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhh
Confidence            34344554444   889999999999999999999988 45789999999998866655544322  5899999999765


Q ss_pred             hhhcccCCCccEEEEcCCC--chHHHHHHHHHhCCC--------cHHHHHHHHHHhh
Q 024665          205 AKYRMLVGMVDVIFSDVAQ--PDQVCFLCLILFQPI--------VINNLQSVNNETK  251 (264)
Q Consensus       205 ~~~~~~~~~fD~V~~d~p~--~~~~~~~~~~~l~~~--------~~~~l~~~~~~Lk  251 (264)
                      ..   ..+.||+|+++.+.  +..........++|.        .......+.+.++
T Consensus       103 ~~---~~~~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~  156 (204)
T 3e05_A          103 LD---DLPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLE  156 (204)
T ss_dssp             CT---TSCCCSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHH
T ss_pred             hh---cCCCCCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHH
Confidence            42   22679999999773  445556666777777        3345555566665

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.31  E-value=3.9e-12  Score=104.48  Aligned_cols=78  Identities=10%  Similarity=0.155  Sum_probs=62.3

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      .++++++|||+|||+|.++..+++.   ..+|+++|+|+.+++.+.+.+...  .|+++++.|+.++..+  ..++||+|
T Consensus        19 ~~~~~~~vLDiGcG~G~~~~~la~~---~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~--~~~~fD~v   93 (185)
T 3mti_A           19 VLDDESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHY--VREPIRAA   93 (185)
T ss_dssp             TCCTTCEEEESCCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGT--CCSCEEEE
T ss_pred             hCCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhh--ccCCcCEE
Confidence            4789999999999999999999987   569999999998876655554322  5899999887765433  35689999


Q ss_pred             EEcCC
Q 024665          218 FSDVA  222 (264)
Q Consensus       218 ~~d~p  222 (264)
                      +++++
T Consensus        94 ~~~~~   98 (185)
T 3mti_A           94 IFNLG   98 (185)
T ss_dssp             EEEEC
T ss_pred             EEeCC
Confidence            99854

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.30  E-value=8.1e-11  Score=99.04  Aligned_cols=115  Identities=10%  Similarity=0.077  Sum_probs=83.0

Q ss_pred             HHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--C-CeEEEEcCCCCc
Q 024665          128 LAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--T-NVIPIIEDARHP  204 (264)
Q Consensus       128 l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~-nV~~i~~D~~~~  204 (264)
                      +...++..+.   +.++++|||+|||+|.+++.+|..   ..+|+++|+|+.+++.+.+.+...  . |++++++|+.+.
T Consensus        43 ~~~~~l~~l~---~~~~~~vLDlGcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~  116 (204)
T 3njr_A           43 MRALTLAALA---PRRGELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAA  116 (204)
T ss_dssp             HHHHHHHHHC---CCTTCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGG
T ss_pred             HHHHHHHhcC---CCCCCEEEEecCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhh
Confidence            3344444444   889999999999999999999987   468999999998876655554332  3 899999999884


Q ss_pred             hhhcccCCCccEEEEcCCCchHHHHHHHHHhCCC--------cHHHHHHHHHHhh
Q 024665          205 AKYRMLVGMVDVIFSDVAQPDQVCFLCLILFQPI--------VINNLQSVNNETK  251 (264)
Q Consensus       205 ~~~~~~~~~fD~V~~d~p~~~~~~~~~~~~l~~~--------~~~~l~~~~~~Lk  251 (264)
                      ..   ..+.||+|+++..............++|.        ..+.+..+.+.++
T Consensus       117 ~~---~~~~~D~v~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~  168 (204)
T 3njr_A          117 LA---DLPLPEAVFIGGGGSQALYDRLWEWLAPGTRIVANAVTLESETLLTQLHA  168 (204)
T ss_dssp             GT---TSCCCSEEEECSCCCHHHHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHH
T ss_pred             cc---cCCCCCEEEECCcccHHHHHHHHHhcCCCcEEEEEecCcccHHHHHHHHH
Confidence            32   23579999998764222555666777776        3455666666665

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.29  E-value=1.8e-11  Score=105.31  Aligned_cols=112  Identities=23%  Similarity=0.136  Sum_probs=82.5

Q ss_pred             ceEeCCcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCe
Q 024665          118 YRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNV  194 (264)
Q Consensus       118 yr~~~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV  194 (264)
                      ++.+.|.....+..++..+.   ++++.+|||+|||+|.++..+++.+  ..+|+++|+|+.+++.+.+.+...   .||
T Consensus        14 ~~~~~~~~~~~~~~l~~~~~---~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v   88 (256)
T 1nkv_A           14 HRIHNPFTEEKYATLGRVLR---MKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERV   88 (256)
T ss_dssp             CSSSSSCCHHHHHHHHHHTC---CCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTE
T ss_pred             ccccCCCCHHHHHHHHHhcC---CCCCCEEEEECCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCcce
Confidence            44566777777777776555   8899999999999999999999986  358999999998876666555432   489


Q ss_pred             EEEEcCCCCchhhcccCCCccEEEEcCC-----CchHHHHHHHHHhCCC
Q 024665          195 IPIIEDARHPAKYRMLVGMVDVIFSDVA-----QPDQVCFLCLILFQPI  238 (264)
Q Consensus       195 ~~i~~D~~~~~~~~~~~~~fD~V~~d~p-----~~~~~~~~~~~~l~~~  238 (264)
                      ++++.|+.+.+   . .++||+|++...     .+..........++|+
T Consensus        89 ~~~~~d~~~~~---~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~Lkpg  133 (256)
T 1nkv_A           89 HFIHNDAAGYV---A-NEKCDVAACVGATWIAGGFAGAEELLAQSLKPG  133 (256)
T ss_dssp             EEEESCCTTCC---C-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEE
T ss_pred             EEEECChHhCC---c-CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCC
Confidence            99999998864   2 578999998543     2334444444444444

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.29  E-value=1.6e-11  Score=111.82  Aligned_cols=94  Identities=28%  Similarity=0.315  Sum_probs=74.6

Q ss_pred             cchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC--CeEEEEcCC
Q 024665          124 FRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT--NVIPIIEDA  201 (264)
Q Consensus       124 ~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~--nV~~i~~D~  201 (264)
                      ....+++.++..+.   ++++.+|||+|||+|++++.+|...++..+|+++|+|+.+++.+.+++....  +|++++.|+
T Consensus       187 l~~~la~~l~~~~~---~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~  263 (354)
T 3tma_A          187 LTPVLAQALLRLAD---ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADA  263 (354)
T ss_dssp             CCHHHHHHHHHHTT---CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCG
T ss_pred             cCHHHHHHHHHHhC---CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCCh
Confidence            34667777765544   7889999999999999999999987566799999999988766655554332  899999999


Q ss_pred             CCchhhcccCCCccEEEEcCCC
Q 024665          202 RHPAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       202 ~~~~~~~~~~~~fD~V~~d~p~  223 (264)
                      .+++.   ....||+|++|+|.
T Consensus       264 ~~~~~---~~~~~D~Ii~npPy  282 (354)
T 3tma_A          264 RHLPR---FFPEVDRILANPPH  282 (354)
T ss_dssp             GGGGG---TCCCCSEEEECCCS
T ss_pred             hhCcc---ccCCCCEEEECCCC
Confidence            98653   23568999999994

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.29  E-value=1.3e-11  Score=104.85  Aligned_cols=80  Identities=19%  Similarity=0.179  Sum_probs=64.5

Q ss_pred             CCCCCCEEEEEccc-CChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC-CeEEEEcCCCCchhhcccCCCccEE
Q 024665          140 WIKPGARVLYLGAA-SGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT-NVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       140 ~l~~g~~VLDlG~G-~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~-nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      .++++.+|||+||| +|.+++.++...  ..+|+++|+|+.+++.+.+.+.... +++++++|+..+..+  ..++||+|
T Consensus        52 ~~~~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~--~~~~fD~I  127 (230)
T 3evz_A           52 FLRGGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGV--VEGTFDVI  127 (230)
T ss_dssp             TCCSSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTT--CCSCEEEE
T ss_pred             hcCCCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhc--ccCceeEE
Confidence            36789999999999 999999999985  5699999999988766655554333 899999998655432  23689999


Q ss_pred             EEcCCC
Q 024665          218 FSDVAQ  223 (264)
Q Consensus       218 ~~d~p~  223 (264)
                      ++|+|.
T Consensus       128 ~~npp~  133 (230)
T 3evz_A          128 FSAPPY  133 (230)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999983

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.28  E-value=9.4e-11  Score=100.29  Aligned_cols=119  Identities=18%  Similarity=0.135  Sum_probs=90.1

Q ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCC
Q 024665          126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDAR  202 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~  202 (264)
                      ...+..++..+   .+.++++|||+|||+|.++..++..   ..+|+++|+++.+++.+.+....   ..++++++.|+.
T Consensus        77 ~~~~~~~~~~~---~~~~~~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~  150 (248)
T 2yvl_A           77 PKDSFYIALKL---NLNKEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFK  150 (248)
T ss_dssp             HHHHHHHHHHT---TCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTT
T ss_pred             chhHHHHHHhc---CCCCCCEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChh
Confidence            33444444333   3789999999999999999999988   46999999998886655554432   258999999998


Q ss_pred             CchhhcccCCCccEEEEcCCCchHHHHHHHHHhCCC--------cHHHHHHHHHHhhcc
Q 024665          203 HPAKYRMLVGMVDVIFSDVAQPDQVCFLCLILFQPI--------VINNLQSVNNETKGG  253 (264)
Q Consensus       203 ~~~~~~~~~~~fD~V~~d~p~~~~~~~~~~~~l~~~--------~~~~l~~~~~~Lk~g  253 (264)
                      +...   ....||+|+++++.++.........++|.        ...++.++.+.|+..
T Consensus       151 ~~~~---~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~  206 (248)
T 2yvl_A          151 DAEV---PEGIFHAAFVDVREPWHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIENY  206 (248)
T ss_dssp             TSCC---CTTCBSEEEECSSCGGGGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHSTTT
T ss_pred             hccc---CCCcccEEEECCcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhh
Confidence            7431   23589999999998888888888888887        345677777777643

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.26  E-value=2.2e-11  Score=107.17  Aligned_cols=94  Identities=18%  Similarity=0.170  Sum_probs=75.0

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      .++++++|||+|||+|.+++.+|.... .++|+++|+++.+++.+.+++..+  .|++++++|+.+. +.   .++||+|
T Consensus       116 ~~~~~~~VLDlgcG~G~~s~~la~~~~-~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~---~~~~D~V  190 (272)
T 3a27_A          116 ISNENEVVVDMFAGIGYFTIPLAKYSK-PKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-EL---KDVADRV  190 (272)
T ss_dssp             SCCTTCEEEETTCTTTTTHHHHHHHTC-CSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CC---TTCEEEE
T ss_pred             hcCCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-Cc---cCCceEE
Confidence            377899999999999999999999853 679999999998877766665544  3899999999886 32   4689999


Q ss_pred             EEcCC-CchHHHHHHHHHhCCC
Q 024665          218 FSDVA-QPDQVCFLCLILFQPI  238 (264)
Q Consensus       218 ~~d~p-~~~~~~~~~~~~l~~~  238 (264)
                      ++|+| ........++..++|.
T Consensus       191 i~d~p~~~~~~l~~~~~~Lkpg  212 (272)
T 3a27_A          191 IMGYVHKTHKFLDKTFEFLKDR  212 (272)
T ss_dssp             EECCCSSGGGGHHHHHHHEEEE
T ss_pred             EECCcccHHHHHHHHHHHcCCC
Confidence            99999 4455555566666665

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.26  E-value=8e-11  Score=99.19  Aligned_cols=95  Identities=12%  Similarity=0.124  Sum_probs=71.8

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      .++.+|||+|||+|.+++.+|... +..+|++||+|+.+++.+.+.+...  .||++++.|+.++... ...++||+|++
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~~~D~i~~  117 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDY-FEDGEIDRLYL  117 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGT-SCTTCCSEEEE
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHC-CCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhh-cCCCCCCEEEE
Confidence            467899999999999999999885 5679999999998876655554322  5899999999885421 22468999999


Q ss_pred             cCCCch-------------HHHHHHHHHhCCC
Q 024665          220 DVAQPD-------------QVCFLCLILFQPI  238 (264)
Q Consensus       220 d~p~~~-------------~~~~~~~~~l~~~  238 (264)
                      +.|.|+             .........++|+
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  149 (214)
T 1yzh_A          118 NFSDPWPKKRHEKRRLTYKTFLDTFKRILPEN  149 (214)
T ss_dssp             ESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTT
T ss_pred             ECCCCccccchhhhccCCHHHHHHHHHHcCCC
Confidence            988653             3444445556666

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.25  E-value=5.3e-11  Score=104.97  Aligned_cols=92  Identities=16%  Similarity=0.033  Sum_probs=71.1

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCCCchhhcccCCCccEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      ++++++|||+|||+|.+++.+|.... . +|+++|+|+.+++.+.+++..+   .+++++++|+.++..    ..+||+|
T Consensus       123 ~~~~~~VLDlgcG~G~~~~~la~~~~-~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~----~~~fD~V  196 (278)
T 2frn_A          123 AKPDELVVDMFAGIGHLSLPIAVYGK-A-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG----ENIADRI  196 (278)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTC-C-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC----CSCEEEE
T ss_pred             CCCCCEEEEecccCCHHHHHHHHhCC-C-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc----cCCccEE
Confidence            57899999999999999999998843 3 8999999998876665554432   359999999998753    4689999


Q ss_pred             EEcCCCc-hHHHHHHHHHhCCC
Q 024665          218 FSDVAQP-DQVCFLCLILFQPI  238 (264)
Q Consensus       218 ~~d~p~~-~~~~~~~~~~l~~~  238 (264)
                      ++|+|.. ..........++|+
T Consensus       197 i~~~p~~~~~~l~~~~~~Lkpg  218 (278)
T 2frn_A          197 LMGYVVRTHEFIPKALSIAKDG  218 (278)
T ss_dssp             EECCCSSGGGGHHHHHHHEEEE
T ss_pred             EECCchhHHHHHHHHHHHCCCC
Confidence            9999843 34444556666665

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.24  E-value=6e-12  Score=105.21  Aligned_cols=86  Identities=19%  Similarity=0.217  Sum_probs=63.0

Q ss_pred             chHHHHHHHhcccccC-CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCC
Q 024665          125 RSKLAAAVLGGVDNIW-IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARH  203 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~-l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~  203 (264)
                      ++.-+-+++..++++. ++++.+|||||||+|.++..+++.   .++|+|||+++..         ...+|+++++|+++
T Consensus         6 r~Ra~~KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~~---------~~~~v~~~~~D~~~   73 (191)
T 3dou_A            6 RSRAAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEME---------EIAGVRFIRCDIFK   73 (191)
T ss_dssp             TSHHHHHHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCCC---------CCTTCEEEECCTTS
T ss_pred             CCcHHHHHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc---CCcEEEEeccccc---------cCCCeEEEEccccC
Confidence            4444444444444433 678999999999999999999987   5799999999731         23589999999988


Q ss_pred             chhhc----ccC----CCccEEEEcCC
Q 024665          204 PAKYR----MLV----GMVDVIFSDVA  222 (264)
Q Consensus       204 ~~~~~----~~~----~~fD~V~~d~p  222 (264)
                      .....    .+.    ++||+|++|++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~D~Vlsd~~  100 (191)
T 3dou_A           74 ETIFDDIDRALREEGIEKVDDVVSDAM  100 (191)
T ss_dssp             SSHHHHHHHHHHHHTCSSEEEEEECCC
T ss_pred             HHHHHHHHHHhhcccCCcceEEecCCC
Confidence            54211    011    48999999987

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.23  E-value=5.9e-11  Score=103.16  Aligned_cols=95  Identities=16%  Similarity=0.168  Sum_probs=74.0

Q ss_pred             eCCcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEE
Q 024665          121 WNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPI  197 (264)
Q Consensus       121 ~~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i  197 (264)
                      +.|........++..+.  .++++.+|||+|||+|.++..+++.  +..+|+++|+|+.+++.+.+.....   ++|+++
T Consensus        26 ~~~~~~~~~~~~l~~l~--~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~  101 (267)
T 3kkz_A           26 QGPGSPEVTLKALSFID--NLTEKSLIADIGCGTGGQTMVLAGH--VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGI  101 (267)
T ss_dssp             SSSCCHHHHHHHHTTCC--CCCTTCEEEEETCTTCHHHHHHHTT--CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred             cCCCCHHHHHHHHHhcc--cCCCCCEEEEeCCCCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEE
Confidence            44545566666665555  5788999999999999999999987  5679999999998876665554433   479999


Q ss_pred             EcCCCCchhhcccCCCccEEEEcCC
Q 024665          198 IEDARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       198 ~~D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      +.|+.+++   ...++||+|++..+
T Consensus       102 ~~d~~~~~---~~~~~fD~i~~~~~  123 (267)
T 3kkz_A          102 VGSMDDLP---FRNEELDLIWSEGA  123 (267)
T ss_dssp             ECCTTSCC---CCTTCEEEEEESSC
T ss_pred             EcChhhCC---CCCCCEEEEEEcCC
Confidence            99998864   23468999999766

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.23  E-value=3.6e-11  Score=97.93  Aligned_cols=91  Identities=20%  Similarity=0.166  Sum_probs=67.9

Q ss_pred             HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCCC
Q 024665          127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARH  203 (264)
Q Consensus       127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~~  203 (264)
                      .+...++..+.  .+.++.+|||+|||+|.+++.++..  +..+|+++|+|+.+++.+.+.....   .++++++.|+.+
T Consensus        17 ~~~~~~~~~l~--~~~~~~~vLDlGcG~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   92 (177)
T 2esr_A           17 KVRGAIFNMIG--PYFNGGRVLDLFAGSGGLAIEAVSR--GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAER   92 (177)
T ss_dssp             -CHHHHHHHHC--SCCCSCEEEEETCTTCHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHH
T ss_pred             HHHHHHHHHHH--hhcCCCeEEEeCCCCCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHH
Confidence            34444444443  2567889999999999999999986  4569999999998876666655443   379999999987


Q ss_pred             chhhcccCCCccEEEEcCCC
Q 024665          204 PAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       204 ~~~~~~~~~~fD~V~~d~p~  223 (264)
                      ..+  ...++||+|++|+|.
T Consensus        93 ~~~--~~~~~fD~i~~~~~~  110 (177)
T 2esr_A           93 AID--CLTGRFDLVFLDPPY  110 (177)
T ss_dssp             HHH--HBCSCEEEEEECCSS
T ss_pred             hHH--hhcCCCCEEEECCCC
Confidence            432  234679999999874

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.23  E-value=6.1e-11  Score=98.98  Aligned_cols=88  Identities=18%  Similarity=0.101  Sum_probs=67.1

Q ss_pred             HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC-CeEEEEcCCCCch
Q 024665          127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT-NVIPIIEDARHPA  205 (264)
Q Consensus       127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~-nV~~i~~D~~~~~  205 (264)
                      .++..++..+....+.++.+|||+|||+|.++..++..  ...+|+++|+|+.+++.+.+...... +++++++|+.+++
T Consensus        33 ~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~  110 (207)
T 1wy7_A           33 NAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLL--GAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN  110 (207)
T ss_dssp             HHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC
T ss_pred             HHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcC
Confidence            34444443333334668899999999999999999986  34589999999988766666554333 8999999998753


Q ss_pred             hhcccCCCccEEEEcCC
Q 024665          206 KYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       206 ~~~~~~~~fD~V~~d~p  222 (264)
                            .+||+|++|+|
T Consensus       111 ------~~~D~v~~~~p  121 (207)
T 1wy7_A          111 ------SRVDIVIMNPP  121 (207)
T ss_dssp             ------CCCSEEEECCC
T ss_pred             ------CCCCEEEEcCC
Confidence                  48999999999

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.22  E-value=1.4e-10  Score=98.16  Aligned_cols=81  Identities=17%  Similarity=0.187  Sum_probs=64.7

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      .++.+|||+|||+|.+++.+|... +...|+|||+|+.+++.+.+.+...  .||+++++|+.++..+ ...+.||.|++
T Consensus        37 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~-~~~~~~d~v~~  114 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDV-FEPGEVKRVYL  114 (213)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHH-CCTTSCCEEEE
T ss_pred             CCCceEEEEecCCCHHHHHHHHHC-CCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhh-cCcCCcCEEEE
Confidence            467899999999999999999885 5779999999998876666555432  4899999999885432 23468999999


Q ss_pred             cCCCc
Q 024665          220 DVAQP  224 (264)
Q Consensus       220 d~p~~  224 (264)
                      +.|.|
T Consensus       115 ~~~~p  119 (213)
T 2fca_A          115 NFSDP  119 (213)
T ss_dssp             ESCCC
T ss_pred             ECCCC
Confidence            88765

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.21  E-value=1.2e-10  Score=100.37  Aligned_cols=89  Identities=12%  Similarity=0.138  Sum_probs=68.7

Q ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCch
Q 024665          126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPA  205 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~  205 (264)
                      ..+...++..+   .++++.+|||+|||+|.++..++...  ..+|+++|+|+.+++.+.+......++++++.|+.+.+
T Consensus        41 ~~~~~~~~~~~---~~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~  115 (266)
T 3ujc_A           41 LEATKKILSDI---ELNENSKVLDIGSGLGGGCMYINEKY--GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKE  115 (266)
T ss_dssp             HHHHHHHTTTC---CCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCC
T ss_pred             HHHHHHHHHhc---CCCCCCEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCC
Confidence            34445554443   48899999999999999999999986  45999999999886555544433368999999998864


Q ss_pred             hhcccCCCccEEEEcCC
Q 024665          206 KYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       206 ~~~~~~~~fD~V~~d~p  222 (264)
                         ...++||+|++...
T Consensus       116 ---~~~~~fD~v~~~~~  129 (266)
T 3ujc_A          116 ---FPENNFDLIYSRDA  129 (266)
T ss_dssp             ---CCTTCEEEEEEESC
T ss_pred             ---CCCCcEEEEeHHHH
Confidence               23578999998755

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.21  E-value=2.2e-10  Score=92.78  Aligned_cols=116  Identities=17%  Similarity=0.140  Sum_probs=81.1

Q ss_pred             chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCC
Q 024665          125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDAR  202 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~  202 (264)
                      ...+...++..+.   +.++.+|||+|||+|.++..++.   +..+|+++|+|+.+++.+.+.....  .++++++.|+.
T Consensus        20 ~~~~~~~~~~~~~---~~~~~~vLdiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~   93 (183)
T 2yxd_A           20 KEEIRAVSIGKLN---LNKDDVVVDVGCGSGGMTVEIAK---RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAE   93 (183)
T ss_dssp             CHHHHHHHHHHHC---CCTTCEEEEESCCCSHHHHHHHT---TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHH
T ss_pred             HHHHHHHHHHHcC---CCCCCEEEEeCCCCCHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCcc
Confidence            3455555655554   77889999999999999999997   4679999999998876655554433  48999999997


Q ss_pred             CchhhcccCCCccEEEEcCCCchHHHHHHHHHhCCC--------cHHHHHHHHHHhh
Q 024665          203 HPAKYRMLVGMVDVIFSDVAQPDQVCFLCLILFQPI--------VINNLQSVNNETK  251 (264)
Q Consensus       203 ~~~~~~~~~~~fD~V~~d~p~~~~~~~~~~~~l~~~--------~~~~l~~~~~~Lk  251 (264)
                      +..    ..++||+|+++.+.........+..+ |.        ....+.+..+.|+
T Consensus        94 ~~~----~~~~~D~i~~~~~~~~~~~l~~~~~~-~gG~l~~~~~~~~~~~~~~~~l~  145 (183)
T 2yxd_A           94 DVL----DKLEFNKAFIGGTKNIEKIIEILDKK-KINHIVANTIVLENAAKIINEFE  145 (183)
T ss_dssp             HHG----GGCCCSEEEECSCSCHHHHHHHHHHT-TCCEEEEEESCHHHHHHHHHHHH
T ss_pred             ccc----cCCCCcEEEECCcccHHHHHHHHhhC-CCCEEEEEecccccHHHHHHHHH
Confidence            732    23689999999882222333333333 55        3445566666666

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.21  E-value=6.8e-11  Score=100.78  Aligned_cols=83  Identities=12%  Similarity=0.107  Sum_probs=65.4

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIF  218 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~  218 (264)
                      ..++.+|||+|||+|.+++.+|... +...|+|||+|+.+++.+.+.+...  .||.++++|+.++.......++||.|+
T Consensus        32 ~~~~~~vLDiGcG~G~~~~~lA~~~-p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~  110 (218)
T 3dxy_A           32 GREAPVTLEIGFGMGASLVAMAKDR-PEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQ  110 (218)
T ss_dssp             SSCCCEEEEESCTTCHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEE
T ss_pred             CCCCCeEEEEeeeChHHHHHHHHHC-CCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEE
Confidence            3467899999999999999999874 5779999999998877766665433  489999999988532112356899999


Q ss_pred             EcCCCc
Q 024665          219 SDVAQP  224 (264)
Q Consensus       219 ~d~p~~  224 (264)
                      ++.|.|
T Consensus       111 ~~~~~p  116 (218)
T 3dxy_A          111 LFFPDP  116 (218)
T ss_dssp             EESCCC
T ss_pred             EeCCCC
Confidence            986644

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.21  E-value=2e-10  Score=97.53  Aligned_cols=91  Identities=15%  Similarity=0.095  Sum_probs=71.1

Q ss_pred             chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCc
Q 024665          125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHP  204 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~  204 (264)
                      ...+...++..+.  ...++.+|||+|||+|.++..+++.. +..+|+++|+|+.+++.+.+......++++++.|+.++
T Consensus        28 ~~~~~~~~~~~~~--~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~  104 (234)
T 3dtn_A           28 FDDFYGVSVSIAS--VDTENPDILDLGAGTGLLSAFLMEKY-PEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKY  104 (234)
T ss_dssp             HHHHHHHHHHTCC--CSCSSCEEEEETCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTC
T ss_pred             HHHHHHHHHHHhh--cCCCCCeEEEecCCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhcc
Confidence            3444455554444  35678999999999999999999985 56799999999988766666655445899999999886


Q ss_pred             hhhcccCCCccEEEEcCC
Q 024665          205 AKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       205 ~~~~~~~~~fD~V~~d~p  222 (264)
                      +.    .++||+|++..+
T Consensus       105 ~~----~~~fD~v~~~~~  118 (234)
T 3dtn_A          105 DF----EEKYDMVVSALS  118 (234)
T ss_dssp             CC----CSCEEEEEEESC
T ss_pred             CC----CCCceEEEEeCc
Confidence            52    278999999866

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.20  E-value=1.2e-10  Score=103.85  Aligned_cols=88  Identities=13%  Similarity=0.127  Sum_probs=71.1

Q ss_pred             HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchh
Q 024665          127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK  206 (264)
Q Consensus       127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~  206 (264)
                      .++..|+..++   +.++++|||+|||+|.+|..|++.   ..+|++||+++++++.+.+......|++++++|+.+...
T Consensus        37 ~i~~~Iv~~l~---~~~~~~VLEIG~G~G~lT~~La~~---~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~  110 (295)
T 3gru_A           37 NFVNKAVESAN---LTKDDVVLEIGLGKGILTEELAKN---AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDL  110 (295)
T ss_dssp             HHHHHHHHHTT---CCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCG
T ss_pred             HHHHHHHHhcC---CCCcCEEEEECCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCc
Confidence            45666665554   889999999999999999999998   358999999998877766655545699999999988642


Q ss_pred             hcccCCCccEEEEcCCC
Q 024665          207 YRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       207 ~~~~~~~fD~V~~d~p~  223 (264)
                         ....||+|++|+|.
T Consensus       111 ---~~~~fD~Iv~NlPy  124 (295)
T 3gru_A          111 ---NKLDFNKVVANLPY  124 (295)
T ss_dssp             ---GGSCCSEEEEECCG
T ss_pred             ---ccCCccEEEEeCcc
Confidence               22479999999994

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.20  E-value=8.7e-11  Score=97.99  Aligned_cols=107  Identities=12%  Similarity=0.166  Sum_probs=75.2

Q ss_pred             CcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEc
Q 024665          123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIE  199 (264)
Q Consensus       123 p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~  199 (264)
                      |....++..++..+.   ++++ +|||+|||+|.++..+++.  +..+|+++|+|+.+++.+.+....   ..++++++.
T Consensus        27 ~~~~~~~~~~~~~~~---~~~~-~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~  100 (219)
T 3dlc_A           27 PIYPIIAENIINRFG---ITAG-TCIDIGSGPGALSIALAKQ--SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQG  100 (219)
T ss_dssp             THHHHHHHHHHHHHC---CCEE-EEEEETCTTSHHHHHHHHH--SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC
T ss_pred             cccHHHHHHHHHhcC---CCCC-EEEEECCCCCHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEc
Confidence            333445555554443   6666 9999999999999999998  567999999999887665555433   348999999


Q ss_pred             CCCCchhhcccCCCccEEEEcCC-----CchHHHHHHHHHhCCC
Q 024665          200 DARHPAKYRMLVGMVDVIFSDVA-----QPDQVCFLCLILFQPI  238 (264)
Q Consensus       200 D~~~~~~~~~~~~~fD~V~~d~p-----~~~~~~~~~~~~l~~~  238 (264)
                      |+.+.+   ...++||+|+++..     .+..........++|.
T Consensus       101 d~~~~~---~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg  141 (219)
T 3dlc_A          101 DVHNIP---IEDNYADLIVSRGSVFFWEDVATAFREIYRILKSG  141 (219)
T ss_dssp             BTTBCS---SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE
T ss_pred             CHHHCC---CCcccccEEEECchHhhccCHHHHHHHHHHhCCCC
Confidence            998854   23468999999865     2333344444444444

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.20  E-value=5.5e-11  Score=101.80  Aligned_cols=81  Identities=19%  Similarity=0.136  Sum_probs=64.2

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchh-hcccCCCccE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAK-YRMLVGMVDV  216 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~-~~~~~~~fD~  216 (264)
                      +.++.+|||+|||+|.+++.+|.. .+.++|+++|+++.+++.+.+....   ..||+++++|+.+..+ .  +.++||+
T Consensus        69 ~~~~~~vLDiG~G~G~~~~~la~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~~~fD~  145 (232)
T 3ntv_A           69 MNNVKNILEIGTAIGYSSMQFASI-SDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENV--NDKVYDM  145 (232)
T ss_dssp             HHTCCEEEEECCSSSHHHHHHHTT-CTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHH--TTSCEEE
T ss_pred             hcCCCEEEEEeCchhHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhh--ccCCccE
Confidence            567889999999999999999984 4578999999998886655554433   2489999999987643 2  2578999


Q ss_pred             EEEcCCCc
Q 024665          217 IFSDVAQP  224 (264)
Q Consensus       217 V~~d~p~~  224 (264)
                      |++|.+.+
T Consensus       146 V~~~~~~~  153 (232)
T 3ntv_A          146 IFIDAAKA  153 (232)
T ss_dssp             EEEETTSS
T ss_pred             EEEcCcHH
Confidence            99998643

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.20  E-value=2.6e-11  Score=101.21  Aligned_cols=77  Identities=16%  Similarity=0.113  Sum_probs=61.9

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIF  218 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~  218 (264)
                      ++++.+|||+|||+|.++..+++.  +..+|+++|+|+.+++.+.+.....  .++++++.|+.+..     .++||+|+
T Consensus        58 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~~~fD~i~  130 (205)
T 3grz_A           58 MVKPLTVADVGTGSGILAIAAHKL--GAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV-----DGKFDLIV  130 (205)
T ss_dssp             CSSCCEEEEETCTTSHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC-----CSCEEEEE
T ss_pred             ccCCCEEEEECCCCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC-----CCCceEEE
Confidence            568899999999999999999875  5669999999998876655554432  25999999997743     37899999


Q ss_pred             EcCCCc
Q 024665          219 SDVAQP  224 (264)
Q Consensus       219 ~d~p~~  224 (264)
                      ++.+..
T Consensus       131 ~~~~~~  136 (205)
T 3grz_A          131 ANILAE  136 (205)
T ss_dssp             EESCHH
T ss_pred             ECCcHH
Confidence            998743

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.19  E-value=1e-10  Score=98.22  Aligned_cols=80  Identities=25%  Similarity=0.329  Sum_probs=65.1

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      .+.++.+|||+|||+|.++..+++...+..+|+++|+|+.+++.+.+.....  .|+++++.|+.+.+   ...++||+|
T Consensus        34 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD~v  110 (219)
T 3dh0_A           34 GLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIP---LPDNTVDFI  110 (219)
T ss_dssp             TCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCS---SCSSCEEEE
T ss_pred             CCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCC---CCCCCeeEE
Confidence            3788999999999999999999999867789999999998866655544322  38999999998754   234689999


Q ss_pred             EEcCC
Q 024665          218 FSDVA  222 (264)
Q Consensus       218 ~~d~p  222 (264)
                      +++..
T Consensus       111 ~~~~~  115 (219)
T 3dh0_A          111 FMAFT  115 (219)
T ss_dssp             EEESC
T ss_pred             Eeehh
Confidence            98755

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.19  E-value=1.9e-10  Score=98.83  Aligned_cols=95  Identities=16%  Similarity=0.166  Sum_probs=73.0

Q ss_pred             eCCcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEE
Q 024665          121 WNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPI  197 (264)
Q Consensus       121 ~~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i  197 (264)
                      +.|........++..+.  .++++.+|||+|||+|.++..+++...  ++|+++|+|+.+++.+.+.+...   .+++++
T Consensus        26 ~~~~~~~~~~~~l~~l~--~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~  101 (257)
T 3f4k_A           26 QGPGSPEATRKAVSFIN--ELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANCADRVKGI  101 (257)
T ss_dssp             SSSCCHHHHHHHHTTSC--CCCTTCEEEEETCTTSHHHHHHHHHCC--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred             cCCCCHHHHHHHHHHHh--cCCCCCeEEEeCCCCCHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHcCCCCceEEE
Confidence            34555666777776654  478899999999999999999999853  49999999998876655554432   359999


Q ss_pred             EcCCCCchhhcccCCCccEEEEcCC
Q 024665          198 IEDARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       198 ~~D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      +.|+.+++   ...++||+|+++..
T Consensus       102 ~~d~~~~~---~~~~~fD~v~~~~~  123 (257)
T 3f4k_A          102 TGSMDNLP---FQNEELDLIWSEGA  123 (257)
T ss_dssp             ECCTTSCS---SCTTCEEEEEEESC
T ss_pred             ECChhhCC---CCCCCEEEEEecCh
Confidence            99998764   23478999998765

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.19  E-value=1.7e-10  Score=99.58  Aligned_cols=84  Identities=12%  Similarity=0.139  Sum_probs=64.7

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc----------CCCeEEEEcCCCCchhhccc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK----------RTNVIPIIEDARHPAKYRML  210 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~----------~~nV~~i~~D~~~~~~~~~~  210 (264)
                      ++++.+|||+|||+|.+++.+|... +...|++||+|+.+++.+.+.+..          ..|++++++|+.+..+....
T Consensus        47 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~  125 (246)
T 2vdv_E           47 MTKKVTIADIGCGFGGLMIDLSPAF-PEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFE  125 (246)
T ss_dssp             BSCCEEEEEETCTTSHHHHHHHHHS-TTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSC
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhC-CCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcc
Confidence            5678899999999999999999885 567999999998886555443321          25899999999874321123


Q ss_pred             CCCccEEEEcCCCch
Q 024665          211 VGMVDVIFSDVAQPD  225 (264)
Q Consensus       211 ~~~fD~V~~d~p~~~  225 (264)
                      ...+|.|+++.|.|+
T Consensus       126 ~~~~d~v~~~~p~p~  140 (246)
T 2vdv_E          126 KGQLSKMFFCFPDPH  140 (246)
T ss_dssp             TTCEEEEEEESCCCC
T ss_pred             ccccCEEEEECCCcc
Confidence            468999998888765

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.19  E-value=4.4e-11  Score=100.48  Aligned_cols=78  Identities=18%  Similarity=0.121  Sum_probs=62.8

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc--------------CCCeEEEEcCCCCch
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--------------RTNVIPIIEDARHPA  205 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~--------------~~nV~~i~~D~~~~~  205 (264)
                      .+.++.+|||+|||+|..+..||+.   ..+|+|||+|+.|++.+.+.+..              ..+|+++++|+.+++
T Consensus        19 ~~~~~~~vLD~GCG~G~~~~~la~~---g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~   95 (203)
T 1pjz_A           19 NVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALT   95 (203)
T ss_dssp             CCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSST
T ss_pred             ccCCCCEEEEeCCCCcHhHHHHHHC---CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCC
Confidence            4778999999999999999999987   24899999999998777666542              358999999999875


Q ss_pred             hhcccCCCccEEEEcCC
Q 024665          206 KYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       206 ~~~~~~~~fD~V~~d~p  222 (264)
                      ..  ..++||+|++...
T Consensus        96 ~~--~~~~fD~v~~~~~  110 (203)
T 1pjz_A           96 AR--DIGHCAAFYDRAA  110 (203)
T ss_dssp             HH--HHHSEEEEEEESC
T ss_pred             cc--cCCCEEEEEECcc
Confidence            31  1158999997654

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.17  E-value=1.9e-10  Score=101.68  Aligned_cols=82  Identities=12%  Similarity=0.053  Sum_probs=65.1

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc----CCCeEEEEcCCCCchhhc---ccCCC
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK----RTNVIPIIEDARHPAKYR---MLVGM  213 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~----~~nV~~i~~D~~~~~~~~---~~~~~  213 (264)
                      ..++.+|||+|||+|.++..+++.+.+..+|+++|+|+.+++.+.+.+..    ..++++++.|+.+++...   ...++
T Consensus        34 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  113 (299)
T 3g5t_A           34 DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQK  113 (299)
T ss_dssp             CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSC
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCC
Confidence            46889999999999999999998765678999999999887666665544    359999999999865210   01268


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      ||+|++...
T Consensus       114 fD~V~~~~~  122 (299)
T 3g5t_A          114 IDMITAVEC  122 (299)
T ss_dssp             EEEEEEESC
T ss_pred             eeEEeHhhH
Confidence            999999765

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.17  E-value=4.9e-11  Score=100.10  Aligned_cols=92  Identities=12%  Similarity=0.039  Sum_probs=67.2

Q ss_pred             chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCC
Q 024665          125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDAR  202 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~  202 (264)
                      ...+...++..+..  ..++.+|||+|||+|.+++.++..  ...+|+++|+|+.+++.+.+++...  .+++++++|+.
T Consensus        38 ~~~~~~~l~~~l~~--~~~~~~vLDlgcG~G~~~~~l~~~--~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~  113 (202)
T 2fpo_A           38 TDRVRETLFNWLAP--VIVDAQCLDCFAGSGALGLEALSR--YAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAM  113 (202)
T ss_dssp             CHHHHHHHHHHHHH--HHTTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHH
T ss_pred             HHHHHHHHHHHHHh--hcCCCeEEEeCCCcCHHHHHHHhc--CCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHH
Confidence            44555555544431  126789999999999999988765  2358999999998876665555433  48999999987


Q ss_pred             CchhhcccCCCccEEEEcCC
Q 024665          203 HPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       203 ~~~~~~~~~~~fD~V~~d~p  222 (264)
                      +..+.  ..++||+|++|+|
T Consensus       114 ~~~~~--~~~~fD~V~~~~p  131 (202)
T 2fpo_A          114 SFLAQ--KGTPHNIVFVDPP  131 (202)
T ss_dssp             HHHSS--CCCCEEEEEECCS
T ss_pred             HHHhh--cCCCCCEEEECCC
Confidence            74321  3458999999988

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.17  E-value=5.8e-11  Score=101.42  Aligned_cols=82  Identities=9%  Similarity=0.086  Sum_probs=64.4

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh---cC-CCeEEEEcCCCCchhhcccCCCccE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK---KR-TNVIPIIEDARHPAKYRMLVGMVDV  216 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~---~~-~nV~~i~~D~~~~~~~~~~~~~fD~  216 (264)
                      .+++.+|||+|||+|..++.+|+.+.+.++|+++|+++.+++.+.+...   .. .+|+++++|+.+..+. ...++||+
T Consensus        54 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~-~~~~~fD~  132 (221)
T 3dr5_A           54 GNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSR-LANDSYQL  132 (221)
T ss_dssp             CTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGG-SCTTCEEE
T ss_pred             CCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHH-hcCCCcCe
Confidence            4556699999999999999999988778899999999887655544433   33 4799999999875432 12478999


Q ss_pred             EEEcCCC
Q 024665          217 IFSDVAQ  223 (264)
Q Consensus       217 V~~d~p~  223 (264)
                      ||+|.+.
T Consensus       133 V~~d~~~  139 (221)
T 3dr5_A          133 VFGQVSP  139 (221)
T ss_dssp             EEECCCT
T ss_pred             EEEcCcH
Confidence            9999774

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.17  E-value=1.6e-10  Score=99.57  Aligned_cols=84  Identities=12%  Similarity=0.199  Sum_probs=62.0

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh--------cCCCeEEEEcCCCCchhhcccCC
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK--------KRTNVIPIIEDARHPAKYRMLVG  212 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~--------~~~nV~~i~~D~~~~~~~~~~~~  212 (264)
                      +.+..+|||||||+|.+++.||... +...|+|||+|+.+++.+.+.+.        ...||.++++|+.+..+.....+
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~  122 (235)
T 3ckk_A           44 AQAQVEFADIGCGYGGLLVELSPLF-PDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKG  122 (235)
T ss_dssp             --CCEEEEEETCTTCHHHHHHGGGS-TTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTT
T ss_pred             cCCCCeEEEEccCCcHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCc
Confidence            5677899999999999999999874 56799999999988655444322        13489999999987322112356


Q ss_pred             CccEEEEcCCCch
Q 024665          213 MVDVIFSDVAQPD  225 (264)
Q Consensus       213 ~fD~V~~d~p~~~  225 (264)
                      +||.|+++.|.|+
T Consensus       123 ~~D~v~~~~~dp~  135 (235)
T 3ckk_A          123 QLTKMFFLFPDPH  135 (235)
T ss_dssp             CEEEEEEESCC--
T ss_pred             CeeEEEEeCCCch
Confidence            8999999988776

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.16  E-value=8.2e-11  Score=101.88  Aligned_cols=98  Identities=15%  Similarity=0.152  Sum_probs=72.3

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh---cCCCeEEEEcCCCCchhhcccCCCccEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK---KRTNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~---~~~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      +.++.+|||+|||+|.+++.+|+.+.+.++|+++|+++.+++.+.+...   ...+|+++++|+.+..+.....++||+|
T Consensus        61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V  140 (248)
T 3tfw_A           61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI  140 (248)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred             hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence            5678899999999999999999987657899999999887655554443   2348999999998754321112489999


Q ss_pred             EEcCCCch--HHHHHHHHHhCCC
Q 024665          218 FSDVAQPD--QVCFLCLILFQPI  238 (264)
Q Consensus       218 ~~d~p~~~--~~~~~~~~~l~~~  238 (264)
                      ++|.+.+.  .........++|+
T Consensus       141 ~~d~~~~~~~~~l~~~~~~LkpG  163 (248)
T 3tfw_A          141 FIDADKPNNPHYLRWALRYSRPG  163 (248)
T ss_dssp             EECSCGGGHHHHHHHHHHTCCTT
T ss_pred             EECCchHHHHHHHHHHHHhcCCC
Confidence            99988443  3334445566666

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.16  E-value=3e-11  Score=103.99  Aligned_cols=79  Identities=24%  Similarity=0.230  Sum_probs=63.2

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC-CeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT-NVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~-nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      ..++.+|||||||+|..+..+++..  ..+|++||+|+.+++.+.+.+.... +++++++|+.+.... ...++||.|++
T Consensus        58 ~~~G~rVLdiG~G~G~~~~~~~~~~--~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~FD~i~~  134 (236)
T 3orh_A           58 SSKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPT-LPDGHFDGILY  134 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHTTSC--EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGG-SCTTCEEEEEE
T ss_pred             ccCCCeEEEECCCccHHHHHHHHhC--CcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhccc-ccccCCceEEE
Confidence            5689999999999999999998762  3489999999999877777665543 799999998765421 34568999999


Q ss_pred             cCC
Q 024665          220 DVA  222 (264)
Q Consensus       220 d~p  222 (264)
                      |+.
T Consensus       135 D~~  137 (236)
T 3orh_A          135 DTY  137 (236)
T ss_dssp             CCC
T ss_pred             eee
Confidence            876

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.16  E-value=1.7e-10  Score=101.43  Aligned_cols=108  Identities=8%  Similarity=0.012  Sum_probs=78.4

Q ss_pred             chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC-CeEEEEcCCCC
Q 024665          125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT-NVIPIIEDARH  203 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~-nV~~i~~D~~~  203 (264)
                      .......++..+.  .+.++.+|||+|||+|.++..+++.+.+..+|+++|+|+.+++.+.+...... |+++++.|+.+
T Consensus         6 ~~~~~~~~~~~~~--~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~   83 (284)
T 3gu3_A            6 NDDYVSFLVNTVW--KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATE   83 (284)
T ss_dssp             CHHHHHHHHHTTS--CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTT
T ss_pred             chHHHHHHHHHHh--ccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhh
Confidence            3445555554443  46788999999999999999999886545799999999988766666554433 89999999998


Q ss_pred             chhhcccCCCccEEEEcCC-----CchHHHHHHHHHhCCC
Q 024665          204 PAKYRMLVGMVDVIFSDVA-----QPDQVCFLCLILFQPI  238 (264)
Q Consensus       204 ~~~~~~~~~~fD~V~~d~p-----~~~~~~~~~~~~l~~~  238 (264)
                      .+    ..++||+|+++..     .+..........++|+
T Consensus        84 ~~----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg  119 (284)
T 3gu3_A           84 IE----LNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKG  119 (284)
T ss_dssp             CC----CSSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEE
T ss_pred             cC----cCCCeeEEEECChhhcCCCHHHHHHHHHHHcCCC
Confidence            54    2468999999765     3334444444555554

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.16  E-value=5.5e-10  Score=90.44  Aligned_cols=95  Identities=16%  Similarity=0.111  Sum_probs=70.2

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCCCchhhcccCCCccE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV  216 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~~~~~~~~~~~~fD~  216 (264)
                      .++++++|||+|||+|.++..++... +..+|+++|+|+.+++.+.+.....   .++ +++.|+.+..+  ...++||+
T Consensus        22 ~~~~~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~--~~~~~~D~   97 (178)
T 3hm2_A           22 APKPHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFD--DVPDNPDV   97 (178)
T ss_dssp             CCCTTEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGG--GCCSCCSE
T ss_pred             cccCCCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhh--ccCCCCCE
Confidence            37899999999999999999999875 5679999999998876655544332   278 89999866332  22368999


Q ss_pred             EEEcCCCch-HHHHHHHHHhCCC
Q 024665          217 IFSDVAQPD-QVCFLCLILFQPI  238 (264)
Q Consensus       217 V~~d~p~~~-~~~~~~~~~l~~~  238 (264)
                      |+++.+... .........++|.
T Consensus        98 i~~~~~~~~~~~l~~~~~~L~~g  120 (178)
T 3hm2_A           98 IFIGGGLTAPGVFAAAWKRLPVG  120 (178)
T ss_dssp             EEECC-TTCTTHHHHHHHTCCTT
T ss_pred             EEECCcccHHHHHHHHHHhcCCC
Confidence            999887433 4455555667776

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.16  E-value=4.4e-11  Score=101.12  Aligned_cols=98  Identities=13%  Similarity=0.135  Sum_probs=70.1

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhccc---CCCc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRML---VGMV  214 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~---~~~f  214 (264)
                      +.++.+|||+|||+|.+++.+++.+.+.++|+++|+++.+++.+.+....   ..+|+++++|+.+..+....   .++|
T Consensus        62 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  141 (225)
T 3tr6_A           62 LMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQY  141 (225)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCE
T ss_pred             hhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCc
Confidence            45778999999999999999999876578999999998886555554432   23699999999765432111   1689


Q ss_pred             cEEEEcCCCc--hHHHHHHHHHhCCC
Q 024665          215 DVIFSDVAQP--DQVCFLCLILFQPI  238 (264)
Q Consensus       215 D~V~~d~p~~--~~~~~~~~~~l~~~  238 (264)
                      |+|++|.+..  ..........++|+
T Consensus       142 D~v~~~~~~~~~~~~l~~~~~~L~pg  167 (225)
T 3tr6_A          142 DLIYIDADKANTDLYYEESLKLLREG  167 (225)
T ss_dssp             EEEEECSCGGGHHHHHHHHHHHEEEE
T ss_pred             cEEEECCCHHHHHHHHHHHHHhcCCC
Confidence            9999998743  23333444455554

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.16  E-value=8.2e-11  Score=96.16  Aligned_cols=96  Identities=13%  Similarity=0.033  Sum_probs=70.1

Q ss_pred             CcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEc
Q 024665          123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIE  199 (264)
Q Consensus       123 p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~  199 (264)
                      |....+...++..+.  .+.++.+|||+|||+|.+++.++..  +..+|+++|+|+.+++.+.+.+..   ..++++++.
T Consensus        26 p~~~~~~~~~~~~l~--~~~~~~~vLD~GcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~  101 (187)
T 2fhp_A           26 PTTDKVKESIFNMIG--PYFDGGMALDLYSGSGGLAIEAVSR--GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKM  101 (187)
T ss_dssp             CCCHHHHHHHHHHHC--SCCSSCEEEETTCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEES
T ss_pred             cCHHHHHHHHHHHHH--hhcCCCCEEEeCCccCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEEC
Confidence            334556666665554  2467889999999999999998874  456999999999886655544432   247999999


Q ss_pred             CCCCchh-hcccCCCccEEEEcCC
Q 024665          200 DARHPAK-YRMLVGMVDVIFSDVA  222 (264)
Q Consensus       200 D~~~~~~-~~~~~~~fD~V~~d~p  222 (264)
                      |+.+... .....++||+|++|+|
T Consensus       102 d~~~~~~~~~~~~~~fD~i~~~~~  125 (187)
T 2fhp_A          102 DANRALEQFYEEKLQFDLVLLDPP  125 (187)
T ss_dssp             CHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             cHHHHHHHHHhcCCCCCEEEECCC
Confidence            9987432 1112468999999988

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.16  E-value=2.7e-10  Score=96.39  Aligned_cols=81  Identities=25%  Similarity=0.298  Sum_probs=65.4

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc-------CCCeEEEEcCCCCchhhcccCC
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-------RTNVIPIIEDARHPAKYRMLVG  212 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~-------~~nV~~i~~D~~~~~~~~~~~~  212 (264)
                      .++++.+|||+|||+|.++.++++.+++.++|+++|+++.+++.+.+....       ..|+++++.|+.+...   ...
T Consensus        74 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~  150 (226)
T 1i1n_A           74 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA---EEA  150 (226)
T ss_dssp             TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG---GGC
T ss_pred             hCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcc---cCC
Confidence            377899999999999999999999987778999999998887665554432       3489999999876432   236


Q ss_pred             CccEEEEcCCC
Q 024665          213 MVDVIFSDVAQ  223 (264)
Q Consensus       213 ~fD~V~~d~p~  223 (264)
                      +||+|+++.+.
T Consensus       151 ~fD~i~~~~~~  161 (226)
T 1i1n_A          151 PYDAIHVGAAA  161 (226)
T ss_dssp             CEEEEEECSBB
T ss_pred             CcCEEEECCch
Confidence            89999998774

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.16  E-value=4.2e-10  Score=105.37  Aligned_cols=105  Identities=21%  Similarity=0.150  Sum_probs=75.5

Q ss_pred             HHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCch
Q 024665          128 LAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPA  205 (264)
Q Consensus       128 l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~  205 (264)
                      +...++..+.   +.++++|||+|||+|.+++.||..   ..+|+++|+|+.+++.+.+++..+  .|++++++|+.+..
T Consensus       274 l~~~~~~~l~---~~~~~~VLDlgcG~G~~~~~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l  347 (433)
T 1uwv_A          274 MVARALEWLD---VQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDV  347 (433)
T ss_dssp             HHHHHHHHHT---CCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCC
T ss_pred             HHHHHHHhhc---CCCCCEEEECCCCCCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHh
Confidence            4444444333   678899999999999999999987   459999999998877766655433  38999999998743


Q ss_pred             h-hcccCCCccEEEEcCCCc-hHHHHHHHHHhCCC
Q 024665          206 K-YRMLVGMVDVIFSDVAQP-DQVCFLCLILFQPI  238 (264)
Q Consensus       206 ~-~~~~~~~fD~V~~d~p~~-~~~~~~~~~~l~~~  238 (264)
                      . .....++||+|++|+|.. .......+..+.|.
T Consensus       348 ~~~~~~~~~fD~Vv~dPPr~g~~~~~~~l~~~~p~  382 (433)
T 1uwv_A          348 TKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPI  382 (433)
T ss_dssp             SSSGGGTTCCSEEEECCCTTCCHHHHHHHHHHCCS
T ss_pred             hhhhhhcCCCCEEEECCCCccHHHHHHHHHhcCCC
Confidence            2 112235899999999942 22344455556666

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.16  E-value=1.2e-10  Score=100.76  Aligned_cols=92  Identities=13%  Similarity=0.131  Sum_probs=68.5

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIF  218 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~  218 (264)
                      ++++.+|||+|||+|.++..+++..   .+|+++|+|+.+++.+.+.+...  .|+.++++|+.+++   ...++||+|+
T Consensus        35 ~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~---~~~~~fD~V~  108 (260)
T 1vl5_A           35 LKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP---FTDERFHIVT  108 (260)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCC---SCTTCEEEEE
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCC---CCCCCEEEEE
Confidence            7789999999999999999999874   39999999998876655554332  48999999998754   2346899999


Q ss_pred             EcCC-----CchHHHHHHHHHhCCC
Q 024665          219 SDVA-----QPDQVCFLCLILFQPI  238 (264)
Q Consensus       219 ~d~p-----~~~~~~~~~~~~l~~~  238 (264)
                      +...     .+..........++|+
T Consensus       109 ~~~~l~~~~d~~~~l~~~~r~Lkpg  133 (260)
T 1vl5_A          109 CRIAAHHFPNPASFVSEAYRVLKKG  133 (260)
T ss_dssp             EESCGGGCSCHHHHHHHHHHHEEEE
T ss_pred             EhhhhHhcCCHHHHHHHHHHHcCCC
Confidence            9855     3334444455555554

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.15  E-value=1.2e-10  Score=96.83  Aligned_cols=72  Identities=14%  Similarity=0.066  Sum_probs=59.8

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      ...++.+|||+|||+|.++..++..  +..+|+++|+|+.+++.+.+...   +++++++|+.+++      ++||+|++
T Consensus        48 ~~~~~~~vlD~gcG~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~---~~~~~~~d~~~~~------~~~D~v~~  116 (200)
T 1ne2_A           48 GNIGGRSVIDAGTGNGILACGSYLL--GAESVTAFDIDPDAIETAKRNCG---GVNFMVADVSEIS------GKYDTWIM  116 (200)
T ss_dssp             TSSBTSEEEEETCTTCHHHHHHHHT--TBSEEEEEESCHHHHHHHHHHCT---TSEEEECCGGGCC------CCEEEEEE
T ss_pred             CCCCCCEEEEEeCCccHHHHHHHHc--CCCEEEEEECCHHHHHHHHHhcC---CCEEEECcHHHCC------CCeeEEEE
Confidence            3567889999999999999999986  45589999999988655544433   8999999998742      68999999


Q ss_pred             cCC
Q 024665          220 DVA  222 (264)
Q Consensus       220 d~p  222 (264)
                      |+|
T Consensus       117 ~~p  119 (200)
T 1ne2_A          117 NPP  119 (200)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            998

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.15  E-value=2.4e-11  Score=105.13  Aligned_cols=83  Identities=18%  Similarity=0.176  Sum_probs=63.8

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHH---HHHHHHhhcCCCeEEEEcCCCCchhhcc---cCCCc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSG---RDLVNMAKKRTNVIPIIEDARHPAKYRM---LVGMV  214 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~---~~l~~~a~~~~nV~~i~~D~~~~~~~~~---~~~~f  214 (264)
                      +.+..+|||+|||+|..++.+|+.+.+.++|+++|+++.++   ++.++.+....+|+++++|+.+..+...   ..++|
T Consensus        58 ~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~f  137 (242)
T 3r3h_A           58 LTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQF  137 (242)
T ss_dssp             HHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCE
T ss_pred             hcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCE
Confidence            45678999999999999999999886678999999997653   3444444444589999999987543200   04789


Q ss_pred             cEEEEcCCC
Q 024665          215 DVIFSDVAQ  223 (264)
Q Consensus       215 D~V~~d~p~  223 (264)
                      |+|++|.+.
T Consensus       138 D~V~~d~~~  146 (242)
T 3r3h_A          138 DFIFIDADK  146 (242)
T ss_dssp             EEEEEESCG
T ss_pred             eEEEEcCCh
Confidence            999999873

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.15  E-value=1.2e-10  Score=101.23  Aligned_cols=104  Identities=15%  Similarity=0.159  Sum_probs=71.0

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC-CeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT-NVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~-nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      ++++.+|||+|||+|.+++.++.. + . +|+++|+|+.+++.+.+++..+. ++++++.|+.+..    ...+||+|++
T Consensus       118 ~~~~~~VLDiGcG~G~l~~~la~~-g-~-~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~----~~~~fD~Vv~  190 (254)
T 2nxc_A          118 LRPGDKVLDLGTGSGVLAIAAEKL-G-G-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAAL----PFGPFDLLVA  190 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHT-T-C-EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHG----GGCCEEEEEE
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHh-C-C-eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcC----cCCCCCEEEE
Confidence            578899999999999999998875 3 2 99999999887666555544332 3899999987632    2368999999


Q ss_pred             cCCCch--HHHHHHHHHhCCC--------cHHHHHHHHHHhh
Q 024665          220 DVAQPD--QVCFLCLILFQPI--------VINNLQSVNNETK  251 (264)
Q Consensus       220 d~p~~~--~~~~~~~~~l~~~--------~~~~l~~~~~~Lk  251 (264)
                      +++...  .........++|.        ...+...+.+.++
T Consensus       191 n~~~~~~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~  232 (254)
T 2nxc_A          191 NLYAELHAALAPRYREALVPGGRALLTGILKDRAPLVREAMA  232 (254)
T ss_dssp             ECCHHHHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHH
Confidence            986322  2223333445554        2334455555554

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.15  E-value=1.6e-10  Score=102.42  Aligned_cols=89  Identities=17%  Similarity=0.179  Sum_probs=68.6

Q ss_pred             chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCC
Q 024665          125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDA  201 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~  201 (264)
                      +..+...++..+.   ..++.+|||+|||+|.+++.++..  +..+|+++|+|+.+++.+.+++...   .+|++++.|+
T Consensus       108 te~lv~~~l~~~~---~~~~~~vLDlG~GsG~~~~~la~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~  182 (284)
T 1nv8_A          108 TEELVELALELIR---KYGIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEF  182 (284)
T ss_dssp             HHHHHHHHHHHHH---HHTCCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESST
T ss_pred             HHHHHHHHHHHhc---ccCCCEEEEEeCchhHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcc
Confidence            4556666665443   346789999999999999999988  6789999999998876655554432   2599999999


Q ss_pred             CCchhhcccCCCc---cEEEEcCCC
Q 024665          202 RHPAKYRMLVGMV---DVIFSDVAQ  223 (264)
Q Consensus       202 ~~~~~~~~~~~~f---D~V~~d~p~  223 (264)
                      .+...     ++|   |+|++|+|.
T Consensus       183 ~~~~~-----~~f~~~D~IvsnPPy  202 (284)
T 1nv8_A          183 LEPFK-----EKFASIEMILSNPPY  202 (284)
T ss_dssp             TGGGG-----GGTTTCCEEEECCCC
T ss_pred             hhhcc-----cccCCCCEEEEcCCC
Confidence            87432     467   999999994

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.15  E-value=1.8e-10  Score=106.01  Aligned_cols=82  Identities=26%  Similarity=0.263  Sum_probs=64.9

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc----------CCCeEEEEcCCCCchhh---
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK----------RTNVIPIIEDARHPAKY---  207 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~----------~~nV~~i~~D~~~~~~~---  207 (264)
                      +.++.+|||+|||+|.++..+++.+++..+|+++|+|+.+++.+.+....          ..||++++.|+.++...   
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~  160 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE  160 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence            66889999999999999999999987788999999999886554443321          15999999999886311   


Q ss_pred             cccCCCccEEEEcCC
Q 024665          208 RMLVGMVDVIFSDVA  222 (264)
Q Consensus       208 ~~~~~~fD~V~~d~p  222 (264)
                      ....++||+|+++..
T Consensus       161 ~~~~~~fD~V~~~~~  175 (383)
T 4fsd_A          161 GVPDSSVDIVISNCV  175 (383)
T ss_dssp             CCCTTCEEEEEEESC
T ss_pred             CCCCCCEEEEEEccc
Confidence            123568999999865

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.14  E-value=8.9e-11  Score=98.41  Aligned_cols=92  Identities=14%  Similarity=0.013  Sum_probs=65.6

Q ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC----CCeEEEEcCC
Q 024665          126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR----TNVIPIIEDA  201 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~----~nV~~i~~D~  201 (264)
                      ..+...++..+..  ..++.+|||+|||+|.+++.++..  ...+|+++|+|+.+++.+.+++...    .+++++++|+
T Consensus        38 ~~~~~~l~~~l~~--~~~~~~vLDlGcGtG~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~  113 (201)
T 2ift_A           38 DRVKETLFNWLMP--YIHQSECLDGFAGSGSLGFEALSR--QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSS  113 (201)
T ss_dssp             CHHHHHHHHHHHH--HHTTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCH
T ss_pred             HHHHHHHHHHHHH--hcCCCeEEEcCCccCHHHHHHHHc--cCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCH
Confidence            3444444444331  126789999999999999987765  2458999999998876655554332    4899999998


Q ss_pred             CCchhhcccCCC-ccEEEEcCC
Q 024665          202 RHPAKYRMLVGM-VDVIFSDVA  222 (264)
Q Consensus       202 ~~~~~~~~~~~~-fD~V~~d~p  222 (264)
                      .+.... ...++ ||+|++|+|
T Consensus       114 ~~~~~~-~~~~~~fD~I~~~~~  134 (201)
T 2ift_A          114 LDFLKQ-PQNQPHFDVVFLDPP  134 (201)
T ss_dssp             HHHTTS-CCSSCCEEEEEECCC
T ss_pred             HHHHHh-hccCCCCCEEEECCC
Confidence            775321 12357 999999998

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.14  E-value=2.8e-10  Score=98.81  Aligned_cols=85  Identities=22%  Similarity=0.191  Sum_probs=66.9

Q ss_pred             chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCc
Q 024665          125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHP  204 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~  204 (264)
                      ...+...++..+.   +.++.+|||+|||+|.++..+++   +..+|+++|+|+.+    ++.+..+.|+++++.|+.+.
T Consensus        19 ~~~~~~~l~~~~~---~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~----~~~a~~~~~~~~~~~d~~~~   88 (261)
T 3ege_A           19 DIRIVNAIINLLN---LPKGSVIADIGAGTGGYSVALAN---QGLFVYAVEPSIVM----RQQAVVHPQVEWFTGYAENL   88 (261)
T ss_dssp             CHHHHHHHHHHHC---CCTTCEEEEETCTTSHHHHHHHT---TTCEEEEECSCHHH----HHSSCCCTTEEEECCCTTSC
T ss_pred             cHHHHHHHHHHhC---CCCCCEEEEEcCcccHHHHHHHh---CCCEEEEEeCCHHH----HHHHHhccCCEEEECchhhC
Confidence            4456666655554   78899999999999999999997   45799999999965    45555555999999999875


Q ss_pred             hhhcccCCCccEEEEcCC
Q 024665          205 AKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       205 ~~~~~~~~~fD~V~~d~p  222 (264)
                      +   ...++||+|++...
T Consensus        89 ~---~~~~~fD~v~~~~~  103 (261)
T 3ege_A           89 A---LPDKSVDGVISILA  103 (261)
T ss_dssp             C---SCTTCBSEEEEESC
T ss_pred             C---CCCCCEeEEEEcch
Confidence            4   23478999998765

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.14  E-value=9.1e-11  Score=99.45  Aligned_cols=82  Identities=17%  Similarity=0.196  Sum_probs=63.8

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh---cCCCeEEEEcCCCCchhhcccC-----C
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK---KRTNVIPIIEDARHPAKYRMLV-----G  212 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~---~~~nV~~i~~D~~~~~~~~~~~-----~  212 (264)
                      +.+..+|||+|||+|.+++.+|+.+.+.++|++||+++.+++.+.+...   ...+|+++++|+.+..+.  +.     +
T Consensus        56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~--~~~~~~~~  133 (221)
T 3u81_A           56 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQ--LKKKYDVD  133 (221)
T ss_dssp             HHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGG--TTTTSCCC
T ss_pred             hcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHH--HHHhcCCC
Confidence            4577899999999999999999987667899999999888655544433   223699999998764321  22     5


Q ss_pred             CccEEEEcCCCc
Q 024665          213 MVDVIFSDVAQP  224 (264)
Q Consensus       213 ~fD~V~~d~p~~  224 (264)
                      +||+|++|....
T Consensus       134 ~fD~V~~d~~~~  145 (221)
T 3u81_A          134 TLDMVFLDHWKD  145 (221)
T ss_dssp             CCSEEEECSCGG
T ss_pred             ceEEEEEcCCcc
Confidence            899999998743

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.14  E-value=2e-10  Score=100.46  Aligned_cols=90  Identities=9%  Similarity=0.048  Sum_probs=69.5

Q ss_pred             HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchh
Q 024665          127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK  206 (264)
Q Consensus       127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~  206 (264)
                      .++..++..+.   +.++++|||+|||+|.+|..|++..   .+|+|||+|+++++.+.+......|++++++|+.+.+.
T Consensus        16 ~i~~~iv~~~~---~~~~~~VLEIG~G~G~lt~~La~~~---~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~   89 (255)
T 3tqs_A           16 FVLQKIVSAIH---PQKTDTLVEIGPGRGALTDYLLTEC---DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDF   89 (255)
T ss_dssp             HHHHHHHHHHC---CCTTCEEEEECCTTTTTHHHHTTTS---SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCG
T ss_pred             HHHHHHHHhcC---CCCcCEEEEEcccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCH
Confidence            45555555444   8899999999999999999999873   58999999999987776665545699999999998642


Q ss_pred             hccc-CCCccEEEEcCCC
Q 024665          207 YRML-VGMVDVIFSDVAQ  223 (264)
Q Consensus       207 ~~~~-~~~fD~V~~d~p~  223 (264)
                      .... ..+|| |++|+|.
T Consensus        90 ~~~~~~~~~~-vv~NlPY  106 (255)
T 3tqs_A           90 SSVKTDKPLR-VVGNLPY  106 (255)
T ss_dssp             GGSCCSSCEE-EEEECCH
T ss_pred             HHhccCCCeE-EEecCCc
Confidence            1111 24688 8899993

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.13  E-value=2e-10  Score=105.69  Aligned_cols=78  Identities=13%  Similarity=0.027  Sum_probs=62.5

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC-----CCeEEEEcCCCCchhhcccCCCcc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-----TNVIPIIEDARHPAKYRMLVGMVD  215 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~-----~nV~~i~~D~~~~~~~~~~~~~fD  215 (264)
                      ..++.+|||+|||+|.+++.++... |..+|++||+|+.+++.+.+++..+     .++++++.|+.+..    ..++||
T Consensus       220 ~~~~~~VLDlGcG~G~~s~~la~~~-p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~----~~~~fD  294 (375)
T 4dcm_A          220 ENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV----EPFRFN  294 (375)
T ss_dssp             CSCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTC----CTTCEE
T ss_pred             ccCCCeEEEEeCcchHHHHHHHHHC-CCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccC----CCCCee
Confidence            5667899999999999999999884 5679999999998865555544332     26899999998743    246899


Q ss_pred             EEEEcCCC
Q 024665          216 VIFSDVAQ  223 (264)
Q Consensus       216 ~V~~d~p~  223 (264)
                      +|++|+|.
T Consensus       295 ~Ii~nppf  302 (375)
T 4dcm_A          295 AVLCNPPF  302 (375)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCc
Confidence            99999984

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.13  E-value=1.9e-10  Score=95.33  Aligned_cols=73  Identities=16%  Similarity=0.167  Sum_probs=57.5

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCC-CCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchh-------------
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK-------------  206 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~-~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~-------------  206 (264)
                      ++++.+|||+|||+|.++..+++.+.+ .++|+|+|+|+.+         ...++++++.|+.+...             
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~---------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~   90 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD---------PIPNVYFIQGEIGKDNMNNIKNINYIDNMN   90 (201)
T ss_dssp             CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC---------CCTTCEEEECCTTTTSSCCC----------
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC---------CCCCceEEEccccchhhhhhcccccccccc
Confidence            678999999999999999999998753 6799999999721         13589999999987540             


Q ss_pred             ----h-----cccCCCccEEEEcCC
Q 024665          207 ----Y-----RMLVGMVDVIFSDVA  222 (264)
Q Consensus       207 ----~-----~~~~~~fD~V~~d~p  222 (264)
                          .     .....+||+|++|.+
T Consensus        91 ~~~~~~~~~~~~~~~~fD~v~~~~~  115 (201)
T 2plw_A           91 NNSVDYKLKEILQDKKIDIILSDAA  115 (201)
T ss_dssp             -CHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             chhhHHHHHhhcCCCcccEEEeCCC
Confidence                0     012358999999976

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.13  E-value=2.1e-10  Score=100.39  Aligned_cols=87  Identities=18%  Similarity=0.159  Sum_probs=65.4

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcC
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDV  221 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~  221 (264)
                      ....+|||||||+|.++..|++..   .+|+|||+|+.|    ++.+...+||+++++|+.+++   ...++||+|++..
T Consensus        38 ~~~~~vLDvGcGtG~~~~~l~~~~---~~v~gvD~s~~m----l~~a~~~~~v~~~~~~~e~~~---~~~~sfD~v~~~~  107 (257)
T 4hg2_A           38 PARGDALDCGCGSGQASLGLAEFF---ERVHAVDPGEAQ----IRQALRHPRVTYAVAPAEDTG---LPPASVDVAIAAQ  107 (257)
T ss_dssp             SCSSEEEEESCTTTTTHHHHHTTC---SEEEEEESCHHH----HHTCCCCTTEEEEECCTTCCC---CCSSCEEEEEECS
T ss_pred             CCCCCEEEEcCCCCHHHHHHHHhC---CEEEEEeCcHHh----hhhhhhcCCceeehhhhhhhc---ccCCcccEEEEee
Confidence            345799999999999999999873   489999999976    455666679999999998865   3457999999876


Q ss_pred             C----CchHHHHHHHHHhCCC
Q 024665          222 A----QPDQVCFLCLILFQPI  238 (264)
Q Consensus       222 p----~~~~~~~~~~~~l~~~  238 (264)
                      .    .++.........++|+
T Consensus       108 ~~h~~~~~~~~~e~~rvLkpg  128 (257)
T 4hg2_A          108 AMHWFDLDRFWAELRRVARPG  128 (257)
T ss_dssp             CCTTCCHHHHHHHHHHHEEEE
T ss_pred             ehhHhhHHHHHHHHHHHcCCC
Confidence            5    2333334444444444

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.12  E-value=2.7e-10  Score=99.03  Aligned_cols=97  Identities=13%  Similarity=0.011  Sum_probs=68.9

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIF  218 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~  218 (264)
                      +.++.+|||+|||+|..++.+|... +..+|++||+|+.+++.+.+.+...  .||+++++|+.++.......++||+|+
T Consensus        78 ~~~~~~vLDiG~G~G~~~i~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~  156 (249)
T 3g89_A           78 WQGPLRVLDLGTGAGFPGLPLKIVR-PELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAV  156 (249)
T ss_dssp             CCSSCEEEEETCTTTTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEE
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEE
Confidence            4678999999999999999999875 6789999999998866555544322  379999999987542111236899999


Q ss_pred             EcCCCch-HHHHHHHHHhCCC
Q 024665          219 SDVAQPD-QVCFLCLILFQPI  238 (264)
Q Consensus       219 ~d~p~~~-~~~~~~~~~l~~~  238 (264)
                      ++...+. .........++|+
T Consensus       157 s~a~~~~~~ll~~~~~~Lkpg  177 (249)
T 3g89_A          157 ARAVAPLCVLSELLLPFLEVG  177 (249)
T ss_dssp             EESSCCHHHHHHHHGGGEEEE
T ss_pred             ECCcCCHHHHHHHHHHHcCCC
Confidence            9865432 2223333344444

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.12  E-value=4.5e-10  Score=94.46  Aligned_cols=89  Identities=15%  Similarity=0.019  Sum_probs=66.2

Q ss_pred             HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC-------CCeEEEEc
Q 024665          127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-------TNVIPIIE  199 (264)
Q Consensus       127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~-------~nV~~i~~  199 (264)
                      .....++..+.   ..++.+|||+|||+|.++..+++.. +..+|+++|+|+.+++.+.+.....       .++++++.
T Consensus        16 ~~~~~l~~~l~---~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~   91 (217)
T 3jwh_A           16 QRMNGVVAALK---QSNARRVIDLGCGQGNLLKILLKDS-FFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQG   91 (217)
T ss_dssp             HHHHHHHHHHH---HTTCCEEEEETCTTCHHHHHHHHCT-TCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEEC
T ss_pred             HHHHHHHHHHH---hcCCCEEEEeCCCCCHHHHHHHhhC-CCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeC
Confidence            34444444443   5678899999999999999999863 4569999999998876666554322       27999999


Q ss_pred             CCCCchhhcccCCCccEEEEcCC
Q 024665          200 DARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       200 D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      |+.....   ..++||+|++...
T Consensus        92 d~~~~~~---~~~~fD~v~~~~~  111 (217)
T 3jwh_A           92 ALTYQDK---RFHGYDAATVIEV  111 (217)
T ss_dssp             CTTSCCG---GGCSCSEEEEESC
T ss_pred             Ccccccc---cCCCcCEEeeHHH
Confidence            9865442   3468999998765

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.11  E-value=6.5e-10  Score=99.10  Aligned_cols=93  Identities=14%  Similarity=0.029  Sum_probs=65.7

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc--CCCeEEEEcCCCCchhhcccCCCccEE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--RTNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~--~~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      .++++++|||+|||+|.++..++... +.++|++||+|+.+++.+.+.+..  ..||+++++|+.+++     ...||+|
T Consensus       119 ~l~~g~rVLDIGcG~G~~ta~~lA~~-~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~-----d~~FDvV  192 (298)
T 3fpf_A          119 RFRRGERAVFIGGGPLPLTGILLSHV-YGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID-----GLEFDVL  192 (298)
T ss_dssp             TCCTTCEEEEECCCSSCHHHHHHHHT-TCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG-----GCCCSEE
T ss_pred             CCCCcCEEEEECCCccHHHHHHHHHc-cCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC-----CCCcCEE
Confidence            58999999999999998775544332 467999999999886555554332  158999999998754     3789999


Q ss_pred             EEcCCCc--hHHHHHHHHHhCCC
Q 024665          218 FSDVAQP--DQVCFLCLILFQPI  238 (264)
Q Consensus       218 ~~d~p~~--~~~~~~~~~~l~~~  238 (264)
                      +++...+  ..........++|+
T Consensus       193 ~~~a~~~d~~~~l~el~r~LkPG  215 (298)
T 3fpf_A          193 MVAALAEPKRRVFRNIHRYVDTE  215 (298)
T ss_dssp             EECTTCSCHHHHHHHHHHHCCTT
T ss_pred             EECCCccCHHHHHHHHHHHcCCC
Confidence            9875422  23333344444444

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.11  E-value=3.4e-10  Score=95.24  Aligned_cols=90  Identities=12%  Similarity=0.001  Sum_probs=66.3

Q ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC-------CCeEEEE
Q 024665          126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-------TNVIPII  198 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~-------~nV~~i~  198 (264)
                      ......++..+.   ..++.+|||+|||+|.++..+++.. +..+|+++|+|+.+++.+.+.....       .++++++
T Consensus        15 ~~~~~~l~~~l~---~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~   90 (219)
T 3jwg_A           15 QQRLGTVVAVLK---SVNAKKVIDLGCGEGNLLSLLLKDK-SFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQ   90 (219)
T ss_dssp             HHHHHHHHHHHH---HTTCCEEEEETCTTCHHHHHHHTST-TCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEE
T ss_pred             HHHHHHHHHHHh---hcCCCEEEEecCCCCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEe
Confidence            334444444443   4678899999999999999999863 4569999999998876666554322       1899999


Q ss_pred             cCCCCchhhcccCCCccEEEEcCC
Q 024665          199 EDARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       199 ~D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      .|+...+.   ..++||+|++...
T Consensus        91 ~d~~~~~~---~~~~fD~V~~~~~  111 (219)
T 3jwg_A           91 SSLVYRDK---RFSGYDAATVIEV  111 (219)
T ss_dssp             CCSSSCCG---GGTTCSEEEEESC
T ss_pred             Cccccccc---ccCCCCEEEEHHH
Confidence            99966542   3468999998755

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.11  E-value=2.3e-10  Score=93.38  Aligned_cols=67  Identities=16%  Similarity=0.104  Sum_probs=56.1

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcC
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDV  221 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~  221 (264)
                      .++.+|||+|||+|.++..+++..    +|+++|+|+.+++.       ..+++++++|+.++.    ..++||+|++|+
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~-------~~~~~~~~~d~~~~~----~~~~fD~i~~n~   86 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES-------HRGGNLVRADLLCSI----NQESVDVVVFNP   86 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT-------CSSSCEEECSTTTTB----CGGGCSEEEECC
T ss_pred             CCCCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc-------ccCCeEEECChhhhc----ccCCCCEEEECC
Confidence            567799999999999999999863    89999999977533       458999999998743    236899999999


Q ss_pred             CC
Q 024665          222 AQ  223 (264)
Q Consensus       222 p~  223 (264)
                      |.
T Consensus        87 ~~   88 (170)
T 3q87_B           87 PY   88 (170)
T ss_dssp             CC
T ss_pred             CC
Confidence            83

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.11  E-value=1.9e-10  Score=96.50  Aligned_cols=76  Identities=12%  Similarity=0.083  Sum_probs=63.5

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      ...++.+|||+|||+|.++..+++..   .+|+++|+|+.+++.+.+......++++++.|+.++.    ..++||+|++
T Consensus        48 ~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~----~~~~fD~v~~  120 (216)
T 3ofk_A           48 SSGAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS----TAELFDLIVV  120 (216)
T ss_dssp             TTSSEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC----CSCCEEEEEE
T ss_pred             ccCCCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC----CCCCccEEEE
Confidence            36678899999999999999999873   4899999999887776666655568999999998865    3478999999


Q ss_pred             cCC
Q 024665          220 DVA  222 (264)
Q Consensus       220 d~p  222 (264)
                      ...
T Consensus       121 ~~~  123 (216)
T 3ofk_A          121 AEV  123 (216)
T ss_dssp             ESC
T ss_pred             ccH
Confidence            755

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.11  E-value=2.9e-10  Score=97.61  Aligned_cols=97  Identities=14%  Similarity=0.083  Sum_probs=68.1

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc--CCCeEEEEcCCCCchhhcccCCCccEEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--RTNVIPIIEDARHPAKYRMLVGMVDVIF  218 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~--~~nV~~i~~D~~~~~~~~~~~~~fD~V~  218 (264)
                      ++++.+|||+|||+|.+++.+|.. .+..+|++||+|+.+++.+.+.+..  ..||+++++|+.++.......++||+|+
T Consensus        68 ~~~~~~vLDiG~G~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~  146 (240)
T 1xdz_A           68 FNQVNTICDVGAGAGFPSLPIKIC-FPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVT  146 (240)
T ss_dssp             GGGCCEEEEECSSSCTTHHHHHHH-CTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEE
T ss_pred             cCCCCEEEEecCCCCHHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEE
Confidence            467889999999999999999975 3567999999999876555544432  2379999999977541101246899999


Q ss_pred             EcCCC-chHHHHHHHHHhCCC
Q 024665          219 SDVAQ-PDQVCFLCLILFQPI  238 (264)
Q Consensus       219 ~d~p~-~~~~~~~~~~~l~~~  238 (264)
                      ++... +..........++|+
T Consensus       147 ~~~~~~~~~~l~~~~~~Lkpg  167 (240)
T 1xdz_A          147 ARAVARLSVLSELCLPLVKKN  167 (240)
T ss_dssp             EECCSCHHHHHHHHGGGEEEE
T ss_pred             EeccCCHHHHHHHHHHhcCCC
Confidence            88653 333333333455555

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.10  E-value=1.4e-09  Score=94.06  Aligned_cols=90  Identities=12%  Similarity=0.139  Sum_probs=68.9

Q ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCch
Q 024665          126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPA  205 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~  205 (264)
                      ..++..++..+.   +.++++|||+|||+|.++..+++..   .+|+++|+|+.+++.+.+......|++++++|+.+.+
T Consensus        16 ~~~~~~i~~~~~---~~~~~~VLDiG~G~G~lt~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~   89 (244)
T 1qam_A           16 KHNIDKIMTNIR---LNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFK   89 (244)
T ss_dssp             HHHHHHHHTTCC---CCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCC
T ss_pred             HHHHHHHHHhCC---CCCCCEEEEEeCCchHHHHHHHHcC---CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCC
Confidence            456666665554   7889999999999999999999984   5899999999887766665544468999999998764


Q ss_pred             hhcccCCCccEEEEcCCCc
Q 024665          206 KYRMLVGMVDVIFSDVAQP  224 (264)
Q Consensus       206 ~~~~~~~~fD~V~~d~p~~  224 (264)
                      ..  ....| .|++|+|..
T Consensus        90 ~~--~~~~~-~vv~nlPy~  105 (244)
T 1qam_A           90 FP--KNQSY-KIFGNIPYN  105 (244)
T ss_dssp             CC--SSCCC-EEEEECCGG
T ss_pred             cc--cCCCe-EEEEeCCcc
Confidence            21  11244 688999953

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.10  E-value=6e-10  Score=90.80  Aligned_cols=118  Identities=10%  Similarity=0.075  Sum_probs=80.2

Q ss_pred             chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCC
Q 024665          125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDA  201 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~  201 (264)
                      ...+...++..+.   +.++.+|||+|||+|.++..++...   .+|+++|+|+.+++.+.+.....   .++++++.|+
T Consensus        18 ~~~~~~~~~~~~~---~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   91 (192)
T 1l3i_A           18 AMEVRCLIMCLAE---PGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDA   91 (192)
T ss_dssp             CHHHHHHHHHHHC---CCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCH
T ss_pred             hHHHHHHHHHhcC---CCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCH
Confidence            3445555554444   7899999999999999999999874   69999999988765555543322   5899999998


Q ss_pred             CCchhhcccCCCccEEEEcCCC--chHHHHHHHHHhCCC--------cHHHHHHHHHHhh
Q 024665          202 RHPAKYRMLVGMVDVIFSDVAQ--PDQVCFLCLILFQPI--------VINNLQSVNNETK  251 (264)
Q Consensus       202 ~~~~~~~~~~~~fD~V~~d~p~--~~~~~~~~~~~l~~~--------~~~~l~~~~~~Lk  251 (264)
                      .+..+   ....||+|+++.+.  ...........++|.        ......+..+.++
T Consensus        92 ~~~~~---~~~~~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~  148 (192)
T 1l3i_A           92 PEALC---KIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLR  148 (192)
T ss_dssp             HHHHT---TSCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHH
T ss_pred             HHhcc---cCCCCCEEEECCchHHHHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHH
Confidence            76321   12589999998773  333334444555555        2344555555555

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.10  E-value=1.8e-10  Score=103.07  Aligned_cols=95  Identities=12%  Similarity=0.034  Sum_probs=73.1

Q ss_pred             chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC-CCeEEEEcCCCC
Q 024665          125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARH  203 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~-~nV~~i~~D~~~  203 (264)
                      .+.+...++..|.   ++++.+|||+|||+|..+..+++.+. .++|+++|+|+.+++.+.+..... .+++++++|+.+
T Consensus        11 ~pvLl~e~l~~L~---~~~g~~vLD~g~G~G~~s~~la~~~~-~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~   86 (301)
T 1m6y_A           11 IPVMVREVIEFLK---PEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYRE   86 (301)
T ss_dssp             CCTTHHHHHHHHC---CCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGG
T ss_pred             cHHHHHHHHHhcC---CCCCCEEEEEeCCcCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHH
Confidence            3455566665555   88999999999999999999999864 679999999998876666555433 589999999988


Q ss_pred             chhh-cc-cCCCccEEEEcCCC
Q 024665          204 PAKY-RM-LVGMVDVIFSDVAQ  223 (264)
Q Consensus       204 ~~~~-~~-~~~~fD~V~~d~p~  223 (264)
                      ++.+ .. ...+||.|++|++.
T Consensus        87 l~~~l~~~g~~~~D~Vl~D~gv  108 (301)
T 1m6y_A           87 ADFLLKTLGIEKVDGILMDLGV  108 (301)
T ss_dssp             HHHHHHHTTCSCEEEEEEECSC
T ss_pred             HHHHHHhcCCCCCCEEEEcCcc
Confidence            6532 11 11579999999873

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.10  E-value=6.4e-10  Score=92.92  Aligned_cols=88  Identities=20%  Similarity=0.172  Sum_probs=67.9

Q ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCC
Q 024665          126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARH  203 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~  203 (264)
                      ..+...++..+.   ++++.+|||+|||+|.++..+++.   ..+|+++|+|+.+++.+.+.....  .|+++++.|+.+
T Consensus        63 ~~~~~~~~~~l~---~~~~~~vLdiG~G~G~~~~~la~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~  136 (210)
T 3lbf_A           63 PYMVARMTELLE---LTPQSRVLEIGTGSGYQTAILAHL---VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQ  136 (210)
T ss_dssp             HHHHHHHHHHTT---CCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG
T ss_pred             HHHHHHHHHhcC---CCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCccc
Confidence            344555554444   789999999999999999999998   359999999998876655554432  389999999987


Q ss_pred             chhhcccCCCccEEEEcCC
Q 024665          204 PAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       204 ~~~~~~~~~~fD~V~~d~p  222 (264)
                      ...   ..++||+|+++..
T Consensus       137 ~~~---~~~~~D~i~~~~~  152 (210)
T 3lbf_A          137 GWQ---ARAPFDAIIVTAA  152 (210)
T ss_dssp             CCG---GGCCEEEEEESSB
T ss_pred             CCc---cCCCccEEEEccc
Confidence            542   2468999999865

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.10  E-value=4e-10  Score=96.83  Aligned_cols=110  Identities=13%  Similarity=0.073  Sum_probs=77.1

Q ss_pred             ceEeCCcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEE
Q 024665          118 YRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPI  197 (264)
Q Consensus       118 yr~~~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i  197 (264)
                      |..+.......+..++..+.   +.++.+|||+|||+|.++..+++.. +..+|+++|+|+.+++.+.+.   ..+++++
T Consensus        11 y~~~~~~~~~~~~~l~~~~~---~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~---~~~~~~~   83 (259)
T 2p35_A           11 YLKFEDERTRPARDLLAQVP---LERVLNGYDLGCGPGNSTELLTDRY-GVNVITGIDSDDDMLEKAADR---LPNTNFG   83 (259)
T ss_dssp             GBCCCCGGGHHHHHHHTTCC---CSCCSSEEEETCTTTHHHHHHHHHH-CTTSEEEEESCHHHHHHHHHH---STTSEEE
T ss_pred             HHHHHHHHHHHHHHHHHhcC---CCCCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHh---CCCcEEE
Confidence            33333334555555654444   7788999999999999999999986 466899999999876544433   3589999


Q ss_pred             EcCCCCchhhcccCCCccEEEEcCC-----CchHHHHHHHHHhCCC
Q 024665          198 IEDARHPAKYRMLVGMVDVIFSDVA-----QPDQVCFLCLILFQPI  238 (264)
Q Consensus       198 ~~D~~~~~~~~~~~~~fD~V~~d~p-----~~~~~~~~~~~~l~~~  238 (264)
                      +.|+.+.+    ..++||+|+++..     .+..........++|+
T Consensus        84 ~~d~~~~~----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg  125 (259)
T 2p35_A           84 KADLATWK----PAQKADLLYANAVFQWVPDHLAVLSQLMDQLESG  125 (259)
T ss_dssp             ECCTTTCC----CSSCEEEEEEESCGGGSTTHHHHHHHHGGGEEEE
T ss_pred             ECChhhcC----ccCCcCEEEEeCchhhCCCHHHHHHHHHHhcCCC
Confidence            99998754    2468999999875     2333333344444554

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.10  E-value=1.4e-09  Score=88.80  Aligned_cols=87  Identities=14%  Similarity=0.081  Sum_probs=66.9

Q ss_pred             HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CC--eEEEEcCCC
Q 024665          127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TN--VIPIIEDAR  202 (264)
Q Consensus       127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~n--V~~i~~D~~  202 (264)
                      .....++..+.   ++++.+|||+|||+|.++..++..   ..+|+++|+++.+++.+.+.....  .+  +++++.|+.
T Consensus        39 ~~~~~l~~~~~---~~~~~~vLdiG~G~G~~~~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~  112 (194)
T 1dus_A           39 KGTKILVENVV---VDKDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLY  112 (194)
T ss_dssp             HHHHHHHHHCC---CCTTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTT
T ss_pred             hHHHHHHHHcc---cCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchh
Confidence            34455554444   678999999999999999999987   459999999998876655554332  25  999999998


Q ss_pred             CchhhcccCCCccEEEEcCCC
Q 024665          203 HPAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       203 ~~~~~~~~~~~fD~V~~d~p~  223 (264)
                      +..    ..++||+|+++++.
T Consensus       113 ~~~----~~~~~D~v~~~~~~  129 (194)
T 1dus_A          113 ENV----KDRKYNKIITNPPI  129 (194)
T ss_dssp             TTC----TTSCEEEEEECCCS
T ss_pred             ccc----ccCCceEEEECCCc
Confidence            743    24689999999883

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.10  E-value=4.6e-10  Score=96.11  Aligned_cols=93  Identities=18%  Similarity=0.086  Sum_probs=68.6

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc--CCCeEEEEcCCCCchhhcccCCCccEE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--RTNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~--~~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      .++++.+|||+|||+|.++..+++..   .+|+++|+|+.+++.+.+....  ..|+++++.|+.+++   ...++||+|
T Consensus        18 ~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~v   91 (239)
T 1xxl_A           18 ECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP---FPDDSFDII   91 (239)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCC---SCTTCEEEE
T ss_pred             CcCCCCEEEEEccCcCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCC---CCCCcEEEE
Confidence            48899999999999999999999874   3899999999887665554432  248999999998754   234689999


Q ss_pred             EEcCC-----CchHHHHHHHHHhCCC
Q 024665          218 FSDVA-----QPDQVCFLCLILFQPI  238 (264)
Q Consensus       218 ~~d~p-----~~~~~~~~~~~~l~~~  238 (264)
                      ++...     .+..........++|+
T Consensus        92 ~~~~~l~~~~~~~~~l~~~~~~Lkpg  117 (239)
T 1xxl_A           92 TCRYAAHHFSDVRKAVREVARVLKQD  117 (239)
T ss_dssp             EEESCGGGCSCHHHHHHHHHHHEEEE
T ss_pred             EECCchhhccCHHHHHHHHHHHcCCC
Confidence            98854     2333444444445544

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.10  E-value=7.8e-10  Score=97.95  Aligned_cols=89  Identities=13%  Similarity=0.229  Sum_probs=70.0

Q ss_pred             HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCCC
Q 024665          127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARH  203 (264)
Q Consensus       127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~~  203 (264)
                      .++..++..+.   +.++++|||+|||+|.++..+++..   .+|++||+|+.+++.+.+.....   .+++++++|+.+
T Consensus        15 ~i~~~i~~~~~---~~~~~~VLDiG~G~G~lt~~L~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~   88 (285)
T 1zq9_A           15 LIINSIIDKAA---LRPTDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLK   88 (285)
T ss_dssp             HHHHHHHHHTC---CCTTCEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTT
T ss_pred             HHHHHHHHhcC---CCCCCEEEEEcCcccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceec
Confidence            45556655544   7889999999999999999999983   48999999998877666654332   489999999987


Q ss_pred             chhhcccCCCccEEEEcCCCchH
Q 024665          204 PAKYRMLVGMVDVIFSDVAQPDQ  226 (264)
Q Consensus       204 ~~~~~~~~~~fD~V~~d~p~~~~  226 (264)
                      .+     ...||+|++|+|..+.
T Consensus        89 ~~-----~~~fD~vv~nlpy~~~  106 (285)
T 1zq9_A           89 TD-----LPFFDTCVANLPYQIS  106 (285)
T ss_dssp             SC-----CCCCSEEEEECCGGGH
T ss_pred             cc-----chhhcEEEEecCcccc
Confidence            54     1379999999995443

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.10  E-value=2e-10  Score=97.02  Aligned_cols=98  Identities=17%  Similarity=0.119  Sum_probs=71.0

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh---cCCCeEEEEcCCCCchhh-ccc-CCCcc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK---KRTNVIPIIEDARHPAKY-RML-VGMVD  215 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~---~~~nV~~i~~D~~~~~~~-~~~-~~~fD  215 (264)
                      +.++.+|||+|||+|.++..+|+.+.+.++|+++|+++.+++.+.+...   ...+|+++++|+.+..+. ... ..+||
T Consensus        56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD  135 (223)
T 3duw_A           56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD  135 (223)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred             hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence            5678899999999999999999987657899999999887655544433   223699999999764321 111 15799


Q ss_pred             EEEEcCCCch--HHHHHHHHHhCCC
Q 024665          216 VIFSDVAQPD--QVCFLCLILFQPI  238 (264)
Q Consensus       216 ~V~~d~p~~~--~~~~~~~~~l~~~  238 (264)
                      +|++|.+.+.  .........++|+
T Consensus       136 ~v~~d~~~~~~~~~l~~~~~~L~pg  160 (223)
T 3duw_A          136 FIFIDADKQNNPAYFEWALKLSRPG  160 (223)
T ss_dssp             EEEECSCGGGHHHHHHHHHHTCCTT
T ss_pred             EEEEcCCcHHHHHHHHHHHHhcCCC
Confidence            9999988543  3334445556666

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.10  E-value=8.1e-11  Score=100.66  Aligned_cols=77  Identities=25%  Similarity=0.281  Sum_probs=60.4

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC-CCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~-~nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      ++++.+|||+|||+|.++..+++.  ...+|+++|+|+.+++.+.+.+... .+++++++|+.+... ....++||+|++
T Consensus        58 ~~~~~~vLDiGcGtG~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-~~~~~~fD~V~~  134 (236)
T 1zx0_A           58 SSKGGRVLEVGFGMAIAASKVQEA--PIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAP-TLPDGHFDGILY  134 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHHTS--CEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGG-GSCTTCEEEEEE
T ss_pred             CCCCCeEEEEeccCCHHHHHHHhc--CCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhc-ccCCCceEEEEE
Confidence            568899999999999999999764  2348999999999987766655433 489999999987521 123468999999


Q ss_pred             c
Q 024665          220 D  220 (264)
Q Consensus       220 d  220 (264)
                      |
T Consensus       135 d  135 (236)
T 1zx0_A          135 D  135 (236)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.10  E-value=1.3e-10  Score=99.37  Aligned_cols=75  Identities=16%  Similarity=-0.055  Sum_probs=62.0

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCCCchhhcccCCCccEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      ..++.+|||+|||+|.+++.++..   ..+|+++|+|+.+++.+.+.+...   .+++++++|+.++.    ...+||+|
T Consensus        76 ~~~~~~vLD~gcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~D~v  148 (241)
T 3gdh_A           76 SFKCDVVVDAFCGVGGNTIQFALT---GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA----SFLKADVV  148 (241)
T ss_dssp             HSCCSEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG----GGCCCSEE
T ss_pred             ccCCCEEEECccccCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc----ccCCCCEE
Confidence            447899999999999999999986   269999999998876665555433   38999999998765    23689999


Q ss_pred             EEcCC
Q 024665          218 FSDVA  222 (264)
Q Consensus       218 ~~d~p  222 (264)
                      ++|+|
T Consensus       149 ~~~~~  153 (241)
T 3gdh_A          149 FLSPP  153 (241)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99998

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.09  E-value=2.3e-10  Score=98.62  Aligned_cols=94  Identities=15%  Similarity=0.169  Sum_probs=66.0

Q ss_pred             CCCCEEEEEcccCChHHHHHHHH---hCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCC-CccEE
Q 024665          142 KPGARVLYLGAASGTTVSHVSDI---VGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVG-MVDVI  217 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~---~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~-~fD~V  217 (264)
                      .+..+|||||||+|.++..||+.   +.+.++|++||+|+.+++.+.   ....||+++++|+.+......... +||+|
T Consensus        80 ~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~---~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I  156 (236)
T 2bm8_A           80 LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA---SDMENITLHQGDCSDLTTFEHLREMAHPLI  156 (236)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG---GGCTTEEEEECCSSCSGGGGGGSSSCSSEE
T ss_pred             cCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh---ccCCceEEEECcchhHHHHHhhccCCCCEE
Confidence            35679999999999999999998   567789999999986632221   223589999999988521112233 79999


Q ss_pred             EEcCCCchH--HHHHHHH-HhCCC
Q 024665          218 FSDVAQPDQ--VCFLCLI-LFQPI  238 (264)
Q Consensus       218 ~~d~p~~~~--~~~~~~~-~l~~~  238 (264)
                      ++|....+.  ....... .++|+
T Consensus       157 ~~d~~~~~~~~~l~~~~r~~LkpG  180 (236)
T 2bm8_A          157 FIDNAHANTFNIMKWAVDHLLEEG  180 (236)
T ss_dssp             EEESSCSSHHHHHHHHHHHTCCTT
T ss_pred             EECCchHhHHHHHHHHHHhhCCCC
Confidence            998874322  2222332 66666

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.08  E-value=7e-10  Score=99.43  Aligned_cols=92  Identities=28%  Similarity=0.361  Sum_probs=71.2

Q ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCC
Q 024665          126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARH  203 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~  203 (264)
                      +.+...++..+.   ++++++|||+|||+|.++..+++.....++|+++|+|+.+++.+.+.....  .|+++++.|+.+
T Consensus        61 ~~~~~~l~~~l~---~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~  137 (317)
T 1dl5_A           61 PSLMALFMEWVG---LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYY  137 (317)
T ss_dssp             HHHHHHHHHHTT---CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG
T ss_pred             HHHHHHHHHhcC---CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhh
Confidence            345555555544   889999999999999999999998754578999999998876655554332  379999999987


Q ss_pred             chhhcccCCCccEEEEcCCC
Q 024665          204 PAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       204 ~~~~~~~~~~fD~V~~d~p~  223 (264)
                      ...   ..++||+|+++.+.
T Consensus       138 ~~~---~~~~fD~Iv~~~~~  154 (317)
T 1dl5_A          138 GVP---EFSPYDVIFVTVGV  154 (317)
T ss_dssp             CCG---GGCCEEEEEECSBB
T ss_pred             ccc---cCCCeEEEEEcCCH
Confidence            432   23689999999774

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.08  E-value=3.3e-10  Score=98.73  Aligned_cols=77  Identities=17%  Similarity=0.142  Sum_probs=61.2

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc-------------------CCCeEEEEcCC
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-------------------RTNVIPIIEDA  201 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~-------------------~~nV~~i~~D~  201 (264)
                      +.++.+|||+|||+|..+..||+.   ..+|+|||+|+.|++.+.+.+..                   ..+|+++++|+
T Consensus        66 ~~~~~~vLD~GCG~G~~~~~La~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~  142 (252)
T 2gb4_A           66 GQSGLRVFFPLCGKAIEMKWFADR---GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSI  142 (252)
T ss_dssp             TCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCT
T ss_pred             CCCCCeEEEeCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcc
Confidence            467899999999999999999986   34899999999998776555431                   25899999999


Q ss_pred             CCchhhcccCCCccEEEEcCC
Q 024665          202 RHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       202 ~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      .+++..  ..++||+|++...
T Consensus       143 ~~l~~~--~~~~FD~V~~~~~  161 (252)
T 2gb4_A          143 FDLPRA--NIGKFDRIWDRGA  161 (252)
T ss_dssp             TTGGGG--CCCCEEEEEESSS
T ss_pred             ccCCcc--cCCCEEEEEEhhh
Confidence            987531  1268999997644

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.08  E-value=5.8e-10  Score=97.73  Aligned_cols=92  Identities=17%  Similarity=0.135  Sum_probs=69.6

Q ss_pred             CcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcC
Q 024665          123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIED  200 (264)
Q Consensus       123 p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D  200 (264)
                      |.+..+...++..+.    .++.+|||+|||+|.+++.++... +..+|+++|+|+.+++.+.+++...  .|+++++.|
T Consensus        93 ~~te~l~~~~l~~~~----~~~~~vLDlG~GsG~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d  167 (276)
T 2b3t_A           93 PDTECLVEQALARLP----EQPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSD  167 (276)
T ss_dssp             TTHHHHHHHHHHHSC----SSCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCS
T ss_pred             chHHHHHHHHHHhcc----cCCCEEEEecCCccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcc
Confidence            334556666654432    567899999999999999999875 5679999999998866555544322  379999999


Q ss_pred             CCCchhhcccCCCccEEEEcCCC
Q 024665          201 ARHPAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       201 ~~~~~~~~~~~~~fD~V~~d~p~  223 (264)
                      +.+...    .++||+|++|+|.
T Consensus       168 ~~~~~~----~~~fD~Iv~npPy  186 (276)
T 2b3t_A          168 WFSALA----GQQFAMIVSNPPY  186 (276)
T ss_dssp             TTGGGT----TCCEEEEEECCCC
T ss_pred             hhhhcc----cCCccEEEECCCC
Confidence            987532    4689999999984

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.08  E-value=5.3e-10  Score=94.07  Aligned_cols=107  Identities=16%  Similarity=0.130  Sum_probs=74.4

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc------CCCeEEEEcCCCCchhhcccCCCc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK------RTNVIPIIEDARHPAKYRMLVGMV  214 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~------~~nV~~i~~D~~~~~~~~~~~~~f  214 (264)
                      ++++.+|||+|||+|.++..+++.. |..+|+++|+|+.|++.+.+.+..      .+|+++++.|+.+++.   ..+. 
T Consensus        25 ~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~---~~~~-   99 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDGKHPYKVARQN-PSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPP---LSGV-   99 (218)
T ss_dssp             TTSSEEEEEESCTTCHHHHHHHHHC-TTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCS---CCCE-
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCC---CCCC-
Confidence            7889999999999999999999974 577999999999876554443322      2389999999998652   2344 


Q ss_pred             cEEEEcCCCchHHHHHHHHHhCCCcHHHHHHHHHHhh-cchhhh
Q 024665          215 DVIFSDVAQPDQVCFLCLILFQPIVINNLQSVNNETK-GGIFEF  257 (264)
Q Consensus       215 D~V~~d~p~~~~~~~~~~~~l~~~~~~~l~~~~~~Lk-~g~f~~  257 (264)
                      |.|++..+....     +..+.+.....+.++.+.|+ +|.+.+
T Consensus       100 d~v~~~~~~~~~-----~~~~~~~~~~~l~~~~~~LkpgG~l~~  138 (218)
T 3mq2_A          100 GELHVLMPWGSL-----LRGVLGSSPEMLRGMAAVCRPGASFLV  138 (218)
T ss_dssp             EEEEEESCCHHH-----HHHHHTSSSHHHHHHHHTEEEEEEEEE
T ss_pred             CEEEEEccchhh-----hhhhhccHHHHHHHHHHHcCCCcEEEE
Confidence            888766552211     11223333556677777777 665544

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.08  E-value=7.1e-10  Score=95.64  Aligned_cols=80  Identities=6%  Similarity=-0.044  Sum_probs=60.6

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCCCc-h-hhccc-CCCccE
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHP-A-KYRML-VGMVDV  216 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~~~-~-~~~~~-~~~fD~  216 (264)
                      ++.+|||+|||+|.+++.++... +..+|+++|+|+.+++.+.+.+...   .+|+++++|+.+. . ..... .++||+
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~  143 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF  143 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccE
Confidence            67899999999999999999875 3569999999998876655554432   2599999998762 2 11100 158999


Q ss_pred             EEEcCCC
Q 024665          217 IFSDVAQ  223 (264)
Q Consensus       217 V~~d~p~  223 (264)
                      |++|+|.
T Consensus       144 i~~npp~  150 (254)
T 2h00_A          144 CMCNPPF  150 (254)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999984

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.07  E-value=1.2e-09  Score=96.22  Aligned_cols=78  Identities=15%  Similarity=0.094  Sum_probs=62.2

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh---cCCCeEEEEcCCCCchhhcccCCCccE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK---KRTNVIPIIEDARHPAKYRMLVGMVDV  216 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~---~~~nV~~i~~D~~~~~~~~~~~~~fD~  216 (264)
                      .+.++.+|||+|||+|.++..+++.++  .+|+++|+|+.+++.+.+...   ...+|++++.|+.+++   ...++||+
T Consensus        79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD~  153 (297)
T 2o57_A           79 VLQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP---CEDNSYDF  153 (297)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS---SCTTCEEE
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCC---CCCCCEeE
Confidence            378899999999999999999999863  489999999888655554432   2358999999998864   23468999


Q ss_pred             EEEcCC
Q 024665          217 IFSDVA  222 (264)
Q Consensus       217 V~~d~p  222 (264)
                      |++...
T Consensus       154 v~~~~~  159 (297)
T 2o57_A          154 IWSQDA  159 (297)
T ss_dssp             EEEESC
T ss_pred             EEecch
Confidence            998654

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.07  E-value=3.6e-10  Score=96.07  Aligned_cols=104  Identities=17%  Similarity=0.053  Sum_probs=72.3

Q ss_pred             CcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCC
Q 024665          123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDAR  202 (264)
Q Consensus       123 p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~  202 (264)
                      |....+...++..    .++++.+|||+|||+|.++..+++.   ..+|+++|+|+.+++.+.+.   .+++++++.|+.
T Consensus        32 ~~~~~l~~~~~~~----~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~---~~~~~~~~~d~~  101 (226)
T 3m33_A           32 PDPELTFDLWLSR----LLTPQTRVLEAGCGHGPDAARFGPQ---AARWAAYDFSPELLKLARAN---APHADVYEWNGK  101 (226)
T ss_dssp             SCTTHHHHHHHHH----HCCTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHH---CTTSEEEECCSC
T ss_pred             CCHHHHHHHHHHh----cCCCCCeEEEeCCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHh---CCCceEEEcchh
Confidence            3344555555422    2568899999999999999999987   35999999999886554443   458999999996


Q ss_pred             CchhhcccCCCccEEEEcCCCchHHHHHHHHHhCCC
Q 024665          203 HPAKYRMLVGMVDVIFSDVAQPDQVCFLCLILFQPI  238 (264)
Q Consensus       203 ~~~~~~~~~~~fD~V~~d~p~~~~~~~~~~~~l~~~  238 (264)
                      +..++ ...++||+|+++. .+..........++|+
T Consensus       102 ~~~~~-~~~~~fD~v~~~~-~~~~~l~~~~~~Lkpg  135 (226)
T 3m33_A          102 GELPA-GLGAPFGLIVSRR-GPTSVILRLPELAAPD  135 (226)
T ss_dssp             SSCCT-TCCCCEEEEEEES-CCSGGGGGHHHHEEEE
T ss_pred             hccCC-cCCCCEEEEEeCC-CHHHHHHHHHHHcCCC
Confidence            54332 1146899999983 3334444445555554

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.07  E-value=1.7e-09  Score=95.72  Aligned_cols=76  Identities=21%  Similarity=0.124  Sum_probs=62.6

Q ss_pred             cCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCCCchhhcccCCCcc
Q 024665          139 IWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVD  215 (264)
Q Consensus       139 ~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~~~~~~~~~~~~fD  215 (264)
                      +.++++.+|||+|||+|.++..+++..+  .+|+++|+|+.+++.+.+.....   .+|++++.|+.++      .++||
T Consensus        68 ~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~fD  139 (302)
T 3hem_A           68 LNLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF------DEPVD  139 (302)
T ss_dssp             TCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC------CCCCS
T ss_pred             cCCCCcCEEEEeeccCcHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc------CCCcc
Confidence            3488999999999999999999999864  68999999998876665555432   3899999999764      47899


Q ss_pred             EEEEcCC
Q 024665          216 VIFSDVA  222 (264)
Q Consensus       216 ~V~~d~p  222 (264)
                      +|++...
T Consensus       140 ~v~~~~~  146 (302)
T 3hem_A          140 RIVSLGA  146 (302)
T ss_dssp             EEEEESC
T ss_pred             EEEEcch
Confidence            9998654

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.07  E-value=2.1e-10  Score=92.23  Aligned_cols=95  Identities=14%  Similarity=-0.051  Sum_probs=66.5

Q ss_pred             chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC-CeEEEEcCCCC
Q 024665          125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT-NVIPIIEDARH  203 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~-nV~~i~~D~~~  203 (264)
                      ...+...++..+.. .+.++.+|||+|||+|.++..++... +  .|+++|+|+.+++.+.+...... ++++++.|+.+
T Consensus        24 ~~~~~~~~~~~~~~-~~~~~~~vLD~GcG~G~~~~~l~~~~-~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~   99 (171)
T 1ws6_A           24 PVRLRKALFDYLRL-RYPRRGRFLDPFAGSGAVGLEAASEG-W--EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEV   99 (171)
T ss_dssp             CHHHHHHHHHHHHH-HCTTCCEEEEETCSSCHHHHHHHHTT-C--EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHH
T ss_pred             HHHHHHHHHHHHHh-hccCCCeEEEeCCCcCHHHHHHHHCC-C--eEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHH
Confidence            44455555544431 13378899999999999999999873 2  49999999988766555443322 89999999987


Q ss_pred             chhh-cccCCCccEEEEcCCC
Q 024665          204 PAKY-RMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       204 ~~~~-~~~~~~fD~V~~d~p~  223 (264)
                      ..+. ....++||+|++|+|.
T Consensus       100 ~~~~~~~~~~~~D~i~~~~~~  120 (171)
T 1ws6_A          100 FLPEAKAQGERFTVAFMAPPY  120 (171)
T ss_dssp             HHHHHHHTTCCEEEEEECCCT
T ss_pred             HHHhhhccCCceEEEEECCCC
Confidence            4321 1112479999999873

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.07  E-value=5.9e-10  Score=95.87  Aligned_cols=77  Identities=13%  Similarity=-0.040  Sum_probs=61.6

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhcccCCCccEEE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRMLVGMVDVIF  218 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~~~~~fD~V~  218 (264)
                      .+.++.+|||+|||+|.++..+++.   ..+|+++|+|+.+++.+.+... ...|+++++.|+.+.+   ...++||+|+
T Consensus        36 ~~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD~v~  109 (263)
T 2yqz_A           36 PKGEEPVFLELGVGTGRIALPLIAR---GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIP---LPDESVHGVI  109 (263)
T ss_dssp             CSSSCCEEEEETCTTSTTHHHHHTT---TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCC---SCTTCEEEEE
T ss_pred             CCCCCCEEEEeCCcCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCC---CCCCCeeEEE
Confidence            4678899999999999999999976   3589999999988766555541 2358999999998754   2346899999


Q ss_pred             EcCC
Q 024665          219 SDVA  222 (264)
Q Consensus       219 ~d~p  222 (264)
                      +...
T Consensus       110 ~~~~  113 (263)
T 2yqz_A          110 VVHL  113 (263)
T ss_dssp             EESC
T ss_pred             ECCc
Confidence            8765

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.07  E-value=3.6e-10  Score=95.69  Aligned_cols=98  Identities=16%  Similarity=0.165  Sum_probs=69.0

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh---cCCCeEEEEcCCCCchhh-ccc--CCCc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK---KRTNVIPIIEDARHPAKY-RML--VGMV  214 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~---~~~nV~~i~~D~~~~~~~-~~~--~~~f  214 (264)
                      +.++.+|||+|||+|.+++.+++.+.+.++|+++|+++.+++.+.+...   ...+|+++++|+.+.... ...  .++|
T Consensus        67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~  146 (229)
T 2avd_A           67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF  146 (229)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred             hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence            5677899999999999999999887557899999999877655544433   235899999998764321 000  1689


Q ss_pred             cEEEEcCCCc--hHHHHHHHHHhCCC
Q 024665          215 DVIFSDVAQP--DQVCFLCLILFQPI  238 (264)
Q Consensus       215 D~V~~d~p~~--~~~~~~~~~~l~~~  238 (264)
                      |+|++|++..  ..........++|+
T Consensus       147 D~v~~d~~~~~~~~~l~~~~~~L~pg  172 (229)
T 2avd_A          147 DVAVVDADKENCSAYYERCLQLLRPG  172 (229)
T ss_dssp             EEEEECSCSTTHHHHHHHHHHHEEEE
T ss_pred             cEEEECCCHHHHHHHHHHHHHHcCCC
Confidence            9999998733  23333344444444

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.07  E-value=1.3e-09  Score=93.74  Aligned_cols=101  Identities=19%  Similarity=0.135  Sum_probs=73.8

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      ..++.+|||+|||+|.++..+++. + ..+|+++|+|+.+++.+.+... ..++++++.|+.+++   ...++||+|++.
T Consensus        42 ~~~~~~vLD~GcG~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~~---~~~~~fD~v~~~  115 (253)
T 3g5l_A           42 DFNQKTVLDLGCGFGWHCIYAAEH-G-AKKVLGIDLSERMLTEAKRKTT-SPVVCYEQKAIEDIA---IEPDAYNVVLSS  115 (253)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHCC-CTTEEEEECCGGGCC---CCTTCEEEEEEE
T ss_pred             ccCCCEEEEECCCCCHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHhhc-cCCeEEEEcchhhCC---CCCCCeEEEEEc
Confidence            558899999999999999999987 2 3389999999988766555443 458999999998754   235789999987


Q ss_pred             CCCchHHHHHHHHHhCCCcHHHHHHHHHHhh-cchhhh
Q 024665          221 VAQPDQVCFLCLILFQPIVINNLQSVNNETK-GGIFEF  257 (264)
Q Consensus       221 ~p~~~~~~~~~~~~l~~~~~~~l~~~~~~Lk-~g~f~~  257 (264)
                      ....          +.+.....+.++.+.|+ +|.+.+
T Consensus       116 ~~l~----------~~~~~~~~l~~~~~~LkpgG~l~~  143 (253)
T 3g5l_A          116 LALH----------YIASFDDICKKVYINLKSSGSFIF  143 (253)
T ss_dssp             SCGG----------GCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             hhhh----------hhhhHHHHHHHHHHHcCCCcEEEE
Confidence            5421          11234455667777777 555543

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.07  E-value=6.7e-10  Score=94.03  Aligned_cols=97  Identities=20%  Similarity=0.205  Sum_probs=70.1

Q ss_pred             HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhC----CCCEEEEEeCChHHHHHHHHHhhc-------CCCeE
Q 024665          127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVG----PNGVVYAVEFSHRSGRDLVNMAKK-------RTNVI  195 (264)
Q Consensus       127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~----~~g~V~avD~s~~~~~~l~~~a~~-------~~nV~  195 (264)
                      .+.+.++..+.. .++++.+|||+|||+|.++..+++.+.    +.++|+++|+++.+++.+.+....       ..|++
T Consensus        65 ~~~~~~~~~l~~-~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~  143 (227)
T 2pbf_A           65 HMHALSLKRLIN-VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFK  143 (227)
T ss_dssp             HHHHHHHHHHTT-TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEE
T ss_pred             HHHHHHHHHHHh-hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEE
Confidence            344444444421 478899999999999999999999976    677999999998886555544332       34899


Q ss_pred             EEEcCCCCchhh-cccCCCccEEEEcCCCc
Q 024665          196 PIIEDARHPAKY-RMLVGMVDVIFSDVAQP  224 (264)
Q Consensus       196 ~i~~D~~~~~~~-~~~~~~fD~V~~d~p~~  224 (264)
                      +++.|+.+.... .....+||+|+++.+.+
T Consensus       144 ~~~~d~~~~~~~~~~~~~~fD~I~~~~~~~  173 (227)
T 2pbf_A          144 IIHKNIYQVNEEEKKELGLFDAIHVGASAS  173 (227)
T ss_dssp             EEECCGGGCCHHHHHHHCCEEEEEECSBBS
T ss_pred             EEECChHhcccccCccCCCcCEEEECCchH
Confidence            999999874300 00136899999987754

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.06  E-value=6e-10  Score=103.44  Aligned_cols=91  Identities=18%  Similarity=0.129  Sum_probs=65.6

Q ss_pred             HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHH----------hhc-CCCeE
Q 024665          127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNM----------AKK-RTNVI  195 (264)
Q Consensus       127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~----------a~~-~~nV~  195 (264)
                      .....++..+   .++++++|||||||+|.+++.+|...+ ..+|+|||+++.+++.+.++          +.. ..+|+
T Consensus       160 ~~i~~il~~l---~l~~gd~VLDLGCGtG~l~l~lA~~~g-~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVe  235 (438)
T 3uwp_A          160 DLVAQMIDEI---KMTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYT  235 (438)
T ss_dssp             HHHHHHHHHH---CCCTTCEEEEESCTTSHHHHHHHHHCC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEE
T ss_pred             HHHHHHHHhc---CCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeE
Confidence            3445555444   499999999999999999999998753 45799999998664333221          112 25899


Q ss_pred             EEEcCCCCchhhcccCCCccEEEEcCC
Q 024665          196 PIIEDARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       196 ~i~~D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      ++++|+.+++.. .....||+|+++.+
T Consensus       236 fi~GD~~~lp~~-d~~~~aDVVf~Nn~  261 (438)
T 3uwp_A          236 LERGDFLSEEWR-ERIANTSVIFVNNF  261 (438)
T ss_dssp             EEECCTTSHHHH-HHHHTCSEEEECCT
T ss_pred             EEECcccCCccc-cccCCccEEEEccc
Confidence            999999986521 11247999999876

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.06  E-value=2e-10  Score=92.12  Aligned_cols=74  Identities=28%  Similarity=0.291  Sum_probs=59.7

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhh---c--ccCCCc
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY---R--MLVGMV  214 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~---~--~~~~~f  214 (264)
                      .++++.+|||+|||+|.++..+++.+++..+|+++|+++ +.+        ..++++++.|+.+.+..   .  ...++|
T Consensus        19 ~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~--------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~   89 (180)
T 1ej0_A           19 LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDP--------IVGVDFLQGDFRDELVMKALLERVGDSKV   89 (180)
T ss_dssp             CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCC--------CTTEEEEESCTTSHHHHHHHHHHHTTCCE
T ss_pred             CCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccc--------cCcEEEEEcccccchhhhhhhccCCCCce
Confidence            367899999999999999999999987667999999998 521        15899999999886410   0  123689


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+|+++.+
T Consensus        90 D~i~~~~~   97 (180)
T 1ej0_A           90 QVVMSDMA   97 (180)
T ss_dssp             EEEEECCC
T ss_pred             eEEEECCC
Confidence            99999887

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.06  E-value=1.7e-09  Score=96.29  Aligned_cols=77  Identities=13%  Similarity=0.105  Sum_probs=62.6

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCCCchhhcccCCCccEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      ++++.+|||+|||+|.++..+++..  ..+|+++|+|+.+++.+.+.+...   .|++++++|+.+++   ...++||+|
T Consensus       115 ~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~V  189 (312)
T 3vc1_A          115 AGPDDTLVDAGCGRGGSMVMAHRRF--GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTP---FDKGAVTAS  189 (312)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC---CCTTCEEEE
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCC---CCCCCEeEE
Confidence            7889999999999999999999985  358999999998876655554432   48999999998764   234789999


Q ss_pred             EEcCC
Q 024665          218 FSDVA  222 (264)
Q Consensus       218 ~~d~p  222 (264)
                      ++...
T Consensus       190 ~~~~~  194 (312)
T 3vc1_A          190 WNNES  194 (312)
T ss_dssp             EEESC
T ss_pred             EECCc
Confidence            98644

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.06  E-value=1.1e-09  Score=91.79  Aligned_cols=92  Identities=25%  Similarity=0.373  Sum_probs=69.5

Q ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc--CCCeEEEEcCCCC
Q 024665          126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--RTNVIPIIEDARH  203 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~--~~nV~~i~~D~~~  203 (264)
                      +.+...++..+.   +.++.+|||+|||+|.++..++...++..+|+++|+++.+++.+.+....  ..++++++.|+.+
T Consensus        63 ~~~~~~~~~~~~---~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~  139 (215)
T 2yxe_A           63 IHMVGMMCELLD---LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTL  139 (215)
T ss_dssp             HHHHHHHHHHTT---CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGG
T ss_pred             HHHHHHHHHhhC---CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCccc
Confidence            345555554443   78999999999999999999999986667999999998886555544332  2479999999865


Q ss_pred             chhhcccCCCccEEEEcCCC
Q 024665          204 PAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       204 ~~~~~~~~~~fD~V~~d~p~  223 (264)
                      ...   ...+||+|+++.+.
T Consensus       140 ~~~---~~~~fD~v~~~~~~  156 (215)
T 2yxe_A          140 GYE---PLAPYDRIYTTAAG  156 (215)
T ss_dssp             CCG---GGCCEEEEEESSBB
T ss_pred             CCC---CCCCeeEEEECCch
Confidence            332   23689999998763

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.06  E-value=6.4e-11  Score=104.12  Aligned_cols=74  Identities=23%  Similarity=0.225  Sum_probs=55.8

Q ss_pred             cccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC------CeEEE--EcCCCCchhhc
Q 024665          137 DNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT------NVIPI--IEDARHPAKYR  208 (264)
Q Consensus       137 ~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~------nV~~i--~~D~~~~~~~~  208 (264)
                      +...++++.+|||||||+|.++..+++.    ++|+|||+++ ++..+.+ . ...      ||+++  ++|+++++   
T Consensus        68 ~~~~~~~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~-m~~~a~~-~-~~~~~~~~~~v~~~~~~~D~~~l~---  137 (265)
T 2oxt_A           68 ERGYVELTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYT-LGVGGHE-V-PRITESYGWNIVKFKSRVDIHTLP---  137 (265)
T ss_dssp             HHTSCCCCEEEEEESCTTSHHHHHHHTS----TTEEEEEEEC-CCCSSCC-C-CCCCCBTTGGGEEEECSCCTTTSC---
T ss_pred             HcCCCCCCCEEEEeCcCCCHHHHHHHHc----CcEEEEECch-hhhhhhh-h-hhhhhccCCCeEEEecccCHhHCC---
Confidence            3345789999999999999999999976    4799999998 3111000 1 111      78999  99998754   


Q ss_pred             ccCCCccEEEEcCC
Q 024665          209 MLVGMVDVIFSDVA  222 (264)
Q Consensus       209 ~~~~~fD~V~~d~p  222 (264)
                        .++||+|++|++
T Consensus       138 --~~~fD~V~sd~~  149 (265)
T 2oxt_A          138 --VERTDVIMCDVG  149 (265)
T ss_dssp             --CCCCSEEEECCC
T ss_pred             --CCCCcEEEEeCc
Confidence              368999999976

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.05  E-value=6.1e-10  Score=96.55  Aligned_cols=98  Identities=13%  Similarity=0.060  Sum_probs=70.7

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcc----cCCC
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRM----LVGM  213 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~----~~~~  213 (264)
                      +.+..+|||+|||+|..++.+|..+.+.++|+++|+++.+++.+.+....   ..+|+++++|+.+..+...    ..++
T Consensus        77 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~  156 (247)
T 1sui_A           77 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS  156 (247)
T ss_dssp             HTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTC
T ss_pred             hhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCC
Confidence            45667999999999999999999886578999999998776555444332   2479999999987532100    1468


Q ss_pred             ccEEEEcCCCc--hHHHHHHHHHhCCC
Q 024665          214 VDVIFSDVAQP--DQVCFLCLILFQPI  238 (264)
Q Consensus       214 fD~V~~d~p~~--~~~~~~~~~~l~~~  238 (264)
                      ||+||+|....  .......+..++|+
T Consensus       157 fD~V~~d~~~~~~~~~l~~~~~~LkpG  183 (247)
T 1sui_A          157 YDFIFVDADKDNYLNYHKRLIDLVKVG  183 (247)
T ss_dssp             BSEEEECSCSTTHHHHHHHHHHHBCTT
T ss_pred             EEEEEEcCchHHHHHHHHHHHHhCCCC
Confidence            99999997632  33344455556665

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.05  E-value=4.3e-10  Score=95.79  Aligned_cols=97  Identities=20%  Similarity=0.291  Sum_probs=69.1

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcccCCCccEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      +.++.+|||+|||+|.++..+++.+ +..+|+++|+++.+++.+.+....   ..+|+++++|+.+..+.....++||+|
T Consensus        52 ~~~~~~vLdiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I  130 (233)
T 2gpy_A           52 MAAPARILEIGTAIGYSAIRMAQAL-PEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVL  130 (233)
T ss_dssp             HHCCSEEEEECCTTSHHHHHHHHHC-TTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEE
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEE
Confidence            5678899999999999999999986 467999999998876555554432   247999999998753321114689999


Q ss_pred             EEcCCCch--HHHHHHHHHhCCC
Q 024665          218 FSDVAQPD--QVCFLCLILFQPI  238 (264)
Q Consensus       218 ~~d~p~~~--~~~~~~~~~l~~~  238 (264)
                      +++.+.++  .........++|+
T Consensus       131 ~~~~~~~~~~~~l~~~~~~L~pg  153 (233)
T 2gpy_A          131 FIDAAKGQYRRFFDMYSPMVRPG  153 (233)
T ss_dssp             EEEGGGSCHHHHHHHHGGGEEEE
T ss_pred             EECCCHHHHHHHHHHHHHHcCCC
Confidence            99987432  2223333444444

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.05  E-value=3.5e-10  Score=98.98  Aligned_cols=88  Identities=16%  Similarity=0.192  Sum_probs=67.8

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      +.++.+|||+|||+|.++..+++   +..+|+++|+|+.+++.+.+..   +++++++.|+.+++    ..++||+|++.
T Consensus        55 ~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~---~~~~~~~~d~~~~~----~~~~fD~v~~~  124 (279)
T 3ccf_A           55 PQPGEFILDLGCGTGQLTEKIAQ---SGAEVLGTDNAATMIEKARQNY---PHLHFDVADARNFR----VDKPLDAVFSN  124 (279)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHH---TTCEEEEEESCHHHHHHHHHHC---TTSCEEECCTTTCC----CSSCEEEEEEE
T ss_pred             CCCCCEEEEecCCCCHHHHHHHh---CCCeEEEEECCHHHHHHHHhhC---CCCEEEECChhhCC----cCCCcCEEEEc
Confidence            67889999999999999999998   4569999999998865544332   58999999998854    24689999987


Q ss_pred             CC-----CchHHHHHHHHHhCCC
Q 024665          221 VA-----QPDQVCFLCLILFQPI  238 (264)
Q Consensus       221 ~p-----~~~~~~~~~~~~l~~~  238 (264)
                      ..     .+..........++|+
T Consensus       125 ~~l~~~~d~~~~l~~~~~~Lkpg  147 (279)
T 3ccf_A          125 AMLHWVKEPEAAIASIHQALKSG  147 (279)
T ss_dssp             SCGGGCSCHHHHHHHHHHHEEEE
T ss_pred             chhhhCcCHHHHHHHHHHhcCCC
Confidence            65     3444455555666665

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.05  E-value=5.9e-10  Score=99.41  Aligned_cols=87  Identities=15%  Similarity=0.158  Sum_probs=64.0

Q ss_pred             HHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc--CCCeEEEEcCCCCch
Q 024665          128 LAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--RTNVIPIIEDARHPA  205 (264)
Q Consensus       128 l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~--~~nV~~i~~D~~~~~  205 (264)
                      ++..++..+.   +.++++|||+|||+|.++..+++.   ..+|++||+|+.+++.+.+....  ..|++++++|+.+.+
T Consensus        30 i~~~i~~~~~---~~~~~~VLDiG~G~G~lt~~La~~---~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~  103 (299)
T 2h1r_A           30 ILDKIIYAAK---IKSSDIVLEIGCGTGNLTVKLLPL---AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTV  103 (299)
T ss_dssp             HHHHHHHHHC---CCTTCEEEEECCTTSTTHHHHTTT---SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSC
T ss_pred             HHHHHHHhcC---CCCcCEEEEEcCcCcHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCC
Confidence            4444544444   788999999999999999999976   35899999999887766655432  258999999998754


Q ss_pred             hhcccCCCccEEEEcCCCch
Q 024665          206 KYRMLVGMVDVIFSDVAQPD  225 (264)
Q Consensus       206 ~~~~~~~~fD~V~~d~p~~~  225 (264)
                           ..+||+|++|+|..+
T Consensus       104 -----~~~~D~Vv~n~py~~  118 (299)
T 2h1r_A          104 -----FPKFDVCTANIPYKI  118 (299)
T ss_dssp             -----CCCCSEEEEECCGGG
T ss_pred             -----cccCCEEEEcCCccc
Confidence                 248999999999543

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.05  E-value=4.6e-10  Score=103.09  Aligned_cols=90  Identities=20%  Similarity=0.139  Sum_probs=70.1

Q ss_pred             chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCC
Q 024665          125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDA  201 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~  201 (264)
                      ...+++.++...    ++++.+|||+|||+|++++.+|... +.++|+++|+|+.+++.+.+++...   .+|+++++|+
T Consensus       203 ~~~la~~l~~~~----~~~~~~vLD~gCGsG~~~i~~a~~~-~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~  277 (373)
T 3tm4_A          203 KASIANAMIELA----ELDGGSVLDPMCGSGTILIELALRR-YSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDA  277 (373)
T ss_dssp             CHHHHHHHHHHH----TCCSCCEEETTCTTCHHHHHHHHTT-CCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCG
T ss_pred             cHHHHHHHHHhh----cCCCCEEEEccCcCcHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECCh
Confidence            456666665332    6788999999999999999999873 4458999999998876655554433   3899999999


Q ss_pred             CCchhhcccCCCccEEEEcCC
Q 024665          202 RHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       202 ~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      .+++.   ..++||+|++|+|
T Consensus       278 ~~~~~---~~~~fD~Ii~npP  295 (373)
T 3tm4_A          278 TQLSQ---YVDSVDFAISNLP  295 (373)
T ss_dssp             GGGGG---TCSCEEEEEEECC
T ss_pred             hhCCc---ccCCcCEEEECCC
Confidence            98652   3468999999999

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.05  E-value=1.3e-09  Score=94.89  Aligned_cols=95  Identities=19%  Similarity=0.210  Sum_probs=71.7

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      .+.++.+|||+|||+|.++..+++. .+..+|+++|+|+.+++.+.+.....  .|+++++.|+.+++   ...++||+|
T Consensus        34 ~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD~v  109 (276)
T 3mgg_A           34 VYPPGAKVLEAGCGIGAQTVILAKN-NPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLP---FEDSSFDHI  109 (276)
T ss_dssp             CCCTTCEEEETTCTTSHHHHHHHHH-CTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCC---SCTTCEEEE
T ss_pred             cCCCCCeEEEecCCCCHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCC---CCCCCeeEE
Confidence            4788999999999999999999988 45679999999998876655554332  48999999998754   235789999


Q ss_pred             EEcCC-----CchHHHHHHHHHhCCC
Q 024665          218 FSDVA-----QPDQVCFLCLILFQPI  238 (264)
Q Consensus       218 ~~d~p-----~~~~~~~~~~~~l~~~  238 (264)
                      +++..     .+..........++|+
T Consensus       110 ~~~~~l~~~~~~~~~l~~~~~~L~pg  135 (276)
T 3mgg_A          110 FVCFVLEHLQSPEEALKSLKKVLKPG  135 (276)
T ss_dssp             EEESCGGGCSCHHHHHHHHHHHEEEE
T ss_pred             EEechhhhcCCHHHHHHHHHHHcCCC
Confidence            98754     3444444455555554

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.04  E-value=1.7e-09  Score=93.75  Aligned_cols=87  Identities=16%  Similarity=0.158  Sum_probs=66.1

Q ss_pred             HHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCc
Q 024665          128 LAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHP  204 (264)
Q Consensus       128 l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~  204 (264)
                      +...++..+   .++++.+|||+|||+|.++..+++..  ..+|+++|+|+.+++.+.+....   ..++++++.|+.+.
T Consensus        49 ~~~~l~~~~---~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  123 (273)
T 3bus_A           49 LTDEMIALL---DVRSGDRVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDL  123 (273)
T ss_dssp             HHHHHHHHS---CCCTTCEEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred             HHHHHHHhc---CCCCCCEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccC
Confidence            344444333   47899999999999999999999874  46999999998886655554432   24799999999885


Q ss_pred             hhhcccCCCccEEEEcCC
Q 024665          205 AKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       205 ~~~~~~~~~fD~V~~d~p  222 (264)
                      +   ...++||+|++...
T Consensus       124 ~---~~~~~fD~v~~~~~  138 (273)
T 3bus_A          124 P---FEDASFDAVWALES  138 (273)
T ss_dssp             C---SCTTCEEEEEEESC
T ss_pred             C---CCCCCccEEEEech
Confidence            4   23468999998654

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.04  E-value=4.3e-10  Score=104.16  Aligned_cols=78  Identities=21%  Similarity=0.138  Sum_probs=58.8

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC-CeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT-NVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~-nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      ++++++|||+|||+|.+++++|.. +  ..|++||+|+.+++.+.+++..+. ...++++|+.+....  ..+.||+|++
T Consensus       212 ~~~g~~VLDlg~GtG~~sl~~a~~-g--a~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~--~~~~fD~Ii~  286 (393)
T 4dmg_A          212 VRPGERVLDVYSYVGGFALRAARK-G--AYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRG--LEGPFHHVLL  286 (393)
T ss_dssp             CCTTCEEEEESCTTTHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHT--CCCCEEEEEE
T ss_pred             hcCCCeEEEcccchhHHHHHHHHc-C--CeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHH--hcCCCCEEEE
Confidence            457999999999999999999986 2  359999999988765555443321 345679998876432  2345999999


Q ss_pred             cCCC
Q 024665          220 DVAQ  223 (264)
Q Consensus       220 d~p~  223 (264)
                      |+|.
T Consensus       287 dpP~  290 (393)
T 4dmg_A          287 DPPT  290 (393)
T ss_dssp             CCCC
T ss_pred             CCCc
Confidence            9994

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.04  E-value=7.3e-11  Score=98.17  Aligned_cols=95  Identities=18%  Similarity=0.052  Sum_probs=58.4

Q ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC-CeEEEEcCCCCc
Q 024665          126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT-NVIPIIEDARHP  204 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~-nV~~i~~D~~~~  204 (264)
                      ..++..++..+.  ...++.+|||+|||+|.++..++... +..+|+++|+|+.+++.+.+...... +++++++|+.++
T Consensus        15 ~~~~~~~~~~l~--~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~   91 (215)
T 4dzr_A           15 EVLVEEAIRFLK--RMPSGTRVIDVGTGSGCIAVSIALAC-PGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEW   91 (215)
T ss_dssp             HHHHHHHHHHHT--TCCTTEEEEEEESSBCHHHHHHHHHC-TTEEEEEEECC-------------------CCHHHHHHH
T ss_pred             HHHHHHHHHHhh--hcCCCCEEEEecCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhh
Confidence            445555555444  23788999999999999999999984 56799999999877654444333222 788999998873


Q ss_pred             hhh-cccCCCccEEEEcCCC
Q 024665          205 AKY-RMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       205 ~~~-~~~~~~fD~V~~d~p~  223 (264)
                      ... ....++||+|++|+|.
T Consensus        92 ~~~~~~~~~~fD~i~~npp~  111 (215)
T 4dzr_A           92 LIERAERGRPWHAIVSNPPY  111 (215)
T ss_dssp             HHHHHHTTCCBSEEEECCCC
T ss_pred             hhhhhhccCcccEEEECCCC
Confidence            320 0113789999999984

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.04  E-value=1.8e-09  Score=93.81  Aligned_cols=82  Identities=16%  Similarity=0.208  Sum_probs=61.9

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChH------HHHHHHHHhhcC---CCeEEEEcC-CCCchhhcc
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHR------SGRDLVNMAKKR---TNVIPIIED-ARHPAKYRM  209 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~------~~~~l~~~a~~~---~nV~~i~~D-~~~~~~~~~  209 (264)
                      .++++++|||+|||+|.++..+++..++..+|+++|+|+.      +++.+.+.....   .+|++++.| ..... ...
T Consensus        40 ~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~  118 (275)
T 3bkx_A           40 QVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDL-GPI  118 (275)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCC-GGG
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhcc-CCC
Confidence            4889999999999999999999999877689999999975      555544444332   479999998 32211 012


Q ss_pred             cCCCccEEEEcCC
Q 024665          210 LVGMVDVIFSDVA  222 (264)
Q Consensus       210 ~~~~fD~V~~d~p  222 (264)
                      ..++||+|++...
T Consensus       119 ~~~~fD~v~~~~~  131 (275)
T 3bkx_A          119 ADQHFDRVVLAHS  131 (275)
T ss_dssp             TTCCCSEEEEESC
T ss_pred             CCCCEEEEEEccc
Confidence            3468999998765

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.03  E-value=1.6e-09  Score=91.73  Aligned_cols=89  Identities=19%  Similarity=0.211  Sum_probs=68.7

Q ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCch
Q 024665          126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPA  205 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~  205 (264)
                      +.+...++..+.   ++++.+|||+|||+|.++..++...   .+|+++|+++.+++.+.+......++++++.|+.+..
T Consensus        56 ~~~~~~~~~~~~---~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~  129 (231)
T 1vbf_A           56 LNLGIFMLDELD---LHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGY  129 (231)
T ss_dssp             HHHHHHHHHHTT---CCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCC
T ss_pred             HHHHHHHHHhcC---CCCCCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCccccc
Confidence            345555554444   7899999999999999999999984   5999999999887666655543348999999998732


Q ss_pred             hhcccCCCccEEEEcCCC
Q 024665          206 KYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       206 ~~~~~~~~fD~V~~d~p~  223 (264)
                      .   ..++||+|+++.+.
T Consensus       130 ~---~~~~fD~v~~~~~~  144 (231)
T 1vbf_A          130 E---EEKPYDRVVVWATA  144 (231)
T ss_dssp             G---GGCCEEEEEESSBB
T ss_pred             c---cCCCccEEEECCcH
Confidence            1   23689999998763

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.03  E-value=1.5e-09  Score=93.16  Aligned_cols=75  Identities=17%  Similarity=0.099  Sum_probs=60.1

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC-CCeEEEEcCCCCchhhcccCCCccEEE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIF  218 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~-~nV~~i~~D~~~~~~~~~~~~~fD~V~  218 (264)
                      ..+++.+|||+|||+|.++..+++.   ..+|+++|+|+.+++.+.+..... .++++++.|+.+.+    ..++||+|+
T Consensus        38 ~~~~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~----~~~~fD~v~  110 (252)
T 1wzn_A           38 AKREVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIA----FKNEFDAVT  110 (252)
T ss_dssp             CSSCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCC----CCSCEEEEE
T ss_pred             cccCCCEEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcc----cCCCccEEE
Confidence            3567889999999999999999986   358999999998876666555433 37999999998754    236899999


Q ss_pred             EcC
Q 024665          219 SDV  221 (264)
Q Consensus       219 ~d~  221 (264)
                      +..
T Consensus       111 ~~~  113 (252)
T 1wzn_A          111 MFF  113 (252)
T ss_dssp             ECS
T ss_pred             EcC
Confidence            753

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.02  E-value=2e-09  Score=90.50  Aligned_cols=76  Identities=26%  Similarity=0.194  Sum_probs=60.6

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC-CCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~-~nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      ++++.+|||+|||+|.++..++... +  +|+++|+|+.+++.+.+..... .++++++.|+.+.+   ...++||+|++
T Consensus        36 ~~~~~~vLDlG~G~G~~~~~l~~~~-~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v~~  109 (227)
T 1ve3_A           36 MKKRGKVLDLACGVGGFSFLLEDYG-F--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLS---FEDKTFDYVIF  109 (227)
T ss_dssp             CCSCCEEEEETCTTSHHHHHHHHTT-C--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCC---SCTTCEEEEEE
T ss_pred             cCCCCeEEEEeccCCHHHHHHHHcC-C--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCC---CCCCcEEEEEE
Confidence            4568899999999999999999873 2  8999999998876655554333 58999999998754   23468999999


Q ss_pred             cCC
Q 024665          220 DVA  222 (264)
Q Consensus       220 d~p  222 (264)
                      +.+
T Consensus       110 ~~~  112 (227)
T 1ve3_A          110 IDS  112 (227)
T ss_dssp             ESC
T ss_pred             cCc
Confidence            876

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.02  E-value=6.2e-10  Score=95.25  Aligned_cols=109  Identities=17%  Similarity=0.080  Sum_probs=74.3

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCC-hHHHHHH---HHHhhc--CCCeEEEEcCCCCchhhcccCCCc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFS-HRSGRDL---VNMAKK--RTNVIPIIEDARHPAKYRMLVGMV  214 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s-~~~~~~l---~~~a~~--~~nV~~i~~D~~~~~~~~~~~~~f  214 (264)
                      .+++++|||+|||+|.++..+|.. .+..+|++||+| +.|++.+   .+.+..  ..||.++++|+.+++..  ....+
T Consensus        22 ~~~~~~vLDiGCG~G~~~~~la~~-~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~--~~d~v   98 (225)
T 3p2e_A           22 GQFDRVHIDLGTGDGRNIYKLAIN-DQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFE--LKNIA   98 (225)
T ss_dssp             TTCSEEEEEETCTTSHHHHHHHHT-CTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGG--GTTCE
T ss_pred             CCCCCEEEEEeccCcHHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhh--ccCeE
Confidence            578899999999999999999975 357789999999 6553332   222222  23899999999987531  23678


Q ss_pred             cEEEEcCCCchHHHHHHHHHhCCCcHHHHHHHHHHhh-cchhhh
Q 024665          215 DVIFSDVAQPDQVCFLCLILFQPIVINNLQSVNNETK-GGIFEF  257 (264)
Q Consensus       215 D~V~~d~p~~~~~~~~~~~~l~~~~~~~l~~~~~~Lk-~g~f~~  257 (264)
                      |.|+++.|.+..     ...........+.++.+.|+ +|.+.+
T Consensus        99 ~~i~~~~~~~~~-----~~~~~~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A           99 DSISILFPWGTL-----LEYVIKPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             EEEEEESCCHHH-----HHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred             EEEEEeCCCcHH-----hhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence            999998875542     11111123345667777777 666655

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=99.02  E-value=1.2e-09  Score=96.72  Aligned_cols=92  Identities=15%  Similarity=0.086  Sum_probs=68.4

Q ss_pred             HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCC-CCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCch
Q 024665          127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPA  205 (264)
Q Consensus       127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~-~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~  205 (264)
                      .++..|+..+.   +.++++|||+|||+|.+|..|++.... .++|++||+|+++++.+.+..  ..|++++++|+.+++
T Consensus        29 ~i~~~iv~~~~---~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~--~~~v~~i~~D~~~~~  103 (279)
T 3uzu_A           29 GVIDAIVAAIR---PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF--GELLELHAGDALTFD  103 (279)
T ss_dssp             HHHHHHHHHHC---CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH--GGGEEEEESCGGGCC
T ss_pred             HHHHHHHHhcC---CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc--CCCcEEEECChhcCC
Confidence            44555554444   889999999999999999999998653 255999999999977766653  458999999998864


Q ss_pred             hhcccC-C--CccEEEEcCCC
Q 024665          206 KYRMLV-G--MVDVIFSDVAQ  223 (264)
Q Consensus       206 ~~~~~~-~--~fD~V~~d~p~  223 (264)
                      ...... .  ..+.|++|+|.
T Consensus       104 ~~~~~~~~~~~~~~vv~NlPY  124 (279)
T 3uzu_A          104 FGSIARPGDEPSLRIIGNLPY  124 (279)
T ss_dssp             GGGGSCSSSSCCEEEEEECCH
T ss_pred             hhHhcccccCCceEEEEccCc
Confidence            211111 1  34689999993

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.02  E-value=1e-09  Score=93.83  Aligned_cols=79  Identities=13%  Similarity=0.112  Sum_probs=61.2

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc--CCCccEE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML--VGMVDVI  217 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~--~~~fD~V  217 (264)
                      .++++.+|||+|||+|.++..+++...   +|+++|+|+.+++.+.+.. ...|+++++.|+.++......  ...||+|
T Consensus        53 ~~~~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v  128 (245)
T 3ggd_A           53 LFNPELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKEN-TAANISYRLLDGLVPEQAAQIHSEIGDANI  128 (245)
T ss_dssp             TSCTTSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHS-CCTTEEEEECCTTCHHHHHHHHHHHCSCEE
T ss_pred             ccCCCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhC-cccCceEEECcccccccccccccccCccEE
Confidence            367889999999999999999999843   7999999998876655544 334899999999986532111  1258999


Q ss_pred             EEcCC
Q 024665          218 FSDVA  222 (264)
Q Consensus       218 ~~d~p  222 (264)
                      +++..
T Consensus       129 ~~~~~  133 (245)
T 3ggd_A          129 YMRTG  133 (245)
T ss_dssp             EEESS
T ss_pred             EEcch
Confidence            98865

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.02  E-value=1.3e-09  Score=96.48  Aligned_cols=44  Identities=18%  Similarity=0.172  Sum_probs=37.4

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHH
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN  186 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~  186 (264)
                      .++.+|||||||+|.+++.|+..+. ..+|++||+|+.+++.+.+
T Consensus        45 ~~~~~VLDiGCG~G~~~~~la~~~~-~~~v~gvDis~~~i~~A~~   88 (292)
T 3g07_A           45 FRGRDVLDLGCNVGHLTLSIACKWG-PSRMVGLDIDSRLIHSARQ   88 (292)
T ss_dssp             TTTSEEEEESCTTCHHHHHHHHHTC-CSEEEEEESCHHHHHHHHH
T ss_pred             cCCCcEEEeCCCCCHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH
Confidence            4688999999999999999999874 4599999999988655544

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.01  E-value=1.1e-09  Score=99.18  Aligned_cols=79  Identities=18%  Similarity=0.032  Sum_probs=60.4

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---CC-CeEEEEcCCCCchhh-cccCCCcc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RT-NVIPIIEDARHPAKY-RMLVGMVD  215 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~~-nV~~i~~D~~~~~~~-~~~~~~fD  215 (264)
                      ..++.+|||+|||+|.+++.++..  .. +|++||+|+.+++.+.+++..   .. +++++++|+.++... ....++||
T Consensus       151 ~~~~~~VLDlgcGtG~~sl~la~~--ga-~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD  227 (332)
T 2igt_A          151 ADRPLKVLNLFGYTGVASLVAAAA--GA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYD  227 (332)
T ss_dssp             SSSCCEEEEETCTTCHHHHHHHHT--TC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBS
T ss_pred             cCCCCcEEEcccccCHHHHHHHHc--CC-EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCce
Confidence            356789999999999999999985  23 999999999886655554432   22 499999999876431 01136899


Q ss_pred             EEEEcCC
Q 024665          216 VIFSDVA  222 (264)
Q Consensus       216 ~V~~d~p  222 (264)
                      +|++|+|
T Consensus       228 ~Ii~dPP  234 (332)
T 2igt_A          228 IILTDPP  234 (332)
T ss_dssp             EEEECCC
T ss_pred             EEEECCc
Confidence            9999999

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.01  E-value=3e-09  Score=88.70  Aligned_cols=74  Identities=19%  Similarity=-0.005  Sum_probs=59.5

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      .+.++.+|||+|||+|.++..++..   ..+|+++|+|+.+++.+.+  ....++++++.|+.++.    ..++||+|++
T Consensus        43 ~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~--~~~~~~~~~~~d~~~~~----~~~~~D~v~~  113 (218)
T 3ou2_A           43 AGNIRGDVLELASGTGYWTRHLSGL---ADRVTALDGSAEMIAEAGR--HGLDNVEFRQQDLFDWT----PDRQWDAVFF  113 (218)
T ss_dssp             TTTSCSEEEEESCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHGG--GCCTTEEEEECCTTSCC----CSSCEEEEEE
T ss_pred             cCCCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHh--cCCCCeEEEecccccCC----CCCceeEEEE
Confidence            3678889999999999999999988   3489999999977544433  22258999999998862    3578999998


Q ss_pred             cCC
Q 024665          220 DVA  222 (264)
Q Consensus       220 d~p  222 (264)
                      ...
T Consensus       114 ~~~  116 (218)
T 3ou2_A          114 AHW  116 (218)
T ss_dssp             ESC
T ss_pred             ech
Confidence            755

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.01  E-value=4.2e-09  Score=93.71  Aligned_cols=92  Identities=20%  Similarity=0.183  Sum_probs=70.1

Q ss_pred             cCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCCCchhhcccCCCcc
Q 024665          139 IWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVD  215 (264)
Q Consensus       139 ~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~~~~~~~~~~~~fD  215 (264)
                      +.++++.+|||+|||+|.++..+++..+  .+|+++|+|+.+++.+.+.....   .++++++.|+.+++      ++||
T Consensus        86 ~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~fD  157 (318)
T 2fk8_A           86 LDLKPGMTLLDIGCGWGTTMRRAVERFD--VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA------EPVD  157 (318)
T ss_dssp             SCCCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC------CCCS
T ss_pred             cCCCCcCEEEEEcccchHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC------CCcC
Confidence            3488999999999999999999998863  48999999998876665554432   47999999987642      6899


Q ss_pred             EEEEcCC-------CchHHHHHHHHHhCCC
Q 024665          216 VIFSDVA-------QPDQVCFLCLILFQPI  238 (264)
Q Consensus       216 ~V~~d~p-------~~~~~~~~~~~~l~~~  238 (264)
                      +|++...       .+..........++|+
T Consensus       158 ~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg  187 (318)
T 2fk8_A          158 RIVSIEAFEHFGHENYDDFFKRCFNIMPAD  187 (318)
T ss_dssp             EEEEESCGGGTCGGGHHHHHHHHHHHSCTT
T ss_pred             EEEEeChHHhcCHHHHHHHHHHHHHhcCCC
Confidence            9998743       2334445555667776

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.00  E-value=1.5e-09  Score=91.14  Aligned_cols=89  Identities=17%  Similarity=0.047  Sum_probs=67.8

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      ++++.+|||+|||+|.++..+++.   ..+|+++|+|+.+++.+.+...  .++++++.|+.+.+.   . ++||+|+++
T Consensus        43 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~--~~~~~~~~d~~~~~~---~-~~fD~v~~~  113 (220)
T 3hnr_A           43 NKSFGNVLEFGVGTGNLTNKLLLA---GRTVYGIEPSREMRMIAKEKLP--KEFSITEGDFLSFEV---P-TSIDTIVST  113 (220)
T ss_dssp             HTCCSEEEEECCTTSHHHHHHHHT---TCEEEEECSCHHHHHHHHHHSC--TTCCEESCCSSSCCC---C-SCCSEEEEE
T ss_pred             ccCCCeEEEeCCCCCHHHHHHHhC---CCeEEEEeCCHHHHHHHHHhCC--CceEEEeCChhhcCC---C-CCeEEEEEC
Confidence            568899999999999999999986   3589999999988655544433  589999999988652   2 799999998


Q ss_pred             CC-----CchH--HHHHHHHHhCCC
Q 024665          221 VA-----QPDQ--VCFLCLILFQPI  238 (264)
Q Consensus       221 ~p-----~~~~--~~~~~~~~l~~~  238 (264)
                      ..     .++.  ........++|+
T Consensus       114 ~~l~~~~~~~~~~~l~~~~~~Lkpg  138 (220)
T 3hnr_A          114 YAFHHLTDDEKNVAIAKYSQLLNKG  138 (220)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHSCTT
T ss_pred             cchhcCChHHHHHHHHHHHHhcCCC
Confidence            66     2222  444455666665

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.00  E-value=1.2e-09  Score=93.58  Aligned_cols=78  Identities=12%  Similarity=-0.020  Sum_probs=63.1

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      ...++.+|||+|||+|.++..+++..  ..+|+++|+|+.+++.+.+......++++++.|+.+.+   ...++||+|++
T Consensus        90 ~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~---~~~~~fD~v~~  164 (254)
T 1xtp_A           90 PGHGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETAT---LPPNTYDLIVI  164 (254)
T ss_dssp             TTCCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCC---CCSSCEEEEEE
T ss_pred             cccCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCC---CCCCCeEEEEE
Confidence            46788999999999999999999885  45899999999887666665544468999999998754   23468999998


Q ss_pred             cCC
Q 024665          220 DVA  222 (264)
Q Consensus       220 d~p  222 (264)
                      ...
T Consensus       165 ~~~  167 (254)
T 1xtp_A          165 QWT  167 (254)
T ss_dssp             ESC
T ss_pred             cch
Confidence            755

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.00  E-value=1.1e-09  Score=101.03  Aligned_cols=102  Identities=20%  Similarity=0.104  Sum_probs=76.1

Q ss_pred             eecceE---eCCcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCC------------------------
Q 024665          115 KVEYRI---WNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGP------------------------  167 (264)
Q Consensus       115 ~~~yr~---~~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~------------------------  167 (264)
                      +..|+.   --|....+++.++....   ++++..|||++||||++++.+|.....                        
T Consensus       167 krgyr~~~~~Apl~e~lAa~ll~~~~---~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~  243 (385)
T 3ldu_A          167 KRGYREKANKAPIRETLAAGLIYLTP---WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWD  243 (385)
T ss_dssp             CCSCCCC--CCCCCHHHHHHHHHTSC---CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHH
T ss_pred             hcccccCCCCCCCcHHHHHHHHHhhC---CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHH
Confidence            345554   23445678887775544   788999999999999999999987521                        


Q ss_pred             -------------CCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcccCCCccEEEEcCCC
Q 024665          168 -------------NGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       168 -------------~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~  223 (264)
                                   ..+|+++|+|+.+++.+.+++..   ..+|++++.|+.++..    ..+||+|++|||.
T Consensus       244 ~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~----~~~~D~Iv~NPPy  311 (385)
T 3ldu_A          244 VRKDAFNKIDNESKFKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKS----EDEFGFIITNPPY  311 (385)
T ss_dssp             HHHHHHHHSCCSCCCCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCC----SCBSCEEEECCCC
T ss_pred             HHHHHHHHhhccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCc----CCCCcEEEECCCC
Confidence                         25799999999886555544432   2379999999988652    3589999999994

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.00  E-value=5.9e-10  Score=110.37  Aligned_cols=78  Identities=17%  Similarity=0.028  Sum_probs=62.0

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---C-CCeEEEEcCCCCchhhcccCCCccEE
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---R-TNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~-~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      .++.+|||+|||+|.++++++..  ...+|++||+|+.+++.+.+++..   . .+++++++|+.+..+.  ..++||+|
T Consensus       538 ~~g~~VLDlg~GtG~~sl~aa~~--ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~--~~~~fD~I  613 (703)
T 3v97_A          538 SKGKDFLNLFSYTGSATVHAGLG--GARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLRE--ANEQFDLI  613 (703)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHH--CCCCEEEE
T ss_pred             cCCCcEEEeeechhHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHh--cCCCccEE
Confidence            47899999999999999999974  456899999998886555544433   2 3799999999885432  34689999


Q ss_pred             EEcCCC
Q 024665          218 FSDVAQ  223 (264)
Q Consensus       218 ~~d~p~  223 (264)
                      ++|+|.
T Consensus       614 i~DPP~  619 (703)
T 3v97_A          614 FIDPPT  619 (703)
T ss_dssp             EECCCS
T ss_pred             EECCcc
Confidence            999994

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.00  E-value=1.6e-09  Score=91.93  Aligned_cols=94  Identities=19%  Similarity=0.238  Sum_probs=68.6

Q ss_pred             HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCC-----CCEEEEEeCChHHHHHHHHHhhc-------CCCe
Q 024665          127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGP-----NGVVYAVEFSHRSGRDLVNMAKK-------RTNV  194 (264)
Q Consensus       127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~-----~g~V~avD~s~~~~~~l~~~a~~-------~~nV  194 (264)
                      .+.+.++..+.. .++++.+|||+|||+|.++..+++.++.     .++|+++|+++.+++.+.+....       ..|+
T Consensus        69 ~~~~~~~~~l~~-~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v  147 (227)
T 1r18_A           69 HMHAFALEYLRD-HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQL  147 (227)
T ss_dssp             HHHHHHHHHTTT-TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSE
T ss_pred             HHHHHHHHHHHh-hCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCce
Confidence            344444444421 3788999999999999999999997653     36999999998886555544332       3589


Q ss_pred             EEEEcCCCCchhhcccCCCccEEEEcCCCc
Q 024665          195 IPIIEDARHPAKYRMLVGMVDVIFSDVAQP  224 (264)
Q Consensus       195 ~~i~~D~~~~~~~~~~~~~fD~V~~d~p~~  224 (264)
                      ++++.|+.+..+   ...+||+|+++.+.+
T Consensus       148 ~~~~~d~~~~~~---~~~~fD~I~~~~~~~  174 (227)
T 1r18_A          148 LIVEGDGRKGYP---PNAPYNAIHVGAAAP  174 (227)
T ss_dssp             EEEESCGGGCCG---GGCSEEEEEECSCBS
T ss_pred             EEEECCcccCCC---cCCCccEEEECCchH
Confidence            999999987321   136899999987743

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.00  E-value=1.6e-09  Score=92.03  Aligned_cols=75  Identities=16%  Similarity=0.089  Sum_probs=59.6

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      ++++.+|||+|||+|.++..+++.   ..+|+++|+|+.+++.+.+.. ...++++++.|+.+.+   ...++||+|++.
T Consensus        51 ~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~d~~~~~---~~~~~fD~v~~~  123 (242)
T 3l8d_A           51 VKKEAEVLDVGCGDGYGTYKLSRT---GYKAVGVDISEVMIQKGKERG-EGPDLSFIKGDLSSLP---FENEQFEAIMAI  123 (242)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHTTT-CBTTEEEEECBTTBCS---SCTTCEEEEEEE
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhc-ccCCceEEEcchhcCC---CCCCCccEEEEc
Confidence            568899999999999999999987   348999999997764443332 2358999999998764   235789999986


Q ss_pred             CC
Q 024665          221 VA  222 (264)
Q Consensus       221 ~p  222 (264)
                      ..
T Consensus       124 ~~  125 (242)
T 3l8d_A          124 NS  125 (242)
T ss_dssp             SC
T ss_pred             Ch
Confidence            54

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.00  E-value=1.8e-09  Score=96.65  Aligned_cols=81  Identities=17%  Similarity=0.156  Sum_probs=61.7

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc------CCCeEEEEcCCCCchhhcccCCCc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK------RTNVIPIIEDARHPAKYRMLVGMV  214 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~------~~nV~~i~~D~~~~~~~~~~~~~f  214 (264)
                      ..+..+|||||||+|.++..+++.. +..+|++||+++.+++.+.+....      .++++++++|+.+..+  ...++|
T Consensus        93 ~~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~--~~~~~f  169 (304)
T 2o07_A           93 HPNPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMK--QNQDAF  169 (304)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHH--TCSSCE
T ss_pred             CCCCCEEEEECCCchHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHh--hCCCCc
Confidence            3456899999999999999999763 457999999999887655544321      4589999999977432  134689


Q ss_pred             cEEEEcCCCc
Q 024665          215 DVIFSDVAQP  224 (264)
Q Consensus       215 D~V~~d~p~~  224 (264)
                      |+|++|++.+
T Consensus       170 D~Ii~d~~~~  179 (304)
T 2o07_A          170 DVIITDSSDP  179 (304)
T ss_dssp             EEEEEECC--
T ss_pred             eEEEECCCCC
Confidence            9999998854

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.99  E-value=2.3e-10  Score=101.13  Aligned_cols=86  Identities=17%  Similarity=0.074  Sum_probs=60.5

Q ss_pred             chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC------CeEEE-
Q 024665          125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT------NVIPI-  197 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~------nV~~i-  197 (264)
                      .+..+..+...++...++++.+|||||||+|.++..+++.    ++|+|||+++ ++..+.+ . ...      ||+++ 
T Consensus        64 ~sR~a~KL~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~-m~~~a~~-~-~~~~~~~~~~v~~~~  136 (276)
T 2wa2_A           64 VSRGTAKLAWIDERGGVELKGTVVDLGCGRGSWSYYAASQ----PNVREVKAYT-LGTSGHE-K-PRLVETFGWNLITFK  136 (276)
T ss_dssp             -CHHHHHHHHHHHTTSCCCCEEEEEESCTTCHHHHHHHTS----TTEEEEEEEC-CCCTTSC-C-CCCCCCTTGGGEEEE
T ss_pred             CchHHHHHHHHHHcCCCCCCCEEEEeccCCCHHHHHHHHc----CCEEEEECch-hhhhhhh-c-hhhhhhcCCCeEEEe
Confidence            4444444443334445789999999999999999999986    4799999998 4211100 1 111      78999 


Q ss_pred             -EcCCCCchhhcccCCCccEEEEcCC
Q 024665          198 -IEDARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       198 -~~D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                       ++|+++++     .++||+|++|++
T Consensus       137 ~~~D~~~l~-----~~~fD~Vvsd~~  157 (276)
T 2wa2_A          137 SKVDVTKME-----PFQADTVLCDIG  157 (276)
T ss_dssp             CSCCGGGCC-----CCCCSEEEECCC
T ss_pred             ccCcHhhCC-----CCCcCEEEECCC
Confidence             89988753     368999999976

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=98.99  E-value=1.9e-09  Score=88.64  Aligned_cols=75  Identities=17%  Similarity=0.122  Sum_probs=60.0

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIF  218 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~  218 (264)
                      ..++.+|||+|||+|.++..+++.   ..+|+++|+|+.+++.+.+.....  .++++++.|+.+.+   . .++||+|+
T Consensus        30 ~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~---~-~~~~D~v~  102 (199)
T 2xvm_A           30 VVKPGKTLDLGCGNGRNSLYLAAN---GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLT---F-DRQYDFIL  102 (199)
T ss_dssp             TSCSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCC---C-CCCEEEEE
T ss_pred             ccCCCeEEEEcCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCC---C-CCCceEEE
Confidence            557789999999999999999987   348999999998876655544322  37999999998754   2 57899999


Q ss_pred             EcCC
Q 024665          219 SDVA  222 (264)
Q Consensus       219 ~d~p  222 (264)
                      +..+
T Consensus       103 ~~~~  106 (199)
T 2xvm_A          103 STVV  106 (199)
T ss_dssp             EESC
T ss_pred             Ecch
Confidence            8765

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=98.99  E-value=6.9e-09  Score=90.81  Aligned_cols=92  Identities=17%  Similarity=0.158  Sum_probs=69.5

Q ss_pred             cCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcccCCCcc
Q 024665          139 IWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVD  215 (264)
Q Consensus       139 ~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~~~~fD  215 (264)
                      +.++++.+|||+|||+|.++..+++..+  .+|+++|+|+.+++.+.+....   ..++++++.|+.+++      ++||
T Consensus        60 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~------~~fD  131 (287)
T 1kpg_A           60 LGLQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD------EPVD  131 (287)
T ss_dssp             TTCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC------CCCS
T ss_pred             cCCCCcCEEEEECCcccHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC------CCee
Confidence            3488999999999999999999997654  3999999999887665555443   248999999986542      7899


Q ss_pred             EEEEcCC-------CchHHHHHHHHHhCCC
Q 024665          216 VIFSDVA-------QPDQVCFLCLILFQPI  238 (264)
Q Consensus       216 ~V~~d~p-------~~~~~~~~~~~~l~~~  238 (264)
                      +|++...       .+..........++|+
T Consensus       132 ~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg  161 (287)
T 1kpg_A          132 RIVSIGAFEHFGHERYDAFFSLAHRLLPAD  161 (287)
T ss_dssp             EEEEESCGGGTCTTTHHHHHHHHHHHSCTT
T ss_pred             EEEEeCchhhcChHHHHHHHHHHHHhcCCC
Confidence            9998743       2334455556667776

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=98.99  E-value=1.2e-09  Score=100.55  Aligned_cols=76  Identities=26%  Similarity=0.274  Sum_probs=59.6

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCCh--HHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSH--RSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIF  218 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~--~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~  218 (264)
                      +.++++|||||||+|.+++.+|+.  .+.+|||||.|+  ..++++++.|....+|+++++|++++.    +.++||+|+
T Consensus        81 ~~~~k~VLDvG~GtGiLs~~Aa~a--GA~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~----lpe~~Dviv  154 (376)
T 4hc4_A           81 ALRGKTVLDVGAGTGILSIFCAQA--GARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVE----LPEQVDAIV  154 (376)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCC----CSSCEEEEE
T ss_pred             hcCCCEEEEeCCCccHHHHHHHHh--CCCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeec----CCccccEEE
Confidence            457899999999999999888865  456999999995  224444555555568999999998875    457999999


Q ss_pred             EcCC
Q 024665          219 SDVA  222 (264)
Q Consensus       219 ~d~p  222 (264)
                      +...
T Consensus       155 sE~~  158 (376)
T 4hc4_A          155 SEWM  158 (376)
T ss_dssp             CCCC
T ss_pred             eecc
Confidence            8654

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.99  E-value=1.1e-09  Score=97.40  Aligned_cols=112  Identities=14%  Similarity=0.145  Sum_probs=69.9

Q ss_pred             CCceeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCC-CCCEEEEEcccCChHHHHHHHHhCCCCEEEEE
Q 024665           96 AGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIK-PGARVLYLGAASGTTVSHVSDIVGPNGVVYAV  174 (264)
Q Consensus        96 ~g~~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~-~g~~VLDlG~G~G~~s~~la~~~~~~g~V~av  174 (264)
                      |+..+.....+.+..+   .      .+|.|.-...+...|+.+.+. ++.+|||+|||||.+|..|++.  +..+||||
T Consensus        46 p~~~V~~~d~I~v~g~---~------~~yvsrg~~Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~--ga~~V~aV  114 (291)
T 3hp7_A           46 PGEKIDDGTELKLKGE---K------LRYVSRGGLKLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQN--GAKLVYAV  114 (291)
T ss_dssp             TTCEEETTCCEEETTC---C------CCSSSTTHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT--TCSEEEEE
T ss_pred             CCCCCCCCCEEEEccc---c------cccccchHHHHHHHHHhcCCCccccEEEecCCCccHHHHHHHhC--CCCEEEEE
Confidence            5555555556666543   1      234554444444445555454 5789999999999999999987  46799999


Q ss_pred             eCChHHHHHHHHHhhcCCCeEEE-EcCCCCchhhcccCC-CccEEEEcCC
Q 024665          175 EFSHRSGRDLVNMAKKRTNVIPI-IEDARHPAKYRMLVG-MVDVIFSDVA  222 (264)
Q Consensus       175 D~s~~~~~~l~~~a~~~~nV~~i-~~D~~~~~~~~~~~~-~fD~V~~d~p  222 (264)
                      |+|+.|++..+   ...+++... ..|++..... .+.. .||+|++|..
T Consensus       115 Dvs~~mL~~a~---r~~~rv~~~~~~ni~~l~~~-~l~~~~fD~v~~d~s  160 (291)
T 3hp7_A          115 DVGTNQLVWKL---RQDDRVRSMEQYNFRYAEPV-DFTEGLPSFASIDVS  160 (291)
T ss_dssp             CSSSSCSCHHH---HTCTTEEEECSCCGGGCCGG-GCTTCCCSEEEECCS
T ss_pred             ECCHHHHHHHH---HhCcccceecccCceecchh-hCCCCCCCEEEEEee
Confidence            99987753322   222344433 2344443321 1223 4999999987

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=98.99  E-value=1.4e-09  Score=93.10  Aligned_cols=83  Identities=13%  Similarity=0.183  Sum_probs=62.8

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCCCchh-hcc-------
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAK-YRM-------  209 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~~~~~-~~~-------  209 (264)
                      +.++.+|||+|||+|.++..++..+.+.++|+++|+++.+++.+.+.....   .+|+++++|+.+..+ ...       
T Consensus        58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~  137 (239)
T 2hnk_A           58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSW  137 (239)
T ss_dssp             HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGG
T ss_pred             hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccc
Confidence            567889999999999999999999765679999999988765555544322   259999999876432 100       


Q ss_pred             ----c-C-CCccEEEEcCCC
Q 024665          210 ----L-V-GMVDVIFSDVAQ  223 (264)
Q Consensus       210 ----~-~-~~fD~V~~d~p~  223 (264)
                          . . ++||+|+++...
T Consensus       138 ~~~f~~~~~~fD~I~~~~~~  157 (239)
T 2hnk_A          138 ASDFAFGPSSIDLFFLDADK  157 (239)
T ss_dssp             GTTTCCSTTCEEEEEECSCG
T ss_pred             cccccCCCCCcCEEEEeCCH
Confidence                0 1 689999998663

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=98.99  E-value=1.2e-09  Score=94.03  Aligned_cols=84  Identities=15%  Similarity=0.197  Sum_probs=63.8

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh---cCCCeEEEEcCCCCchhhcc----cCCC
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK---KRTNVIPIIEDARHPAKYRM----LVGM  213 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~---~~~nV~~i~~D~~~~~~~~~----~~~~  213 (264)
                      +.+..+|||+|||+|..++.+|+.+.+.++|+++|+++.+++.+.+...   ...+|+++++|+.+..+...    ..++
T Consensus        68 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~  147 (237)
T 3c3y_A           68 LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGS  147 (237)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTC
T ss_pred             hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCC
Confidence            4566799999999999999999998667899999999877655444433   22379999999987532100    1468


Q ss_pred             ccEEEEcCCCc
Q 024665          214 VDVIFSDVAQP  224 (264)
Q Consensus       214 fD~V~~d~p~~  224 (264)
                      ||+||+|.+.+
T Consensus       148 fD~I~~d~~~~  158 (237)
T 3c3y_A          148 YDFGFVDADKP  158 (237)
T ss_dssp             EEEEEECSCGG
T ss_pred             cCEEEECCchH
Confidence            99999997643

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.98  E-value=1.6e-09  Score=100.31  Aligned_cols=94  Identities=13%  Similarity=-0.025  Sum_probs=72.8

Q ss_pred             CcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCC-----------------------------------
Q 024665          123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGP-----------------------------------  167 (264)
Q Consensus       123 p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~-----------------------------------  167 (264)
                      |-...+++.++....   ++++..|||.+||||++++.+|.....                                   
T Consensus       184 pl~e~lAa~ll~l~~---~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~  260 (393)
T 3k0b_A          184 PIKETMAAALVLLTS---WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANY  260 (393)
T ss_dssp             SCCHHHHHHHHHHSC---CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCT
T ss_pred             CCcHHHHHHHHHHhC---CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcc
Confidence            445778888775544   788999999999999999999987542                                   


Q ss_pred             --CCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcccCCCccEEEEcCCC
Q 024665          168 --NGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       168 --~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~  223 (264)
                        ..+|+++|+|+.+++.+.+++..   ..+|++++.|+.+...    ..+||+|++|||.
T Consensus       261 ~~~~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~----~~~fD~Iv~NPPY  317 (393)
T 3k0b_A          261 DQPLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQT----EDEYGVVVANPPY  317 (393)
T ss_dssp             TCCCCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCC----CCCSCEEEECCCC
T ss_pred             cCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCC----CCCCCEEEECCCC
Confidence              14699999999887655554443   2369999999988652    3589999999994

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=98.98  E-value=2.8e-09  Score=98.31  Aligned_cols=76  Identities=20%  Similarity=0.171  Sum_probs=61.8

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC-CeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT-NVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~-nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      .++.+|||+|||+|.+++.++..   ..+|++||+|+.+++.+.++..... ++++++.|+.+...   ..++||+|++|
T Consensus       232 ~~~~~VLDlGcG~G~~~~~la~~---g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~---~~~~fD~Ii~n  305 (381)
T 3dmg_A          232 VRGRQVLDLGAGYGALTLPLARM---GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALT---EEARFDIIVTN  305 (381)
T ss_dssp             TTTCEEEEETCTTSTTHHHHHHT---TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSC---TTCCEEEEEEC
T ss_pred             CCCCEEEEEeeeCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccc---cCCCeEEEEEC
Confidence            47889999999999999999987   3499999999988766655554433 69999999988642   23689999999


Q ss_pred             CCC
Q 024665          221 VAQ  223 (264)
Q Consensus       221 ~p~  223 (264)
                      +|.
T Consensus       306 pp~  308 (381)
T 3dmg_A          306 PPF  308 (381)
T ss_dssp             CCC
T ss_pred             Cch
Confidence            884

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=98.98  E-value=3.6e-09  Score=88.00  Aligned_cols=75  Identities=16%  Similarity=0.165  Sum_probs=60.3

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      ++.+|||+|||+|.++..++... +..+|+++|+|+.+++.+.+.....  .|+++++.|+.+..+    .++||+|+++
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----~~~~D~i~~~  139 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS----EPPFDGVISR  139 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCC----CSCEEEEECS
T ss_pred             CCCeEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCc----cCCcCEEEEe
Confidence            57899999999999999999875 5679999999998876655554432  369999999987642    3689999987


Q ss_pred             CC
Q 024665          221 VA  222 (264)
Q Consensus       221 ~p  222 (264)
                      ..
T Consensus       140 ~~  141 (207)
T 1jsx_A          140 AF  141 (207)
T ss_dssp             CS
T ss_pred             cc
Confidence            54

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=98.98  E-value=4.3e-10  Score=94.30  Aligned_cols=80  Identities=16%  Similarity=0.109  Sum_probs=61.3

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh---cCCCeEEEEcCCCCchhhcccCCCccEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK---KRTNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~---~~~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      ..+..+|||+|||+|..++.++..+.+.++|+++|+|+.+++.+.+...   ...+|+++++|+.+..+  ...+ ||+|
T Consensus        54 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~-fD~v  130 (210)
T 3c3p_A           54 IKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAA--GQRD-IDIL  130 (210)
T ss_dssp             HHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHT--TCCS-EEEE
T ss_pred             hhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhc--cCCC-CCEE
Confidence            3466799999999999999999887547899999999887655544332   22369999999976532  2345 9999


Q ss_pred             EEcCCC
Q 024665          218 FSDVAQ  223 (264)
Q Consensus       218 ~~d~p~  223 (264)
                      ++|.+.
T Consensus       131 ~~~~~~  136 (210)
T 3c3p_A          131 FMDCDV  136 (210)
T ss_dssp             EEETTT
T ss_pred             EEcCCh
Confidence            999763

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.98  E-value=1.1e-09  Score=96.47  Aligned_cols=86  Identities=15%  Similarity=0.067  Sum_probs=67.3

Q ss_pred             HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchh
Q 024665          127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK  206 (264)
Q Consensus       127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~  206 (264)
                      .++..|+..++   +.++ +|||+|||+|.+|..|++..   .+|+|||+|+++++.+.+... ..|++++++|+.+.+.
T Consensus        34 ~i~~~Iv~~~~---~~~~-~VLEIG~G~G~lt~~L~~~~---~~V~avEid~~~~~~l~~~~~-~~~v~vi~~D~l~~~~  105 (271)
T 3fut_A           34 AHLRRIVEAAR---PFTG-PVFEVGPGLGALTRALLEAG---AEVTAIEKDLRLRPVLEETLS-GLPVRLVFQDALLYPW  105 (271)
T ss_dssp             HHHHHHHHHHC---CCCS-CEEEECCTTSHHHHHHHHTT---CCEEEEESCGGGHHHHHHHTT-TSSEEEEESCGGGSCG
T ss_pred             HHHHHHHHhcC---CCCC-eEEEEeCchHHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcC-CCCEEEEECChhhCCh
Confidence            45555655544   8888 99999999999999999873   489999999988766655544 3589999999987642


Q ss_pred             hcccCCCccEEEEcCC
Q 024665          207 YRMLVGMVDVIFSDVA  222 (264)
Q Consensus       207 ~~~~~~~fD~V~~d~p  222 (264)
                      .  ....+|.|++|+|
T Consensus       106 ~--~~~~~~~iv~NlP  119 (271)
T 3fut_A          106 E--EVPQGSLLVANLP  119 (271)
T ss_dssp             G--GSCTTEEEEEEEC
T ss_pred             h--hccCccEEEecCc
Confidence            1  1136899999999

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.98  E-value=1.3e-09  Score=100.66  Aligned_cols=82  Identities=16%  Similarity=0.140  Sum_probs=64.0

Q ss_pred             HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchh
Q 024665          127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK  206 (264)
Q Consensus       127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~  206 (264)
                      .++..++..+.   ..++.+|||+|||+|.+++.+++.+.+..+|+|+|+++.++    +.+   .+++++++|+.+.. 
T Consensus        26 ~l~~~~~~~~~---~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~----~~a---~~~~~~~~D~~~~~-   94 (421)
T 2ih2_A           26 EVVDFMVSLAE---APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKAL----DLP---PWAEGILADFLLWE-   94 (421)
T ss_dssp             HHHHHHHHHCC---CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTC----CCC---TTEEEEESCGGGCC-
T ss_pred             HHHHHHHHhhc---cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHH----HhC---CCCcEEeCChhhcC-
Confidence            45555554444   45567999999999999999999875567999999998663    222   58999999998754 


Q ss_pred             hcccCCCccEEEEcCC
Q 024665          207 YRMLVGMVDVIFSDVA  222 (264)
Q Consensus       207 ~~~~~~~fD~V~~d~p  222 (264)
                         ..++||+|++|||
T Consensus        95 ---~~~~fD~Ii~NPP  107 (421)
T 2ih2_A           95 ---PGEAFDLILGNPP  107 (421)
T ss_dssp             ---CSSCEEEEEECCC
T ss_pred             ---ccCCCCEEEECcC
Confidence               2368999999999

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.98  E-value=9.9e-10  Score=100.67  Aligned_cols=77  Identities=19%  Similarity=0.047  Sum_probs=60.1

Q ss_pred             CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccC----------
Q 024665          144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLV----------  211 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~----------  211 (264)
                      +.+|||+|||+|++++.+|..   ..+|++||+|+.+++.+.+++..+  .|++++++|+.+..+.....          
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~---~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~  290 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARN---FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGID  290 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGG---SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSC
T ss_pred             CCEEEEccCCCCHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhccccccccccc
Confidence            578999999999999999975   348999999998877766655443  38999999998754210000          


Q ss_pred             ---CCccEEEEcCCC
Q 024665          212 ---GMVDVIFSDVAQ  223 (264)
Q Consensus       212 ---~~fD~V~~d~p~  223 (264)
                         ..||+|++|||.
T Consensus       291 ~~~~~fD~Vv~dPPr  305 (369)
T 3bt7_A          291 LKSYQCETIFVDPPR  305 (369)
T ss_dssp             GGGCCEEEEEECCCT
T ss_pred             cccCCCCEEEECcCc
Confidence               279999999995

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.98  E-value=1.2e-09  Score=90.07  Aligned_cols=74  Identities=30%  Similarity=0.366  Sum_probs=57.2

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCC--------CEEEEEeCChHHHHHHHHHhhcCCCeEEE-EcCCCCchhhc--
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPN--------GVVYAVEFSHRSGRDLVNMAKKRTNVIPI-IEDARHPAKYR--  208 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~--------g~V~avD~s~~~~~~l~~~a~~~~nV~~i-~~D~~~~~~~~--  208 (264)
                      .++++.+|||+|||+|.++..+++.+++.        ++|+++|+|+.+         ...+++++ +.|+.+.....  
T Consensus        19 ~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~---------~~~~~~~~~~~d~~~~~~~~~~   89 (196)
T 2nyu_A           19 ILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF---------PLEGATFLCPADVTDPRTSQRI   89 (196)
T ss_dssp             CCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC---------CCTTCEEECSCCTTSHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc---------cCCCCeEEEeccCCCHHHHHHH
Confidence            36889999999999999999999997643        799999999721         12478999 99988753210  


Q ss_pred             ---ccCCCccEEEEcCC
Q 024665          209 ---MLVGMVDVIFSDVA  222 (264)
Q Consensus       209 ---~~~~~fD~V~~d~p  222 (264)
                         ....+||+|++|.+
T Consensus        90 ~~~~~~~~fD~V~~~~~  106 (196)
T 2nyu_A           90 LEVLPGRRADVILSDMA  106 (196)
T ss_dssp             HHHSGGGCEEEEEECCC
T ss_pred             HHhcCCCCCcEEEeCCC
Confidence               11248999999875

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=98.97  E-value=1.8e-09  Score=93.68  Aligned_cols=79  Identities=9%  Similarity=0.057  Sum_probs=60.2

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCCCchhhcccCCCccE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV  216 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~~~~~~~~~~~~fD~  216 (264)
                      .++++++|||+|||+|.+++.+|.. ++..+|+|+|+++.+++.+.+++...   .+|+++++|+.+...   ...+||+
T Consensus        18 ~v~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~---~~~~~D~   93 (244)
T 3gnl_A           18 YITKNERIADIGSDHAYLPCFAVKN-QTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIE---KKDAIDT   93 (244)
T ss_dssp             TCCSSEEEEEETCSTTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC---GGGCCCE
T ss_pred             hCCCCCEEEEECCccHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccC---ccccccE
Confidence            4678999999999999999999986 45678999999988865555554433   369999999987542   1135998


Q ss_pred             EE-EcCC
Q 024665          217 IF-SDVA  222 (264)
Q Consensus       217 V~-~d~p  222 (264)
                      |+ +.+-
T Consensus        94 IviagmG  100 (244)
T 3gnl_A           94 IVIAGMG  100 (244)
T ss_dssp             EEEEEEC
T ss_pred             EEEeCCc
Confidence            76 4443

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.97  E-value=2.1e-09  Score=99.25  Aligned_cols=102  Identities=18%  Similarity=0.081  Sum_probs=76.3

Q ss_pred             eecceE---eCCcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCC------------------------
Q 024665          115 KVEYRI---WNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGP------------------------  167 (264)
Q Consensus       115 ~~~yr~---~~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~------------------------  167 (264)
                      +..||.   .-|-...+++.++....   ++++..|||.+||||++.+.+|.....                        
T Consensus       166 kRgyr~~~~~Apl~e~LAaall~l~~---~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~  242 (384)
T 3ldg_A          166 KRGYRTEKGGAPIKENMAAAIILLSN---WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTR  242 (384)
T ss_dssp             CCSCCCC---CCCCHHHHHHHHHHTT---CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHH
T ss_pred             ccCcccCCCCCCCcHHHHHHHHHHhC---CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHH
Confidence            345554   33555778888775544   788999999999999999999987542                        


Q ss_pred             -------------CCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcccCCCccEEEEcCCC
Q 024665          168 -------------NGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       168 -------------~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~  223 (264)
                                   ..+|+++|+|+.+++.+.+++..   ..+|++++.|+.+...    ...||+|++|||.
T Consensus       243 ~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~----~~~fD~Iv~NPPY  310 (384)
T 3ldg_A          243 VRNEADEQADYDIQLDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKT----NKINGVLISNPPY  310 (384)
T ss_dssp             HHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCC----CCCSCEEEECCCC
T ss_pred             HHHHHHHhhhccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCc----cCCcCEEEECCch
Confidence                         14699999999887665555443   2369999999988652    3589999999993

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=98.97  E-value=7.7e-10  Score=102.08  Aligned_cols=80  Identities=19%  Similarity=0.081  Sum_probs=62.0

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---C-CeEEEEcCCCCchhh-cccCCCccE
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---T-NVIPIIEDARHPAKY-RMLVGMVDV  216 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~-nV~~i~~D~~~~~~~-~~~~~~fD~  216 (264)
                      .++++|||+|||+|.+++.+|..  ...+|++||+|+.+++.+.+++..+   . |++++++|+.+..+. .....+||+
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~--ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~  288 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMG--GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDI  288 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHT--TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccE
Confidence            67899999999999999999975  3458999999988866655554433   3 899999999875421 111348999


Q ss_pred             EEEcCCC
Q 024665          217 IFSDVAQ  223 (264)
Q Consensus       217 V~~d~p~  223 (264)
                      |++|+|.
T Consensus       289 Ii~DPP~  295 (385)
T 2b78_A          289 IIIDPPS  295 (385)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999995

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=98.97  E-value=2e-09  Score=92.63  Aligned_cols=79  Identities=13%  Similarity=0.159  Sum_probs=60.7

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcccCCCccE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVDV  216 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~~~~fD~  216 (264)
                      .++++++|||+|||+|.+++.++.. ++..+|+|+|+++.+++.+.+++..   ..+|+++++|+.+...   ...+||+
T Consensus        18 ~v~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~---~~~~~D~   93 (230)
T 3lec_A           18 YVPKGARLLDVGSDHAYLPIFLLQM-GYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFE---EADNIDT   93 (230)
T ss_dssp             TSCTTEEEEEETCSTTHHHHHHHHT-TCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC---GGGCCCE
T ss_pred             hCCCCCEEEEECCchHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccc---cccccCE
Confidence            4678999999999999999999986 4567899999998876555544433   3479999999987542   1237998


Q ss_pred             EE-EcCC
Q 024665          217 IF-SDVA  222 (264)
Q Consensus       217 V~-~d~p  222 (264)
                      |+ +.+-
T Consensus        94 IviaGmG  100 (230)
T 3lec_A           94 ITICGMG  100 (230)
T ss_dssp             EEEEEEC
T ss_pred             EEEeCCc
Confidence            76 5554

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=98.97  E-value=1.6e-09  Score=95.73  Aligned_cols=83  Identities=17%  Similarity=0.035  Sum_probs=62.2

Q ss_pred             HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC-----CCeEEEEcCC
Q 024665          127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-----TNVIPIIEDA  201 (264)
Q Consensus       127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~-----~nV~~i~~D~  201 (264)
                      .....++..+.   .++ .+|||||||+|.++..+++.   ..+|+++|+|+.+++.+.+.....     .+|++++.|+
T Consensus        70 ~~~~~~~~~~~---~~~-~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~  142 (299)
T 3g2m_A           70 SEAREFATRTG---PVS-GPVLELAAGMGRLTFPFLDL---GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDM  142 (299)
T ss_dssp             HHHHHHHHHHC---CCC-SCEEEETCTTTTTHHHHHTT---TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBT
T ss_pred             HHHHHHHHhhC---CCC-CcEEEEeccCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCch
Confidence            34444443333   333 49999999999999999987   347999999998877666655443     5899999999


Q ss_pred             CCchhhcccCCCccEEEEc
Q 024665          202 RHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       202 ~~~~~~~~~~~~fD~V~~d  220 (264)
                      .+++    ..++||+|++.
T Consensus       143 ~~~~----~~~~fD~v~~~  157 (299)
T 3g2m_A          143 SAFA----LDKRFGTVVIS  157 (299)
T ss_dssp             TBCC----CSCCEEEEEEC
T ss_pred             hcCC----cCCCcCEEEEC
Confidence            9865    25789999863

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=98.96  E-value=2.3e-09  Score=94.05  Aligned_cols=78  Identities=24%  Similarity=0.305  Sum_probs=55.0

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      .++++.+|||||||+|.+++.+++.   ..+|++||+|+.|++.+.+.+... .+..-..|+.... .....++||+|++
T Consensus        42 ~l~~g~~VLDlGcGtG~~a~~La~~---g~~V~gvD~S~~ml~~Ar~~~~~~-~v~~~~~~~~~~~-~~~~~~~fD~Vv~  116 (261)
T 3iv6_A           42 NIVPGSTVAVIGASTRFLIEKALER---GASVTVFDFSQRMCDDLAEALADR-CVTIDLLDITAEI-PKELAGHFDFVLN  116 (261)
T ss_dssp             TCCTTCEEEEECTTCHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTSSS-CCEEEECCTTSCC-CGGGTTCCSEEEE
T ss_pred             CCCCcCEEEEEeCcchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHhc-cceeeeeeccccc-ccccCCCccEEEE
Confidence            4889999999999999999999986   348999999999876665554332 2333333322100 0123468999999


Q ss_pred             cCC
Q 024665          220 DVA  222 (264)
Q Consensus       220 d~p  222 (264)
                      +..
T Consensus       117 ~~~  119 (261)
T 3iv6_A          117 DRL  119 (261)
T ss_dssp             ESC
T ss_pred             hhh
Confidence            865

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.96  E-value=3.7e-09  Score=89.72  Aligned_cols=76  Identities=16%  Similarity=0.136  Sum_probs=59.1

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      ..++.+|||+|||+|.++..+++.  ...+|+++|+|+.+++.+.+... ..++++++.|+.+.+   ...++||+|++.
T Consensus        41 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~~---~~~~~fD~v~~~  114 (243)
T 3bkw_A           41 EVGGLRIVDLGCGFGWFCRWAHEH--GASYVLGLDLSEKMLARARAAGP-DTGITYERADLDKLH---LPQDSFDLAYSS  114 (243)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHTSC-SSSEEEEECCGGGCC---CCTTCEEEEEEE
T ss_pred             ccCCCEEEEEcCcCCHHHHHHHHC--CCCeEEEEcCCHHHHHHHHHhcc-cCCceEEEcChhhcc---CCCCCceEEEEe
Confidence            568899999999999999999986  23489999999987655443332 247999999998754   234689999987


Q ss_pred             CC
Q 024665          221 VA  222 (264)
Q Consensus       221 ~p  222 (264)
                      ..
T Consensus       115 ~~  116 (243)
T 3bkw_A          115 LA  116 (243)
T ss_dssp             SC
T ss_pred             cc
Confidence            55

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=98.96  E-value=2.4e-09  Score=91.93  Aligned_cols=76  Identities=14%  Similarity=0.127  Sum_probs=58.3

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcccCCCccE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVDV  216 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~~~~fD~  216 (264)
                      .++++++|||+|||+|.+++.+|.. .+..+|+|+|+++.+++.+.+++..   ..+|+++++|+.+..+.   ..+||+
T Consensus        12 ~v~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~---~~~~D~   87 (225)
T 3kr9_A           12 FVSQGAILLDVGSDHAYLPIELVER-GQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE---TDQVSV   87 (225)
T ss_dssp             TSCTTEEEEEETCSTTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG---GGCCCE
T ss_pred             hCCCCCEEEEeCCCcHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc---CcCCCE
Confidence            3678999999999999999999986 5677999999998876555554443   33799999999764321   126998


Q ss_pred             EEE
Q 024665          217 IFS  219 (264)
Q Consensus       217 V~~  219 (264)
                      |+.
T Consensus        88 Ivi   90 (225)
T 3kr9_A           88 ITI   90 (225)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            774

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=98.96  E-value=4.1e-09  Score=93.84  Aligned_cols=79  Identities=18%  Similarity=0.150  Sum_probs=59.5

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh-----c-CCCeEEEEcCCCCchhhcccCCCccE
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK-----K-RTNVIPIIEDARHPAKYRMLVGMVDV  216 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~-----~-~~nV~~i~~D~~~~~~~~~~~~~fD~  216 (264)
                      +..+|||+|||+|.++..+++.. +..+|++||+|+.+++.+.+...     . .++++++++|+.+...  ...++||+
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~--~~~~~fD~  166 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVR--KFKNEFDV  166 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGG--GCSSCEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHh--hCCCCceE
Confidence            45799999999999999999863 45799999999988655554432     1 3589999999877532  13468999


Q ss_pred             EEEcCCCc
Q 024665          217 IFSDVAQP  224 (264)
Q Consensus       217 V~~d~p~~  224 (264)
                      |++|++.|
T Consensus       167 Ii~d~~~~  174 (296)
T 1inl_A          167 IIIDSTDP  174 (296)
T ss_dssp             EEEEC---
T ss_pred             EEEcCCCc
Confidence            99998865

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=98.96  E-value=4.4e-09  Score=95.35  Aligned_cols=81  Identities=17%  Similarity=0.147  Sum_probs=61.7

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc------CCCeEEEEcCCCCchhhcccCCCc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK------RTNVIPIIEDARHPAKYRMLVGMV  214 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~------~~nV~~i~~D~~~~~~~~~~~~~f  214 (264)
                      ..+..+|||||||+|.++..+++.. +..+|++||+|+.+++.+.+....      .++|+++++|+.+.... ...++|
T Consensus       118 ~~~~~~VLdIG~G~G~~a~~la~~~-~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~-~~~~~f  195 (334)
T 1xj5_A          118 IPNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKN-AAEGSY  195 (334)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHT-SCTTCE
T ss_pred             CCCCCEEEEECCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHh-ccCCCc
Confidence            3456899999999999999999763 457999999999887655544321      35899999999775321 123689


Q ss_pred             cEEEEcCCC
Q 024665          215 DVIFSDVAQ  223 (264)
Q Consensus       215 D~V~~d~p~  223 (264)
                      |+|++|++.
T Consensus       196 DlIi~d~~~  204 (334)
T 1xj5_A          196 DAVIVDSSD  204 (334)
T ss_dssp             EEEEECCCC
T ss_pred             cEEEECCCC
Confidence            999999874

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.96  E-value=4e-09  Score=98.62  Aligned_cols=90  Identities=11%  Similarity=-0.023  Sum_probs=68.9

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC-CeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT-NVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~-nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      +.++++|||+|||+|.+++.+|+.   ..+|+++|+|+.+++.+.+++..+. +++++++|+.+...     .+||+|++
T Consensus       288 ~~~~~~VLDlgcG~G~~sl~la~~---~~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~-----~~fD~Vv~  359 (425)
T 2jjq_A          288 LVEGEKILDMYSGVGTFGIYLAKR---GFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSV-----KGFDTVIV  359 (425)
T ss_dssp             HCCSSEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCC-----TTCSEEEE
T ss_pred             cCCCCEEEEeeccchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcCc-----cCCCEEEE
Confidence            568899999999999999999986   3489999999988766665554321 39999999988642     28999999


Q ss_pred             cCCC--chHHHHHHHHHhCCC
Q 024665          220 DVAQ--PDQVCFLCLILFQPI  238 (264)
Q Consensus       220 d~p~--~~~~~~~~~~~l~~~  238 (264)
                      |+|.  ........+..+.|.
T Consensus       360 dPPr~g~~~~~~~~l~~l~p~  380 (425)
T 2jjq_A          360 DPPRAGLHPRLVKRLNREKPG  380 (425)
T ss_dssp             CCCTTCSCHHHHHHHHHHCCS
T ss_pred             cCCccchHHHHHHHHHhcCCC
Confidence            9993  233344555567776

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=98.95  E-value=3.7e-09  Score=92.54  Aligned_cols=91  Identities=22%  Similarity=0.191  Sum_probs=68.3

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      ++.+|||+|||+|.++..++..   ..+|+++|+|+.+++.+.+.....   .++++++.|+.+++.+  ..++||+|++
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~fD~v~~  142 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAER---GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASH--LETPVDLILF  142 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGG--CSSCEEEEEE
T ss_pred             CCCEEEEeCCcchHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhh--cCCCceEEEE
Confidence            3679999999999999999987   358999999998876666555433   4899999999887632  4578999998


Q ss_pred             cCC-----CchHHHHHHHHHhCCC
Q 024665          220 DVA-----QPDQVCFLCLILFQPI  238 (264)
Q Consensus       220 d~p-----~~~~~~~~~~~~l~~~  238 (264)
                      ...     .+..........++|+
T Consensus       143 ~~~l~~~~~~~~~l~~~~~~Lkpg  166 (285)
T 4htf_A          143 HAVLEWVADPRSVLQTLWSVLRPG  166 (285)
T ss_dssp             ESCGGGCSCHHHHHHHHHHTEEEE
T ss_pred             CchhhcccCHHHHHHHHHHHcCCC
Confidence            755     3444444455555555

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=98.95  E-value=1.9e-09  Score=94.50  Aligned_cols=75  Identities=23%  Similarity=0.166  Sum_probs=61.3

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC-CeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT-NVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~-nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      ..++.+|||+|||+|.++..++..   ..+|+++|+|+.+++.+.+.+.... ++++++.|+.+...    .++||+|++
T Consensus       118 ~~~~~~vLD~GcG~G~~~~~l~~~---g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~----~~~fD~i~~  190 (286)
T 3m70_A          118 IISPCKVLDLGCGQGRNSLYLSLL---GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI----QENYDFIVS  190 (286)
T ss_dssp             HSCSCEEEEESCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC----CSCEEEEEE
T ss_pred             ccCCCcEEEECCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc----cCCccEEEE
Confidence            447889999999999999999987   3489999999988766666554433 89999999987542    578999999


Q ss_pred             cCC
Q 024665          220 DVA  222 (264)
Q Consensus       220 d~p  222 (264)
                      +.+
T Consensus       191 ~~~  193 (286)
T 3m70_A          191 TVV  193 (286)
T ss_dssp             CSS
T ss_pred             ccc
Confidence            865

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=98.95  E-value=5.2e-09  Score=93.46  Aligned_cols=82  Identities=16%  Similarity=0.129  Sum_probs=61.5

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh------cCCCeEEEEcCCCCchhhcccCCCc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK------KRTNVIPIIEDARHPAKYRMLVGMV  214 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~------~~~nV~~i~~D~~~~~~~~~~~~~f  214 (264)
                      .++..+|||+|||+|.++..+++. .+..+|++||+|+.+++.+.+...      ..++++++++|+.+.... ...++|
T Consensus        93 ~~~~~~VLdiG~G~G~~~~~l~~~-~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~-~~~~~f  170 (304)
T 3bwc_A           93 HPKPERVLIIGGGDGGVLREVLRH-GTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQ-TPDNTY  170 (304)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHHTC-TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHS-SCTTCE
T ss_pred             CCCCCeEEEEcCCCCHHHHHHHhC-CCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHh-ccCCce
Confidence            356689999999999999999976 345699999999988655554331      235899999999875421 124689


Q ss_pred             cEEEEcCCCc
Q 024665          215 DVIFSDVAQP  224 (264)
Q Consensus       215 D~V~~d~p~~  224 (264)
                      |+|++|.+.+
T Consensus       171 DvIi~d~~~~  180 (304)
T 3bwc_A          171 DVVIIDTTDP  180 (304)
T ss_dssp             EEEEEECC--
T ss_pred             eEEEECCCCc
Confidence            9999998754

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.95  E-value=1.7e-10  Score=103.44  Aligned_cols=89  Identities=17%  Similarity=0.106  Sum_probs=60.5

Q ss_pred             chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeC----ChHHHHHHHHHhhc-CCCeEEEEc
Q 024665          125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEF----SHRSGRDLVNMAKK-RTNVIPIIE  199 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~----s~~~~~~l~~~a~~-~~nV~~i~~  199 (264)
                      ++..+..+...++...++|+.+|||||||+|.++..+++.    ++|++||+    ++.++ +.+..+.. .++|+++++
T Consensus        64 ~sR~a~KL~~i~~~~~~~~g~~VLDlGcG~G~~s~~la~~----~~V~gvD~~~~~~~~~~-~~~~~~~~~~~~v~~~~~  138 (305)
T 2p41_A           64 VSRGSAKLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGL----KNVREVKGLTKGGPGHE-EPIPMSTYGWNLVRLQSG  138 (305)
T ss_dssp             SSTHHHHHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTS----TTEEEEEEECCCSTTSC-CCCCCCSTTGGGEEEECS
T ss_pred             cccHHHHHHHHHHcCCCCCCCEEEEEcCCCCHHHHHHHhc----CCEEEEeccccCchhHH-HHHHhhhcCCCCeEEEec
Confidence            4444444443333335788999999999999999999976    47999999    44221 11111111 147999999


Q ss_pred             -CCCCchhhcccCCCccEEEEcCCC
Q 024665          200 -DARHPAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       200 -D~~~~~~~~~~~~~fD~V~~d~p~  223 (264)
                       |+.+++     .++||+|++|++.
T Consensus       139 ~D~~~l~-----~~~fD~V~sd~~~  158 (305)
T 2p41_A          139 VDVFFIP-----PERCDTLLCDIGE  158 (305)
T ss_dssp             CCTTTSC-----CCCCSEEEECCCC
T ss_pred             cccccCC-----cCCCCEEEECCcc
Confidence             887753     3589999999873

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.95  E-value=1.5e-09  Score=98.21  Aligned_cols=73  Identities=16%  Similarity=0.203  Sum_probs=60.0

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCCCchhhcccCCCccEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      ++++++|||+|||+|.+++. |.   ...+|+++|+|+.+++.+.+++..+   .|++++++|+.+..      .+||+|
T Consensus       193 ~~~~~~VLDlg~G~G~~~l~-a~---~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~------~~fD~V  262 (336)
T 2yx1_A          193 VSLNDVVVDMFAGVGPFSIA-CK---NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD------VKGNRV  262 (336)
T ss_dssp             CCTTCEEEETTCTTSHHHHH-TT---TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC------CCEEEE
T ss_pred             cCCCCEEEEccCccCHHHHh-cc---CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc------CCCcEE
Confidence            46899999999999999999 76   3669999999998876655554433   48999999998753      689999


Q ss_pred             EEcCCC
Q 024665          218 FSDVAQ  223 (264)
Q Consensus       218 ~~d~p~  223 (264)
                      ++|+|.
T Consensus       263 i~dpP~  268 (336)
T 2yx1_A          263 IMNLPK  268 (336)
T ss_dssp             EECCTT
T ss_pred             EECCcH
Confidence            999884

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.95  E-value=9.9e-11  Score=101.17  Aligned_cols=123  Identities=12%  Similarity=0.045  Sum_probs=78.3

Q ss_pred             HHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhh
Q 024665          128 LAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY  207 (264)
Q Consensus       128 l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~  207 (264)
                      ++..++..+.   +.++++|||+|||+|.++..+++..   .+|+++|+|+.+++.+.+......+++++++|+.+.+..
T Consensus        17 ~~~~i~~~~~---~~~~~~VLDiG~G~G~~~~~l~~~~---~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~   90 (245)
T 1yub_A           17 VLNQIIKQLN---LKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFP   90 (245)
T ss_dssp             THHHHHHHCC---CCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCC
T ss_pred             HHHHHHHhcC---CCCCCEEEEEeCCCCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcc
Confidence            3444544444   7889999999999999999999883   589999999866433222222234899999999886410


Q ss_pred             cccCCCccEEEEcCCCch-HHHHHHHHHhCCCcHHHH----HHHHHHhh-cchhhhhh
Q 024665          208 RMLVGMVDVIFSDVAQPD-QVCFLCLILFQPIVINNL----QSVNNETK-GGIFEFLF  259 (264)
Q Consensus       208 ~~~~~~fD~V~~d~p~~~-~~~~~~~~~l~~~~~~~l----~~~~~~Lk-~g~f~~l~  259 (264)
                        ..++| .|++|+|... ......+..+.+.....+    ..+.+.|+ +|.+.++.
T Consensus        91 --~~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~  145 (245)
T 1yub_A           91 --NKQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL  145 (245)
T ss_dssp             --CSSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred             --cCCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence              12468 8899999322 122222222233322223    55667777 66666554

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=98.95  E-value=2.7e-09  Score=88.65  Aligned_cols=77  Identities=17%  Similarity=0.147  Sum_probs=61.9

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      ++++.+|||+|||+|.++..+++. +.. +|+++|+|+.+++.+.+......++++++.|+.+++   ...++||+|+++
T Consensus        40 ~~~~~~vLdiGcG~G~~~~~l~~~-~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~v~~~  114 (215)
T 2pxx_A           40 LRPEDRILVLGCGNSALSYELFLG-GFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLD---FPSASFDVVLEK  114 (215)
T ss_dssp             CCTTCCEEEETCTTCSHHHHHHHT-TCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCC---SCSSCEEEEEEE
T ss_pred             cCCCCeEEEECCCCcHHHHHHHHc-CCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCC---CCCCcccEEEEC
Confidence            578899999999999999999987 222 899999999887666665544468999999998863   234689999987


Q ss_pred             CC
Q 024665          221 VA  222 (264)
Q Consensus       221 ~p  222 (264)
                      .+
T Consensus       115 ~~  116 (215)
T 2pxx_A          115 GT  116 (215)
T ss_dssp             SH
T ss_pred             cc
Confidence            54

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=98.95  E-value=4.7e-09  Score=95.18  Aligned_cols=75  Identities=20%  Similarity=0.180  Sum_probs=59.5

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcccCCCccEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      +.++.+|||+|||+|.++..+++.  +..+|+++|+|+ +++.+.+....   ..+|+++++|+.+..   ...++||+|
T Consensus        62 ~~~~~~VLDiGcGtG~ls~~la~~--g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~I  135 (340)
T 2fyt_A           62 IFKDKVVLDVGCGTGILSMFAAKA--GAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVH---LPVEKVDVI  135 (340)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSC---CSCSCEEEE
T ss_pred             hcCCCEEEEeeccCcHHHHHHHHc--CCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhc---CCCCcEEEE
Confidence            678899999999999999999986  356999999996 65554443332   258999999998864   223689999


Q ss_pred             EEcC
Q 024665          218 FSDV  221 (264)
Q Consensus       218 ~~d~  221 (264)
                      +++.
T Consensus       136 vs~~  139 (340)
T 2fyt_A          136 ISEW  139 (340)
T ss_dssp             EECC
T ss_pred             EEcC
Confidence            9986

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=98.95  E-value=1.9e-09  Score=91.74  Aligned_cols=74  Identities=19%  Similarity=0.194  Sum_probs=58.6

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCCCchhhcccCCCccEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      +++ .+|||+|||+|.++..++.   +..+|+++|+|+.+++.+.+.....   .+|++++.|+.++.    ...+||+|
T Consensus        65 ~~~-~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~fD~v  136 (235)
T 3lcc_A           65 LPL-GRALVPGCGGGHDVVAMAS---PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR----PTELFDLI  136 (235)
T ss_dssp             SCC-EEEEEETCTTCHHHHHHCB---TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC----CSSCEEEE
T ss_pred             CCC-CCEEEeCCCCCHHHHHHHh---CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC----CCCCeeEE
Confidence            444 4999999999999999976   3568999999998876666655432   37999999998865    23589999


Q ss_pred             EEcCC
Q 024665          218 FSDVA  222 (264)
Q Consensus       218 ~~d~p  222 (264)
                      ++...
T Consensus       137 ~~~~~  141 (235)
T 3lcc_A          137 FDYVF  141 (235)
T ss_dssp             EEESS
T ss_pred             EEChh
Confidence            98654

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=98.95  E-value=6.3e-09  Score=97.39  Aligned_cols=93  Identities=17%  Similarity=0.193  Sum_probs=64.9

Q ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHH-------HHHhhc----CCCe
Q 024665          126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDL-------VNMAKK----RTNV  194 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l-------~~~a~~----~~nV  194 (264)
                      ..+++.++..+.   ++++++|||||||+|.+++.+|..++ ..+|++||+++.+++.+       .+.+..    ..||
T Consensus       228 p~~v~~ml~~l~---l~~g~~VLDLGCGsG~la~~LA~~~g-~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV  303 (433)
T 1u2z_A          228 PNFLSDVYQQCQ---LKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNV  303 (433)
T ss_dssp             HHHHHHHHHHTT---CCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCE
T ss_pred             HHHHHHHHHhcC---CCCCCEEEEeCCCcCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCce
Confidence            445555554444   88999999999999999999999874 45899999998765433       222221    2589


Q ss_pred             EEEEcCCCC-chhhcccCCCccEEEEcCC
Q 024665          195 IPIIEDARH-PAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       195 ~~i~~D~~~-~~~~~~~~~~fD~V~~d~p  222 (264)
                      +++++|... ...+......||+|+++..
T Consensus       304 ~~i~gD~~~~~~~~~~~~~~FDvIvvn~~  332 (433)
T 1u2z_A          304 EFSLKKSFVDNNRVAELIPQCDVILVNNF  332 (433)
T ss_dssp             EEEESSCSTTCHHHHHHGGGCSEEEECCT
T ss_pred             EEEEcCccccccccccccCCCCEEEEeCc
Confidence            999987553 2211112368999999744

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=98.94  E-value=3.6e-09  Score=91.15  Aligned_cols=82  Identities=11%  Similarity=-0.017  Sum_probs=59.1

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcC---C---C--------------------
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR---T---N--------------------  193 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~---~---n--------------------  193 (264)
                      ..++.+|||+|||+|.+++.++..+ .+..+|+++|+|+.+++.+.+.....   .   +                    
T Consensus        49 ~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (250)
T 1o9g_A           49 GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAA  128 (250)
T ss_dssp             CCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred             cCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhh
Confidence            3467899999999999999999873 23568999999998865554433222   0   1                    


Q ss_pred             -----eE-------------EEEcCCCCchhhc-c-cCCCccEEEEcCC
Q 024665          194 -----VI-------------PIIEDARHPAKYR-M-LVGMVDVIFSDVA  222 (264)
Q Consensus       194 -----V~-------------~i~~D~~~~~~~~-~-~~~~fD~V~~d~p  222 (264)
                           |+             +++.|+.+..... . ...+||+|++|+|
T Consensus       129 ~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp  177 (250)
T 1o9g_A          129 QAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLP  177 (250)
T ss_dssp             HHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECC
T ss_pred             hhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCC
Confidence                 66             9999998754200 0 1248999999988

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=98.94  E-value=3.4e-09  Score=92.95  Aligned_cols=89  Identities=13%  Similarity=-0.017  Sum_probs=63.5

Q ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc------CCCeEEEEc
Q 024665          126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK------RTNVIPIIE  199 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~------~~nV~~i~~  199 (264)
                      ..+...+...+.   ..++.+|||+|||+|.++..+++.   ..+|+++|+|+.+++.+.+.+..      ..++.+++.
T Consensus        43 ~~~~~~l~~~l~---~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~  116 (293)
T 3thr_A           43 AEYKAWLLGLLR---QHGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEA  116 (293)
T ss_dssp             HHHHHHHHHHHH---HTTCCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEEC
T ss_pred             HHHHHHHHHHhc---ccCCCEEEEecCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeec
Confidence            334444443333   567889999999999999999987   23999999999887665544311      137899999


Q ss_pred             CCCCchhhcccCCCccEEEEc
Q 024665          200 DARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       200 D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      |+.+++......++||+|++.
T Consensus       117 d~~~~~~~~~~~~~fD~V~~~  137 (293)
T 3thr_A          117 NWLTLDKDVPAGDGFDAVICL  137 (293)
T ss_dssp             CGGGHHHHSCCTTCEEEEEEC
T ss_pred             ChhhCccccccCCCeEEEEEc
Confidence            998754110134689999985

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.94  E-value=1.9e-09  Score=95.24  Aligned_cols=78  Identities=26%  Similarity=0.204  Sum_probs=61.9

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHh----h--------cCCCeEEEEcCCCCchhhcc
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA----K--------KRTNVIPIIEDARHPAKYRM  209 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a----~--------~~~nV~~i~~D~~~~~~~~~  209 (264)
                      .+..+|||+|||+|.++..+++.  +..+|++||+++.+++.+.+..    .        ..++++++++|+.+...  .
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~--~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~--~  149 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIK--N  149 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHH--H
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhc--c
Confidence            45689999999999999999987  5679999999998876555443    1        23589999999876542  1


Q ss_pred             cCCCccEEEEcCCCc
Q 024665          210 LVGMVDVIFSDVAQP  224 (264)
Q Consensus       210 ~~~~fD~V~~d~p~~  224 (264)
                       .++||+|++|++.|
T Consensus       150 -~~~fD~Ii~d~~~~  163 (281)
T 1mjf_A          150 -NRGFDVIIADSTDP  163 (281)
T ss_dssp             -CCCEEEEEEECCCC
T ss_pred             -cCCeeEEEECCCCC
Confidence             46899999999854

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=98.93  E-value=7e-10  Score=98.50  Aligned_cols=79  Identities=11%  Similarity=0.095  Sum_probs=63.5

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCCCchhhcccCCCccE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDV  216 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~~~~~~~~~~~~fD~  216 (264)
                      .++++.+|||+|||+|.++..+|....+..+|+++|+|+.+++.+.+.....   .+|+++++|+.+++    ..++||+
T Consensus       115 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~fD~  190 (305)
T 3ocj_A          115 HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLD----TREGYDL  190 (305)
T ss_dssp             HCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCC----CCSCEEE
T ss_pred             hCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCC----ccCCeEE
Confidence            4789999999999999999999644457789999999998876666655432   25999999998864    1278999


Q ss_pred             EEEcCC
Q 024665          217 IFSDVA  222 (264)
Q Consensus       217 V~~d~p  222 (264)
                      |+++.+
T Consensus       191 v~~~~~  196 (305)
T 3ocj_A          191 LTSNGL  196 (305)
T ss_dssp             EECCSS
T ss_pred             EEECCh
Confidence            998765

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=98.93  E-value=4.4e-09  Score=96.64  Aligned_cols=76  Identities=26%  Similarity=0.226  Sum_probs=60.2

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcccCCCccE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVDV  216 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~~~~fD~  216 (264)
                      .+.++.+|||||||+|.+++.+++.  ...+|++||+| .+++.+.+....   ..+|+++++|+.+..    +.++||+
T Consensus        60 ~~~~~~~VLDlGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~D~  132 (376)
T 3r0q_C           60 HHFEGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDIS----LPEKVDV  132 (376)
T ss_dssp             TTTTTCEEEEESCTTTHHHHHHHHT--TCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCC----CSSCEEE
T ss_pred             ccCCCCEEEEeccCcCHHHHHHHhc--CCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcC----cCCcceE
Confidence            4778999999999999999999987  34599999999 665554444332   346999999998765    2378999


Q ss_pred             EEEcCC
Q 024665          217 IFSDVA  222 (264)
Q Consensus       217 V~~d~p  222 (264)
                      |+++..
T Consensus       133 Iv~~~~  138 (376)
T 3r0q_C          133 IISEWM  138 (376)
T ss_dssp             EEECCC
T ss_pred             EEEcCh
Confidence            999874

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=98.92  E-value=2.4e-09  Score=91.55  Aligned_cols=77  Identities=12%  Similarity=-0.071  Sum_probs=60.5

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIF  218 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~  218 (264)
                      .+++.+|||+|||+|.++..++...  ..+|+++|+|+.+++.+.+.....  .++++++.|+.++..   ..++||+|+
T Consensus        77 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~---~~~~fD~v~  151 (241)
T 2ex4_A           77 KTGTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTP---EPDSYDVIW  151 (241)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCC---CSSCEEEEE
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCC---CCCCEEEEE
Confidence            3468999999999999999998764  458999999998876666555432  369999999877542   345899999


Q ss_pred             EcCC
Q 024665          219 SDVA  222 (264)
Q Consensus       219 ~d~p  222 (264)
                      ++..
T Consensus       152 ~~~~  155 (241)
T 2ex4_A          152 IQWV  155 (241)
T ss_dssp             EESC
T ss_pred             Ecch
Confidence            9855

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.92  E-value=1.2e-09  Score=101.14  Aligned_cols=95  Identities=13%  Similarity=-0.124  Sum_probs=68.5

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CC-eEEEEcCCCCchh-hcccCCCccE
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TN-VIPIIEDARHPAK-YRMLVGMVDV  216 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~n-V~~i~~D~~~~~~-~~~~~~~fD~  216 (264)
                      +++.+|||++||+|.+++.+|..+....+|+++|+++.+++.+.+++..+   .+ ++++++|+.+... .  ....||+
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~--~~~~fD~  128 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKE--WGFGFDY  128 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSC--CSSCEEE
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHh--hCCCCcE
Confidence            57899999999999999999997644468999999987765555544433   23 9999999987543 2  2357999


Q ss_pred             EEEcCCC-chHHHHHHHHHhCCC
Q 024665          217 IFSDVAQ-PDQVCFLCLILFQPI  238 (264)
Q Consensus       217 V~~d~p~-~~~~~~~~~~~l~~~  238 (264)
                      |++||+. +......++..+++.
T Consensus       129 V~lDP~g~~~~~l~~a~~~Lk~g  151 (392)
T 3axs_A          129 VDLDPFGTPVPFIESVALSMKRG  151 (392)
T ss_dssp             EEECCSSCCHHHHHHHHHHEEEE
T ss_pred             EEECCCcCHHHHHHHHHHHhCCC
Confidence            9999963 233334444444443

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=98.92  E-value=5.2e-09  Score=89.34  Aligned_cols=90  Identities=24%  Similarity=0.275  Sum_probs=66.8

Q ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCC
Q 024665          126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARH  203 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~  203 (264)
                      ..+...++..+.   ++++.+|||+|||+|.++..+++...  .+|+++|+++.+++.+.+.....  .|+++++.|+..
T Consensus        77 ~~~~~~~~~~l~---~~~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~  151 (235)
T 1jg1_A           77 PHMVAIMLEIAN---LKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSK  151 (235)
T ss_dssp             HHHHHHHHHHHT---CCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG
T ss_pred             HHHHHHHHHhcC---CCCCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCccc
Confidence            445555555444   88999999999999999999999874  68999999988866655544332  379999999833


Q ss_pred             chhhcccCCCccEEEEcCCC
Q 024665          204 PAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       204 ~~~~~~~~~~fD~V~~d~p~  223 (264)
                      ..+   ...+||+|+++.+.
T Consensus       152 ~~~---~~~~fD~Ii~~~~~  168 (235)
T 1jg1_A          152 GFP---PKAPYDVIIVTAGA  168 (235)
T ss_dssp             CCG---GGCCEEEEEECSBB
T ss_pred             CCC---CCCCccEEEECCcH
Confidence            221   12369999998763

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=98.92  E-value=4.9e-09  Score=95.36  Aligned_cols=76  Identities=21%  Similarity=0.198  Sum_probs=60.3

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcccCCCccEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      +.++.+|||+|||+|.++..+++.  +..+|++||+|+ +++.+.+.+..   ..+|+++++|+.+.+   ...++||+|
T Consensus        64 ~~~~~~VLDvGcG~G~~~~~la~~--g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~I  137 (349)
T 3q7e_A           64 LFKDKVVLDVGSGTGILCMFAAKA--GARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVE---LPVEKVDII  137 (349)
T ss_dssp             HHTTCEEEEESCTTSHHHHHHHHT--TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCC---CSSSCEEEE
T ss_pred             cCCCCEEEEEeccchHHHHHHHHC--CCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHcc---CCCCceEEE
Confidence            678899999999999999999987  567999999995 65555444433   235999999999864   234789999


Q ss_pred             EEcCC
Q 024665          218 FSDVA  222 (264)
Q Consensus       218 ~~d~p  222 (264)
                      +++..
T Consensus       138 is~~~  142 (349)
T 3q7e_A          138 ISEWM  142 (349)
T ss_dssp             EECCC
T ss_pred             EEccc
Confidence            99764

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.92  E-value=5.7e-09  Score=92.24  Aligned_cols=81  Identities=21%  Similarity=0.194  Sum_probs=62.7

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc------CCCeEEEEcCCCCchhhcccCCCc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK------RTNVIPIIEDARHPAKYRMLVGMV  214 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~------~~nV~~i~~D~~~~~~~~~~~~~f  214 (264)
                      ..+..+|||+|||+|.++..+++. .+..+|++||+++.+++.+.+....      .++++++++|+.+....  ..++|
T Consensus        76 ~~~~~~VLdiG~G~G~~~~~l~~~-~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~--~~~~f  152 (283)
T 2i7c_A           76 SKEPKNVLVVGGGDGGIIRELCKY-KSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLEN--VTNTY  152 (283)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHH--CCSCE
T ss_pred             CCCCCeEEEEeCCcCHHHHHHHHc-CCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHh--CCCCc
Confidence            345689999999999999999976 3457999999999887665554332      35899999999875432  24689


Q ss_pred             cEEEEcCCCc
Q 024665          215 DVIFSDVAQP  224 (264)
Q Consensus       215 D~V~~d~p~~  224 (264)
                      |+|++|.+.|
T Consensus       153 D~Ii~d~~~~  162 (283)
T 2i7c_A          153 DVIIVDSSDP  162 (283)
T ss_dssp             EEEEEECCCT
T ss_pred             eEEEEcCCCC
Confidence            9999998743

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=98.91  E-value=7.8e-09  Score=93.92  Aligned_cols=84  Identities=23%  Similarity=0.215  Sum_probs=63.0

Q ss_pred             HHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh---cCCCeEEEEcCCCCch
Q 024665          129 AAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK---KRTNVIPIIEDARHPA  205 (264)
Q Consensus       129 ~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~---~~~nV~~i~~D~~~~~  205 (264)
                      ...++..+.   +.++.+|||+|||+|.++..+++.  +..+|++||+|+ +++.+.+...   ...+|++++.|+.+..
T Consensus        39 ~~~i~~~l~---~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~  112 (348)
T 2y1w_A           39 QRAILQNHT---DFKDKIVLDVGCGSGILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS  112 (348)
T ss_dssp             HHHHHHTGG---GTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCC
T ss_pred             HHHHHhccc---cCCcCEEEEcCCCccHHHHHHHhC--CCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCC
Confidence            344444443   678899999999999999999986  456999999996 5444333332   2358999999998864


Q ss_pred             hhcccCCCccEEEEcCC
Q 024665          206 KYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       206 ~~~~~~~~fD~V~~d~p  222 (264)
                          +.++||+|+++.+
T Consensus       113 ----~~~~~D~Ivs~~~  125 (348)
T 2y1w_A          113 ----LPEQVDIIISEPM  125 (348)
T ss_dssp             ----CSSCEEEEEECCC
T ss_pred             ----CCCceeEEEEeCc
Confidence                2368999999865

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=98.91  E-value=2e-09  Score=91.30  Aligned_cols=89  Identities=16%  Similarity=0.040  Sum_probs=65.0

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      ..++.+|||+|||+|.++..+++..   .+|+++|+|+.+++.+.+....  ++++++.|+.++.    ..++||+|++.
T Consensus        40 ~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~--~v~~~~~d~~~~~----~~~~fD~v~~~  110 (250)
T 2p7i_A           40 FFRPGNLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISHAQGRLKD--GITYIHSRFEDAQ----LPRRYDNIVLT  110 (250)
T ss_dssp             GCCSSCEEEESCTTSHHHHHHTTTC---SCEEEEESCHHHHHHHHHHSCS--CEEEEESCGGGCC----CSSCEEEEEEE
T ss_pred             hcCCCcEEEECCCCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhhhC--CeEEEEccHHHcC----cCCcccEEEEh
Confidence            3467889999999999999999763   2799999999886555444332  8999999998762    34689999986


Q ss_pred             CC-----CchHHHHHHH-HHhCCC
Q 024665          221 VA-----QPDQVCFLCL-ILFQPI  238 (264)
Q Consensus       221 ~p-----~~~~~~~~~~-~~l~~~  238 (264)
                      ..     .+........ ..++|+
T Consensus       111 ~~l~~~~~~~~~l~~~~~~~Lkpg  134 (250)
T 2p7i_A          111 HVLEHIDDPVALLKRINDDWLAEG  134 (250)
T ss_dssp             SCGGGCSSHHHHHHHHHHTTEEEE
T ss_pred             hHHHhhcCHHHHHHHHHHHhcCCC
Confidence            54     3444444444 455554

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=98.91  E-value=2.3e-09  Score=92.71  Aligned_cols=100  Identities=13%  Similarity=0.058  Sum_probs=69.3

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      +.++.+|||+|||+|.++..+++.   ..+|+++|+|+.+++.+.+..   .++++++.|+.+++.    .++||+|++.
T Consensus        48 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~---~~~~~~~~d~~~~~~----~~~fD~v~~~  117 (263)
T 3pfg_A           48 SPKAASLLDVACGTGMHLRHLADS---FGTVEGLELSADMLAIARRRN---PDAVLHHGDMRDFSL----GRRFSAVTCM  117 (263)
T ss_dssp             CTTCCEEEEETCTTSHHHHHHTTT---SSEEEEEESCHHHHHHHHHHC---TTSEEEECCTTTCCC----SCCEEEEEEC
T ss_pred             CCCCCcEEEeCCcCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhC---CCCEEEECChHHCCc----cCCcCEEEEc
Confidence            456789999999999999999976   248999999998865544432   389999999988652    5789999987


Q ss_pred             C-CCchHHHHHHHHHhCCCcHHHHHHHHHHhh-cchhhh
Q 024665          221 V-AQPDQVCFLCLILFQPIVINNLQSVNNETK-GGIFEF  257 (264)
Q Consensus       221 ~-p~~~~~~~~~~~~l~~~~~~~l~~~~~~Lk-~g~f~~  257 (264)
                      . .........       .....+.++.+.|+ +|.+.+
T Consensus       118 ~~~l~~~~~~~-------~~~~~l~~~~~~L~pgG~l~i  149 (263)
T 3pfg_A          118 FSSIGHLAGQA-------ELDAALERFAAHVLPDGVVVV  149 (263)
T ss_dssp             TTGGGGSCHHH-------HHHHHHHHHHHTEEEEEEEEE
T ss_pred             CchhhhcCCHH-------HHHHHHHHHHHhcCCCcEEEE
Confidence            5 311100000       12334666667777 555543

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.91  E-value=3.5e-09  Score=92.11  Aligned_cols=88  Identities=16%  Similarity=0.201  Sum_probs=66.1

Q ss_pred             HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchh
Q 024665          127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK  206 (264)
Q Consensus       127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~  206 (264)
                      .++..++..+.   +.++++|||+|||+|.+|..+++.  +..+|++||+|+++++.+.+.  ...|++++++|+.+.+.
T Consensus        18 ~i~~~iv~~~~---~~~~~~VLDiG~G~G~lt~~L~~~--~~~~v~avEid~~~~~~~~~~--~~~~v~~i~~D~~~~~~   90 (249)
T 3ftd_A           18 GVLKKIAEELN---IEEGNTVVEVGGGTGNLTKVLLQH--PLKKLYVIELDREMVENLKSI--GDERLEVINEDASKFPF   90 (249)
T ss_dssp             HHHHHHHHHTT---CCTTCEEEEEESCHHHHHHHHTTS--CCSEEEEECCCHHHHHHHTTS--CCTTEEEECSCTTTCCG
T ss_pred             HHHHHHHHhcC---CCCcCEEEEEcCchHHHHHHHHHc--CCCeEEEEECCHHHHHHHHhc--cCCCeEEEEcchhhCCh
Confidence            45555655544   788999999999999999999986  356999999999886554443  34589999999988642


Q ss_pred             hcccCCCccEEEEcCCC
Q 024665          207 YRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       207 ~~~~~~~fD~V~~d~p~  223 (264)
                      . ..... .+|++|+|.
T Consensus        91 ~-~~~~~-~~vv~NlPy  105 (249)
T 3ftd_A           91 C-SLGKE-LKVVGNLPY  105 (249)
T ss_dssp             G-GSCSS-EEEEEECCT
T ss_pred             h-HccCC-cEEEEECch
Confidence            1 11123 489999994

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=98.91  E-value=3.5e-09  Score=88.43  Aligned_cols=71  Identities=14%  Similarity=0.094  Sum_probs=57.7

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      ++++.+|||+|||+|.++..+++.   ..+|+++|+|+.+++.+.+..    ++.+++.|+.+++    ..++||+|++.
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~----~~~~~~~d~~~~~----~~~~fD~v~~~  109 (211)
T 3e23_A           41 LPAGAKILELGCGAGYQAEAMLAA---GFDVDATDGSPELAAEASRRL----GRPVRTMLFHQLD----AIDAYDAVWAH  109 (211)
T ss_dssp             SCTTCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHH----TSCCEECCGGGCC----CCSCEEEEEEC
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHc---CCeEEEECCCHHHHHHHHHhc----CCceEEeeeccCC----CCCcEEEEEec
Confidence            568899999999999999999986   348999999998765544433    6788899987765    35789999997


Q ss_pred             CC
Q 024665          221 VA  222 (264)
Q Consensus       221 ~p  222 (264)
                      ..
T Consensus       110 ~~  111 (211)
T 3e23_A          110 AC  111 (211)
T ss_dssp             SC
T ss_pred             Cc
Confidence            65

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.90  E-value=1.1e-09  Score=95.42  Aligned_cols=91  Identities=9%  Similarity=0.066  Sum_probs=63.8

Q ss_pred             HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchh
Q 024665          127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK  206 (264)
Q Consensus       127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~  206 (264)
                      .++..++..+.   +.++++|||+|||+|.+|. ++ .. ...+|++||+|+++++.+.+......|++++++|+.+.+.
T Consensus         8 ~i~~~iv~~~~---~~~~~~VLEIG~G~G~lt~-l~-~~-~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~   81 (252)
T 1qyr_A            8 FVIDSIVSAIN---PQKGQAMVEIGPGLAALTE-PV-GE-RLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNF   81 (252)
T ss_dssp             HHHHHHHHHHC---CCTTCCEEEECCTTTTTHH-HH-HT-TCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCH
T ss_pred             HHHHHHHHhcC---CCCcCEEEEECCCCcHHHH-hh-hC-CCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCH
Confidence            45555555444   7899999999999999999 65 32 2233999999998876554433323489999999987542


Q ss_pred             hccc--CCCccEEEEcCCC
Q 024665          207 YRML--VGMVDVIFSDVAQ  223 (264)
Q Consensus       207 ~~~~--~~~fD~V~~d~p~  223 (264)
                      ....  ....|+|++|+|.
T Consensus        82 ~~~~~~~~~~~~vvsNlPY  100 (252)
T 1qyr_A           82 GELAEKMGQPLRVFGNLPY  100 (252)
T ss_dssp             HHHHHHHTSCEEEEEECCT
T ss_pred             HHhhcccCCceEEEECCCC
Confidence            1111  1245899999994

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=98.90  E-value=9e-09  Score=86.64  Aligned_cols=76  Identities=13%  Similarity=0.122  Sum_probs=60.8

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC-------CeEEEEcCCCCchhhcccCCC
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT-------NVIPIIEDARHPAKYRMLVGM  213 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~-------nV~~i~~D~~~~~~~~~~~~~  213 (264)
                      ++++.+|||+|||+|.++..++..   ..+|+++|+|+.+++.+.+......       ++++++.|+.+++   ...++
T Consensus        28 ~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~  101 (235)
T 3sm3_A           28 LQEDDEILDIGCGSGKISLELASK---GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLS---FHDSS  101 (235)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCC---SCTTC
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccC---CCCCc
Confidence            568899999999999999999987   3489999999988766555543321       5899999998764   23578


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      ||+|++...
T Consensus       102 ~D~v~~~~~  110 (235)
T 3sm3_A          102 FDFAVMQAF  110 (235)
T ss_dssp             EEEEEEESC
T ss_pred             eeEEEEcch
Confidence            999998765

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.90  E-value=5e-09  Score=90.87  Aligned_cols=74  Identities=15%  Similarity=0.182  Sum_probs=58.8

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcC
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDV  221 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~  221 (264)
                      .++.+|||+|||+|.++..+++.+ +..+|+++|+|+.+++.+.+.   ..++.+++.|+.+.+   ...++||+|++..
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~---~~~~~~~~~d~~~~~---~~~~~fD~v~~~~  156 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKR---YPQVTFCVASSHRLP---FSDTSMDAIIRIY  156 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHH---CTTSEEEECCTTSCS---BCTTCEEEEEEES
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHh---CCCcEEEEcchhhCC---CCCCceeEEEEeC
Confidence            678999999999999999999875 456999999999876544332   257899999998754   2346899999864


Q ss_pred             C
Q 024665          222 A  222 (264)
Q Consensus       222 p  222 (264)
                      .
T Consensus       157 ~  157 (269)
T 1p91_A          157 A  157 (269)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=98.90  E-value=1.6e-09  Score=92.63  Aligned_cols=98  Identities=14%  Similarity=0.098  Sum_probs=68.0

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHh---hcCCCeEEEEcCCCCchh-hcccC--CCc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA---KKRTNVIPIIEDARHPAK-YRMLV--GMV  214 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a---~~~~nV~~i~~D~~~~~~-~~~~~--~~f  214 (264)
                      +.+..+|||+|||+|..++.++..+.+.++|+++|+++.+++.+.+..   ....+|+++++|+.+..+ .....  ++|
T Consensus        70 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~f  149 (232)
T 3cbg_A           70 LTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEF  149 (232)
T ss_dssp             HHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCE
T ss_pred             hcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCc
Confidence            456789999999999999999998765789999999987755444433   222479999999876432 11112  689


Q ss_pred             cEEEEcCCCc--hHHHHHHHHHhCCC
Q 024665          215 DVIFSDVAQP--DQVCFLCLILFQPI  238 (264)
Q Consensus       215 D~V~~d~p~~--~~~~~~~~~~l~~~  238 (264)
                      |+|++|.+.+  ..........++|+
T Consensus       150 D~V~~d~~~~~~~~~l~~~~~~Lkpg  175 (232)
T 3cbg_A          150 DLIFIDADKRNYPRYYEIGLNLLRRG  175 (232)
T ss_dssp             EEEEECSCGGGHHHHHHHHHHTEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHHHcCCC
Confidence            9999998733  23333344444444

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=98.90  E-value=2.1e-09  Score=86.68  Aligned_cols=70  Identities=11%  Similarity=0.180  Sum_probs=56.5

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      ++++.+|||+|||+|.++..+++..   .+|+++|+++.+++.+.+.   .+++++++.| ..     ...++||+|++.
T Consensus        15 ~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~---~~~v~~~~~d-~~-----~~~~~~D~v~~~   82 (170)
T 3i9f_A           15 EGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEK---FDSVITLSDP-KE-----IPDNSVDFILFA   82 (170)
T ss_dssp             SSCCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHH---CTTSEEESSG-GG-----SCTTCEEEEEEE
T ss_pred             cCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHh---CCCcEEEeCC-CC-----CCCCceEEEEEc
Confidence            7889999999999999999999875   2899999999876554443   4589999999 21     234689999987


Q ss_pred             CC
Q 024665          221 VA  222 (264)
Q Consensus       221 ~p  222 (264)
                      ..
T Consensus        83 ~~   84 (170)
T 3i9f_A           83 NS   84 (170)
T ss_dssp             SC
T ss_pred             cc
Confidence            65

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.90  E-value=4.6e-09  Score=87.09  Aligned_cols=71  Identities=10%  Similarity=0.002  Sum_probs=56.8

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      ++.+|||+|||+|.++..+++.   ..+|+++|+|+.+++.+.+.   ..++++++.|+.+++   ...++||+|++...
T Consensus        41 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~---~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~  111 (203)
T 3h2b_A           41 VDGVILDVGSGTGRWTGHLASL---GHQIEGLEPATRLVELARQT---HPSVTFHHGTITDLS---DSPKRWAGLLAWYS  111 (203)
T ss_dssp             CCSCEEEETCTTCHHHHHHHHT---TCCEEEECCCHHHHHHHHHH---CTTSEEECCCGGGGG---GSCCCEEEEEEESS
T ss_pred             CCCeEEEecCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHh---CCCCeEEeCcccccc---cCCCCeEEEEehhh
Confidence            3789999999999999999987   34899999999876544332   348999999998764   23578999998654

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.90  E-value=2.3e-09  Score=98.83  Aligned_cols=93  Identities=12%  Similarity=-0.093  Sum_probs=67.5

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC-----------------CCeEEEEcCCCCch
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-----------------TNVIPIIEDARHPA  205 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~-----------------~nV~~i~~D~~~~~  205 (264)
                      ++.+|||+|||+|.+++.+|..++ ..+|+++|+++.+++.+.+++..+                 .+|++++.|+.++.
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~-~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~  125 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM  125 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHH
Confidence            688999999999999999999864 458999999987754444433322                 25999999998765


Q ss_pred             hhcccCCCccEEEEcCCCc-hHHHHHHHHHhCCC
Q 024665          206 KYRMLVGMVDVIFSDVAQP-DQVCFLCLILFQPI  238 (264)
Q Consensus       206 ~~~~~~~~fD~V~~d~p~~-~~~~~~~~~~l~~~  238 (264)
                      ..  ....||+|++|++.. ......++..+++.
T Consensus       126 ~~--~~~~fD~I~lDP~~~~~~~l~~a~~~lk~g  157 (378)
T 2dul_A          126 AE--RHRYFHFIDLDPFGSPMEFLDTALRSAKRR  157 (378)
T ss_dssp             HH--STTCEEEEEECCSSCCHHHHHHHHHHEEEE
T ss_pred             Hh--ccCCCCEEEeCCCCCHHHHHHHHHHhcCCC
Confidence            32  235799999999843 44444455555543

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.89  E-value=1.3e-09  Score=101.32  Aligned_cols=79  Identities=15%  Similarity=0.099  Sum_probs=61.4

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC----CCeEEEEcCCCCchhhcccCCCccE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR----TNVIPIIEDARHPAKYRMLVGMVDV  216 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~----~nV~~i~~D~~~~~~~~~~~~~fD~  216 (264)
                      ++++.+|||+|||+|..++.+|..   ..+|++||+|+.+++.+.+++...    .||+++++|+.+.... ....+||+
T Consensus        91 l~~g~~VLDLgcG~G~~al~LA~~---g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~-~~~~~fDv  166 (410)
T 3ll7_A           91 IREGTKVVDLTGGLGIDFIALMSK---ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPL-IKTFHPDY  166 (410)
T ss_dssp             SCTTCEEEESSCSSSHHHHHHHTT---CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHH-HHHHCCSE
T ss_pred             cCCCCEEEEeCCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhh-ccCCCceE
Confidence            446899999999999999999876   359999999998865555444322    4899999999885321 11248999


Q ss_pred             EEEcCCC
Q 024665          217 IFSDVAQ  223 (264)
Q Consensus       217 V~~d~p~  223 (264)
                      |++|||.
T Consensus       167 V~lDPPr  173 (410)
T 3ll7_A          167 IYVDPAR  173 (410)
T ss_dssp             EEECCEE
T ss_pred             EEECCCC
Confidence            9999994

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=98.89  E-value=2.4e-09  Score=98.89  Aligned_cols=80  Identities=20%  Similarity=0.142  Sum_probs=63.2

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC---CeEEEEcCCCCchhh-cccCCCccEE
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT---NVIPIIEDARHPAKY-RMLVGMVDVI  217 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~---nV~~i~~D~~~~~~~-~~~~~~fD~V  217 (264)
                      +++++|||+|||+|.+++.+|..  +..+|+++|+|+.+++.+.+++..+.   |++++++|+.+.... .....+||+|
T Consensus       216 ~~~~~VLDl~~G~G~~~~~la~~--g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V  293 (396)
T 2as0_A          216 QPGDRVLDVFTYTGGFAIHAAIA--GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIV  293 (396)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             hCCCeEEEecCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEE
Confidence            48899999999999999999986  45699999999988766665554432   899999999875431 1114589999


Q ss_pred             EEcCCC
Q 024665          218 FSDVAQ  223 (264)
Q Consensus       218 ~~d~p~  223 (264)
                      ++|+|.
T Consensus       294 i~dpP~  299 (396)
T 2as0_A          294 VLDPPA  299 (396)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999994

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.89  E-value=4.2e-09  Score=87.52  Aligned_cols=77  Identities=14%  Similarity=0.066  Sum_probs=58.4

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      +.++.+|||+|||+|.+++.++..  +..+|+++|+|+.+++.+.+.+.. ..++++++.|+.+.+   ...++||+|++
T Consensus        21 ~~~~~~vLDiGcG~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD~v~~   95 (209)
T 2p8j_A           21 SNLDKTVLDCGAGGDLPPLSIFVE--DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLP---FKDESMSFVYS   95 (209)
T ss_dssp             SSSCSEEEEESCCSSSCTHHHHHH--TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCC---SCTTCEEEEEE
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHh--CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCC---CCCCceeEEEE
Confidence            567899999999999986655544  346999999999887665554432 358999999998754   23468999998


Q ss_pred             cCC
Q 024665          220 DVA  222 (264)
Q Consensus       220 d~p  222 (264)
                      ...
T Consensus        96 ~~~   98 (209)
T 2p8j_A           96 YGT   98 (209)
T ss_dssp             CSC
T ss_pred             cCh
Confidence            644

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=98.88  E-value=1.2e-08  Score=91.95  Aligned_cols=80  Identities=21%  Similarity=0.202  Sum_probs=62.2

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc------CCCeEEEEcCCCCchhhcccCCCcc
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK------RTNVIPIIEDARHPAKYRMLVGMVD  215 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~------~~nV~~i~~D~~~~~~~~~~~~~fD  215 (264)
                      .+..+|||+|||+|.++..+++.. +..+|++||+|+.+++.+.+....      .++++++++|+.+....  ..++||
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~--~~~~fD  191 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLEN--VTNTYD  191 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHH--CCSCEE
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhh--cCCCce
Confidence            355799999999999999999763 457999999999887665555432      35899999999775421  346899


Q ss_pred             EEEEcCCCc
Q 024665          216 VIFSDVAQP  224 (264)
Q Consensus       216 ~V~~d~p~~  224 (264)
                      +|++|++.|
T Consensus       192 vIi~d~~~p  200 (321)
T 2pt6_A          192 VIIVDSSDP  200 (321)
T ss_dssp             EEEEECCCS
T ss_pred             EEEECCcCC
Confidence            999998643

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.88  E-value=1.1e-08  Score=83.43  Aligned_cols=73  Identities=15%  Similarity=0.053  Sum_probs=57.9

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      ++++.+|||+|||+|.++..++..   ..+|+++|+++.+++.+.+..   .++++++.|+.+.+   ...++||+|+++
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~~~~~~~~a~~~~---~~~~~~~~d~~~~~---~~~~~~D~i~~~  114 (195)
T 3cgg_A           44 APRGAKILDAGCGQGRIGGYLSKQ---GHDVLGTDLDPILIDYAKQDF---PEARWVVGDLSVDQ---ISETDFDLIVSA  114 (195)
T ss_dssp             SCTTCEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHC---TTSEEEECCTTTSC---CCCCCEEEEEEC
T ss_pred             ccCCCeEEEECCCCCHHHHHHHHC---CCcEEEEcCCHHHHHHHHHhC---CCCcEEEcccccCC---CCCCceeEEEEC
Confidence            568899999999999999999987   348999999997764443322   47999999998754   224689999997


Q ss_pred             CC
Q 024665          221 VA  222 (264)
Q Consensus       221 ~p  222 (264)
                      .+
T Consensus       115 ~~  116 (195)
T 3cgg_A          115 GN  116 (195)
T ss_dssp             CC
T ss_pred             Cc
Confidence            43

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.88  E-value=8.3e-09  Score=90.88  Aligned_cols=79  Identities=15%  Similarity=0.118  Sum_probs=61.1

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh-----c-CCCeEEEEcCCCCchhhcccCCCccE
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK-----K-RTNVIPIIEDARHPAKYRMLVGMVDV  216 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~-----~-~~nV~~i~~D~~~~~~~~~~~~~fD~  216 (264)
                      +..+|||+|||+|.++..++... +..+|++||+++.+++.+.+...     . .++++++++|+.+....  ..++||+
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~--~~~~fD~  151 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAK--SENQYDV  151 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHT--CCSCEEE
T ss_pred             CCCEEEEECCchHHHHHHHHhCC-CCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhh--CCCCeeE
Confidence            45799999999999999998763 45699999999988655544321     1 35899999999875431  3468999


Q ss_pred             EEEcCCCc
Q 024665          217 IFSDVAQP  224 (264)
Q Consensus       217 V~~d~p~~  224 (264)
                      |++|++.|
T Consensus       152 Ii~d~~~~  159 (275)
T 1iy9_A          152 IMVDSTEP  159 (275)
T ss_dssp             EEESCSSC
T ss_pred             EEECCCCC
Confidence            99999854

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=98.87  E-value=8e-09  Score=93.10  Aligned_cols=76  Identities=14%  Similarity=0.110  Sum_probs=58.9

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh---cCCCeEEEEcCCCCchhhcccCCCccEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK---KRTNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~---~~~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      +.++.+|||+|||+|.++..+++.  +..+|+++|+|+ +++.+.+...   ...+|++++.|+.+..   ...++||+|
T Consensus        36 ~~~~~~VLDiGcGtG~ls~~la~~--g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~I  109 (328)
T 1g6q_1           36 LFKDKIVLDVGCGTGILSMFAAKH--GAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVH---LPFPKVDII  109 (328)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHT--CCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSC---CSSSCEEEE
T ss_pred             hcCCCEEEEecCccHHHHHHHHHC--CCCEEEEEChHH-HHHHHHHHHHHcCCCCCEEEEECchhhcc---CCCCcccEE
Confidence            567889999999999999999986  456999999994 5544444333   2347999999998864   123689999


Q ss_pred             EEcCC
Q 024665          218 FSDVA  222 (264)
Q Consensus       218 ~~d~p  222 (264)
                      +++.+
T Consensus       110 vs~~~  114 (328)
T 1g6q_1          110 ISEWM  114 (328)
T ss_dssp             EECCC
T ss_pred             EEeCc
Confidence            99865

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=98.87  E-value=3.4e-09  Score=97.91  Aligned_cols=80  Identities=16%  Similarity=-0.020  Sum_probs=62.1

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---C-CeEEEEcCCCCchhh-cccCCCccE
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---T-NVIPIIEDARHPAKY-RMLVGMVDV  216 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~-nV~~i~~D~~~~~~~-~~~~~~fD~  216 (264)
                      .++.+|||+|||+|.+++++|..  ...+|++||+|+.+++.+.+++..+   . |++++++|+.+.... .....+||+
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~--g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~  296 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDV  296 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             hCCCeEEEeeccCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCE
Confidence            57899999999999999999986  3569999999988866655544322   2 899999999876431 111358999


Q ss_pred             EEEcCCC
Q 024665          217 IFSDVAQ  223 (264)
Q Consensus       217 V~~d~p~  223 (264)
                      |++|+|.
T Consensus       297 Ii~dpP~  303 (396)
T 3c0k_A          297 IVMDPPK  303 (396)
T ss_dssp             EEECCSS
T ss_pred             EEECCCC
Confidence            9999984

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.87  E-value=6.9e-09  Score=86.52  Aligned_cols=86  Identities=17%  Similarity=0.098  Sum_probs=61.9

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcC
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDV  221 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~  221 (264)
                      .++.+|||+|||+|.++..+     ...+|+++|+|+.+++.+.+..   .++++++.|+.+.+   ...++||+|++..
T Consensus        35 ~~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~d~~~~~---~~~~~fD~v~~~~  103 (211)
T 2gs9_A           35 PPGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRA---PEATWVRAWGEALP---FPGESFDVVLLFT  103 (211)
T ss_dssp             CCCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHC---TTSEEECCCTTSCC---SCSSCEEEEEEES
T ss_pred             CCCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhC---CCcEEEEcccccCC---CCCCcEEEEEEcC
Confidence            38899999999999999887     2238999999998765544433   58999999998754   2346899999875


Q ss_pred             C-----CchHHHHHHHHHhCCC
Q 024665          222 A-----QPDQVCFLCLILFQPI  238 (264)
Q Consensus       222 p-----~~~~~~~~~~~~l~~~  238 (264)
                      .     .+........+.++|.
T Consensus       104 ~l~~~~~~~~~l~~~~~~L~pg  125 (211)
T 2gs9_A          104 TLEFVEDVERVLLEARRVLRPG  125 (211)
T ss_dssp             CTTTCSCHHHHHHHHHHHEEEE
T ss_pred             hhhhcCCHHHHHHHHHHHcCCC
Confidence            5     2334444444555554

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.87  E-value=7.7e-09  Score=92.00  Aligned_cols=93  Identities=16%  Similarity=0.080  Sum_probs=64.4

Q ss_pred             HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---------CCCeEEE
Q 024665          127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---------RTNVIPI  197 (264)
Q Consensus       127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---------~~nV~~i  197 (264)
                      .++..++..+.. .+.++.+|||+|||+|.++..++..  +..+|+++|+|+.+++.+.+....         ..+++++
T Consensus        19 ~l~~~~~~~l~~-~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~   95 (313)
T 3bgv_A           19 VLIGEFLEKVRQ-KKKRDITVLDLGCGKGGDLLKWKKG--RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFI   95 (313)
T ss_dssp             HHHHHHHHHHHH-TC--CCEEEEETCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEE
T ss_pred             HHHHHHHHHhhh-ccCCCCEEEEECCCCcHHHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEE
Confidence            444444443331 2347889999999999999999974  466999999999887655554332         2379999


Q ss_pred             EcCCCCch---hhcccCCCccEEEEcCC
Q 024665          198 IEDARHPA---KYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       198 ~~D~~~~~---~~~~~~~~fD~V~~d~p  222 (264)
                      +.|+.+.+   .+....++||+|++...
T Consensus        96 ~~D~~~~~~~~~~~~~~~~fD~V~~~~~  123 (313)
T 3bgv_A           96 TADSSKELLIDKFRDPQMCFDICSCQFV  123 (313)
T ss_dssp             ECCTTTSCSTTTCSSTTCCEEEEEEETC
T ss_pred             EecccccchhhhcccCCCCEEEEEEecc
Confidence            99998764   11112348999998765

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.87  E-value=1.6e-09  Score=94.32  Aligned_cols=81  Identities=14%  Similarity=0.115  Sum_probs=57.6

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC----------------------------
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR----------------------------  191 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~----------------------------  191 (264)
                      ...++.+|||||||+|.+++.++..  ...+|+|+|+|+.|++.+.+.+...                            
T Consensus        52 ~~~~g~~vLDiGCG~G~~~~~~~~~--~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~  129 (263)
T 2a14_A           52 GGLQGDTLIDIGSGPTIYQVLAACD--SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEE  129 (263)
T ss_dssp             TSCCEEEEEESSCTTCCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             CCCCCceEEEeCCCccHHHHHHHHh--hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHH
Confidence            4668899999999999988877654  2347999999998877655443221                            


Q ss_pred             ---CCeE-EEEcCCCCchhhc-ccCCCccEEEEcCC
Q 024665          192 ---TNVI-PIIEDARHPAKYR-MLVGMVDVIFSDVA  222 (264)
Q Consensus       192 ---~nV~-~i~~D~~~~~~~~-~~~~~fD~V~~d~p  222 (264)
                         .+|+ +++.|+.+..+.. ...++||+|++...
T Consensus       130 ~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~  165 (263)
T 2a14_A          130 KLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLA  165 (263)
T ss_dssp             HHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESC
T ss_pred             HHHhhhheEEeccccCCCCCCccccCCCCEeeehHH
Confidence               1354 8999998853321 12458999999754

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=98.87  E-value=5.2e-09  Score=93.90  Aligned_cols=81  Identities=20%  Similarity=0.203  Sum_probs=62.8

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc-------CCCeEEEEcCCCCchhhcccCCCc
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-------RTNVIPIIEDARHPAKYRMLVGMV  214 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~-------~~nV~~i~~D~~~~~~~~~~~~~f  214 (264)
                      .+..+|||||||+|.++..+++.. +..+|++||+++.+++.+.+....       .++++++++|+.+....  ..++|
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~--~~~~f  152 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER--TEERY  152 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH--CCCCE
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHh--cCCCc
Confidence            455799999999999999999863 456999999999887655544321       45899999999875432  35689


Q ss_pred             cEEEEcCCCch
Q 024665          215 DVIFSDVAQPD  225 (264)
Q Consensus       215 D~V~~d~p~~~  225 (264)
                      |+|++|.+.+.
T Consensus       153 D~Ii~d~~~~~  163 (314)
T 1uir_A          153 DVVIIDLTDPV  163 (314)
T ss_dssp             EEEEEECCCCB
T ss_pred             cEEEECCCCcc
Confidence            99999988654

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=98.87  E-value=8.6e-09  Score=97.76  Aligned_cols=75  Identities=23%  Similarity=0.214  Sum_probs=59.4

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh---cCCCeEEEEcCCCCchhhcccCCCccEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK---KRTNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~---~~~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      ..++.+|||+|||+|.+++.+++.  +..+|+++|+|+ +++.+.+.+.   ...+|+++++|+.+..    +.++||+|
T Consensus       156 ~~~~~~VLDiGcGtG~la~~la~~--~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~----~~~~fD~I  228 (480)
T 3b3j_A          156 DFKDKIVLDVGCGSGILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS----LPEQVDII  228 (480)
T ss_dssp             GTTTCEEEEESCSTTHHHHHHHHT--TCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCC----CSSCEEEE
T ss_pred             hcCCCEEEEecCcccHHHHHHHHc--CCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCc----cCCCeEEE
Confidence            567899999999999999999874  567999999998 6544443333   2358999999998853    23689999


Q ss_pred             EEcCC
Q 024665          218 FSDVA  222 (264)
Q Consensus       218 ~~d~p  222 (264)
                      +++++
T Consensus       229 vs~~~  233 (480)
T 3b3j_A          229 ISEPM  233 (480)
T ss_dssp             ECCCC
T ss_pred             EEeCc
Confidence            99877

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=98.86  E-value=3.2e-09  Score=97.70  Aligned_cols=78  Identities=21%  Similarity=0.071  Sum_probs=62.1

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhh-cccCCCccEEEE
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKY-RMLVGMVDVIFS  219 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~-~~~~~~fD~V~~  219 (264)
                      ++++|||+|||+|.+++++|..   ..+|+++|+|+.+++.+.+++..+  .|++++++|+.+.... .....+||+|++
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~  285 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL  285 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEE
Confidence            7889999999999999999987   358999999998876666555443  3699999999876431 111468999999


Q ss_pred             cCCC
Q 024665          220 DVAQ  223 (264)
Q Consensus       220 d~p~  223 (264)
                      |+|.
T Consensus       286 dpP~  289 (382)
T 1wxx_A          286 DPPA  289 (382)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9984

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=98.85  E-value=3.2e-09  Score=96.22  Aligned_cols=77  Identities=13%  Similarity=0.078  Sum_probs=60.8

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC-CCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~-~nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      ..++.+|||+|||+|.++..++... +..+|+++|+|+.+++...+..... .++++++.|+.+..     .++||+|++
T Consensus       194 ~~~~~~VLDlGcG~G~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~-----~~~fD~Iv~  267 (343)
T 2pjd_A          194 PHTKGKVLDVGCGAGVLSVAFARHS-PKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEV-----KGRFDMIIS  267 (343)
T ss_dssp             TTCCSBCCBTTCTTSHHHHHHHHHC-TTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTC-----CSCEEEEEE
T ss_pred             cCCCCeEEEecCccCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccc-----cCCeeEEEE
Confidence            4567799999999999999999884 5668999999998876655554432 25778899987642     468999999


Q ss_pred             cCCC
Q 024665          220 DVAQ  223 (264)
Q Consensus       220 d~p~  223 (264)
                      ++|.
T Consensus       268 ~~~~  271 (343)
T 2pjd_A          268 NPPF  271 (343)
T ss_dssp             CCCC
T ss_pred             CCCc
Confidence            9884

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.85  E-value=1.1e-09  Score=95.79  Aligned_cols=81  Identities=15%  Similarity=0.112  Sum_probs=58.8

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCCh-------HHHHHHHHHhh---cCCCeEEEEcCCCCchhhccc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSH-------RSGRDLVNMAK---KRTNVIPIIEDARHPAKYRML  210 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~-------~~~~~l~~~a~---~~~nV~~i~~D~~~~~~~~~~  210 (264)
                      +.++.+|||+|||+|.+++.+|..   .++|+++|+|+       .+++.+.+++.   ...+|+++++|+.+..+. ..
T Consensus        81 ~~~~~~VLDlgcG~G~~a~~lA~~---g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~-~~  156 (258)
T 2r6z_A           81 HTAHPTVWDATAGLGRDSFVLASL---GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPA-LV  156 (258)
T ss_dssp             GGGCCCEEETTCTTCHHHHHHHHT---TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHH-HH
T ss_pred             cCCcCeEEEeeCccCHHHHHHHHh---CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHh-hh
Confidence            567789999999999999999986   35899999999       65444332221   122499999999875321 11


Q ss_pred             C--CCccEEEEcCCCch
Q 024665          211 V--GMVDVIFSDVAQPD  225 (264)
Q Consensus       211 ~--~~fD~V~~d~p~~~  225 (264)
                      .  ++||+|++|++.+.
T Consensus       157 ~~~~~fD~V~~dP~~~~  173 (258)
T 2r6z_A          157 KTQGKPDIVYLDPMYPE  173 (258)
T ss_dssp             HHHCCCSEEEECCCC--
T ss_pred             ccCCCccEEEECCCCCC
Confidence            2  58999999998544

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.85  E-value=1.3e-08  Score=88.93  Aligned_cols=78  Identities=26%  Similarity=0.204  Sum_probs=62.1

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCCCchhhcccCCCccEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      +.++.+|||+|||+|.++..++..  +..+|+++|+|+.+++.+.+.....   .++++++.|+.+.+.  ...++||+|
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~~fD~v  137 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKGGDLLKYERA--GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHM--DLGKEFDVI  137 (298)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHH--TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCC--CCSSCEEEE
T ss_pred             CCCCCeEEEECCCCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCcccccc--CCCCCcCEE
Confidence            678999999999999999999887  4569999999998876666555433   369999999987641  124689999


Q ss_pred             EEcCC
Q 024665          218 FSDVA  222 (264)
Q Consensus       218 ~~d~p  222 (264)
                      +++..
T Consensus       138 ~~~~~  142 (298)
T 1ri5_A          138 SSQFS  142 (298)
T ss_dssp             EEESC
T ss_pred             EECch
Confidence            98755

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.84  E-value=9e-09  Score=87.83  Aligned_cols=85  Identities=14%  Similarity=0.105  Sum_probs=61.7

Q ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCch
Q 024665          126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPA  205 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~  205 (264)
                      ..+...+...+.  .++++.+|||+|||+|.++..+++.   ..+|+++|+|+.++    +.+..+  +++++.|+.+..
T Consensus        26 ~~~~~~~~~~l~--~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~----~~a~~~--~~~~~~d~~~~~   94 (240)
T 3dli_A           26 ELVKARLRRYIP--YFKGCRRVLDIGCGRGEFLELCKEE---GIESIGVDINEDMI----KFCEGK--FNVVKSDAIEYL   94 (240)
T ss_dssp             HHHHHHHGGGGG--GTTTCSCEEEETCTTTHHHHHHHHH---TCCEEEECSCHHHH----HHHHTT--SEEECSCHHHHH
T ss_pred             HHHHHHHHHHHh--hhcCCCeEEEEeCCCCHHHHHHHhC---CCcEEEEECCHHHH----HHHHhh--cceeeccHHHHh
Confidence            344444544444  4678899999999999999999987   33799999998664    444333  889999987743


Q ss_pred             hhcccCCCccEEEEcCC
Q 024665          206 KYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       206 ~~~~~~~~fD~V~~d~p  222 (264)
                      . ....++||+|++...
T Consensus        95 ~-~~~~~~fD~i~~~~~  110 (240)
T 3dli_A           95 K-SLPDKYLDGVMISHF  110 (240)
T ss_dssp             H-TSCTTCBSEEEEESC
T ss_pred             h-hcCCCCeeEEEECCc
Confidence            1 123578999998654

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.84  E-value=2.6e-09  Score=93.52  Aligned_cols=79  Identities=15%  Similarity=0.072  Sum_probs=59.7

Q ss_pred             CCCC--CEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHH---HHHHHHHhhc--------CCCeEEEEcCCCCchhh
Q 024665          141 IKPG--ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRS---GRDLVNMAKK--------RTNVIPIIEDARHPAKY  207 (264)
Q Consensus       141 l~~g--~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~---~~~l~~~a~~--------~~nV~~i~~D~~~~~~~  207 (264)
                      ++++  .+|||++||+|..++.+|..   .++|++||+++.+   +++.++.+..        ..||+++++|+.+..+.
T Consensus        84 l~~g~~~~VLDl~~G~G~dal~lA~~---g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~  160 (258)
T 2oyr_A           84 IKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD  160 (258)
T ss_dssp             CBTTBCCCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTT
T ss_pred             ccCCCCCEEEEcCCcCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHh
Confidence            6677  89999999999999999998   3479999999865   3333433321        13699999999875432


Q ss_pred             cccCCCccEEEEcCCCc
Q 024665          208 RMLVGMVDVIFSDVAQP  224 (264)
Q Consensus       208 ~~~~~~fD~V~~d~p~~  224 (264)
                        ....||+|++||+.+
T Consensus       161 --~~~~fDvV~lDP~y~  175 (258)
T 2oyr_A          161 --ITPRPQVVYLDPMFP  175 (258)
T ss_dssp             --CSSCCSEEEECCCCC
T ss_pred             --CcccCCEEEEcCCCC
Confidence              234799999999843

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.84  E-value=9.6e-09  Score=85.06  Aligned_cols=75  Identities=16%  Similarity=0.203  Sum_probs=58.7

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      ++++ +|||+|||+|.++..++..   ..+|+++|+|+.+++.+.+.... ..++.+++.|+.+.+   ...++||+|++
T Consensus        28 ~~~~-~vLdiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD~v~~  100 (202)
T 2kw5_A           28 IPQG-KILCLAEGEGRNACFLASL---GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFD---IVADAWEGIVS  100 (202)
T ss_dssp             SCSS-EEEECCCSCTHHHHHHHTT---TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBS---CCTTTCSEEEE
T ss_pred             CCCC-CEEEECCCCCHhHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcC---CCcCCccEEEE
Confidence            5577 9999999999999999876   34899999999887665554432 238999999998764   23468999998


Q ss_pred             cCC
Q 024665          220 DVA  222 (264)
Q Consensus       220 d~p  222 (264)
                      ...
T Consensus       101 ~~~  103 (202)
T 2kw5_A          101 IFC  103 (202)
T ss_dssp             ECC
T ss_pred             Ehh
Confidence            654

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=98.83  E-value=3e-08  Score=87.26  Aligned_cols=107  Identities=14%  Similarity=0.065  Sum_probs=68.8

Q ss_pred             chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeC-ChHHHHHHHHHh-----hcC-------
Q 024665          125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEF-SHRSGRDLVNMA-----KKR-------  191 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~-s~~~~~~l~~~a-----~~~-------  191 (264)
                      ...++..++....   +.++.+|||||||+|.+++.++..  ...+|+++|+ |+.+++.+.+++     ...       
T Consensus        64 ~~~l~~~l~~~~~---~~~~~~vLDlG~G~G~~~~~~a~~--~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~  138 (281)
T 3bzb_A           64 ARALADTLCWQPE---LIAGKTVCELGAGAGLVSIVAFLA--GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKR  138 (281)
T ss_dssp             HHHHHHHHHHCGG---GTTTCEEEETTCTTSHHHHHHHHT--TCSEEEEEECSCHHHHHHHHHHHHTTCC----------
T ss_pred             HHHHHHHHHhcch---hcCCCeEEEecccccHHHHHHHHc--CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCC
Confidence            3445555554332   567889999999999999998875  3458999999 888876555544     221       


Q ss_pred             CCeEEEEcCCCCchh-hcc--cCCCccEEEE-cCCC----chHHHHHHHHHhC
Q 024665          192 TNVIPIIEDARHPAK-YRM--LVGMVDVIFS-DVAQ----PDQVCFLCLILFQ  236 (264)
Q Consensus       192 ~nV~~i~~D~~~~~~-~~~--~~~~fD~V~~-d~p~----~~~~~~~~~~~l~  236 (264)
                      .+|+++..|..+... ...  ...+||+|++ |+..    ...........++
T Consensus       139 ~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk  191 (281)
T 3bzb_A          139 ASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLA  191 (281)
T ss_dssp             CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBC
T ss_pred             CCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhc
Confidence            368888777655321 100  2468999997 7663    2233344445566

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.83  E-value=1.4e-08  Score=101.16  Aligned_cols=89  Identities=11%  Similarity=0.039  Sum_probs=66.7

Q ss_pred             HHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh--------cCCCeEEEEc
Q 024665          128 LAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK--------KRTNVIPIIE  199 (264)
Q Consensus       128 l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~--------~~~nV~~i~~  199 (264)
                      ....++..+.   ..++.+|||||||+|.++..|++...+..+|++||+|+.+++.+.+...        ...+|+++++
T Consensus       709 Rle~LLelL~---~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqG  785 (950)
T 3htx_A          709 RVEYALKHIR---ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDG  785 (950)
T ss_dssp             HHHHHHHHHH---HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEES
T ss_pred             HHHHHHHHhc---ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEEC
Confidence            3444444443   5588999999999999999999875445699999999988766544221        1237999999


Q ss_pred             CCCCchhhcccCCCccEEEEcCC
Q 024665          200 DARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       200 D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      |+.+++.   ..+.||+|++...
T Consensus       786 Da~dLp~---~d~sFDlVV~~eV  805 (950)
T 3htx_A          786 SILEFDS---RLHDVDIGTCLEV  805 (950)
T ss_dssp             CTTSCCT---TSCSCCEEEEESC
T ss_pred             chHhCCc---ccCCeeEEEEeCc
Confidence            9998653   3578999998765

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=98.83  E-value=7.3e-09  Score=87.92  Aligned_cols=73  Identities=25%  Similarity=0.239  Sum_probs=58.6

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      ++++.+|||+|||+|.++..+++.    .+|+++|+|+.+++.+.+.... ..++++++.|+.+.+    ..++||+|++
T Consensus        31 ~~~~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~----~~~~fD~v~~  102 (243)
T 3d2l_A           31 VEPGKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELE----LPEPVDAITI  102 (243)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCC----CSSCEEEEEE
T ss_pred             cCCCCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcC----CCCCcCEEEE
Confidence            557799999999999999999875    5899999999887666555443 248999999998754    2368999998


Q ss_pred             cC
Q 024665          220 DV  221 (264)
Q Consensus       220 d~  221 (264)
                      ..
T Consensus       103 ~~  104 (243)
T 3d2l_A          103 LC  104 (243)
T ss_dssp             CT
T ss_pred             eC
Confidence            64

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.82  E-value=6.8e-09  Score=93.32  Aligned_cols=80  Identities=19%  Similarity=0.128  Sum_probs=61.4

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc------CCCeEEEEcCCCCchhhcccCCCcc
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK------RTNVIPIIEDARHPAKYRMLVGMVD  215 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~------~~nV~~i~~D~~~~~~~~~~~~~fD  215 (264)
                      .+..+|||||||+|.++..+++.. +..+|++||+|+.+++.+.+....      .++|+++++|+.+....  ..++||
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~--~~~~fD  183 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN--HKNEFD  183 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH--CTTCEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHh--cCCCce
Confidence            345799999999999999999763 467999999999887665554432      35899999999875432  346899


Q ss_pred             EEEEcCCCc
Q 024665          216 VIFSDVAQP  224 (264)
Q Consensus       216 ~V~~d~p~~  224 (264)
                      +|++|++.|
T Consensus       184 ~Ii~d~~~~  192 (314)
T 2b2c_A          184 VIITDSSDP  192 (314)
T ss_dssp             EEEECCC--
T ss_pred             EEEEcCCCC
Confidence            999998754

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.82  E-value=1.7e-09  Score=96.29  Aligned_cols=68  Identities=19%  Similarity=0.264  Sum_probs=54.1

Q ss_pred             cCCCCCCEEEEEcccC------ChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEE-EEcCCCCchhhcccC
Q 024665          139 IWIKPGARVLYLGAAS------GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIP-IIEDARHPAKYRMLV  211 (264)
Q Consensus       139 ~~l~~g~~VLDlG~G~------G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~-i~~D~~~~~~~~~~~  211 (264)
                      +.++++++|||||||+      |+  ..+++++++.++|+++|+|+.          . .+|++ +++|++++.    ..
T Consensus        59 l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~----------v-~~v~~~i~gD~~~~~----~~  121 (290)
T 2xyq_A           59 LAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF----------V-SDADSTLIGDCATVH----TA  121 (290)
T ss_dssp             CCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC----------B-CSSSEEEESCGGGCC----CS
T ss_pred             cCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC----------C-CCCEEEEECccccCC----cc
Confidence            4588999999999944      66  667777766789999999984          1 37889 999998754    23


Q ss_pred             CCccEEEEcCCC
Q 024665          212 GMVDVIFSDVAQ  223 (264)
Q Consensus       212 ~~fD~V~~d~p~  223 (264)
                      ++||+|++|++.
T Consensus       122 ~~fD~Vvsn~~~  133 (290)
T 2xyq_A          122 NKWDLIISDMYD  133 (290)
T ss_dssp             SCEEEEEECCCC
T ss_pred             CcccEEEEcCCc
Confidence            689999999763

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.82  E-value=8.5e-09  Score=95.41  Aligned_cols=86  Identities=16%  Similarity=0.193  Sum_probs=62.8

Q ss_pred             HHHHHHHhcccccCCCCCCEEEEEccc------CChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcC
Q 024665          127 KLAAAVLGGVDNIWIKPGARVLYLGAA------SGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIED  200 (264)
Q Consensus       127 ~l~~~il~~l~~~~l~~g~~VLDlG~G------~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D  200 (264)
                      .+...++..+    ..+..+|||||||      +|..++.++....+.++|++||+|+.|.       ....||+++++|
T Consensus       204 ~~Ye~lL~~l----~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~-------~~~~rI~fv~GD  272 (419)
T 3sso_A          204 PHYDRHFRDY----RNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH-------VDELRIRTIQGD  272 (419)
T ss_dssp             HHHHHHHGGG----TTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG-------GCBTTEEEEECC
T ss_pred             HHHHHHHHhh----cCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh-------hcCCCcEEEEec
Confidence            3445555332    2356899999999      7888888888766788999999998651       234689999999


Q ss_pred             CCCchhh---cccCCCccEEEEcCCC
Q 024665          201 ARHPAKY---RMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       201 ~~~~~~~---~~~~~~fD~V~~d~p~  223 (264)
                      +.+++..   ....++||+|++|...
T Consensus       273 a~dlpf~~~l~~~d~sFDlVisdgsH  298 (419)
T 3sso_A          273 QNDAEFLDRIARRYGPFDIVIDDGSH  298 (419)
T ss_dssp             TTCHHHHHHHHHHHCCEEEEEECSCC
T ss_pred             ccccchhhhhhcccCCccEEEECCcc
Confidence            9986421   0114789999998753

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.82  E-value=6.2e-09  Score=93.67  Aligned_cols=78  Identities=24%  Similarity=0.211  Sum_probs=60.5

Q ss_pred             CEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc--CCCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665          145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--RTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~--~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      .+|||||||+|.++..+++.. +..+|++||+++.+++...+....  .++++++++|+.++... ...++||+|++|..
T Consensus        91 ~rVLdIG~G~G~la~~la~~~-p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~-~~~~~fDvIi~D~~  168 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVY-PQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAES-FTPASRDVIIRDVF  168 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHS-TTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHT-CCTTCEEEEEECCS
T ss_pred             CEEEEEECCcCHHHHHHHHHC-CCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhh-ccCCCCCEEEECCC
Confidence            399999999999999999864 566999999999887655554433  24899999999875421 12468999999976


Q ss_pred             Cc
Q 024665          223 QP  224 (264)
Q Consensus       223 ~~  224 (264)
                      .+
T Consensus       169 ~~  170 (317)
T 3gjy_A          169 AG  170 (317)
T ss_dssp             TT
T ss_pred             Cc
Confidence            43

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=98.81  E-value=2.6e-08  Score=91.23  Aligned_cols=81  Identities=14%  Similarity=0.125  Sum_probs=62.0

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIF  218 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~  218 (264)
                      ..++.+|||+| |+|.+++.++.. ++..+|+++|+|+.+++.+.+++...  .||+++++|+.+..+. ...++||+|+
T Consensus       170 ~~~~~~VLDlG-G~G~~~~~la~~-~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~-~~~~~fD~Vi  246 (373)
T 2qm3_A          170 DLENKDIFVLG-DDDLTSIALMLS-GLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPD-YALHKFDTFI  246 (373)
T ss_dssp             CSTTCEEEEES-CTTCHHHHHHHH-TCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCT-TTSSCBSEEE
T ss_pred             CCCCCEEEEEC-CCCHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchh-hccCCccEEE
Confidence            34689999999 999999999876 45579999999998876655554322  2899999999883211 1235899999


Q ss_pred             EcCCCc
Q 024665          219 SDVAQP  224 (264)
Q Consensus       219 ~d~p~~  224 (264)
                      +|+|..
T Consensus       247 ~~~p~~  252 (373)
T 2qm3_A          247 TDPPET  252 (373)
T ss_dssp             ECCCSS
T ss_pred             ECCCCc
Confidence            999853

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=98.80  E-value=9.6e-09  Score=87.07  Aligned_cols=73  Identities=14%  Similarity=0.068  Sum_probs=58.9

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC-CeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT-NVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~-nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      .++.+|||+|||+|.++..+++.   ..+|+++|+|+.+++.+.+...... ++++++.|+.+.+    ..++||+|++.
T Consensus        36 ~~~~~vLdiG~G~G~~~~~l~~~---~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~----~~~~fD~v~~~  108 (246)
T 1y8c_A           36 LVFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLN----INRKFDLITCC  108 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCC----CSCCEEEEEEC
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHC---CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCC----ccCCceEEEEc
Confidence            37789999999999999999986   3489999999988766665554333 8999999998754    22789999997


Q ss_pred             C
Q 024665          221 V  221 (264)
Q Consensus       221 ~  221 (264)
                      .
T Consensus       109 ~  109 (246)
T 1y8c_A          109 L  109 (246)
T ss_dssp             T
T ss_pred             C
Confidence            5

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.78  E-value=9.8e-09  Score=85.84  Aligned_cols=75  Identities=19%  Similarity=0.117  Sum_probs=56.6

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccC-CCccEEEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLV-GMVDVIFS  219 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~-~~fD~V~~  219 (264)
                      ..++.+|||+|||+|.++..+++.   ..+|+++|+|+.++    +.+..+.++.+++.|+.+........ .+||+|++
T Consensus        50 ~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~----~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~  122 (227)
T 3e8s_A           50 GRQPERVLDLGCGEGWLLRALADR---GIEAVGVDGDRTLV----DAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICA  122 (227)
T ss_dssp             HTCCSEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHH----HHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEE
T ss_pred             cCCCCEEEEeCCCCCHHHHHHHHC---CCEEEEEcCCHHHH----HHHHHhcccccchhhHHhhcccccccCCCccEEEE
Confidence            556799999999999999999987   34899999999774    34444467889999987763221222 35999998


Q ss_pred             cCC
Q 024665          220 DVA  222 (264)
Q Consensus       220 d~p  222 (264)
                      ...
T Consensus       123 ~~~  125 (227)
T 3e8s_A          123 NFA  125 (227)
T ss_dssp             ESC
T ss_pred             Cch
Confidence            754

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.78  E-value=1.3e-08  Score=92.09  Aligned_cols=78  Identities=18%  Similarity=0.128  Sum_probs=60.4

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCC----CEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhcccCCCcc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPN----GVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRMLVGMVD  215 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~----g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~~~~fD  215 (264)
                      ..++.+|||+|||+|.+++.+++.+...    .+|+++|+++.+++.+...... ..++.++++|+.+..    ...+||
T Consensus       128 ~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~----~~~~fD  203 (344)
T 2f8l_A          128 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANL----LVDPVD  203 (344)
T ss_dssp             TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCC----CCCCEE
T ss_pred             CCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCcc----ccCCcc
Confidence            4567899999999999999999887432    6899999998776444333221 237899999987743    246899


Q ss_pred             EEEEcCC
Q 024665          216 VIFSDVA  222 (264)
Q Consensus       216 ~V~~d~p  222 (264)
                      +|++|+|
T Consensus       204 ~Ii~NPP  210 (344)
T 2f8l_A          204 VVISDLP  210 (344)
T ss_dssp             EEEEECC
T ss_pred             EEEECCC
Confidence            9999999

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=98.78  E-value=1.2e-09  Score=94.67  Aligned_cols=87  Identities=17%  Similarity=0.131  Sum_probs=56.2

Q ss_pred             chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHH--hCC-CCEEEEEeCChHHHHHHHHHhhcCCCe---EEEE
Q 024665          125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDI--VGP-NGVVYAVEFSHRSGRDLVNMAKKRTNV---IPII  198 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~--~~~-~g~V~avD~s~~~~~~l~~~a~~~~nV---~~i~  198 (264)
                      +|.-+.+++..-+...++|+.+||||||++|.|+..++++  ++. .+.|+|+|+ + +    ..+.....++   ++++
T Consensus        55 RSRAayKL~EIdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-~----~P~~~~~~Gv~~i~~~~  128 (269)
T 2px2_A           55 VSRGTAKLRWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-E----EPMLMQSYGWNIVTMKS  128 (269)
T ss_dssp             SSTHHHHHHHHHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-C----CCCCCCSTTGGGEEEEC
T ss_pred             ccHHHHHHHHHHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-c----CCCcccCCCceEEEeec
Confidence            5555555544444446899999999999999999999998  432 345666663 1 0    0111111233   4444


Q ss_pred             c-CCCCchhhcccCCCccEEEEcCC
Q 024665          199 E-DARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       199 ~-D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      + |++++.     ..++|+|+||++
T Consensus       129 G~Df~~~~-----~~~~DvVLSDMA  148 (269)
T 2px2_A          129 GVDVFYKP-----SEISDTLLCDIG  148 (269)
T ss_dssp             SCCGGGSC-----CCCCSEEEECCC
T ss_pred             cCCccCCC-----CCCCCEEEeCCC
Confidence            6 987743     248999999997

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.77  E-value=4.5e-08  Score=84.63  Aligned_cols=70  Identities=19%  Similarity=0.111  Sum_probs=54.7

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcC
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDV  221 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~  221 (264)
                      .++.+|||+|||+|.++..+++.   ..+|+++|+|+.+++.+.+...  .+  +++.|+.+.+   ...++||+|++..
T Consensus        53 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~--~~--~~~~d~~~~~---~~~~~fD~v~~~~  122 (260)
T 2avn_A           53 KNPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKGV--KN--VVEAKAEDLP---FPSGAFEAVLALG  122 (260)
T ss_dssp             CSCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHTC--SC--EEECCTTSCC---SCTTCEEEEEECS
T ss_pred             CCCCeEEEeCCCcCHHHHHHHHc---CCeEEEEeCCHHHHHHHHhhcC--CC--EEECcHHHCC---CCCCCEEEEEEcc
Confidence            37889999999999999999976   3589999999988655544432  23  8899988754   2346899999864

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.74  E-value=1.6e-08  Score=86.92  Aligned_cols=81  Identities=10%  Similarity=0.082  Sum_probs=59.6

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC---------------------------
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT---------------------------  192 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~---------------------------  192 (264)
                      ...++.+|||+|||+|.++..++...  ..+|+++|+|+.+++.+.+......                           
T Consensus        53 ~~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (265)
T 2i62_A           53 GAVKGELLIDIGSGPTIYQLLSACES--FTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEE  130 (265)
T ss_dssp             SSCCEEEEEEESCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHH
T ss_pred             cccCCCEEEEECCCccHHHHHHhhcc--cCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHH
Confidence            34678899999999999999988652  2489999999988766655543322                           


Q ss_pred             ----Ce-EEEEcCCCCchhh-cccCCCccEEEEcCC
Q 024665          193 ----NV-IPIIEDARHPAKY-RMLVGMVDVIFSDVA  222 (264)
Q Consensus       193 ----nV-~~i~~D~~~~~~~-~~~~~~fD~V~~d~p  222 (264)
                          +| ++++.|+.+.... ....++||+|++...
T Consensus       131 ~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~  166 (265)
T 2i62_A          131 KLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLC  166 (265)
T ss_dssp             HHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESC
T ss_pred             HhhhhheeEEEeeeccCCCCCccccCCccEEEEhhh
Confidence                18 9999999886431 111268999998654

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.74  E-value=5.3e-08  Score=82.33  Aligned_cols=69  Identities=16%  Similarity=0.122  Sum_probs=56.1

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      .++.+|||+|||+|.++..+++...   +|+++|+|+.+++.+.+.   ..++++++.|+.+.+    ..++||+|++.
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~---~~~~~~~~~d~~~~~----~~~~~D~v~~~  107 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKR---LPDATLHQGDMRDFR----LGRKFSAVVSM  107 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHH---CTTCEEEECCTTTCC----CSSCEEEEEEC
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHh---CCCCEEEECCHHHcc----cCCCCcEEEEc
Confidence            6788999999999999999998853   899999999886544332   247999999998764    24689999953

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.74  E-value=4.2e-09  Score=92.55  Aligned_cols=95  Identities=17%  Similarity=0.119  Sum_probs=61.8

Q ss_pred             chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCc
Q 024665          125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHP  204 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~  204 (264)
                      +|.-+.+++...++..++|+.+||||||++|.|+..+++.. +...|+++|+...+....+.......++..+..++. .
T Consensus        72 rSRAAfKL~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~-gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~d-v  149 (282)
T 3gcz_A           72 VSRGSAKLRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLK-NVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTD-V  149 (282)
T ss_dssp             SSTHHHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCC-G
T ss_pred             ecHHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc-CCCeeeeEEeccCccccccccccCCCceEEeeCCcc-h
Confidence            66666666666666678999999999999999999999764 455799999985320000000001125555554432 1


Q ss_pred             hhhcccCCCccEEEEcCCC
Q 024665          205 AKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       205 ~~~~~~~~~fD~V~~d~p~  223 (264)
                      ..  ....++|+|++|+++
T Consensus       150 ~~--l~~~~~DvVLSDmAp  166 (282)
T 3gcz_A          150 FN--MEVIPGDTLLCDIGE  166 (282)
T ss_dssp             GG--SCCCCCSEEEECCCC
T ss_pred             hh--cCCCCcCEEEecCcc
Confidence            11  234689999999984

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.73  E-value=4.6e-09  Score=92.18  Aligned_cols=95  Identities=15%  Similarity=0.107  Sum_probs=61.9

Q ss_pred             chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCc
Q 024665          125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHP  204 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~  204 (264)
                      +|.-+.+++...++..++++.+||||||++|.|+..+++.. +...|+++|+...+..+.+.......|+..++.++...
T Consensus        56 rSRaA~KL~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~-~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~  134 (277)
T 3evf_A           56 VSRGTAKLRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQK-EVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIH  134 (277)
T ss_dssp             SSTHHHHHHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTT
T ss_pred             cccHHHHHHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhc-CCCcceeEEEeccCcccccccCcCCCCeEEEeccceeh
Confidence            55555666655556568999999999999999999998763 34578999988422000000000011667777765322


Q ss_pred             hhhcccCCCccEEEEcCCC
Q 024665          205 AKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       205 ~~~~~~~~~fD~V~~d~p~  223 (264)
                      .   ....+||+|++|+++
T Consensus       135 ~---l~~~~~DlVlsD~ap  150 (277)
T 3evf_A          135 R---LEPVKCDTLLCDIGE  150 (277)
T ss_dssp             T---SCCCCCSEEEECCCC
T ss_pred             h---cCCCCccEEEecCcc
Confidence            1   234689999999864

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.72  E-value=2.8e-08  Score=90.84  Aligned_cols=75  Identities=17%  Similarity=0.135  Sum_probs=59.1

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      .+++|++||||||++|.||..+++.   .++|+|||..+ +    .......++|++++.|+.+..+   ...+||+|++
T Consensus       208 ~l~~G~~vlDLGAaPGGWT~~l~~r---g~~V~aVD~~~-l----~~~l~~~~~V~~~~~d~~~~~~---~~~~~D~vvs  276 (375)
T 4auk_A          208 RLANGMWAVDLGACPGGWTYQLVKR---NMWVYSVDNGP-M----AQSLMDTGQVTWLREDGFKFRP---TRSNISWMVC  276 (375)
T ss_dssp             HSCTTCEEEEETCTTCHHHHHHHHT---TCEEEEECSSC-C----CHHHHTTTCEEEECSCTTTCCC---CSSCEEEEEE
T ss_pred             cCCCCCEEEEeCcCCCHHHHHHHHC---CCEEEEEEhhh-c----ChhhccCCCeEEEeCccccccC---CCCCcCEEEE
Confidence            3789999999999999999999986   46999999874 1    1122235699999999987653   2358999999


Q ss_pred             cCCCch
Q 024665          220 DVAQPD  225 (264)
Q Consensus       220 d~p~~~  225 (264)
                      |+..+.
T Consensus       277 Dm~~~p  282 (375)
T 4auk_A          277 DMVEKP  282 (375)
T ss_dssp             CCSSCH
T ss_pred             cCCCCh
Confidence            999533

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.72  E-value=1.5e-08  Score=88.67  Aligned_cols=87  Identities=9%  Similarity=-0.067  Sum_probs=66.3

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHh------hcCCCeEEEEcCCCCchhhcccCCCccE
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA------KKRTNVIPIIEDARHPAKYRMLVGMVDV  216 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a------~~~~nV~~i~~D~~~~~~~~~~~~~fD~  216 (264)
                      ...+|||+|||+|.++..++..  + .+|++||+++.+++.+.+..      ...++++++++|+.+..      ++||+
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~--~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~------~~fD~  142 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKY--D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI------KKYDL  142 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTS--S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC------CCEEE
T ss_pred             CCCEEEEEeCCcCHHHHHHHhC--C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH------hhCCE
Confidence            4579999999999999999887  4 79999999998754332221      11348999999997743      68999


Q ss_pred             EEEcCCCchHHHHHHHHHhCCC
Q 024665          217 IFSDVAQPDQVCFLCLILFQPI  238 (264)
Q Consensus       217 V~~d~p~~~~~~~~~~~~l~~~  238 (264)
                      |++|.+.|........+.++|.
T Consensus       143 Ii~d~~dp~~~~~~~~~~L~pg  164 (262)
T 2cmg_A          143 IFCLQEPDIHRIDGLKRMLKED  164 (262)
T ss_dssp             EEESSCCCHHHHHHHHTTEEEE
T ss_pred             EEECCCChHHHHHHHHHhcCCC
Confidence            9999888776555566666665

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.70  E-value=3.7e-08  Score=97.48  Aligned_cols=97  Identities=18%  Similarity=0.182  Sum_probs=71.9

Q ss_pred             CcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhC------------------------------------
Q 024665          123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVG------------------------------------  166 (264)
Q Consensus       123 p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~------------------------------------  166 (264)
                      |-...+++.++....   ++++..|||.+||||++.+.+|....                                    
T Consensus       173 pl~e~LAa~ll~~~~---~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~  249 (703)
T 3v97_A          173 PIKETLAAAIVMRSG---WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRAR  249 (703)
T ss_dssp             SSCHHHHHHHHHHTT---CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHhhC---CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhh
Confidence            445678888875544   77889999999999999999987641                                    


Q ss_pred             -----CCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCCCchhhcccCCCccEEEEcCCC
Q 024665          167 -----PNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       167 -----~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~  223 (264)
                           +..+|+++|+++.+++....++...   ..|++.+.|+.++... ...+.||+|++|||.
T Consensus       250 ~~~~~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~-~~~~~~d~Iv~NPPY  313 (703)
T 3v97_A          250 KGLAEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNP-LPKGPYGTVLSNPPY  313 (703)
T ss_dssp             HHHHHCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCS-CTTCCCCEEEECCCC
T ss_pred             hccccCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccc-cccCCCCEEEeCCCc
Confidence                 2357999999998865555444332   2599999999876421 112379999999993

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.70  E-value=2.9e-07  Score=80.86  Aligned_cols=95  Identities=17%  Similarity=0.075  Sum_probs=67.4

Q ss_pred             CCCEEEEEcccC---ChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhh--------cccC
Q 024665          143 PGARVLYLGAAS---GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY--------RMLV  211 (264)
Q Consensus       143 ~g~~VLDlG~G~---G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~--------~~~~  211 (264)
                      +..+|||||||+   |.++..+++. .+..+|++||+|+.|++...+......+++++++|++++...        ....
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~-~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~  155 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSV-NPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDF  155 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHH-CTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCT
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHh-CCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCC
Confidence            447999999999   9887666654 467899999999988766665554446899999999875311        0112


Q ss_pred             CCccEEEEcCC-----C--chHHHHHHHHHhCCC
Q 024665          212 GMVDVIFSDVA-----Q--PDQVCFLCLILFQPI  238 (264)
Q Consensus       212 ~~fD~V~~d~p-----~--~~~~~~~~~~~l~~~  238 (264)
                      .+||+|++...     .  +..........++|+
T Consensus       156 ~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pG  189 (274)
T 2qe6_A          156 SRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPG  189 (274)
T ss_dssp             TSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTT
T ss_pred             CCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCC
Confidence            47999998754     1  334445555667776

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.69  E-value=4.6e-08  Score=87.28  Aligned_cols=78  Identities=13%  Similarity=0.026  Sum_probs=54.0

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC--------CeEEEEcCCCCch-----hhc
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT--------NVIPIIEDARHPA-----KYR  208 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~--------nV~~i~~D~~~~~-----~~~  208 (264)
                      .++.+|||||||+|..+..++..  ...+|+|+|+|+.|++.+.+.+....        ++++++.|+....     ...
T Consensus        47 ~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~  124 (302)
T 2vdw_A           47 SNKRKVLAIDFGNGADLEKYFYG--EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREV  124 (302)
T ss_dssp             CSCCEEEETTCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTT
T ss_pred             CCCCeEEEEecCCcHhHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcc
Confidence            45889999999999877766653  34689999999999777666553221        2678888873211     000


Q ss_pred             ccCCCccEEEEcC
Q 024665          209 MLVGMVDVIFSDV  221 (264)
Q Consensus       209 ~~~~~fD~V~~d~  221 (264)
                      ...++||+|++..
T Consensus       125 ~~~~~FD~V~~~~  137 (302)
T 2vdw_A          125 FYFGKFNIIDWQF  137 (302)
T ss_dssp             CCSSCEEEEEEES
T ss_pred             ccCCCeeEEEECc
Confidence            1346899999754

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.68  E-value=2.8e-08  Score=96.04  Aligned_cols=77  Identities=13%  Similarity=0.100  Sum_probs=61.1

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC--CeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT--NVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~--nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      ....+|||||||.|.++..||++   ...|++||.++.+++.+...+....  +|.+.+.|+.++... ...++||+|++
T Consensus        65 ~~~~~vLDvGCG~G~~~~~la~~---ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~v~~  140 (569)
T 4azs_A           65 GRPLNVLDLGCAQGFFSLSLASK---GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAA-LEEGEFDLAIG  140 (569)
T ss_dssp             TSCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHH-CCTTSCSEEEE
T ss_pred             CCCCeEEEECCCCcHHHHHHHhC---CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhh-ccCCCccEEEE
Confidence            34579999999999999999987   3589999999988777666665543  899999999886421 23468999998


Q ss_pred             cCC
Q 024665          220 DVA  222 (264)
Q Consensus       220 d~p  222 (264)
                      --.
T Consensus       141 ~e~  143 (569)
T 4azs_A          141 LSV  143 (569)
T ss_dssp             ESC
T ss_pred             Ccc
Confidence            544

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.65  E-value=4.1e-08  Score=86.18  Aligned_cols=79  Identities=10%  Similarity=0.039  Sum_probs=52.8

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC------------------------------
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR------------------------------  191 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~------------------------------  191 (264)
                      .++.+|||||||+|.++..++..  ...+|+++|+|+.|++.+.+.....                              
T Consensus        70 ~~~~~vLDiGcG~G~~~~l~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  147 (289)
T 2g72_A           70 VSGRTLIDIGSGPTVYQLLSACS--HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL  147 (289)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGG--GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred             CCCCeEEEECCCcChHHHHhhcc--CCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHH
Confidence            37789999999999965545443  2458999999998876554432211                              


Q ss_pred             --CCeEEEEcCCCCchhhc---ccCCCccEEEEcCC
Q 024665          192 --TNVIPIIEDARHPAKYR---MLVGMVDVIFSDVA  222 (264)
Q Consensus       192 --~nV~~i~~D~~~~~~~~---~~~~~fD~V~~d~p  222 (264)
                        ..+++++.|+.+..++.   ...++||+|++...
T Consensus       148 ~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~  183 (289)
T 2g72_A          148 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFC  183 (289)
T ss_dssp             HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESC
T ss_pred             HhhhceEEecccCCCCCccccccCCCCCCEEEehhh
Confidence              02567888998733221   12346999999754

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=98.63  E-value=7.1e-08  Score=82.68  Aligned_cols=88  Identities=16%  Similarity=0.059  Sum_probs=63.8

Q ss_pred             chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHH---hhcC--CCeEEEEc
Q 024665          125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNM---AKKR--TNVIPIIE  199 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~---a~~~--~nV~~i~~  199 (264)
                      +|.-+.++....+...++|+.+||||||++|.|+..++.+.+. .+|+|+|+-..-    .+.   ....  ..|+++++
T Consensus        60 rSRa~~KL~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~-~~V~avdvG~~g----he~P~~~~s~gwn~v~fk~g  134 (267)
T 3p8z_A           60 VSRGSAKLQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKV-TEVRGYTKGGPG----HEEPVPMSTYGWNIVKLMSG  134 (267)
T ss_dssp             SSTHHHHHHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTE-EEEEEECCCSTT----SCCCCCCCCTTTTSEEEECS
T ss_pred             cchHHHHHHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCC-CEEEEEecCCCC----ccCcchhhhcCcCceEEEec
Confidence            5555556655556667899999999999999999999988654 489999998311    000   0000  26899999


Q ss_pred             -CCCCchhhcccCCCccEEEEcCC
Q 024665          200 -DARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       200 -D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                       |+....     ..++|.|+||+.
T Consensus       135 vDv~~~~-----~~~~DtllcDIg  153 (267)
T 3p8z_A          135 KDVFYLP-----PEKCDTLLCDIG  153 (267)
T ss_dssp             CCGGGCC-----CCCCSEEEECCC
T ss_pred             cceeecC-----CccccEEEEecC
Confidence             874433     357999999988

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.60  E-value=1.1e-07  Score=83.90  Aligned_cols=90  Identities=14%  Similarity=0.145  Sum_probs=70.9

Q ss_pred             chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCc
Q 024665          125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHP  204 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~  204 (264)
                      .+-|..+++..|.   ++|+..+||++||.|..|..+++.   .++|+|+|.++.+++...+ ... .++++++.|..++
T Consensus         7 ~pVLl~e~le~L~---~~~gg~~VD~T~G~GGHS~~il~~---~g~VigiD~Dp~Ai~~A~~-L~~-~rv~lv~~~f~~l   78 (285)
T 1wg8_A            7 VPVLYQEALDLLA---VRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKG-LHL-PGLTVVQGNFRHL   78 (285)
T ss_dssp             CCTTHHHHHHHHT---CCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHH-TCC-TTEEEEESCGGGH
T ss_pred             hhHHHHHHHHhhC---CCCCCEEEEeCCCCcHHHHHHHHC---CCEEEEEeCCHHHHHHHHh-hcc-CCEEEEECCcchH
Confidence            4556666766665   899999999999999999999987   5799999999988655444 322 5899999999987


Q ss_pred             hhhc--ccCCCccEEEEcCC
Q 024665          205 AKYR--MLVGMVDVIFSDVA  222 (264)
Q Consensus       205 ~~~~--~~~~~fD~V~~d~p  222 (264)
                      ..+-  ....+||.|++|..
T Consensus        79 ~~~L~~~g~~~vDgIL~DLG   98 (285)
T 1wg8_A           79 KRHLAALGVERVDGILADLG   98 (285)
T ss_dssp             HHHHHHTTCSCEEEEEEECS
T ss_pred             HHHHHHcCCCCcCEEEeCCc
Confidence            6431  12257999999987

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=98.59  E-value=5.9e-08  Score=81.17  Aligned_cols=75  Identities=15%  Similarity=0.020  Sum_probs=54.9

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCCCchhhcccCCCccEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      +.+.++|||||||+|.+++.++... |..+|+|+|+|++|++-..+.+...   .|+.+  .|..+..    ..++||+|
T Consensus        47 l~~~~~VLDlGCG~GplAl~l~~~~-p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~----~~~~~DvV  119 (200)
T 3fzg_A           47 IKHVSSILDFGCGFNPLALYQWNEN-EKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDV----YKGTYDVV  119 (200)
T ss_dssp             SCCCSEEEEETCTTHHHHHHHHCSS-CCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHH----TTSEEEEE
T ss_pred             cCCCCeEEEecCCCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccC----CCCCcChh
Confidence            4567899999999999999998764 5569999999999976555554432   24555  5654332    34689999


Q ss_pred             EEcCC
Q 024665          218 FSDVA  222 (264)
Q Consensus       218 ~~d~p  222 (264)
                      ++.-.
T Consensus       120 La~k~  124 (200)
T 3fzg_A          120 FLLKM  124 (200)
T ss_dssp             EEETC
T ss_pred             hHhhH
Confidence            97543

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.58  E-value=2e-07  Score=81.99  Aligned_cols=98  Identities=16%  Similarity=0.065  Sum_probs=63.3

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHh---CCCCEE--EEEeCChHHHHHHHHHhhcC---CCeEEE--EcCCCCchh---h
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIV---GPNGVV--YAVEFSHRSGRDLVNMAKKR---TNVIPI--IEDARHPAK---Y  207 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~---~~~g~V--~avD~s~~~~~~l~~~a~~~---~nV~~i--~~D~~~~~~---~  207 (264)
                      ..++.+|||||||+|.++..++..+   .+...|  +++|.|+.|++.+.+.+...   .|+.+.  +.|+.++..   .
T Consensus        50 ~~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  129 (292)
T 2aot_A           50 TKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLE  129 (292)
T ss_dssp             TCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHT
T ss_pred             CCCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcc
Confidence            3677899999999998876554332   145544  99999999987766665432   366554  444433221   0


Q ss_pred             cccCCCccEEEEcCC-----CchHHHHHHHHHhCCC
Q 024665          208 RMLVGMVDVIFSDVA-----QPDQVCFLCLILFQPI  238 (264)
Q Consensus       208 ~~~~~~fD~V~~d~p-----~~~~~~~~~~~~l~~~  238 (264)
                      ....++||+|++...     .+.+........++|+
T Consensus       130 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lkpg  165 (292)
T 2aot_A          130 KKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTN  165 (292)
T ss_dssp             TTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEE
T ss_pred             ccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCC
Confidence            012468999998754     4555666666666666

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.58  E-value=6.7e-08  Score=90.59  Aligned_cols=78  Identities=14%  Similarity=0.052  Sum_probs=58.7

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhC------------CCCEEEEEeCChHHHHHHHHHhhcC-C---CeEEEEcCCCCc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVG------------PNGVVYAVEFSHRSGRDLVNMAKKR-T---NVIPIIEDARHP  204 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~------------~~g~V~avD~s~~~~~~l~~~a~~~-~---nV~~i~~D~~~~  204 (264)
                      ++++.+|||.|||||.+++.+++.+.            ...+||++|+++.+++.+....... .   ++.++++|+...
T Consensus       169 ~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~  248 (445)
T 2okc_A          169 PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEK  248 (445)
T ss_dssp             CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTS
T ss_pred             CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCC
Confidence            67888999999999999999998752            1247999999987754433322211 1   678899998775


Q ss_pred             hhhcccCCCccEEEEcCC
Q 024665          205 AKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       205 ~~~~~~~~~fD~V~~d~p  222 (264)
                      +.    ..+||+|++|||
T Consensus       249 ~~----~~~fD~Iv~NPP  262 (445)
T 2okc_A          249 EP----STLVDVILANPP  262 (445)
T ss_dssp             CC----SSCEEEEEECCC
T ss_pred             cc----cCCcCEEEECCC
Confidence            42    248999999999

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.58  E-value=7.4e-08  Score=82.77  Aligned_cols=39  Identities=18%  Similarity=0.226  Sum_probs=33.2

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHH
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRD  183 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~  183 (264)
                      ++.+|||+|||+|.++..+++.  ...+|+|||+|+.|++.
T Consensus        37 ~g~~VLDiGcGtG~~t~~la~~--g~~~V~gvDis~~ml~~   75 (232)
T 3opn_A           37 NGKTCLDIGSSTGGFTDVMLQN--GAKLVYALDVGTNQLAW   75 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT--TCSEEEEECSSCCCCCH
T ss_pred             CCCEEEEEccCCCHHHHHHHhc--CCCEEEEEcCCHHHHHH
Confidence            4679999999999999999987  34599999999877543

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.56  E-value=5.5e-07  Score=80.32  Aligned_cols=75  Identities=16%  Similarity=0.102  Sum_probs=58.4

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcccCCCccEEE
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVDVIF  218 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~~~~fD~V~  218 (264)
                      .+..+|||+|||+|.++..+++.. +..+|+++|++ .+++.+.+....   ..+|++++.|+.+.+    ....||+|+
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~D~v~  237 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHN-PNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVD----YGNDYDLVL  237 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSC----CCSCEEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCC----CCCCCcEEE
Confidence            788999999999999999999986 56799999999 776555444322   237999999998753    224599999


Q ss_pred             EcCC
Q 024665          219 SDVA  222 (264)
Q Consensus       219 ~d~p  222 (264)
                      +...
T Consensus       238 ~~~~  241 (335)
T 2r3s_A          238 LPNF  241 (335)
T ss_dssp             EESC
T ss_pred             Ecch
Confidence            8544

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.55  E-value=1.6e-08  Score=93.45  Aligned_cols=72  Identities=14%  Similarity=0.187  Sum_probs=49.9

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEc-----CCCCchhhcccCCCc
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIE-----DARHPAKYRMLVGMV  214 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~-----D~~~~~~~~~~~~~f  214 (264)
                      .++++.+|||+|||+|.++..+++.   ..+|+++|+|+.+++    .+..+ ++..+..     |+.+++   ...++|
T Consensus       104 ~~~~~~~VLDiGcG~G~~~~~l~~~---g~~v~gvD~s~~~~~----~a~~~-~~~~~~~~~~~~~~~~l~---~~~~~f  172 (416)
T 4e2x_A          104 LTGPDPFIVEIGCNDGIMLRTIQEA---GVRHLGFEPSSGVAA----KAREK-GIRVRTDFFEKATADDVR---RTEGPA  172 (416)
T ss_dssp             TCSSSCEEEEETCTTTTTHHHHHHT---TCEEEEECCCHHHHH----HHHTT-TCCEECSCCSHHHHHHHH---HHHCCE
T ss_pred             CCCCCCEEEEecCCCCHHHHHHHHc---CCcEEEECCCHHHHH----HHHHc-CCCcceeeechhhHhhcc---cCCCCE
Confidence            4788999999999999999999986   348999999997743    33332 2333322     222211   224789


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+|++...
T Consensus       173 D~I~~~~v  180 (416)
T 4e2x_A          173 NVIYAANT  180 (416)
T ss_dssp             EEEEEESC
T ss_pred             EEEEECCh
Confidence            99998755

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.55  E-value=4.1e-08  Score=82.59  Aligned_cols=65  Identities=22%  Similarity=0.204  Sum_probs=50.5

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      |+.+|||+|||+|.++..++..       +++|+|+.+++.    +..+ ++++++.|+.+.+   ...++||+|++...
T Consensus        47 ~~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~----a~~~-~~~~~~~d~~~~~---~~~~~fD~v~~~~~  111 (219)
T 1vlm_A           47 PEGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEI----ARKR-GVFVLKGTAENLP---LKDESFDFALMVTT  111 (219)
T ss_dssp             CSSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHH----HHHT-TCEEEECBTTBCC---SCTTCEEEEEEESC
T ss_pred             CCCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHH----HHhc-CCEEEEcccccCC---CCCCCeeEEEEcch
Confidence            4889999999999999887642       999999977533    3333 7999999997754   23468999998754

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.54  E-value=8.6e-08  Score=80.18  Aligned_cols=72  Identities=17%  Similarity=0.107  Sum_probs=54.2

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcC
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDV  221 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~  221 (264)
                      .++.+|||+|||+|.++..+++.  + .+|+++|+|+.++    +.+..+ ..++++.|+.+... ....++||+|++..
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~--~-~~~~~~D~~~~~~----~~~~~~-~~~~~~~d~~~~~~-~~~~~~fD~v~~~~  101 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKEN--G-TRVSGIEAFPEAA----EQAKEK-LDHVVLGDIETMDM-PYEEEQFDCVIFGD  101 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTT--T-CEEEEEESSHHHH----HHHHTT-SSEEEESCTTTCCC-CSCTTCEEEEEEES
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhc--C-CeEEEEeCCHHHH----HHHHHh-CCcEEEcchhhcCC-CCCCCccCEEEECC
Confidence            67889999999999999999987  3 6999999999764    333322 24788999876321 12346899999865


Q ss_pred             C
Q 024665          222 A  222 (264)
Q Consensus       222 p  222 (264)
                      .
T Consensus       102 ~  102 (230)
T 3cc8_A          102 V  102 (230)
T ss_dssp             C
T ss_pred             h
Confidence            4

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.52  E-value=1e-06  Score=79.89  Aligned_cols=76  Identities=16%  Similarity=0.073  Sum_probs=59.8

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcccCCCccE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVDV  216 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~~~~fD~  216 (264)
                      .+++..+|||+|||+|.++..+++.. +..+++++|+ +.+++.+.+....   ..+|++++.|+.+..     ...||+
T Consensus       179 ~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~D~  251 (374)
T 1qzz_A          179 DWSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPL-----PVTADV  251 (374)
T ss_dssp             CCTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC-----SCCEEE
T ss_pred             CCCCCCEEEEECCCcCHHHHHHHHHC-CCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcC-----CCCCCE
Confidence            36788999999999999999999985 5679999999 8886655554432   238999999997632     235999


Q ss_pred             EEEcCC
Q 024665          217 IFSDVA  222 (264)
Q Consensus       217 V~~d~p  222 (264)
                      |++...
T Consensus       252 v~~~~v  257 (374)
T 1qzz_A          252 VLLSFV  257 (374)
T ss_dssp             EEEESC
T ss_pred             EEEecc
Confidence            998655

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.47  E-value=3.2e-07  Score=88.19  Aligned_cols=80  Identities=8%  Similarity=-0.021  Sum_probs=59.1

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCC-----------------CEEEEEeCChHHHHHHHHHhhcC--CC-----eEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPN-----------------GVVYAVEFSHRSGRDLVNMAKKR--TN-----VIP  196 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~-----------------g~V~avD~s~~~~~~l~~~a~~~--~n-----V~~  196 (264)
                      +.++.+|||.+||||.+.+.+++.+...                 ..||++|+++.+++-+.......  .+     +.+
T Consensus       167 p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I  246 (541)
T 2ar0_A          167 PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAI  246 (541)
T ss_dssp             CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSE
T ss_pred             cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCe
Confidence            6788999999999999999998876321                 36999999987754333222221  13     788


Q ss_pred             EEcCCCCchhhcccCCCccEEEEcCC
Q 024665          197 IIEDARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       197 i~~D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      +++|.......  ...+||+|++|||
T Consensus       247 ~~gDtL~~~~~--~~~~fD~Vv~NPP  270 (541)
T 2ar0_A          247 RLGNTLGSDGE--NLPKAHIVATNPP  270 (541)
T ss_dssp             EESCTTSHHHH--TSCCEEEEEECCC
T ss_pred             EeCCCcccccc--cccCCeEEEECCC
Confidence            99998765421  2368999999999

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.47  E-value=1.2e-06  Score=78.30  Aligned_cols=77  Identities=8%  Similarity=-0.053  Sum_probs=59.3

Q ss_pred             cCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh---cCCCeEEEEcCCCCchhhcccCCCcc
Q 024665          139 IWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK---KRTNVIPIIEDARHPAKYRMLVGMVD  215 (264)
Q Consensus       139 ~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~---~~~nV~~i~~D~~~~~~~~~~~~~fD  215 (264)
                      +.+.+..+|||+|||+|.++..+++.. |..+++++|+ +.+++...+...   ...+|+++.+|+.++.     ...||
T Consensus       165 ~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----p~~~D  237 (332)
T 3i53_A          165 YDWAALGHVVDVGGGSGGLLSALLTAH-EDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDPL-----PAGAG  237 (332)
T ss_dssp             SCCGGGSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC-----CCSCS
T ss_pred             CCCCCCCEEEEeCCChhHHHHHHHHHC-CCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCCC-----CCCCc
Confidence            345667899999999999999999885 5779999999 877655544433   2358999999997532     13899


Q ss_pred             EEEEcCC
Q 024665          216 VIFSDVA  222 (264)
Q Consensus       216 ~V~~d~p  222 (264)
                      +|++...
T Consensus       238 ~v~~~~v  244 (332)
T 3i53_A          238 GYVLSAV  244 (332)
T ss_dssp             EEEEESC
T ss_pred             EEEEehh
Confidence            9998544

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.46  E-value=1.2e-06  Score=79.34  Aligned_cols=76  Identities=9%  Similarity=0.011  Sum_probs=59.1

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcccCCCccE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVDV  216 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~~~~fD~  216 (264)
                      .+.+..+|||+|||+|.++..+++.. |..+|+++|+ +.+++.+.+....   ..+|+++++|+.+.+     ...+|+
T Consensus       187 ~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~D~  259 (359)
T 1x19_A          187 KLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES-----YPEADA  259 (359)
T ss_dssp             CCTTCCEEEEESCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSC-----CCCCSE
T ss_pred             CCCCCCEEEEECCcccHHHHHHHHHC-CCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCC-----CCCCCE
Confidence            37788999999999999999999985 5679999999 8776555544432   236999999998753     133499


Q ss_pred             EEEcCC
Q 024665          217 IFSDVA  222 (264)
Q Consensus       217 V~~d~p  222 (264)
                      |++...
T Consensus       260 v~~~~v  265 (359)
T 1x19_A          260 VLFCRI  265 (359)
T ss_dssp             EEEESC
T ss_pred             EEEech
Confidence            998655

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=98.46  E-value=2.1e-07  Score=82.15  Aligned_cols=92  Identities=14%  Similarity=0.058  Sum_probs=62.9

Q ss_pred             chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC-CCeEEEEc-CCC
Q 024665          125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIE-DAR  202 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~-~nV~~i~~-D~~  202 (264)
                      .|.-+.++....+...++++.+||||||++|.|+..++.+.+. .+|+|+|+-..--++-+...... ..|++++. |+.
T Consensus        76 ~SR~~~KL~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv-~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~  154 (321)
T 3lkz_A           76 VSRGTAKLRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRV-QEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVF  154 (321)
T ss_dssp             SSTHHHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTE-EEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTT
T ss_pred             cchHHHHHHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCC-CEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHh
Confidence            5555555555556667899999999999999999999988653 48999999842000000000011 13778887 876


Q ss_pred             CchhhcccCCCccEEEEcCC
Q 024665          203 HPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       203 ~~~~~~~~~~~fD~V~~d~p  222 (264)
                      .+.+     .++|+|+||+.
T Consensus       155 ~l~~-----~~~D~ivcDig  169 (321)
T 3lkz_A          155 YRPS-----ECCDTLLCDIG  169 (321)
T ss_dssp             SSCC-----CCCSEEEECCC
T ss_pred             hCCC-----CCCCEEEEECc
Confidence            6543     57999999998

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.46  E-value=1.2e-06  Score=78.43  Aligned_cols=74  Identities=11%  Similarity=0.012  Sum_probs=57.4

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHh---hcCCCeEEEEcCCCCchhhcccCCCccEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA---KKRTNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a---~~~~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      +.+ .+|||+|||+|.++..+++.. |..+++++|+ +.+++.+.+..   ....+|+++++|+.+..     .+.||+|
T Consensus       166 ~~~-~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~D~v  237 (334)
T 2ip2_A          166 FRG-RSFVDVGGGSGELTKAILQAE-PSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQEV-----PSNGDIY  237 (334)
T ss_dssp             CTT-CEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTCC-----CSSCSEE
T ss_pred             CCC-CEEEEeCCCchHHHHHHHHHC-CCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCCC-----CCCCCEE
Confidence            566 899999999999999999885 5679999999 76654443332   23458999999998732     2579999


Q ss_pred             EEcCC
Q 024665          218 FSDVA  222 (264)
Q Consensus       218 ~~d~p  222 (264)
                      ++...
T Consensus       238 ~~~~v  242 (334)
T 2ip2_A          238 LLSRI  242 (334)
T ss_dssp             EEESC
T ss_pred             EEchh
Confidence            98655

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.45  E-value=1.8e-06  Score=77.79  Aligned_cols=82  Identities=12%  Similarity=0.090  Sum_probs=60.5

Q ss_pred             cccCCCC-CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcccCC
Q 024665          137 DNIWIKP-GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVG  212 (264)
Q Consensus       137 ~~~~l~~-g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~~~  212 (264)
                      +.+.+.+ ..+|||+|||+|.++..+++.. |..+++++|+ +.+++...+....   ..+|+++.+|+.+.+.+  ..+
T Consensus       172 ~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~  247 (352)
T 3mcz_A          172 SELGVFARARTVIDLAGGHGTYLAQVLRRH-PQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNF--EGG  247 (352)
T ss_dssp             HTCGGGTTCCEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGG--TTC
T ss_pred             HhCCCcCCCCEEEEeCCCcCHHHHHHHHhC-CCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCccc--CCC
Confidence            3334666 8899999999999999999885 5679999999 5554444433322   23799999999886521  345


Q ss_pred             CccEEEEcCC
Q 024665          213 MVDVIFSDVA  222 (264)
Q Consensus       213 ~fD~V~~d~p  222 (264)
                      .||+|++...
T Consensus       248 ~~D~v~~~~v  257 (352)
T 3mcz_A          248 AADVVMLNDC  257 (352)
T ss_dssp             CEEEEEEESC
T ss_pred             CccEEEEecc
Confidence            7999998654

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.45  E-value=1.1e-06  Score=76.04  Aligned_cols=73  Identities=11%  Similarity=0.060  Sum_probs=58.3

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      .+..+|||||||+|.+++.+.    +...|+|+|+|+.+++-+.+.... ..+..+.+.|....+    +...+|+|++.
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~----~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~----~~~~~DvvLll  175 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER----GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAP----PAEAGDLALIF  175 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT----TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSC----CCCBCSEEEEE
T ss_pred             CCCCeEEEecCCccHHHHHhc----cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCC----CCCCcchHHHH
Confidence            467799999999999999987    577999999999887665555443 347889999988654    34689999987


Q ss_pred             CC
Q 024665          221 VA  222 (264)
Q Consensus       221 ~p  222 (264)
                      ..
T Consensus       176 k~  177 (253)
T 3frh_A          176 KL  177 (253)
T ss_dssp             SC
T ss_pred             HH
Confidence            55

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.44  E-value=1.5e-06  Score=78.46  Aligned_cols=76  Identities=16%  Similarity=0.099  Sum_probs=58.6

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcccCCCccE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVDV  216 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~~~~fD~  216 (264)
                      .+.++.+|||+|||+|.++..+++.. +..+++++|+ +.+++.+.+....   ..+|++++.|+.+..     ...||+
T Consensus       180 ~~~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~D~  252 (360)
T 1tw3_A          180 DWTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL-----PRKADA  252 (360)
T ss_dssp             CCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC-----SSCEEE
T ss_pred             CCccCcEEEEeCCcCcHHHHHHHHhC-CCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCC-----CCCccE
Confidence            46788999999999999999999885 5679999999 7665554444332   238999999997632     235999


Q ss_pred             EEEcCC
Q 024665          217 IFSDVA  222 (264)
Q Consensus       217 V~~d~p  222 (264)
                      |++...
T Consensus       253 v~~~~v  258 (360)
T 1tw3_A          253 IILSFV  258 (360)
T ss_dssp             EEEESC
T ss_pred             EEEccc
Confidence            998654

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=98.44  E-value=2e-07  Score=84.02  Aligned_cols=93  Identities=16%  Similarity=0.211  Sum_probs=72.5

Q ss_pred             chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCc
Q 024665          125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHP  204 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~  204 (264)
                      .+-|..+++..|.   ++|+..+||+.||.|..|..+++.+++.++|||+|.++.+++.. + .....++++++.+..++
T Consensus        42 ~pVLl~Evl~~L~---i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A-~-rL~~~Rv~lv~~nF~~l  116 (347)
T 3tka_A           42 TTVLLDEAVNGLN---IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVA-K-TIDDPRFSIIHGPFSAL  116 (347)
T ss_dssp             CCTTTHHHHHHTC---CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHH-T-TCCCTTEEEEESCGGGH
T ss_pred             ccccHHHHHHhhC---CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHH-H-hhcCCcEEEEeCCHHHH
Confidence            4556677776666   89999999999999999999999998999999999999775433 2 11234899999999887


Q ss_pred             hhhcc---cCCCccEEEEcCC
Q 024665          205 AKYRM---LVGMVDVIFSDVA  222 (264)
Q Consensus       205 ~~~~~---~~~~fD~V~~d~p  222 (264)
                      ..+-.   +..++|.|++|..
T Consensus       117 ~~~L~~~g~~~~vDgILfDLG  137 (347)
T 3tka_A          117 GEYVAERDLIGKIDGILLDLG  137 (347)
T ss_dssp             HHHHHHTTCTTCEEEEEEECS
T ss_pred             HHHHHhcCCCCcccEEEECCc
Confidence            64311   1136999999977

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.43  E-value=3e-06  Score=77.22  Aligned_cols=76  Identities=13%  Similarity=0.048  Sum_probs=59.5

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcccCCCccE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVDV  216 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~~~~fD~  216 (264)
                      .+.+..+|||+|||+|.++..+++.. |..+++++|+ +.+++...+....   ..+|+++..|+.++.     ...||+
T Consensus       199 ~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-----p~~~D~  271 (369)
T 3gwz_A          199 DFSGAATAVDIGGGRGSLMAAVLDAF-PGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFETI-----PDGADV  271 (369)
T ss_dssp             CCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTCC-----CSSCSE
T ss_pred             CCccCcEEEEeCCCccHHHHHHHHHC-CCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCCC-----CCCceE
Confidence            46778999999999999999999984 6779999999 8776555444332   358999999998432     237999


Q ss_pred             EEEcCC
Q 024665          217 IFSDVA  222 (264)
Q Consensus       217 V~~d~p  222 (264)
                      |++...
T Consensus       272 v~~~~v  277 (369)
T 3gwz_A          272 YLIKHV  277 (369)
T ss_dssp             EEEESC
T ss_pred             EEhhhh
Confidence            998654

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.39  E-value=2.5e-06  Score=77.61  Aligned_cols=76  Identities=9%  Similarity=0.033  Sum_probs=58.8

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCCCch-hhcccCCCccEE
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPA-KYRMLVGMVDVI  217 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~~~~-~~~~~~~~fD~V  217 (264)
                      .+..+|||||||+|.++..+++.. |..+|+++|+ +.+++.+.+.....   .+|+++.+|+.+.. +   +.+.||+|
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~p~~~D~v  252 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYN-KEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVP---FPTGFDAV  252 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHS-TTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCC---CCCCCSEE
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCC---CCCCcCEE
Confidence            456799999999999999999885 5779999999 87766555554332   37999999998752 1   12689999


Q ss_pred             EEcCC
Q 024665          218 FSDVA  222 (264)
Q Consensus       218 ~~d~p  222 (264)
                      ++...
T Consensus       253 ~~~~v  257 (363)
T 3dp7_A          253 WMSQF  257 (363)
T ss_dssp             EEESC
T ss_pred             EEech
Confidence            98544

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.38  E-value=1.6e-06  Score=78.97  Aligned_cols=70  Identities=10%  Similarity=0.072  Sum_probs=56.1

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      +.+..+|||+|||+|.++..+++.. +..+++++|+ +.+    ++.+...++|+++++|+.+..      ..||+|++.
T Consensus       207 ~~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~----~~~a~~~~~v~~~~~d~~~~~------~~~D~v~~~  274 (372)
T 1fp1_D          207 FEGISTLVDVGGGSGRNLELIISKY-PLIKGINFDL-PQV----IENAPPLSGIEHVGGDMFASV------PQGDAMILK  274 (372)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHH----HTTCCCCTTEEEEECCTTTCC------CCEEEEEEE
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHHC-CCCeEEEeCh-HHH----HHhhhhcCCCEEEeCCcccCC------CCCCEEEEe
Confidence            6678899999999999999999985 5678999999 755    344544568999999998732      239999986


Q ss_pred             CC
Q 024665          221 VA  222 (264)
Q Consensus       221 ~p  222 (264)
                      ..
T Consensus       275 ~~  276 (372)
T 1fp1_D          275 AV  276 (372)
T ss_dssp             SS
T ss_pred             cc
Confidence            55

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.38  E-value=7.7e-07  Score=78.40  Aligned_cols=76  Identities=18%  Similarity=0.130  Sum_probs=54.6

Q ss_pred             CCCEEEEEcccCCh----HHHHHHHHhCC---CCEEEEEeCChHHHHHHHHHhh--------------------------
Q 024665          143 PGARVLYLGAASGT----TVSHVSDIVGP---NGVVYAVEFSHRSGRDLVNMAK--------------------------  189 (264)
Q Consensus       143 ~g~~VLDlG~G~G~----~s~~la~~~~~---~g~V~avD~s~~~~~~l~~~a~--------------------------  189 (264)
                      +..+|||+|||||.    +++.|++.++.   ..+|+|+|+|+.|++.+.+..-                          
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            45689999999998    66667776543   2489999999988766554320                          


Q ss_pred             -------cCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          190 -------KRTNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       190 -------~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                             .+.+|+|.+.|+.+++ + ...++||+|+|.
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~-~-~~~~~fDlI~cr  220 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQ-Y-NVPGPFDAIFCR  220 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSS-C-CCCCCEEEEEEC
T ss_pred             ceeechhhcccCeEEecccCCCC-C-CcCCCeeEEEEC
Confidence                   0136999999998842 1 113689999984

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.36  E-value=3.1e-07  Score=76.66  Aligned_cols=60  Identities=13%  Similarity=0.062  Sum_probs=48.7

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      +.++.+|||+|||+|.++..++      .+|+++|+|+.             ++++++.|+.+.+   ...++||+|++.
T Consensus        65 ~~~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~-------------~~~~~~~d~~~~~---~~~~~fD~v~~~  122 (215)
T 2zfu_A           65 RPASLVVADFGCGDCRLASSIR------NPVHCFDLASL-------------DPRVTVCDMAQVP---LEDESVDVAVFC  122 (215)
T ss_dssp             SCTTSCEEEETCTTCHHHHHCC------SCEEEEESSCS-------------STTEEESCTTSCS---CCTTCEEEEEEE
T ss_pred             cCCCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC-------------CceEEEeccccCC---CCCCCEeEEEEe
Confidence            4678899999999999988874      47999999974             5778999998754   234689999987


Q ss_pred             CC
Q 024665          221 VA  222 (264)
Q Consensus       221 ~p  222 (264)
                      ..
T Consensus       123 ~~  124 (215)
T 2zfu_A          123 LS  124 (215)
T ss_dssp             SC
T ss_pred             hh
Confidence            65

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.35  E-value=9.4e-07  Score=77.26  Aligned_cols=76  Identities=11%  Similarity=-0.040  Sum_probs=60.3

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      .+-.+|||||||+|-+++.++.. .+..+|+|+|+++++++-..+++.. ..+..+.+.|.....    +...+|+|++.
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~-~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~----p~~~~DvaL~l  205 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGL-PAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDR----LDEPADVTLLL  205 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTC-CTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSC----CCSCCSEEEET
T ss_pred             CCCceeeeeccCccHHHHHHHhh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccC----CCCCcchHHHH
Confidence            44669999999999999999875 3678999999999887555555443 347889999987644    34789999998


Q ss_pred             CC
Q 024665          221 VA  222 (264)
Q Consensus       221 ~p  222 (264)
                      ..
T Consensus       206 kt  207 (281)
T 3lcv_B          206 KT  207 (281)
T ss_dssp             TC
T ss_pred             HH
Confidence            77

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.34  E-value=1.1e-06  Score=85.59  Aligned_cols=76  Identities=18%  Similarity=0.166  Sum_probs=56.0

Q ss_pred             CCCEEEEEcccCChH---HHHHHHHhCCCCEEEEEeCChHH--HHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEE
Q 024665          143 PGARVLYLGAASGTT---VSHVSDIVGPNGVVYAVEFSHRS--GRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~---s~~la~~~~~~g~V~avD~s~~~--~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      ....|||+|||+|.+   ++.+++......+|||||.|+.+  ++++++.+.....|++|++|+++..    +++++|+|
T Consensus       357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~~v~~N~~~dkVtVI~gd~eev~----LPEKVDII  432 (637)
T 4gqb_A          357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEWGSQVTVVSSDMREWV----APEKADII  432 (637)
T ss_dssp             CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHHHHHHHTTGGGEEEEESCTTTCC----CSSCEEEE
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHHHHhccCCCeEEEEeCcceecc----CCcccCEE
Confidence            345799999999999   44555543333479999999754  3444455545558999999999975    45899999


Q ss_pred             EEcCC
Q 024665          218 FSDVA  222 (264)
Q Consensus       218 ~~d~p  222 (264)
                      ++..-
T Consensus       433 VSEwM  437 (637)
T 4gqb_A          433 VSELL  437 (637)
T ss_dssp             ECCCC
T ss_pred             EEEcC
Confidence            98765

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=98.33  E-value=7.9e-07  Score=80.31  Aligned_cols=76  Identities=12%  Similarity=-0.019  Sum_probs=54.7

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      .+.+..+|||+|||+|.++..+++.. +..+++++|+++.+.+...+.+....+|+++++|+.+..     . .||+|++
T Consensus       181 ~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-----p-~~D~v~~  253 (348)
T 3lst_A          181 DFPATGTVADVGGGRGGFLLTVLREH-PGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREV-----P-HADVHVL  253 (348)
T ss_dssp             CCCSSEEEEEETCTTSHHHHHHHHHC-TTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTTTCC-----C-CCSEEEE
T ss_pred             CccCCceEEEECCccCHHHHHHHHHC-CCCEEEEecCHHHhhcccccccCCCCCeEEEecCCCCCC-----C-CCcEEEE
Confidence            47788999999999999999999885 567899999954321000000112347999999997432     2 8999998


Q ss_pred             cCC
Q 024665          220 DVA  222 (264)
Q Consensus       220 d~p  222 (264)
                      ...
T Consensus       254 ~~v  256 (348)
T 3lst_A          254 KRI  256 (348)
T ss_dssp             ESC
T ss_pred             ehh
Confidence            654

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.32  E-value=2.2e-06  Score=77.45  Aligned_cols=85  Identities=13%  Similarity=0.136  Sum_probs=63.3

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      +.+..+|||+|||+|.++..+++.. |..+|+++|+ +.+    ++.++...+|+++++|+.+..      ..||+|++.
T Consensus       186 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~----~~~a~~~~~v~~~~~d~~~~~------p~~D~v~~~  253 (352)
T 1fp2_A          186 FDGLESIVDVGGGTGTTAKIICETF-PKLKCIVFDR-PQV----VENLSGSNNLTYVGGDMFTSI------PNADAVLLK  253 (352)
T ss_dssp             HTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHH----HTTCCCBTTEEEEECCTTTCC------CCCSEEEEE
T ss_pred             cccCceEEEeCCCccHHHHHHHHHC-CCCeEEEeeC-HHH----HhhcccCCCcEEEeccccCCC------CCccEEEee
Confidence            6677899999999999999999885 5679999999 865    444544467999999997632      249999986


Q ss_pred             CC-----Cch--HHHHHHHHHhCC
Q 024665          221 VA-----QPD--QVCFLCLILFQP  237 (264)
Q Consensus       221 ~p-----~~~--~~~~~~~~~l~~  237 (264)
                      ..     .++  .........++|
T Consensus       254 ~~lh~~~d~~~~~~l~~~~~~L~p  277 (352)
T 1fp2_A          254 YILHNWTDKDCLRILKKCKEAVTN  277 (352)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHHSG
T ss_pred             hhhccCCHHHHHHHHHHHHHhCCC
Confidence            55     222  334445566677

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.30  E-value=1.3e-06  Score=69.65  Aligned_cols=82  Identities=13%  Similarity=0.078  Sum_probs=57.2

Q ss_pred             chHHHHHHHhcccccCCCCCCEEEEEcccCC-hHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCC
Q 024665          125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASG-TTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARH  203 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G-~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~  203 (264)
                      .+++...+...+.+ ..++..+|||+|||+| ..+..|++..  ...|+|+|+++.++.             +++.|+.+
T Consensus        18 ~~~m~e~LaeYI~~-~~~~~~rVlEVG~G~g~~vA~~La~~~--g~~V~atDInp~Av~-------------~v~dDiF~   81 (153)
T 2k4m_A           18 GSHMWNDLAVYIIR-CSGPGTRVVEVGAGRFLYVSDYIRKHS--KVDLVLTDIKPSHGG-------------IVRDDITS   81 (153)
T ss_dssp             CCHHHHHHHHHHHH-HSCSSSEEEEETCTTCCHHHHHHHHHS--CCEEEEECSSCSSTT-------------EECCCSSS
T ss_pred             hhhHHHHHHHHHHh-cCCCCCcEEEEccCCChHHHHHHHHhC--CCeEEEEECCccccc-------------eEEccCCC
Confidence            45554444444432 2456689999999999 5999999862  457999999985422             88999988


Q ss_pred             chhhcccCCCccEE-EEcCCCc
Q 024665          204 PAKYRMLVGMVDVI-FSDVAQP  224 (264)
Q Consensus       204 ~~~~~~~~~~fD~V-~~d~p~~  224 (264)
                      +..  .+-..||+| ..++|..
T Consensus        82 P~~--~~Y~~~DLIYsirPP~E  101 (153)
T 2k4m_A           82 PRM--EIYRGAALIYSIRPPAE  101 (153)
T ss_dssp             CCH--HHHTTEEEEEEESCCTT
T ss_pred             Ccc--cccCCcCEEEEcCCCHH
Confidence            653  122589999 4666643

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.29  E-value=4.5e-06  Score=76.12  Aligned_cols=70  Identities=14%  Similarity=0.109  Sum_probs=56.1

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      +.+..+|||||||+|.++..+++.. |..+++++|+ +.+    ++.+....+|+++.+|+.++.    . .. |+|++.
T Consensus       201 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~----~~~a~~~~~v~~~~~d~~~~~----p-~~-D~v~~~  268 (368)
T 3reo_A          201 FEGLTTIVDVGGGTGAVASMIVAKY-PSINAINFDL-PHV----IQDAPAFSGVEHLGGDMFDGV----P-KG-DAIFIK  268 (368)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHH----HTTCCCCTTEEEEECCTTTCC----C-CC-SEEEEE
T ss_pred             ccCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeh-HHH----HHhhhhcCCCEEEecCCCCCC----C-CC-CEEEEe
Confidence            6678899999999999999999986 6779999999 654    455555579999999998732    1 23 999986


Q ss_pred             CC
Q 024665          221 VA  222 (264)
Q Consensus       221 ~p  222 (264)
                      ..
T Consensus       269 ~v  270 (368)
T 3reo_A          269 WI  270 (368)
T ss_dssp             SC
T ss_pred             ch
Confidence            55

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.26  E-value=2.6e-06  Score=81.82  Aligned_cols=80  Identities=11%  Similarity=-0.025  Sum_probs=59.0

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhC--CCCEEEEEeCChHHHHHHHHHhh---cC-CCeEEEEcCCCCc--hhhcccCC
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVG--PNGVVYAVEFSHRSGRDLVNMAK---KR-TNVIPIIEDARHP--AKYRMLVG  212 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~--~~g~V~avD~s~~~~~~l~~~a~---~~-~nV~~i~~D~~~~--~~~~~~~~  212 (264)
                      ..++.+|||.+||||.+.+.+++.+.  ....+||+|+++.+++-+.....   .. .++.++++|....  +.  ....
T Consensus       219 ~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~--~~~~  296 (542)
T 3lkd_A          219 DKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPT--QEPT  296 (542)
T ss_dssp             TCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCC--SSCC
T ss_pred             CCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccc--cccc
Confidence            45788999999999999999998863  24689999999877533222111   11 3678999998764  21  1246


Q ss_pred             CccEEEEcCC
Q 024665          213 MVDVIFSDVA  222 (264)
Q Consensus       213 ~fD~V~~d~p  222 (264)
                      +||+|++|||
T Consensus       297 ~fD~IvaNPP  306 (542)
T 3lkd_A          297 NFDGVLMNPP  306 (542)
T ss_dssp             CBSEEEECCC
T ss_pred             cccEEEecCC
Confidence            8999999999

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.26  E-value=4.7e-06  Score=70.14  Aligned_cols=94  Identities=16%  Similarity=0.133  Sum_probs=64.0

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHH---HHHHhhc--CCCeEEEEcCCCCc-----------
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRD---LVNMAKK--RTNVIPIIEDARHP-----------  204 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~---l~~~a~~--~~nV~~i~~D~~~~-----------  204 (264)
                      +++..+|||+||  |+.|+.+|+.  +.++|++||.+++.++.   .++.+..  ..+|+++++|+.+.           
T Consensus        28 l~~a~~VLEiGt--GySTl~lA~~--~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~  103 (202)
T 3cvo_A           28 YEEAEVILEYGS--GGSTVVAAEL--PGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAK  103 (202)
T ss_dssp             HHHCSEEEEESC--SHHHHHHHTS--TTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTT
T ss_pred             hhCCCEEEEECc--hHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchh
Confidence            446679999998  5888888874  36899999999766433   3344433  45899999998653           


Q ss_pred             ----hhhc----cc--CCCccEEEEcCCCchHHHHHHHHHhCCC
Q 024665          205 ----AKYR----ML--VGMVDVIFSDVAQPDQVCFLCLILFQPI  238 (264)
Q Consensus       205 ----~~~~----~~--~~~fD~V~~d~p~~~~~~~~~~~~l~~~  238 (264)
                          ..|.    ..  .++||+||.|...........+..++++
T Consensus       104 ~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~~~~~~~~l~~l~~G  147 (202)
T 3cvo_A          104 WRSYPDYPLAVWRTEGFRHPDVVLVDGRFRVGCALATAFSITRP  147 (202)
T ss_dssp             GGGTTHHHHGGGGCTTCCCCSEEEECSSSHHHHHHHHHHHCSSC
T ss_pred             hhhHHHHhhhhhccccCCCCCEEEEeCCCchhHHHHHHHhcCCC
Confidence                1111    11  2689999999875444444555666665

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=98.26  E-value=3.3e-07  Score=81.03  Aligned_cols=96  Identities=16%  Similarity=0.121  Sum_probs=55.5

Q ss_pred             chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCc
Q 024665          125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHP  204 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~  204 (264)
                      +|.-+.+++...++..++++.+||||||++|.|+..+++.. +...|+++|+...+....+.......++.....++ +.
T Consensus        63 rSRaa~KL~ei~ek~l~~~g~~vlDLGaaPGgWsqva~~~~-gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~-di  140 (300)
T 3eld_A           63 VSRGAAKIRWLHERGYLRITGRVLDLGCGRGGWSYYAAAQK-EVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKS-NV  140 (300)
T ss_dssp             SSTTHHHHHHHHHHTSCCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSC-CT
T ss_pred             cchHHHHHHHHHHhCCCCCCCEEEEcCCCCCHHHHHHHHhc-CCceeeeEEeccccccccccccccCCceEEeecCc-ee
Confidence            33333334333333346799999999999999999999864 34579999997421000000000011444444332 21


Q ss_pred             hhhcccCCCccEEEEcCCCc
Q 024665          205 AKYRMLVGMVDVIFSDVAQP  224 (264)
Q Consensus       205 ~~~~~~~~~fD~V~~d~p~~  224 (264)
                      ..  ....++|+|++|+++.
T Consensus       141 ~~--l~~~~~DlVlsD~APn  158 (300)
T 3eld_A          141 FT--MPTEPSDTLLCDIGES  158 (300)
T ss_dssp             TT--SCCCCCSEEEECCCCC
T ss_pred             ee--cCCCCcCEEeecCcCC
Confidence            11  2235899999998843

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.23  E-value=3.5e-06  Score=74.19  Aligned_cols=94  Identities=13%  Similarity=0.035  Sum_probs=61.8

Q ss_pred             CEEEEEcccC--ChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhh---cccCCCcc--
Q 024665          145 ARVLYLGAAS--GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKY---RMLVGMVD--  215 (264)
Q Consensus       145 ~~VLDlG~G~--G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~---~~~~~~fD--  215 (264)
                      .+|||||||+  +..+..+++...|..+|++||.|+.|+....+.....  .++++++.|++++...   ......||  
T Consensus        80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D~~  159 (277)
T 3giw_A           80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLDLT  159 (277)
T ss_dssp             CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCCTT
T ss_pred             CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccCcC
Confidence            6899999998  4466777777778899999999998865544443322  2699999999986310   00012344  


Q ss_pred             ---EEEEcCC---Cc-----hHHHHHHHHHhCCC
Q 024665          216 ---VIFSDVA---QP-----DQVCFLCLILFQPI  238 (264)
Q Consensus       216 ---~V~~d~p---~~-----~~~~~~~~~~l~~~  238 (264)
                         .|+++..   .+     ..........+.|+
T Consensus       160 ~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PG  193 (277)
T 3giw_A          160 RPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSG  193 (277)
T ss_dssp             SCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTT
T ss_pred             CcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCC
Confidence               5667665   12     23444455666776

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.21  E-value=2.1e-06  Score=85.39  Aligned_cols=81  Identities=14%  Similarity=-0.008  Sum_probs=55.4

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhC--CCCEEEEEeCChHHHHHHH-HHhhcC----C---CeEEEEcCCCCchhhccc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVG--PNGVVYAVEFSHRSGRDLV-NMAKKR----T---NVIPIIEDARHPAKYRML  210 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~--~~g~V~avD~s~~~~~~l~-~~a~~~----~---nV~~i~~D~~~~~~~~~~  210 (264)
                      +.++.+|||.|||+|.+.+.+++.+.  ...+++|+|+++.+++-+. .++...    .   ++.+...|+.++..  ..
T Consensus       319 l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~--~~  396 (878)
T 3s1s_A          319 LTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNP--ED  396 (878)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCG--GG
T ss_pred             CCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccc--cc
Confidence            45688999999999999999998764  1357999999987653331 222211    1   23555666655321  12


Q ss_pred             CCCccEEEEcCCC
Q 024665          211 VGMVDVIFSDVAQ  223 (264)
Q Consensus       211 ~~~fD~V~~d~p~  223 (264)
                      ..+||+|++|||.
T Consensus       397 ~~kFDVVIgNPPY  409 (878)
T 3s1s_A          397 FANVSVVVMNPPY  409 (878)
T ss_dssp             GTTEEEEEECCBC
T ss_pred             cCCCCEEEECCCc
Confidence            4689999999993

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.20  E-value=8.2e-06  Score=74.29  Aligned_cols=70  Identities=14%  Similarity=0.118  Sum_probs=55.9

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      +.+..+|||||||+|.++..+++.. |..+++++|+ +.+    ++.++..++|+++.+|+.++.    . .. |+|++.
T Consensus       199 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~----~~~a~~~~~v~~~~~D~~~~~----p-~~-D~v~~~  266 (364)
T 3p9c_A          199 FEGLGTLVDVGGGVGATVAAIAAHY-PTIKGVNFDL-PHV----ISEAPQFPGVTHVGGDMFKEV----P-SG-DTILMK  266 (364)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHH----HTTCCCCTTEEEEECCTTTCC----C-CC-SEEEEE
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHHC-CCCeEEEecC-HHH----HHhhhhcCCeEEEeCCcCCCC----C-CC-CEEEeh
Confidence            6678999999999999999999886 6778999999 644    455555679999999998732    1 23 999975


Q ss_pred             CC
Q 024665          221 VA  222 (264)
Q Consensus       221 ~p  222 (264)
                      ..
T Consensus       267 ~v  268 (364)
T 3p9c_A          267 WI  268 (364)
T ss_dssp             SC
T ss_pred             HH
Confidence            54

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=98.17  E-value=1.2e-05  Score=73.28  Aligned_cols=75  Identities=11%  Similarity=-0.001  Sum_probs=59.1

Q ss_pred             hHHHHHHHhcccccCCC------CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEc
Q 024665          126 SKLAAAVLGGVDNIWIK------PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIE  199 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~------~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~  199 (264)
                      ..++..|+..++   +.      +++.|||+|.|+|.+|..|++... ..+|++||++++++..+.+.. ...|++++++
T Consensus        38 ~~i~~~Iv~~~~---l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~-~~~vvavE~D~~l~~~L~~~~-~~~~l~ii~~  112 (353)
T 1i4w_A           38 PTVYNKIFDKLD---LTKTYKHPEELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKF-EGSPLQILKR  112 (353)
T ss_dssp             HHHHHHHHHHHC---GGGTCCCTTTCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHT-TTSSCEEECS
T ss_pred             HHHHHHHHHhcc---CCcccCcCCCCEEEEECCCCCHHHHHHHhhCC-CCEEEEEecCHHHHHHHHHhc-cCCCEEEEEC
Confidence            356666765554   44      468999999999999999998743 348999999998877766655 3469999999


Q ss_pred             CCCCch
Q 024665          200 DARHPA  205 (264)
Q Consensus       200 D~~~~~  205 (264)
                      |+.++.
T Consensus       113 D~l~~~  118 (353)
T 1i4w_A          113 DPYDWS  118 (353)
T ss_dssp             CTTCHH
T ss_pred             Cccchh
Confidence            998765

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.17  E-value=1.2e-06  Score=84.26  Aligned_cols=79  Identities=14%  Similarity=-0.016  Sum_probs=54.0

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCC--------------CCEEEEEeCChHHHHHHHHHhh---cCCCeEEEEcCCCC
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGP--------------NGVVYAVEFSHRSGRDLVNMAK---KRTNVIPIIEDARH  203 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~--------------~g~V~avD~s~~~~~~l~~~a~---~~~nV~~i~~D~~~  203 (264)
                      ++++ +|||.+||||.+.+.+++.+..              ...+|++|+++.+++-+.....   ...+|.++++|...
T Consensus       243 p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~  321 (544)
T 3khk_A          243 PYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFL  321 (544)
T ss_dssp             CCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTT
T ss_pred             cCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhc
Confidence            5555 9999999999999988765421              3579999999877533222211   12244447888765


Q ss_pred             chhhcccCCCccEEEEcCC
Q 024665          204 PAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       204 ~~~~~~~~~~fD~V~~d~p  222 (264)
                      .+.  ....+||+|++|||
T Consensus       322 ~~~--~~~~~fD~Iv~NPP  338 (544)
T 3khk_A          322 DDQ--HPDLRADFVMTNPP  338 (544)
T ss_dssp             SCS--CTTCCEEEEEECCC
T ss_pred             Ccc--cccccccEEEECCC
Confidence            432  12358999999999

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.16  E-value=1.8e-05  Score=71.78  Aligned_cols=76  Identities=8%  Similarity=-0.036  Sum_probs=56.3

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc--CCCeEEEEcCCCCchhhcccCCCccEE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--RTNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~--~~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      .+.+..+|||||||+|.++..+++.. |..+++..|. +.+++...+....  ..+|+++.+|+.+.+     ...+|+|
T Consensus       176 ~~~~~~~v~DvGgG~G~~~~~l~~~~-p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~-----~~~~D~~  248 (353)
T 4a6d_A          176 DLSVFPLMCDLGGGAGALAKECMSLY-PGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDP-----LPEADLY  248 (353)
T ss_dssp             CGGGCSEEEEETCTTSHHHHHHHHHC-SSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSC-----CCCCSEE
T ss_pred             CcccCCeEEeeCCCCCHHHHHHHHhC-CCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCC-----CCCceEE
Confidence            37778899999999999999999985 6778888887 5554443333221  348999999987643     2468999


Q ss_pred             EEcCC
Q 024665          218 FSDVA  222 (264)
Q Consensus       218 ~~d~p  222 (264)
                      ++.-.
T Consensus       249 ~~~~v  253 (353)
T 4a6d_A          249 ILARV  253 (353)
T ss_dssp             EEESS
T ss_pred             Eeeee
Confidence            87544

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.10  E-value=2.5e-06  Score=68.95  Aligned_cols=65  Identities=17%  Similarity=0.101  Sum_probs=47.6

Q ss_pred             ccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEE
Q 024665          138 NIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       138 ~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      .+.++++++|||++||+                | .+|+|+.|++.+.+...  .++++++.|+.+++......++||+|
T Consensus         7 ~~g~~~g~~vL~~~~g~----------------v-~vD~s~~ml~~a~~~~~--~~~~~~~~d~~~~~~~~~~~~~fD~V   67 (176)
T 2ld4_A            7 DFGISAGQFVAVVWDKS----------------S-PVEALKGLVDKLQALTG--NEGRVSVENIKQLLQSAHKESSFDII   67 (176)
T ss_dssp             TTTCCTTSEEEEEECTT----------------S-CHHHHHHHHHHHHHHTT--TTSEEEEEEGGGGGGGCCCSSCEEEE
T ss_pred             ccCCCCCCEEEEecCCc----------------e-eeeCCHHHHHHHHHhcc--cCcEEEEechhcCccccCCCCCEeEE
Confidence            44589999999999986                2 28999988766555432  36999999998765211135689999


Q ss_pred             EEcC
Q 024665          218 FSDV  221 (264)
Q Consensus       218 ~~d~  221 (264)
                      ++..
T Consensus        68 ~~~~   71 (176)
T 2ld4_A           68 LSGL   71 (176)
T ss_dssp             EECC
T ss_pred             EECC
Confidence            9864

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.06  E-value=1.1e-05  Score=72.98  Aligned_cols=70  Identities=11%  Similarity=0.107  Sum_probs=55.2

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      +.+..+|||+|||+|.++..+++.. |..+++++|+ +.+    ++.+....+|+++++|+.+..      ..||+|++.
T Consensus       191 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~----~~~a~~~~~v~~~~~d~~~~~------~~~D~v~~~  258 (358)
T 1zg3_A          191 FEGLESLVDVGGGTGGVTKLIHEIF-PHLKCTVFDQ-PQV----VGNLTGNENLNFVGGDMFKSI------PSADAVLLK  258 (358)
T ss_dssp             HHTCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEEC-HHH----HSSCCCCSSEEEEECCTTTCC------CCCSEEEEE
T ss_pred             ccCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEecc-HHH----HhhcccCCCcEEEeCccCCCC------CCceEEEEc
Confidence            4567899999999999999999985 5678999999 554    344444458999999998721      259999986


Q ss_pred             CC
Q 024665          221 VA  222 (264)
Q Consensus       221 ~p  222 (264)
                      ..
T Consensus       259 ~v  260 (358)
T 1zg3_A          259 WV  260 (358)
T ss_dssp             SC
T ss_pred             cc
Confidence            55

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.06  E-value=4.1e-05  Score=67.95  Aligned_cols=103  Identities=18%  Similarity=0.161  Sum_probs=70.8

Q ss_pred             CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHh-------hcCCCeEEEEcCCCCchhhcccCCCccE
Q 024665          144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA-------KKRTNVIPIIEDARHPAKYRMLVGMVDV  216 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a-------~~~~nV~~i~~D~~~~~~~~~~~~~fD~  216 (264)
                      -.+||=+|-|.|.++..+++.- +..+|+.||+++.+++-..+.-       ...++++++++|+..+..  ...++||+
T Consensus        84 pk~VLIiGgGdG~~~revlk~~-~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~--~~~~~yDv  160 (294)
T 3o4f_A           84 AKHVLIIGGGDGAMLREVTRHK-NVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVN--QTSQTFDV  160 (294)
T ss_dssp             CCEEEEESCTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTS--CSSCCEEE
T ss_pred             CCeEEEECCCchHHHHHHHHcC-CcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHh--hccccCCE
Confidence            4689999999999999998763 4468999999987764443321       124589999999998764  24568999


Q ss_pred             EEEcCCCchHHHHHHHHHhCCCcHHHHHHHHHHhh-cchh
Q 024665          217 IFSDVAQPDQVCFLCLILFQPIVINNLQSVNNETK-GGIF  255 (264)
Q Consensus       217 V~~d~p~~~~~~~~~~~~l~~~~~~~l~~~~~~Lk-~g~f  255 (264)
                      |++|.+.|...      +...-+.+.+..+.+.|+ +|++
T Consensus       161 Ii~D~~dp~~~------~~~L~t~eFy~~~~~~L~p~Gv~  194 (294)
T 3o4f_A          161 IISDCTDPIGP------GESLFTSAFYEGCKRCLNPGGIF  194 (294)
T ss_dssp             EEESCCCCCCT------TCCSSCCHHHHHHHHTEEEEEEE
T ss_pred             EEEeCCCcCCC------chhhcCHHHHHHHHHHhCCCCEE
Confidence            99998865321      011124445555555555 4444

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.04  E-value=8.5e-06  Score=78.07  Aligned_cols=82  Identities=15%  Similarity=-0.019  Sum_probs=55.6

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCC------------CCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCc
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGP------------NGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHP  204 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~------------~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~  204 (264)
                      .++++++|+|-+||||.+.+.+.+.+..            ...+|++|+++.+.+- ..++..   ..+..+.++|....
T Consensus       214 ~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~l-a~mNl~lhg~~~~~I~~~dtL~~  292 (530)
T 3ufb_A          214 DPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLL-VQMNLLLHGLEYPRIDPENSLRF  292 (530)
T ss_dssp             CCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHH-HHHHHHHHTCSCCEEECSCTTCS
T ss_pred             ccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHH-HHHHHHhcCCccccccccccccC
Confidence            3788999999999999999988776532            2369999999866422 222211   12345677887653


Q ss_pred             hhhc-ccCCCccEEEEcCC
Q 024665          205 AKYR-MLVGMVDVIFSDVA  222 (264)
Q Consensus       205 ~~~~-~~~~~fD~V~~d~p  222 (264)
                      +... ....+||+|++|||
T Consensus       293 ~~~~~~~~~~fD~Il~NPP  311 (530)
T 3ufb_A          293 PLREMGDKDRVDVILTNPP  311 (530)
T ss_dssp             CGGGCCGGGCBSEEEECCC
T ss_pred             chhhhcccccceEEEecCC
Confidence            2211 12247999999999

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.01  E-value=6.8e-06  Score=80.58  Aligned_cols=79  Identities=19%  Similarity=0.140  Sum_probs=54.7

Q ss_pred             CCEEEEEcccCChHHHHHHHH---hC---------CCCEEEEEeCChHHHHHHHHH--hhcCCCeEEEEcCCCCchh--h
Q 024665          144 GARVLYLGAASGTTVSHVSDI---VG---------PNGVVYAVEFSHRSGRDLVNM--AKKRTNVIPIIEDARHPAK--Y  207 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~---~~---------~~g~V~avD~s~~~~~~l~~~--a~~~~nV~~i~~D~~~~~~--~  207 (264)
                      ...|||+|||+|.++..++..   .+         .+.+|||||.|+.+...+...  +.....|++|++|+++...  -
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~  489 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAK  489 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccc
Confidence            458999999999997543222   22         234999999998664333333  3334579999999998752  0


Q ss_pred             cccCCCccEEEEcCC
Q 024665          208 RMLVGMVDVIFSDVA  222 (264)
Q Consensus       208 ~~~~~~fD~V~~d~p  222 (264)
                      ....+++|+|++...
T Consensus       490 ~~~~ekVDIIVSElm  504 (745)
T 3ua3_A          490 DRGFEQPDIIVSELL  504 (745)
T ss_dssp             HTTCCCCSEEEECCC
T ss_pred             cCCCCcccEEEEecc
Confidence            011579999999876

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=97.97  E-value=7.4e-06  Score=71.39  Aligned_cols=79  Identities=16%  Similarity=0.011  Sum_probs=54.0

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHh------CCC-----CEEEEEeCCh---HHHHHH----------HH-Hhh-------
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIV------GPN-----GVVYAVEFSH---RSGRDL----------VN-MAK-------  189 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~------~~~-----g~V~avD~s~---~~~~~l----------~~-~a~-------  189 (264)
                      ++..+|||+|+|+|..++.+++.+      .|.     .+|+++|..+   +.++.+          .+ ...       
T Consensus        59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~  138 (257)
T 2qy6_A           59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP  138 (257)
T ss_dssp             SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence            355799999999999999988765      564     4899999875   222211          11 111       


Q ss_pred             ------c---CCCeEEEEcCCCCchhhcccC----CCccEEEEcCC
Q 024665          190 ------K---RTNVIPIIEDARHPAKYRMLV----GMVDVIFSDVA  222 (264)
Q Consensus       190 ------~---~~nV~~i~~D~~~~~~~~~~~----~~fD~V~~d~p  222 (264)
                            .   ..+++++++|+.+..+.  +.    ..||+|++|+-
T Consensus       139 g~~r~~~~~~~~~l~l~~GDa~~~l~~--~~~~~~~~~D~iflD~f  182 (257)
T 2qy6_A          139 GCHRLLLDEGRVTLDLWFGDINELISQ--LDDSLNQKVDAWFLDGF  182 (257)
T ss_dssp             EEEEEEEC--CEEEEEEESCHHHHGGG--SCGGGTTCEEEEEECSS
T ss_pred             chhheeccCCceEEEEEECcHHHHHhh--cccccCCeEEEEEECCC
Confidence                  1   13788999999885432  22    27999999974

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=97.72  E-value=1.1e-05  Score=71.16  Aligned_cols=78  Identities=13%  Similarity=-0.034  Sum_probs=57.3

Q ss_pred             CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhh-cccCCCccEEEEcCC
Q 024665          144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY-RMLVGMVDVIFSDVA  222 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~-~~~~~~fD~V~~d~p  222 (264)
                      +..+||+.+|||.+++.+...   ..+++.||.++...+.+.++.....++++++.|+....+. ....++||+||+|||
T Consensus        92 ~~~~LDlfaGSGaLgiEaLS~---~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPP  168 (283)
T 2oo3_A           92 LNSTLSYYPGSPYFAINQLRS---QDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPS  168 (283)
T ss_dssp             SSSSCCEEECHHHHHHHHSCT---TSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCC
T ss_pred             CCCceeEeCCcHHHHHHHcCC---CCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCC
Confidence            456999999999999998763   4689999999877655444443335899999998664321 111247999999999


Q ss_pred             Cc
Q 024665          223 QP  224 (264)
Q Consensus       223 ~~  224 (264)
                      ..
T Consensus       169 Ye  170 (283)
T 2oo3_A          169 YE  170 (283)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.68  E-value=9.7e-05  Score=65.30  Aligned_cols=71  Identities=20%  Similarity=0.134  Sum_probs=46.4

Q ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc-CC-CeEEEEcCCCC
Q 024665          126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-RT-NVIPIIEDARH  203 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~-~~-nV~~i~~D~~~  203 (264)
                      ..++..++..+    -.+++.|||++||+|++++.++.+   ..+++++|+++.+++.+.+.... .. .-..+..|+++
T Consensus       222 ~~l~~~~i~~~----~~~~~~vlD~f~GsGt~~~~a~~~---g~~~~g~e~~~~~~~~a~~r~~~~~~~~~~~~~~~~~~  294 (297)
T 2zig_A          222 LELAERLVRMF----SFVGDVVLDPFAGTGTTLIAAARW---GRRALGVELVPRYAQLAKERFAREVPGFSLEVLDGATH  294 (297)
T ss_dssp             HHHHHHHHHHH----CCTTCEEEETTCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEECC---
T ss_pred             HHHHHHHHHHh----CCCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHHhccccchhhCCcccc
Confidence            45666665332    368999999999999999998875   24899999998876554444322 11 23344555443

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=97.68  E-value=6e-05  Score=69.08  Aligned_cols=78  Identities=21%  Similarity=0.214  Sum_probs=58.2

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh----------cCCCeEEEEcCCCCchhh-cccC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK----------KRTNVIPIIEDARHPAKY-RMLV  211 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~----------~~~nV~~i~~D~~~~~~~-~~~~  211 (264)
                      +..+||=+|-|.|.....+++.  +..+|+.||+++.+++-..+.-.          ..++++++++|+.++.+. ....
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh--~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~  282 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKL--KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG  282 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTT--CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCcHHHHHHHHhc--CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhcc
Confidence            4579999999999999999876  45799999999988655444321          113699999999876532 1123


Q ss_pred             CCccEEEEcCC
Q 024665          212 GMVDVIFSDVA  222 (264)
Q Consensus       212 ~~fD~V~~d~p  222 (264)
                      .+||+|++|.+
T Consensus       283 ~~yDvIIvDl~  293 (381)
T 3c6k_A          283 REFDYVINDLT  293 (381)
T ss_dssp             CCEEEEEEECC
T ss_pred             CceeEEEECCC
Confidence            58999999975

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.64  E-value=0.00012  Score=64.62  Aligned_cols=67  Identities=21%  Similarity=0.255  Sum_probs=48.9

Q ss_pred             CCCCCCEEEEEcc------cCChHHHHHHHHhCCC-CEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCC
Q 024665          140 WIKPGARVLYLGA------ASGTTVSHVSDIVGPN-GVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVG  212 (264)
Q Consensus       140 ~l~~g~~VLDlG~------G~G~~s~~la~~~~~~-g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~  212 (264)
                      .+..+++||||||      +||++  .+. .+.|. +.|+++|+.+-.        . ..+ .+|++|.....    ...
T Consensus       106 ~vp~gmrVLDLGA~s~kg~APGS~--VLr-~~~p~g~~VVavDL~~~~--------s-da~-~~IqGD~~~~~----~~~  168 (344)
T 3r24_A          106 AVPYNMRVIHFGAGSDKGVAPGTA--VLR-QWLPTGTLLVDSDLNDFV--------S-DAD-STLIGDCATVH----TAN  168 (344)
T ss_dssp             CCCTTCEEEEESCCCTTSBCHHHH--HHH-HHSCTTCEEEEEESSCCB--------C-SSS-EEEESCGGGEE----ESS
T ss_pred             eecCCCEEEeCCCCCCCCCCCcHH--HHH-HhCCCCcEEEEeeCcccc--------c-CCC-eEEEccccccc----cCC
Confidence            4678999999996      99994  333 44676 599999999621        1 123 45999976643    247


Q ss_pred             CccEEEEcCCC
Q 024665          213 MVDVIFSDVAQ  223 (264)
Q Consensus       213 ~fD~V~~d~p~  223 (264)
                      +||+|++|+++
T Consensus       169 k~DLVISDMAP  179 (344)
T 3r24_A          169 KWDLIISDMYD  179 (344)
T ss_dssp             CEEEEEECCCC
T ss_pred             CCCEEEecCCC
Confidence            89999999984

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=97.50  E-value=0.00017  Score=65.20  Aligned_cols=76  Identities=14%  Similarity=0.035  Sum_probs=53.4

Q ss_pred             CEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCCC
Q 024665          145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~  223 (264)
                      .+||||+||.|.+++.+...-.....|+++|+++.+.+....+.   ++..+++.|++++.........+|+|+.++|+
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~---~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPC   78 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF---PHTQLLAKTIEGITLEEFDRLSFDMILMSPPC   78 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC---TTSCEECSCGGGCCHHHHHHHCCSEEEECCC-
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhc---cccccccCCHHHccHhHcCcCCcCEEEEcCCC
Confidence            47999999999999999876211237999999987754433332   24567899998865321111269999999993

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=97.47  E-value=0.00031  Score=64.33  Aligned_cols=74  Identities=16%  Similarity=0.051  Sum_probs=54.7

Q ss_pred             CEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc-----cCCCccEEEE
Q 024665          145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-----LVGMVDVIFS  219 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~-----~~~~fD~V~~  219 (264)
                      .+||||+||.|.+++-+... + --.|.++|+++.+.+... .|  .++..+++.|+.++.....     ....+|+|+.
T Consensus         3 ~~vidLFsG~GGlslG~~~a-G-~~~v~avE~d~~a~~t~~-~N--~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~g   77 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARA-G-FDVKMAVEIDQHAINTHA-IN--FPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIG   77 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHH-T-CEEEEEECSCHHHHHHHH-HH--CTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEE
T ss_pred             CeEEEEccCcCHHHHHHHHC-C-CcEEEEEeCCHHHHHHHH-Hh--CCCCceEecChhhcCHHHHHhhcccCCCeeEEEe
Confidence            47999999999999999876 2 346889999987754332 22  2467889999988643211     1357999999


Q ss_pred             cCCC
Q 024665          220 DVAQ  223 (264)
Q Consensus       220 d~p~  223 (264)
                      ++|+
T Consensus        78 gpPC   81 (376)
T 3g7u_A           78 GPPC   81 (376)
T ss_dssp             CCCC
T ss_pred             cCCC
Confidence            9994

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=97.41  E-value=0.00094  Score=58.84  Aligned_cols=78  Identities=10%  Similarity=0.003  Sum_probs=56.8

Q ss_pred             CCEEEEEcccCChHHHHHHHHhC----CCCEEEEEeCCh-----------------------------HHHHHHHHHhhc
Q 024665          144 GARVLYLGAASGTTVSHVSDIVG----PNGVVYAVEFSH-----------------------------RSGRDLVNMAKK  190 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~----~~g~V~avD~s~-----------------------------~~~~~l~~~a~~  190 (264)
                      -..|||+||..|..++.||..+.    +..+|+++|..+                             +.++++++.+..
T Consensus       107 pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl  186 (282)
T 2wk1_A          107 PGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDL  186 (282)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTC
T ss_pred             CCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCC
Confidence            34899999999999999998764    367899999631                             113344444444


Q ss_pred             C-CCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665          191 R-TNVIPIIEDARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       191 ~-~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      . .+|+++.+|+.+..+. ...++||+|+.|.-
T Consensus       187 ~~~~I~li~Gda~etL~~-~~~~~~d~vfIDaD  218 (282)
T 2wk1_A          187 LDEQVRFLPGWFKDTLPT-APIDTLAVLRMDGD  218 (282)
T ss_dssp             CSTTEEEEESCHHHHSTT-CCCCCEEEEEECCC
T ss_pred             CcCceEEEEeCHHHHHhh-CCCCCEEEEEEcCC
Confidence            2 6899999999875432 22468999999986

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=97.35  E-value=0.00048  Score=61.92  Aligned_cols=70  Identities=14%  Similarity=0.062  Sum_probs=51.1

Q ss_pred             CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665          144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      ..+||||+||.|.+++.+...  .--.|+++|+++.+.+....+.. .  ..  +.|++++...  ....+|+|+.++|
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~a--G~~~v~~~e~d~~a~~t~~~N~~-~--~~--~~Di~~~~~~--~~~~~D~l~~gpP   80 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFG-E--KP--EGDITQVNEK--TIPDHDILCAGFP   80 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHS-C--CC--BSCGGGSCGG--GSCCCSEEEEECC
T ss_pred             CCcEEEECCCcCHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHcC-C--CC--cCCHHHcCHh--hCCCCCEEEECCC
Confidence            468999999999999998865  24479999999877644433332 2  11  7888876532  2346999999999

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.00  E-value=0.0013  Score=56.83  Aligned_cols=55  Identities=15%  Similarity=0.086  Sum_probs=41.1

Q ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHH
Q 024665          126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNM  187 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~  187 (264)
                      ..|+..++..    ...+++.|||.+||||++++.++.+   ..+++++|+++.+.+...+.
T Consensus       199 ~~l~~~~i~~----~~~~~~~vlD~f~GsGtt~~~a~~~---gr~~ig~e~~~~~~~~~~~r  253 (260)
T 1g60_A          199 RDLIERIIRA----SSNPNDLVLDCFMGSGTTAIVAKKL---GRNFIGCDMNAEYVNQANFV  253 (260)
T ss_dssp             HHHHHHHHHH----HCCTTCEEEESSCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHHHH----hCCCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHH
Confidence            4566666533    2478999999999999999998876   34899999998775444433

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=96.97  E-value=0.0018  Score=59.76  Aligned_cols=61  Identities=15%  Similarity=0.144  Sum_probs=46.2

Q ss_pred             CCCCCEEEEEcccCChHHHHHH-HHhCCCCEEEEEeCChHHHHHHHHHhhc-----C-CCeEEEEcCC
Q 024665          141 IKPGARVLYLGAASGTTVSHVS-DIVGPNGVVYAVEFSHRSGRDLVNMAKK-----R-TNVIPIIEDA  201 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la-~~~~~~g~V~avD~s~~~~~~l~~~a~~-----~-~nV~~i~~D~  201 (264)
                      +++++.|+|+||..|.+++.++ ....+.++|+|+|-++...+.+.++...     . .||++++.-+
T Consensus       224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al  291 (409)
T 2py6_A          224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGA  291 (409)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEE
T ss_pred             cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEE
Confidence            5799999999999999999998 4544458999999998876665554443     2 5676665443

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=96.69  E-value=0.0029  Score=56.77  Aligned_cols=76  Identities=7%  Similarity=-0.047  Sum_probs=52.3

Q ss_pred             CCEEEEEcccCChHHHHHHHHhCC-CCEE-EEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcC
Q 024665          144 GARVLYLGAASGTTVSHVSDIVGP-NGVV-YAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDV  221 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~~-~g~V-~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~  221 (264)
                      .-+||||+||.|.+++-+... +- .-.| .|+|+++.+.+.... |..  +. +++.|++++.........+|+|+..+
T Consensus        10 ~~~vidLFaG~GG~~~G~~~a-G~~~~~v~~a~e~d~~a~~ty~~-N~~--~~-~~~~DI~~~~~~~i~~~~~Dil~ggp   84 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERS-SININATFIPFDINEIANKIYSK-NFK--EE-VQVKNLDSISIKQIESLNCNTWFMSP   84 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHS-SCCCCEEEEEECCCHHHHHHHHH-HHC--CC-CBCCCTTTCCHHHHHHTCCCEEEECC
T ss_pred             CCEEEEECCChhHHHHHHHHc-CCCceEEEEEEECCHHHHHHHHH-HCC--CC-cccCChhhcCHHHhccCCCCEEEecC
Confidence            348999999999999988764 21 2357 799999877544333 322  22 67899988754221123699999999


Q ss_pred             CCc
Q 024665          222 AQP  224 (264)
Q Consensus       222 p~~  224 (264)
                      |+.
T Consensus        85 PCQ   87 (327)
T 3qv2_A           85 PCQ   87 (327)
T ss_dssp             CCT
T ss_pred             Ccc
Confidence            943

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=96.67  E-value=0.0052  Score=54.37  Aligned_cols=81  Identities=20%  Similarity=0.141  Sum_probs=56.0

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCE-EEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-CCCccEEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGV-VYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-VGMVDVIF  218 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~-V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-~~~fD~V~  218 (264)
                      .+...+||||+||.|.+++-+... +-... |+++|+++.+.+... .+  .++..+++.|++++...... ...+|+|+
T Consensus        13 ~~~~~~vidLFaG~GG~~~g~~~a-G~~~~~v~a~E~d~~a~~ty~-~N--~~~~~~~~~DI~~i~~~~i~~~~~~Dll~   88 (295)
T 2qrv_A           13 KRKPIRVLSLFDGIATGLLVLKDL-GIQVDRYIASEVCEDSITVGM-VR--HQGKIMYVGDVRSVTQKHIQEWGPFDLVI   88 (295)
T ss_dssp             CCCCEEEEEETCTTTHHHHHHHHT-TBCEEEEEEECCCHHHHHHHH-HH--TTTCEEEECCGGGCCHHHHHHTCCCSEEE
T ss_pred             cCCCCEEEEeCcCccHHHHHHHHC-CCccceEEEEECCHHHHHHHH-Hh--CCCCceeCCChHHccHHHhcccCCcCEEE
Confidence            345568999999999999988764 32222 799999987653332 22  23557889999886532111 14799999


Q ss_pred             EcCCCch
Q 024665          219 SDVAQPD  225 (264)
Q Consensus       219 ~d~p~~~  225 (264)
                      ..+|+.+
T Consensus        89 ggpPCQ~   95 (295)
T 2qrv_A           89 GGSPCND   95 (295)
T ss_dssp             ECCCCGG
T ss_pred             ecCCCcc
Confidence            9999543

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=96.66  E-value=0.0055  Score=56.22  Aligned_cols=79  Identities=14%  Similarity=0.017  Sum_probs=50.9

Q ss_pred             CCEEEEEcccCChHHHHHHHHh----------------CCCCEEEEEeCC-----------hHHHHHHHHHhhcCCCeEE
Q 024665          144 GARVLYLGAASGTTVSHVSDIV----------------GPNGVVYAVEFS-----------HRSGRDLVNMAKKRTNVIP  196 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~----------------~~~g~V~avD~s-----------~~~~~~l~~~a~~~~nV~~  196 (264)
                      ..+|+|+||++|..|+.+...+                .|.-+|+..|+.           +.+.+.+.+......+-.+
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f  132 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL  132 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence            4689999999999999887661                245688999976           2221111111111124567


Q ss_pred             EEcCCCCchhhcccCCCccEEEEcCC
Q 024665          197 IIEDARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       197 i~~D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      +.+....+....++.+++|+|+++.+
T Consensus       133 ~~gvpgSFy~rlfp~~S~d~v~Ss~a  158 (384)
T 2efj_A          133 IGAMPGSFYSRLFPEESMHFLHSCYC  158 (384)
T ss_dssp             EEECCSCTTSCCSCTTCEEEEEEESC
T ss_pred             EEecchhhhhccCCCCceEEEEecce
Confidence            77777665443345679999999988

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=96.57  E-value=0.0035  Score=56.37  Aligned_cols=73  Identities=14%  Similarity=0.067  Sum_probs=51.8

Q ss_pred             EEEEEcccCChHHHHHHHHhCC-CCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665          146 RVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       146 ~VLDlG~G~G~~s~~la~~~~~-~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      +||||+||.|.+++-+... +- .-.|.++|+++.+.+... .|.  ++..+++.|++++.........+|+|+..+|
T Consensus         5 ~~idLFaG~GG~~~G~~~a-G~~~~~v~a~e~d~~a~~ty~-~N~--~~~~~~~~DI~~~~~~~~~~~~~D~l~ggpP   78 (333)
T 4h0n_A            5 KILELYSGIGGMHCAWKES-GLDGEIVAAVDINTVANSVYK-HNF--PETNLLNRNIQQLTPQVIKKWNVDTILMSPP   78 (333)
T ss_dssp             EEEEETCTTTHHHHHHHHH-TCSEEEEEEECCCHHHHHHHH-HHC--TTSCEECCCGGGCCHHHHHHTTCCEEEECCC
T ss_pred             EEEEECcCccHHHHHHHHc-CCCceEEEEEeCCHHHHHHHH-HhC--CCCceeccccccCCHHHhccCCCCEEEecCC
Confidence            7999999999999998765 21 135899999987754332 221  3455788999886542111236999999999

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=96.56  E-value=0.0037  Score=55.48  Aligned_cols=70  Identities=13%  Similarity=0.068  Sum_probs=51.3

Q ss_pred             CEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665          145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      .+||||.||.|.+++-+-+. + --.|.|+|+++.+.+.. +.|.   .-+++++|++++...  ....+|+|+.-+|
T Consensus         1 mkvidLFsG~GG~~~G~~~a-G-~~~v~a~e~d~~a~~ty-~~N~---~~~~~~~DI~~i~~~--~~~~~D~l~ggpP   70 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKA-G-FRIICANEYDKSIWKTY-ESNH---SAKLIKGDISKISSD--EFPKCDGIIGGPP   70 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHT-T-CEEEEEEECCTTTHHHH-HHHC---CSEEEESCGGGCCGG--GSCCCSEEECCCC
T ss_pred             CeEEEeCcCccHHHHHHHHC-C-CEEEEEEeCCHHHHHHH-HHHC---CCCcccCChhhCCHh--hCCcccEEEecCC
Confidence            37999999999999988654 3 23688999998664333 2222   346789999887642  3357999999999

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=96.21  E-value=0.0052  Score=58.04  Aligned_cols=78  Identities=19%  Similarity=0.162  Sum_probs=54.0

Q ss_pred             CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhh--------------cc
Q 024665          144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY--------------RM  209 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~--------------~~  209 (264)
                      .-+||||+||.|.+++-+... + --.|+++|+++.+.+....+-...++..+++.|+.++...              ..
T Consensus        88 ~~~viDLFaG~GGlslG~~~a-G-~~~v~avE~d~~A~~ty~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~~  165 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESI-G-GQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDITLSHQEGVSDEAAAEHIRQ  165 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTT-T-EEEEEEECCCHHHHHHHHHHSCCCTTTCEEESCTHHHHCTTCTTSCHHHHHHHHHH
T ss_pred             cceEEEecCCccHHHHHHHHC-C-CEEEEEEeCCHHHHHHHHHhcccCCCcceeccchhhhhhccccccchhhHHhhhhh
Confidence            358999999999999988754 2 2358999999877544333222224567888999876421              01


Q ss_pred             cCCCccEEEEcCCC
Q 024665          210 LVGMVDVIFSDVAQ  223 (264)
Q Consensus       210 ~~~~fD~V~~d~p~  223 (264)
                      ....+|+|+..+|+
T Consensus       166 ~~~~~Dvl~gGpPC  179 (482)
T 3me5_A          166 HIPEHDVLLAGFPC  179 (482)
T ss_dssp             HSCCCSEEEEECCC
T ss_pred             cCCCCCEEEecCCC
Confidence            23579999999994

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=95.57  E-value=0.017  Score=52.76  Aligned_cols=79  Identities=13%  Similarity=0.150  Sum_probs=45.0

Q ss_pred             CCEEEEEcccCChHHHHHHHHh--------------CCCCEEEEEeCChHHHHHHHHHhhc-C-------------CCeE
Q 024665          144 GARVLYLGAASGTTVSHVSDIV--------------GPNGVVYAVEFSHRSGRDLVNMAKK-R-------------TNVI  195 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~--------------~~~g~V~avD~s~~~~~~l~~~a~~-~-------------~nV~  195 (264)
                      ..+|+|+||++|..|+.+...+              .|.-+|+-.|+....--.+...... .             .+-.
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            5789999999999999874332              1567888888763111011111100 0             0112


Q ss_pred             EEEcCCCCchhhcccCCCccEEEEcCC
Q 024665          196 PIIEDARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       196 ~i~~D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      ++.+....+....++.++||+|+++.+
T Consensus       133 f~~gvpgSFy~rlfP~~S~d~v~Ss~a  159 (374)
T 3b5i_A          133 FVAGVPGSFYRRLFPARTIDFFHSAFS  159 (374)
T ss_dssp             EEEEEESCTTSCCSCTTCEEEEEEESC
T ss_pred             EEEecChhhhcccCCCcceEEEEecce
Confidence            344443333222234579999999888

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=95.11  E-value=0.2  Score=36.34  Aligned_cols=73  Identities=18%  Similarity=0.149  Sum_probs=51.1

Q ss_pred             CCEEEEEcccCChHHHHHHHHhCCC--CEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcC
Q 024665          144 GARVLYLGAASGTTVSHVSDIVGPN--GVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDV  221 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~~~--g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~  221 (264)
                      ..+|+=+||  |.+...++..+...  .+|+.+|.++...+.+.     ...+.++..|..+..........+|+|+...
T Consensus         5 ~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~   77 (118)
T 3ic5_A            5 RWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN-----RMGVATKQVDAKDEAGLAKALGGFDAVISAA   77 (118)
T ss_dssp             CEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH-----TTTCEEEECCTTCHHHHHHHTTTCSEEEECS
T ss_pred             cCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH-----hCCCcEEEecCCCHHHHHHHHcCCCEEEECC
Confidence            468998988  88887777665333  47999999975432222     3467888999988654333446899999887


Q ss_pred             CC
Q 024665          222 AQ  223 (264)
Q Consensus       222 p~  223 (264)
                      |.
T Consensus        78 ~~   79 (118)
T 3ic5_A           78 PF   79 (118)
T ss_dssp             CG
T ss_pred             Cc
Confidence            64

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=94.58  E-value=0.045  Score=48.69  Aligned_cols=49  Identities=16%  Similarity=0.028  Sum_probs=37.5

Q ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHH
Q 024665          126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSG  181 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~  181 (264)
                      ..|+..++..    .-++++.|||..||||+++..+..+   .-+.+++|+++...
T Consensus       239 ~~l~~~~i~~----~~~~~~~VlDpF~GsGtt~~aa~~~---gr~~ig~e~~~~~~  287 (323)
T 1boo_A          239 AKLPEFFIRM----LTEPDDLVVDIFGGSNTTGLVAERE---SRKWISFEMKPEYV  287 (323)
T ss_dssp             THHHHHHHHH----HCCTTCEEEETTCTTCHHHHHHHHT---TCEEEEEESCHHHH
T ss_pred             HHHHHHHHHH----hCCCCCEEEECCCCCCHHHHHHHHc---CCCEEEEeCCHHHH
Confidence            4566655532    3578999999999999988887765   34899999998663

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=94.49  E-value=0.074  Score=47.31  Aligned_cols=50  Identities=16%  Similarity=0.118  Sum_probs=39.1

Q ss_pred             chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCCh---HHH
Q 024665          125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSH---RSG  181 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~---~~~  181 (264)
                      -..|+..++..    .-.+++.|||..||||++.+.+..+   .-+.+++|+++   ...
T Consensus       228 p~~l~~~~i~~----~~~~~~~vlDpF~GsGtt~~aa~~~---~r~~ig~e~~~~~~~~~  280 (319)
T 1eg2_A          228 PAAVIERLVRA----LSHPGSTVLDFFAGSGVTARVAIQE---GRNSICTDAAPVFKEYY  280 (319)
T ss_dssp             CHHHHHHHHHH----HSCTTCEEEETTCTTCHHHHHHHHH---TCEEEEEESSTHHHHHH
T ss_pred             CHHHHHHHHHH----hCCCCCEEEecCCCCCHHHHHHHHc---CCcEEEEECCccHHHHH
Confidence            35566666533    3578999999999999999988877   24899999998   654

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=93.95  E-value=0.33  Score=36.85  Aligned_cols=74  Identities=16%  Similarity=0.146  Sum_probs=50.7

Q ss_pred             CCEEEEEcccCChHHHHHHHHhCC-CCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-CCCccEEEEcC
Q 024665          144 GARVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-VGMVDVIFSDV  221 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~~-~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-~~~fD~V~~d~  221 (264)
                      ..+|+=+||  |.+...+++.+.. ..+|+.+|.+++..+.+.+     ..+.++.+|+++....... ...+|+|++-.
T Consensus         6 ~~~v~I~G~--G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~-----~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~   78 (141)
T 3llv_A            6 RYEYIVIGS--EAAGVGLVRELTAAGKKVLAVDKSKEKIELLED-----EGFDAVIADPTDESFYRSLDLEGVSAVLITG   78 (141)
T ss_dssp             CCSEEEECC--SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH-----TTCEEEECCTTCHHHHHHSCCTTCSEEEECC
T ss_pred             CCEEEEECC--CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH-----CCCcEEECCCCCHHHHHhCCcccCCEEEEec
Confidence            346888887  6688888776643 3479999999865433322     2578899999986543222 35799999887


Q ss_pred             CCc
Q 024665          222 AQP  224 (264)
Q Consensus       222 p~~  224 (264)
                      +..
T Consensus        79 ~~~   81 (141)
T 3llv_A           79 SDD   81 (141)
T ss_dssp             SCH
T ss_pred             CCH
Confidence            743

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=93.38  E-value=0.1  Score=48.08  Aligned_cols=41  Identities=17%  Similarity=0.094  Sum_probs=30.1

Q ss_pred             CEEEEEcccCChHHHHHHHHhCCCCE----EEEEeCChHHHHHHH
Q 024665          145 ARVLYLGAASGTTVSHVSDIVGPNGV----VYAVEFSHRSGRDLV  185 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~~~~g~----V~avD~s~~~~~~l~  185 (264)
                      -+||||+||.|..+..+-+.-.+-..    |.++|+++.+.+...
T Consensus        11 lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~   55 (403)
T 4dkj_A           11 IKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYV   55 (403)
T ss_dssp             EEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHH
T ss_pred             ceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHH
Confidence            47999999999999988765211124    899999987754433

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=93.35  E-value=0.51  Score=39.20  Aligned_cols=75  Identities=9%  Similarity=0.029  Sum_probs=52.2

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-CCCccEEEEc
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-VGMVDVIFSD  220 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-~~~fD~V~~d  220 (264)
                      ....+|+=+||  |.++..+++.+...+.|+.+|.++..++.    ..  .++.++.+|+++....... ...+|+|++-
T Consensus         7 ~~~~~viI~G~--G~~G~~la~~L~~~g~v~vid~~~~~~~~----~~--~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~   78 (234)
T 2aef_A            7 AKSRHVVICGW--SESTLECLRELRGSEVFVLAEDENVRKKV----LR--SGANFVHGDPTRVSDLEKANVRGARAVIVD   78 (234)
T ss_dssp             ---CEEEEESC--CHHHHHHHHHSTTSEEEEEESCGGGHHHH----HH--TTCEEEESCTTCHHHHHHTTCTTCSEEEEC
T ss_pred             CCCCEEEEECC--ChHHHHHHHHHHhCCeEEEEECCHHHHHH----Hh--cCCeEEEcCCCCHHHHHhcCcchhcEEEEc
Confidence            34567887776  79999999888655559999999754322    22  4689999999986543222 4689999987


Q ss_pred             CCCc
Q 024665          221 VAQP  224 (264)
Q Consensus       221 ~p~~  224 (264)
                      .+..
T Consensus        79 ~~~d   82 (234)
T 2aef_A           79 LESD   82 (234)
T ss_dssp             CSCH
T ss_pred             CCCc
Confidence            7644

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=93.20  E-value=0.31  Score=37.31  Aligned_cols=87  Identities=11%  Similarity=0.104  Sum_probs=56.0

Q ss_pred             CEEEEEcccCChHHHHHHHHhCC-CCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc-cCCCccEEEEcCC
Q 024665          145 ARVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-LVGMVDVIFSDVA  222 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~~~-~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~-~~~~fD~V~~d~p  222 (264)
                      .+|+=+||  |.++..+++.+.. ...|+.+|.+++.++.+.    . ..+.++.+|+++...... ....+|+|++-.+
T Consensus         8 ~~viIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~----~-~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~   80 (140)
T 3fwz_A            8 NHALLVGY--GRVGSLLGEKLLASDIPLVVIETSRTRVDELR----E-RGVRAVLGNAANEEIMQLAHLECAKWLILTIP   80 (140)
T ss_dssp             SCEEEECC--SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHH----H-TTCEEEESCTTSHHHHHHTTGGGCSEEEECCS
T ss_pred             CCEEEECc--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH----H-cCCCEEECCCCCHHHHHhcCcccCCEEEEECC
Confidence            46777776  7777777766642 347999999986543322    2 367889999988653322 1357999998887


Q ss_pred             CchHHH--HHHHHHhCCC
Q 024665          223 QPDQVC--FLCLILFQPI  238 (264)
Q Consensus       223 ~~~~~~--~~~~~~l~~~  238 (264)
                      ......  ......+.|.
T Consensus        81 ~~~~n~~~~~~a~~~~~~   98 (140)
T 3fwz_A           81 NGYEAGEIVASARAKNPD   98 (140)
T ss_dssp             CHHHHHHHHHHHHHHCSS
T ss_pred             ChHHHHHHHHHHHHHCCC
Confidence            655433  2334444454

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=92.60  E-value=0.69  Score=41.39  Aligned_cols=72  Identities=17%  Similarity=0.175  Sum_probs=54.2

Q ss_pred             CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCCC
Q 024665          144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~  223 (264)
                      .++||=+||  |..+..+++.+.....|+.+|++.+.++    .+  ...+..+..|+.+..........+|+|++-.|.
T Consensus        16 ~mkilvlGa--G~vG~~~~~~L~~~~~v~~~~~~~~~~~----~~--~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~   87 (365)
T 3abi_A           16 HMKVLILGA--GNIGRAIAWDLKDEFDVYIGDVNNENLE----KV--KEFATPLKVDASNFDKLVEVMKEFELVIGALPG   87 (365)
T ss_dssp             CCEEEEECC--SHHHHHHHHHHTTTSEEEEEESCHHHHH----HH--TTTSEEEECCTTCHHHHHHHHTTCSEEEECCCG
T ss_pred             ccEEEEECC--CHHHHHHHHHHhcCCCeEEEEcCHHHHH----HH--hccCCcEEEecCCHHHHHHHHhCCCEEEEecCC
Confidence            468999998  8888888888877789999999975432    22  345678889998876544455689999987663

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=92.55  E-value=0.81  Score=34.09  Aligned_cols=75  Identities=7%  Similarity=0.104  Sum_probs=48.5

Q ss_pred             CEEEEEcccCChHHHHHHHHhCC-CCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhc-ccCCCccEEEEcCC
Q 024665          145 ARVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR-MLVGMVDVIFSDVA  222 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~~~-~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~-~~~~~fD~V~~d~p  222 (264)
                      ++|+=+||  |.++..++..+.. ..+|+.+|.++...+.+.+    ..++.++..|..+..... .....+|+|++-.+
T Consensus         5 m~i~IiG~--G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~----~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~   78 (140)
T 1lss_A            5 MYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASA----EIDALVINGDCTKIKTLEDAGIEDADMYIAVTG   78 (140)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----HCSSEEEESCTTSHHHHHHTTTTTCSEEEECCS
T ss_pred             CEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH----hcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeC
Confidence            57777765  8888888766532 3479999999754333221    125677888887654321 12357999998877


Q ss_pred             Cch
Q 024665          223 QPD  225 (264)
Q Consensus       223 ~~~  225 (264)
                      .+.
T Consensus        79 ~~~   81 (140)
T 1lss_A           79 KEE   81 (140)
T ss_dssp             CHH
T ss_pred             Cch
Confidence            543

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=91.94  E-value=0.98  Score=40.76  Aligned_cols=80  Identities=19%  Similarity=0.187  Sum_probs=49.1

Q ss_pred             ccCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCc-hh-hcc-cCC-
Q 024665          138 NIWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHP-AK-YRM-LVG-  212 (264)
Q Consensus       138 ~~~l~~g~~VLDlG~G~-G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~-~~-~~~-~~~-  212 (264)
                      ...++++++||-+|||+ |.+++.+|...+ ..+|+++|.+++..    +.++.. ..+++..+-.++ .. ... ..+ 
T Consensus       180 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~----~~a~~l-Ga~~i~~~~~~~~~~~~~~~~~g~  253 (398)
T 2dph_A          180 SAGVKPGSHVYIAGAGPVGRCAAAGARLLG-AACVIVGDQNPERL----KLLSDA-GFETIDLRNSAPLRDQIDQILGKP  253 (398)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEEESCHHHH----HHHHTT-TCEEEETTSSSCHHHHHHHHHSSS
T ss_pred             HcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHH----HHHHHc-CCcEEcCCCcchHHHHHHHHhCCC
Confidence            34689999999999876 778888888765 34899999997442    333322 234443322222 11 101 112 


Q ss_pred             CccEEEEcCCC
Q 024665          213 MVDVIFSDVAQ  223 (264)
Q Consensus       213 ~fD~V~~d~p~  223 (264)
                      .||+||-....
T Consensus       254 g~Dvvid~~g~  264 (398)
T 2dph_A          254 EVDCGVDAVGF  264 (398)
T ss_dssp             CEEEEEECSCT
T ss_pred             CCCEEEECCCC
Confidence            69999866553

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=91.73  E-value=1.2  Score=37.72  Aligned_cols=79  Identities=13%  Similarity=0.132  Sum_probs=51.2

Q ss_pred             CCCEEEEEcccCChHHHHHHHH-hCCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhccc-------CCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDI-VGPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRML-------VGM  213 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~-~~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~-------~~~  213 (264)
                      .+.+||=.|++.|. ..++++. .....+|+.++.++..++++.+.... ..++.++..|+++.......       .+.
T Consensus        10 ~~k~vlVTGas~gI-G~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   88 (264)
T 3ucx_A           10 TDKVVVISGVGPAL-GTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAYGR   88 (264)
T ss_dssp             TTCEEEEESCCTTH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred             CCcEEEEECCCcHH-HHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            56789988887765 3333322 22345899999997655554443322 34899999999986532111       247


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      +|+++.+..
T Consensus        89 id~lv~nAg   97 (264)
T 3ucx_A           89 VDVVINNAF   97 (264)
T ss_dssp             CSEEEECCC
T ss_pred             CcEEEECCC
Confidence            899998873

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=91.68  E-value=0.53  Score=36.51  Aligned_cols=79  Identities=11%  Similarity=0.184  Sum_probs=49.7

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCC-CCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-CCCccEEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-VGMVDVIF  218 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~-~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-~~~fD~V~  218 (264)
                      ..++.+|+=+||  |.++..++..+.. ...|+.+|.++..    .+.......+.++..|..+....... ...+|+|+
T Consensus        16 ~~~~~~v~IiG~--G~iG~~la~~L~~~g~~V~vid~~~~~----~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi   89 (155)
T 2g1u_A           16 KQKSKYIVIFGC--GRLGSLIANLASSSGHSVVVVDKNEYA----FHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVF   89 (155)
T ss_dssp             -CCCCEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCGGG----GGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEE
T ss_pred             ccCCCcEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHH----HHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEE
Confidence            356789998876  7777777766532 2489999999643    12222123566788887764432111 34699999


Q ss_pred             EcCCCch
Q 024665          219 SDVAQPD  225 (264)
Q Consensus       219 ~d~p~~~  225 (264)
                      .-.+.+.
T Consensus        90 ~~~~~~~   96 (155)
T 2g1u_A           90 AFTNDDS   96 (155)
T ss_dssp             ECSSCHH
T ss_pred             EEeCCcH
Confidence            8877544

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=91.54  E-value=2.1  Score=35.05  Aligned_cols=78  Identities=12%  Similarity=0.047  Sum_probs=49.1

Q ss_pred             CCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHh--hcCCCeEEEEcCCCCchhhcccC-------CC
Q 024665          144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMA--KKRTNVIPIIEDARHPAKYRMLV-------GM  213 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a--~~~~nV~~i~~D~~~~~~~~~~~-------~~  213 (264)
                      +.+||=.|+. +.+..++++.+- ...+|+.++.++...+++.+..  ....++.++..|+++........       +.
T Consensus         2 ~k~vlITGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   80 (235)
T 3l77_A            2 MKVAVITGAS-RGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFGD   80 (235)
T ss_dssp             CCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHHSS
T ss_pred             CCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhcCC
Confidence            3567777765 455555554442 3458999999965544443332  22358999999999875432222       36


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      +|+++.++.
T Consensus        81 id~li~~Ag   89 (235)
T 3l77_A           81 VDVVVANAG   89 (235)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCc
Confidence            899998865

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=91.38  E-value=1.1  Score=37.23  Aligned_cols=79  Identities=10%  Similarity=0.192  Sum_probs=51.1

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhccc-------CCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRML-------VGM  213 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~-------~~~  213 (264)
                      .+.+||=.|+.. .+..++++.+ ....+|+.++.++...+++.+.... ..++.++..|+++.......       .+.
T Consensus         8 ~~k~vlITGas~-giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   86 (253)
T 3qiv_A            8 ENKVGIVTGSGG-GIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEFGG   86 (253)
T ss_dssp             TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCC-hHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            467888888765 4455544443 2345899999997655554443332 34789999999986532111       137


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      +|+|+.++.
T Consensus        87 id~li~~Ag   95 (253)
T 3qiv_A           87 IDYLVNNAA   95 (253)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            899999875

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=91.26  E-value=1.7  Score=37.61  Aligned_cols=79  Identities=22%  Similarity=0.248  Sum_probs=51.7

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhccc-------CCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRML-------VGM  213 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~-------~~~  213 (264)
                      .+.+||=.|+.+|. ...+++.+ ....+|+.++.++..++++.+.... ..++.++..|+++.......       .+.
T Consensus        30 ~gk~vlVTGas~gI-G~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  108 (301)
T 3tjr_A           30 DGRAAVVTGGASGI-GLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLLGG  108 (301)
T ss_dssp             TTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhCCC
Confidence            56788888887654 44444333 2345899999997655554443332 34899999999986532111       137


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      +|+|+.++.
T Consensus       109 id~lvnnAg  117 (301)
T 3tjr_A          109 VDVVFSNAG  117 (301)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            899998866

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=91.11  E-value=0.44  Score=47.22  Aligned_cols=56  Identities=18%  Similarity=0.108  Sum_probs=36.8

Q ss_pred             CEEEEEcccCChHHHHHHHHhC---CC-CEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCC
Q 024665          145 ARVLYLGAASGTTVSHVSDIVG---PN-GVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARH  203 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~~---~~-g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~  203 (264)
                      .+||||.||.|.+++-+.+...   .. -.|.|+|+++.+.+-... |  .++..+++.|+.+
T Consensus       213 ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~-N--hp~~~~~~~di~~  272 (784)
T 4ft4_B          213 ATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKY-N--HPQTEVRNEKADE  272 (784)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHH-H--CTTSEEEESCHHH
T ss_pred             CeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHH-H--CCCCceecCcHHH
Confidence            4799999999999988865421   00 168999999877544322 2  2345666666543

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=90.99  E-value=0.96  Score=35.90  Aligned_cols=75  Identities=19%  Similarity=0.277  Sum_probs=49.2

Q ss_pred             CCEEEEEcccCChHHHHHHHHhCC--CCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc--CCCccEEEE
Q 024665          144 GARVLYLGAASGTTVSHVSDIVGP--NGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML--VGMVDVIFS  219 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~~--~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~--~~~fD~V~~  219 (264)
                      +++|+=+||  |.+...+++.+..  ...|+++|.++...+.+.    . ..+.++.+|..+.......  ...+|+|++
T Consensus        39 ~~~v~IiG~--G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~----~-~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~  111 (183)
T 3c85_A           39 HAQVLILGM--GRIGTGAYDELRARYGKISLGIEIREEAAQQHR----S-EGRNVISGDATDPDFWERILDTGHVKLVLL  111 (183)
T ss_dssp             TCSEEEECC--SHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHH----H-TTCCEEECCTTCHHHHHTBCSCCCCCEEEE
T ss_pred             CCcEEEECC--CHHHHHHHHHHHhccCCeEEEEECCHHHHHHHH----H-CCCCEEEcCCCCHHHHHhccCCCCCCEEEE
Confidence            567887765  7787777766532  347999999975543322    1 2466788898875432222  457999998


Q ss_pred             cCCCch
Q 024665          220 DVAQPD  225 (264)
Q Consensus       220 d~p~~~  225 (264)
                      -.+.+.
T Consensus       112 ~~~~~~  117 (183)
T 3c85_A          112 AMPHHQ  117 (183)
T ss_dssp             CCSSHH
T ss_pred             eCCChH
Confidence            777543

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=90.88  E-value=1  Score=41.07  Aligned_cols=39  Identities=18%  Similarity=0.213  Sum_probs=30.6

Q ss_pred             CEEEEEcccCChHHHHHHHHhC------CCCEEEEEeCChHHHHH
Q 024665          145 ARVLYLGAASGTTVSHVSDIVG------PNGVVYAVEFSHRSGRD  183 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~~------~~g~V~avD~s~~~~~~  183 (264)
                      -.|+|+|+|+|++...+.+.+.      ...+++.||+|+...+.
T Consensus        82 ~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~  126 (387)
T 1zkd_A           82 LRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQK  126 (387)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHH
T ss_pred             cEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHH
Confidence            4699999999999988876542      23489999999877443

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=90.82  E-value=0.43  Score=39.29  Aligned_cols=79  Identities=16%  Similarity=0.159  Sum_probs=51.9

Q ss_pred             EEEEEcccCChHHHHHHHHhCC-CCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc-cCCCccEEEEcCCC
Q 024665          146 RVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-LVGMVDVIFSDVAQ  223 (264)
Q Consensus       146 ~VLDlG~G~G~~s~~la~~~~~-~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~-~~~~fD~V~~d~p~  223 (264)
                      +|+=+|  .|.++..+++.+.. .-.|+.+|.+++.++++.+    ..++.++.+|+++...... ....+|+|++-.+.
T Consensus         2 ~iiIiG--~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~----~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~   75 (218)
T 3l4b_C            2 KVIIIG--GETTAYYLARSMLSRKYGVVIINKDRELCEEFAK----KLKATIIHGDGSHKEILRDAEVSKNDVVVILTPR   75 (218)
T ss_dssp             CEEEEC--CHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----HSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSC
T ss_pred             EEEEEC--CCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH----HcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCC
Confidence            355555  48888888877642 3479999999865433222    1357899999998654322 24689999988776


Q ss_pred             chHHHHH
Q 024665          224 PDQVCFL  230 (264)
Q Consensus       224 ~~~~~~~  230 (264)
                      .......
T Consensus        76 d~~n~~~   82 (218)
T 3l4b_C           76 DEVNLFI   82 (218)
T ss_dssp             HHHHHHH
T ss_pred             cHHHHHH
Confidence            5444333

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=90.69  E-value=1.6  Score=38.32  Aligned_cols=43  Identities=21%  Similarity=0.283  Sum_probs=34.4

Q ss_pred             ccccCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCEEEEEeCChHH
Q 024665          136 VDNIWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRS  180 (264)
Q Consensus       136 l~~~~l~~g~~VLDlG~G~-G~~s~~la~~~~~~g~V~avD~s~~~  180 (264)
                      +....++++++||-.|||+ |.+++.+|...+  .+|+++|.+++-
T Consensus       159 l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~  202 (340)
T 3s2e_A          159 LKVTDTRPGQWVVISGIGGLGHVAVQYARAMG--LRVAAVDIDDAK  202 (340)
T ss_dssp             HHTTTCCTTSEEEEECCSTTHHHHHHHHHHTT--CEEEEEESCHHH
T ss_pred             HHHcCCCCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCHHH
Confidence            3444689999999999875 778888888864  489999999754

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=90.52  E-value=0.54  Score=48.08  Aligned_cols=75  Identities=16%  Similarity=0.216  Sum_probs=50.1

Q ss_pred             CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhh-----------ccc--
Q 024665          144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY-----------RML--  210 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~-----------~~~--  210 (264)
                      --++|||.||.|.+++-|... +-.-.|.|+|+++.+.+.. +.|  .++..+++.|+.++...           ..+  
T Consensus       540 ~l~~iDLFaG~GGlslGl~~A-G~~~vv~avEid~~A~~ty-~~N--~p~~~~~~~DI~~l~~~~~~~di~~~~~~~lp~  615 (1002)
T 3swr_A          540 KLRTLDVFSGCGGLSEGFHQA-GISDTLWAIEMWDPAAQAF-RLN--NPGSTVFTEDCNILLKLVMAGETTNSRGQRLPQ  615 (1002)
T ss_dssp             CEEEEEESCTTSHHHHHHHHH-TSEEEEEEECSSHHHHHHH-HHH--CTTSEEECSCHHHHHHHHHHTCSBCTTCCBCCC
T ss_pred             CCeEEEeccCccHHHHHHHHC-CCCceEEEEECCHHHHHHH-HHh--CCCCccccccHHHHhhhccchhhhhhhhhhccc
Confidence            347999999999999988765 2112588999998775433 222  34667777776443100           011  


Q ss_pred             CCCccEEEEcCC
Q 024665          211 VGMVDVIFSDVA  222 (264)
Q Consensus       211 ~~~fD~V~~d~p  222 (264)
                      ...+|+|+.-+|
T Consensus       616 ~~~vDll~GGpP  627 (1002)
T 3swr_A          616 KGDVEMLCGGPP  627 (1002)
T ss_dssp             TTTCSEEEECCC
T ss_pred             CCCeeEEEEcCC
Confidence            236999999999

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=90.35  E-value=0.75  Score=40.49  Aligned_cols=74  Identities=11%  Similarity=0.079  Sum_probs=52.2

Q ss_pred             CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-CCCccEEEEcCC
Q 024665          144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-VGMVDVIFSDVA  222 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-~~~fD~V~~d~p  222 (264)
                      ..+|+=+|+  |..+..+++.+...+.|+.+|.+++..+ +.     ..++.++++|+++....... ...+|.|++-.+
T Consensus       115 ~~~viI~G~--G~~g~~l~~~L~~~g~v~vid~~~~~~~-~~-----~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~  186 (336)
T 1lnq_A          115 SRHVVICGW--SESTLECLRELRGSEVFVLAEDENVRKK-VL-----RSGANFVHGDPTRVSDLEKANVRGARAVIVDLE  186 (336)
T ss_dssp             -CEEEEESC--CHHHHHHHTTGGGSCEEEEESCGGGHHH-HH-----HTTCEEEESCTTSHHHHHHTCSTTEEEEEECCS
T ss_pred             cCCEEEECC--cHHHHHHHHHHHhCCcEEEEeCChhhhh-HH-----hCCcEEEEeCCCCHHHHHhcChhhccEEEEcCC
Confidence            346776665  8899999888765555999999975543 21     14689999999987644322 468999998776


Q ss_pred             Cch
Q 024665          223 QPD  225 (264)
Q Consensus       223 ~~~  225 (264)
                      ...
T Consensus       187 ~d~  189 (336)
T 1lnq_A          187 SDS  189 (336)
T ss_dssp             SHH
T ss_pred             ccH
Confidence            543

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=90.32  E-value=0.081  Score=47.97  Aligned_cols=78  Identities=12%  Similarity=0.023  Sum_probs=47.0

Q ss_pred             CEEEEEcccCChHHHHHHHH---------------hCCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchh
Q 024665          145 ARVLYLGAASGTTVSHVSDI---------------VGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAK  206 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~---------------~~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~  206 (264)
                      -+|+|+||++|..|+.+...               -.|.-+|+..|+.......+.+....   ..+..++.+....+..
T Consensus        53 ~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy~  132 (359)
T 1m6e_X           53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG  132 (359)
T ss_dssp             ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred             eEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhhh
Confidence            57999999999877654433               23567899999874221111111110   0133566666555433


Q ss_pred             hcccCCCccEEEEcCC
Q 024665          207 YRMLVGMVDVIFSDVA  222 (264)
Q Consensus       207 ~~~~~~~fD~V~~d~p  222 (264)
                      .-++.+++|+|+++.+
T Consensus       133 rlfp~~S~d~v~Ss~a  148 (359)
T 1m6e_X          133 RLFPRNTLHFIHSSYS  148 (359)
T ss_dssp             CCSCTTCBSCEEEESC
T ss_pred             ccCCCCceEEEEehhh
Confidence            2244579999999887

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=90.15  E-value=2  Score=33.00  Aligned_cols=77  Identities=9%  Similarity=-0.003  Sum_probs=49.8

Q ss_pred             CEEEEEcccCChHHHHHHHHhCC-CCEEEEEeCC-hHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc-cCCCccEEEEcC
Q 024665          145 ARVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFS-HRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-LVGMVDVIFSDV  221 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~~~-~g~V~avD~s-~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~-~~~~fD~V~~d~  221 (264)
                      .+|+=+|  .|.++..+++.+.. ...|+.+|.+ ++..+.+.+.  ....+.++.+|+++...... ....+|+|++-.
T Consensus         4 ~~vlI~G--~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~--~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~   79 (153)
T 1id1_A            4 DHFIVCG--HSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQR--LGDNADVIPGDSNDSSVLKKAGIDRCRAILALS   79 (153)
T ss_dssp             SCEEEEC--CSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHH--HCTTCEEEESCTTSHHHHHHHTTTTCSEEEECS
T ss_pred             CcEEEEC--CCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHh--hcCCCeEEEcCCCCHHHHHHcChhhCCEEEEec
Confidence            4566555  48888888876643 3479999997 3332222221  22368899999988654322 246899999877


Q ss_pred             CCch
Q 024665          222 AQPD  225 (264)
Q Consensus       222 p~~~  225 (264)
                      +...
T Consensus        80 ~~d~   83 (153)
T 1id1_A           80 DNDA   83 (153)
T ss_dssp             SCHH
T ss_pred             CChH
Confidence            7443

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=90.14  E-value=3.2  Score=35.03  Aligned_cols=79  Identities=15%  Similarity=0.221  Sum_probs=50.2

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhccc-------C-C
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRML-------V-G  212 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~~-------~-~  212 (264)
                      .+.+||=.|+. +.+..++++.+ ....+|+.++.++..++++.+... ...++.++..|+.+.......       . +
T Consensus        20 ~~k~vlVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g   98 (273)
T 1ae1_A           20 KGTTALVTGGS-KGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDG   98 (273)
T ss_dssp             TTCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTS
T ss_pred             CCCEEEEECCc-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            46788888875 45555554443 234589999999655444433322 234799999999986532111       1 6


Q ss_pred             CccEEEEcCC
Q 024665          213 MVDVIFSDVA  222 (264)
Q Consensus       213 ~fD~V~~d~p  222 (264)
                      .+|+++.+..
T Consensus        99 ~id~lv~nAg  108 (273)
T 1ae1_A           99 KLNILVNNAG  108 (273)
T ss_dssp             CCCEEEECCC
T ss_pred             CCcEEEECCC
Confidence            7899998865

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=90.07  E-value=2.7  Score=35.19  Aligned_cols=79  Identities=18%  Similarity=0.208  Sum_probs=50.0

Q ss_pred             CCCEEEEEcc-cCChHHHHHHH-HhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhccc-------C
Q 024665          143 PGARVLYLGA-ASGTTVSHVSD-IVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRML-------V  211 (264)
Q Consensus       143 ~g~~VLDlG~-G~G~~s~~la~-~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~-------~  211 (264)
                      .+.+||=.|+ |+|. ..++++ +.....+|+.++.++...+++.+.....  .+++++..|+.+.......       .
T Consensus        21 ~~k~vlITGasg~GI-G~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   99 (266)
T 3o38_A           21 KGKVVLVTAAAGTGI-GSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEKA   99 (266)
T ss_dssp             TTCEEEESSCSSSSH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCch-HHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHHh
Confidence            4678888887 4555 333322 2223468999999966554544443322  3899999999986532111       1


Q ss_pred             CCccEEEEcCC
Q 024665          212 GMVDVIFSDVA  222 (264)
Q Consensus       212 ~~fD~V~~d~p  222 (264)
                      +.+|+|+.++.
T Consensus       100 g~id~li~~Ag  110 (266)
T 3o38_A          100 GRLDVLVNNAG  110 (266)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCcEEEECCC
Confidence            46899998876

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=89.89  E-value=0.94  Score=38.07  Aligned_cols=79  Identities=16%  Similarity=0.145  Sum_probs=49.8

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhcccC------CCc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRMLV------GMV  214 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~~~------~~f  214 (264)
                      .+.+||=.|+++|. ...+++.+ ....+|+.++.++..++++.+... ...++.++..|+++........      +.+
T Consensus         6 ~~k~vlVTGas~GI-G~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~g~i   84 (252)
T 3h7a_A            6 RNATVAVIGAGDYI-GAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAHAPL   84 (252)
T ss_dssp             CSCEEEEECCSSHH-HHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHSCE
T ss_pred             CCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhhCCc
Confidence            45678888877654 44444333 234589999998654444443332 2347999999999865321111      478


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+++.+..
T Consensus        85 d~lv~nAg   92 (252)
T 3h7a_A           85 EVTIFNVG   92 (252)
T ss_dssp             EEEEECCC
T ss_pred             eEEEECCC
Confidence            99998866

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=89.68  E-value=3.1  Score=34.85  Aligned_cols=77  Identities=13%  Similarity=0.168  Sum_probs=50.0

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-------CCCc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGMV  214 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-------~~~f  214 (264)
                      .+.+||=.|++. .+..++++.+ ....+|+.+|.++..++++.+..  ..++.++..|+++.......       .+.+
T Consensus         7 ~~k~vlVTGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   83 (259)
T 4e6p_A            7 EGKSALITGSAR-GIGRAFAEAYVREGATVAIADIDIERARQAAAEI--GPAAYAVQMDVTRQDSIDAAIAATVEHAGGL   83 (259)
T ss_dssp             TTCEEEEETCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHHHHSSSC
T ss_pred             CCCEEEEECCCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--CCCceEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence            467788788654 4555554433 23458999999976544444332  35789999999986532111       2479


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+|+.++.
T Consensus        84 d~lv~~Ag   91 (259)
T 4e6p_A           84 DILVNNAA   91 (259)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99998876

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=89.68  E-value=1.7  Score=35.87  Aligned_cols=79  Identities=10%  Similarity=0.095  Sum_probs=49.8

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-------CCCc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGMV  214 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-------~~~f  214 (264)
                      .+.+||=.|+ +|.+..++++.+- ...+|+.++.++...+++.+......+++++..|+.+.......       .+.+
T Consensus         5 ~~k~vlVtGa-sggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   83 (251)
T 1zk4_A            5 DGKVAIITGG-TLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPV   83 (251)
T ss_dssp             TTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred             CCcEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhccCceEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            3566776665 5566666655442 34589999999755444433332225799999999986532111       1368


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+|+.+..
T Consensus        84 d~li~~Ag   91 (251)
T 1zk4_A           84 STLVNNAG   91 (251)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99998865

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=89.55  E-value=1.7  Score=37.15  Aligned_cols=79  Identities=19%  Similarity=0.260  Sum_probs=49.8

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhccc-------CCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRML-------VGM  213 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~~-------~~~  213 (264)
                      .+.+||=.|++.|. ..++++.+ ....+|+.++.++..++++.+... ...++.++..|+++.......       .+.
T Consensus        31 ~gk~~lVTGas~GI-G~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~  109 (276)
T 3r1i_A           31 SGKRALITGASTGI-GKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGELGG  109 (276)
T ss_dssp             TTCEEEEESTTSHH-HHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            46788888876554 44444333 234589999998654444433332 234789999999986532111       137


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      +|+++.++.
T Consensus       110 iD~lvnnAg  118 (276)
T 3r1i_A          110 IDIAVCNAG  118 (276)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            899998876

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=89.47  E-value=3  Score=34.90  Aligned_cols=79  Identities=15%  Similarity=0.227  Sum_probs=50.3

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-------CCCc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGMV  214 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-------~~~f  214 (264)
                      .+.+||=.|+ +|.+..++++.+- ...+|+.++.++...+++.+......++.++..|+.+.......       .+.+
T Consensus        15 ~~k~vlITGa-sggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   93 (278)
T 2bgk_A           15 QDKVAIITGG-AGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKL   93 (278)
T ss_dssp             TTCEEEEEST-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             cCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            4568887776 4566666655432 34589999998655444433332223799999999986532111       1368


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+|+.+..
T Consensus        94 d~li~~Ag  101 (278)
T 2bgk_A           94 DIMFGNVG  101 (278)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCc
Confidence            99998765

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=89.47  E-value=3.4  Score=34.52  Aligned_cols=79  Identities=14%  Similarity=0.202  Sum_probs=49.8

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhccc-------C-C
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRML-------V-G  212 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~~-------~-~  212 (264)
                      .+.+||=.|+. |.+..++++.+ ....+|+.++.++...+++.+... ...++.++..|+.+.......       . +
T Consensus         8 ~~k~vlVTGas-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g   86 (260)
T 2ae2_A            8 EGCTALVTGGS-RGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHG   86 (260)
T ss_dssp             TTCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTT
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            45678877765 55555555443 234589999999655444333322 234788999999986532111       1 5


Q ss_pred             CccEEEEcCC
Q 024665          213 MVDVIFSDVA  222 (264)
Q Consensus       213 ~fD~V~~d~p  222 (264)
                      .+|+|+.+..
T Consensus        87 ~id~lv~~Ag   96 (260)
T 2ae2_A           87 KLNILVNNAG   96 (260)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7999998865

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=89.44  E-value=1.6  Score=36.50  Aligned_cols=79  Identities=16%  Similarity=0.211  Sum_probs=50.3

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCC----CEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCC------
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPN----GVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVG------  212 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~----g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~------  212 (264)
                      .+.+||=.|+ +|.+..++++.+-..    .+|+.++.++...+.+.+......++.++..|+.+.........      
T Consensus        20 ~~k~vlITGa-sggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   98 (267)
T 1sny_A           20 HMNSILITGC-NRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVT   98 (267)
T ss_dssp             CCSEEEESCC-SSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHH
T ss_pred             CCCEEEEECC-CCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHHHHhhccCCceEEEEecCCChHHHHHHHHHHHHhc
Confidence            4567777775 577777777655333    58999998853222223333334589999999998653222211      


Q ss_pred             ---CccEEEEcCC
Q 024665          213 ---MVDVIFSDVA  222 (264)
Q Consensus       213 ---~fD~V~~d~p  222 (264)
                         .+|+||.++.
T Consensus        99 g~~~id~li~~Ag  111 (267)
T 1sny_A           99 KDQGLNVLFNNAG  111 (267)
T ss_dssp             GGGCCSEEEECCC
T ss_pred             CCCCccEEEECCC
Confidence               6899998865

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=89.38  E-value=3.4  Score=34.57  Aligned_cols=79  Identities=13%  Similarity=0.175  Sum_probs=49.1

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhh-c-CCCeEEEEcCCCCchhhccc-------CC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAK-K-RTNVIPIIEDARHPAKYRML-------VG  212 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~-~-~~nV~~i~~D~~~~~~~~~~-------~~  212 (264)
                      .+.+||=.|+. |.+..++++.+- ...+|+.++.++..++++.+... . ..++.++..|+++.......       .+
T Consensus         6 ~~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   84 (263)
T 3ai3_A            6 SGKVAVITGSS-SGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRSSFG   84 (263)
T ss_dssp             TTCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            35678877765 455555554432 34589999999654434333221 1 34789999999986532111       13


Q ss_pred             CccEEEEcCC
Q 024665          213 MVDVIFSDVA  222 (264)
Q Consensus       213 ~fD~V~~d~p  222 (264)
                      .+|+|+.+..
T Consensus        85 ~id~lv~~Ag   94 (263)
T 3ai3_A           85 GADILVNNAG   94 (263)
T ss_dssp             SCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7899998865

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=89.27  E-value=2.1  Score=36.50  Aligned_cols=77  Identities=13%  Similarity=0.190  Sum_probs=49.8

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-------CCCc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGMV  214 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-------~~~f  214 (264)
                      .+.+||=.|++.| +..++++.+ ....+|+.++.++..++++.+.  ...++.++..|+++.......       .+.+
T Consensus        26 ~~k~vlVTGas~G-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  102 (277)
T 4dqx_A           26 NQRVCIVTGGGSG-IGRATAELFAKNGAYVVVADVNEDAAVRVANE--IGSKAFGVRVDVSSAKDAESMVEKTTAKWGRV  102 (277)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH--HCTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH--hCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            4567887887655 444444433 2345899999997655444443  234789999999986532111       1378


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+++.++.
T Consensus       103 D~lv~nAg  110 (277)
T 4dqx_A          103 DVLVNNAG  110 (277)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99998866

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=89.27  E-value=2.5  Score=35.17  Aligned_cols=79  Identities=15%  Similarity=0.120  Sum_probs=49.4

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhccc-------CCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRML-------VGM  213 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~-------~~~  213 (264)
                      .+.+||=.|+.. .+...+++.+ ....+|+.++.++..++++.+.... ..++.++..|+.+.......       .+.
T Consensus         6 ~~k~~lVTGas~-gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~   84 (247)
T 2jah_A            6 QGKVALITGASS-GIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEALGG   84 (247)
T ss_dssp             TTCEEEEESCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            356788888665 4555544433 2345899999996554444333222 34799999999986532111       147


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      +|+++.+..
T Consensus        85 id~lv~nAg   93 (247)
T 2jah_A           85 LDILVNNAG   93 (247)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            899998765

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=89.24  E-value=1.1  Score=37.71  Aligned_cols=79  Identities=13%  Similarity=0.081  Sum_probs=51.1

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhccc-------CCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRML-------VGM  213 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~~-------~~~  213 (264)
                      .+.+||=.|+. +.+..++++.+ ....+|+.++.++..++++.+... ...+++++..|+.+.......       .+.
T Consensus        28 ~~k~vlITGas-~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~  106 (262)
T 3rkr_A           28 SGQVAVVTGAS-RGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAHGR  106 (262)
T ss_dssp             TTCEEEESSTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            46788877765 55555555443 234589999999765545444332 234799999999986532111       246


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      +|+|+.++.
T Consensus       107 id~lv~~Ag  115 (262)
T 3rkr_A          107 CDVLVNNAG  115 (262)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            899998865

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=89.24  E-value=2  Score=36.53  Aligned_cols=79  Identities=14%  Similarity=0.142  Sum_probs=49.8

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc-------cCCCc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMV  214 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~-------~~~~f  214 (264)
                      .+.+||=.|+. +.+...+++.+ ....+|+.++.++..++++.+......++.++..|+++......       ..+.+
T Consensus        28 ~~k~vlVTGas-~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  106 (276)
T 2b4q_A           28 AGRIALVTGGS-RGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYGDCQAIPADLSSEAGARRLAQALGELSARL  106 (276)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHHHHCSCC
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence            45678877765 45555554443 23458999999975544444433222378999999998653211       12478


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+|+.++.
T Consensus       107 D~lvnnAg  114 (276)
T 2b4q_A          107 DILVNNAG  114 (276)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99998865

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=89.14  E-value=2.6  Score=35.51  Aligned_cols=79  Identities=18%  Similarity=0.183  Sum_probs=50.4

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhccc-------CC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRML-------VG  212 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~-------~~  212 (264)
                      .+.+||=.|++ +.+..++++.+ ....+|+.++.++..++++.+.....  .++.+++.|+++.......       .+
T Consensus         9 ~~k~vlVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   87 (262)
T 3pk0_A            9 QGRSVVVTGGT-KGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEFG   87 (262)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            45677776765 45555555443 23458999999976554544433322  4799999999986532111       13


Q ss_pred             CccEEEEcCC
Q 024665          213 MVDVIFSDVA  222 (264)
Q Consensus       213 ~fD~V~~d~p  222 (264)
                      .+|+++.+..
T Consensus        88 ~id~lvnnAg   97 (262)
T 3pk0_A           88 GIDVVCANAG   97 (262)
T ss_dssp             CCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7899998865

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=89.12  E-value=0.27  Score=47.95  Aligned_cols=81  Identities=15%  Similarity=0.000  Sum_probs=50.3

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC------C-----CCEEEEEeCChHHHHHHHHH--------------hhc-------
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG------P-----NGVVYAVEFSHRSGRDLVNM--------------AKK-------  190 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~------~-----~g~V~avD~s~~~~~~l~~~--------------a~~-------  190 (264)
                      +.-+|+|+|.|+|...+.+.+...      |     .-+++++|..|-...++.+.              ...       
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  137 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG  137 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence            345899999999998888776541      1     14799999843111122210              000       


Q ss_pred             ---------CCCeEEEEcCCCCchhhc--ccCCCccEEEEcCCC
Q 024665          191 ---------RTNVIPIIEDARHPAKYR--MLVGMVDVIFSDVAQ  223 (264)
Q Consensus       191 ---------~~nV~~i~~D~~~~~~~~--~~~~~fD~V~~d~p~  223 (264)
                               +..++++.+|+.+..+.-  .....||++|+|.-.
T Consensus       138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~  181 (689)
T 3pvc_A          138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFA  181 (689)
T ss_dssp             EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSC
T ss_pred             ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCC
Confidence                     115678899998754320  013679999999763

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=89.11  E-value=3.1  Score=35.12  Aligned_cols=79  Identities=13%  Similarity=0.120  Sum_probs=50.5

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhccc-------CCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRML-------VGM  213 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~-------~~~  213 (264)
                      .+.+||=.|+. |.+...+++.+ ....+|+.++.++...+++.+.... ..++.++..|+.+.......       .+.
T Consensus        30 ~~k~vlITGas-ggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~  108 (272)
T 1yb1_A           30 TGEIVLITGAG-HGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGD  108 (272)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCC
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHHCCC
Confidence            45678877765 55666665544 2345899999997554444433322 34799999999986532111       247


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      +|+|+.++.
T Consensus       109 iD~li~~Ag  117 (272)
T 1yb1_A          109 VSILVNNAG  117 (272)
T ss_dssp             CSEEEECCC
T ss_pred             CcEEEECCC
Confidence            899998875

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=89.10  E-value=3.3  Score=34.13  Aligned_cols=79  Identities=13%  Similarity=0.199  Sum_probs=50.9

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhccc-------CCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRML-------VGM  213 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~~-------~~~  213 (264)
                      .+.+||=.| ++|.+..++++.+- ...+|++++.++...+++.+... ...++.++..|+.+.......       ...
T Consensus        10 ~~~~vlVtG-asggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   88 (255)
T 1fmc_A           10 DGKCAIITG-AGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGK   88 (255)
T ss_dssp             TTCEEEETT-TTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence            356777666 46777777766543 34589999999655444433322 234789999999986532211       137


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      +|+|+.+..
T Consensus        89 ~d~vi~~Ag   97 (255)
T 1fmc_A           89 VDILVNNAG   97 (255)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            899998765

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=89.04  E-value=2.6  Score=37.42  Aligned_cols=41  Identities=17%  Similarity=0.406  Sum_probs=32.7

Q ss_pred             cCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCEEEEEeCChHH
Q 024665          139 IWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRS  180 (264)
Q Consensus       139 ~~l~~g~~VLDlG~G~-G~~s~~la~~~~~~g~V~avD~s~~~  180 (264)
                      ..++++++||-+|||+ |.+++.+|...+ ..+|+++|.+++-
T Consensus       186 ~~~~~g~~VlV~GaG~vG~~a~qlak~~G-a~~Vi~~~~~~~~  227 (371)
T 1f8f_A          186 LKVTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESR  227 (371)
T ss_dssp             TCCCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHH
Confidence            4589999999999876 777888888765 3379999999644

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=88.99  E-value=1.6  Score=36.70  Aligned_cols=79  Identities=11%  Similarity=0.199  Sum_probs=49.7

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhccc-------CCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRML-------VGM  213 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~~-------~~~  213 (264)
                      .+.+||=.|++.|. ..++++.+ ....+|+.++.++...+++.+... ...++.++..|+.+.......       .+.
T Consensus        11 ~~k~vlVTGas~gI-G~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   89 (256)
T 3gaf_A           11 NDAVAIVTGAAAGI-GRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQFGK   89 (256)
T ss_dssp             TTCEEEECSCSSHH-HHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            46678877776654 44333332 224589999999755544444332 234899999999986532111       147


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      +|+++.++.
T Consensus        90 id~lv~nAg   98 (256)
T 3gaf_A           90 ITVLVNNAG   98 (256)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            899998865

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=88.99  E-value=0.85  Score=38.07  Aligned_cols=79  Identities=15%  Similarity=0.039  Sum_probs=50.0

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC--CCCEEEEEeCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhccc-------CC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG--PNGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRML-------VG  212 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~--~~g~V~avD~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~~-------~~  212 (264)
                      .+.+||=.| |+|.+..++++.+-  ...+|+.++.++...+++.+... ...+++++..|+.+.......       .+
T Consensus         3 ~~k~vlITG-asggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   81 (276)
T 1wma_A            3 GIHVALVTG-GNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYG   81 (276)
T ss_dssp             CCCEEEESS-CSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeC-CCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            345677555 56777777766543  24689999998654434333322 234789999999986532111       13


Q ss_pred             CccEEEEcCC
Q 024665          213 MVDVIFSDVA  222 (264)
Q Consensus       213 ~fD~V~~d~p  222 (264)
                      .+|+||.++.
T Consensus        82 ~id~li~~Ag   91 (276)
T 1wma_A           82 GLDVLVNNAG   91 (276)
T ss_dssp             SEEEEEECCC
T ss_pred             CCCEEEECCc
Confidence            7899998865

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=88.86  E-value=2  Score=36.52  Aligned_cols=79  Identities=15%  Similarity=0.119  Sum_probs=48.2

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc------CCCcc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML------VGMVD  215 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~------~~~fD  215 (264)
                      .+.+||=.|++.| +...+++.+ ....+|+.++.++...+...+......++.++..|+.+......+      .+.+|
T Consensus        30 ~gk~~lVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~g~iD  108 (273)
T 3uf0_A           30 AGRTAVVTGAGSG-IGRAIAHGYARAGAHVLAWGRTDGVKEVADEIADGGGSAEAVVADLADLEGAANVAEELAATRRVD  108 (273)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSTHHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEcCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHhcCCCc
Confidence            4678888887655 444444333 234589999966544222222223334799999999986532111      14789


Q ss_pred             EEEEcCC
Q 024665          216 VIFSDVA  222 (264)
Q Consensus       216 ~V~~d~p  222 (264)
                      +++.++.
T Consensus       109 ~lv~nAg  115 (273)
T 3uf0_A          109 VLVNNAG  115 (273)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9998865

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=88.75  E-value=1.5  Score=37.20  Aligned_cols=79  Identities=16%  Similarity=0.134  Sum_probs=48.9

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCC------------hHHHHHHHHHh-hcCCCeEEEEcCCCCchhhc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFS------------HRSGRDLVNMA-KKRTNVIPIIEDARHPAKYR  208 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s------------~~~~~~l~~~a-~~~~nV~~i~~D~~~~~~~~  208 (264)
                      .+.+||=.|++.|. ..++++.+ ....+|+.+|.+            .+.+++..... ....++.++..|+.+.....
T Consensus         9 ~gk~vlVTGas~gI-G~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~   87 (287)
T 3pxx_A            9 QDKVVLVTGGARGQ-GRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAVS   87 (287)
T ss_dssp             TTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHH
T ss_pred             CCCEEEEeCCCChH-HHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHHH
Confidence            46788888877654 44444333 234689999986            44333333322 22348999999999865321


Q ss_pred             cc-------CCCccEEEEcCC
Q 024665          209 ML-------VGMVDVIFSDVA  222 (264)
Q Consensus       209 ~~-------~~~fD~V~~d~p  222 (264)
                      ..       .+.+|+++.+..
T Consensus        88 ~~~~~~~~~~g~id~lv~nAg  108 (287)
T 3pxx_A           88 RELANAVAEFGKLDVVVANAG  108 (287)
T ss_dssp             HHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHcCCCCEEEECCC
Confidence            11       137899998876

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=88.64  E-value=1.5  Score=38.58  Aligned_cols=79  Identities=13%  Similarity=0.090  Sum_probs=54.0

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCC---CEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPN---GVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~---g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      .+.+||=.| |+|.+..++++.+-..   .+|++++.++....++.+.. ...+++++.+|+++..........+|+||.
T Consensus        20 ~~k~vlVTG-atG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vih   97 (344)
T 2gn4_A           20 DNQTILITG-GTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEF-NDPRMRFFIGDVRDLERLNYALEGVDICIH   97 (344)
T ss_dssp             TTCEEEEET-TTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHH-CCTTEEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred             CCCEEEEEC-CCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHh-cCCCEEEEECCCCCHHHHHHHHhcCCEEEE
Confidence            467888665 5688888887665332   28999999965433333222 135899999999987654344467999998


Q ss_pred             cCCC
Q 024665          220 DVAQ  223 (264)
Q Consensus       220 d~p~  223 (264)
                      .+..
T Consensus        98 ~Aa~  101 (344)
T 2gn4_A           98 AAAL  101 (344)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            8763

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=88.56  E-value=4  Score=34.54  Aligned_cols=79  Identities=19%  Similarity=0.273  Sum_probs=49.3

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeC-------------ChHHHHHHHHHhhc-CCCeEEEEcCCCCchhh
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEF-------------SHRSGRDLVNMAKK-RTNVIPIIEDARHPAKY  207 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~-------------s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~  207 (264)
                      .+.+||=.|++.|. ..++++.+ ....+|+.+|.             +++.++++.+.... ..++.+++.|+.+....
T Consensus        14 ~gk~~lVTGas~gI-G~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v   92 (280)
T 3pgx_A           14 QGRVAFITGAARGQ-GRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAAL   92 (280)
T ss_dssp             TTCEEEEESTTSHH-HHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHH
T ss_pred             CCCEEEEECCCcHH-HHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHH
Confidence            56788888877654 44444332 23468999997             44444444433322 34899999999986532


Q ss_pred             ccc-------CCCccEEEEcCC
Q 024665          208 RML-------VGMVDVIFSDVA  222 (264)
Q Consensus       208 ~~~-------~~~fD~V~~d~p  222 (264)
                      ...       .+.+|+++.+..
T Consensus        93 ~~~~~~~~~~~g~id~lvnnAg  114 (280)
T 3pgx_A           93 RELVADGMEQFGRLDVVVANAG  114 (280)
T ss_dssp             HHHHHHHHHHHCCCCEEEECCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCC
Confidence            111       247899998866

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=88.54  E-value=8  Score=32.68  Aligned_cols=79  Identities=13%  Similarity=0.148  Sum_probs=50.7

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhccc-------CCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRML-------VGM  213 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~-------~~~  213 (264)
                      .+.+||=.|+. |.+...+++.+- ...+|+.++.++...+++.+.... ..++.++..|+++.......       .+.
T Consensus        43 ~~k~vlITGas-ggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~  121 (285)
T 2c07_A           43 ENKVALVTGAG-RGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKN  121 (285)
T ss_dssp             SSCEEEEESTT-SHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            35678877765 666666666554 345899998886544444333322 34789999999986532111       246


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      +|+||.++.
T Consensus       122 id~li~~Ag  130 (285)
T 2c07_A          122 VDILVNNAG  130 (285)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            899998865

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=88.46  E-value=4  Score=34.79  Aligned_cols=79  Identities=16%  Similarity=0.204  Sum_probs=50.5

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhccc-------CCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRML-------VGM  213 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~-------~~~  213 (264)
                      ++.+||=.|++.|. ...+++.+ ....+|+.++.++..++++.+.... ..++.++..|+.+.......       .+.
T Consensus        27 ~~k~~lVTGas~GI-G~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  105 (283)
T 3v8b_A           27 PSPVALITGAGSGI-GRATALALAADGVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKFGH  105 (283)
T ss_dssp             CCCEEEEESCSSHH-HHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            45678888876654 44444332 2346899999997655554443322 34799999999986432111       247


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      +|+++.++.
T Consensus       106 iD~lVnnAg  114 (283)
T 3v8b_A          106 LDIVVANAG  114 (283)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            899998765

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=88.34  E-value=5.4  Score=33.92  Aligned_cols=77  Identities=18%  Similarity=0.242  Sum_probs=52.4

Q ss_pred             CCCEEEEEcccCCh---HHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhcc-------cC
Q 024665          143 PGARVLYLGAASGT---TVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRM-------LV  211 (264)
Q Consensus       143 ~g~~VLDlG~G~G~---~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~-------~~  211 (264)
                      ++.++|=-|+++|.   ++..||+   ...+|+.+|.+++.+++..+.... ..++.+++.|+++......       ..
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~---~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~   82 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFAL---NDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETY   82 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH---cCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            46788888887776   3333333   356899999997666555554433 3489999999998753211       12


Q ss_pred             CCccEEEEcCC
Q 024665          212 GMVDVIFSDVA  222 (264)
Q Consensus       212 ~~fD~V~~d~p  222 (264)
                      +..|+++.|..
T Consensus        83 G~iDiLVNNAG   93 (254)
T 4fn4_A           83 SRIDVLCNNAG   93 (254)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCc
Confidence            57899998864

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=88.34  E-value=2.7  Score=35.64  Aligned_cols=79  Identities=13%  Similarity=0.214  Sum_probs=48.1

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCC-hHHHHHHHHHhh-cCCCeEEEEcCCCCchhhccc-------CC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFS-HRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRML-------VG  212 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s-~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~~-------~~  212 (264)
                      .+.+||=.|++.|. ...+++.+ ....+|+.++.+ ....+++.+... ...++.++..|+.+.......       .+
T Consensus        30 ~gk~~lVTGas~GI-G~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  108 (271)
T 3v2g_A           30 AGKTAFVTGGSRGI-GAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEALG  108 (271)
T ss_dssp             TTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            46788888877654 44444333 234578888765 333333333322 234799999999986532111       13


Q ss_pred             CccEEEEcCC
Q 024665          213 MVDVIFSDVA  222 (264)
Q Consensus       213 ~fD~V~~d~p  222 (264)
                      .+|+++.++.
T Consensus       109 ~iD~lvnnAg  118 (271)
T 3v2g_A          109 GLDILVNSAG  118 (271)
T ss_dssp             CCCEEEECCC
T ss_pred             CCcEEEECCC
Confidence            7899998865

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=88.32  E-value=4.1  Score=33.89  Aligned_cols=77  Identities=12%  Similarity=0.126  Sum_probs=47.7

Q ss_pred             CEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhccc-------CCCcc
Q 024665          145 ARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRML-------VGMVD  215 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~~-------~~~fD  215 (264)
                      .+||=.|+. +.+..++++.+- ...+|+.++.++...+++.+... ...++.++..|+.+.......       .+.+|
T Consensus         3 k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id   81 (256)
T 1geg_A            3 KVALVTGAG-QGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFD   81 (256)
T ss_dssp             CEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred             CEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence            467766755 455555554432 34589999999655444433322 234789999999986532111       24799


Q ss_pred             EEEEcCC
Q 024665          216 VIFSDVA  222 (264)
Q Consensus       216 ~V~~d~p  222 (264)
                      +|+.+..
T Consensus        82 ~lv~nAg   88 (256)
T 1geg_A           82 VIVNNAG   88 (256)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9998874

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=88.27  E-value=1.2  Score=39.43  Aligned_cols=75  Identities=20%  Similarity=0.184  Sum_probs=43.6

Q ss_pred             CEEEEEcccCChHHHH---HHHHhCCCCE--EEEEeCCh------------HHHHHHHHHhhc--CC--CeEEEEcCCCC
Q 024665          145 ARVLYLGAASGTTVSH---VSDIVGPNGV--VYAVEFSH------------RSGRDLVNMAKK--RT--NVIPIIEDARH  203 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~---la~~~~~~g~--V~avD~s~------------~~~~~l~~~a~~--~~--nV~~i~~D~~~  203 (264)
                      -+|||+|-|+|.-.+.   .+....+..+  .+++|..+            .+.+.+.+....  ..  .++++.+|+.+
T Consensus        98 ~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~~  177 (308)
T 3vyw_A           98 IRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDARK  177 (308)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHHH
T ss_pred             cEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHHH
Confidence            4799999999985443   3334455554  57777521            111112121111  11  45778999977


Q ss_pred             chhhcccC-CCccEEEEcC
Q 024665          204 PAKYRMLV-GMVDVIFSDV  221 (264)
Q Consensus       204 ~~~~~~~~-~~fD~V~~d~  221 (264)
                      ..+  .+. ..||+|+.|.
T Consensus       178 ~l~--~l~~~~~Da~flDg  194 (308)
T 3vyw_A          178 RIK--EVENFKADAVFHDA  194 (308)
T ss_dssp             HGG--GCCSCCEEEEEECC
T ss_pred             HHh--hhcccceeEEEeCC
Confidence            543  233 3799999996

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=88.26  E-value=1.1  Score=37.83  Aligned_cols=77  Identities=10%  Similarity=0.138  Sum_probs=50.3

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc-------cCCCc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMV  214 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~-------~~~~f  214 (264)
                      .+.+||=.|+++|. ..++++.+ ....+|+.++.++..++++.+..  ..++.++..|+++......       ..+.+
T Consensus         7 ~gk~~lVTGas~gI-G~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   83 (255)
T 4eso_A            7 QGKKAIVIGGTHGM-GLATVRRLVEGGAEVLLTGRNESNIARIREEF--GPRVHALRSDIADLNEIAVLGAAAGQTLGAI   83 (255)
T ss_dssp             TTCEEEEETCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--GGGEEEEECCTTCHHHHHHHHHHHHHHHSSE
T ss_pred             CCCEEEEECCCCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--CCcceEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            46788888876654 44444333 23458999999976554544433  2478999999998653211       12478


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+++.+..
T Consensus        84 d~lv~nAg   91 (255)
T 4eso_A           84 DLLHINAG   91 (255)
T ss_dssp             EEEEECCC
T ss_pred             CEEEECCC
Confidence            99998865

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=88.23  E-value=2.8  Score=34.91  Aligned_cols=77  Identities=17%  Similarity=0.308  Sum_probs=49.8

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-------CCCc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGMV  214 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-------~~~f  214 (264)
                      .+.+||=.|++.|. ...+++.+ ....+|+.++.++..++++.+..  ..++.+++.|+.+.......       .+.+
T Consensus         5 ~gk~vlVTGas~gI-G~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   81 (247)
T 3rwb_A            5 AGKTALVTGAAQGI-GKAIAARLAADGATVIVSDINAEGAKAAAASI--GKKARAIAADISDPGSVKALFAEIQALTGGI   81 (247)
T ss_dssp             TTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH--CTTEEECCCCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--CCceEEEEcCCCCHHHHHHHHHHHHHHCCCC
Confidence            46678888876554 44444333 23458999999976554444333  45799999999986532111       1478


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+++.+..
T Consensus        82 d~lv~nAg   89 (247)
T 3rwb_A           82 DILVNNAS   89 (247)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99998866

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=88.23  E-value=1.2  Score=37.33  Aligned_cols=82  Identities=12%  Similarity=0.122  Sum_probs=52.7

Q ss_pred             CCCCCEEEEEccc-CChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-------C
Q 024665          141 IKPGARVLYLGAA-SGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------V  211 (264)
Q Consensus       141 l~~g~~VLDlG~G-~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-------~  211 (264)
                      ..++.+||=.|+. ++.+..++++.+- ...+|+.++.+.+..+.+.+......++.++..|+++......+       .
T Consensus        11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   90 (271)
T 3ek2_A           11 FLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTHW   90 (271)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHC
T ss_pred             ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHHHc
Confidence            4467889999985 3555665554442 34589999988544333334333344688999999986532111       2


Q ss_pred             CCccEEEEcCC
Q 024665          212 GMVDVIFSDVA  222 (264)
Q Consensus       212 ~~fD~V~~d~p  222 (264)
                      +.+|+++.++.
T Consensus        91 g~id~lv~nAg  101 (271)
T 3ek2_A           91 DSLDGLVHSIG  101 (271)
T ss_dssp             SCEEEEEECCC
T ss_pred             CCCCEEEECCc
Confidence            47899998865

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=88.18  E-value=3.3  Score=34.88  Aligned_cols=79  Identities=18%  Similarity=0.174  Sum_probs=49.7

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhh--cCCCeEEEEcCCCCchhhccc-------CC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAK--KRTNVIPIIEDARHPAKYRML-------VG  212 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~--~~~nV~~i~~D~~~~~~~~~~-------~~  212 (264)
                      .+.+||=.|++.| +..++++.+ ....+|+.++.++..++++.+...  ...++.+++.|+.+.......       .+
T Consensus        19 ~~k~vlVTGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   97 (266)
T 4egf_A           19 DGKRALITGATKG-IGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEAFG   97 (266)
T ss_dssp             TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            4567777776654 454444443 234589999999655444433322  235799999999986532111       24


Q ss_pred             CccEEEEcCC
Q 024665          213 MVDVIFSDVA  222 (264)
Q Consensus       213 ~fD~V~~d~p  222 (264)
                      .+|+++.++.
T Consensus        98 ~id~lv~nAg  107 (266)
T 4egf_A           98 GLDVLVNNAG  107 (266)
T ss_dssp             SCSEEEEECC
T ss_pred             CCCEEEECCC
Confidence            7899998865

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=88.15  E-value=0.8  Score=40.48  Aligned_cols=41  Identities=15%  Similarity=0.142  Sum_probs=31.9

Q ss_pred             cccCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCEEEEEeCChH
Q 024665          137 DNIWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHR  179 (264)
Q Consensus       137 ~~~~l~~g~~VLDlG~G~-G~~s~~la~~~~~~g~V~avD~s~~  179 (264)
                      ....++++++||-+|||+ |.+++.+|...+  .+|+++|.+++
T Consensus       170 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~  211 (348)
T 3two_A          170 KFSKVTKGTKVGVAGFGGLGSMAVKYAVAMG--AEVSVFARNEH  211 (348)
T ss_dssp             HHTTCCTTCEEEEESCSHHHHHHHHHHHHTT--CEEEEECSSST
T ss_pred             HhcCCCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCCHH
Confidence            344689999999999865 667777887754  48999998853

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=88.09  E-value=2.1  Score=36.39  Aligned_cols=78  Identities=10%  Similarity=0.139  Sum_probs=49.1

Q ss_pred             CCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhccc-------CCCc
Q 024665          144 GARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRML-------VGMV  214 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~-------~~~f  214 (264)
                      +.+||=.|+++| +...+++.+ ....+|+.++.++..++++.+.... ..++.++..|+++.......       .+.+
T Consensus         4 ~k~~lVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   82 (264)
T 3tfo_A            4 DKVILITGASGG-IGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGRI   82 (264)
T ss_dssp             TCEEEESSTTSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCEEEEeCCccH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            456777776654 444444433 2346899999997655554443322 34788999999986532111       2478


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+++.+..
T Consensus        83 D~lVnnAG   90 (264)
T 3tfo_A           83 DVLVNNAG   90 (264)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99998865

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=88.04  E-value=3.4  Score=36.00  Aligned_cols=79  Identities=14%  Similarity=0.218  Sum_probs=50.3

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhh-cCC--CeEEEEcCCCCchhhccc-------C
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAK-KRT--NVIPIIEDARHPAKYRML-------V  211 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~-~~~--nV~~i~~D~~~~~~~~~~-------~  211 (264)
                      .+.+||=.|+++|. ..+++..+ ....+|+.++.++..++++.+... ...  ++.++..|+++.......       .
T Consensus         7 ~~k~vlVTGas~gI-G~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   85 (319)
T 3ioy_A            7 AGRTAFVTGGANGV-GIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARF   85 (319)
T ss_dssp             TTCEEEEETTTSTH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEcCCchHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhC
Confidence            46688888887665 34433332 334589999999655444443322 222  799999999986532111       2


Q ss_pred             CCccEEEEcCC
Q 024665          212 GMVDVIFSDVA  222 (264)
Q Consensus       212 ~~fD~V~~d~p  222 (264)
                      +.+|+|+.+..
T Consensus        86 g~id~lv~nAg   96 (319)
T 3ioy_A           86 GPVSILCNNAG   96 (319)
T ss_dssp             CCEEEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            47899998876

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=88.02  E-value=3.4  Score=34.83  Aligned_cols=79  Identities=15%  Similarity=0.238  Sum_probs=48.9

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCC------------hHHHHHHHHHh-hcCCCeEEEEcCCCCchhhc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFS------------HRSGRDLVNMA-KKRTNVIPIIEDARHPAKYR  208 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s------------~~~~~~l~~~a-~~~~nV~~i~~D~~~~~~~~  208 (264)
                      .+.+||=.|+..| +..++++.+ ....+|+.+|.+            ++.+++..+.. ....++.++..|+++.....
T Consensus        12 ~gk~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~   90 (278)
T 3sx2_A           12 TGKVAFITGAARG-QGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRESLS   90 (278)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHH
T ss_pred             CCCEEEEECCCCh-HHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH
Confidence            4678888886655 444444333 234689999976            43333333322 22358999999999865321


Q ss_pred             cc-------CCCccEEEEcCC
Q 024665          209 ML-------VGMVDVIFSDVA  222 (264)
Q Consensus       209 ~~-------~~~fD~V~~d~p  222 (264)
                      ..       .+.+|+++.+..
T Consensus        91 ~~~~~~~~~~g~id~lv~nAg  111 (278)
T 3sx2_A           91 AALQAGLDELGRLDIVVANAG  111 (278)
T ss_dssp             HHHHHHHHHHCCCCEEEECCC
T ss_pred             HHHHHHHHHcCCCCEEEECCC
Confidence            11       147899998876

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=88.00  E-value=1.9  Score=36.78  Aligned_cols=77  Identities=13%  Similarity=0.149  Sum_probs=49.4

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-------CCCc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGMV  214 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-------~~~f  214 (264)
                      .+.+||=.|++.|. ..++++.+ ....+|+.+|.++..++++.+..  ..++.++..|+++.......       .+.+
T Consensus        28 ~gk~vlVTGas~gI-G~aia~~la~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  104 (277)
T 3gvc_A           28 AGKVAIVTGAGAGI-GLAVARRLADEGCHVLCADIDGDAADAAATKI--GCGAAACRVDVSDEQQIIAMVDACVAAFGGV  104 (277)
T ss_dssp             TTCEEEETTTTSTH-HHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH--CSSCEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEECCCcHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc--CCcceEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            46678877776664 33333332 23458999999976554444333  34789999999986532111       1478


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+++.+..
T Consensus       105 D~lvnnAg  112 (277)
T 3gvc_A          105 DKLVANAG  112 (277)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99998865

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=87.84  E-value=2.9  Score=35.90  Aligned_cols=81  Identities=14%  Similarity=0.137  Sum_probs=50.8

Q ss_pred             CCCCEEEEEcccCC-hHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-------CC
Q 024665          142 KPGARVLYLGAASG-TTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VG  212 (264)
Q Consensus       142 ~~g~~VLDlG~G~G-~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-------~~  212 (264)
                      -.+.+||=.|++++ .+...+++.+ ....+|+.++.+++..+.+.+......++.++..|+++......+       .+
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  108 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKKWG  108 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcC
Confidence            35778999998754 2344433332 234589999998654333333333334789999999986532111       24


Q ss_pred             CccEEEEcCC
Q 024665          213 MVDVIFSDVA  222 (264)
Q Consensus       213 ~fD~V~~d~p  222 (264)
                      .+|+++.++.
T Consensus       109 ~iD~lVnnAG  118 (293)
T 3grk_A          109 KLDFLVHAIG  118 (293)
T ss_dssp             CCSEEEECCC
T ss_pred             CCCEEEECCc
Confidence            7899998876

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=87.76  E-value=1.9  Score=35.82  Aligned_cols=79  Identities=11%  Similarity=0.147  Sum_probs=49.9

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhccc-------CCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRML-------VGM  213 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~~-------~~~  213 (264)
                      .+.+||=.|+. |.+..++++.+- ...+|+.++.++...+++.+... ...+++++..|+.+.......       .+.
T Consensus        12 ~~k~vlItGas-ggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   90 (260)
T 3awd_A           12 DNRVAIVTGGA-QNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQEGR   90 (260)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            45678877765 556666655442 34589999999654433333322 234799999999986532111       136


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      +|+|+.++.
T Consensus        91 id~vi~~Ag   99 (260)
T 3awd_A           91 VDILVACAG   99 (260)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            899998764

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=87.70  E-value=1.6  Score=37.12  Aligned_cols=79  Identities=9%  Similarity=0.083  Sum_probs=49.2

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhccc-------CCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRML-------VGM  213 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~~-------~~~  213 (264)
                      .+.+||=.|++. .+...+++.+ ....+|+.++.++..++++.+... ...++.++..|+.+.......       .+.
T Consensus        27 ~~k~~lVTGas~-GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  105 (270)
T 3ftp_A           27 DKQVAIVTGASR-GIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEFGA  105 (270)
T ss_dssp             TTCEEEETTCSS-HHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence            456777666554 5555554433 234589999999655444443332 234788999999986532111       137


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      +|+++.++.
T Consensus       106 iD~lvnnAg  114 (270)
T 3ftp_A          106 LNVLVNNAG  114 (270)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            899998875

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=87.69  E-value=3.9  Score=34.51  Aligned_cols=79  Identities=16%  Similarity=0.119  Sum_probs=49.0

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhccc-------C
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRML-------V  211 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~-------~  211 (264)
                      .+.+||=.|+. |.+...+++.+- ...+|++++.++...+++.+....   ..++.++..|+.+.......       .
T Consensus        31 ~~k~vlVTGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  109 (279)
T 1xg5_A           31 RDRLALVTGAS-GGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH  109 (279)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhC
Confidence            35678877765 555555554432 345899999996544444333222   13688999999986532111       1


Q ss_pred             CCccEEEEcCC
Q 024665          212 GMVDVIFSDVA  222 (264)
Q Consensus       212 ~~fD~V~~d~p  222 (264)
                      ..+|+||.++.
T Consensus       110 g~iD~vi~~Ag  120 (279)
T 1xg5_A          110 SGVDICINNAG  120 (279)
T ss_dssp             CCCSEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            36899998765

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=87.52  E-value=3.9  Score=34.64  Aligned_cols=79  Identities=15%  Similarity=0.161  Sum_probs=50.0

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhh--cCCCeEEEEcCCCCchhhccc-------CC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAK--KRTNVIPIIEDARHPAKYRML-------VG  212 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~--~~~nV~~i~~D~~~~~~~~~~-------~~  212 (264)
                      .+.+||=.|++.| +...+++.+ ....+|+.++.+....++..+...  ...++.++..|+++.......       .+
T Consensus        26 ~~k~~lVTGas~G-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g  104 (277)
T 4fc7_A           26 RDKVAFITGGGSG-IGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALKEFG  104 (277)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            5678888887654 455554443 334589999999654333333221  234799999999986432111       14


Q ss_pred             CccEEEEcCC
Q 024665          213 MVDVIFSDVA  222 (264)
Q Consensus       213 ~fD~V~~d~p  222 (264)
                      .+|+++.++.
T Consensus       105 ~id~lv~nAg  114 (277)
T 4fc7_A          105 RIDILINCAA  114 (277)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCc
Confidence            7899998875

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=87.51  E-value=1.3  Score=37.76  Aligned_cols=79  Identities=9%  Similarity=0.025  Sum_probs=50.1

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhccc-------CCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRML-------VGM  213 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~-------~~~  213 (264)
                      .+.+||=.|++. .+...+++.+ ....+|+.++.++..++++.+.... ..++.++..|+.+.......       .+.
T Consensus        25 ~gk~~lVTGas~-gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  103 (271)
T 4ibo_A           25 GGRTALVTGSSR-GLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQGID  103 (271)
T ss_dssp             TTCEEEETTCSS-HHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHHTCC
T ss_pred             CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHCCC
Confidence            456777777654 4455554443 2345899999997655444443332 34899999999986532111       247


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      +|+++.+..
T Consensus       104 iD~lv~nAg  112 (271)
T 4ibo_A          104 VDILVNNAG  112 (271)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            899998866

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=87.51  E-value=3.4  Score=34.94  Aligned_cols=79  Identities=15%  Similarity=0.203  Sum_probs=48.7

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCC------------hHHHHHHHHHh-hcCCCeEEEEcCCCCchhhc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFS------------HRSGRDLVNMA-KKRTNVIPIIEDARHPAKYR  208 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s------------~~~~~~l~~~a-~~~~nV~~i~~D~~~~~~~~  208 (264)
                      .+.+||=.|++.| +..++++.+ ....+|+.+|.+            .+.+++..+.. ....++.++..|+++.....
T Consensus         9 ~~k~~lVTGas~g-IG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~   87 (281)
T 3s55_A            9 EGKTALITGGARG-MGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAALE   87 (281)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred             CCCEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH
Confidence            4678888887655 444444433 234589999986            33333333322 22348999999999865321


Q ss_pred             cc-------CCCccEEEEcCC
Q 024665          209 ML-------VGMVDVIFSDVA  222 (264)
Q Consensus       209 ~~-------~~~fD~V~~d~p  222 (264)
                      ..       .+.+|+++.+..
T Consensus        88 ~~~~~~~~~~g~id~lv~nAg  108 (281)
T 3s55_A           88 SFVAEAEDTLGGIDIAITNAG  108 (281)
T ss_dssp             HHHHHHHHHHTCCCEEEECCC
T ss_pred             HHHHHHHHhcCCCCEEEECCC
Confidence            11       147899998865

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=87.38  E-value=2.4  Score=35.99  Aligned_cols=79  Identities=13%  Similarity=0.013  Sum_probs=49.7

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcC-C---CeEEEEcCCCCchhhccc-------
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR-T---NVIPIIEDARHPAKYRML-------  210 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~-~---nV~~i~~D~~~~~~~~~~-------  210 (264)
                      .+.+||=.|++.| +..++++.+ ....+|+.++.++...++..+..... .   ++.+++.|+++.......       
T Consensus        10 ~~k~vlVTGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   88 (281)
T 3svt_A           10 QDRTYLVTGGGSG-IGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAW   88 (281)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            4667888887654 444444433 23458999999976554444433222 1   689999999986532111       


Q ss_pred             CCCccEEEEcCC
Q 024665          211 VGMVDVIFSDVA  222 (264)
Q Consensus       211 ~~~fD~V~~d~p  222 (264)
                      .+.+|+++.++.
T Consensus        89 ~g~id~lv~nAg  100 (281)
T 3svt_A           89 HGRLHGVVHCAG  100 (281)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            146899998865

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=87.36  E-value=5.4  Score=33.11  Aligned_cols=77  Identities=17%  Similarity=0.222  Sum_probs=49.6

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-------CCCc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGMV  214 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-------~~~f  214 (264)
                      .+.+||=.|++.|. ..++++.+ ....+|+.++.++..++++.+..  ..++.++..|+.+.......       .+.+
T Consensus         8 ~~k~vlITGas~gI-G~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   84 (261)
T 3n74_A            8 EGKVALITGAGSGF-GEGMAKRFAKGGAKVVIVDRDKAGAERVAGEI--GDAALAVAADISKEADVDAAVEAALSKFGKV   84 (261)
T ss_dssp             TTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--CTTEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh--CCceEEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence            45688888887654 33333332 23458999999976554444422  45799999999986532111       1368


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+++.++.
T Consensus        85 d~li~~Ag   92 (261)
T 3n74_A           85 DILVNNAG   92 (261)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCc
Confidence            99998865

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=87.33  E-value=2  Score=36.23  Aligned_cols=79  Identities=10%  Similarity=0.111  Sum_probs=48.6

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHh---h-cCCCeEEEEcCCCCchhhccc-------
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMA---K-KRTNVIPIIEDARHPAKYRML-------  210 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a---~-~~~nV~~i~~D~~~~~~~~~~-------  210 (264)
                      .+.+||=.|+. |.+..++++.+ ....+|+.++.++..++++.+..   . ...++.++..|+.+.......       
T Consensus         5 ~~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (278)
T 1spx_A            5 AEKVAIITGSS-NGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   83 (278)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHHH
Confidence            35567766665 55555555443 23458999999965544433332   1 123689999999986532111       


Q ss_pred             CCCccEEEEcCC
Q 024665          211 VGMVDVIFSDVA  222 (264)
Q Consensus       211 ~~~fD~V~~d~p  222 (264)
                      .+.+|+|+.+..
T Consensus        84 ~g~id~lv~~Ag   95 (278)
T 1spx_A           84 FGKLDILVNNAG   95 (278)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            137899998875

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=87.19  E-value=4.8  Score=34.46  Aligned_cols=79  Identities=13%  Similarity=0.059  Sum_probs=49.6

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC----CCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcc------
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG----PNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRM------  209 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~----~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~------  209 (264)
                      .+.+||=.|++.| +...+|..+-    ....|+.++.++..++++.+....   ..++.++..|+++......      
T Consensus        32 ~~k~~lVTGas~G-IG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~  110 (287)
T 3rku_A           32 AKKTVLITGASAG-IGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLP  110 (287)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSC
T ss_pred             CCCEEEEecCCCh-HHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence            4568888887654 4444444331    122899999997655454443322   3478999999998653211      


Q ss_pred             -cCCCccEEEEcCC
Q 024665          210 -LVGMVDVIFSDVA  222 (264)
Q Consensus       210 -~~~~fD~V~~d~p  222 (264)
                       ..+.+|+++.+..
T Consensus       111 ~~~g~iD~lVnnAG  124 (287)
T 3rku_A          111 QEFKDIDILVNNAG  124 (287)
T ss_dssp             GGGCSCCEEEECCC
T ss_pred             HhcCCCCEEEECCC
Confidence             1246899998865

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=87.16  E-value=5.4  Score=33.74  Aligned_cols=79  Identities=16%  Similarity=0.252  Sum_probs=49.3

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCC----------------hHHHHHHHHHhh-cCCCeEEEEcCCCCc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFS----------------HRSGRDLVNMAK-KRTNVIPIIEDARHP  204 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s----------------~~~~~~l~~~a~-~~~nV~~i~~D~~~~  204 (264)
                      .+.+||=.|+++|. ...+++.+ ....+|+.+|.+                ++.++++.+... ...++.++..|+++.
T Consensus        10 ~~k~~lVTGas~gI-G~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~   88 (286)
T 3uve_A           10 EGKVAFVTGAARGQ-GRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRDY   88 (286)
T ss_dssp             TTCEEEEESTTSHH-HHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCH
T ss_pred             CCCEEEEeCCCchH-HHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCCH
Confidence            46788888887664 44443332 234689999886                444444433332 234899999999986


Q ss_pred             hhhccc-------CCCccEEEEcCC
Q 024665          205 AKYRML-------VGMVDVIFSDVA  222 (264)
Q Consensus       205 ~~~~~~-------~~~fD~V~~d~p  222 (264)
                      ......       .+.+|+++.+..
T Consensus        89 ~~v~~~~~~~~~~~g~id~lv~nAg  113 (286)
T 3uve_A           89 DALKAAVDSGVEQLGRLDIIVANAG  113 (286)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHHhCCCCEEEECCc
Confidence            532111       147899998865

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=87.13  E-value=2.4  Score=36.42  Aligned_cols=79  Identities=16%  Similarity=0.249  Sum_probs=48.4

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChH-HHHHHHHHhhc-CCCeEEEEcCCCCchhhccc-------CC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHR-SGRDLVNMAKK-RTNVIPIIEDARHPAKYRML-------VG  212 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~-~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~-------~~  212 (264)
                      .+.+||=.|++.| +..++++.+ ....+|+.++.+.. ..+.+.+.... ..++.++..|+.+......+       .+
T Consensus        46 ~gk~vlVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  124 (291)
T 3ijr_A           46 KGKNVLITGGDSG-IGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQLG  124 (291)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            4678888887655 444444433 23458999998843 33233332222 34799999999986532111       24


Q ss_pred             CccEEEEcCC
Q 024665          213 MVDVIFSDVA  222 (264)
Q Consensus       213 ~fD~V~~d~p  222 (264)
                      .+|+++.+..
T Consensus       125 ~iD~lvnnAg  134 (291)
T 3ijr_A          125 SLNILVNNVA  134 (291)
T ss_dssp             SCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7899998854

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=87.11  E-value=1.1  Score=41.08  Aligned_cols=87  Identities=14%  Similarity=0.105  Sum_probs=56.4

Q ss_pred             CEEEEEcccCChHHHHHHHHhCC-CCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-CCCccEEEEcCC
Q 024665          145 ARVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-VGMVDVIFSDVA  222 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~~~-~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-~~~fD~V~~d~p  222 (264)
                      .+|+=+|+  |.++..+++.+.. .-.|++||.++..++.+.    . ..+.++.+|+++....... ...+|+|++-.+
T Consensus         5 ~~viIiG~--Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~----~-~g~~vi~GDat~~~~L~~agi~~A~~viv~~~   77 (413)
T 3l9w_A            5 MRVIIAGF--GRFGQITGRLLLSSGVKMVVLDHDPDHIETLR----K-FGMKVFYGDATRMDLLESAGAAKAEVLINAID   77 (413)
T ss_dssp             CSEEEECC--SHHHHHHHHHHHHTTCCEEEEECCHHHHHHHH----H-TTCCCEESCTTCHHHHHHTTTTTCSEEEECCS
T ss_pred             CeEEEECC--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH----h-CCCeEEEcCCCCHHHHHhcCCCccCEEEECCC
Confidence            45666665  7788888776643 347999999986644332    1 2577899999997643222 468999999888


Q ss_pred             CchHHHHH--HHHHhCCC
Q 024665          223 QPDQVCFL--CLILFQPI  238 (264)
Q Consensus       223 ~~~~~~~~--~~~~l~~~  238 (264)
                      .+......  ....+.|.
T Consensus        78 ~~~~n~~i~~~ar~~~p~   95 (413)
T 3l9w_A           78 DPQTNLQLTEMVKEHFPH   95 (413)
T ss_dssp             SHHHHHHHHHHHHHHCTT
T ss_pred             ChHHHHHHHHHHHHhCCC
Confidence            65543333  33444454

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=87.04  E-value=3.9  Score=34.07  Aligned_cols=79  Identities=14%  Similarity=0.153  Sum_probs=49.7

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhcccC--------C
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRMLV--------G  212 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~~~--------~  212 (264)
                      .+.+||=.|+ +|.+..++++.+- ...+|+.++.++...+++.+... ...++.++..|+.+........        .
T Consensus        13 ~~k~vlITGa-sggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   91 (266)
T 1xq1_A           13 KAKTVLVTGG-TKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGG   91 (266)
T ss_dssp             TTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            3567776665 5666666665442 34589999998654444333322 2347899999998864321111        5


Q ss_pred             CccEEEEcCC
Q 024665          213 MVDVIFSDVA  222 (264)
Q Consensus       213 ~fD~V~~d~p  222 (264)
                      .+|+|+.+..
T Consensus        92 ~id~li~~Ag  101 (266)
T 1xq1_A           92 KLDILINNLG  101 (266)
T ss_dssp             CCSEEEEECC
T ss_pred             CCcEEEECCC
Confidence            7899998865

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=87.02  E-value=3  Score=35.04  Aligned_cols=79  Identities=11%  Similarity=0.167  Sum_probs=49.6

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhccc-------C
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRML-------V  211 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~-------~  211 (264)
                      .+.+||=.|++.|. ...+++.+ ....+|+.++.++..++++.+....   ..++.++..|+++......+       .
T Consensus         7 ~~k~~lVTGas~GI-G~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (265)
T 3lf2_A            7 SEAVAVVTGGSSGI-GLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTL   85 (265)
T ss_dssp             TTCEEEEETCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            46678888877654 44444332 2345899999996554444443322   22599999999986532111       2


Q ss_pred             CCccEEEEcCC
Q 024665          212 GMVDVIFSDVA  222 (264)
Q Consensus       212 ~~fD~V~~d~p  222 (264)
                      +.+|+++.+..
T Consensus        86 g~id~lvnnAg   96 (265)
T 3lf2_A           86 GCASILVNNAG   96 (265)
T ss_dssp             CSCSEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            47899998875

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=86.95  E-value=1.1  Score=47.02  Aligned_cols=75  Identities=16%  Similarity=0.207  Sum_probs=49.1

Q ss_pred             CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhh-----------ccc--
Q 024665          144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY-----------RML--  210 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~-----------~~~--  210 (264)
                      .-+||||.||.|.+++-+... +-.-.|.|+|+++.+.+... .|  .++..+++.|+.++...           ..+  
T Consensus       851 ~l~viDLFsG~GGlslGfe~A-G~~~vv~avEid~~A~~ty~-~N--~p~~~~~~~DI~~l~~~~~~gdi~~~~~~~lp~  926 (1330)
T 3av4_A          851 KLRTLDVFSGCGGLSEGFHQA-GISETLWAIEMWDPAAQAFR-LN--NPGTTVFTEDCNVLLKLVMAGEVTNSLGQRLPQ  926 (1330)
T ss_dssp             CEEEEEETCTTSHHHHHHHHT-TSEEEEEEECCSHHHHHHHH-HH--CTTSEEECSCHHHHHHHHTTTCSBCSSCCBCCC
T ss_pred             CceEEecccCccHHHHHHHHC-CCCceEEEEECCHHHHHHHH-Hh--CCCCcEeeccHHHHhHhhhccchhhhhhhhccc
Confidence            357999999999999988753 21125889999987754332 23  24556777776533110           011  


Q ss_pred             CCCccEEEEcCC
Q 024665          211 VGMVDVIFSDVA  222 (264)
Q Consensus       211 ~~~fD~V~~d~p  222 (264)
                      ...+|+|+.-+|
T Consensus       927 ~~~vDvl~GGpP  938 (1330)
T 3av4_A          927 KGDVEMLCGGPP  938 (1330)
T ss_dssp             TTTCSEEEECCC
T ss_pred             cCccceEEecCC
Confidence            136899999999

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=86.82  E-value=3.6  Score=34.36  Aligned_cols=77  Identities=10%  Similarity=0.174  Sum_probs=48.2

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-------CCCc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGMV  214 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-------~~~f  214 (264)
                      .+.+||=.|+. |.+..++++.+ ....+|+.++.++...+++.+.  ...++.++..|+.+.......       .+.+
T Consensus        11 ~~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g~i   87 (263)
T 3ak4_A           11 SGRKAIVTGGS-KGIGAAIARALDKAGATVAIADLDVMAAQAVVAG--LENGGFAVEVDVTKRASVDAAMQKAIDALGGF   87 (263)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT--CTTCCEEEECCTTCHHHHHHHHHHHHHHHTCC
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH--HhcCCeEEEEeCCCHHHHHHHHHHHHHHcCCC
Confidence            46788877765 55555555443 2345899999997544333221  223688999999986532111       1378


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+|+.+..
T Consensus        88 D~lv~~Ag   95 (263)
T 3ak4_A           88 DLLCANAG   95 (263)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99998865

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=86.80  E-value=1.8  Score=34.47  Aligned_cols=71  Identities=17%  Similarity=0.178  Sum_probs=49.1

Q ss_pred             EEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccC---CCccEEEEcCC
Q 024665          146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLV---GMVDVIFSDVA  222 (264)
Q Consensus       146 ~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~---~~fD~V~~d~p  222 (264)
                      +||=.| ++|.+..++++.+-.. +|++++.++...+++.+...   . +++..|+.+........   +.+|+|+.+..
T Consensus         2 ~vlVtG-asg~iG~~la~~l~~~-~V~~~~r~~~~~~~~~~~~~---~-~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag   75 (207)
T 2yut_A            2 RVLITG-ATGGLGGAFARALKGH-DLLLSGRRAGALAELAREVG---A-RALPADLADELEAKALLEEAGPLDLLVHAVG   75 (207)
T ss_dssp             EEEEET-TTSHHHHHHHHHTTTS-EEEEECSCHHHHHHHHHHHT---C-EECCCCTTSHHHHHHHHHHHCSEEEEEECCC
T ss_pred             EEEEEc-CCcHHHHHHHHHHHhC-CEEEEECCHHHHHHHHHhcc---C-cEEEeeCCCHHHHHHHHHhcCCCCEEEECCC
Confidence            455555 5788899999888777 99999999655444333222   2 78899999865432222   37999998765

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=86.77  E-value=3.5  Score=33.98  Aligned_cols=78  Identities=13%  Similarity=0.096  Sum_probs=49.7

Q ss_pred             CCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhcc-------cCCCc
Q 024665          144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRM-------LVGMV  214 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~-------~~~~f  214 (264)
                      +.+||=.|+. +.+..++++.+- ...+|+.++.++...+++.+.... ..++.++..|+++......       ..+.+
T Consensus         5 ~k~vlITGas-~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   83 (247)
T 3lyl_A            5 EKVALVTGAS-RGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENLAI   83 (247)
T ss_dssp             TCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTCCC
T ss_pred             CCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            4567766655 555555554432 345899999997655554444332 3489999999998653211       12468


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+|+.++.
T Consensus        84 d~li~~Ag   91 (247)
T 3lyl_A           84 DILVNNAG   91 (247)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99998865

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=86.74  E-value=3.4  Score=34.28  Aligned_cols=77  Identities=13%  Similarity=0.135  Sum_probs=48.9

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccC-------CCc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLV-------GMV  214 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~-------~~f  214 (264)
                      .+.+||=.|+. |.+..++++.+- ...+|+.++.++...+++.+..  ..++.++..|+.+........       +.+
T Consensus        11 ~~k~vlVTGas-ggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   87 (265)
T 2o23_A           11 KGLVAVITGGA-SGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL--GNNCVFAPADVTSEKDVQTALALAKGKFGRV   87 (265)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHh--CCceEEEEcCCCCHHHHHHHHHHHHHHCCCC
Confidence            45678877775 556666655442 3458999998854333333222  347999999999865322111       378


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+|+.+..
T Consensus        88 d~li~~Ag   95 (265)
T 2o23_A           88 DVAVNCAG   95 (265)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCc
Confidence            99998865

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=86.66  E-value=2.8  Score=34.64  Aligned_cols=76  Identities=14%  Similarity=0.118  Sum_probs=48.1

Q ss_pred             CCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-------CCCcc
Q 024665          144 GARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGMVD  215 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-------~~~fD  215 (264)
                      +.+||=.|++.| +...++..+ ....+|+.++.++..++++.+...  .++.++..|+++.......       .+.+|
T Consensus         3 ~k~vlVTGas~G-IG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id   79 (235)
T 3l6e_A            3 LGHIIVTGAGSG-LGRALTIGLVERGHQVSMMGRRYQRLQQQELLLG--NAVIGIVADLAHHEDVDVAFAAAVEWGGLPE   79 (235)
T ss_dssp             CCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG--GGEEEEECCTTSHHHHHHHHHHHHHHHCSCS
T ss_pred             CCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc--CCceEEECCCCCHHHHHHHHHHHHHhcCCCc
Confidence            356777776655 444444333 234589999999765545444332  2689999999986532111       24789


Q ss_pred             EEEEcCC
Q 024665          216 VIFSDVA  222 (264)
Q Consensus       216 ~V~~d~p  222 (264)
                      +++.+..
T Consensus        80 ~lvnnAg   86 (235)
T 3l6e_A           80 LVLHCAG   86 (235)
T ss_dssp             EEEEECC
T ss_pred             EEEECCC
Confidence            9998866

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=86.55  E-value=1.9  Score=36.06  Aligned_cols=79  Identities=20%  Similarity=0.222  Sum_probs=49.4

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeC-ChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhcccC-------C
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEF-SHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRMLV-------G  212 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~-s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~~~-------~  212 (264)
                      .+.+||=.|+ +|.+..++++.+- ...+|+.++. ++...+++.+... ...++.++..|+.+........       .
T Consensus        20 ~~k~vlItGa-sggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   98 (274)
T 1ja9_A           20 AGKVALTTGA-GRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFG   98 (274)
T ss_dssp             TTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            3567886665 5677776666543 2358999998 6544434333222 2347899999999865321111       3


Q ss_pred             CccEEEEcCC
Q 024665          213 MVDVIFSDVA  222 (264)
Q Consensus       213 ~fD~V~~d~p  222 (264)
                      .+|+|+.++.
T Consensus        99 ~~d~vi~~Ag  108 (274)
T 1ja9_A           99 GLDFVMSNSG  108 (274)
T ss_dssp             CEEEEECCCC
T ss_pred             CCCEEEECCC
Confidence            7899998765

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=86.54  E-value=3.5  Score=35.10  Aligned_cols=79  Identities=13%  Similarity=0.169  Sum_probs=49.1

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeC-ChHHHHHHHHHhhc--CCCeEEEEcCCCCchhhcc-------cC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEF-SHRSGRDLVNMAKK--RTNVIPIIEDARHPAKYRM-------LV  211 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~-s~~~~~~l~~~a~~--~~nV~~i~~D~~~~~~~~~-------~~  211 (264)
                      .+.+||=.|++.|. ..++++.+ ....+|+.++. +++..+++.+....  ..++.++..|+.+......       ..
T Consensus        24 ~~k~~lVTGas~GI-G~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  102 (281)
T 3v2h_A           24 MTKTAVITGSTSGI-GLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVADRF  102 (281)
T ss_dssp             TTCEEEEETCSSHH-HHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHHHHC
Confidence            35678888876554 44444333 23458999998 45444444443332  3479999999998653211       12


Q ss_pred             CCccEEEEcCC
Q 024665          212 GMVDVIFSDVA  222 (264)
Q Consensus       212 ~~fD~V~~d~p  222 (264)
                      +.+|+++.++.
T Consensus       103 g~iD~lv~nAg  113 (281)
T 3v2h_A          103 GGADILVNNAG  113 (281)
T ss_dssp             SSCSEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            47899998866

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=86.49  E-value=2.3  Score=36.23  Aligned_cols=80  Identities=13%  Similarity=0.121  Sum_probs=49.9

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhccc-------CC
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRML-------VG  212 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~-------~~  212 (264)
                      ..+.+||=.|++.|. ..++++.+ ....+|+.++.++..++++.+.... ..++.++..|+++.......       .+
T Consensus        22 ~~~k~~lVTGas~GI-G~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  100 (279)
T 3sju_A           22 SRPQTAFVTGVSSGI-GLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERFG  100 (279)
T ss_dssp             ---CEEEEESTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             cCCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            356788888876654 44444333 2346899999997655454444332 34899999999986532111       24


Q ss_pred             CccEEEEcCC
Q 024665          213 MVDVIFSDVA  222 (264)
Q Consensus       213 ~fD~V~~d~p  222 (264)
                      .+|+++.++.
T Consensus       101 ~id~lv~nAg  110 (279)
T 3sju_A          101 PIGILVNSAG  110 (279)
T ss_dssp             SCCEEEECCC
T ss_pred             CCcEEEECCC
Confidence            7899998865

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=86.39  E-value=3.1  Score=37.83  Aligned_cols=76  Identities=14%  Similarity=0.155  Sum_probs=50.5

Q ss_pred             EEEEEcccCChHHHHHHHHhCCCC----EEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCC--CccEE
Q 024665          146 RVLYLGAASGTTVSHVSDIVGPNG----VVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVG--MVDVI  217 (264)
Q Consensus       146 ~VLDlG~G~G~~s~~la~~~~~~g----~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~--~fD~V  217 (264)
                      +||=+||  |.+...+++.+...+    .|+.+|.++..++++.+.....  .++.++..|+.+......+..  .+|+|
T Consensus         3 kVlIiGa--GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvV   80 (405)
T 4ina_A            3 KVLQIGA--GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIV   80 (405)
T ss_dssp             EEEEECC--SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEE
Confidence            6888888  577777776554333    8999999976555544433221  368899999988654322223  38999


Q ss_pred             EEcCCC
Q 024665          218 FSDVAQ  223 (264)
Q Consensus       218 ~~d~p~  223 (264)
                      +...+.
T Consensus        81 in~ag~   86 (405)
T 4ina_A           81 LNIALP   86 (405)
T ss_dssp             EECSCG
T ss_pred             EECCCc
Confidence            988763

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=86.39  E-value=1.5  Score=38.59  Aligned_cols=40  Identities=20%  Similarity=0.378  Sum_probs=31.9

Q ss_pred             CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCEEEEEeCChHH
Q 024665          140 WIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRS  180 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~-G~~s~~la~~~~~~g~V~avD~s~~~  180 (264)
                      .++++++||=+|||+ |.+++.+|...+ ..+|+++|.+++-
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g-~~~Vi~~~~~~~~  208 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVS-AARVIAVDLDDDR  208 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESCHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHH
Confidence            588999999999865 667778887764 4589999999743

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=86.36  E-value=2.5  Score=31.32  Aligned_cols=74  Identities=12%  Similarity=0.148  Sum_probs=47.8

Q ss_pred             CCEEEEEcccCChHHHHHHHHhCC-CCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-CCCccEEEEcC
Q 024665          144 GARVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-VGMVDVIFSDV  221 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~~-~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-~~~fD~V~~d~  221 (264)
                      ..+|+=+|+  |.++..+++.+.. ..+|+.+|.++...    +... ...+.++..|..+....... ...+|+|+...
T Consensus         6 ~~~v~I~G~--G~iG~~~a~~l~~~g~~v~~~d~~~~~~----~~~~-~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~   78 (144)
T 2hmt_A            6 NKQFAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKV----NAYA-SYATHAVIANATEENELLSLGIRNFEYVIVAI   78 (144)
T ss_dssp             CCSEEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHH----HTTT-TTCSEEEECCTTCHHHHHTTTGGGCSEEEECC
T ss_pred             CCcEEEECC--CHHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHH-HhCCEEEEeCCCCHHHHHhcCCCCCCEEEECC
Confidence            356888886  7888888776532 24699999986432    2221 12456788888775433222 35799999988


Q ss_pred             CCc
Q 024665          222 AQP  224 (264)
Q Consensus       222 p~~  224 (264)
                      +.+
T Consensus        79 ~~~   81 (144)
T 2hmt_A           79 GAN   81 (144)
T ss_dssp             CSC
T ss_pred             CCc
Confidence            764

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=86.27  E-value=3.9  Score=33.89  Aligned_cols=79  Identities=15%  Similarity=0.142  Sum_probs=48.3

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeC-ChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhccc-------CC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEF-SHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRML-------VG  212 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~-s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~~-------~~  212 (264)
                      .+.+||=.|+ +|.+..++++.+- ...+|+.++. ++...+++.+... ...++.++..|+.+.......       .+
T Consensus         6 ~~k~vlITGa-sggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   84 (261)
T 1gee_A            6 EGKVVVITGS-STGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFG   84 (261)
T ss_dssp             TTCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            3567776665 4666666655442 3458999998 6544333333222 234788999999986532111       13


Q ss_pred             CccEEEEcCC
Q 024665          213 MVDVIFSDVA  222 (264)
Q Consensus       213 ~fD~V~~d~p  222 (264)
                      .+|+|+.+..
T Consensus        85 ~id~li~~Ag   94 (261)
T 1gee_A           85 KLDVMINNAG   94 (261)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7899998865

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=86.08  E-value=2.6  Score=35.43  Aligned_cols=79  Identities=15%  Similarity=0.182  Sum_probs=47.9

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEE-eCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhccc-------CC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAV-EFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRML-------VG  212 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~av-D~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~-------~~  212 (264)
                      .+.+||=.|++ +.+..++++.+- ...+|+.+ +.++...+++.+.... ..++.++..|+++.......       .+
T Consensus         3 ~~k~vlVTGas-~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (258)
T 3oid_A            3 QNKCALVTGSS-RGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETFG   81 (258)
T ss_dssp             CCCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEecCC-chHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            45677766665 455555554442 33477776 7776554444443332 34899999999986532111       14


Q ss_pred             CccEEEEcCC
Q 024665          213 MVDVIFSDVA  222 (264)
Q Consensus       213 ~fD~V~~d~p  222 (264)
                      .+|+++.+..
T Consensus        82 ~id~lv~nAg   91 (258)
T 3oid_A           82 RLDVFVNNAA   91 (258)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6799998874

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=86.07  E-value=4.8  Score=34.49  Aligned_cols=81  Identities=19%  Similarity=0.114  Sum_probs=52.8

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhh--cCCCeEEE-EcCCCCchhhcccCCCccE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAK--KRTNVIPI-IEDARHPAKYRMLVGMVDV  216 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~--~~~nV~~i-~~D~~~~~~~~~~~~~fD~  216 (264)
                      ..++.+||=.|+ +|.+..++++.+- ...+|++++.++.....+.+...  ...+++++ ..|+++..........+|+
T Consensus         8 ~~~~~~vlVTGa-tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~   86 (342)
T 1y1p_A            8 LPEGSLVLVTGA-NGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAG   86 (342)
T ss_dssp             SCTTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSE
T ss_pred             CCCCCEEEEECC-ccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCE
Confidence            345678887765 5777777776543 23589999998644333322211  12478888 7999887654344457999


Q ss_pred             EEEcCC
Q 024665          217 IFSDVA  222 (264)
Q Consensus       217 V~~d~p  222 (264)
                      ||..+.
T Consensus        87 vih~A~   92 (342)
T 1y1p_A           87 VAHIAS   92 (342)
T ss_dssp             EEECCC
T ss_pred             EEEeCC
Confidence            998776

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=86.02  E-value=3.4  Score=34.94  Aligned_cols=79  Identities=14%  Similarity=0.143  Sum_probs=48.1

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeC-ChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhccc-------CC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEF-SHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRML-------VG  212 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~-s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~~-------~~  212 (264)
                      .+.+||=.|+++ .+..++++.+ ....+|+.++. ++...+++.+... ...++.++..|+.+.......       .+
T Consensus        27 ~~k~vlVTGas~-gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g  105 (269)
T 4dmm_A           27 TDRIALVTGASR-GIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIERWG  105 (269)
T ss_dssp             TTCEEEETTCSS-HHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            456777777654 4555554443 23458888888 4544444433332 234799999999986532111       13


Q ss_pred             CccEEEEcCC
Q 024665          213 MVDVIFSDVA  222 (264)
Q Consensus       213 ~fD~V~~d~p  222 (264)
                      .+|+++.++.
T Consensus       106 ~id~lv~nAg  115 (269)
T 4dmm_A          106 RLDVLVNNAG  115 (269)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7899998875

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=86.01  E-value=1.9  Score=36.72  Aligned_cols=79  Identities=13%  Similarity=0.132  Sum_probs=48.5

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHh-hcCCCeEEEEcCCCCchhhccc------CCCc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMA-KKRTNVIPIIEDARHPAKYRML------VGMV  214 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a-~~~~nV~~i~~D~~~~~~~~~~------~~~f  214 (264)
                      .+.+||=.|++. .+...+++.+ ....+|+.++.++...+++.+.. ....++.++..|+.+.......      .+.+
T Consensus        32 ~gk~~lVTGas~-GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~g~i  110 (275)
T 4imr_A           32 RGRTALVTGSSR-GIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAIAPV  110 (275)
T ss_dssp             TTCEEEETTCSS-HHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHhCCC
Confidence            466788777655 4444444433 23458999999854333333322 2235899999999886432111      1478


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+++.+..
T Consensus       111 D~lvnnAg  118 (275)
T 4imr_A          111 DILVINAS  118 (275)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99998876

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=86.00  E-value=5.7  Score=33.22  Aligned_cols=77  Identities=16%  Similarity=0.208  Sum_probs=48.0

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccC-------CCc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLV-------GMV  214 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~-------~~f  214 (264)
                      .+.+||=.|+.. .+..++++.+ ....+|+.++.++...+++.+...  .++.++..|+.+........       +.+
T Consensus         6 ~~k~vlVTGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   82 (260)
T 1nff_A            6 TGKVALVSGGAR-GMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA--DAARYVHLDVTQPAQWKAAVDTAVTAFGGL   82 (260)
T ss_dssp             TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG--GGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh--cCceEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            356788777655 4455554433 234589999999755444333221  25889999999865322111       378


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+|+.+..
T Consensus        83 D~lv~~Ag   90 (260)
T 1nff_A           83 HVLVNNAG   90 (260)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99998865

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=85.97  E-value=2.7  Score=35.33  Aligned_cols=79  Identities=14%  Similarity=0.154  Sum_probs=49.1

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhh-c--CCCeEEEEcCCCCchhhccc-------C
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAK-K--RTNVIPIIEDARHPAKYRML-------V  211 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~-~--~~nV~~i~~D~~~~~~~~~~-------~  211 (264)
                      .+.+||=.|+. +.+..++++.+ ....+|+.++.++...+++.+... .  ..++.++..|+.+.......       .
T Consensus        12 ~~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   90 (267)
T 1iy8_A           12 TDRVVLITGGG-SGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   90 (267)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45678888875 45555554443 234589999999655444333222 1  34799999999986532111       1


Q ss_pred             CCccEEEEcCC
Q 024665          212 GMVDVIFSDVA  222 (264)
Q Consensus       212 ~~fD~V~~d~p  222 (264)
                      +.+|+|+.+..
T Consensus        91 g~id~lv~nAg  101 (267)
T 1iy8_A           91 GRIDGFFNNAG  101 (267)
T ss_dssp             SCCSEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            36899998864

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=85.97  E-value=4.6  Score=35.02  Aligned_cols=79  Identities=19%  Similarity=0.310  Sum_probs=48.3

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCC------------hHHHHHHHHHhh-cCCCeEEEEcCCCCchhhc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFS------------HRSGRDLVNMAK-KRTNVIPIIEDARHPAKYR  208 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s------------~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~  208 (264)
                      .+.+||=.|++.|. ...++..+ ....+|+.+|.+            .+.+++..+... ...++.++..|+.+.....
T Consensus        45 ~gk~~lVTGas~GI-G~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~  123 (317)
T 3oec_A           45 QGKVAFITGAARGQ-GRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLASLQ  123 (317)
T ss_dssp             TTCEEEESSCSSHH-HHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred             CCCEEEEeCCCcHH-HHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHH
Confidence            46678877776554 44444333 234589999875            333333333322 2348999999999865321


Q ss_pred             cc-------CCCccEEEEcCC
Q 024665          209 ML-------VGMVDVIFSDVA  222 (264)
Q Consensus       209 ~~-------~~~fD~V~~d~p  222 (264)
                      ..       .+.+|++|.+..
T Consensus       124 ~~~~~~~~~~g~iD~lVnnAg  144 (317)
T 3oec_A          124 AVVDEALAEFGHIDILVSNVG  144 (317)
T ss_dssp             HHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHcCCCCEEEECCC
Confidence            11       147899998865

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=85.92  E-value=1.7  Score=38.90  Aligned_cols=43  Identities=23%  Similarity=0.268  Sum_probs=32.6

Q ss_pred             cccCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCEEEEEeCChHH
Q 024665          137 DNIWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRS  180 (264)
Q Consensus       137 ~~~~l~~g~~VLDlG~G~-G~~s~~la~~~~~~g~V~avD~s~~~  180 (264)
                      +...++++++||=+|+|+ |.+++.+|...+ ..+|+++|.+++-
T Consensus       176 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~  219 (370)
T 4ej6_A          176 DLSGIKAGSTVAILGGGVIGLLTVQLARLAG-ATTVILSTRQATK  219 (370)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHH
Confidence            344689999999999865 667777777754 3489999999754

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=85.85  E-value=1.9  Score=36.22  Aligned_cols=79  Identities=11%  Similarity=0.160  Sum_probs=50.2

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhccc-------CCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRML-------VGM  213 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~-------~~~  213 (264)
                      .+.+||=.|++. .+..++++.+ ....+|+.++.++..++++.+.... ..++.++..|+.+.......       .+.
T Consensus         5 ~~k~vlVTGas~-gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   83 (257)
T 3imf_A            5 KEKVVIITGGSS-GMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKFGR   83 (257)
T ss_dssp             TTCEEEETTTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            356777667654 4555554443 2345899999997665555444332 23799999999986532111       147


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      +|+++.++.
T Consensus        84 id~lv~nAg   92 (257)
T 3imf_A           84 IDILINNAA   92 (257)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            899998865

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=85.84  E-value=2.4  Score=36.09  Aligned_cols=78  Identities=13%  Similarity=0.105  Sum_probs=48.5

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhc-C-CCeEEEEcCCCCchhhccc-------CC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK-R-TNVIPIIEDARHPAKYRML-------VG  212 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~-~-~nV~~i~~D~~~~~~~~~~-------~~  212 (264)
                      .+.+||=.|+. |.+..++++.+ ....+|++++.++..++++.+.... . .++.++..|+++.......       .+
T Consensus        27 ~~k~vlITGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g  105 (286)
T 1xu9_A           27 QGKKVIVTGAS-KGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMG  105 (286)
T ss_dssp             TTCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            45678877755 55565555443 2345899999997554444333221 2 3689999999986432111       14


Q ss_pred             CccEEEEcC
Q 024665          213 MVDVIFSDV  221 (264)
Q Consensus       213 ~fD~V~~d~  221 (264)
                      .+|+|+.+.
T Consensus       106 ~iD~li~na  114 (286)
T 1xu9_A          106 GLDMLILNH  114 (286)
T ss_dssp             SCSEEEECC
T ss_pred             CCCEEEECC
Confidence            789999883

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=85.84  E-value=4.9  Score=33.77  Aligned_cols=79  Identities=18%  Similarity=0.160  Sum_probs=48.4

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCC-hHHHHHHHHHhhc-CCCeEEEEcCCCCchhhccc-------CC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFS-HRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRML-------VG  212 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s-~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~-------~~  212 (264)
                      .+.+||=.|+..| +..++++.+ ....+|+.++.+ +...+.+.+.... ..++.++..|+.+.......       .+
T Consensus        28 ~~k~vlITGas~g-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g  106 (271)
T 4iin_A           28 TGKNVLITGASKG-IGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQSDG  106 (271)
T ss_dssp             SCCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            4567887777655 444444433 234589999985 4443343333322 34799999999986532111       14


Q ss_pred             CccEEEEcCC
Q 024665          213 MVDVIFSDVA  222 (264)
Q Consensus       213 ~fD~V~~d~p  222 (264)
                      .+|+|+.++.
T Consensus       107 ~id~li~nAg  116 (271)
T 4iin_A          107 GLSYLVNNAG  116 (271)
T ss_dssp             SCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7899998866

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=85.84  E-value=4  Score=34.04  Aligned_cols=77  Identities=13%  Similarity=0.133  Sum_probs=47.9

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-------CCCc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGMV  214 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-------~~~f  214 (264)
                      .+.+||=.|+.. .+...+++.+ ....+|+.++.+++..+++.+..  ..++.++..|+.+.......       .+.+
T Consensus         4 ~~k~vlVTGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   80 (254)
T 1hdc_A            4 SGKTVIITGGAR-GLGAEAARQAVAAGARVVLADVLDEEGAATAREL--GDAARYQHLDVTIEEDWQRVVAYAREEFGSV   80 (254)
T ss_dssp             CCSEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT--GGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--CCceeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            356788787755 4444444433 23458999999975443333221  23688999999886532111       1378


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+|+.+..
T Consensus        81 D~lv~nAg   88 (254)
T 1hdc_A           81 DGLVNNAG   88 (254)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99998865

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=85.79  E-value=3  Score=34.08  Aligned_cols=73  Identities=15%  Similarity=0.228  Sum_probs=47.2

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcCCCe-EEEEcCCCCchhhcccCCCccEEEEc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNV-IPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~~nV-~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      .+++||=.|+ +|.+..++++.+- ...+|++++.++...+++..     .++ +++..|+++  ........+|+|+.+
T Consensus        20 ~~~~ilVtGa-tG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~-----~~~~~~~~~Dl~~--~~~~~~~~~D~vi~~   91 (236)
T 3e8x_A           20 QGMRVLVVGA-NGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE-----RGASDIVVANLEE--DFSHAFASIDAVVFA   91 (236)
T ss_dssp             -CCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH-----TTCSEEEECCTTS--CCGGGGTTCSEEEEC
T ss_pred             CCCeEEEECC-CChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh-----CCCceEEEcccHH--HHHHHHcCCCEEEEC
Confidence            4678887774 5666666665542 33589999999643322211     368 999999972  222234579999988


Q ss_pred             CCC
Q 024665          221 VAQ  223 (264)
Q Consensus       221 ~p~  223 (264)
                      ...
T Consensus        92 ag~   94 (236)
T 3e8x_A           92 AGS   94 (236)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            773

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=85.74  E-value=1.2  Score=39.80  Aligned_cols=41  Identities=22%  Similarity=0.268  Sum_probs=31.5

Q ss_pred             ccCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCEEEEEeCChHH
Q 024665          138 NIWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRS  180 (264)
Q Consensus       138 ~~~l~~g~~VLDlG~G~-G~~s~~la~~~~~~g~V~avD~s~~~  180 (264)
                      ...++++++||-+|+|+ |.+++.+|...+  .+|+++|.+++-
T Consensus       189 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~G--a~Vi~~~~~~~~  230 (369)
T 1uuf_A          189 HWQAGPGKKVGVVGIGGLGHMGIKLAHAMG--AHVVAFTTSEAK  230 (369)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSGGG
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHH
Confidence            34689999999999864 667777777754  479999988543

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=85.65  E-value=5.3  Score=32.97  Aligned_cols=78  Identities=17%  Similarity=0.222  Sum_probs=47.7

Q ss_pred             CCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeC-ChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhccc-------CCC
Q 024665          144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEF-SHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRML-------VGM  213 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~-s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~~-------~~~  213 (264)
                      +.+||=.|+ ++.+...+++.+- ...+|+.++. ++...+++.+... ...++.++..|+.+.......       .+.
T Consensus         4 ~k~vlVTGa-s~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   82 (246)
T 2uvd_A            4 GKVALVTGA-SRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDVFGQ   82 (246)
T ss_dssp             TCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            456776665 4555665555442 3458999998 6544444333322 234789999999986532111       137


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      +|+++.+..
T Consensus        83 id~lv~nAg   91 (246)
T 2uvd_A           83 VDILVNNAG   91 (246)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            899998865

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=85.58  E-value=7.5  Score=32.68  Aligned_cols=79  Identities=11%  Similarity=0.110  Sum_probs=48.9

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHh--hcCCCeEEEEcCCCCchhhccc-------CC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMA--KKRTNVIPIIEDARHPAKYRML-------VG  212 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a--~~~~nV~~i~~D~~~~~~~~~~-------~~  212 (264)
                      .+.+||=.|+. +.+..++++.+- ...+|+.++.++..++++.+..  ....++.++..|+.+.......       .+
T Consensus        20 ~~k~~lVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   98 (267)
T 1vl8_A           20 RGRVALVTGGS-RGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFG   98 (267)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            45678877765 455555554432 3458999999965444433322  1234789999999986532111       13


Q ss_pred             CccEEEEcCC
Q 024665          213 MVDVIFSDVA  222 (264)
Q Consensus       213 ~fD~V~~d~p  222 (264)
                      .+|+|+.+..
T Consensus        99 ~iD~lvnnAg  108 (267)
T 1vl8_A           99 KLDTVVNAAG  108 (267)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6899998865

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=85.46  E-value=7.1  Score=32.05  Aligned_cols=77  Identities=12%  Similarity=0.113  Sum_probs=48.7

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcCCCe-EEEEcCCCCchhhccc------CCCc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNV-IPIIEDARHPAKYRML------VGMV  214 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~~nV-~~i~~D~~~~~~~~~~------~~~f  214 (264)
                      .+.+||=.|+. |.+..++++.+- ...+|++++.++...+++.+..  ..++ .++..|+.+.......      ...+
T Consensus        10 ~~k~vlITGas-ggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~i   86 (254)
T 2wsb_A           10 DGACAAVTGAG-SGIGLEICRAFAASGARLILIDREAAALDRAAQEL--GAAVAARIVADVTDAEAMTAAAAEAEAVAPV   86 (254)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--GGGEEEEEECCTTCHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--cccceeEEEEecCCHHHHHHHHHHHHhhCCC
Confidence            45678877765 556666555442 3458999999965443433322  2356 8899999986532211      1478


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+|+.+..
T Consensus        87 d~li~~Ag   94 (254)
T 2wsb_A           87 SILVNSAG   94 (254)
T ss_dssp             CEEEECCC
T ss_pred             cEEEECCc
Confidence            99998865

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=85.38  E-value=4.4  Score=34.37  Aligned_cols=77  Identities=19%  Similarity=0.196  Sum_probs=48.5

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-------CCCc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGMV  214 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-------~~~f  214 (264)
                      .+.+||=.|++. .+...+++.+ ....+|+.++.++..++++.+..  ..++.++..|+++.......       .+.+
T Consensus        27 ~~k~~lVTGas~-GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  103 (272)
T 4dyv_A           27 GKKIAIVTGAGS-GVGRAVAVALAGAGYGVALAGRRLDALQETAAEI--GDDALCVPTDVTDPDSVRALFTATVEKFGRV  103 (272)
T ss_dssp             -CCEEEETTTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--TSCCEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh--CCCeEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            455677666654 4455554433 23458999999976554444433  35789999999986532111       1378


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+++.++.
T Consensus       104 D~lVnnAg  111 (272)
T 4dyv_A          104 DVLFNNAG  111 (272)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99998865

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=85.32  E-value=5.5  Score=33.59  Aligned_cols=77  Identities=12%  Similarity=0.198  Sum_probs=49.8

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-------CCCc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGMV  214 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-------~~~f  214 (264)
                      .+.+||=.|++.| +..++++.+ ....+|+.++.++..++++.+..  ..++.++..|+++.......       .+.+
T Consensus        26 ~gk~vlVTGas~g-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  102 (266)
T 3grp_A           26 TGRKALVTGATGG-IGEAIARCFHAQGAIVGLHGTREDKLKEIAADL--GKDVFVFSANLSDRKSIKQLAEVAEREMEGI  102 (266)
T ss_dssp             TTCEEEESSTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--CSSEEEEECCTTSHHHHHHHHHHHHHHHTSC
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--CCceEEEEeecCCHHHHHHHHHHHHHHcCCC
Confidence            4667887776654 455554443 23458999999976554544322  34799999999986532111       1478


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+++.++.
T Consensus       103 D~lvnnAg  110 (266)
T 3grp_A          103 DILVNNAG  110 (266)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99998876

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=85.30  E-value=3.6  Score=34.30  Aligned_cols=75  Identities=17%  Similarity=0.270  Sum_probs=47.1

Q ss_pred             CEEEEEcccCChHHHHHHHHh---CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-------CCCc
Q 024665          145 ARVLYLGAASGTTVSHVSDIV---GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGMV  214 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~---~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-------~~~f  214 (264)
                      .+||=.|++ +.+..++++.+   +....|+.++.++..++++.+..  ..++.++..|+++.......       .+.+
T Consensus         3 k~~lVTGas-~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   79 (254)
T 3kzv_A            3 KVILVTGVS-RGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKY--GDRFFYVVGDITEDSVLKQLVNAAVKGHGKI   79 (254)
T ss_dssp             CEEEECSTT-SHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHH--GGGEEEEESCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CEEEEECCC-chHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHh--CCceEEEECCCCCHHHHHHHHHHHHHhcCCc
Confidence            456666655 44555555443   22358999999976555544433  24789999999986532111       2478


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+++.+..
T Consensus        80 d~lvnnAg   87 (254)
T 3kzv_A           80 DSLVANAG   87 (254)
T ss_dssp             CEEEEECC
T ss_pred             cEEEECCc
Confidence            99998865

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=85.29  E-value=6.1  Score=33.44  Aligned_cols=74  Identities=16%  Similarity=0.289  Sum_probs=47.5

Q ss_pred             CEEEEEcccCChHHHHHHHH-hCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc-------cCCCccE
Q 024665          145 ARVLYLGAASGTTVSHVSDI-VGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMVDV  216 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~-~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~-------~~~~fD~  216 (264)
                      .+||=-|+++|. ...+|.. .....+|+.+|.+++.++   +.+....++.+++.|+++......       ..+..|+
T Consensus         3 K~vlVTGas~GI-G~aia~~la~~Ga~V~~~~~~~~~~~---~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~iDi   78 (247)
T 3ged_A            3 RGVIVTGGGHGI-GKQICLDFLEAGDKVCFIDIDEKRSA---DFAKERPNLFYFHGDVADPLTLKKFVEYAMEKLQRIDV   78 (247)
T ss_dssp             CEEEEESTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHH---HHHTTCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CEEEEecCCCHH-HHHHHHHHHHCCCEEEEEeCCHHHHH---HHHHhcCCEEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            467777777765 3333322 223568999999975433   334445689999999998653211       1257899


Q ss_pred             EEEcCC
Q 024665          217 IFSDVA  222 (264)
Q Consensus       217 V~~d~p  222 (264)
                      ++.|..
T Consensus        79 LVNNAG   84 (247)
T 3ged_A           79 LVNNAC   84 (247)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            998875

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=85.28  E-value=4  Score=34.03  Aligned_cols=77  Identities=16%  Similarity=0.133  Sum_probs=48.9

Q ss_pred             CCCEEEEEcccCCh---HHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---C-CCeEEEEcCCCCchhhccc-----
Q 024665          143 PGARVLYLGAASGT---TVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---R-TNVIPIIEDARHPAKYRML-----  210 (264)
Q Consensus       143 ~g~~VLDlG~G~G~---~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~-~nV~~i~~D~~~~~~~~~~-----  210 (264)
                      .+.+||=.|++.|.   ++..|++.   ..+|+.++.++..++++.+....   . .++.++..|+++.......     
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~---G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   82 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATD---GYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIH   82 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHH---TCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHH
Confidence            45678888877654   33344433   35899999996554444433221   2 5789999999986532111     


Q ss_pred             --CCCccEEEEcCC
Q 024665          211 --VGMVDVIFSDVA  222 (264)
Q Consensus       211 --~~~fD~V~~d~p  222 (264)
                        .+.+|+++.++.
T Consensus        83 ~~~g~iD~lvnnAg   96 (250)
T 3nyw_A           83 QKYGAVDILVNAAA   96 (250)
T ss_dssp             HHHCCEEEEEECCC
T ss_pred             HhcCCCCEEEECCC
Confidence              247899998875

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=85.26  E-value=2.3  Score=34.89  Aligned_cols=79  Identities=9%  Similarity=0.097  Sum_probs=49.7

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhh--cCCCeEEEEcCCCCchhhccc-------CC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAK--KRTNVIPIIEDARHPAKYRML-------VG  212 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~--~~~nV~~i~~D~~~~~~~~~~-------~~  212 (264)
                      .+.+||=.|+ +|.+..++++.+- ...+|+.++.++...+++.+...  ...++.++..|+.+.......       .+
T Consensus         6 ~~~~vlVtGa-sggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   84 (248)
T 2pnf_A            6 QGKVSLVTGS-TRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNLVD   84 (248)
T ss_dssp             TTCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            3566776665 5666666665442 34589999999655444333221  234799999999886532111       23


Q ss_pred             CccEEEEcCC
Q 024665          213 MVDVIFSDVA  222 (264)
Q Consensus       213 ~fD~V~~d~p  222 (264)
                      .+|+|+.+..
T Consensus        85 ~~d~vi~~Ag   94 (248)
T 2pnf_A           85 GIDILVNNAG   94 (248)
T ss_dssp             CCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7899998865

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=85.23  E-value=2.4  Score=36.22  Aligned_cols=79  Identities=13%  Similarity=0.145  Sum_probs=50.7

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhc------CCCeEEEEcCCCCchhhccc-----
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKK------RTNVIPIIEDARHPAKYRML-----  210 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~------~~nV~~i~~D~~~~~~~~~~-----  210 (264)
                      .+.+||=.|+ +|.+..+++..+- ...+|+.++.++...+++.+....      ..++.++..|+.+.......     
T Consensus        17 ~~k~vlVTGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   95 (303)
T 1yxm_A           17 QGQVAIVTGG-ATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTL   95 (303)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHHH
Confidence            4568887776 5666666665442 345899999996554443333221      34799999999986532111     


Q ss_pred             --CCCccEEEEcCC
Q 024665          211 --VGMVDVIFSDVA  222 (264)
Q Consensus       211 --~~~fD~V~~d~p  222 (264)
                        .+.+|+|+.++.
T Consensus        96 ~~~g~id~li~~Ag  109 (303)
T 1yxm_A           96 DTFGKINFLVNNGG  109 (303)
T ss_dssp             HHHSCCCEEEECCC
T ss_pred             HHcCCCCEEEECCC
Confidence              136899998865

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=85.16  E-value=2.9  Score=35.24  Aligned_cols=79  Identities=20%  Similarity=0.233  Sum_probs=47.4

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCC-hHHHHHHHHHhh-cCCCeEEEEcCCCCchhhccc-------CC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFS-HRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRML-------VG  212 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s-~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~~-------~~  212 (264)
                      .+.+||=.|++.| +..++++.+ ....+|+.++.+ .+..+++.+... ...++.++..|+++.......       .+
T Consensus        17 ~~k~~lVTGas~g-IG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   95 (270)
T 3is3_A           17 DGKVALVTGSGRG-IGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHFG   95 (270)
T ss_dssp             TTCEEEESCTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4667887776654 444444433 234578887765 443333333332 234799999999986532111       14


Q ss_pred             CccEEEEcCC
Q 024665          213 MVDVIFSDVA  222 (264)
Q Consensus       213 ~fD~V~~d~p  222 (264)
                      .+|+++.+..
T Consensus        96 ~id~lvnnAg  105 (270)
T 3is3_A           96 HLDIAVSNSG  105 (270)
T ss_dssp             CCCEEECCCC
T ss_pred             CCCEEEECCC
Confidence            7899998765

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=85.10  E-value=3.1  Score=35.33  Aligned_cols=79  Identities=16%  Similarity=0.152  Sum_probs=49.6

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhccc-------CCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRML-------VGM  213 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~~-------~~~  213 (264)
                      .+.+||=.|+. |.+...+++.+- ...+|+.++.++..++++.+... ...++.++..|+++.......       .+.
T Consensus        21 ~~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   99 (277)
T 2rhc_B           21 DSEVALVTGAT-SGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGP   99 (277)
T ss_dssp             TSCEEEEETCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            45678888875 455555554432 34589999999655444333322 234789999999986532111       247


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      +|+|+.+..
T Consensus       100 iD~lv~~Ag  108 (277)
T 2rhc_B          100 VDVLVNNAG  108 (277)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            899998865

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=85.01  E-value=6.3  Score=33.19  Aligned_cols=79  Identities=19%  Similarity=0.312  Sum_probs=48.7

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeC-------------ChHHHHHHHHHhh-cCCCeEEEEcCCCCchhh
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEF-------------SHRSGRDLVNMAK-KRTNVIPIIEDARHPAKY  207 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~-------------s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~  207 (264)
                      .+.+||=.|+++|. ..++++.+ ....+|+.+|.             +...+++..+... ...++.++..|+.+....
T Consensus        10 ~~k~~lVTGas~GI-G~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v   88 (277)
T 3tsc_A           10 EGRVAFITGAARGQ-GRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFDRL   88 (277)
T ss_dssp             TTCEEEEESTTSHH-HHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred             CCCEEEEECCccHH-HHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHH
Confidence            46788888877654 33333332 23458999998             4444334333322 234799999999986532


Q ss_pred             ccc-------CCCccEEEEcCC
Q 024665          208 RML-------VGMVDVIFSDVA  222 (264)
Q Consensus       208 ~~~-------~~~fD~V~~d~p  222 (264)
                      ...       .+.+|+++.+..
T Consensus        89 ~~~~~~~~~~~g~id~lvnnAg  110 (277)
T 3tsc_A           89 RKVVDDGVAALGRLDIIVANAG  110 (277)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCC
Confidence            111       146899998875

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=85.01  E-value=3  Score=34.39  Aligned_cols=79  Identities=16%  Similarity=0.171  Sum_probs=48.6

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCC-hHHHHHHHHHhh-cCCCeEEEEcCCCCchhhcccC-------C
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFS-HRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRMLV-------G  212 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s-~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~~~-------~  212 (264)
                      .+.+||=.|+ +|.+..++++.+- ...+|+.++.+ +..++++.+... ...+++++..|+.+........       +
T Consensus         6 ~~k~vlVTGa-sggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   84 (258)
T 3afn_B            6 KGKRVLITGS-SQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFVAKFG   84 (258)
T ss_dssp             TTCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCC-CChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            3567775555 5666666665543 34589999987 433333333222 2347899999999865322111       3


Q ss_pred             CccEEEEcCC
Q 024665          213 MVDVIFSDVA  222 (264)
Q Consensus       213 ~fD~V~~d~p  222 (264)
                      .+|+|+.++.
T Consensus        85 ~id~vi~~Ag   94 (258)
T 3afn_B           85 GIDVLINNAG   94 (258)
T ss_dssp             SCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7899998765

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=85.00  E-value=3.3  Score=34.67  Aligned_cols=79  Identities=10%  Similarity=0.115  Sum_probs=49.3

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhccc-------CCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRML-------VGM  213 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~-------~~~  213 (264)
                      .+.+||=.|+..| +...+++.+ ....+|+.++.++..++++.+.... ..++.++..|+.+.......       .+.
T Consensus         6 ~~k~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   84 (262)
T 1zem_A            6 NGKVCLVTGAGGN-IGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGK   84 (262)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            4567887777554 555554443 2345899999996554444333322 23789999999986532111       147


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      +|+|+.+..
T Consensus        85 id~lv~nAg   93 (262)
T 1zem_A           85 IDFLFNNAG   93 (262)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            899998764

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=84.80  E-value=5  Score=33.68  Aligned_cols=79  Identities=11%  Similarity=0.081  Sum_probs=47.6

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCC-hHHHHHHHHHhh-cCCCeEEEEcCCCCchhhccc-------CC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFS-HRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRML-------VG  212 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s-~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~~-------~~  212 (264)
                      .+.+||=.|+. +.+...+++.+ ....+|+.++.. ....+...+... ...++.++..|+.+.......       .+
T Consensus        24 ~~k~vlITGas-~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  102 (269)
T 3gk3_A           24 AKRVAFVTGGM-GGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLADFG  102 (269)
T ss_dssp             CCCEEEETTTT-SHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            45567766654 55566555544 334589999844 444333333322 234799999999986532111       13


Q ss_pred             CccEEEEcCC
Q 024665          213 MVDVIFSDVA  222 (264)
Q Consensus       213 ~fD~V~~d~p  222 (264)
                      .+|+|+.++.
T Consensus       103 ~id~li~nAg  112 (269)
T 3gk3_A          103 KVDVLINNAG  112 (269)
T ss_dssp             CCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7899998865

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=84.77  E-value=5  Score=33.39  Aligned_cols=78  Identities=12%  Similarity=0.221  Sum_probs=46.5

Q ss_pred             CCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHH--HHHHHHHhhc-CCCeEEEEcCCCCchhhccc-------CC
Q 024665          144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRS--GRDLVNMAKK-RTNVIPIIEDARHPAKYRML-------VG  212 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~--~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~-------~~  212 (264)
                      +.+||=.|+..| +...+++.+- ...+|+.++.++..  ++++.+.... ..++.++..|+.+.......       .+
T Consensus         2 ~k~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   80 (258)
T 3a28_C            2 SKVAMVTGGAQG-IGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKLG   80 (258)
T ss_dssp             CCEEEEETTTSH-HHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            356777776654 4444443321 23589999988543  3333333222 34799999999986532111       13


Q ss_pred             CccEEEEcCC
Q 024665          213 MVDVIFSDVA  222 (264)
Q Consensus       213 ~fD~V~~d~p  222 (264)
                      .+|+++.+..
T Consensus        81 ~iD~lv~nAg   90 (258)
T 3a28_C           81 GFDVLVNNAG   90 (258)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7899998865

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=84.76  E-value=3.5  Score=38.26  Aligned_cols=72  Identities=15%  Similarity=0.193  Sum_probs=50.4

Q ss_pred             CEEEEEcccCChHHHHHHHHhCCCC-EEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc-cCCCccEEEEcCC
Q 024665          145 ARVLYLGAASGTTVSHVSDIVGPNG-VVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-LVGMVDVIFSDVA  222 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~~~~g-~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~-~~~~fD~V~~d~p  222 (264)
                      ++|+=+||  |....++|+.+...+ .|+.||.+++.++++.    ....+.++++|++++..... -.+.+|++++-..
T Consensus         4 M~iiI~G~--G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~----~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~   77 (461)
T 4g65_A            4 MKIIILGA--GQVGGTLAENLVGENNDITIVDKDGDRLRELQ----DKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTN   77 (461)
T ss_dssp             EEEEEECC--SHHHHHHHHHTCSTTEEEEEEESCHHHHHHHH----HHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCS
T ss_pred             CEEEEECC--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH----HhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcC
Confidence            45665554  789999998886554 6999999986644332    22368899999999764322 2468999987444

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=84.65  E-value=4.1  Score=33.75  Aligned_cols=79  Identities=22%  Similarity=0.206  Sum_probs=46.7

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhc--------CCCeEEEEcCCCCchhhccc---
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK--------RTNVIPIIEDARHPAKYRML---  210 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~--------~~nV~~i~~D~~~~~~~~~~---  210 (264)
                      .+.+||=.|+. |.+..++++.+ ....+|+.++.++...+++.+....        ..++.++..|+.+.......   
T Consensus         6 ~~k~vlITGas-ggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   84 (264)
T 2pd6_A            6 RSALALVTGAG-SGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLEQ   84 (264)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHHH
Confidence            35678877765 45555555443 2345899999996554443322111        14689999999986532111   


Q ss_pred             ----CCCc-cEEEEcCC
Q 024665          211 ----VGMV-DVIFSDVA  222 (264)
Q Consensus       211 ----~~~f-D~V~~d~p  222 (264)
                          .+.+ |+|+.+..
T Consensus        85 ~~~~~g~i~d~vi~~Ag  101 (264)
T 2pd6_A           85 VQACFSRPPSVVVSCAG  101 (264)
T ss_dssp             HHHHHSSCCSEEEECCC
T ss_pred             HHHHhCCCCeEEEECCC
Confidence                1234 99998765

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=84.63  E-value=8  Score=33.10  Aligned_cols=79  Identities=16%  Similarity=0.214  Sum_probs=49.0

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCC------------hHHHHHHHHHh-hcCCCeEEEEcCCCCchhhc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFS------------HRSGRDLVNMA-KKRTNVIPIIEDARHPAKYR  208 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s------------~~~~~~l~~~a-~~~~nV~~i~~D~~~~~~~~  208 (264)
                      .+.+||=.|+++|. ...++..+ ....+|+.+|.+            ++.+++..+.. ....++.++..|+++.....
T Consensus        27 ~gk~~lVTGas~GI-G~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~  105 (299)
T 3t7c_A           27 EGKVAFITGAARGQ-GRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAMQ  105 (299)
T ss_dssp             TTCEEEEESTTSHH-HHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred             CCCEEEEECCCCHH-HHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHH
Confidence            46788888887664 44433332 234689999976            43333333322 23358999999999865321


Q ss_pred             cc-------CCCccEEEEcCC
Q 024665          209 ML-------VGMVDVIFSDVA  222 (264)
Q Consensus       209 ~~-------~~~fD~V~~d~p  222 (264)
                      ..       .+.+|+++.+..
T Consensus       106 ~~~~~~~~~~g~iD~lv~nAg  126 (299)
T 3t7c_A          106 AAVDDGVTQLGRLDIVLANAA  126 (299)
T ss_dssp             HHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHhCCCCEEEECCC
Confidence            11       147899998865

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=84.63  E-value=4  Score=33.96  Aligned_cols=77  Identities=16%  Similarity=0.269  Sum_probs=49.1

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-------CCCc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGMV  214 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-------~~~f  214 (264)
                      .+.+||=.|++.| +..++++.+ ....+|+.++.++...+++.+...  .++.++..|+++.......       .+.+
T Consensus         8 ~gk~~lVTGas~g-IG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   84 (248)
T 3op4_A            8 EGKVALVTGASRG-IGKAIAELLAERGAKVIGTATSESGAQAISDYLG--DNGKGMALNVTNPESIEAVLKAITDEFGGV   84 (248)
T ss_dssp             TTCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG--GGEEEEECCTTCHHHHHHHHHHHHHHHCCC
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--ccceEEEEeCCCHHHHHHHHHHHHHHcCCC
Confidence            4667887776654 454444433 234589999999765544444332  3578999999986532111       1478


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+++.+..
T Consensus        85 D~lv~nAg   92 (248)
T 3op4_A           85 DILVNNAG   92 (248)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99998865

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=84.62  E-value=3  Score=34.50  Aligned_cols=79  Identities=14%  Similarity=0.108  Sum_probs=51.4

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc---cCCCccE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM---LVGMVDV  216 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~---~~~~fD~  216 (264)
                      ..++.+||=.|+.. .+..++++.+ ....+|+.++.++..++++.+..  ..++.++..|+.+......   ....+|+
T Consensus        11 ~~~~k~vlVTGas~-gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~id~   87 (249)
T 3f9i_A           11 DLTGKTSLITGASS-GIGSAIARLLHKLGSKVIISGSNEEKLKSLGNAL--KDNYTIEVCNLANKEECSNLISKTSNLDI   87 (249)
T ss_dssp             CCTTCEEEETTTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--CSSEEEEECCTTSHHHHHHHHHTCSCCSE
T ss_pred             cCCCCEEEEECCCC-hHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh--ccCccEEEcCCCCHHHHHHHHHhcCCCCE
Confidence            44677888777654 4555555443 23458999999976554444332  3478999999988653211   1247899


Q ss_pred             EEEcCC
Q 024665          217 IFSDVA  222 (264)
Q Consensus       217 V~~d~p  222 (264)
                      |+.++.
T Consensus        88 li~~Ag   93 (249)
T 3f9i_A           88 LVCNAG   93 (249)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            998876

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=84.56  E-value=3.9  Score=33.88  Aligned_cols=78  Identities=15%  Similarity=0.192  Sum_probs=48.6

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCC--EEEEEeCCh--HHHHHHHHHhhcCCCeEEEEcCCCCc-hhhccc-------
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNG--VVYAVEFSH--RSGRDLVNMAKKRTNVIPIIEDARHP-AKYRML-------  210 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g--~V~avD~s~--~~~~~l~~~a~~~~nV~~i~~D~~~~-~~~~~~-------  210 (264)
                      .+.+||=.|+ +|.+..++++.+-..+  .|+.++.++  ..++++.+... ..+++++..|+.+. ......       
T Consensus         4 ~~k~vlVtGa-s~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~   81 (254)
T 1sby_A            4 TNKNVIFVAA-LGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINP-KVNITFHTYDVTVPVAESKKLLKKIFDQ   81 (254)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCT-TSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECC-CChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhCC-CceEEEEEEecCCChHHHHHHHHHHHHh
Confidence            3567888876 5677777776654333  488899874  33333322211 23689999999986 321111       


Q ss_pred             CCCccEEEEcCC
Q 024665          211 VGMVDVIFSDVA  222 (264)
Q Consensus       211 ~~~fD~V~~d~p  222 (264)
                      .+.+|+|+.+..
T Consensus        82 ~g~id~lv~~Ag   93 (254)
T 1sby_A           82 LKTVDILINGAG   93 (254)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCCCEEEECCc
Confidence            137899998876

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=84.55  E-value=1.7  Score=37.37  Aligned_cols=79  Identities=14%  Similarity=0.126  Sum_probs=47.0

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDV  221 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~  221 (264)
                      ++.+||=+|++.|. +..++..+ ....+|+.++.++.-++++.+......++.++..|+.+..........+|+|+.+.
T Consensus       118 ~gk~vlVtGaaGGi-G~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~DvlVn~a  196 (287)
T 1lu9_A          118 KGKKAVVLAGTGPV-GMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFTAG  196 (287)
T ss_dssp             TTCEEEEETCSSHH-HHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEECC
T ss_pred             CCCEEEEECCCcHH-HHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHhCCEEEECC
Confidence            57789988865544 33333322 22347999999864444443322111246677788877543323345689999887


Q ss_pred             C
Q 024665          222 A  222 (264)
Q Consensus       222 p  222 (264)
                      +
T Consensus       197 g  197 (287)
T 1lu9_A          197 A  197 (287)
T ss_dssp             C
T ss_pred             C
Confidence            6

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=84.55  E-value=2.8  Score=34.97  Aligned_cols=77  Identities=16%  Similarity=0.259  Sum_probs=48.2

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-------CCCc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGMV  214 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-------~~~f  214 (264)
                      .+.+||=.|+. |.+..++++.+- ...+|+.++.++...+++.+..  ..++.++..|+.+.......       .+.+
T Consensus         5 ~~k~vlVTGas-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   81 (253)
T 1hxh_A            5 QGKVALVTGGA-SGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL--GERSMFVRHDVSSEADWTLVMAAVQRRLGTL   81 (253)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH--CTTEEEECCCTTCHHHHHHHHHHHHHHHCSC
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc--CCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            35567766655 555555554442 3458999999965544433322  34789999999986532111       1367


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+|+.+..
T Consensus        82 d~lv~~Ag   89 (253)
T 1hxh_A           82 NVLVNNAG   89 (253)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99998865

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=84.54  E-value=4.9  Score=33.90  Aligned_cols=76  Identities=16%  Similarity=0.240  Sum_probs=47.7

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-------CCCc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGMV  214 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-------~~~f  214 (264)
                      .+.+||=.|+.. .+..++++.+ ....+|+.++.++...+++.+.   ..++.++..|+.+.......       .+.+
T Consensus         8 ~~k~vlVTGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   83 (270)
T 1yde_A            8 AGKVVVVTGGGR-GIGAGIVRAFVNSGARVVICDKDESGGRALEQE---LPGAVFILCDVTQEDDVKTLVSETIRRFGRL   83 (270)
T ss_dssp             TTCEEEEETCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---CTTEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---hcCCeEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            456788777665 4455444433 2345899999997544333322   23588999999986532111       1368


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+++.+..
T Consensus        84 D~lv~nAg   91 (270)
T 1yde_A           84 DCVVNNAG   91 (270)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99998864

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=84.49  E-value=3.4  Score=35.28  Aligned_cols=79  Identities=16%  Similarity=0.171  Sum_probs=50.3

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhccc-------CCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRML-------VGM  213 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~-------~~~  213 (264)
                      .+.+||=.|++.| +...+++.+ ....+|+.++.++..++++.+.... ..++.++..|+++.......       .+.
T Consensus         7 ~gk~vlVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   85 (280)
T 3tox_A            7 EGKIAIVTGASSG-IGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFGG   85 (280)
T ss_dssp             TTCEEEESSTTSH-HHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            4567887777655 444444333 2345899999997665555444332 34799999999986532111       147


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      +|+++.++.
T Consensus        86 iD~lvnnAg   94 (280)
T 3tox_A           86 LDTAFNNAG   94 (280)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            899998865

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=84.46  E-value=3.9  Score=34.78  Aligned_cols=79  Identities=9%  Similarity=0.087  Sum_probs=48.9

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeC-ChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhccc-------CC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEF-SHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRML-------VG  212 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~-s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~~-------~~  212 (264)
                      .+.+||=.|++.|. ..++++.+ ....+|+.++. +++..+++.+... ...++.+++.|+++.......       .+
T Consensus        28 ~~k~~lVTGas~GI-G~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  106 (280)
T 4da9_A           28 ARPVAIVTGGRRGI-GLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEFG  106 (280)
T ss_dssp             CCCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHHHS
T ss_pred             CCCEEEEecCCCHH-HHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            46678888876654 44444333 23458999996 5544434333332 234899999999987532111       13


Q ss_pred             CccEEEEcCC
Q 024665          213 MVDVIFSDVA  222 (264)
Q Consensus       213 ~fD~V~~d~p  222 (264)
                      .+|+++.++.
T Consensus       107 ~iD~lvnnAg  116 (280)
T 4da9_A          107 RIDCLVNNAG  116 (280)
T ss_dssp             CCCEEEEECC
T ss_pred             CCCEEEECCC
Confidence            7899998875

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=84.33  E-value=9.6  Score=31.01  Aligned_cols=76  Identities=20%  Similarity=0.205  Sum_probs=48.6

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc---CCCccEEE
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML---VGMVDVIF  218 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~---~~~fD~V~  218 (264)
                      .+.+||=.|+ +|.+..++++.+ ....+|+.++.++...+++.+.   ..+++++..|+.+.......   .+.+|+|+
T Consensus         6 ~~~~vlVTGa-sggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi   81 (244)
T 1cyd_A            6 SGLRALVTGA-GKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKE---CPGIEPVCVDLGDWDATEKALGGIGPVDLLV   81 (244)
T ss_dssp             TTCEEEEEST-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---STTCEEEECCTTCHHHHHHHHTTCCCCSEEE
T ss_pred             CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh---ccCCCcEEecCCCHHHHHHHHHHcCCCCEEE
Confidence            4567887776 466666665544 2345899999996544333322   24678889999986533222   23689999


Q ss_pred             EcCC
Q 024665          219 SDVA  222 (264)
Q Consensus       219 ~d~p  222 (264)
                      .+..
T Consensus        82 ~~Ag   85 (244)
T 1cyd_A           82 NNAA   85 (244)
T ss_dssp             ECCC
T ss_pred             ECCc
Confidence            8865

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=84.24  E-value=5.6  Score=33.16  Aligned_cols=78  Identities=12%  Similarity=0.061  Sum_probs=48.1

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhccc-------C
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRML-------V  211 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~-------~  211 (264)
                      .+.+||=.|+.. .+..++++.+ ....+|+.++.++...+++.+....   ..++.++..|+.+.......       .
T Consensus         6 ~~k~vlVTGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (260)
T 2z1n_A            6 QGKLAVVTAGSS-GLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDLG   84 (260)
T ss_dssp             TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            356788777664 4555554443 2345899999996544443332221   22789999999986532111       1


Q ss_pred             CCccEEEEcCC
Q 024665          212 GMVDVIFSDVA  222 (264)
Q Consensus       212 ~~fD~V~~d~p  222 (264)
                      + +|+|+.+..
T Consensus        85 g-id~lv~~Ag   94 (260)
T 2z1n_A           85 G-ADILVYSTG   94 (260)
T ss_dssp             C-CSEEEECCC
T ss_pred             C-CCEEEECCC
Confidence            4 899998865

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=84.20  E-value=1.6  Score=35.28  Aligned_cols=70  Identities=14%  Similarity=0.172  Sum_probs=50.8

Q ss_pred             EEEEEcccCChHHHHHHHHhCCC-CEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCC-chhhcccCCCccEEEEcCCC
Q 024665          146 RVLYLGAASGTTVSHVSDIVGPN-GVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARH-PAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       146 ~VLDlG~G~G~~s~~la~~~~~~-g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~-~~~~~~~~~~fD~V~~d~p~  223 (264)
                      +||=.| ++|.+..++++.+-.. .+|++++.++...       ....+++++..|+.+ ..........+|+|+.....
T Consensus         2 ~ilItG-atG~iG~~l~~~L~~~g~~V~~~~R~~~~~-------~~~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~   73 (219)
T 3dqp_A            2 KIFIVG-STGRVGKSLLKSLSTTDYQIYAGARKVEQV-------PQYNNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGS   73 (219)
T ss_dssp             EEEEES-TTSHHHHHHHHHHTTSSCEEEEEESSGGGS-------CCCTTEEEEECCTTSCHHHHHTTTTTCSEEEECCCC
T ss_pred             eEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCccch-------hhcCCceEEEecccCCHHHHHHHHcCCCEEEECCcC
Confidence            566555 5788888888777544 4899999986321       112589999999999 65544455689999988763

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=84.14  E-value=5.2  Score=33.10  Aligned_cols=78  Identities=14%  Similarity=0.157  Sum_probs=46.2

Q ss_pred             CCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCC-hHHHHHHHHHhh-cCCCeEEEEcCCCCchhhccc-------CCC
Q 024665          144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFS-HRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRML-------VGM  213 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s-~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~~-------~~~  213 (264)
                      +.+||=.|++ +.+..++++.+- ...+|+.++.. +...+++.+... ...++.++..|+++.......       .+.
T Consensus         4 ~k~~lVTGas-~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   82 (246)
T 3osu_A            4 TKSALVTGAS-RGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGS   82 (246)
T ss_dssp             SCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            4456655554 555555554432 34578888874 343333333332 234799999999986532111       137


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      +|+++.+..
T Consensus        83 id~lv~nAg   91 (246)
T 3osu_A           83 LDVLVNNAG   91 (246)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            899998866

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=84.05  E-value=2.9  Score=35.47  Aligned_cols=79  Identities=15%  Similarity=0.150  Sum_probs=49.6

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCc-hhhcc-------cC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHP-AKYRM-------LV  211 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~-~~~~~-------~~  211 (264)
                      .+.+||=.|+.. .+..++++.+ ....+|+.++.++...++.++.....  .+++++..|+.+. .....       ..
T Consensus        11 ~~k~vlITGas~-GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~~   89 (311)
T 3o26_A           11 KRRCAVVTGGNK-GIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTHF   89 (311)
T ss_dssp             -CCEEEESSCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEecCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHhC
Confidence            456788777664 4555554443 23458999999965544444433222  3799999999987 32111       12


Q ss_pred             CCccEEEEcCC
Q 024665          212 GMVDVIFSDVA  222 (264)
Q Consensus       212 ~~fD~V~~d~p  222 (264)
                      +.+|+||.++.
T Consensus        90 g~iD~lv~nAg  100 (311)
T 3o26_A           90 GKLDILVNNAG  100 (311)
T ss_dssp             SSCCEEEECCC
T ss_pred             CCCCEEEECCc
Confidence            47999999876

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=83.91  E-value=4.7  Score=33.66  Aligned_cols=78  Identities=12%  Similarity=0.124  Sum_probs=47.7

Q ss_pred             CCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHH-HHHHHHHhhc--CCCeEEEEcCCCCchhhccc-------CC
Q 024665          144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRS-GRDLVNMAKK--RTNVIPIIEDARHPAKYRML-------VG  212 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~-~~~l~~~a~~--~~nV~~i~~D~~~~~~~~~~-------~~  212 (264)
                      +.+||=.|++ +.+..++++.+- ...+|+.++.++.. ++++.+....  ..++.++..|+.+.......       .+
T Consensus         4 ~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   82 (260)
T 1x1t_A            4 GKVAVVTGST-SGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQMG   82 (260)
T ss_dssp             TCEEEETTCS-SHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCC-cHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            4567766665 455655554442 34589999988544 3343332221  34789999999986532111       13


Q ss_pred             CccEEEEcCC
Q 024665          213 MVDVIFSDVA  222 (264)
Q Consensus       213 ~fD~V~~d~p  222 (264)
                      .+|+++.+..
T Consensus        83 ~iD~lv~~Ag   92 (260)
T 1x1t_A           83 RIDILVNNAG   92 (260)
T ss_dssp             CCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7899998865

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=83.79  E-value=0.38  Score=41.94  Aligned_cols=30  Identities=13%  Similarity=0.027  Sum_probs=23.3

Q ss_pred             CeEEEEcCCCCchhhcccCCCccEEEEcCCC
Q 024665          193 NVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       193 nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~  223 (264)
                      +++++++|+.+..+. ...++||+|++|||.
T Consensus        21 ~~~i~~gD~~~~l~~-l~~~s~DlIvtdPPY   50 (297)
T 2zig_A           21 VHRLHVGDAREVLAS-FPEASVHLVVTSPPY   50 (297)
T ss_dssp             CEEEEESCHHHHHTT-SCTTCEEEEEECCCC
T ss_pred             CCEEEECcHHHHHhh-CCCCceeEEEECCCC
Confidence            688999999885432 234689999999994

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=83.68  E-value=5.9  Score=33.69  Aligned_cols=79  Identities=13%  Similarity=0.088  Sum_probs=51.4

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhc-------ccCCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYR-------MLVGM  213 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~-------~~~~~  213 (264)
                      .|.++|=-|+++|. ...+|+.+ ....+|+.+|.+++.+++..+.... ..++.+++.|+++.....       ...+.
T Consensus         8 ~gKvalVTGas~GI-G~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~   86 (255)
T 4g81_D            8 TGKTALVTGSARGL-GFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIH   86 (255)
T ss_dssp             TTCEEEETTCSSHH-HHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCC
Confidence            46777777777665 33333332 2346899999997665555544433 348999999999865321       12357


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      .|+++.|..
T Consensus        87 iDiLVNNAG   95 (255)
T 4g81_D           87 VDILINNAG   95 (255)
T ss_dssp             CCEEEECCC
T ss_pred             CcEEEECCC
Confidence            899998865

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=83.63  E-value=3.2  Score=34.16  Aligned_cols=77  Identities=13%  Similarity=0.171  Sum_probs=48.2

Q ss_pred             CEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHh-hc-CCCeEEEEcCCCCchhhccc-------CCCc
Q 024665          145 ARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMA-KK-RTNVIPIIEDARHPAKYRML-------VGMV  214 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a-~~-~~nV~~i~~D~~~~~~~~~~-------~~~f  214 (264)
                      .+||=.|+. |.+..++++.+- ...+|+.++.++...+++.+.. .. ..+++++..|+.+.......       .+.+
T Consensus         3 k~vlItGas-ggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   81 (250)
T 2cfc_A            3 RVAIVTGAS-SGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQFGAI   81 (250)
T ss_dssp             CEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence            467767754 566666655442 3358999999965544443332 11 23689999999986532111       1378


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+|+.+..
T Consensus        82 d~li~~Ag   89 (250)
T 2cfc_A           82 DVLVNNAG   89 (250)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99998865

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=83.59  E-value=11  Score=31.12  Aligned_cols=77  Identities=10%  Similarity=0.214  Sum_probs=48.1

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCCh-HHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-------CCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSH-RSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGM  213 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~-~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-------~~~  213 (264)
                      .+.+||=.|+..| +...+++.+ ....+|+.++.++ ...++.++  ....++.++..|+.+.......       .+.
T Consensus         6 ~~k~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   82 (249)
T 2ew8_A            6 KDKLAVITGGANG-IGRAIAERFAVEGADIAIADLVPAPEAEAAIR--NLGRRVLTVKCDVSQPGDVEAFGKQVISTFGR   82 (249)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSCCHHHHHHHH--HTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEcCCchhHHHHHHH--hcCCcEEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence            4567887786554 555554443 2345899999886 54333222  2234799999999986532111       247


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      +|+++.+..
T Consensus        83 id~lv~nAg   91 (249)
T 2ew8_A           83 CDILVNNAG   91 (249)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            899998865

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=83.41  E-value=3.5  Score=36.38  Aligned_cols=48  Identities=15%  Similarity=0.161  Sum_probs=34.2

Q ss_pred             ccccCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCEEEEEeCChHHHHHH
Q 024665          136 VDNIWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDL  184 (264)
Q Consensus       136 l~~~~l~~g~~VLDlG~G~-G~~s~~la~~~~~~g~V~avD~s~~~~~~l  184 (264)
                      ++...++++++||=+|||+ |.+++.+|...+ ...|+++|.+++-.+.+
T Consensus       172 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a  220 (363)
T 3m6i_A          172 LQRAGVRLGDPVLICGAGPIGLITMLCAKAAG-ACPLVITDIDEGRLKFA  220 (363)
T ss_dssp             HHHHTCCTTCCEEEECCSHHHHHHHHHHHHTT-CCSEEEEESCHHHHHHH
T ss_pred             HHHcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHH
Confidence            3444689999999999855 667777787754 32499999997544333

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=83.41  E-value=11  Score=30.79  Aligned_cols=76  Identities=24%  Similarity=0.234  Sum_probs=47.6

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc---CCCccEEE
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML---VGMVDVIF  218 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~---~~~fD~V~  218 (264)
                      ++.+||=.|+. |.+..++++.+ ....+|+.++.++...+++.+.   ..+++++..|+.+.......   .+.+|+|+
T Consensus         6 ~~k~vlITGas-ggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi   81 (244)
T 3d3w_A            6 AGRRVLVTGAG-KGIGRGTVQALHATGARVVAVSRTQADLDSLVRE---CPGIEPVCVDLGDWEATERALGSVGPVDLLV   81 (244)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---STTCEEEECCTTCHHHHHHHHTTCCCCCEEE
T ss_pred             CCcEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---cCCCCEEEEeCCCHHHHHHHHHHcCCCCEEE
Confidence            46678877765 55555555443 2345899999986544333322   23577889999986532211   13689999


Q ss_pred             EcCC
Q 024665          219 SDVA  222 (264)
Q Consensus       219 ~d~p  222 (264)
                      .+..
T Consensus        82 ~~Ag   85 (244)
T 3d3w_A           82 NNAA   85 (244)
T ss_dssp             ECCC
T ss_pred             ECCc
Confidence            8865

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=83.41  E-value=2.7  Score=35.67  Aligned_cols=79  Identities=13%  Similarity=0.158  Sum_probs=48.8

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhc-CC---CeEEEEcCCCCchhhccc-------
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKK-RT---NVIPIIEDARHPAKYRML-------  210 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~-~~---nV~~i~~D~~~~~~~~~~-------  210 (264)
                      .+.+||=.|+. +.+..++++.+- ...+|+.++.++..++++.+.... ..   ++.++..|+.+.......       
T Consensus         5 ~~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (280)
T 1xkq_A            5 SNKTVIITGSS-NGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   83 (280)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHh
Confidence            35677777755 455555554432 345899999997554444433322 22   689999999986532111       


Q ss_pred             CCCccEEEEcCC
Q 024665          211 VGMVDVIFSDVA  222 (264)
Q Consensus       211 ~~~fD~V~~d~p  222 (264)
                      .+.+|+|+.+..
T Consensus        84 ~g~iD~lv~nAg   95 (280)
T 1xkq_A           84 FGKIDVLVNNAG   95 (280)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            136899998865

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=83.39  E-value=1.9  Score=38.19  Aligned_cols=40  Identities=25%  Similarity=0.372  Sum_probs=30.4

Q ss_pred             ccCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCEEEEEeCChH
Q 024665          138 NIWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHR  179 (264)
Q Consensus       138 ~~~l~~g~~VLDlG~G~-G~~s~~la~~~~~~g~V~avD~s~~  179 (264)
                      ...++++++||-+|+|+ |.+++.+|...+  .+|+++|.+++
T Consensus       174 ~~~~~~g~~VlV~GaG~vG~~~~qlak~~G--a~Vi~~~~~~~  214 (360)
T 1piw_A          174 RNGCGPGKKVGIVGLGGIGSMGTLISKAMG--AETYVISRSSR  214 (360)
T ss_dssp             HTTCSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSST
T ss_pred             HcCCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHH
Confidence            34689999999999843 556777777754  37999998853

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=82.91  E-value=5.8  Score=33.22  Aligned_cols=66  Identities=15%  Similarity=0.225  Sum_probs=49.0

Q ss_pred             CEEEEEcccCChHHHHHHHHhCCC-CEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665          145 ARVLYLGAASGTTVSHVSDIVGPN-GVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~~~~-g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      ++||=.||  |.+..++++.+-.. -+|++++.++.....+.     ..+++++..|+.++.     ...+|+||...+
T Consensus         6 ~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-----~~~~~~~~~D~~d~~-----~~~~d~vi~~a~   72 (286)
T 3ius_A            6 GTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPDQMEAIR-----ASGAEPLLWPGEEPS-----LDGVTHLLISTA   72 (286)
T ss_dssp             CEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHH-----HTTEEEEESSSSCCC-----CTTCCEEEECCC
T ss_pred             CcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHh-----hCCCeEEEecccccc-----cCCCCEEEECCC
Confidence            57999994  99999998877433 48999999864322211     147999999998854     367899998776

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=82.89  E-value=2.8  Score=33.88  Aligned_cols=74  Identities=14%  Similarity=0.134  Sum_probs=50.3

Q ss_pred             EEEEEcccCChHHHHHHHHhC--CCCEEEEEeCChH-HHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665          146 RVLYLGAASGTTVSHVSDIVG--PNGVVYAVEFSHR-SGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       146 ~VLDlG~G~G~~s~~la~~~~--~~g~V~avD~s~~-~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      +||=.| ++|.+..++++.+-  ...+|++++.++. .++++.   ....+++++..|+.+..........+|+|+.+..
T Consensus         7 ~vlVtG-asg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag   82 (221)
T 3r6d_A            7 YITILG-AAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEI---IDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAM   82 (221)
T ss_dssp             EEEEES-TTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHH---HTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCC
T ss_pred             EEEEEe-CCcHHHHHHHHHHHhcCCceEEEEecCccccchhhc---cCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCC
Confidence            477666 46667776665543  4568999999975 432222   2345899999999987644334467899999877


Q ss_pred             C
Q 024665          223 Q  223 (264)
Q Consensus       223 ~  223 (264)
                      .
T Consensus        83 ~   83 (221)
T 3r6d_A           83 E   83 (221)
T ss_dssp             C
T ss_pred             C
Confidence            4

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=82.85  E-value=5.3  Score=36.99  Aligned_cols=77  Identities=18%  Similarity=0.237  Sum_probs=55.0

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhc-ccCCCccEEEEc
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR-MLVGMVDVIFSD  220 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~-~~~~~fD~V~~d  220 (264)
                      ++-.+|+=+|  -|..+..+|+.+.....|.-+|.+++-+++   .+...+++.++++|+++..... .-...+|++++-
T Consensus       233 ~~~~~v~I~G--gG~ig~~lA~~L~~~~~v~iIE~d~~r~~~---la~~l~~~~Vi~GD~td~~~L~ee~i~~~D~~ia~  307 (461)
T 4g65_A          233 KPYRRIMIVG--GGNIGASLAKRLEQTYSVKLIERNLQRAEK---LSEELENTIVFCGDAADQELLTEENIDQVDVFIAL  307 (461)
T ss_dssp             SCCCEEEEEC--CSHHHHHHHHHHTTTSEEEEEESCHHHHHH---HHHHCTTSEEEESCTTCHHHHHHTTGGGCSEEEEC
T ss_pred             ccccEEEEEc--chHHHHHHHHHhhhcCceEEEecCHHHHHH---HHHHCCCceEEeccccchhhHhhcCchhhcEEEEc
Confidence            3456776655  567888999888888899999999754433   3334568899999999975331 123579999986


Q ss_pred             CCC
Q 024665          221 VAQ  223 (264)
Q Consensus       221 ~p~  223 (264)
                      ...
T Consensus       308 T~~  310 (461)
T 4g65_A          308 TNE  310 (461)
T ss_dssp             CSC
T ss_pred             ccC
Confidence            553

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=82.51  E-value=3  Score=34.99  Aligned_cols=79  Identities=10%  Similarity=0.048  Sum_probs=47.2

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEE-eCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhccc-------CC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAV-EFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRML-------VG  212 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~av-D~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~~-------~~  212 (264)
                      .+.+||=.|++.|. ..++++.+ ....+|+.+ +.+++..++..+... ...++.++..|+++.......       .+
T Consensus         7 ~~k~vlVTGas~GI-G~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   85 (259)
T 3edm_A            7 TNRTIVVAGAGRDI-GRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKFG   85 (259)
T ss_dssp             TTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            46788888876654 44444333 234578887 555444333333332 234789999999986532111       14


Q ss_pred             CccEEEEcCC
Q 024665          213 MVDVIFSDVA  222 (264)
Q Consensus       213 ~fD~V~~d~p  222 (264)
                      .+|+++.+..
T Consensus        86 ~id~lv~nAg   95 (259)
T 3edm_A           86 EIHGLVHVAG   95 (259)
T ss_dssp             SEEEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7899998864

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=82.47  E-value=4.2  Score=35.03  Aligned_cols=77  Identities=16%  Similarity=0.157  Sum_probs=50.9

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc-------cCCCc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMV  214 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~-------~~~~f  214 (264)
                      .|..+|=-|+++|. ...+|+.+ ....+|+.+|.+++.+++.++..  ..++.+++.|+.+......       ..+..
T Consensus        28 ~gKvalVTGas~GI-G~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~--g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i  104 (273)
T 4fgs_A           28 NAKIAVITGATSGI-GLAAAKRFVAEGARVFITGRRKDVLDAAIAEI--GGGAVGIQADSANLAELDRLYEKVKAEAGRI  104 (273)
T ss_dssp             TTCEEEEESCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--CTTCEEEECCTTCHHHHHHHHHHHHHHHSCE
T ss_pred             CCCEEEEeCcCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc--CCCeEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            57788888887775 33333222 23568999999976655554433  3478899999998653211       12578


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+++.|..
T Consensus       105 DiLVNNAG  112 (273)
T 4fgs_A          105 DVLFVNAG  112 (273)
T ss_dssp             EEEEECCC
T ss_pred             CEEEECCC
Confidence            99998865

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=82.39  E-value=2.5  Score=37.97  Aligned_cols=42  Identities=21%  Similarity=0.381  Sum_probs=32.6

Q ss_pred             ccCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCEEEEEeCChHH
Q 024665          138 NIWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRS  180 (264)
Q Consensus       138 ~~~l~~g~~VLDlG~G~-G~~s~~la~~~~~~g~V~avD~s~~~  180 (264)
                      ...++++++||-+|||+ |.+++.+|..++ ..+|+++|.+++-
T Consensus       180 ~~~~~~g~~VlV~GaG~vG~~aiqlAk~~G-a~~Vi~~~~~~~~  222 (398)
T 1kol_A          180 TAGVGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPAR  222 (398)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHH
T ss_pred             HcCCCCCCEEEEECCcHHHHHHHHHHHHCC-CCeEEEEcCCHHH
Confidence            34689999999999865 667778888764 3479999999643

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=82.37  E-value=7.1  Score=32.71  Aligned_cols=79  Identities=10%  Similarity=0.164  Sum_probs=48.8

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhh-c--CCCeEEEEcCCCCchhhcc---cCCCcc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAK-K--RTNVIPIIEDARHPAKYRM---LVGMVD  215 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~-~--~~nV~~i~~D~~~~~~~~~---~~~~fD  215 (264)
                      .+.+||=.|++ +.+..++++.+ ....+|+.++.++...++..+... .  ...+.++..|+.+......   ..+.+|
T Consensus         9 ~~k~~lVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id   87 (267)
T 3t4x_A            9 KGKTALVTGST-AGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKVD   87 (267)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCCS
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCCC
Confidence            35677777765 45555555443 234589999999655444433322 1  2368889999988643211   124789


Q ss_pred             EEEEcCC
Q 024665          216 VIFSDVA  222 (264)
Q Consensus       216 ~V~~d~p  222 (264)
                      +++.+..
T Consensus        88 ~lv~nAg   94 (267)
T 3t4x_A           88 ILINNLG   94 (267)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9998865

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=82.32  E-value=7  Score=31.93  Aligned_cols=77  Identities=14%  Similarity=0.088  Sum_probs=47.3

Q ss_pred             CEEEEEcccCChHHHHHHHHhCC-CC-------EEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhccc-----
Q 024665          145 ARVLYLGAASGTTVSHVSDIVGP-NG-------VVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRML-----  210 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~~~-~g-------~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~-----  210 (264)
                      .+||=.|+ +|.+..++++.+-. ..       +|+.++.++...+.+.+.... ..++.++..|+.+.......     
T Consensus         3 k~vlITGa-sggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   81 (244)
T 2bd0_A            3 HILLITGA-GKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIV   81 (244)
T ss_dssp             EEEEEETT-TSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CEEEEECC-CChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCCHHHHHHHHHHHH
Confidence            45676665 55666666554422 23       799999996554444333322 34789999999986532111     


Q ss_pred             --CCCccEEEEcCC
Q 024665          211 --VGMVDVIFSDVA  222 (264)
Q Consensus       211 --~~~fD~V~~d~p  222 (264)
                        .+.+|+|+.+..
T Consensus        82 ~~~g~id~li~~Ag   95 (244)
T 2bd0_A           82 ERYGHIDCLVNNAG   95 (244)
T ss_dssp             HHTSCCSEEEECCC
T ss_pred             HhCCCCCEEEEcCC
Confidence              247999998765

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=82.28  E-value=3  Score=35.87  Aligned_cols=80  Identities=15%  Similarity=0.170  Sum_probs=50.1

Q ss_pred             CCCEEEEEcccC-ChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-------CCC
Q 024665          143 PGARVLYLGAAS-GTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGM  213 (264)
Q Consensus       143 ~g~~VLDlG~G~-G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-------~~~  213 (264)
                      .+.+||=.|+++ ..+...+++.+ ....+|+.++.+++..+.+.+......++.++..|+++......+       .+.
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  108 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAEEWGS  108 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            467899999875 34444444333 234589999998644333333333334678999999986532111       147


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      +|+++.+..
T Consensus       109 iD~lVnnAG  117 (296)
T 3k31_A          109 LDFVVHAVA  117 (296)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            899998876

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=82.24  E-value=2.3  Score=36.67  Aligned_cols=79  Identities=18%  Similarity=0.189  Sum_probs=48.8

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcc-------cCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRM-------LVG  212 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~-------~~~  212 (264)
                      .+.+||=.|++. .+...+++.+ ....+|+.++.++..++++.+.....  .++.++..|+.+......       ..+
T Consensus        40 ~~k~vlVTGas~-GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  118 (293)
T 3rih_A           40 SARSVLVTGGTK-GIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDAFG  118 (293)
T ss_dssp             TTCEEEETTTTS-HHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence            456777666654 4555554443 23458999999965444444333222  379999999998643211       124


Q ss_pred             CccEEEEcCC
Q 024665          213 MVDVIFSDVA  222 (264)
Q Consensus       213 ~fD~V~~d~p  222 (264)
                      .+|+++.++.
T Consensus       119 ~iD~lvnnAg  128 (293)
T 3rih_A          119 ALDVVCANAG  128 (293)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6899998865

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=81.93  E-value=5.2  Score=34.02  Aligned_cols=77  Identities=16%  Similarity=0.209  Sum_probs=49.3

Q ss_pred             CCCEEEEEcccCCh---HHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc-------cCC
Q 024665          143 PGARVLYLGAASGT---TVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVG  212 (264)
Q Consensus       143 ~g~~VLDlG~G~G~---~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~-------~~~  212 (264)
                      .+.++|=-|+++|.   ++..|++   ...+|+.++.+++..+.+.+......++.++..|+++......       ..+
T Consensus         6 ~gKvalVTGas~GIG~aia~~la~---~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~G   82 (258)
T 4gkb_A            6 QDKVVIVTGGASGIGGAISMRLAE---ERAIPVVFARHAPDGAFLDALAQRQPRATYLPVELQDDAQCRDAVAQTIATFG   82 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH---TTCEEEEEESSCCCHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH---cCCEEEEEECCcccHHHHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            47788888888876   3334443   3568999998743222223333345588999999998643211       125


Q ss_pred             CccEEEEcCC
Q 024665          213 MVDVIFSDVA  222 (264)
Q Consensus       213 ~fD~V~~d~p  222 (264)
                      ..|+++.|..
T Consensus        83 ~iDiLVNnAG   92 (258)
T 4gkb_A           83 RLDGLVNNAG   92 (258)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7899998865

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=81.92  E-value=5  Score=33.80  Aligned_cols=76  Identities=18%  Similarity=0.164  Sum_probs=48.0

Q ss_pred             CCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-------CCCcc
Q 024665          144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGMVD  215 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-------~~~fD  215 (264)
                      +.+||=.| |+|.+..++++.+- ...+|++++.++...+++.+.  ...+++++..|+++.......       .+.+|
T Consensus         5 ~k~vlVTG-as~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id   81 (281)
T 3m1a_A            5 AKVWLVTG-ASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAA--YPDRAEAISLDVTDGERIDVVAADVLARYGRVD   81 (281)
T ss_dssp             CCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHH--CTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCS
T ss_pred             CcEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh--ccCCceEEEeeCCCHHHHHHHHHHHHHhCCCCC
Confidence            34566555 45666666665542 345899999986544343332  234799999999986532111       13689


Q ss_pred             EEEEcCC
Q 024665          216 VIFSDVA  222 (264)
Q Consensus       216 ~V~~d~p  222 (264)
                      +|+.++.
T Consensus        82 ~lv~~Ag   88 (281)
T 3m1a_A           82 VLVNNAG   88 (281)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9998876

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=81.88  E-value=1.7  Score=35.62  Aligned_cols=76  Identities=12%  Similarity=0.118  Sum_probs=48.1

Q ss_pred             CCEEEEEcccCChHHHHHHHHhCCC---CEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccC-------C-
Q 024665          144 GARVLYLGAASGTTVSHVSDIVGPN---GVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLV-------G-  212 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~~~---g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~-------~-  212 (264)
                      +.+||=.|+ +|.+..++++.+-..   .+|++++.++...+++.+.  ...+++++..|+.+........       + 
T Consensus         3 ~k~vlItGa-sggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~l~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   79 (250)
T 1yo6_A            3 PGSVVVTGA-NRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSI--KDSRVHVLPLTVTCDKSLDTFVSKVGEIVGS   79 (250)
T ss_dssp             CSEEEESSC-SSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTC--CCTTEEEEECCTTCHHHHHHHHHHHHHHHGG
T ss_pred             CCEEEEecC-CchHHHHHHHHHHhcCCCcEEEEEecCHHHHHHHHhc--cCCceEEEEeecCCHHHHHHHHHHHHHhcCC
Confidence            356776665 567777776655333   5899999985443332221  2347999999999865321111       1 


Q ss_pred             -CccEEEEcCC
Q 024665          213 -MVDVIFSDVA  222 (264)
Q Consensus       213 -~fD~V~~d~p  222 (264)
                       .+|+||.++.
T Consensus        80 ~~id~li~~Ag   90 (250)
T 1yo6_A           80 DGLSLLINNAG   90 (250)
T ss_dssp             GCCCEEEECCC
T ss_pred             CCCcEEEECCc
Confidence             7899998764

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=81.71  E-value=4.8  Score=33.67  Aligned_cols=79  Identities=16%  Similarity=0.196  Sum_probs=48.8

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhccc-------C
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRML-------V  211 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~-------~  211 (264)
                      .+.+||=.|+. |.+..++++.+ ....+|+.++.++...+++.+....   ..++.++..|+.+.......       .
T Consensus         6 ~~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (267)
T 2gdz_A            6 NGKVALVTGAA-QGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   84 (267)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-CcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence            45678888865 45555554443 2345899999996544333332222   12689999999986532111       1


Q ss_pred             CCccEEEEcCC
Q 024665          212 GMVDVIFSDVA  222 (264)
Q Consensus       212 ~~fD~V~~d~p  222 (264)
                      +.+|+|+.+..
T Consensus        85 g~id~lv~~Ag   95 (267)
T 2gdz_A           85 GRLDILVNNAG   95 (267)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            36899998876

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=81.62  E-value=2.5  Score=36.11  Aligned_cols=77  Identities=18%  Similarity=0.144  Sum_probs=49.4

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc---CCCccEEE
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML---VGMVDVIF  218 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~---~~~fD~V~  218 (264)
                      .+.+||=.|+..| +..++++.+ ....+|+.++.++...+++.+.  ...+++++..|+.+.......   ...+|+|+
T Consensus        15 ~gk~vlVTGas~g-IG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~v~~~~~~~~~iD~lv   91 (291)
T 3rd5_A           15 AQRTVVITGANSG-LGAVTARELARRGATVIMAVRDTRKGEAAART--MAGQVEVRELDLQDLSSVRRFADGVSGADVLI   91 (291)
T ss_dssp             TTCEEEEECCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHTT--SSSEEEEEECCTTCHHHHHHHHHTCCCEEEEE
T ss_pred             CCCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH--hcCCeeEEEcCCCCHHHHHHHHHhcCCCCEEE
Confidence            4678887777654 444444433 2346899999997543333221  234799999999987533211   24789999


Q ss_pred             EcCC
Q 024665          219 SDVA  222 (264)
Q Consensus       219 ~d~p  222 (264)
                      .++.
T Consensus        92 ~nAg   95 (291)
T 3rd5_A           92 NNAG   95 (291)
T ss_dssp             ECCC
T ss_pred             ECCc
Confidence            8865

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=81.55  E-value=4  Score=34.03  Aligned_cols=79  Identities=13%  Similarity=0.070  Sum_probs=48.7

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHh-hcCCCeEEEEcCCCCchhhccc-------CCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMA-KKRTNVIPIIEDARHPAKYRML-------VGM  213 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a-~~~~nV~~i~~D~~~~~~~~~~-------~~~  213 (264)
                      .+.+||=.|+. |.+..++++.+- ...+|+.++.++..++++.+.. ....++.++..|+.+.......       .+.
T Consensus        13 ~~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   91 (260)
T 2zat_A           13 ENKVALVTAST-DGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHGG   91 (260)
T ss_dssp             TTCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            35677766654 555665554432 3458999999965443333322 2234789999999886532111       137


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      +|+|+.+..
T Consensus        92 iD~lv~~Ag  100 (260)
T 2zat_A           92 VDILVSNAA  100 (260)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            899998865

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=81.54  E-value=3.9  Score=34.78  Aligned_cols=79  Identities=11%  Similarity=0.141  Sum_probs=49.5

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhc--CCCeEEEEcCCCCchhhcc-------cCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKK--RTNVIPIIEDARHPAKYRM-------LVG  212 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~--~~nV~~i~~D~~~~~~~~~-------~~~  212 (264)
                      .+.+||=.|+. |.+..++++.+- ...+|+.++.++...+++.+....  ..++.++..|+.+......       ..+
T Consensus        25 ~~k~vlITGas-ggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g  103 (302)
T 1w6u_A           25 QGKVAFITGGG-TGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAG  103 (302)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence            45678877765 555555554432 345899999996544333332211  3479999999998653211       124


Q ss_pred             CccEEEEcCC
Q 024665          213 MVDVIFSDVA  222 (264)
Q Consensus       213 ~fD~V~~d~p  222 (264)
                      .+|+|+.++.
T Consensus       104 ~id~li~~Ag  113 (302)
T 1w6u_A          104 HPNIVINNAA  113 (302)
T ss_dssp             SCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6799998865

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=81.41  E-value=4.3  Score=34.47  Aligned_cols=77  Identities=14%  Similarity=0.148  Sum_probs=47.8

Q ss_pred             CEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc-------cCCCccE
Q 024665          145 ARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMVDV  216 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~-------~~~~fD~  216 (264)
                      .+||=.|+..|. ...+++.+ ....+|+.++.++..++++.+......++.++..|+.+......       ..+.+|+
T Consensus        22 k~vlVTGas~gI-G~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~  100 (272)
T 2nwq_A           22 STLFITGATSGF-GEACARRFAEAGWSLVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEEFATLRG  100 (272)
T ss_dssp             CEEEESSTTTSS-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCCGGGSSCCE
T ss_pred             cEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCCCE
Confidence            578877766554 44444332 23458999999976554444433222479999999998653211       1246799


Q ss_pred             EEEcCC
Q 024665          217 IFSDVA  222 (264)
Q Consensus       217 V~~d~p  222 (264)
                      ++.+..
T Consensus       101 lvnnAG  106 (272)
T 2nwq_A          101 LINNAG  106 (272)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            998864

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=81.26  E-value=3.3  Score=34.99  Aligned_cols=77  Identities=17%  Similarity=0.218  Sum_probs=46.2

Q ss_pred             CCCEEEEEcccCCh---HHHHHHHHhCCCCEEEEEeC-ChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhccc-------
Q 024665          143 PGARVLYLGAASGT---TVSHVSDIVGPNGVVYAVEF-SHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRML-------  210 (264)
Q Consensus       143 ~g~~VLDlG~G~G~---~s~~la~~~~~~g~V~avD~-s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~~-------  210 (264)
                      .+.+||=.|+++|.   ++..|++.   ..+|+.++. ++...+++.+... ...++.++..|+.+.......       
T Consensus        26 ~~k~~lVTGas~GIG~aia~~la~~---G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~  102 (267)
T 3u5t_A           26 TNKVAIVTGASRGIGAAIAARLASD---GFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEA  102 (267)
T ss_dssp             -CCEEEEESCSSHHHHHHHHHHHHH---TCEEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC---CCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            56788888877665   33344433   347777754 4444434333332 234799999999986532111       


Q ss_pred             CCCccEEEEcCC
Q 024665          211 VGMVDVIFSDVA  222 (264)
Q Consensus       211 ~~~fD~V~~d~p  222 (264)
                      .+.+|+++.++.
T Consensus       103 ~g~iD~lvnnAG  114 (267)
T 3u5t_A          103 FGGVDVLVNNAG  114 (267)
T ss_dssp             HSCEEEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            147899998875

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=81.24  E-value=5.7  Score=33.03  Aligned_cols=79  Identities=11%  Similarity=0.057  Sum_probs=48.0

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhh--cCCCeEEEEcCC--CCchhhc-------cc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAK--KRTNVIPIIEDA--RHPAKYR-------ML  210 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~--~~~nV~~i~~D~--~~~~~~~-------~~  210 (264)
                      .+.+||=.|++.| +...+++.+ ....+|+.++.++..++++.+...  ...++.++..|+  .+.....       ..
T Consensus        11 ~~k~vlVTGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   89 (252)
T 3f1l_A           11 NDRIILVTGASDG-IGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVN   89 (252)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHHh
Confidence            5678888887654 444444433 234589999999655444433222  123788999999  6643211       11


Q ss_pred             CCCccEEEEcCC
Q 024665          211 VGMVDVIFSDVA  222 (264)
Q Consensus       211 ~~~fD~V~~d~p  222 (264)
                      .+.+|+++.+..
T Consensus        90 ~g~id~lv~nAg  101 (252)
T 3f1l_A           90 YPRLDGVLHNAG  101 (252)
T ss_dssp             CSCCSEEEECCC
T ss_pred             CCCCCEEEECCc
Confidence            247899998865

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=81.24  E-value=2.7  Score=37.19  Aligned_cols=43  Identities=23%  Similarity=0.287  Sum_probs=32.6

Q ss_pred             cccCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCEEEEEeCChHH
Q 024665          137 DNIWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRS  180 (264)
Q Consensus       137 ~~~~l~~g~~VLDlG~G~-G~~s~~la~~~~~~g~V~avD~s~~~  180 (264)
                      ....++++++||-+|||+ |.+++.+|...+ ..+|+++|.+++-
T Consensus       165 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~  208 (356)
T 1pl8_A          165 RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTDLSATR  208 (356)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHH
Confidence            334689999999999865 667777777754 3389999999643

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=81.21  E-value=4.2  Score=34.19  Aligned_cols=79  Identities=11%  Similarity=0.103  Sum_probs=48.8

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCCh---HHHHHHHHHhhc-CCCeEEEEcCCCCchhhccc-------
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSH---RSGRDLVNMAKK-RTNVIPIIEDARHPAKYRML-------  210 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~---~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~-------  210 (264)
                      .+.+||=.|+++| +...++..+- ...+|+.++.+.   +.++++.+.... ..++.++..|+.+.......       
T Consensus        10 ~~k~vlVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~   88 (262)
T 3ksu_A           10 KNKVIVIAGGIKN-LGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAEKE   88 (262)
T ss_dssp             TTCEEEEETCSSH-HHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            4667887777655 5666665553 345788887652   233333333322 34799999999986532111       


Q ss_pred             CCCccEEEEcCC
Q 024665          211 VGMVDVIFSDVA  222 (264)
Q Consensus       211 ~~~fD~V~~d~p  222 (264)
                      .+.+|+++.+..
T Consensus        89 ~g~iD~lvnnAg  100 (262)
T 3ksu_A           89 FGKVDIAINTVG  100 (262)
T ss_dssp             HCSEEEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            147899998866

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=81.20  E-value=4  Score=34.49  Aligned_cols=75  Identities=12%  Similarity=0.111  Sum_probs=48.2

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc------cCCCcc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM------LVGMVD  215 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~------~~~~fD  215 (264)
                      .+.+||=.|+..| +..++++.+ ....+|+.++.++..++++.+..  ..++.+++.|+.+......      .....|
T Consensus        29 ~~k~vlVTGas~G-IG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~id  105 (281)
T 3ppi_A           29 EGASAIVSGGAGG-LGEATVRRLHADGLGVVIADLAAEKGKALADEL--GNRAEFVSTNVTSEDSVLAAIEAANQLGRLR  105 (281)
T ss_dssp             TTEEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHTTSSEEE
T ss_pred             CCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh--CCceEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence            4567887787655 444444333 23458999999976554544433  3579999999998653211      123689


Q ss_pred             EEEEc
Q 024665          216 VIFSD  220 (264)
Q Consensus       216 ~V~~d  220 (264)
                      +++.+
T Consensus       106 ~lv~~  110 (281)
T 3ppi_A          106 YAVVA  110 (281)
T ss_dssp             EEEEC
T ss_pred             eEEEc
Confidence            99987

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=80.93  E-value=3.5  Score=35.50  Aligned_cols=79  Identities=11%  Similarity=0.179  Sum_probs=49.0

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhc-CC---CeEEEEcCCCCchhhccc-------
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKK-RT---NVIPIIEDARHPAKYRML-------  210 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~-~~---nV~~i~~D~~~~~~~~~~-------  210 (264)
                      .+.+||=.|+. +.+...+++.+- ...+|+.++.++..++++.+.... ..   ++.++..|+.+.......       
T Consensus        25 ~~k~vlVTGas-~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  103 (297)
T 1xhl_A           25 SGKSVIITGSS-NGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK  103 (297)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHHh
Confidence            45677766764 555555554432 345899999996554443333222 22   689999999986532111       


Q ss_pred             CCCccEEEEcCC
Q 024665          211 VGMVDVIFSDVA  222 (264)
Q Consensus       211 ~~~fD~V~~d~p  222 (264)
                      .+.+|+|+.+..
T Consensus       104 ~g~iD~lvnnAG  115 (297)
T 1xhl_A          104 FGKIDILVNNAG  115 (297)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            137899998865

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=80.89  E-value=8.4  Score=31.26  Aligned_cols=75  Identities=15%  Similarity=0.170  Sum_probs=46.8

Q ss_pred             CCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-------CCCcc
Q 024665          144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGMVD  215 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-------~~~fD  215 (264)
                      +.+||=.|+ +|.+..++++.+- ...+|+.++.++...+++.+.   ..++.++..|+.+.......       .+.+|
T Consensus         5 ~k~vlVtGa-sggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   80 (234)
T 2ehd_A            5 KGAVLITGA-SRGIGEATARLLHAKGYRVGLMARDEKRLQALAAE---LEGALPLPGDVREEGDWARAVAAMEEAFGELS   80 (234)
T ss_dssp             CCEEEESST-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---STTCEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH---hhhceEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            346775554 5666666665542 335899999986544333322   22788999999986532111       13689


Q ss_pred             EEEEcCC
Q 024665          216 VIFSDVA  222 (264)
Q Consensus       216 ~V~~d~p  222 (264)
                      +|+.+..
T Consensus        81 ~li~~Ag   87 (234)
T 2ehd_A           81 ALVNNAG   87 (234)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9998865

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=80.83  E-value=3.7  Score=34.99  Aligned_cols=79  Identities=16%  Similarity=0.229  Sum_probs=48.2

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChH-------HHHHHHH-HhhcCCCeEEEEcCCCCchhhccc---
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHR-------SGRDLVN-MAKKRTNVIPIIEDARHPAKYRML---  210 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~-------~~~~l~~-~a~~~~nV~~i~~D~~~~~~~~~~---  210 (264)
                      .+.+||=.|++.| +...+++.+ ....+|+.++.++.       .+++..+ ......++.+++.|+++.......   
T Consensus         8 ~~k~vlVTGas~G-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~   86 (285)
T 3sc4_A            8 RGKTMFISGGSRG-IGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAAVAK   86 (285)
T ss_dssp             TTCEEEEESCSSH-HHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHH
Confidence            4567888887765 444444433 33458999998843       1112222 222345799999999986532111   


Q ss_pred             ----CCCccEEEEcCC
Q 024665          211 ----VGMVDVIFSDVA  222 (264)
Q Consensus       211 ----~~~fD~V~~d~p  222 (264)
                          .+.+|+++.++.
T Consensus        87 ~~~~~g~id~lvnnAg  102 (285)
T 3sc4_A           87 TVEQFGGIDICVNNAS  102 (285)
T ss_dssp             HHHHHSCCSEEEECCC
T ss_pred             HHHHcCCCCEEEECCC
Confidence                247899998865

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=80.69  E-value=3.6  Score=35.69  Aligned_cols=78  Identities=18%  Similarity=0.117  Sum_probs=51.2

Q ss_pred             CCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcC------CCeEEEEcCCCCchhhcccCCCccE
Q 024665          144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKR------TNVIPIIEDARHPAKYRMLVGMVDV  216 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~------~nV~~i~~D~~~~~~~~~~~~~fD~  216 (264)
                      ..+||=.| |+|.+..++++.+- ...+|++++.++......+......      .+++++..|+.+..........+|+
T Consensus        25 ~~~vlVtG-atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~  103 (351)
T 3ruf_A           25 PKTWLITG-VAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVDH  103 (351)
T ss_dssp             CCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTCSE
T ss_pred             CCeEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCCCE
Confidence            46888666 57888888876653 3358999998631111111111111      5899999999987655445568999


Q ss_pred             EEEcCC
Q 024665          217 IFSDVA  222 (264)
Q Consensus       217 V~~d~p  222 (264)
                      ||....
T Consensus       104 Vih~A~  109 (351)
T 3ruf_A          104 VLHQAA  109 (351)
T ss_dssp             EEECCC
T ss_pred             EEECCc
Confidence            998766

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=80.65  E-value=7.7  Score=31.78  Aligned_cols=79  Identities=16%  Similarity=0.176  Sum_probs=47.8

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCC--CCchhhcc-------c
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDA--RHPAKYRM-------L  210 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~--~~~~~~~~-------~  210 (264)
                      .+.+||=.|+. +.+..++++.+- ...+|+.++.++..++++.+.....  .++.++..|+  .+......       .
T Consensus        13 ~~k~vlITGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~   91 (247)
T 3i1j_A           13 KGRVILVTGAA-RGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEHE   91 (247)
T ss_dssp             TTCEEEESSTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHHh
Confidence            46678877765 555555554432 3458999999976554544433322  4677888877  55432111       1


Q ss_pred             CCCccEEEEcCC
Q 024665          211 VGMVDVIFSDVA  222 (264)
Q Consensus       211 ~~~fD~V~~d~p  222 (264)
                      .+.+|+++.++.
T Consensus        92 ~g~id~lv~nAg  103 (247)
T 3i1j_A           92 FGRLDGLLHNAS  103 (247)
T ss_dssp             HSCCSEEEECCC
T ss_pred             CCCCCEEEECCc
Confidence            247899998865

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=80.54  E-value=3.6  Score=33.77  Aligned_cols=72  Identities=17%  Similarity=0.162  Sum_probs=49.7

Q ss_pred             EEEEEcccCChHHHHHHHHhCCCC--EEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCCC
Q 024665          146 RVLYLGAASGTTVSHVSDIVGPNG--VVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       146 ~VLDlG~G~G~~s~~la~~~~~~g--~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~  223 (264)
                      +|| |--++|.+..++++.+-..+  +|++++.++..+    + .....+++++..|+.+..........+|+||.+...
T Consensus        25 ~vl-VtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~----~-~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~   98 (236)
T 3qvo_A           25 NVL-ILGAGGQIARHVINQLADKQTIKQTLFARQPAKI----H-KPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTG   98 (236)
T ss_dssp             EEE-EETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGS----C-SSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCS
T ss_pred             EEE-EEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhh----c-ccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCC
Confidence            455 44457888888887776555  899999886321    1 112248999999999876543444678999988774

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=80.49  E-value=6.5  Score=35.32  Aligned_cols=40  Identities=28%  Similarity=0.357  Sum_probs=30.2

Q ss_pred             CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCEEEEEeCChHH
Q 024665          140 WIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRS  180 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~-G~~s~~la~~~~~~g~V~avD~s~~~  180 (264)
                      .++++++||=+|||+ |.+++.+|...+ ..+|+++|.+++-
T Consensus       210 ~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~  250 (404)
T 3ip1_A          210 GIRPGDNVVILGGGPIGLAAVAILKHAG-ASKVILSEPSEVR  250 (404)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHH
Confidence            589999999999854 556667777654 3489999999644

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=80.45  E-value=8.5  Score=34.01  Aligned_cols=79  Identities=14%  Similarity=0.200  Sum_probs=47.9

Q ss_pred             CCCEEEEEcccCChHHHHHHHH-hCCCCEEEEEeCChHH-------HHHHHHH-hhcCCCeEEEEcCCCCchhhccc---
Q 024665          143 PGARVLYLGAASGTTVSHVSDI-VGPNGVVYAVEFSHRS-------GRDLVNM-AKKRTNVIPIIEDARHPAKYRML---  210 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~-~~~~g~V~avD~s~~~-------~~~l~~~-a~~~~nV~~i~~D~~~~~~~~~~---  210 (264)
                      .+.+||=.|+..|. ...++.. .....+|+.++.++..       ++++.+. .....++.+++.|+++.......   
T Consensus        44 ~gk~vlVTGas~GI-G~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~  122 (346)
T 3kvo_A           44 AGCTVFITGASRGI-GKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAVEK  122 (346)
T ss_dssp             TTCEEEEETTTSHH-HHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCChHH-HHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHH
Confidence            46788888877654 4444433 3345689999987431       1122222 22234789999999986532111   


Q ss_pred             ----CCCccEEEEcCC
Q 024665          211 ----VGMVDVIFSDVA  222 (264)
Q Consensus       211 ----~~~fD~V~~d~p  222 (264)
                          .+.+|+||.++.
T Consensus       123 ~~~~~g~iDilVnnAG  138 (346)
T 3kvo_A          123 AIKKFGGIDILVNNAS  138 (346)
T ss_dssp             HHHHHSCCCEEEECCC
T ss_pred             HHHHcCCCCEEEECCC
Confidence                147899998876

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=80.31  E-value=7  Score=33.03  Aligned_cols=79  Identities=15%  Similarity=0.158  Sum_probs=47.3

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChH-HHHHHHHHhh-cCCCeEEEEcCCCCchhhccc-------CC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHR-SGRDLVNMAK-KRTNVIPIIEDARHPAKYRML-------VG  212 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~-~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~~-------~~  212 (264)
                      .+.+||=.|+. +.+..++++.+- ...+|+.++.+.. ..+++.+... ...++.++..|+.+.......       .+
T Consensus        28 ~~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g  106 (283)
T 1g0o_A           28 EGKVALVTGAG-RGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFG  106 (283)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            35677766665 555555555442 3458999998843 2333222222 234799999999886432111       14


Q ss_pred             CccEEEEcCC
Q 024665          213 MVDVIFSDVA  222 (264)
Q Consensus       213 ~fD~V~~d~p  222 (264)
                      .+|+|+.+..
T Consensus       107 ~iD~lv~~Ag  116 (283)
T 1g0o_A          107 KLDIVCSNSG  116 (283)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6899998865

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=80.27  E-value=3.2  Score=35.28  Aligned_cols=80  Identities=16%  Similarity=0.183  Sum_probs=49.4

Q ss_pred             CCCEEEEEcccC-ChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-------CCC
Q 024665          143 PGARVLYLGAAS-GTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGM  213 (264)
Q Consensus       143 ~g~~VLDlG~G~-G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-------~~~  213 (264)
                      .+.+||=.|+++ +.+..++++.+- ...+|+.++.+++..+.+.+......++.++..|+.+.......       .+.
T Consensus        20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   99 (285)
T 2p91_A           20 EGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPKLEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEENWGS   99 (285)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            467899888873 666666665442 34589999988642112222222223578899999986532111       247


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      +|+|+.+..
T Consensus       100 iD~lv~~Ag  108 (285)
T 2p91_A          100 LDIIVHSIA  108 (285)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            899998875

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=80.21  E-value=6.2  Score=32.77  Aligned_cols=76  Identities=14%  Similarity=0.229  Sum_probs=45.7

Q ss_pred             CCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHH-hhcCCCeEEEEcCCCCchhhcccC-------CCc
Q 024665          144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNM-AKKRTNVIPIIEDARHPAKYRMLV-------GMV  214 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~-a~~~~nV~~i~~D~~~~~~~~~~~-------~~f  214 (264)
                      +.+||=.|+. |.+..++++.+- ...+|+.++.++.  ++..+. .....++.++..|+.+........       +.+
T Consensus         4 ~k~vlVTGas-~giG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   80 (255)
T 2q2v_A            4 GKTALVTGST-SGIGLGIAQVLARAGANIVLNGFGDP--APALAEIARHGVKAVHHPADLSDVAQIEALFALAEREFGGV   80 (255)
T ss_dssp             TCEEEESSCS-SHHHHHHHHHHHHTTCEEEEECSSCC--HHHHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHHHHSSC
T ss_pred             CCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCch--HHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence            4567766654 555666655442 3458999998753  122222 222347889999999865322111       378


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+|+.+..
T Consensus        81 d~lv~~Ag   88 (255)
T 2q2v_A           81 DILVNNAG   88 (255)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99998865

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=80.11  E-value=12  Score=31.82  Aligned_cols=62  Identities=16%  Similarity=0.080  Sum_probs=39.0

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEe-CChHHHHHHHHHhh--cCCCeEEEEcCCCCch
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVE-FSHRSGRDLVNMAK--KRTNVIPIIEDARHPA  205 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD-~s~~~~~~l~~~a~--~~~nV~~i~~D~~~~~  205 (264)
                      .+.+||=.|+.. .+...+++.+ ....+|+.++ .++..++++.+...  ...++.++..|+.+..
T Consensus         8 ~~k~~lVTGas~-GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~   73 (291)
T 1e7w_A            8 TVPVALVTGAAK-RLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVA   73 (291)
T ss_dssp             CCCEEEETTCSS-HHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSC
T ss_pred             CCCEEEEECCCc-hHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhhcCCeeEEEEeecCCcc
Confidence            356777667654 4555555443 2345899999 88655444443322  2347999999998865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	264
d1g8aa_	227	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro	3e-55
d1g8sa_	230	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth	2e-48
d1nt2a_	209	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch	2e-41
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	3e-07
d1i9ga_	264	c.66.1.13 (A:) Probable methyltransferase Rv2118c	2e-04
d1nkva_	245	c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric	5e-04
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	0.001
d1vqol1	150	c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {A	0.002
d2j01p1	146	c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {T	0.003

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score =  175 bits (445), Expect = 3e-55
 Identities = 84/160 (52%), Positives = 106/160 (66%), Gaps = 7/160 (4%)

Query: 69  VVVEPHRHEGVF--IAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRS 126
           V V+ H+  GV+  I     + + TKNLV G+ VY E+ I  + E     EYRIWNP RS
Sbjct: 2   VEVKKHKFPGVYTVIDDDGSERIATKNLVPGQRVYGERVIKWEGE-----EYRIWNPNRS 56

Query: 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN 186
           KL AA++ G+ N  IKPG  VLYLG ASGTT SHVSDIVG  G ++ +EFS R  R+LV 
Sbjct: 57  KLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVP 116

Query: 187 MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ 226
           + ++R N++PI+ DA  P +YR LV  VDVIF DVAQP Q
Sbjct: 117 IVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQ 156

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  158 bits (400), Expect = 2e-48
 Identities = 68/162 (41%), Positives = 105/162 (64%), Gaps = 8/162 (4%)

Query: 68  KVVVEPHRHEGVFIAKGKEDA--LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFR 125
           + +      E ++     +    + TK++V G+ VY+EK I + +E     EYRIWNP +
Sbjct: 2   EDIKIKEIFENIYEVDLGDGLKRIATKSIVKGKKVYDEKIIKIGDE-----EYRIWNPNK 56

Query: 126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLV 185
           SKLAAA++ G+  + IK  +++LYLGA++GTT SHV+DI    G+VYA+E++ R  R+L+
Sbjct: 57  SKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIA-DKGIVYAIEYAPRIMRELL 115

Query: 186 NMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQV 227
           +   +R N+IPI+ DA  P +Y  +V  VDVI+ DVAQP+Q 
Sbjct: 116 DACAERENIIPILGDANKPQEYANIVEKVDVIYEDVAQPNQA 157

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score =  139 bits (350), Expect = 2e-41
 Identities = 66/178 (37%), Positives = 96/178 (53%), Gaps = 25/178 (14%)

Query: 77  EGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGV 136
             V++    +D LVTK+       Y EK             YR W P+RSKLAA +L G 
Sbjct: 5   RNVYLL---DDTLVTKSKYGS--HYGEKVFD---------GYREWVPWRSKLAAMILKG- 49

Query: 137 DNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIP 196
             + ++   RVLYLGAASGTTVSH++DIV   G++YAVE+S +    L+ + ++R N+IP
Sbjct: 50  HRLKLRGDERVLYLGAASGTTVSHLADIV-DEGIIYAVEYSAKPFEKLLELVRERNNIIP 108

Query: 197 IIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCLILFQPIVINNLQSVNNETKGGI 254
           ++ DA  P KY  +V  VD+I+ D+AQ +Q           I+  N +    E    +
Sbjct: 109 LLFDASKPWKYSGIVEKVDLIYQDIAQKNQ---------IEILKANAEFFLKEKGEVV 157

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (114), Expect = 3e-07
 Identities = 24/100 (24%), Positives = 34/100 (34%), Gaps = 14/100 (14%)

Query: 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFS-------------HRSGRDLVNM 187
           I PG  VL  G+ SG     +S  VG  G V + E                R    L ++
Sbjct: 96  INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHV 155

Query: 188 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQV 227
            +   NV  I +D    A   +     D +  D+  P   
Sbjct: 156 EEWPDNVDFIHKDISG-ATEDIKSLTFDAVALDMLNPHVT 194

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 27/97 (27%), Positives = 36/97 (37%), Gaps = 16/97 (16%)

Query: 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT-------- 192
           I PGARVL  GA SG     +   VGP G V + E       D    A++          
Sbjct: 94  IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQR----ADHAEHARRNVSGCYGQPP 149

Query: 193 -NVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVC 228
            N   ++ D        +  G VD    D+  P +V 
Sbjct: 150 DNWRLVVSDLAD---SELPDGSVDRAVLDMLAPWEVL 183

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

 Score = 38.0 bits (87), Expect = 5e-04
 Identities = 19/109 (17%), Positives = 36/109 (33%), Gaps = 3/109 (2%)

Query: 117 EYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEF 176
           E+RI NPF  +  A +      + +KPG R+L LG+ SG  +   +   G  G    +  
Sbjct: 10  EHRIHNPFTEEKYATLG---RVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSS 66

Query: 177 SHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPD 225
              +           +  +  I +            +   + +      
Sbjct: 67  LFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGATWIAGG 115

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 7/90 (7%)

Query: 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPI 197
           ++PG  +L +G  SG   S++   +   G +  VE       D +  A         I  
Sbjct: 83  LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERD----EDNLKKAMDNLSEFYDIGN 138

Query: 198 IEDARHPAKYRMLVGMVDVIFSDVAQPDQV 227
           +  +R      +   M D + +D+  P   
Sbjct: 139 VRTSRSDIADFISDQMYDAVIADIPDPWNH 168

>d1vqol1 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 150

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 35.8 bits (82), Expect = 0.002
 Identities = 19/103 (18%), Positives = 25/103 (24%), Gaps = 2/103 (1%)

Query: 14  RGGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGRGGGRGRGGGGMKGGSKVVVEP 73
           RG R  GGG      R G G RGG                 G+       K   +     
Sbjct: 8   RGSRTHGGGSH--KNRRGAGHRGGRGDAGRDKHEFHNHEPLGKSGFKRPQKVQEEAATID 65

Query: 74  HRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKV 116
            R     +     D +             +      + D  KV
Sbjct: 66  VREIDENVTLLAADDVAEVEDGGFRVDVRDVVEEADDADYVKV 108

>d2j01p1 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermus thermophilus [TaxId: 274]} Length = 146

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Thermus thermophilus [TaxId: 274]

 Score = 35.0 bits (80), Expect = 0.003
 Identities = 12/39 (30%), Positives = 16/39 (41%)

Query: 14 RGGRGDGGGRGRGGGRGGGGGRGGGSAMRGRGGGRGGGR 52
          R GRG G G G+   RG  G +     ++      GG  
Sbjct: 14 RVGRGPGSGHGKTATRGHKGQKSRSGGLKDPRRFEGGRS 52

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	264
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	100.0
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.97
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.89
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.84
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.79
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.78
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.77
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.51
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.48
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	99.46
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.46
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	99.45
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.43
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.41
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.37
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.34
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.34
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.33
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.33
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.32
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	99.32
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.32
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.31
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.27
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.26
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.25
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.23
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.22
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.21
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.2
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.2
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.19
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.19
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.17
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.17
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.16
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.16
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.14
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.14
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.13
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.12
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.12
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.1
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.1
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.09
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.08
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.07
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.06
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.04
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.03
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.03
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	99.03
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.02
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.01
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	98.99
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	98.99
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.97
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	98.96
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	98.95
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	98.94
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	98.93
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.93
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.92
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	98.92
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.87
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	98.82
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	98.8
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.79
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.78
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.78
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	98.72
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.68
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.63
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.62
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.6
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.58
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.55
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.54
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.46
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.32
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.26
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	98.25
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.22
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.22
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.18
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.1
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.04
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.03
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.02
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.0
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.95
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	97.9
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	97.84
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.78
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	97.74
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.73
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	97.68
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	97.64
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	97.49
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	97.49
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	97.34
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	97.14
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	96.73
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	96.72
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	96.67
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	96.52
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	95.55
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	95.52
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	95.5
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	95.17
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	94.95
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	94.94
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	94.44
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	94.08
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	93.62
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	93.61
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	93.57
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	93.28
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	93.09
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	93.07
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	92.53
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	92.5
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	92.31
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	91.8
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	91.79
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	91.73
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	90.67
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	90.61
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	90.43
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	90.35
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	90.16
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	89.97
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	89.84
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	89.81
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	89.68
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	89.59
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	89.31
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	89.19
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	88.88
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	88.79
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	88.76
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	88.39
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	88.19
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	88.05
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	87.65
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	87.54
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	87.51
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	87.4
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	87.4
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	87.35
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	87.26
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	87.09
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	87.01
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	86.57
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	86.49
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	86.4
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	86.0
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	85.91
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	85.8
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	85.6
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	85.59
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	85.13
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	84.74
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	84.54
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	84.42
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	84.31
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	84.3
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	84.16
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	84.01
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	83.67
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	83.47
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	83.23
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	82.24
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	82.01
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	81.89
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	80.63
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	80.62
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	80.45
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	80.15

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=6e-34  Score=244.40  Aligned_cols=160  Identities=52%  Similarity=0.808  Sum_probs=145.1

Q ss_pred             eeecceeeceEEEec--CCcccccccccCCCceeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCCCE
Q 024665           69 VVVEPHRHEGVFIAK--GKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGAR  146 (264)
Q Consensus        69 ~~i~~~~~~g~~~~~--~~~d~l~~~~~~~g~~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~~  146 (264)
                      |+|+||+|+|+|+.+  ++.+.|+|+|++||+++|+|+++..+.     .+||.|+||+||+++.|+..++++.++||++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~l~t~n~~~g~~vyge~~~~~~~-----~e~R~w~p~rSKlaa~i~~~l~~l~i~pG~~   76 (227)
T d1g8aa_           2 VEVKKHKFPGVYTVIDDDGSERIATKNLVPGQRVYGERVIKWEG-----EEYRIWNPNRSKLGAAIMNGLKNFPIKPGKS   76 (227)
T ss_dssp             CEEEECSSTTEEEEECSSSCSEEEEECSSTTCCCTTCCEEEETT-----EEEEECCTTTCHHHHHHHTTCCCCCCCTTCE
T ss_pred             cEEeecccCceEEEEeCCCceEEEEecCCCCCcccCceEEEcCC-----eeEEEECCCccHHHHHHHccccccccCCCCE
Confidence            689999999999876  456789999999999999999888765     4899999999999999999999999999999


Q ss_pred             EEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCCCchH
Q 024665          147 VLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ  226 (264)
Q Consensus       147 VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~~~~  226 (264)
                      |||+|||+|+++++||+.++++++|||||+|+++++++.+.+..+.|+.+++.|+.++..+.....++|+|++|++++++
T Consensus        77 VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~d~~~~~~  156 (227)
T d1g8aa_          77 VLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQ  156 (227)
T ss_dssp             EEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECCCSTTH
T ss_pred             EEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEEEccccch
Confidence            99999999999999999999999999999999999999999888889999999999988776677899999999998876


Q ss_pred             HHHHHHH
Q 024665          227 VCFLCLI  233 (264)
Q Consensus       227 ~~~~~~~  233 (264)
                      ......+
T Consensus       157 ~~~~l~~  163 (227)
T d1g8aa_         157 AKILIDN  163 (227)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5544433

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.97  E-value=8.5e-31  Score=225.12  Aligned_cols=154  Identities=44%  Similarity=0.746  Sum_probs=136.8

Q ss_pred             ceeeceEEEecCCc--ccccccccCCCceeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCCCEEEEE
Q 024665           73 PHRHEGVFIAKGKE--DALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYL  150 (264)
Q Consensus        73 ~~~~~g~~~~~~~~--d~l~~~~~~~g~~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~~VLDl  150 (264)
                      +|.++|+|+.+.++  +.|+|+|++||+++|+|+.+..+.     .+||.|+|++|+|++.|+..++++.++|+++||||
T Consensus         7 ~~~~~~~~~~~~~~~~~~l~t~~~~~g~~~y~e~~~~~~~-----~e~r~w~p~rsklaA~i~~gl~~l~ikpG~~VLDl   81 (230)
T d1g8sa_           7 KEIFENIYEVDLGDGLKRIATKSIVKGKKVYDEKIIKIGD-----EEYRIWNPNKSKLAAAIIKGLKVMPIKRDSKILYL   81 (230)
T ss_dssp             EEETTTEEEEECSSSCCEEEEECSSTTCCSSSCCEEEETT-----EEEEECCTTTCHHHHHHHTTCCCCCCCTTCEEEEE
T ss_pred             ccccCceEEEEcCCCceeeEecCCCCCCCccCceeeecCC-----ceeeeECCCccHHHHHHHhhHHhCCCCCCCEEEEe
Confidence            57999999999765  459999999999999999988754     58999999999999999999999999999999999


Q ss_pred             cccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCCCchHHHHH
Q 024665          151 GAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFL  230 (264)
Q Consensus       151 G~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~~~~~~~~  230 (264)
                      |||+|++++++|+.+ +.+.|||||+|++|++++.+.+..++|+.++..|+.++..+......+|+++++..++++....
T Consensus        82 GcGsG~~~~~la~~~-~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~  160 (230)
T d1g8sa_          82 GASAGTTPSHVADIA-DKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDVAQPNQAEIL  160 (230)
T ss_dssp             SCCSSHHHHHHHHHT-TTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEECCCSTTHHHHH
T ss_pred             CEEcCHHHHHHHHhC-CCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeeccccchHHHHHH
Confidence            999999999999974 6889999999999999999999888999999999999887766566788888998876665544


Q ss_pred             HH
Q 024665          231 CL  232 (264)
Q Consensus       231 ~~  232 (264)
                      ..
T Consensus       161 l~  162 (230)
T d1g8sa_         161 IK  162 (230)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.89  E-value=7e-23  Score=172.88  Aligned_cols=146  Identities=44%  Similarity=0.733  Sum_probs=120.7

Q ss_pred             ceEEEecCCcccccccccCCCceeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCCCEEEEEcccCCh
Q 024665           77 EGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGT  156 (264)
Q Consensus        77 ~g~~~~~~~~d~l~~~~~~~g~~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~  156 (264)
                      +++|+..   +.|+|++..+  +.|+|+.+         .+||.|+|++|++++.++.. .++.++|+++|||+|||+|+
T Consensus         5 ~~~~~~~---~~l~~~~~~~--~~~~e~~~---------~~~r~w~p~rsklaa~i~~g-~~l~lkpg~~VLDlGcG~G~   69 (209)
T d1nt2a_           5 RNVYLLD---DTLVTKSKYG--SHYGEKVF---------DGYREWVPWRSKLAAMILKG-HRLKLRGDERVLYLGAASGT   69 (209)
T ss_dssp             TTEEEET---TEEEEECSCC--CSSSCCEE---------TTEEECCGGGCHHHHHHHTS-CCCCCCSSCEEEEETCTTSH
T ss_pred             cCeEEec---cEeEEecCCc--ccCCceec---------cceeeeCCcchHHHHHHhcc-ccCCCCCCCEEEEeCCcCCH
Confidence            5788873   6789998554  47888742         26999999999999999876 55789999999999999999


Q ss_pred             HHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCCCchHHHHH---HHH
Q 024665          157 TVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFL---CLI  233 (264)
Q Consensus       157 ~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~~~~~~~~---~~~  233 (264)
                      ++.++|+++ ++++|||||+|++|++.+.+.+..+.|+.+++.|+.++..+......+|+|++|.+++++....   ...
T Consensus        70 ~~~~la~~v-~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~~~~~~~~~~~l~~~~~  148 (209)
T d1nt2a_          70 TVSHLADIV-DEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEF  148 (209)
T ss_dssp             HHHHHHHHT-TTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECCCSTTHHHHHHHHHHH
T ss_pred             HHHHHHHhc-cCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEecccChhhHHHHHHHHHH
Confidence            999999998 5679999999999999999988888899999999999877666667899999999877655443   334


Q ss_pred             HhCCC
Q 024665          234 LFQPI  238 (264)
Q Consensus       234 ~l~~~  238 (264)
                      .++|+
T Consensus       149 ~Lkpg  153 (209)
T d1nt2a_         149 FLKEK  153 (209)
T ss_dssp             HEEEE
T ss_pred             HhccC
Confidence            44554

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.84  E-value=1.4e-20  Score=163.80  Aligned_cols=160  Identities=24%  Similarity=0.252  Sum_probs=131.8

Q ss_pred             cccccccccCCCceeeeee--EEEEecCCCceecceEeCCcc-----hHHHHHHHhcccccCCCCCCEEEEEcccCChHH
Q 024665           86 EDALVTKNLVAGEAVYNEK--RISVQNEDGTKVEYRIWNPFR-----SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTV  158 (264)
Q Consensus        86 ~d~l~~~~~~~g~~vy~e~--~~~v~~~~~~~~~yr~~~p~~-----s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s  158 (264)
                      +|+++.++  +|+.+...+  .+.+..|  +..+|....+++     ++.++.|+..++   ++||++|||+|||||++|
T Consensus        39 h~~iiGk~--~G~~v~t~~g~~~~v~~p--t~~~~~~~~~r~tqiiypkD~s~Ii~~l~---i~PG~~VLE~G~GsG~lt  111 (264)
T d1i9ga_          39 HDAVIGLE--QGSVVKSSNGALFLVLRP--LLVDYVMSMPRGPQVIYPKDAAQIVHEGD---IFPGARVLEAGAGSGALT  111 (264)
T ss_dssp             HHHHTTCC--TTEEEECSSCCEEEEECC--CHHHHHTTSCSCSCCCCHHHHHHHHHHTT---CCTTCEEEEECCTTSHHH
T ss_pred             HHHhcCCC--CCeEEEeCCCCEEEEeCC--CHHHHHhhccCCccccchHHHHHHHHHhC---CCCCCEEEecCcCCcHHH
Confidence            46788877  788888764  5666677  777887666655     788888887777   999999999999999999


Q ss_pred             HHHHHHhCCCCEEEEEeCChHHHHHHHHHhh-----cCCCeEEEEcCCCCchhhcccCCCccEEEEcCCCchHHHHHHHH
Q 024665          159 SHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK-----KRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCLI  233 (264)
Q Consensus       159 ~~la~~~~~~g~V~avD~s~~~~~~l~~~a~-----~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~~~~~~~~~~~  233 (264)
                      ++||..++|.++||++|+++++++.+.++..     ...|+++++.|+.+..   ...+.||+||+|+|.||++.....+
T Consensus       112 ~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~---~~~~~fDaV~ldlp~P~~~l~~~~~  188 (264)
T d1i9ga_         112 LSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE---LPDGSVDRAVLDMLAPWEVLDAVSR  188 (264)
T ss_dssp             HHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC---CCTTCEEEEEEESSCGGGGHHHHHH
T ss_pred             HHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccccc---ccCCCcceEEEecCCHHHHHHHHHh
Confidence            9999999999999999999887655544332     1349999999998753   2357899999999999999999999


Q ss_pred             HhCCC--------cHHHHHHHHHHhh-cchh
Q 024665          234 LFQPI--------VINNLQSVNNETK-GGIF  255 (264)
Q Consensus       234 ~l~~~--------~~~~l~~~~~~Lk-~g~f  255 (264)
                      .++|+        +.+|+++++++|+ .+.|
T Consensus       189 ~LkpGG~lv~~~P~i~Qv~~~~~~l~~~~~f  219 (264)
T d1i9ga_         189 LLVAGGVLMVYVATVTQLSRIVEALRAKQCW  219 (264)
T ss_dssp             HEEEEEEEEEEESSHHHHHHHHHHHHHHSSB
T ss_pred             ccCCCCEEEEEeCccChHHHHHHHHHHcCCe
Confidence            99988        8889999999997 4444

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.6e-19  Score=161.38  Aligned_cols=159  Identities=19%  Similarity=0.157  Sum_probs=127.5

Q ss_pred             CcccccccccCCCceeeeee--EEEEecCCCceecceEeCCcc-----hHHHHHHHhcccccCCCCCCEEEEEcccCChH
Q 024665           85 KEDALVTKNLVAGEAVYNEK--RISVQNEDGTKVEYRIWNPFR-----SKLAAAVLGGVDNIWIKPGARVLYLGAASGTT  157 (264)
Q Consensus        85 ~~d~l~~~~~~~g~~vy~e~--~~~v~~~~~~~~~yr~~~p~~-----s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~  157 (264)
                      +++.++.+.  +|+.+...+  .+.+..|  +..+|....|+.     ++.++.|+..++   ++||++|||+|||+|.+
T Consensus        40 ~h~~iiGk~--~G~~v~~~~g~~~~v~~P--t~~d~~~~~~r~tqiiypkD~~~Il~~l~---i~pG~rVLE~GtGsG~l  112 (324)
T d2b25a1          40 PFGKIVGKF--PGQILRSSFGKQYMLRRP--ALEDYVVLMKRGTAITFPKDINMILSMMD---INPGDTVLEAGSGSGGM  112 (324)
T ss_dssp             BHHHHTTCC--TTEEEECTTSCEEEEECC--CHHHHHHHSCCSSCCCCHHHHHHHHHHHT---CCTTCEEEEECCTTSHH
T ss_pred             eHHHhcCCC--CCcEEEeCCCCEEEEeCC--CHHHHhhccCCCCcccccccHHHHHHHhC---CCCCCEEEEecccccHH
Confidence            456788877  888887653  6667788  888888877776     788999988777   99999999999999999


Q ss_pred             HHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh-------------cCCCeEEEEcCCCCchhhcccCCCccEEEEcCCCc
Q 024665          158 VSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK-------------KRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQP  224 (264)
Q Consensus       158 s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~-------------~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~~  224 (264)
                      |++||..+++.++||++|+++++++.+.++..             ...||.+++.|+.+.... .....||+||+|+|.|
T Consensus       113 t~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~-~~~~~fD~V~LD~p~P  191 (324)
T d2b25a1         113 SLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED-IKSLTFDAVALDMLNP  191 (324)
T ss_dssp             HHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--------EEEEEECSSST
T ss_pred             HHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcccc-cCCCCcceEeecCcCH
Confidence            99999999999999999999877544433221             124899999999875421 2335799999999999


Q ss_pred             hHHHHHHHHHhCCC--------cHHHHHHHHHHhh
Q 024665          225 DQVCFLCLILFQPI--------VINNLQSVNNETK  251 (264)
Q Consensus       225 ~~~~~~~~~~l~~~--------~~~~l~~~~~~Lk  251 (264)
                      |.+.....+.|+|+        +++|++.++++|+
T Consensus       192 ~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~  226 (324)
T d2b25a1         192 HVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIR  226 (324)
T ss_dssp             TTTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCEEEEEeCCHHHHHHHHHHHH
Confidence            99999999999988        7889999999987

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.78  E-value=1.4e-18  Score=151.28  Aligned_cols=157  Identities=19%  Similarity=0.174  Sum_probs=128.4

Q ss_pred             cccccccccCCCceeeeee--EEEEecCCCceecceEeCCcc-----hHHHHHHHhcccccCCCCCCEEEEEcccCChHH
Q 024665           86 EDALVTKNLVAGEAVYNEK--RISVQNEDGTKVEYRIWNPFR-----SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTV  158 (264)
Q Consensus        86 ~d~l~~~~~~~g~~vy~e~--~~~v~~~~~~~~~yr~~~p~~-----s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s  158 (264)
                      .++++.+.  +|+.+...+  .+.+..|  +..+|....|+.     ++.++.|+..++   ++|+++|||+|||+|.+|
T Consensus        46 ~~~iig~~--~G~~v~~~~g~~~~~~~p--~~~d~~~~~~r~~qiiypkd~~~Ii~~l~---i~pG~~VLDiG~GsG~lt  118 (266)
T d1o54a_          46 LNEVFEKG--PGEIIRTSAGKKGYILIP--SLIDEIMNMKRRTQIVYPKDSSFIAMMLD---VKEGDRIIDTGVGSGAMC  118 (266)
T ss_dssp             HHHHTTSC--TTCEEECTTCCEEEEECC--CHHHHHHTCCC-CCCCCHHHHHHHHHHTT---CCTTCEEEEECCTTSHHH
T ss_pred             HHHhcCCC--CCeEEEecCCCeEEEECC--CHHHHHhhccCCccccchHHHHHHHHhhC---CCCCCEEEECCCCCCHHH
Confidence            46788877  898887653  6777778  778887655554     789999988877   999999999999999999


Q ss_pred             HHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcccCCCccEEEEcCCCchHHHHHHHHHh
Q 024665          159 SHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCLILF  235 (264)
Q Consensus       159 ~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~~~~~~~~~~~~l  235 (264)
                      ..||+.+++.++|+++|+++++++.+.++...   ..++.+.+.|+.+..    ....||.|+.|+|.|++........+
T Consensus       119 ~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~----~~~~~D~V~~d~p~p~~~l~~~~~~L  194 (266)
T d1o54a_         119 AVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGF----DEKDVDALFLDVPDPWNYIDKCWEAL  194 (266)
T ss_dssp             HHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCC----SCCSEEEEEECCSCGGGTHHHHHHHE
T ss_pred             HHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccc----cccceeeeEecCCCHHHHHHHHHhhc
Confidence            99999999999999999998886655554433   248888888875432    24689999999999999999999999


Q ss_pred             CCC--------cHHHHHHHHHHhh-cc
Q 024665          236 QPI--------VINNLQSVNNETK-GG  253 (264)
Q Consensus       236 ~~~--------~~~~l~~~~~~Lk-~g  253 (264)
                      +|+        +.+|++++++.|+ .+
T Consensus       195 KpGG~lv~~~P~~~Qv~~~~~~l~~~g  221 (266)
T d1o54a_         195 KGGGRFATVCPTTNQVQETLKKLQELP  221 (266)
T ss_dssp             EEEEEEEEEESSHHHHHHHHHHHHHSS
T ss_pred             CCCCEEEEEeCcccHHHHHHHHHHHCC
Confidence            988        7788999999998 44

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.77  E-value=1.9e-18  Score=149.04  Aligned_cols=151  Identities=14%  Similarity=0.123  Sum_probs=112.6

Q ss_pred             CCceeeeee-EEEEecCCCceecceEeCCcc-----hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCC
Q 024665           96 AGEAVYNEK-RISVQNEDGTKVEYRIWNPFR-----SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNG  169 (264)
Q Consensus        96 ~g~~vy~e~-~~~v~~~~~~~~~yr~~~p~~-----s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g  169 (264)
                      |++.+-..+ .+++..|  +..+|....++.     ++.++.|+..++   ++||++|||+|||||.+|+.||+.+++.+
T Consensus        37 ~g~~~~~~g~~~~i~~p--~~~~~~~~~~r~~qiiypkD~~~Ii~~l~---i~pG~rVLEiG~GsG~lt~~la~~v~~~g  111 (250)
T d1yb2a1          37 PGDELIVSGKSFIVSDF--SPMYFGRVIRRNTQIISEIDASYIIMRCG---LRPGMDILEVGVGSGNMSSYILYALNGKG  111 (250)
T ss_dssp             TTCEEEETTEEEEEECC--CGGGHHHHC------------------CC---CCTTCEEEEECCTTSHHHHHHHHHHTTSS
T ss_pred             CccEEEECCeEEEEECC--CHHHHHhhCCCCCcccCHHHHHHHHHHcC---CCCcCEEEEeeeeCcHHHHHHHHHhCCCc
Confidence            565444332 5667777  777777766666     566777776665   99999999999999999999999999999


Q ss_pred             EEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcccCCCccEEEEcCCCchHHHHHHHHHhCCC--------
Q 024665          170 VVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCLILFQPI--------  238 (264)
Q Consensus       170 ~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~~~~~~~~~~~~l~~~--------  238 (264)
                      +|+++|+++.+++.+.++...   ..||++++.|+.+..    ....||+|++|+|.||.......+.++|+        
T Consensus       112 ~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~----~~~~fD~V~ld~p~p~~~l~~~~~~LKpGG~lv~~~P  187 (250)
T d1yb2a1         112 TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFI----SDQMYDAVIADIPDPWNHVQKIASMMKPGSVATFYLP  187 (250)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCC----CSCCEEEEEECCSCGGGSHHHHHHTEEEEEEEEEEES
T ss_pred             EEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeeccc----ccceeeeeeecCCchHHHHHHHHHhcCCCceEEEEeC
Confidence            999999999887666555433   249999999998753    24689999999999999999999999988        


Q ss_pred             cHHHHHHHHHHhhcchh
Q 024665          239 VINNLQSVNNETKGGIF  255 (264)
Q Consensus       239 ~~~~l~~~~~~Lk~g~f  255 (264)
                      +.+|++.++++|+...|
T Consensus       188 ~i~Qv~~~~~~l~~~gf  204 (250)
T d1yb2a1         188 NFDQSEKTVLSLSASGM  204 (250)
T ss_dssp             SHHHHHHHHHHSGGGTE
T ss_pred             CcChHHHHHHHHHHCCC
Confidence            67889999999983334

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.51  E-value=1.9e-14  Score=123.97  Aligned_cols=116  Identities=16%  Similarity=0.176  Sum_probs=81.6

Q ss_pred             chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC-CeEEEEcCCCC
Q 024665          125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT-NVIPIIEDARH  203 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~-nV~~i~~D~~~  203 (264)
                      ++.++...+..    .++|+++|||+|||+|.+++.++..   ..+|+|+|+|+.|++.+.+++..+. ++++++.|+.+
T Consensus       106 TT~l~l~~l~~----~~~~g~~VLDiGcGsG~l~i~aa~~---g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~  178 (254)
T d2nxca1         106 TTRLALKALAR----HLRPGDKVLDLGTGSGVLAIAAEKL---GGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA  178 (254)
T ss_dssp             HHHHHHHHHHH----HCCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH
T ss_pred             hhhHHHHHHHh----hcCccCEEEEcccchhHHHHHHHhc---CCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccc
Confidence            67777776632    4689999999999999999988764   3589999999988777666665443 77899999765


Q ss_pred             chhhcccCCCccEEEEcCCCch--HHHHHHHHHhCCC--------cHHHHHHHHHHhh
Q 024665          204 PAKYRMLVGMVDVIFSDVAQPD--QVCFLCLILFQPI--------VINNLQSVNNETK  251 (264)
Q Consensus       204 ~~~~~~~~~~fD~V~~d~p~~~--~~~~~~~~~l~~~--------~~~~l~~~~~~Lk  251 (264)
                      ..    ..++||+|+++.....  .........++|+        ...+...+.+.++
T Consensus       179 ~~----~~~~fD~V~ani~~~~l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~  232 (254)
T d2nxca1         179 AL----PFGPFDLLVANLYAELHAALAPRYREALVPGGRALLTGILKDRAPLVREAMA  232 (254)
T ss_dssp             HG----GGCCEEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHH
T ss_pred             cc----cccccchhhhccccccHHHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHH
Confidence            43    2468999999977322  2223344556665        3345555555555

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.48  E-value=1.1e-13  Score=113.22  Aligned_cols=118  Identities=9%  Similarity=0.055  Sum_probs=83.8

Q ss_pred             chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCC
Q 024665          125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDA  201 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~  201 (264)
                      +..+-+.++..+.   ++|+++|||+|||+|.+++.+|..   .++||++|+++.+++.+.++++.   .+||+++++|+
T Consensus        18 ~~eir~~il~~l~---~~~g~~VLDiGcGsG~~s~~lA~~---~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda   91 (186)
T d1l3ia_          18 AMEVRCLIMCLAE---PGKNDVAVDVGCGTGGVTLELAGR---VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDA   91 (186)
T ss_dssp             CHHHHHHHHHHHC---CCTTCEEEEESCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCH
T ss_pred             hHHHHHHHHHhcC---CCCCCEEEEEECCeEccccccccc---ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECch
Confidence            3344444554444   999999999999999999999875   35999999999887665555443   35999999998


Q ss_pred             CCchhhcccCCCccEEEEcCCC--chHHHHHHHHHhCCC--------cHHHHHHHHHHhh
Q 024665          202 RHPAKYRMLVGMVDVIFSDVAQ--PDQVCFLCLILFQPI--------VINNLQSVNNETK  251 (264)
Q Consensus       202 ~~~~~~~~~~~~fD~V~~d~p~--~~~~~~~~~~~l~~~--------~~~~l~~~~~~Lk  251 (264)
                      .+...   ....||+|+++.+.  ...........++|.        ..+....+.+.++
T Consensus        92 ~~~~~---~~~~~D~v~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~~~~l~  148 (186)
T d1l3ia_          92 PEALC---KIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLR  148 (186)
T ss_dssp             HHHHT---TSCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHH
T ss_pred             hhccc---ccCCcCEEEEeCccccchHHHHHHHHHhCcCCEEEEEeeccccHHHHHHHHH
Confidence            77642   34689999999873  334444455566666        2445555555555

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.46  E-value=5.1e-14  Score=124.76  Aligned_cols=102  Identities=25%  Similarity=0.268  Sum_probs=84.1

Q ss_pred             eeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCCh
Q 024665           99 AVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSH  178 (264)
Q Consensus        99 ~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~  178 (264)
                      ..|.++.+++|++             +|++++.++      .++|+++|||+||++|.+|+++++.+...+.|+|+|+++
T Consensus        91 ~~~~~G~~~vQD~-------------aS~l~~~~l------~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~  151 (313)
T d1ixka_          91 PEFLTGLIYIQEA-------------SSMYPPVAL------DPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDE  151 (313)
T ss_dssp             HHHHTTSEEECCH-------------HHHHHHHHH------CCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCH
T ss_pred             HhhhhceEEEecc-------------cccchhhcc------cCCccceeeecccchhhhhHhhhhhcccccceeeeccCH
Confidence            3678889999997             889988887      589999999999999999999999999999999999996


Q ss_pred             HHHHHHHHHhhc--CCCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665          179 RSGRDLVNMAKK--RTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       179 ~~~~~l~~~a~~--~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      .-++.+.+....  ..||.+++.|.+++..   ....||.|++|+|
T Consensus       152 ~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~---~~~~fD~ILvDaP  194 (313)
T d1ixka_         152 NRLRETRLNLSRLGVLNVILFHSSSLHIGE---LNVEFDKILLDAP  194 (313)
T ss_dssp             HHHHHHHHHHHHHTCCSEEEESSCGGGGGG---GCCCEEEEEEECC
T ss_pred             HHHHHHHHHHHHHHhhcccccccccccccc---ccccccEEEEccc
Confidence            554444443332  2489999999877653   4568999999999

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.46  E-value=1.3e-13  Score=116.13  Aligned_cols=93  Identities=18%  Similarity=0.086  Sum_probs=72.3

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc--CCCeEEEEcCCCCchhhcccCCCccEE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--RTNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~--~~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      .++|+++|||+|||+|.++..|++..   .+|++||+|+.|++.+.+.+..  ..|+.++++|+.+.+   ...++||+|
T Consensus        13 ~~~~~~rILDiGcGtG~~~~~la~~~---~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD~v   86 (234)
T d1xxla_          13 ECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP---FPDDSFDII   86 (234)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCC---SCTTCEEEE
T ss_pred             CCCCCCEEEEeCCcCcHHHHHHHHhC---CeEEEEeCChhhhhhhhhhhccccccccccccccccccc---cccccccee
Confidence            59999999999999999999999874   4899999999887766666543  248999999998854   345799999


Q ss_pred             EEcCC-----CchHHHHHHHHHhCCC
Q 024665          218 FSDVA-----QPDQVCFLCLILFQPI  238 (264)
Q Consensus       218 ~~d~p-----~~~~~~~~~~~~l~~~  238 (264)
                      ++...     .|..........++|+
T Consensus        87 ~~~~~l~~~~d~~~~l~~~~r~Lkpg  112 (234)
T d1xxla_          87 TCRYAAHHFSDVRKAVREVARVLKQD  112 (234)
T ss_dssp             EEESCGGGCSCHHHHHHHHHHHEEEE
T ss_pred             eeeceeecccCHHHHHHHHHHeeCCC
Confidence            98654     3444555555555555

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.7e-13  Score=118.93  Aligned_cols=106  Identities=20%  Similarity=0.244  Sum_probs=85.5

Q ss_pred             eeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCCh
Q 024665           99 AVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSH  178 (264)
Q Consensus        99 ~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~  178 (264)
                      ..|.++.+++|++             +|++++.++      .++++++|||+||++|++|++||+++.+.++|+|+|+++
T Consensus        69 ~~~~~G~~~~QD~-------------sS~l~~~~L------~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~  129 (293)
T d2b9ea1          69 PLYRAGHLILQDR-------------ASCLPAMLL------DPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDA  129 (293)
T ss_dssp             HHHHTTSEEECCT-------------GGGHHHHHH------CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             hHHhCcEEEEcCC-------------ccccccccc------CCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCH
Confidence            3678889999998             889988887      588999999999999999999999999999999999996


Q ss_pred             HHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEEcCCC
Q 024665          179 RSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       179 ~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~  223 (264)
                      .-++.+.+.....  .|+.+.+.|.++..........||.|++|+|+
T Consensus       130 ~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL~DaPC  176 (293)
T d2b9ea1         130 KRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSC  176 (293)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEECCCC
T ss_pred             HHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEeecCcc
Confidence            5444544444332  38999999988765432233689999999994

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.43  E-value=3.9e-13  Score=112.56  Aligned_cols=92  Identities=28%  Similarity=0.360  Sum_probs=74.8

Q ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc--CCCeEEEEcCCCC
Q 024665          126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--RTNVIPIIEDARH  203 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~--~~nV~~i~~D~~~  203 (264)
                      +.+.+.++..++   ++|+++|||+|||+|+++..||+.+++.++|+++|+++.+++.+.+....  ..|+.++++|+.+
T Consensus        61 P~~~a~~l~~l~---l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~  137 (213)
T d1dl5a1          61 PSLMALFMEWVG---LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYY  137 (213)
T ss_dssp             HHHHHHHHHHTT---CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG
T ss_pred             chhhHHHHHhhh---ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHH
Confidence            466666766665   99999999999999999999999999999999999999887665555443  2489999999877


Q ss_pred             chhhcccCCCccEEEEcCCC
Q 024665          204 PAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       204 ~~~~~~~~~~fD~V~~d~p~  223 (264)
                      ...   ..++||+|+++...
T Consensus       138 ~~~---~~~~fD~I~~~~~~  154 (213)
T d1dl5a1         138 GVP---EFSPYDVIFVTVGV  154 (213)
T ss_dssp             CCG---GGCCEEEEEECSBB
T ss_pred             ccc---cccchhhhhhhccH
Confidence            542   24689999998763

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=5.6e-13  Score=113.06  Aligned_cols=112  Identities=23%  Similarity=0.141  Sum_probs=81.7

Q ss_pred             ceEeCCcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---CCCe
Q 024665          118 YRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNV  194 (264)
Q Consensus       118 yr~~~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~~nV  194 (264)
                      ++...|+.+.....+...+.   ++|+++|||||||+|.++..+++..  ..+|++||+|+.+++...+.+..   ..+|
T Consensus        11 h~~~~p~~~~~~~~l~~~~~---l~pg~~VLDiGCG~G~~~~~la~~~--~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v   85 (245)
T d1nkva_          11 HRIHNPFTEEKYATLGRVLR---MKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERV   85 (245)
T ss_dssp             CSSSSSCCHHHHHHHHHHTC---CCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTE
T ss_pred             ccccCCCCHHHHHHHHHHcC---CCCCCEEEEEcCCCCHHHHHHHHhc--CCEEEEEecccchhhHHHHHHHHhhccccc
Confidence            44446777777777765555   9999999999999999999999874  36899999999887655554433   3479


Q ss_pred             EEEEcCCCCchhhcccCCCccEEEEcCC-----CchHHHHHHHHHhCCC
Q 024665          195 IPIIEDARHPAKYRMLVGMVDVIFSDVA-----QPDQVCFLCLILFQPI  238 (264)
Q Consensus       195 ~~i~~D~~~~~~~~~~~~~fD~V~~d~p-----~~~~~~~~~~~~l~~~  238 (264)
                      +++++|+.++.    ..++||+|++.-.     .+..........++|+
T Consensus        86 ~~~~~d~~~~~----~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPG  130 (245)
T d1nkva_          86 HFIHNDAAGYV----ANEKCDVAACVGATWIAGGFAGAEELLAQSLKPG  130 (245)
T ss_dssp             EEEESCCTTCC----CSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEE
T ss_pred             hhhhhHHhhcc----ccCceeEEEEEehhhccCCHHHHHHHHHHHcCcC
Confidence            99999998863    3478999997544     3444444444444543

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.37  E-value=1.2e-12  Score=109.34  Aligned_cols=93  Identities=13%  Similarity=0.118  Sum_probs=72.0

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc--CCCeEEEEcCCCCchhhcccCCCccEE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--RTNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~--~~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      .++++++|||||||+|.++..+++..   .+|+|+|+|+.+++.+.+....  .+|++++++|+++.+   ...++||+|
T Consensus        12 ~l~~~~rVLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~---~~~~~fD~v   85 (231)
T d1vl5a_          12 ALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP---FTDERFHIV   85 (231)
T ss_dssp             TCCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCC---SCTTCEEEE
T ss_pred             CCCCcCEEEEecccCcHHHHHHHHhC---CEEEEEECCHHHHhhhhhccccccccccccccccccccc---ccccccccc
Confidence            59999999999999999999999773   4899999999887666554433  358999999999865   245799999


Q ss_pred             EEcCC-----CchHHHHHHHHHhCCC
Q 024665          218 FSDVA-----QPDQVCFLCLILFQPI  238 (264)
Q Consensus       218 ~~d~p-----~~~~~~~~~~~~l~~~  238 (264)
                      ++...     .+..........++|+
T Consensus        86 ~~~~~l~~~~d~~~~l~~~~r~Lkpg  111 (231)
T d1vl5a_          86 TCRIAAHHFPNPASFVSEAYRVLKKG  111 (231)
T ss_dssp             EEESCGGGCSCHHHHHHHHHHHEEEE
T ss_pred             cccccccccCCHHHHHHHHHHhcCCC
Confidence            98654     4555556666666665

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.6e-12  Score=108.29  Aligned_cols=94  Identities=23%  Similarity=0.241  Sum_probs=73.9

Q ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc-------CCCeEEEE
Q 024665          126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-------RTNVIPII  198 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~-------~~nV~~i~  198 (264)
                      +.+.+.++..|. ..++|+++|||+|||+|+.|..||+++++.++|+++|+++++++.+.+...+       ..++++++
T Consensus        60 P~~~a~~le~L~-~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~  138 (224)
T d1i1na_          60 PHMHAYALELLF-DQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVV  138 (224)
T ss_dssp             HHHHHHHHHHTT-TTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEE
T ss_pred             hHHHHHHHHHHh-hccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEE
Confidence            456666766552 1489999999999999999999999999999999999999887655544332       24899999


Q ss_pred             cCCCCchhhcccCCCccEEEEcCCC
Q 024665          199 EDARHPAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       199 ~D~~~~~~~~~~~~~fD~V~~d~p~  223 (264)
                      +|+.+...   ....||+|+++...
T Consensus       139 gD~~~~~~---~~~~fD~I~~~~~~  160 (224)
T d1i1na_         139 GDGRMGYA---EEAPYDAIHVGAAA  160 (224)
T ss_dssp             SCGGGCCG---GGCCEEEEEECSBB
T ss_pred             eecccccc---hhhhhhhhhhhcch
Confidence            99876542   24689999998763

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.34  E-value=2.8e-12  Score=106.42  Aligned_cols=89  Identities=18%  Similarity=0.090  Sum_probs=66.3

Q ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC-CCeEEEEcCCCCc
Q 024665          126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHP  204 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~-~nV~~i~~D~~~~  204 (264)
                      +.++..++..+....-..|.+|||+|||+|.+++.++..  +..+|++||+|+.+++.+.+++... .++.+++.|+.++
T Consensus        29 ~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~--g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~  106 (201)
T d1wy7a1          29 GNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLL--GAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF  106 (201)
T ss_dssp             HHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC
T ss_pred             HHHHHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHc--CCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhh
Confidence            445555543333333446889999999999999988765  4569999999998876665554433 3789999998664


Q ss_pred             hhhcccCCCccEEEEcCC
Q 024665          205 AKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       205 ~~~~~~~~~fD~V~~d~p  222 (264)
                            .++||+|++|||
T Consensus       107 ------~~~fD~Vi~nPP  118 (201)
T d1wy7a1         107 ------NSRVDIVIMNPP  118 (201)
T ss_dssp             ------CCCCSEEEECCC
T ss_pred             ------CCcCcEEEEcCc
Confidence                  368999999999

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.33  E-value=4.6e-12  Score=109.59  Aligned_cols=78  Identities=14%  Similarity=0.068  Sum_probs=62.7

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh---cCCCeEEEEcCCCCchhhcccCCCccE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK---KRTNVIPIIEDARHPAKYRMLVGMVDV  216 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~---~~~nV~~i~~D~~~~~~~~~~~~~fD~  216 (264)
                      .++|+++|||||||+|.++..||+..  ..+|++||+|+.+++.+.+.+.   ...+|+++++|+.+++   ...++||+
T Consensus        64 ~l~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~---~~~~sfD~  138 (282)
T d2o57a1          64 VLQRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP---CEDNSYDF  138 (282)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS---SCTTCEEE
T ss_pred             CCCCCCEEEEeCCCCcHHHhhhhccC--CcEEEEEeccchhhhhhhccccccccccccccccccccccc---ccccccch
Confidence            58899999999999999999999885  3589999999887654444433   3458999999999875   24578999


Q ss_pred             EEEcCC
Q 024665          217 IFSDVA  222 (264)
Q Consensus       217 V~~d~p  222 (264)
                      |++...
T Consensus       139 V~~~~~  144 (282)
T d2o57a1         139 IWSQDA  144 (282)
T ss_dssp             EEEESC
T ss_pred             hhccch
Confidence            998543

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.33  E-value=2.7e-12  Score=110.57  Aligned_cols=92  Identities=16%  Similarity=0.065  Sum_probs=71.1

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh---cCCCeEEEEcCCCCchhhcccCCCccEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK---KRTNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~---~~~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      ++++++|||++||+|.+++++|..  ..++|||+|+|+.+++.+.++++   ...+|+++++|++++..    ...||.|
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~--~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~----~~~~D~I  178 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVY--GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG----ENIADRI  178 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHH--TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC----CSCEEEE
T ss_pred             cCCccEEEECcceEcHHHHHHHHh--CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc----CCCCCEE
Confidence            679999999999999999999987  45699999999988655554444   34479999999998653    3689999


Q ss_pred             EEcCC-CchHHHHHHHHHhCCC
Q 024665          218 FSDVA-QPDQVCFLCLILFQPI  238 (264)
Q Consensus       218 ~~d~p-~~~~~~~~~~~~l~~~  238 (264)
                      ++++| ........+++.++++
T Consensus       179 i~~~p~~~~~~l~~a~~~l~~g  200 (260)
T d2frna1         179 LMGYVVRTHEFIPKALSIAKDG  200 (260)
T ss_dssp             EECCCSSGGGGHHHHHHHEEEE
T ss_pred             EECCCCchHHHHHHHHhhcCCC
Confidence            99987 3444445555555543

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.32  E-value=2.2e-12  Score=106.68  Aligned_cols=87  Identities=16%  Similarity=0.041  Sum_probs=66.1

Q ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCch
Q 024665          126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPA  205 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~  205 (264)
                      +.+++.++..+....--.|.+|||+|||+|.+++.++..  ...+|++||+++.+++.+.++   ..++.+++.|+.+++
T Consensus        31 ~~~a~~~~~~~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~--ga~~V~~vDid~~a~~~ar~N---~~~~~~~~~D~~~l~  105 (197)
T d1ne2a_          31 ASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLL--GAESVTAFDIDPDAIETAKRN---CGGVNFMVADVSEIS  105 (197)
T ss_dssp             HHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHT--TBSEEEEEESCHHHHHHHHHH---CTTSEEEECCGGGCC
T ss_pred             HHHHHHHHHHHHHcCCCCCCEEEEeCCCCcHHHHHHHHc--CCCcccccccCHHHHHHHHHc---cccccEEEEehhhcC
Confidence            567777765555443346899999999999999877765  355899999999776443332   237899999987643


Q ss_pred             hhcccCCCccEEEEcCCC
Q 024665          206 KYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       206 ~~~~~~~~fD~V~~d~p~  223 (264)
                            ++||+|++|||.
T Consensus       106 ------~~fD~Vi~NPPf  117 (197)
T d1ne2a_         106 ------GKYDTWIMNPPF  117 (197)
T ss_dssp             ------CCEEEEEECCCC
T ss_pred             ------CcceEEEeCccc
Confidence                  689999999993

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=5.1e-13  Score=116.65  Aligned_cols=101  Identities=17%  Similarity=0.179  Sum_probs=76.2

Q ss_pred             eeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChH
Q 024665          100 VYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHR  179 (264)
Q Consensus       100 vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~  179 (264)
                      .|.++.+++|++             +|++++.++      .++++++|||+||++|.+|++||+++. .++|+|+|+++.
T Consensus        78 ~~~~G~~~vQD~-------------sS~l~~~~L------~~~~g~~vLD~CAaPGgKt~~la~l~~-~~~i~a~d~~~~  137 (284)
T d1sqga2          78 GFEDGWVTVQDA-------------SAQGCMTWL------APQNGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDEQ  137 (284)
T ss_dssp             TGGGTSEEECCH-------------HHHTHHHHH------CCCTTCEEEEESCTTCHHHHHHHHHCT-TCEEEEEESSTT
T ss_pred             hhhccEEEeccc-------------ccccccccc------CccccceeEeccCccccchhhhhhhhh-hhhhhhhhcchh
Confidence            678888999997             899988887      589999999999999999999999864 589999999954


Q ss_pred             HHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665          180 SGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       180 ~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      -++.+.+..+..  .|+.+...|......  ....+||.|++|+|
T Consensus       138 R~~~l~~~~~r~g~~~~~~~~~~~~~~~~--~~~~~fd~IL~DaP  180 (284)
T d1sqga2         138 RLSRVYDNLKRLGMKATVKQGDGRYPSQW--CGEQQFDRILLDAP  180 (284)
T ss_dssp             THHHHHHHHHHTTCCCEEEECCTTCTHHH--HTTCCEEEEEEECC
T ss_pred             hhhhHhhhhhcccccceeeeccccccchh--cccccccEEEEecc
Confidence            333444443322  256555555543332  23468999999999

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.32  E-value=4e-12  Score=100.72  Aligned_cols=80  Identities=20%  Similarity=0.164  Sum_probs=63.1

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCCCchhhcccCCCccEEE
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIF  218 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~~~~~~~~~~~~fD~V~  218 (264)
                      -.+.+|||++||+|.+++.++.+  ...+|++||.++.+++.+.+.+...   .++++++.|+.+..+  ...++||+|+
T Consensus        13 ~~g~~vlDl~~GtG~~~iea~~r--ga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~--~~~~~fDiIf   88 (152)
T d2esra1          13 FNGGRVLDLFAGSGGLAIEAVSR--GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAID--CLTGRFDLVF   88 (152)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHH--HBCSCEEEEE
T ss_pred             CCCCeEEEcCCccCHHHHHHHHh--Ccceeeeehhchhhhhhhhhhhhhcccccchhhhccccccccc--ccccccceeE
Confidence            36889999999999999988765  4569999999998876555554433   369999999987653  2457899999


Q ss_pred             EcCCCch
Q 024665          219 SDVAQPD  225 (264)
Q Consensus       219 ~d~p~~~  225 (264)
                      +|||...
T Consensus        89 ~DPPy~~   95 (152)
T d2esra1          89 LDPPYAK   95 (152)
T ss_dssp             ECCSSHH
T ss_pred             echhhcc
Confidence            9999543

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.31  E-value=5.9e-12  Score=106.14  Aligned_cols=90  Identities=19%  Similarity=0.206  Sum_probs=71.8

Q ss_pred             chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCc
Q 024665          125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHP  204 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~  204 (264)
                      .+.+.+.++..|+   ++++++|||+|||+|++|..||.++   ++|+++|+++.+.+.+.+......|++++++|....
T Consensus        55 ~p~~~a~ml~~L~---l~~g~~VLdIG~GsGy~ta~La~l~---~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g  128 (224)
T d1vbfa_          55 ALNLGIFMLDELD---LHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLG  128 (224)
T ss_dssp             CHHHHHHHHHHTT---CCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGC
T ss_pred             hhhhHHHHHHHhh---hcccceEEEecCCCCHHHHHHHHHh---cccccccccHHHHHHHHHHHhcccccccccCchhhc
Confidence            3456666666666   9999999999999999999999985   489999999988766655555556999999998764


Q ss_pred             hhhcccCCCccEEEEcCCC
Q 024665          205 AKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       205 ~~~~~~~~~fD~V~~d~p~  223 (264)
                      .+   ...+||+|+++.+.
T Consensus       129 ~~---~~~pfD~Iiv~~a~  144 (224)
T d1vbfa_         129 YE---EEKPYDRVVVWATA  144 (224)
T ss_dssp             CG---GGCCEEEEEESSBB
T ss_pred             ch---hhhhHHHHHhhcch
Confidence            32   23689999998663

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.27  E-value=4.8e-12  Score=106.78  Aligned_cols=106  Identities=18%  Similarity=0.176  Sum_probs=75.6

Q ss_pred             ccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC-CCeEEEEcCCCCchhhcccCCCc
Q 024665          136 VDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMV  214 (264)
Q Consensus       136 l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~-~nV~~i~~D~~~~~~~~~~~~~f  214 (264)
                      +.....++..+|||+|||+|.++..|++.   ..+|++||+|+.|++.+.+.++.. .+++++++|+++++    +.++|
T Consensus        34 ~~~~~~~~~~~iLDiGcGtG~~~~~l~~~---~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~----~~~~f  106 (251)
T d1wzna1          34 FKEDAKREVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIA----FKNEF  106 (251)
T ss_dssp             HHHTCSSCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCC----CCSCE
T ss_pred             HHHhcCCCCCEEEEeCCCCCccchhhccc---ceEEEEEeeccccccccccccccccccchheehhhhhcc----ccccc
Confidence            33445777889999999999999999986   248999999999987766665543 48999999998875    34689


Q ss_pred             cEEEEcCCCchHHHHHHHHHhC-CCcHHHHHHHHHHhh-cchhh
Q 024665          215 DVIFSDVAQPDQVCFLCLILFQ-PIVINNLQSVNNETK-GGIFE  256 (264)
Q Consensus       215 D~V~~d~p~~~~~~~~~~~~l~-~~~~~~l~~~~~~Lk-~g~f~  256 (264)
                      |+|++--..        +..+. +.....++++.+.|+ +|.+.
T Consensus       107 D~I~~~~~~--------~~~~~~~~~~~~L~~~~~~LkpgG~li  142 (251)
T d1wzna1         107 DAVTMFFST--------IMYFDEEDLRKLFSKVAEALKPGGVFI  142 (251)
T ss_dssp             EEEEECSSG--------GGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             chHhhhhhh--------hhcCChHHHHHHHHHHHHHcCCCcEEE
Confidence            999974210        00010 113345777777887 66553

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.26  E-value=3.2e-12  Score=111.27  Aligned_cols=78  Identities=21%  Similarity=0.194  Sum_probs=60.4

Q ss_pred             cccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCCCchhhcccCCC
Q 024665          137 DNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGM  213 (264)
Q Consensus       137 ~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~~~~~~~~~~~~  213 (264)
                      +.+.++|+++|||+|||+|.++..+++..+  .+|++||+|+..++...+.+...   .++.+...|..++      .++
T Consensus        46 ~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g--~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~------~~~  117 (280)
T d2fk8a1          46 DKLDLKPGMTLLDIGCGWGTTMRRAVERFD--VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF------AEP  117 (280)
T ss_dssp             TTSCCCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC------CCC
T ss_pred             HHcCCCCCCEEEEecCCchHHHHHHHHhCc--eeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh------ccc
Confidence            344599999999999999999999998864  58999999987765555554432   3688888886654      378


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      ||.|++--.
T Consensus       118 fD~i~si~~  126 (280)
T d2fk8a1         118 VDRIVSIEA  126 (280)
T ss_dssp             CSEEEEESC
T ss_pred             hhhhhHhhH
Confidence            999997533

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.25  E-value=1.5e-11  Score=100.90  Aligned_cols=76  Identities=13%  Similarity=0.090  Sum_probs=60.8

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC----CCeEEEEcCCCCchhhcccCCCcc
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR----TNVIPIIEDARHPAKYRMLVGMVD  215 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~----~nV~~i~~D~~~~~~~~~~~~~fD  215 (264)
                      .+.++++|||+|||+|.+++.+|...   .+|+++|+|+.++..+.+.+...    .++++++.|+.+..    ..++||
T Consensus        49 ~~~~~~~VLDiGcG~G~~~~~la~~~---~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~----~~~~fD  121 (194)
T d1dusa_          49 VVDKDDDILDLGCGYGVIGIALADEV---KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV----KDRKYN  121 (194)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTC----TTSCEE
T ss_pred             CcCCCCeEEEEeecCChhHHHHHhhc---cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhh----ccCCce
Confidence            47889999999999999999999763   38999999988865554443322    36999999997743    246899


Q ss_pred             EEEEcCC
Q 024665          216 VIFSDVA  222 (264)
Q Consensus       216 ~V~~d~p  222 (264)
                      +|++|+|
T Consensus       122 ~Ii~~~p  128 (194)
T d1dusa_         122 KIITNPP  128 (194)
T ss_dssp             EEEECCC
T ss_pred             EEEEccc
Confidence            9999998

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.23  E-value=2.1e-11  Score=100.67  Aligned_cols=77  Identities=25%  Similarity=0.200  Sum_probs=62.7

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhcccCCCccEEE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRMLVGMVDVIF  218 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~~~~fD~V~  218 (264)
                      .+++.++|||||||+|.++..+++.   ..+|+|+|+|+.|++.+.+.+.. ..++.+++.|+.+++   ...++||+|+
T Consensus        34 ~l~~~~~ILDiGcG~G~~~~~la~~---~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~---~~~~~fD~I~  107 (226)
T d1ve3a1          34 YMKKRGKVLDLACGVGGFSFLLEDY---GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLS---FEDKTFDYVI  107 (226)
T ss_dssp             SCCSCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCC---SCTTCEEEEE
T ss_pred             hcCCCCEEEEECCCcchhhhhHhhh---hcccccccccccchhhhhhhhcccccccccccccccccc---ccCcCceEEE
Confidence            4678899999999999999999975   35899999999998776665543 347899999999865   2457899999


Q ss_pred             EcCC
Q 024665          219 SDVA  222 (264)
Q Consensus       219 ~d~p  222 (264)
                      +.-.
T Consensus       108 ~~~~  111 (226)
T d1ve3a1         108 FIDS  111 (226)
T ss_dssp             EESC
T ss_pred             Eecc
Confidence            8644

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.22  E-value=1.7e-11  Score=102.41  Aligned_cols=94  Identities=13%  Similarity=0.150  Sum_probs=69.3

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcccCCCcc
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVD  215 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~~~~fD  215 (264)
                      .++|+.+|||||||+|..+..|++.+. +..+|+|+|+|+.|++.+.+....   ..++++++.|+.+.+     ...+|
T Consensus        36 ~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~d  110 (225)
T d1im8a_          36 FVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE-----IKNAS  110 (225)
T ss_dssp             HCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCC-----CCSEE
T ss_pred             hcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccc-----cccce
Confidence            478999999999999999999998753 567999999999998776665432   237889999987754     36789


Q ss_pred             EEEEcCC-------CchHHHHHHHHHhCCC
Q 024665          216 VIFSDVA-------QPDQVCFLCLILFQPI  238 (264)
Q Consensus       216 ~V~~d~p-------~~~~~~~~~~~~l~~~  238 (264)
                      +|++...       .+........+.|+|+
T Consensus       111 ~i~~~~~l~~~~~~d~~~~l~~i~~~Lkpg  140 (225)
T d1im8a_         111 MVILNFTLQFLPPEDRIALLTKIYEGLNPN  140 (225)
T ss_dssp             EEEEESCGGGSCGGGHHHHHHHHHHHEEEE
T ss_pred             eeEEeeeccccChhhHHHHHHHHHHhCCCC
Confidence            9988644       1223344444555554

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=9.6e-12  Score=101.51  Aligned_cols=95  Identities=13%  Similarity=0.056  Sum_probs=68.9

Q ss_pred             CcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc--CCCeEEEEcC
Q 024665          123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--RTNVIPIIED  200 (264)
Q Consensus       123 p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~--~~nV~~i~~D  200 (264)
                      |.+++.-..+.+.|..  .-++.+||||+||||.+++.++.+  ...+|+.||.++.+++.+.++...  ..++++++.|
T Consensus        25 Pt~~~vre~lfn~l~~--~~~~~~vLDlfaGsG~~giealsr--Ga~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d  100 (183)
T d2fpoa1          25 PTTDRVRETLFNWLAP--VIVDAQCLDCFAGSGALGLEALSR--YAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSN  100 (183)
T ss_dssp             --CHHHHHHHHHHHHH--HHTTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSC
T ss_pred             cCcHHHHHHHHhhhhc--ccchhhhhhhhccccceeeeEEec--CcceeEEEEEeechhhHHHHHHhhccccceeeeeec
Confidence            4355555555555541  236789999999999999998876  456999999998886555544432  2389999999


Q ss_pred             CCCchhhcccCCCccEEEEcCCC
Q 024665          201 ARHPAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       201 ~~~~~~~~~~~~~fD~V~~d~p~  223 (264)
                      +.+...  ....+||+||+|||.
T Consensus       101 ~~~~l~--~~~~~fDlIf~DPPY  121 (183)
T d2fpoa1         101 AMSFLA--QKGTPHNIVFVDPPF  121 (183)
T ss_dssp             HHHHHS--SCCCCEEEEEECCSS
T ss_pred             cccccc--ccccccCEEEEcCcc
Confidence            877543  234689999999994

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.20  E-value=2.1e-11  Score=99.48  Aligned_cols=97  Identities=13%  Similarity=0.028  Sum_probs=71.0

Q ss_pred             CcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHh---hcCCCeEEEEc
Q 024665          123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA---KKRTNVIPIIE  199 (264)
Q Consensus       123 p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a---~~~~nV~~i~~  199 (264)
                      |.+++.=..+.+.|.  ...++.+||||+||||.+++.++..  .+.+|++||.++.+++.+.++.   ....++++++.
T Consensus        23 Pt~~~vrealFn~l~--~~~~~~~vLDlfaGsG~~g~ea~sr--Ga~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~   98 (182)
T d2fhpa1          23 PTTDKVKESIFNMIG--PYFDGGMALDLYSGSGGLAIEAVSR--GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKM   98 (182)
T ss_dssp             CCCHHHHHHHHHHHC--SCCSSCEEEETTCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEES
T ss_pred             cCcHHHHHHHHHHHH--HhcCCCEEEEcccccccccceeeec--chhHHHHHHHHHHHHHHHHHHhhhhhcccccccccc
Confidence            445555556666655  3457899999999999999998887  4669999999987754444433   33348999999


Q ss_pred             CCCCchhh-cccCCCccEEEEcCCC
Q 024665          200 DARHPAKY-RMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       200 D~~~~~~~-~~~~~~fD~V~~d~p~  223 (264)
                      |+.+.... .....+||+||+|||.
T Consensus        99 D~~~~l~~~~~~~~~fDlIflDPPY  123 (182)
T d2fhpa1          99 DANRALEQFYEEKLQFDLVLLDPPY  123 (182)
T ss_dssp             CHHHHHHHHHHTTCCEEEEEECCCG
T ss_pred             cchhhhhhhcccCCCcceEEechhh
Confidence            99875432 1223589999999994

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=3.5e-11  Score=104.21  Aligned_cols=77  Identities=17%  Similarity=0.123  Sum_probs=61.5

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      +...+|||+|||||.+++.+|... |..+|+|+|+|+.+++.+.+++...  .||++++.|..+..+    ..+||+|++
T Consensus       107 ~~~~~vlDlGtGSG~I~i~la~~~-p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~----~~~fDlIvs  181 (274)
T d2b3ta1         107 EQPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALA----GQQFAMIVS  181 (274)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGT----TCCEEEEEE
T ss_pred             ccccceeeeehhhhHHHHHHHhhC-CcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccC----CCceeEEEe
Confidence            445789999999999999999885 6789999999988865544444322  389999999877542    358999999


Q ss_pred             cCCC
Q 024665          220 DVAQ  223 (264)
Q Consensus       220 d~p~  223 (264)
                      |||.
T Consensus       182 NPPY  185 (274)
T d2b3ta1         182 NPPY  185 (274)
T ss_dssp             CCCC
T ss_pred             cchh
Confidence            9993

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.19  E-value=2.6e-11  Score=100.68  Aligned_cols=81  Identities=17%  Similarity=0.173  Sum_probs=66.1

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      +...|||||||+|.+++++|.. .|...++|||+++.+++.+.+.+...  .||.++++|+.++... ....++|.|++.
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~-~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~-~~~~~~d~v~i~  106 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQ-NPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDV-FEPGEVKRVYLN  106 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHH-CTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHH-CCTTSCCEEEEE
T ss_pred             CCceEEEEEecCcHHHHHHHHh-CCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcc-cCchhhhccccc
Confidence            3458999999999999999998 57889999999988877766665543  4999999999886532 456789999998


Q ss_pred             CCCch
Q 024665          221 VAQPD  225 (264)
Q Consensus       221 ~p~~~  225 (264)
                      .|.|+
T Consensus       107 fp~P~  111 (204)
T d2fcaa1         107 FSDPW  111 (204)
T ss_dssp             SCCCC
T ss_pred             ccccc
Confidence            88665

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.19  E-value=5e-11  Score=103.24  Aligned_cols=94  Identities=9%  Similarity=0.021  Sum_probs=73.9

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC-CeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT-NVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~-nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      +.+..+|||+|||+|.++..++..+....+|+++|+|+.+++.+.+...... |+++++.|+.+++    ..++||+|++
T Consensus        25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~----~~~~fD~v~~  100 (281)
T d2gh1a1          25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIE----LNDKYDIAIC  100 (281)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCC----CSSCEEEEEE
T ss_pred             cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccccccccccc----ccCCceEEEE
Confidence            5667899999999999999999987666799999999988777666655443 8999999998864    2468999998


Q ss_pred             cCC-----CchHHHHHHHHHhCCC
Q 024665          220 DVA-----QPDQVCFLCLILFQPI  238 (264)
Q Consensus       220 d~p-----~~~~~~~~~~~~l~~~  238 (264)
                      ...     .|........+.++|+
T Consensus       101 ~~~l~~~~d~~~~l~~~~~~Lkpg  124 (281)
T d2gh1a1         101 HAFLLHMTTPETMLQKMIHSVKKG  124 (281)
T ss_dssp             ESCGGGCSSHHHHHHHHHHTEEEE
T ss_pred             ehhhhcCCCHHHHHHHHHHHcCcC
Confidence            755     4555556666666665

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.17  E-value=2.2e-11  Score=106.12  Aligned_cols=82  Identities=17%  Similarity=0.184  Sum_probs=62.6

Q ss_pred             HHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh---cCCCeEEEEcCCCCc
Q 024665          128 LAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK---KRTNVIPIIEDARHP  204 (264)
Q Consensus       128 l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~---~~~nV~~i~~D~~~~  204 (264)
                      +...++..   +.++||++|||||||+|.+++++|+..+  ++|++|++|+.-++...+.+.   ...+|++...|+.++
T Consensus        50 k~~~~~~~---l~l~~G~~VLDiGCG~G~~a~~~a~~~g--~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~  124 (285)
T d1kpga_          50 KIDLALGK---LGLQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF  124 (285)
T ss_dssp             HHHHHHTT---TTCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC
T ss_pred             HHHHHHHH---cCCCCCCEEEEecCcchHHHHHHHhcCC--cceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc
Confidence            33444444   4599999999999999999999999864  699999999765544444433   334899999998664


Q ss_pred             hhhcccCCCccEEEEc
Q 024665          205 AKYRMLVGMVDVIFSD  220 (264)
Q Consensus       205 ~~~~~~~~~fD~V~~d  220 (264)
                            +++||.|++-
T Consensus       125 ------~~~fD~i~si  134 (285)
T d1kpga_         125 ------DEPVDRIVSI  134 (285)
T ss_dssp             ------CCCCSEEEEE
T ss_pred             ------cccccceeee
Confidence                  3689999974

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.17  E-value=6.1e-11  Score=99.17  Aligned_cols=90  Identities=24%  Similarity=0.269  Sum_probs=71.3

Q ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc--CCCeEEEEcCCCC
Q 024665          126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--RTNVIPIIEDARH  203 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~--~~nV~~i~~D~~~  203 (264)
                      +.+.+.++..++   ++|+++|||+|||||+.|..||.+++  ++|+++|.++.+++.+.+....  ..|++++++|+.+
T Consensus        64 P~~~a~ml~~L~---l~~g~~VLeIGsGsGY~taila~l~g--~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~  138 (215)
T d1jg1a_          64 PHMVAIMLEIAN---LKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSK  138 (215)
T ss_dssp             HHHHHHHHHHHT---CCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG
T ss_pred             hhhHHHHHHhhc---cCccceEEEecCCCChhHHHHHHhhC--ceeEEEeccHHHHHHHHHHHHHcCCceeEEEECcccc
Confidence            456677776666   99999999999999999999999975  5799999998776555544433  2599999999987


Q ss_pred             chhhcccCCCccEEEEcCCC
Q 024665          204 PAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       204 ~~~~~~~~~~fD~V~~d~p~  223 (264)
                      ..+   ...+||+|++..+.
T Consensus       139 g~~---~~~pfD~Iiv~~a~  155 (215)
T d1jg1a_         139 GFP---PKAPYDVIIVTAGA  155 (215)
T ss_dssp             CCG---GGCCEEEEEECSBB
T ss_pred             CCc---ccCcceeEEeeccc
Confidence            442   24789999998763

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.16  E-value=4.7e-11  Score=100.45  Aligned_cols=95  Identities=20%  Similarity=0.239  Sum_probs=71.0

Q ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCC-----EEEEEeCChHHHHHHHHHhh-------cCCC
Q 024665          126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNG-----VVYAVEFSHRSGRDLVNMAK-------KRTN  193 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g-----~V~avD~s~~~~~~l~~~a~-------~~~n  193 (264)
                      +.+.+.++..|. ..++|+++|||+|||||++|..||.++++.+     +|+++|+++++++...+...       ...|
T Consensus        64 P~~~a~~l~~L~-~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~n  142 (223)
T d1r18a_          64 PHMHAFALEYLR-DHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQ  142 (223)
T ss_dssp             HHHHHHHHHHTT-TTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             hhhHHHHHHHHh-hccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccE
Confidence            446666665552 1489999999999999999999999986544     89999999877554433211       1249


Q ss_pred             eEEEEcCCCCchhhcccCCCccEEEEcCCCc
Q 024665          194 VIPIIEDARHPAKYRMLVGMVDVIFSDVAQP  224 (264)
Q Consensus       194 V~~i~~D~~~~~~~~~~~~~fD~V~~d~p~~  224 (264)
                      |+++++|..+..+   ...+||+|+++.+.+
T Consensus       143 v~~~~~d~~~~~~---~~~~fD~Iiv~~a~~  170 (223)
T d1r18a_         143 LLIVEGDGRKGYP---PNAPYNAIHVGAAAP  170 (223)
T ss_dssp             EEEEESCGGGCCG---GGCSEEEEEECSCBS
T ss_pred             EEEEecccccccc---cccceeeEEEEeech
Confidence            9999999987542   246899999988743

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.16  E-value=7e-11  Score=95.10  Aligned_cols=78  Identities=18%  Similarity=0.130  Sum_probs=62.9

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--------------CCeEEEEcCCCCch
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--------------TNVIPIIEDARHPA  205 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--------------~nV~~i~~D~~~~~  205 (264)
                      .++|+++|||+|||+|..+..||+.   ..+|+|+|+|+.|++.+.+.++..              .++++++.|+.++.
T Consensus        17 ~~~~~~rvLd~GCG~G~~a~~la~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~   93 (201)
T d1pjza_          17 NVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALT   93 (201)
T ss_dssp             CCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSST
T ss_pred             CCCCCCEEEEecCcCCHHHHHHHHc---CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccc
Confidence            4999999999999999999999987   359999999999987776666432              25688999998866


Q ss_pred             hhcccCCCccEEEEcCC
Q 024665          206 KYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       206 ~~~~~~~~fD~V~~d~p  222 (264)
                      ..  ....||+|++...
T Consensus        94 ~~--~~~~~D~i~~~~~  108 (201)
T d1pjza_          94 AR--DIGHCAAFYDRAA  108 (201)
T ss_dssp             HH--HHHSEEEEEEESC
T ss_pred             cc--cccceeEEEEEee
Confidence            42  3358999987554

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.14  E-value=5.1e-11  Score=106.30  Aligned_cols=96  Identities=20%  Similarity=0.107  Sum_probs=72.8

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC--CeEEEEcCCCCchhh-cccCCCccE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT--NVIPIIEDARHPAKY-RMLVGMVDV  216 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~--nV~~i~~D~~~~~~~-~~~~~~fD~  216 (264)
                      .+.++++||||+||+|++++.||+.+   .+|+|||.++.+++.+.++++.+.  |++++.+|+.+.... ......+|+
T Consensus       209 ~~~~~~~vlDLycG~G~fsl~La~~~---~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~  285 (358)
T d1uwva2         209 DVQPEDRVLDLFCGMGNFTLPLATQA---ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDK  285 (358)
T ss_dssp             TCCTTCEEEEESCTTTTTHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSE
T ss_pred             ccCCCceEEEecccccccchhccccc---cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCce
Confidence            47889999999999999999999864   499999999988877777665543  999999999875432 122357999


Q ss_pred             EEEcCCCch-HHHHHHHHHhCCC
Q 024665          217 IFSDVAQPD-QVCFLCLILFQPI  238 (264)
Q Consensus       217 V~~d~p~~~-~~~~~~~~~l~~~  238 (264)
                      |++|||..- ...+..+..+.|.
T Consensus       286 vilDPPR~G~~~~~~~l~~~~~~  308 (358)
T d1uwva2         286 VLLDPARAGAAGVMQQIIKLEPI  308 (358)
T ss_dssp             EEECCCTTCCHHHHHHHHHHCCS
T ss_pred             EEeCCCCccHHHHHHHHHHcCCC
Confidence            999999211 2345555556666

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.14  E-value=1.2e-10  Score=96.48  Aligned_cols=81  Identities=14%  Similarity=0.187  Sum_probs=66.2

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      ....|||||||+|.+++.+|... |...++|||+++.++..+++.+...  .||.++++|+.++..+ ....++|.|++.
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~-p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~-~~~~~~~~i~i~  108 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDY-FEDGEIDRLYLN  108 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGT-SCTTCCSEEEEE
T ss_pred             CCCeEEEEeccCCHHHHHHHHHC-CCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhh-ccCCceehhccc
Confidence            34589999999999999999985 7889999999988776666655433  4999999999987643 345689999999


Q ss_pred             CCCch
Q 024665          221 VAQPD  225 (264)
Q Consensus       221 ~p~~~  225 (264)
                      .|.||
T Consensus       109 fPdPw  113 (204)
T d1yzha1         109 FSDPW  113 (204)
T ss_dssp             SCCCC
T ss_pred             ccccc
Confidence            99776

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.13  E-value=1.6e-10  Score=98.18  Aligned_cols=79  Identities=27%  Similarity=0.246  Sum_probs=62.6

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcccCCCccE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVDV  216 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~~~~fD~  216 (264)
                      .++++++|||||||+|..+..+++.  ..++|+|||+|+.|++.+.+.+..   ..++.++++|+.....  ...++||+
T Consensus        21 ~~~~~~~VLDlGCG~G~~~~~~~~~--~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~--~~~~~fD~   96 (252)
T d1ri5a_          21 YTKRGDSVLDLGCGKGGDLLKYERA--GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHM--DLGKEFDV   96 (252)
T ss_dssp             HCCTTCEEEEETCTTTTTHHHHHHH--TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCC--CCSSCEEE
T ss_pred             hCCCcCEEEEecccCcHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcc--cccccceE
Confidence            3789999999999999999999886  456899999999998777665543   2379999999976432  13468999


Q ss_pred             EEEcCC
Q 024665          217 IFSDVA  222 (264)
Q Consensus       217 V~~d~p  222 (264)
                      |++...
T Consensus        97 V~~~~~  102 (252)
T d1ri5a_          97 ISSQFS  102 (252)
T ss_dssp             EEEESC
T ss_pred             EEEcce
Confidence            998755

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.12  E-value=7e-11  Score=99.68  Aligned_cols=70  Identities=14%  Similarity=0.101  Sum_probs=57.7

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC-CCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~-~nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      +..+|||+|||+|.++..|++..   .+|+|||+|+.|++.+.+.++.. .+|+++++|++++.    +.++||+|++
T Consensus        37 ~~~~vLDiGCG~G~~~~~l~~~g---~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~----~~~~fD~i~~  107 (246)
T d1y8ca_          37 VFDDYLDLACGTGNLTENLCPKF---KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLN----INRKFDLITC  107 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGS---SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCC----CSCCEEEEEE
T ss_pred             CCCeEEEEeCcCCHHHHHHHHhC---CccEeeccchhhhhhccccccccCccceeeccchhhhc----ccccccccce
Confidence            45799999999999999999873   38999999999987766655433 48999999998865    3478999997

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.12  E-value=3.2e-10  Score=92.65  Aligned_cols=74  Identities=24%  Similarity=0.255  Sum_probs=59.8

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIF  218 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~  218 (264)
                      ++|+ +|||||||+|..+..+++.   ..+|++||+|+.+++.+.+.+...  .++++.+.|+.+..    ..++||+|+
T Consensus        29 ~~~g-rvLDiGcG~G~~~~~la~~---g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~----~~~~fD~I~  100 (198)
T d2i6ga1          29 VAPG-RTLDLGCGNGRNSLYLAAN---GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLT----FDGEYDFIL  100 (198)
T ss_dssp             SCSC-EEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCC----CCCCEEEEE
T ss_pred             CCCC-cEEEECCCCCHHHHHHHHH---hhhhccccCcHHHHHHHHHHhhhccccchhhhheeccccc----ccccccEEE
Confidence            4555 9999999999999999987   348999999998877666555433  48999999998765    347899999


Q ss_pred             EcCC
Q 024665          219 SDVA  222 (264)
Q Consensus       219 ~d~p  222 (264)
                      +...
T Consensus       101 ~~~~  104 (198)
T d2i6ga1         101 STVV  104 (198)
T ss_dssp             EESC
T ss_pred             Eeee
Confidence            8765

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2.4e-11  Score=102.19  Aligned_cols=79  Identities=24%  Similarity=0.258  Sum_probs=61.9

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC-CCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~-~nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      ..++.+|||||||+|.++..+++.  ...+|++||+|+.+++.+.+.+... .++.++..|+.+.... ....+||.|+.
T Consensus        51 ~~~g~~VLdIGcG~G~~a~~~a~~--~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~i~f  127 (229)
T d1zx0a1          51 SSKGGRVLEVGFGMAIAASKVQEA--PIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPT-LPDGHFDGILY  127 (229)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHHTS--CEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGG-SCTTCEEEEEE
T ss_pred             ccCCCeEEEeeccchHHHHHHHHc--CCCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccc-cccccccceee
Confidence            467899999999999999999976  2358999999999887776666544 3788888887654321 33468999999


Q ss_pred             cCC
Q 024665          220 DVA  222 (264)
Q Consensus       220 d~p  222 (264)
                      |..
T Consensus       128 D~~  130 (229)
T d1zx0a1         128 DTY  130 (229)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            976

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.10  E-value=1.1e-10  Score=97.56  Aligned_cols=71  Identities=17%  Similarity=0.108  Sum_probs=54.6

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      .++++.+|||+|||+|.++..|++.   ..+|+|+|+|+.|++.+.+.    ....++++|+.+++   ...++||+|++
T Consensus        39 ~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~----~~~~~~~~~~~~l~---~~~~~fD~ii~  108 (246)
T d2avna1          39 YLKNPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREK----GVKNVVEAKAEDLP---FPSGAFEAVLA  108 (246)
T ss_dssp             HCCSCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHH----TCSCEEECCTTSCC---SCTTCEEEEEE
T ss_pred             hcCCCCEEEEECCCCchhccccccc---ceEEEEeecccccccccccc----cccccccccccccc---cccccccceee
Confidence            3567889999999999999999976   34899999999886544332    22346788998864   34579999997


Q ss_pred             c
Q 024665          220 D  220 (264)
Q Consensus       220 d  220 (264)
                      .
T Consensus       109 ~  109 (246)
T d2avna1         109 L  109 (246)
T ss_dssp             C
T ss_pred             e
Confidence            4

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=1.8e-10  Score=99.00  Aligned_cols=88  Identities=15%  Similarity=0.190  Sum_probs=66.3

Q ss_pred             HHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhh
Q 024665          128 LAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY  207 (264)
Q Consensus       128 l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~  207 (264)
                      +...+...+.+....++.+|||+|||+|.++..+++.. +..+|++||+|+.|++.+.+   ..+|+.++++|+.+++  
T Consensus        69 l~~~~~~~l~~~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~~giD~s~~~~~~a~~---~~~~~~~~~~d~~~l~--  142 (268)
T d1p91a_          69 LRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAK---RYPQVTFCVASSHRLP--  142 (268)
T ss_dssp             HHHHHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHH---HCTTSEEEECCTTSCS--
T ss_pred             HHHHHHHHHHHhcCCCCCEEEEeCCCCcHHHHHHHHHC-CCCEEEEecchHhhhhhhhc---ccccccceeeehhhcc--
Confidence            34444444444446678899999999999999999885 56799999999987644322   2458999999999875  


Q ss_pred             cccCCCccEEEEcCC
Q 024665          208 RMLVGMVDVIFSDVA  222 (264)
Q Consensus       208 ~~~~~~fD~V~~d~p  222 (264)
                       ...++||+|++...
T Consensus       143 -~~~~sfD~v~~~~~  156 (268)
T d1p91a_         143 -FSDTSMDAIIRIYA  156 (268)
T ss_dssp             -BCTTCEEEEEEESC
T ss_pred             -CCCCCEEEEeecCC
Confidence             34678999997544

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.08  E-value=1.6e-10  Score=100.83  Aligned_cols=84  Identities=20%  Similarity=0.131  Sum_probs=61.8

Q ss_pred             HHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCc
Q 024665          128 LAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHP  204 (264)
Q Consensus       128 l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~  204 (264)
                      ....++..+   .++||++|||||||+|.++.++|+..+  ++|++|++|++.++...+.+..   ...+++...|... 
T Consensus        49 k~~~~~~~l---~l~~G~~VLDiGCG~G~~~~~~a~~~g--~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~-  122 (291)
T d1kpia_          49 KRKLALDKL---NLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE-  122 (291)
T ss_dssp             HHHHHHHTT---CCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGG-
T ss_pred             HHHHHHHhc---CCCCCCEEEEecCcchHHHHHHHHhcC--cceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccc-
Confidence            344444444   599999999999999999999998864  6999999997665444444432   3378888888643 


Q ss_pred             hhhcccCCCccEEEEcCC
Q 024665          205 AKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       205 ~~~~~~~~~fD~V~~d~p  222 (264)
                           ..++||.|++--.
T Consensus       123 -----~~~~fD~i~sie~  135 (291)
T d1kpia_         123 -----FDEPVDRIVSLGA  135 (291)
T ss_dssp             -----CCCCCSEEEEESC
T ss_pred             -----cccccceEeechh
Confidence                 3478999997533

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.3e-10  Score=97.31  Aligned_cols=78  Identities=18%  Similarity=0.156  Sum_probs=62.2

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc-------------------CCCeEEEEcC
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-------------------RTNVIPIIED  200 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~-------------------~~nV~~i~~D  200 (264)
                      .++++.+|||+|||+|..+..||+.   ..+|+|||+|+.+++.+.+.+..                   ..++++++.|
T Consensus        42 ~~~~~~rvLd~GCG~G~~a~~LA~~---G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d  118 (229)
T d2bzga1          42 KGKSGLRVFFPLCGKAVEMKWFADR---GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCS  118 (229)
T ss_dssp             TTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESC
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHHhC---CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcc
Confidence            3789999999999999999999986   34899999999887766665432                   1379999999


Q ss_pred             CCCchhhcccCCCccEEEEcCC
Q 024665          201 ARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       201 ~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      +.++..  .....||+|+....
T Consensus       119 ~~~l~~--~~~~~fd~i~~~~~  138 (229)
T d2bzga1         119 IFDLPR--TNIGKFDMIWDRGA  138 (229)
T ss_dssp             GGGGGG--SCCCCEEEEEESSS
T ss_pred             hhhccc--cccCceeEEEEEEE
Confidence            988664  34568999986543

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.06  E-value=5.1e-10  Score=95.51  Aligned_cols=81  Identities=11%  Similarity=-0.015  Sum_probs=64.3

Q ss_pred             cccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccE
Q 024665          137 DNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDV  216 (264)
Q Consensus       137 ~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~  216 (264)
                      +.+...+..+|||+|||+|.+|..|+....  ..|++||.|+.|++.+.+......++++++.|+.++.   ...++||+
T Consensus        87 ~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~---~~~~~fD~  161 (254)
T d1xtpa_          87 ASLPGHGTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETAT---LPPNTYDL  161 (254)
T ss_dssp             HTSTTCCCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCC---CCSSCEEE
T ss_pred             hhCCCCCCCeEEEecccCChhhHHHHhhcC--ceEEEEcCCHHHHHhhhccccccccceeEEccccccc---cCCCccce
Confidence            333467788999999999999999886643  3899999999998776666655567999999998765   23568999


Q ss_pred             EEEcCC
Q 024665          217 IFSDVA  222 (264)
Q Consensus       217 V~~d~p  222 (264)
                      |++...
T Consensus       162 I~~~~v  167 (254)
T d1xtpa_         162 IVIQWT  167 (254)
T ss_dssp             EEEESC
T ss_pred             EEeecc
Confidence            998765

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.04  E-value=1.8e-10  Score=92.87  Aligned_cols=96  Identities=15%  Similarity=-0.013  Sum_probs=61.9

Q ss_pred             CcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC-CCeEEEEcCC
Q 024665          123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDA  201 (264)
Q Consensus       123 p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~-~nV~~i~~D~  201 (264)
                      |..++.-..+.+.|.. .+.++.+|||+|||+|.+++.++..   ..+|++||.|+.+++.+.+++... .+.+++..|+
T Consensus        22 pt~~~v~e~lf~~l~~-~~~~g~~vLDl~~G~G~~~i~a~~~---ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~   97 (171)
T d1ws6a1          22 PSPVRLRKALFDYLRL-RYPRRGRFLDPFAGSGAVGLEAASE---GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPV   97 (171)
T ss_dssp             CCCHHHHHHHHHHHHH-HCTTCCEEEEETCSSCHHHHHHHHT---TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCH
T ss_pred             CCcHHHHHHHHHHhhc-cccCCCeEEEeccccchhhhhhhhc---cchhhhcccCHHHHhhhhHHHHhhccccceeeeeh
Confidence            4344444444444431 3678899999999999999988775   348999999998865554444322 2334555554


Q ss_pred             CCchhh-cccCCCccEEEEcCC
Q 024665          202 RHPAKY-RMLVGMVDVIFSDVA  222 (264)
Q Consensus       202 ~~~~~~-~~~~~~fD~V~~d~p  222 (264)
                      ..+... ....++||+||+|||
T Consensus        98 d~~~~~~~~~~~~fD~If~DPP  119 (171)
T d1ws6a1          98 EVFLPEAKAQGERFTVAFMAPP  119 (171)
T ss_dssp             HHHHHHHHHTTCCEEEEEECCC
T ss_pred             hcccccccccCCccceeEEccc
Confidence            332211 123468999999999

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=3.6e-10  Score=93.99  Aligned_cols=78  Identities=12%  Similarity=-0.093  Sum_probs=61.6

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      ...+..+|||||||+|.++..++...  ..+|++||+|+.|++.+.+.+...  .+++++++|++++.   ...++||+|
T Consensus        57 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~---~~~~~fD~I  131 (222)
T d2ex4a1          57 NKTGTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFT---PEPDSYDVI  131 (222)
T ss_dssp             -CCCCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCC---CCSSCEEEE
T ss_pred             CCCCCCEEEEeccCCCHhhHHHHHhc--CCEEEEeecCHHHhhccccccccccccccccccccccccc---ccccccccc
Confidence            35678899999999999999987553  348999999999987766665443  37899999998865   245799999


Q ss_pred             EEcCC
Q 024665          218 FSDVA  222 (264)
Q Consensus       218 ~~d~p  222 (264)
                      ++...
T Consensus       132 ~~~~~  136 (222)
T d2ex4a1         132 WIQWV  136 (222)
T ss_dssp             EEESC
T ss_pred             ccccc
Confidence            98655

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.03  E-value=1.6e-10  Score=102.17  Aligned_cols=81  Identities=21%  Similarity=0.218  Sum_probs=62.9

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh---cCCCeEEEEcCCCCchhh-cccCCCcc
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK---KRTNVIPIIEDARHPAKY-RMLVGMVD  215 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~---~~~nV~~i~~D~~~~~~~-~~~~~~fD  215 (264)
                      .++++++|||+|||+|.+++++|..  ...+|+++|+|+.+++.+.+++.   ...+++++++|+.+.... .....+||
T Consensus       142 ~~~~g~~VLDl~~g~G~~si~~a~~--ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD  219 (324)
T d2as0a2         142 WVQPGDRVLDVFTYTGGFAIHAAIA--GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFD  219 (324)
T ss_dssp             GCCTTCEEEETTCTTTHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             hcCCCCeeecccCcccchhhhhhhc--CCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCC
Confidence            3678999999999999999999865  45699999999877655444443   334899999999875422 12346899


Q ss_pred             EEEEcCC
Q 024665          216 VIFSDVA  222 (264)
Q Consensus       216 ~V~~d~p  222 (264)
                      +|++|+|
T Consensus       220 ~Vi~DpP  226 (324)
T d2as0a2         220 IVVLDPP  226 (324)
T ss_dssp             EEEECCC
T ss_pred             chhcCCc
Confidence            9999999

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=99.03  E-value=1.2e-09  Score=92.32  Aligned_cols=88  Identities=13%  Similarity=0.155  Sum_probs=70.6

Q ss_pred             HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchh
Q 024665          127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK  206 (264)
Q Consensus       127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~  206 (264)
                      ..+..|+..++   ++++++|||+|||+|.+|..|++..   .+|+|||+++++++.+.+.....+|++++++|+.+...
T Consensus         8 ~i~~~iv~~~~---~~~~d~VlEIGpG~G~LT~~Ll~~~---~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~   81 (235)
T d1qama_           8 HNIDKIMTNIR---LNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKF   81 (235)
T ss_dssp             HHHHHHHTTCC---CCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCC
T ss_pred             HHHHHHHHhcC---CCCCCeEEEECCCchHHHHHHHhCc---CceEEEeeccchHHHHHHHhhcccchhhhhhhhhhccc
Confidence            45666665555   8999999999999999999999883   48999999999987776666556799999999988642


Q ss_pred             hcccCCCccEEEEcCCC
Q 024665          207 YRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       207 ~~~~~~~fD~V~~d~p~  223 (264)
                         .......|++|.|.
T Consensus        82 ---~~~~~~~vv~NLPY   95 (235)
T d1qama_          82 ---PKNQSYKIFGNIPY   95 (235)
T ss_dssp             ---CSSCCCEEEEECCG
T ss_pred             ---cccccceeeeeehh
Confidence               22345678899994

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.02  E-value=2.6e-10  Score=92.79  Aligned_cols=96  Identities=14%  Similarity=0.010  Sum_probs=66.1

Q ss_pred             chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---CC-CeEEEEcC
Q 024665          125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RT-NVIPIIED  200 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~~-nV~~i~~D  200 (264)
                      .++.-..+.+.|..  --++.+||||+||||.+++.++.+  .+.+|+.||.++.+++.+.++...   .. .+.+++.|
T Consensus        27 ~~~vrealFn~l~~--~~~~~~vLDlFaGsG~~glEalSR--GA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d  102 (183)
T d2ifta1          27 GDRVKETLFNWLMP--YIHQSECLDGFAGSGSLGFEALSR--QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQS  102 (183)
T ss_dssp             -CHHHHHHHHHHHH--HHTTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSC
T ss_pred             cHHHHHHHHHHhhh--hcccceEeecccCccceeeeeeee--cceeeEEeecccchhhhHhhHHhhhccccccccccccc
Confidence            44444555555541  136789999999999999999987  567999999998776544443332   22 57777888


Q ss_pred             CCCchhhcccCCCccEEEEcCCCc
Q 024665          201 ARHPAKYRMLVGMVDVIFSDVAQP  224 (264)
Q Consensus       201 ~~~~~~~~~~~~~fD~V~~d~p~~  224 (264)
                      +.+.........+||+||+|||..
T Consensus       103 ~~~~l~~~~~~~~fDlIFlDPPY~  126 (183)
T d2ifta1         103 SLDFLKQPQNQPHFDVVFLDPPFH  126 (183)
T ss_dssp             HHHHTTSCCSSCCEEEEEECCCSS
T ss_pred             ccccccccccCCcccEEEechhHh
Confidence            765443322345799999999953

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.01  E-value=2.1e-10  Score=101.22  Aligned_cols=79  Identities=20%  Similarity=0.047  Sum_probs=62.5

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhh-cccCCCccEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKY-RMLVGMVDVI  217 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~-~~~~~~fD~V  217 (264)
                      ..++++|||+|||+|.+++++|..   ..+|+++|+|+.+++.+.+++..+  .|+++++.|+.+.... ....++||+|
T Consensus       143 ~~~g~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~V  219 (318)
T d1wxxa2         143 RFRGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLV  219 (318)
T ss_dssp             GCCEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             HhCCCeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEE
Confidence            346899999999999999999864   458999999998876665555443  3899999999886432 2234689999


Q ss_pred             EEcCC
Q 024665          218 FSDVA  222 (264)
Q Consensus       218 ~~d~p  222 (264)
                      ++|+|
T Consensus       220 i~DpP  224 (318)
T d1wxxa2         220 VLDPP  224 (318)
T ss_dssp             EECCC
T ss_pred             EEcCC
Confidence            99999

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.3e-09  Score=95.26  Aligned_cols=77  Identities=22%  Similarity=0.193  Sum_probs=60.0

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHH--HHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGR--DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIF  218 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~--~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~  218 (264)
                      +.++++|||||||+|.+++.+|+.  .+.+|+|+|.|+.+..  +.+..+....+|+++++|+.++..   ..++||+|+
T Consensus        33 ~~~~~~VLDiGcG~G~lsl~aa~~--Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~---~~~~~D~Iv  107 (311)
T d2fyta1          33 IFKDKVVLDVGCGTGILSMFAAKA--GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHL---PVEKVDVII  107 (311)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCC---SCSCEEEEE
T ss_pred             cCCcCEEEEECCCCCHHHHHHHHc--CCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcC---ccccceEEE
Confidence            678999999999999999999976  3468999999986642  222233334589999999998652   346999999


Q ss_pred             EcCC
Q 024665          219 SDVA  222 (264)
Q Consensus       219 ~d~p  222 (264)
                      ++..
T Consensus       108 se~~  111 (311)
T d2fyta1         108 SEWM  111 (311)
T ss_dssp             ECCC
T ss_pred             Eeee
Confidence            9766

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=98.99  E-value=3.1e-10  Score=100.08  Aligned_cols=80  Identities=19%  Similarity=0.091  Sum_probs=61.3

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHH---HHHHHhhcC-CCeEEEEcCCCCchhh-cccCCCcc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGR---DLVNMAKKR-TNVIPIIEDARHPAKY-RMLVGMVD  215 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~---~l~~~a~~~-~nV~~i~~D~~~~~~~-~~~~~~fD  215 (264)
                      +.++.+|||++|++|.++++++..  ...+|++||+|+.+++   ++.+.|... .+++++++|+.+..+. .....+||
T Consensus       142 ~~~g~~VLdlf~~~G~~sl~aa~~--ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD  219 (317)
T d2b78a2         142 SAAGKTVLNLFSYTAAFSVAAAMG--GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYD  219 (317)
T ss_dssp             TTBTCEEEEETCTTTHHHHHHHHT--TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             hhCCCceeecCCCCcHHHHHHHhC--CCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCC
Confidence            668999999999999999988764  4668999999976654   334444433 3899999999876432 12235899


Q ss_pred             EEEEcCC
Q 024665          216 VIFSDVA  222 (264)
Q Consensus       216 ~V~~d~p  222 (264)
                      +|++|||
T Consensus       220 ~Ii~DPP  226 (317)
T d2b78a2         220 IIIIDPP  226 (317)
T ss_dssp             EEEECCC
T ss_pred             EEEEcCh
Confidence            9999999

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.97  E-value=1.1e-09  Score=89.90  Aligned_cols=95  Identities=13%  Similarity=0.078  Sum_probs=75.4

Q ss_pred             chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCC
Q 024665          125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARH  203 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~  203 (264)
                      .+-|..+++..|.   ++|+..|||++||+|..|.++++.+ +.++|||+|.++.|++...+.... ..++.+++.++.+
T Consensus         8 ~pVll~evi~~l~---~~~~~~~lD~t~G~Gghs~~il~~~-~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~   83 (192)
T d1m6ya2           8 IPVMVREVIEFLK---PEDEKIILDCTVGEGGHSRAILEHC-PGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYRE   83 (192)
T ss_dssp             CCTTHHHHHHHHC---CCTTCEEEETTCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGG
T ss_pred             CchHHHHHHHhhC---CCCCCEEEEecCCCcHHHHHHHhcC-CCCeEEEeechHHHHHHHHHhhccccccccchhHHHhh
Confidence            4556666776665   8999999999999999999999997 679999999999887666555443 3489999999887


Q ss_pred             chhh--cccCCCccEEEEcCCC
Q 024665          204 PAKY--RMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       204 ~~~~--~~~~~~fD~V~~d~p~  223 (264)
                      ...+  ....++||.|++|...
T Consensus        84 ~~~~~~~~~~~~vdgIl~DlGv  105 (192)
T d1m6ya2          84 ADFLLKTLGIEKVDGILMDLGV  105 (192)
T ss_dssp             HHHHHHHTTCSCEEEEEEECSC
T ss_pred             HHHHHHHcCCCCcceeeeccch
Confidence            6432  1235689999999773

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=98.96  E-value=2.2e-10  Score=93.96  Aligned_cols=83  Identities=18%  Similarity=0.237  Sum_probs=59.7

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      +.|.++|||||||+|.++..++       ++++||+|+.++    +.++.+ ++++++.|+.+++   ...++||+|++.
T Consensus        34 ~~~~~~vLDiGcG~G~~~~~~~-------~~~giD~s~~~~----~~a~~~-~~~~~~~d~~~l~---~~~~~fD~I~~~   98 (208)
T d1vlma_          34 LLPEGRGVEIGVGTGRFAVPLK-------IKIGVEPSERMA----EIARKR-GVFVLKGTAENLP---LKDESFDFALMV   98 (208)
T ss_dssp             HCCSSCEEEETCTTSTTHHHHT-------CCEEEESCHHHH----HHHHHT-TCEEEECBTTBCC---SCTTCEEEEEEE
T ss_pred             hCCCCeEEEECCCCcccccccc-------eEEEEeCChhhc----cccccc-ccccccccccccc---cccccccccccc
Confidence            4567799999999999987774       469999999774    344433 7999999998875   245789999987


Q ss_pred             CC-----CchHHHHHHHHHhCCC
Q 024665          221 VA-----QPDQVCFLCLILFQPI  238 (264)
Q Consensus       221 ~p-----~~~~~~~~~~~~l~~~  238 (264)
                      ..     .|.+......+.++|+
T Consensus        99 ~~l~h~~d~~~~l~~~~~~L~pg  121 (208)
T d1vlma_          99 TTICFVDDPERALKEAYRILKKG  121 (208)
T ss_dssp             SCGGGSSCHHHHHHHHHHHEEEE
T ss_pred             cccccccccccchhhhhhcCCCC
Confidence            55     3444444444444443

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.95  E-value=1.9e-09  Score=94.66  Aligned_cols=77  Identities=22%  Similarity=0.204  Sum_probs=59.4

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHH--HHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRS--GRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIF  218 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~--~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~  218 (264)
                      +.++++|||||||+|.+++.+|+.  .+.+|+|||.|+.+  +.+.++.+....+|+++++|+.++.   ...++||+|+
T Consensus        31 ~~~~~~VLDiGcG~G~ls~~aa~~--Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~---~~~~~~D~iv  105 (316)
T d1oria_          31 LFKDKVVLDVGSGTGILCMFAAKA--GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVE---LPVEKVDIII  105 (316)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCC---CSSSCEEEEE
T ss_pred             cCCcCEEEEEecCCcHHHHHHHHh--CCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcc---cccceeEEEe
Confidence            568999999999999999988875  34589999999644  2233344444558999999999865   2346899999


Q ss_pred             EcCC
Q 024665          219 SDVA  222 (264)
Q Consensus       219 ~d~p  222 (264)
                      ++..
T Consensus       106 s~~~  109 (316)
T d1oria_         106 SEWM  109 (316)
T ss_dssp             ECCC
T ss_pred             eeee
Confidence            9766

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.94  E-value=2e-09  Score=94.96  Aligned_cols=77  Identities=17%  Similarity=0.187  Sum_probs=59.4

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHH--HHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRS--GRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIF  218 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~--~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~  218 (264)
                      +.++++|||||||+|.+++.+|+.  .+.+|+|+|.|+.+  +++.++.+....+|+++++|+.+..   ...++||+|+
T Consensus        36 ~~~~~~VLDlGcGtG~ls~~aa~~--Ga~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~---~~~~~~D~i~  110 (328)
T d1g6q1_          36 LFKDKIVLDVGCGTGILSMFAAKH--GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVH---LPFPKVDIII  110 (328)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHT--CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSC---CSSSCEEEEE
T ss_pred             cCCcCEEEEeCCCCCHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhcc---CcccceeEEE
Confidence            568899999999999999988876  35699999999633  3333344444558999999998865   2357899999


Q ss_pred             EcCC
Q 024665          219 SDVA  222 (264)
Q Consensus       219 ~d~p  222 (264)
                      +...
T Consensus       111 se~~  114 (328)
T d1g6q1_         111 SEWM  114 (328)
T ss_dssp             ECCC
T ss_pred             EEec
Confidence            9765

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.2e-09  Score=94.84  Aligned_cols=92  Identities=17%  Similarity=0.148  Sum_probs=65.6

Q ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh-----------cCCCe
Q 024665          126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK-----------KRTNV  194 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~-----------~~~nV  194 (264)
                      ..+...++..+.   ++++++|||+|||+|.+++.+|... +..+|+|||+|+.+++.+.++..           ...+|
T Consensus       137 ~~~~~~~~~~~~---l~~~~~vlD~GcG~G~~~~~~a~~~-~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i  212 (328)
T d1nw3a_         137 FDLVAQMIDEIK---MTDDDLFVDLGSGVGQVVLQVAAAT-NCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEY  212 (328)
T ss_dssp             HHHHHHHHHHSC---CCTTCEEEEETCTTSHHHHHHHHHC-CCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCE
T ss_pred             HHHHHHHHHHcC---CCCCCEEEEcCCCCCHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCce
Confidence            455566665544   9999999999999999999999875 35689999999877543332221           12489


Q ss_pred             EEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665          195 IPIIEDARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       195 ~~i~~D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      +++++|+.+.+.. .....+|+|+++..
T Consensus       213 ~~~~gd~~~~~~~-~~~~~advi~~~~~  239 (328)
T d1nw3a_         213 TLERGDFLSEEWR-ERIANTSVIFVNNF  239 (328)
T ss_dssp             EEEECCTTSHHHH-HHHHHCSEEEECCT
T ss_pred             EEEECcccccccc-cccCcceEEEEcce
Confidence            9999999886521 11124688988644

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.93  E-value=3.2e-09  Score=86.07  Aligned_cols=73  Identities=30%  Similarity=0.332  Sum_probs=60.0

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhh-----cccCCCcc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY-----RMLVGMVD  215 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~-----~~~~~~fD  215 (264)
                      ++|+.+||||||+||.|+..+++.+.+.++|+++|+.+.         ....++.++++|..+....     .....+||
T Consensus        20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~---------~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~D   90 (180)
T d1ej0a_          20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM---------DPIVGVDFLQGDFRDELVMKALLERVGDSKVQ   90 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC---------CCCTTEEEEESCTTSHHHHHHHHHHHTTCCEE
T ss_pred             cCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc---------cccCCceEeecccccchhhhhhhhhccCccee
Confidence            689999999999999999999999988899999998861         1235899999999875421     12345799


Q ss_pred             EEEEcCC
Q 024665          216 VIFSDVA  222 (264)
Q Consensus       216 ~V~~d~p  222 (264)
                      +|++|++
T Consensus        91 lVlSD~a   97 (180)
T d1ej0a_          91 VVMSDMA   97 (180)
T ss_dssp             EEEECCC
T ss_pred             EEEeccc
Confidence            9999988

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.92  E-value=2.9e-09  Score=91.70  Aligned_cols=89  Identities=17%  Similarity=0.186  Sum_probs=64.9

Q ss_pred             HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCCC
Q 024665          127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARH  203 (264)
Q Consensus       127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~~  203 (264)
                      -++..++..+.   -.+-.+|||+|||+|..++.++..  +..+|+|+|+|+.+++-+.+++.+.   .++.+++.|..+
T Consensus        97 ~lv~~~~~~~~---~~~~~~vld~g~GsG~i~~~la~~--~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~  171 (271)
T d1nv8a_          97 ELVELALELIR---KYGIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLE  171 (271)
T ss_dssp             HHHHHHHHHHH---HHTCCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTG
T ss_pred             hhhhhhhhhhc---cccccEEEEeeeeeehhhhhhhhc--ccceeeechhhhhHHHHHHHHHHHcCCCceeEEeeccccc
Confidence            34444443333   233458999999999999999865  6889999999998865555554432   367888899877


Q ss_pred             chhhcccCCCccEEEEcCC
Q 024665          204 PAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       204 ~~~~~~~~~~fD~V~~d~p  222 (264)
                      +..  ...++||+|++|||
T Consensus       172 ~~~--~~~~~fDlIVsNPP  188 (271)
T d1nv8a_         172 PFK--EKFASIEMILSNPP  188 (271)
T ss_dssp             GGG--GGTTTCCEEEECCC
T ss_pred             ccc--cccCcccEEEEccc
Confidence            543  23468999999999

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.92  E-value=5.9e-10  Score=97.79  Aligned_cols=79  Identities=19%  Similarity=0.079  Sum_probs=60.3

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHH---HhhcCC-CeEEEEcCCCCchhh-cccCCCcc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN---MAKKRT-NVIPIIEDARHPAKY-RMLVGMVD  215 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~---~a~~~~-nV~~i~~D~~~~~~~-~~~~~~fD  215 (264)
                      ..++.+|||++|++|.+++++|..   ..+|++||.|+.+++.+.+   .|.... +++++++|+.++... ......||
T Consensus       130 ~~~~~rVLdlf~~tG~~sl~aa~~---GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD  206 (309)
T d2igta1         130 ADRPLKVLNLFGYTGVASLVAAAA---GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYD  206 (309)
T ss_dssp             SSSCCEEEEETCTTCHHHHHHHHT---TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBS
T ss_pred             ccCCCeEEEecCCCcHHHHHHHhC---CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCC
Confidence            456889999999999999999864   3489999999877544444   333333 699999999876532 11235899


Q ss_pred             EEEEcCC
Q 024665          216 VIFSDVA  222 (264)
Q Consensus       216 ~V~~d~p  222 (264)
                      +||+|||
T Consensus       207 ~IilDPP  213 (309)
T d2igta1         207 IILTDPP  213 (309)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9999999

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=5.1e-09  Score=89.10  Aligned_cols=80  Identities=8%  Similarity=-0.060  Sum_probs=58.6

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHH---HHHhhcCCCeEEEEcCCCCchh---hcccCCCccE
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDL---VNMAKKRTNVIPIIEDARHPAK---YRMLVGMVDV  216 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l---~~~a~~~~nV~~i~~D~~~~~~---~~~~~~~fD~  216 (264)
                      +.-+|||+|||+|.+++.||... +..+|+|+|+|+.+++-+   ++.+....++.+++.+..+...   .....++||+
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~-~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~  139 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF  139 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred             ccceEEEeCCCchHHHHHHHHhC-CCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence            44589999999999999999887 577999999998775443   3444444578888876644321   0112357999


Q ss_pred             EEEcCCC
Q 024665          217 IFSDVAQ  223 (264)
Q Consensus       217 V~~d~p~  223 (264)
                      |++|||.
T Consensus       140 ivsNPPY  146 (250)
T d2h00a1         140 CMCNPPF  146 (250)
T ss_dssp             EEECCCC
T ss_pred             EEecCcc
Confidence            9999993

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=98.82  E-value=1.2e-08  Score=86.45  Aligned_cols=75  Identities=15%  Similarity=0.092  Sum_probs=57.2

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHH---HhhcCCCeEEEEcCCCCchhhcccCCCccEE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN---MAKKRTNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~---~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      +.+..+|||||||+|.++..+++.. |..+++++|+++ +++...+   ......+|+++.+|+.+..     ..+||+|
T Consensus        78 ~~~~~~VLDvGcG~G~~~~~la~~~-p~~~~~~~D~~~-~~~~a~~~~~~~~~~~rv~~~~~D~~~~~-----~~~~D~v  150 (253)
T d1tw3a2          78 WTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEMAG-TVDTARSYLKDEGLSDRVDVVEGDFFEPL-----PRKADAI  150 (253)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEECTT-HHHHHHHHHHHTTCTTTEEEEECCTTSCC-----SSCEEEE
T ss_pred             CccCCEEEEeCCCCCHHHHHHHHhc-ceeEEEEccCHH-HHHHHHHHHHHhhcccchhhccccchhhc-----ccchhhe
Confidence            7778899999999999999999986 678999999864 3333332   2333458999999987643     3579999


Q ss_pred             EEcCC
Q 024665          218 FSDVA  222 (264)
Q Consensus       218 ~~d~p  222 (264)
                      ++...
T Consensus       151 ~~~~v  155 (253)
T d1tw3a2         151 ILSFV  155 (253)
T ss_dssp             EEESC
T ss_pred             eeccc
Confidence            97654

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=98.80  E-value=4.6e-09  Score=87.35  Aligned_cols=71  Identities=17%  Similarity=0.106  Sum_probs=55.3

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      ++.+|||+|||+|.++..+++..   .+|++||+|+++++.+.+.  ...|+.++++|+.++.    +.++||+|++.-.
T Consensus        20 ~~~~VLDiGcG~G~~~~~l~~~g---~~v~giD~s~~~i~~a~~~--~~~~~~~~~~~~~~~~----~~~~fD~I~~~~v   90 (225)
T d2p7ia1          20 RPGNLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISHAQGR--LKDGITYIHSRFEDAQ----LPRRYDNIVLTHV   90 (225)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTC---SCEEEEESCHHHHHHHHHH--SCSCEEEEESCGGGCC----CSSCEEEEEEESC
T ss_pred             CCCcEEEEeCCCcHHHHHHHHcC---CeEEEEeCcHHHhhhhhcc--cccccccccccccccc----cccccccccccce
Confidence            45689999999999999998763   3799999999876444322  2358999999988764    3578999998654

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.79  E-value=3e-10  Score=96.73  Aligned_cols=88  Identities=16%  Similarity=0.126  Sum_probs=66.8

Q ss_pred             HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchh
Q 024665          127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK  206 (264)
Q Consensus       127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~  206 (264)
                      .++..|+..++   +.++++|||+|||+|.+|..|++..   .+|+|||+++++++.+.+.....+|++++++|+.+.+.
T Consensus        16 ~ii~kIv~~~~---~~~~d~VLEIGpG~G~LT~~L~~~~---~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~   89 (245)
T d1yuba_          16 KVLNQIIKQLN---LKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQF   89 (245)
T ss_dssp             TTHHHHHHHCC---CCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTC
T ss_pred             HHHHHHHHhcC---CCCCCeEEEECCCccHHHHHHHhhc---CceeEeeecccchhhhhhhhhhccchhhhhhhhhcccc
Confidence            34555665444   8899999999999999999999883   48999999987644433333334589999999998652


Q ss_pred             hcccCCCccEEEEcCCC
Q 024665          207 YRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       207 ~~~~~~~fD~V~~d~p~  223 (264)
                         ....++.|++|.|.
T Consensus        90 ---~~~~~~~vv~NLPY  103 (245)
T d1yuba_          90 ---PNKQRYKIVGNIPY  103 (245)
T ss_dssp             ---CCSSEEEEEEECCS
T ss_pred             ---ccceeeeEeeeeeh
Confidence               33567889999993

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.78  E-value=2.7e-08  Score=81.62  Aligned_cols=81  Identities=16%  Similarity=0.105  Sum_probs=61.3

Q ss_pred             HHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhh
Q 024665          128 LAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY  207 (264)
Q Consensus       128 l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~  207 (264)
                      ++..++..+.   .+++++|||.|||+|.++..+.+.......|+++|+++.+.       ....+...++.|.....  
T Consensus         7 i~~~m~~l~~---~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~-------~~~~~~~~~~~~~~~~~--   74 (223)
T d2ih2a1           7 VVDFMVSLAE---APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKAL-------DLPPWAEGILADFLLWE--   74 (223)
T ss_dssp             HHHHHHHHCC---CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTC-------CCCTTEEEEESCGGGCC--
T ss_pred             HHHHHHHhcC---CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHH-------hhcccceeeeeehhccc--
Confidence            3444444443   77899999999999999999988877778899999997431       12235677888876654  


Q ss_pred             cccCCCccEEEEcCC
Q 024665          208 RMLVGMVDVIFSDVA  222 (264)
Q Consensus       208 ~~~~~~fD~V~~d~p  222 (264)
                        ...+||+|++|+|
T Consensus        75 --~~~~fd~ii~npP   87 (223)
T d2ih2a1          75 --PGEAFDLILGNPP   87 (223)
T ss_dssp             --CSSCEEEEEECCC
T ss_pred             --cccccceecccCc
Confidence              2368999999999

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.78  E-value=1.6e-08  Score=91.58  Aligned_cols=92  Identities=17%  Similarity=0.229  Sum_probs=63.7

Q ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc----------C-CCe
Q 024665          126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK----------R-TNV  194 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~----------~-~nV  194 (264)
                      ..++..++..+.   ++|+++|||||||+|.+++.+|...+ ..+|+|||+++.+++.+.+++..          . .++
T Consensus       202 ~~~i~~Il~~l~---Lkpgd~fLDLGCG~G~~vl~aA~~~g-~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~  277 (406)
T d1u2za_         202 PNFLSDVYQQCQ---LKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNV  277 (406)
T ss_dssp             HHHHHHHHHHTT---CCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCE
T ss_pred             HHHHHHHHHHhC---CCCCCEEEeCCCCCcHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccc
Confidence            455666665544   99999999999999999999999875 45899999998775544443321          1 134


Q ss_pred             EE-EEcCCCCchhhcccCCCccEEEEcC
Q 024665          195 IP-IIEDARHPAKYRMLVGMVDVIFSDV  221 (264)
Q Consensus       195 ~~-i~~D~~~~~~~~~~~~~fD~V~~d~  221 (264)
                      .+ ++.|..+...+......+|+|+++-
T Consensus       278 ~~~~~~~f~~~~~~d~~~~~adVV~inn  305 (406)
T d1u2za_         278 EFSLKKSFVDNNRVAELIPQCDVILVNN  305 (406)
T ss_dssp             EEEESSCSTTCHHHHHHGGGCSEEEECC
T ss_pred             eeeeeechhhccccccccccceEEEEec
Confidence            44 4566555443333345789999864

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.72  E-value=1.7e-08  Score=87.07  Aligned_cols=77  Identities=13%  Similarity=-0.031  Sum_probs=55.0

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC------CeEEEEcCCCCchhhcccCCCc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT------NVIPIIEDARHPAKYRMLVGMV  214 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~------nV~~i~~D~~~~~~~~~~~~~f  214 (264)
                      .+++.+|||+|||+|.++..||+.   ..+|+|||+|+.|++.+.+.+....      +..+...|...........+.|
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~---g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f  130 (292)
T d1xvaa_          54 QHGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGF  130 (292)
T ss_dssp             HTTCCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCE
T ss_pred             hcCCCEEEEecCCCcHHHHHHHHc---CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCc
Confidence            566789999999999999999986   2489999999999766655543321      4556666665433211234689


Q ss_pred             cEEEEc
Q 024665          215 DVIFSD  220 (264)
Q Consensus       215 D~V~~d  220 (264)
                      |+|++-
T Consensus       131 d~v~~~  136 (292)
T d1xvaa_         131 DAVICL  136 (292)
T ss_dssp             EEEEEC
T ss_pred             eEEEEe
Confidence            999873

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=1e-07  Score=82.09  Aligned_cols=88  Identities=14%  Similarity=0.231  Sum_probs=69.6

Q ss_pred             HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCCC
Q 024665          127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARH  203 (264)
Q Consensus       127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~~  203 (264)
                      .++..|+..++   +.+++.|||+|+|+|.+|..|++..   .+|+|||++++++..+.+.....   .|++++++|+.+
T Consensus         8 ~i~~kIv~~~~---~~~~d~VlEIGPG~G~LT~~Ll~~~---~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~   81 (278)
T d1zq9a1           8 LIINSIIDKAA---LRPTDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLK   81 (278)
T ss_dssp             HHHHHHHHHTC---CCTTCEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTT
T ss_pred             HHHHHHHHHhC---CCCCCEEEEECCCchHHHHHHHhcC---CcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhh
Confidence            45555655444   8899999999999999999999883   38999999999987777655432   489999999987


Q ss_pred             chhhcccCCCccEEEEcCCCch
Q 024665          204 PAKYRMLVGMVDVIFSDVAQPD  225 (264)
Q Consensus       204 ~~~~~~~~~~fD~V~~d~p~~~  225 (264)
                      ..     ...++.|++|.|..-
T Consensus        82 ~~-----~~~~~~vV~NLPY~I   98 (278)
T d1zq9a1          82 TD-----LPFFDTCVANLPYQI   98 (278)
T ss_dssp             SC-----CCCCSEEEEECCGGG
T ss_pred             hh-----hhhhhhhhcchHHHH
Confidence            64     245678999999533

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.63  E-value=2.1e-08  Score=87.90  Aligned_cols=79  Identities=18%  Similarity=0.136  Sum_probs=59.0

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCC----CCEEEEEeCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhcccCCCc
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGP----NGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRMLVGMV  214 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~----~g~V~avD~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~~~~~f  214 (264)
                      ..+++.+|||.|||+|.+.+.+.+.+..    ..+++|+|+++.+++.+...+. ...++.+++.|.....    ...+|
T Consensus       114 ~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~----~~~~f  189 (328)
T d2f8la1         114 QKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANL----LVDPV  189 (328)
T ss_dssp             TTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCC----CCCCE
T ss_pred             CCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccccccc----ccccc
Confidence            3677889999999999999999876642    3479999999877543333222 2347788888876543    34689


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+|++|||
T Consensus       190 D~vi~NPP  197 (328)
T d2f8la1         190 DVVISDLP  197 (328)
T ss_dssp             EEEEEECC
T ss_pred             cccccCCC
Confidence            99999999

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.62  E-value=1.3e-07  Score=80.15  Aligned_cols=76  Identities=17%  Similarity=0.088  Sum_probs=57.2

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHH---HHHhhcCCCeEEEEcCCCCchhhcccCCCccE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDL---VNMAKKRTNVIPIIEDARHPAKYRMLVGMVDV  216 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l---~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~  216 (264)
                      .+.+..+|||||||+|.++..+++.. |..+++++|+. .+++..   ++......+++++.+|..++.     ...+|+
T Consensus        78 d~~~~~~vlDvG~G~G~~~~~l~~~~-P~~~~~~~Dlp-~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~-----p~~~D~  150 (256)
T d1qzza2          78 DWSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVELA-GPAERARRRFADAGLADRVTVAEGDFFKPL-----PVTADV  150 (256)
T ss_dssp             CCTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEECH-HHHHHHHHHHHHTTCTTTEEEEECCTTSCC-----SCCEEE
T ss_pred             CCccCCEEEEECCCCCHHHHHHHHhh-cCcEEEEecCh-HHHHHHHHHHhhcCCcceeeeeeeeccccc-----cccchh
Confidence            37778899999999999999999985 68899999984 443332   233333458999999987643     356999


Q ss_pred             EEEcCC
Q 024665          217 IFSDVA  222 (264)
Q Consensus       217 V~~d~p  222 (264)
                      |++...
T Consensus       151 v~~~~v  156 (256)
T d1qzza2         151 VLLSFV  156 (256)
T ss_dssp             EEEESC
T ss_pred             hhcccc
Confidence            997544

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=5.4e-08  Score=81.06  Aligned_cols=98  Identities=20%  Similarity=0.248  Sum_probs=70.2

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHH---HHHHHHHhhcCCCeEEEEcCCCCchhh---cccCCCc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRS---GRDLVNMAKKRTNVIPIIEDARHPAKY---RMLVGMV  214 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~---~~~l~~~a~~~~nV~~i~~D~~~~~~~---~~~~~~f  214 (264)
                      +..-.+|||+||++|+.++.+|+.+.+.++|+++|.+++.   +++..+.+....+|+++++|+.+..+.   .....+|
T Consensus        57 ~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~f  136 (219)
T d2avda1          57 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF  136 (219)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred             ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCc
Confidence            3445699999999999999999998878999999999755   444455555556899999999775421   1124589


Q ss_pred             cEEEEcCCCch--HHHHHHHHHhCCC
Q 024665          215 DVIFSDVAQPD--QVCFLCLILFQPI  238 (264)
Q Consensus       215 D~V~~d~p~~~--~~~~~~~~~l~~~  238 (264)
                      |+||.|.....  ......+..++++
T Consensus       137 D~ifiD~dk~~y~~~~~~~~~lL~~G  162 (219)
T d2avda1         137 DVAVVDADKENCSAYYERCLQLLRPG  162 (219)
T ss_dssp             EEEEECSCSTTHHHHHHHHHHHEEEE
T ss_pred             cEEEEeCCHHHHHHHHHHHHHHhcCC
Confidence            99999976322  2233444444544

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.58  E-value=3e-08  Score=84.39  Aligned_cols=96  Identities=9%  Similarity=0.095  Sum_probs=68.7

Q ss_pred             HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchh
Q 024665          127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK  206 (264)
Q Consensus       127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~  206 (264)
                      .++..|+..++   +.+++.|||+|||+|.+|..|++..   .+|+|||+++++++.+.+.....+|++++++|+.++..
T Consensus         8 ~~~~~Iv~~~~---~~~~d~vlEIGpG~G~LT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~~   81 (252)
T d1qyra_           8 FVIDSIVSAIN---PQKGQAMVEIGPGLAALTEPVGERL---DQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNF   81 (252)
T ss_dssp             HHHHHHHHHHC---CCTTCCEEEECCTTTTTHHHHHTTC---SCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCH
T ss_pred             HHHHHHHHhcC---CCCCCEEEEECCCchHHHHHHHccC---CceEEEEeccchhHHHHHHhhhccchhHHhhhhhhhcc
Confidence            34555555444   8899999999999999999999873   47999999998876665533334589999999987542


Q ss_pred             hcc--cCCCccEEEEcCCCchHHH
Q 024665          207 YRM--LVGMVDVIFSDVAQPDQVC  228 (264)
Q Consensus       207 ~~~--~~~~fD~V~~d~p~~~~~~  228 (264)
                      ...  .....-.|+.|.|..-...
T Consensus        82 ~~~~~~~~~~~~vvgNlPY~Iss~  105 (252)
T d1qyra_          82 GELAEKMGQPLRVFGNLPYNISTP  105 (252)
T ss_dssp             HHHHHHHTSCEEEEEECCTTTHHH
T ss_pred             cccccccCCCeEEEecchHHHHHH
Confidence            111  1123347889999544333

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.55  E-value=1e-07  Score=79.01  Aligned_cols=78  Identities=19%  Similarity=0.281  Sum_probs=61.1

Q ss_pred             CEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHH---HHHHHhhcCCCeEEEEcCCCCchhh---cccCCCccEEE
Q 024665          145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGR---DLVNMAKKRTNVIPIIEDARHPAKY---RMLVGMVDVIF  218 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~---~l~~~a~~~~nV~~i~~D~~~~~~~---~~~~~~fD~V~  218 (264)
                      .+|||+||++|..|+.||+.+.+.++|+++|+++.+.+   ..++.+....+|+++++|+.+..+.   .....+||+|+
T Consensus        58 k~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~if  137 (214)
T d2cl5a1          58 SLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVF  137 (214)
T ss_dssp             SEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEEEE
T ss_pred             CEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccceee
Confidence            59999999999999999998877899999999976643   4444454555899999999875321   11235799999


Q ss_pred             EcCC
Q 024665          219 SDVA  222 (264)
Q Consensus       219 ~d~p  222 (264)
                      +|..
T Consensus       138 iD~~  141 (214)
T d2cl5a1         138 LDHW  141 (214)
T ss_dssp             ECSC
T ss_pred             eccc
Confidence            9965

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=5.6e-08  Score=82.98  Aligned_cols=98  Identities=15%  Similarity=0.005  Sum_probs=61.8

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhC-----CCCEEEEEeCChHHHHHHHHHhhcCC---CeEEE--EcCCCCchh---h
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVG-----PNGVVYAVEFSHRSGRDLVNMAKKRT---NVIPI--IEDARHPAK---Y  207 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~-----~~g~V~avD~s~~~~~~l~~~a~~~~---nV~~i--~~D~~~~~~---~  207 (264)
                      .++..+|||+|||+|.++..++..+.     ....+++||.|+.|++.+.+......   ++.+.  +.++.+...   .
T Consensus        38 ~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (280)
T d1jqea_          38 TKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLE  117 (280)
T ss_dssp             TCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTT
T ss_pred             CCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcc
Confidence            45666899999999999998877642     12468999999988776666554332   44443  333322110   0


Q ss_pred             cccCCCccEEEEcCC-----CchHHHHHHHHHhCCC
Q 024665          208 RMLVGMVDVIFSDVA-----QPDQVCFLCLILFQPI  238 (264)
Q Consensus       208 ~~~~~~fD~V~~d~p-----~~~~~~~~~~~~l~~~  238 (264)
                      ....++||+|++...     .|........+.++|.
T Consensus       118 ~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~Lkpg  153 (280)
T d1jqea_         118 KKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTN  153 (280)
T ss_dssp             SSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEE
T ss_pred             cCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCC
Confidence            123468999998544     4555555555555554

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.46  E-value=2.3e-07  Score=77.59  Aligned_cols=96  Identities=13%  Similarity=0.047  Sum_probs=69.7

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHH---HHHHHHhhcCCCeEEEEcCCCCchhh----cccCCCcc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSG---RDLVNMAKKRTNVIPIIEDARHPAKY----RMLVGMVD  215 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~---~~l~~~a~~~~nV~~i~~D~~~~~~~----~~~~~~fD  215 (264)
                      .-.+|||+||++|+.++.||+.+.+.++|+.+|.++..+   ++..+.+....+|+++++|+.+..+.    ....++||
T Consensus        59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD  138 (227)
T d1susa1          59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD  138 (227)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBS
T ss_pred             CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCcee
Confidence            446999999999999999999998889999999997553   34444444445899999999875432    01245899


Q ss_pred             EEEEcCCC--chHHHHHHHHHhCCC
Q 024665          216 VIFSDVAQ--PDQVCFLCLILFQPI  238 (264)
Q Consensus       216 ~V~~d~p~--~~~~~~~~~~~l~~~  238 (264)
                      +||.|...  -.......+..+.++
T Consensus       139 ~iFiDa~k~~y~~~~e~~~~ll~~g  163 (227)
T d1susa1         139 FIFVDADKDNYLNYHKRLIDLVKVG  163 (227)
T ss_dssp             EEEECSCSTTHHHHHHHHHHHBCTT
T ss_pred             EEEeccchhhhHHHHHHHHhhcCCC
Confidence            99999873  223344455556665

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.32  E-value=7.9e-07  Score=71.72  Aligned_cols=88  Identities=15%  Similarity=0.157  Sum_probs=67.2

Q ss_pred             HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchh
Q 024665          127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK  206 (264)
Q Consensus       127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~  206 (264)
                      -|..+++..|.   ++++..+||+.+|.|..|..+.+.   .++|+|+|.++.+++...+  ....++.+++.+..++..
T Consensus         5 Vll~Evl~~l~---~~~g~~~vD~T~G~GGhs~~iL~~---~~~viaiD~D~~ai~~a~~--~~~~~~~~~~~~f~~~~~   76 (182)
T d1wg8a2           5 VLYQEALDLLA---VRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKG--LHLPGLTVVQGNFRHLKR   76 (182)
T ss_dssp             TTHHHHHHHHT---CCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHH--TCCTTEEEEESCGGGHHH
T ss_pred             hHHHHHHHhcC---CCCCCEEEEeCCCCcHHHHHHhcc---cCcEEEEhhhhhHHHHHhh--ccccceeEeehHHHHHHH
Confidence            45556665555   899999999999999999888874   5799999999977544322  234589999999988654


Q ss_pred             h--cccCCCccEEEEcCC
Q 024665          207 Y--RMLVGMVDVIFSDVA  222 (264)
Q Consensus       207 ~--~~~~~~fD~V~~d~p  222 (264)
                      .  ....+.+|.|++|..
T Consensus        77 ~l~~~~~~~vdgIl~DLG   94 (182)
T d1wg8a2          77 HLAALGVERVDGILADLG   94 (182)
T ss_dssp             HHHHTTCSCEEEEEEECS
T ss_pred             HHHHcCCCccCEEEEEcc
Confidence            3  122468999999987

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=4.7e-07  Score=75.59  Aligned_cols=47  Identities=13%  Similarity=0.104  Sum_probs=36.8

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK  189 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~  189 (264)
                      ..++.+|||||||+|.+++.++..  ...+|+++|+|+.+++.+.+...
T Consensus        49 ~~~g~~vLDlGcG~G~~~~~~~~~--~~~~v~giD~S~~~i~~a~~~~~   95 (257)
T d2a14a1          49 GLQGDTLIDIGSGPTIYQVLAACD--SFQDITLSDFTDRNREELEKWLK   95 (257)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCHhHHHHhcc--ccCcEEEecCCHHHHHHHHHHHh
Confidence            467889999999999998877754  23379999999988766655543

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=98.25  E-value=7.1e-07  Score=75.43  Aligned_cols=79  Identities=15%  Similarity=0.063  Sum_probs=60.0

Q ss_pred             CCCC--CEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHH---HHHHHHHhhcC--------CCeEEEEcCCCCchhh
Q 024665          141 IKPG--ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRS---GRDLVNMAKKR--------TNVIPIIEDARHPAKY  207 (264)
Q Consensus       141 l~~g--~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~---~~~l~~~a~~~--------~nV~~i~~D~~~~~~~  207 (264)
                      ++++  .+|||+.||.|..+..+|..   .++|+++|.++.+   +++.++.+...        .|++++++|+.++.. 
T Consensus        84 l~~~~~~~VlD~TaGlG~Da~vlA~~---G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~-  159 (250)
T d2oyra1          84 IKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALT-  159 (250)
T ss_dssp             CBTTBCCCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHST-
T ss_pred             CCCCCCCEEEECCCcccHHHHHHHhC---CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHh-
Confidence            4544  38999999999999999987   3589999999754   44545544332        279999999887653 


Q ss_pred             cccCCCccEEEEcCCCc
Q 024665          208 RMLVGMVDVIFSDVAQP  224 (264)
Q Consensus       208 ~~~~~~fD~V~~d~p~~  224 (264)
                       .....||+|++||+.|
T Consensus       160 -~~~~~~DvIYlDPMFp  175 (250)
T d2oyra1         160 -DITPRPQVVYLDPMFP  175 (250)
T ss_dssp             -TCSSCCSEEEECCCCC
T ss_pred             -ccCCCCCEEEECCCCc
Confidence             2346799999999954

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.22  E-value=1e-06  Score=76.95  Aligned_cols=79  Identities=20%  Similarity=0.210  Sum_probs=60.4

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHh-------hcCCCeEEEEcCCCCchhhcccCCCcc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA-------KKRTNVIPIIEDARHPAKYRMLVGMVD  215 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a-------~~~~nV~~i~~D~~~~~~~~~~~~~fD  215 (264)
                      .-.+||.+|.|.|..+..++.. .+..+|+.||+++.+++-..+.-       ...++++++++|+++..+.  ...+||
T Consensus        77 ~pk~VLiiG~G~G~~~~~ll~~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~--~~~~yD  153 (312)
T d1uira_          77 EPKRVLIVGGGEGATLREVLKH-PTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER--TEERYD  153 (312)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTS-TTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH--CCCCEE
T ss_pred             CcceEEEeCCCchHHHHHHHhc-CCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhh--cCCccc
Confidence            3468999999999999988865 35669999999998764443321       1245899999999987642  346899


Q ss_pred             EEEEcCCCc
Q 024665          216 VIFSDVAQP  224 (264)
Q Consensus       216 ~V~~d~p~~  224 (264)
                      +|++|.+.|
T Consensus       154 vIi~D~~dp  162 (312)
T d1uira_         154 VVIIDLTDP  162 (312)
T ss_dssp             EEEEECCCC
T ss_pred             EEEEeCCCc
Confidence            999998743

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=4.2e-07  Score=77.16  Aligned_cols=45  Identities=9%  Similarity=0.028  Sum_probs=34.6

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHH
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNM  187 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~  187 (264)
                      ...+.+|||+|||+|.+++.++...  -.+|+++|+|+.|++.+.+.
T Consensus        52 ~~~g~~vLDiGcG~g~~~~~~~~~~--~~~v~~~D~S~~~i~~~~~~   96 (263)
T d2g72a1          52 EVSGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLEVNRQELGRW   96 (263)
T ss_dssp             CSCCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCHHHHHHHHHH
T ss_pred             CCCCcEEEEeccCCCHHHHHHhccc--CCeEEEEeCCHHHHHHHHHH
Confidence            4568899999999998886655442  23899999999887665443

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.18  E-value=3.7e-06  Score=71.99  Aligned_cols=104  Identities=22%  Similarity=0.151  Sum_probs=70.8

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHh------------hcCCCeEEEEcCCCCchhhcc
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA------------KKRTNVIPIIEDARHPAKYRM  209 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a------------~~~~nV~~i~~D~~~~~~~~~  209 (264)
                      .+-.+||.+|+|.|..+..++..  +..+|+.||+++.+++-..+.-            ...++++++++|+.+....  
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~--~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~--  146 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN--  146 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH--
T ss_pred             CCCceEEEecCCchHHHHHHHHh--CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhc--
Confidence            34579999999999999988764  4568999999998764443321            1235899999999876542  


Q ss_pred             cCCCccEEEEcCCCchHHHHHHHHHhCCCcHHHHHHHHHHhh-cchhh
Q 024665          210 LVGMVDVIFSDVAQPDQVCFLCLILFQPIVINNLQSVNNETK-GGIFE  256 (264)
Q Consensus       210 ~~~~fD~V~~d~p~~~~~~~~~~~~l~~~~~~~l~~~~~~Lk-~g~f~  256 (264)
                       .++||+|++|.+.|....      ...-+.+.+..+.+.|+ +|++.
T Consensus       147 -~~~yDvIi~D~~~~~~~~------~~L~t~eF~~~~~~~L~~~Gv~v  187 (276)
T d1mjfa_         147 -NRGFDVIIADSTDPVGPA------KVLFSEEFYRYVYDALNNPGIYV  187 (276)
T ss_dssp             -CCCEEEEEEECCCCC-----------TTSHHHHHHHHHHEEEEEEEE
T ss_pred             -cCCCCEEEEeCCCCCCCc------ccccCHHHHHhhHhhcCCCceEE
Confidence             468999999998664210      11224455666666666 55543

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.10  E-value=8.5e-06  Score=70.31  Aligned_cols=106  Identities=17%  Similarity=0.129  Sum_probs=70.2

Q ss_pred             CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh------cCCCeEEEEcCCCCchhhcccCCCccEE
Q 024665          144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK------KRTNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~------~~~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      -.+||-+|.|.|.++..++..- +..+|++||+++.+++-..+.-.      ..++++++++|+.+...  ....+||+|
T Consensus        90 pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~--~~~~~yDvI  166 (295)
T d1inla_          90 PKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVR--KFKNEFDVI  166 (295)
T ss_dssp             CCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGG--GCSSCEEEE
T ss_pred             CceEEEecCCchHHHHHHHhcC-CCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHh--cCCCCCCEE
Confidence            3699999999999998888752 45689999999877544333211      24589999999988664  245689999


Q ss_pred             EEcCCCchHHHHHHHHHhCCCcHHHHHHHHHHhh-cchhhh
Q 024665          218 FSDVAQPDQVCFLCLILFQPIVINNLQSVNNETK-GGIFEF  257 (264)
Q Consensus       218 ~~d~p~~~~~~~~~~~~l~~~~~~~l~~~~~~Lk-~g~f~~  257 (264)
                      ++|.+.|+...     ....-+.+.+..+.+.|+ +|+|.+
T Consensus       167 i~D~~dp~~~~-----~~~L~t~efy~~~~~~L~~~Gi~v~  202 (295)
T d1inla_         167 IIDSTDPTAGQ-----GGHLFTEEFYQACYDALKEDGVFSA  202 (295)
T ss_dssp             EEEC---------------CCSHHHHHHHHHHEEEEEEEEE
T ss_pred             EEcCCCCCcCc-----hhhhccHHHHHHHHhhcCCCcEEEE
Confidence            99988664221     111225566666667776 665543

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.04  E-value=2e-05  Score=64.48  Aligned_cols=79  Identities=15%  Similarity=0.148  Sum_probs=59.3

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc--CCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--RTNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~--~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      +..+|||+|||.|.-++.+|-. .|+.+|+.+|.+.+-+..+.+....  ..||++++..+.+...    ..+||+|++.
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~-~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~----~~~fD~V~sR  139 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIV-RPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS----EPPFDGVISR  139 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHH-CTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCC----CSCEEEEECS
T ss_pred             cCCceeeeeccCCceeeehhhh-cccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhcc----ccccceehhh
Confidence            4579999999999999999965 5889999999995443333333322  2489999999988642    3589999987


Q ss_pred             CCCchH
Q 024665          221 VAQPDQ  226 (264)
Q Consensus       221 ~p~~~~  226 (264)
                      +-.+-.
T Consensus       140 A~~~~~  145 (207)
T d1jsxa_         140 AFASLN  145 (207)
T ss_dssp             CSSSHH
T ss_pred             hhcCHH
Confidence            764433

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=1.6e-05  Score=68.23  Aligned_cols=105  Identities=16%  Similarity=0.118  Sum_probs=70.6

Q ss_pred             CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHh------hcCCCeEEEEcCCCCchhhcccCCCccEE
Q 024665          144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA------KKRTNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a------~~~~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      -++||-+|-|.|..+..+.+.- +..+|+.||+++.+++-+.+.-      ...+++++++.|++.....  ..++||+|
T Consensus        79 pk~vLiiGgG~G~~~~~~l~~~-~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~--~~~~yDvI  155 (285)
T d2o07a1          79 PRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ--NQDAFDVI  155 (285)
T ss_dssp             CCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHT--CSSCEEEE
T ss_pred             cCeEEEeCCCchHHHHHHHHcC-CcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhc--CCCCCCEE
Confidence            3689999999999999998662 3569999999987764444332      2346999999999886642  34689999


Q ss_pred             EEcCCCchHHHHHHHHHhCCCcHHHHHHHHHHhh-cchhhh
Q 024665          218 FSDVAQPDQVCFLCLILFQPIVINNLQSVNNETK-GGIFEF  257 (264)
Q Consensus       218 ~~d~p~~~~~~~~~~~~l~~~~~~~l~~~~~~Lk-~g~f~~  257 (264)
                      ++|.+.|...      ....-+.+.+..+.+.|+ +|+|.+
T Consensus       156 i~D~~~p~~~------~~~L~t~eF~~~~~~~L~~~Gi~v~  190 (285)
T d2o07a1         156 ITDSSDPMGP------AESLFKESYYQLMKTALKEDGVLCC  190 (285)
T ss_dssp             EEECC-----------------CHHHHHHHHHEEEEEEEEE
T ss_pred             EEcCCCCCCc------ccccccHHHHHHHHHhcCCCCeEEE
Confidence            9999866421      111225556666667777 666543

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.02  E-value=1.1e-05  Score=68.75  Aligned_cols=104  Identities=15%  Similarity=0.129  Sum_probs=71.6

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHh------hcCCCeEEEEcCCCCchhhcccCCCccE
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA------KKRTNVIPIIEDARHPAKYRMLVGMVDV  216 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a------~~~~nV~~i~~D~~~~~~~~~~~~~fD~  216 (264)
                      +-++||-+|-|.|..+..++..- +..+|+.||+++.+++-+.+.-      ...+++++++.|+......  ...+||+
T Consensus        75 ~p~~vLiiGgG~G~~~~~~l~~~-~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~--~~~~yDv  151 (274)
T d1iy9a_          75 NPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAK--SENQYDV  151 (274)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHT--CCSCEEE
T ss_pred             CcceEEecCCCCcHHHHHHHhcC-CcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhh--cCCCCCE
Confidence            34699999999999999998752 4569999999997764444332      1235899999999886642  3468999


Q ss_pred             EEEcCCCchHHHHHHHHHhCCCcHHHHHHHHHHhh-cchh
Q 024665          217 IFSDVAQPDQVCFLCLILFQPIVINNLQSVNNETK-GGIF  255 (264)
Q Consensus       217 V~~d~p~~~~~~~~~~~~l~~~~~~~l~~~~~~Lk-~g~f  255 (264)
                      |++|.+.|...      ....-+.+.++.+.+.|+ +|+|
T Consensus       152 Ii~D~~~p~~~------~~~L~t~eFy~~~~~~L~~~Gv~  185 (274)
T d1iy9a_         152 IMVDSTEPVGP------AVNLFTKGFYAGIAKALKEDGIF  185 (274)
T ss_dssp             EEESCSSCCSC------CCCCSTTHHHHHHHHHEEEEEEE
T ss_pred             EEEcCCCCCCc------chhhccHHHHHHHHhhcCCCceE
Confidence            99999865420      111114455555555555 5544

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.00  E-value=7.8e-06  Score=73.81  Aligned_cols=78  Identities=14%  Similarity=0.035  Sum_probs=55.8

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCC------------CEEEEEeCChHHHHHHHHHhhc----CCCeEEEEcCCCCc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPN------------GVVYAVEFSHRSGRDLVNMAKK----RTNVIPIIEDARHP  204 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~------------g~V~avD~s~~~~~~l~~~a~~----~~nV~~i~~D~~~~  204 (264)
                      ++++.+|||-+||+|.+.+.+.+.+...            ..++++|+++.+.+-+......    ..+..+.+.|..+.
T Consensus       160 ~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~~  239 (425)
T d2okca1         160 PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEK  239 (425)
T ss_dssp             CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTS
T ss_pred             CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhhh
Confidence            7788999999999999999998876422            2499999997664222111111    12466778887654


Q ss_pred             hhhcccCCCccEEEEcCC
Q 024665          205 AKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       205 ~~~~~~~~~fD~V~~d~p  222 (264)
                      .    ...+||+|++|||
T Consensus       240 ~----~~~~fD~Ii~NPP  253 (425)
T d2okca1         240 E----PSTLVDVILANPP  253 (425)
T ss_dssp             C----CSSCEEEEEECCC
T ss_pred             h----cccccceEEecCC
Confidence            3    2468999999999

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.95  E-value=2.4e-05  Score=68.14  Aligned_cols=78  Identities=12%  Similarity=-0.003  Sum_probs=57.9

Q ss_pred             hHHHHHHHhccc--cc-CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCC
Q 024665          126 SKLAAAVLGGVD--NI-WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDAR  202 (264)
Q Consensus       126 s~l~~~il~~l~--~~-~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~  202 (264)
                      ..++..|+..++  .. .-.+++.|||+|+|+|.+|..|.+...+ .+|+++|+++++.+.+.+... ..|++++++|+.
T Consensus        23 ~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~-~~v~~iE~D~~~~~~L~~~~~-~~~~~ii~~D~l  100 (322)
T d1i4wa_          23 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCP-RQYSLLEKRSSLYKFLNAKFE-GSPLQILKRDPY  100 (322)
T ss_dssp             HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCC-SEEEEECCCHHHHHHHHHHTT-TSSCEEECSCTT
T ss_pred             HHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHhcc-CCCcEEEeCchh
Confidence            346666665443  11 1125778999999999999999987543 489999999998877766543 458999999998


Q ss_pred             Cch
Q 024665          203 HPA  205 (264)
Q Consensus       203 ~~~  205 (264)
                      ...
T Consensus       101 ~~~  103 (322)
T d1i4wa_         101 DWS  103 (322)
T ss_dssp             CHH
T ss_pred             hcc
Confidence            764

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.90  E-value=1.4e-05  Score=69.33  Aligned_cols=104  Identities=17%  Similarity=0.111  Sum_probs=67.5

Q ss_pred             CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh------cCCCeEEEEcCCCCchhhcccCCCccEE
Q 024665          144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK------KRTNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~------~~~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      -.+||-+|-|.|.++..++.. .+..+|+.||+++.+++-..+.-.      ..++++++++|++++..  ....+||+|
T Consensus       107 pk~VLIiGgG~G~~~rellk~-~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~--~~~~~yDvI  183 (312)
T d2b2ca1         107 PKRVLIIGGGDGGILREVLKH-ESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLK--NHKNEFDVI  183 (312)
T ss_dssp             CCEEEEESCTTSHHHHHHTTC-TTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHH--HCTTCEEEE
T ss_pred             CCeEEEeCCCchHHHHHHHHc-CCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHH--hCCCCCCEE
Confidence            368999999999999999875 244689999999988655544322      23589999999988764  245689999


Q ss_pred             EEcCCCchHHHHHHHHHhCCCcHHHHHHHHHHhh-cchhh
Q 024665          218 FSDVAQPDQVCFLCLILFQPIVINNLQSVNNETK-GGIFE  256 (264)
Q Consensus       218 ~~d~p~~~~~~~~~~~~l~~~~~~~l~~~~~~Lk-~g~f~  256 (264)
                      ++|.+.|...      +...-+.+.+..+.+.|+ +|+|.
T Consensus       184 I~D~~dp~~~------~~~L~t~eFy~~~~~~L~~~Gi~v  217 (312)
T d2b2ca1         184 ITDSSDPVGP------AESLFGQSYYELLRDALKEDGILS  217 (312)
T ss_dssp             EECCC-------------------HHHHHHHHEEEEEEEE
T ss_pred             EEcCCCCCCc------chhhhhHHHHHHHHhhcCCCcEEE
Confidence            9999865321      111114444555555555 55443

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.84  E-value=5.3e-05  Score=65.02  Aligned_cols=79  Identities=18%  Similarity=0.171  Sum_probs=59.8

Q ss_pred             CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHh------hcCCCeEEEEcCCCCchhhcccCCCccEE
Q 024665          144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA------KKRTNVIPIIEDARHPAKYRMLVGMVDVI  217 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a------~~~~nV~~i~~D~~~~~~~~~~~~~fD~V  217 (264)
                      -++||=+|-|.|.++..+++. .+..+|+.||+++.+++-..+.-      ...++++++.+|+.+.... ...++||+|
T Consensus        81 pk~VLiiGgG~G~~~r~~l~~-~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~-~~~~~yDvI  158 (290)
T d1xj5a_          81 PKKVLVIGGGDGGVLREVARH-ASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKN-AAEGSYDAV  158 (290)
T ss_dssp             CCEEEEETCSSSHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHT-SCTTCEEEE
T ss_pred             CcceEEecCCchHHHHHHHhc-ccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhh-ccccCccEE
Confidence            368999999999999999876 24468999999987764444321      2346899999999876532 123589999


Q ss_pred             EEcCCCc
Q 024665          218 FSDVAQP  224 (264)
Q Consensus       218 ~~d~p~~  224 (264)
                      ++|.+.|
T Consensus       159 i~D~~dp  165 (290)
T d1xj5a_         159 IVDSSDP  165 (290)
T ss_dssp             EECCCCT
T ss_pred             EEcCCCC
Confidence            9999865

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.78  E-value=4.9e-05  Score=67.56  Aligned_cols=90  Identities=13%  Similarity=-0.050  Sum_probs=61.8

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHH---HHhhcC--------------CCeEEEEcCCCCch
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLV---NMAKKR--------------TNVIPIIEDARHPA  205 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~---~~a~~~--------------~nV~~i~~D~~~~~  205 (264)
                      .+.+|||+.|+||..++..|...+ ..+|+++|+|+.+++.+.   +.|...              .++.+.+.|+....
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~-~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~  123 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM  123 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhh
Confidence            456899999999999999887764 568999999987754433   333211              14677788876543


Q ss_pred             hhcccCCCccEEEEcCC-CchHHHHHHHHHh
Q 024665          206 KYRMLVGMVDVIFSDVA-QPDQVCFLCLILF  235 (264)
Q Consensus       206 ~~~~~~~~fD~V~~d~p-~~~~~~~~~~~~l  235 (264)
                      .  .....||+|.+||- .|......++.++
T Consensus       124 ~--~~~~~fDvIDiDPfGs~~pfldsAi~a~  152 (375)
T d2dula1         124 A--ERHRYFHFIDLDPFGSPMEFLDTALRSA  152 (375)
T ss_dssp             H--HSTTCEEEEEECCSSCCHHHHHHHHHHE
T ss_pred             H--hhcCcCCcccCCCCCCcHHHHHHHHHHh
Confidence            2  12357999999987 4445444455444

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.74  E-value=8.5e-05  Score=61.94  Aligned_cols=85  Identities=13%  Similarity=0.038  Sum_probs=60.1

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh--cCCCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK--KRTNVIPIIEDARHPAKYRMLVGMVDVIFS  219 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~--~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~  219 (264)
                      .+..+|+|+|+|.|.-++.+|-. .|..+|+-+|.+..-+..+.....  ...|+++++..+.+........+.||+|++
T Consensus        69 ~~~~~ilDiGSGaGfPGi~laI~-~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~s  147 (239)
T d1xdza_          69 NQVNTICDVGAGAGFPSLPIKIC-FPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA  147 (239)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHH-CTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred             cCCCeEEeecCCCchHHHHHHHh-CCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEE
Confidence            46779999999999999999965 478899999999533323222222  234899999888765432223468999999


Q ss_pred             cCCCchHH
Q 024665          220 DVAQPDQV  227 (264)
Q Consensus       220 d~p~~~~~  227 (264)
                      -+-.+-..
T Consensus       148 RAva~l~~  155 (239)
T d1xdza_         148 RAVARLSV  155 (239)
T ss_dssp             ECCSCHHH
T ss_pred             hhhhCHHH
Confidence            87754433

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.73  E-value=5.9e-06  Score=69.32  Aligned_cols=93  Identities=15%  Similarity=0.082  Sum_probs=55.0

Q ss_pred             chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCC-eEEEEcCCCC
Q 024665          125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTN-VIPIIEDARH  203 (264)
Q Consensus       125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~n-V~~i~~D~~~  203 (264)
                      .|.-+.++....+...++|..+|+|||||+|.|+..++.+. +...|.|+++-....++-+.......| +.+...+.. 
T Consensus        48 ~SR~~~Kl~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~-~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv-  125 (257)
T d2p41a1          48 VSRGSAKLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLK-NVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDV-  125 (257)
T ss_dssp             SSTHHHHHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTST-TEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCT-
T ss_pred             cchHHHHHHHHHHhcCccCCCeEEEecCCCChHHHHHHhhc-CCCceeEEEecCccccCCccccccccccccchhhhhH-
Confidence            44445555555556678999999999999999999999773 234688888842100000000000013 233333321 


Q ss_pred             chhhcccCCCccEEEEcCC
Q 024665          204 PAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       204 ~~~~~~~~~~fD~V~~d~p  222 (264)
                         +......+|+|+||+.
T Consensus       126 ---~~l~~~~~D~vlcDm~  141 (257)
T d2p41a1         126 ---FFIPPERCDTLLCDIG  141 (257)
T ss_dssp             ---TTSCCCCCSEEEECCC
T ss_pred             ---HhcCCCcCCEEEeeCC
Confidence               1123468999999986

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=97.68  E-value=6.4e-05  Score=62.43  Aligned_cols=80  Identities=19%  Similarity=0.260  Sum_probs=57.3

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHh---CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCC-CccE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIV---GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVG-MVDV  216 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~---~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~-~fD~  216 (264)
                      ++| .+|||+|+..|..++.+|+.+   .+.++|+++|+++...   ........+|+++++|..+......+.+ .+|.
T Consensus        79 ~KP-k~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~---~~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dl  154 (232)
T d2bm8a1          79 LRP-RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRC---QIPASDMENITLHQGDCSDLTTFEHLREMAHPL  154 (232)
T ss_dssp             HCC-SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTC---CCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSE
T ss_pred             hCC-CEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhh---hhhhccccceeeeecccccHHHHHHHHhcCCCE
Confidence            445 489999999999888887655   5678999999985321   1112234589999999987654433333 6899


Q ss_pred             EEEcCCCc
Q 024665          217 IFSDVAQP  224 (264)
Q Consensus       217 V~~d~p~~  224 (264)
                      |+.|....
T Consensus       155 IfID~~H~  162 (232)
T d2bm8a1         155 IFIDNAHA  162 (232)
T ss_dssp             EEEESSCS
T ss_pred             EEEcCCcc
Confidence            99997743

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.64  E-value=0.00015  Score=60.42  Aligned_cols=70  Identities=10%  Similarity=0.091  Sum_probs=54.3

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD  220 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d  220 (264)
                      ...-.+|||||||+|.+++.+++.. |..+++.+|+.+     .++.+....+|+++.+|+.+..      ...|+|++-
T Consensus        79 f~~~~~vlDiGGG~G~~~~~l~~~~-P~l~~~v~Dlp~-----vi~~~~~~~ri~~~~gd~~~~~------p~~D~~~l~  146 (244)
T d1fp1d2          79 FEGISTLVDVGGGSGRNLELIISKY-PLIKGINFDLPQ-----VIENAPPLSGIEHVGGDMFASV------PQGDAMILK  146 (244)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEECHH-----HHTTCCCCTTEEEEECCTTTCC------CCEEEEEEE
T ss_pred             ccCCcEEEEecCCCcHHHHHHHHHC-CCCeEEEecchh-----hhhccCCCCCeEEecCCccccc------ccceEEEEe
Confidence            4556899999999999999999985 788999999853     2344445569999999987643      356988865


Q ss_pred             CC
Q 024665          221 VA  222 (264)
Q Consensus       221 ~p  222 (264)
                      -.
T Consensus       147 ~v  148 (244)
T d1fp1d2         147 AV  148 (244)
T ss_dssp             SS
T ss_pred             hh
Confidence            44

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.49  E-value=0.00019  Score=59.86  Aligned_cols=69  Identities=13%  Similarity=0.146  Sum_probs=54.1

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcC
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDV  221 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~  221 (264)
                      ..-.+|||+|||+|.++..+++.. |..+++..|+.+     .++.+....+|+++.+|+.+..      ..+|++++.-
T Consensus        79 ~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp~-----vi~~~~~~~rv~~~~gD~f~~~------p~aD~~~l~~  146 (244)
T d1fp2a2          79 DGLESIVDVGGGTGTTAKIICETF-PKLKCIVFDRPQ-----VVENLSGSNNLTYVGGDMFTSI------PNADAVLLKY  146 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEECHH-----HHTTCCCBTTEEEEECCTTTCC------CCCSEEEEES
T ss_pred             cCceEEEEecCCccHHHHHHHHhC-CCCeEEEecCHH-----HHHhCcccCceEEEecCcccCC------CCCcEEEEEe
Confidence            345689999999999999999985 678999999853     2445555679999999987643      3679998744


Q ss_pred             C
Q 024665          222 A  222 (264)
Q Consensus       222 p  222 (264)
                      .
T Consensus       147 v  147 (244)
T d1fp2a2         147 I  147 (244)
T ss_dssp             C
T ss_pred             e
Confidence            4

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=0.00013  Score=67.37  Aligned_cols=79  Identities=9%  Similarity=-0.021  Sum_probs=51.7

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCCC-----------------CEEEEEeCChHHHHHHHHHhhcCC--------CeE
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGPN-----------------GVVYAVEFSHRSGRDLVNMAKKRT--------NVI  195 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~~-----------------g~V~avD~s~~~~~~l~~~a~~~~--------nV~  195 (264)
                      ++++.+|+|-+||+|.+.+.+.+.+...                 ..+|++|+++.+.+-. .++....        .-.
T Consensus       162 ~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la-~~nl~l~~~~~~i~~~~~  240 (524)
T d2ar0a1         162 PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLA-LMNCLLHDIEGNLDHGGA  240 (524)
T ss_dssp             CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHH-HHHHHTTTCCCBGGGTBS
T ss_pred             CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHH-HHHHHhhcccccccccch
Confidence            7889999999999999999888765321                 2589999998664322 2222111        112


Q ss_pred             EEEcCCCCchhhcccCCCccEEEEcCC
Q 024665          196 PIIEDARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       196 ~i~~D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      ....|......  ....+||+|++|||
T Consensus       241 ~~~~~~l~~d~--~~~~kfD~Ii~NPP  265 (524)
T d2ar0a1         241 IRLGNTLGSDG--ENLPKAHIVATNPP  265 (524)
T ss_dssp             EEESCTTSHHH--HTSCCEEEEEECCC
T ss_pred             hhhhhhhhhcc--cccccceeEEecCC
Confidence            33444433221  12358999999999

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.34  E-value=0.00034  Score=57.98  Aligned_cols=58  Identities=12%  Similarity=0.122  Sum_probs=47.2

Q ss_pred             CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCch
Q 024665          142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPA  205 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~  205 (264)
                      ....+|||||||+|.++..+++.. |..+++.+|+.+.     ++.+....+++++..|..+..
T Consensus        80 ~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp~v-----i~~~~~~~r~~~~~~d~~~~~  137 (243)
T d1kyza2          80 EGLKSLVDVGGGTGAVINTIVSKY-PTIKGINFDLPHV-----IEDAPSYPGVEHVGGDMFVSI  137 (243)
T ss_dssp             SSCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEECTTT-----TTTCCCCTTEEEEECCTTTCC
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHC-CCCeEEEcccHHh-----hhhcccCCceEEecccccccC
Confidence            445789999999999999999985 7889999999753     344555568999999987643

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=97.14  E-value=9.1e-05  Score=62.10  Aligned_cols=101  Identities=10%  Similarity=0.037  Sum_probs=62.4

Q ss_pred             CCcchHHHHHHHhcccc-cCCCCCCEEEEEcccCChHHHHHHHHhCC---------------------------------
Q 024665          122 NPFRSKLAAAVLGGVDN-IWIKPGARVLYLGAASGTTVSHVSDIVGP---------------------------------  167 (264)
Q Consensus       122 ~p~~s~l~~~il~~l~~-~~l~~g~~VLDlG~G~G~~s~~la~~~~~---------------------------------  167 (264)
                      .++...+++.++...-. ........+||-+||||++.+.+|.+...                                 
T Consensus        28 ~~~~~~Laa~il~~al~l~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~  107 (249)
T d1o9ga_          28 PAFPVRLATEIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTAR  107 (249)
T ss_dssp             CCCCHHHHHHHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHH
T ss_pred             CCcchHHHHHHHHHHhhhhcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHH
Confidence            34445566666643221 13455667999999999999988765311                                 


Q ss_pred             ------CCEEEEEeCChHHHHH------HHHHhhcCCCeEEEEcCCCCchhhcc--cCCCccEEEEcCC
Q 024665          168 ------NGVVYAVEFSHRSGRD------LVNMAKKRTNVIPIIEDARHPAKYRM--LVGMVDVIFSDVA  222 (264)
Q Consensus       168 ------~g~V~avD~s~~~~~~------l~~~a~~~~nV~~i~~D~~~~~~~~~--~~~~fD~V~~d~p  222 (264)
                            ...+++.|+++++++.      +++.+....-|++.+.|+.+..+...  .....++|++|||
T Consensus       108 ~~~~~~~~~i~G~D~d~~ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPP  176 (249)
T d1o9ga_         108 ELERREQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLP  176 (249)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECC
T ss_pred             hccccccCCccccccCHHHHHHHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCC
Confidence                  1235566666554322      23333334479999999987553221  2346799999999

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=96.73  E-value=0.0032  Score=52.93  Aligned_cols=70  Identities=13%  Similarity=0.063  Sum_probs=51.0

Q ss_pred             CEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665          145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      .+||||.||.|.+++-+-+. + --.|.++|+++.+.+- .+.|.   .-++++.|++++...  ....+|+++.-+|
T Consensus         1 mk~~~lF~G~Gg~~~gl~~a-G-~~~~~a~e~d~~a~~~-~~~N~---~~~~~~~Di~~~~~~--~~~~~dll~~g~P   70 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKA-G-FRIICANEYDKSIWKT-YESNH---SAKLIKGDISKISSD--EFPKCDGIIGGPP   70 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHH-T-CEEEEEEECCHHHHHH-HHHHC---CSEEEESCTTTSCGG--GSCCCSEEEECCC
T ss_pred             CeEEEeCcCcCHHHHHHHHC-C-CEEEEEEeCCHHHHHH-HHHHC---CCCCccCChhhCCHh--HcccccEEeeccc
Confidence            37999999999999887654 3 2357799999866433 23332   346788999987642  2357999999999

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.72  E-value=0.0019  Score=51.44  Aligned_cols=41  Identities=20%  Similarity=0.222  Sum_probs=28.6

Q ss_pred             CCEEEEEcccCChH----HHHHHHHhCC---CCEEEEEeCChHHHHHH
Q 024665          144 GARVLYLGAASGTT----VSHVSDIVGP---NGVVYAVEFSHRSGRDL  184 (264)
Q Consensus       144 g~~VLDlG~G~G~~----s~~la~~~~~---~g~V~avD~s~~~~~~l  184 (264)
                      .-+||++||+||--    ++.+.+....   .-+|+|+|+|+.+++.+
T Consensus        25 ~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A   72 (193)
T d1af7a2          25 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKA   72 (193)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHH
T ss_pred             CeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHh
Confidence            34899999999984    3334443322   23799999999876544

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.0016  Score=55.37  Aligned_cols=75  Identities=13%  Similarity=0.026  Sum_probs=51.2

Q ss_pred             CEEEEEcccCChHHHHHHHHhCCCC-EEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCCC
Q 024665          145 ARVLYLGAASGTTVSHVSDIVGPNG-VVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ  223 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~~~~g-~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~  223 (264)
                      .+||||+||.|.+++-|... +-.. .|.|+|+++.+.+-. +.|  .++..+++.|+.+..........+|+++..+|+
T Consensus         3 ~kv~~lF~G~Gg~~~gl~~a-G~~~~~~~a~E~~~~a~~~~-~~n--~~~~~~~~~di~~~~~~~~~~~~~Dll~ggpPC   78 (343)
T d1g55a_           3 LRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVY-KYN--FPHTQLLAKTIEGITLEEFDRLSFDMILMSPPC   78 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHH-HHH--CTTSCEECSCGGGCCHHHHHHHCCSEEEECCC-
T ss_pred             CEEEEcCcCccHHHHHHHHc-CCCCeEEEEEECCHHHHHHH-HHH--CCCCCcccCchhhCCHhHcCCCCccEEEeeccc
Confidence            37999999999998877554 3222 478999998764332 222  245678888988765322222379999999994

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=96.52  E-value=0.0091  Score=50.42  Aligned_cols=71  Identities=17%  Similarity=0.155  Sum_probs=50.6

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      .+.+||||+||.|.+++.|.+. + --.|.|+|+++.+.+-. +.|..  +  ..+.|++++...  ....+|+|+..+|
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~a-G-~~~v~a~e~d~~a~~~~-~~N~~--~--~~~~Di~~~~~~--~~~~~Dll~ggpP   80 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESC-G-AECVYSNEWDKYAQEVY-EMNFG--E--KPEGDITQVNEK--TIPDHDILCAGFP   80 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHT-T-CEEEEEECCCHHHHHHH-HHHHS--C--CCBSCGGGSCGG--GSCCCSEEEEECC
T ss_pred             CCCeEEEECccccHHHHHHHHC-C-CeEEEEEeCCHHHHHHH-HHHCC--C--CCcCchhcCchh--hcceeeeeecccc
Confidence            4679999999999999988654 3 23578899998775443 33322  2  236888876542  2357999999999

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.55  E-value=0.021  Score=45.18  Aligned_cols=43  Identities=21%  Similarity=0.350  Sum_probs=33.8

Q ss_pred             cccCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCEEEEEeCChHH
Q 024665          137 DNIWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRS  180 (264)
Q Consensus       137 ~~~~l~~g~~VLDlG~G~-G~~s~~la~~~~~~g~V~avD~s~~~  180 (264)
                      +...++|+++||-+|||+ |..+..+|..++ ..+|+++|.++.-
T Consensus        19 ~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~g-a~~Vi~~d~~~~r   62 (195)
T d1kola2          19 VTAGVGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPAR   62 (195)
T ss_dssp             HHTTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHH
T ss_pred             HHhCCCCCCEEEEECcCHHHHHHHHHHHhhc-ccceeeecccchh
Confidence            334699999999999998 556777777654 5699999999743

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=95.52  E-value=0.0085  Score=49.96  Aligned_cols=48  Identities=17%  Similarity=0.021  Sum_probs=37.5

Q ss_pred             HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHH
Q 024665          127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSG  181 (264)
Q Consensus       127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~  181 (264)
                      .|+..++..    .-.+++.|||..||||++..++..+   .-+.+++|++++..
T Consensus       238 ~L~~rlI~~----~s~~gdiVlDpF~GSGTT~~AA~~l---gR~~Ig~El~~~y~  285 (320)
T d1booa_         238 KLPEFFIRM----LTEPDDLVVDIFGGSNTTGLVAERE---SRKWISFEMKPEYV  285 (320)
T ss_dssp             HHHHHHHHH----HCCTTCEEEETTCTTCHHHHHHHHT---TCEEEEEESCHHHH
T ss_pred             HHHHHhhhh----cccCCCEEEecCCCCcHHHHHHHHc---CCcEEEEeCCHHHH
Confidence            566666633    3579999999999999998887765   34899999998663

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=95.50  E-value=0.017  Score=46.53  Aligned_cols=48  Identities=17%  Similarity=0.125  Sum_probs=36.5

Q ss_pred             HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHH
Q 024665          127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSG  181 (264)
Q Consensus       127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~  181 (264)
                      .|+..++..    .-.+|+.|||..||||+++.++..+   .-+.+++|+++...
T Consensus       200 ~L~~~lI~~----~s~~gd~VlDpF~GSGTT~~aa~~~---~R~~ig~El~~~y~  247 (256)
T d1g60a_         200 DLIERIIRA----SSNPNDLVLDCFMGSGTTAIVAKKL---GRNFIGCDMNAEYV  247 (256)
T ss_dssp             HHHHHHHHH----HCCTTCEEEESSCTTCHHHHHHHHT---TCEEEEEESCHHHH
T ss_pred             hHHHHHHHH----hCCCCCEEEECCCCchHHHHHHHHc---CCeEEEEeCCHHHH
Confidence            455555533    3478999999999999999877765   34899999998553

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.17  E-value=0.019  Score=46.88  Aligned_cols=49  Identities=18%  Similarity=0.166  Sum_probs=37.6

Q ss_pred             hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHH
Q 024665          126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSG  181 (264)
Q Consensus       126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~  181 (264)
                      ..|+..++..    .-.+++.|||..||||++++++..+ +  -+.+++|+++...
T Consensus       194 ~~L~~~~I~~----~s~~gdiVLDpF~GSGTT~~Aa~~l-g--R~~ig~El~~~y~  242 (279)
T d1eg2a_         194 AAVIERLVRA----LSHPGSTVLDFFAGSGVTARVAIQE-G--RNSICTDAAPVFK  242 (279)
T ss_dssp             HHHHHHHHHH----HSCTTCEEEETTCTTCHHHHHHHHH-T--CEEEEEESSTHHH
T ss_pred             hhHHHHHHHh----hcCCCCEEEecCCCCcHHHHHHHHh-C--CeEEEEeCCHHHH
Confidence            3455555533    3479999999999999998888776 3  3899999997653

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.95  E-value=0.043  Score=40.12  Aligned_cols=74  Identities=7%  Similarity=0.109  Sum_probs=51.0

Q ss_pred             EEEEEcccCChHHHHHHHHhCCC-CEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-CCCccEEEEcCCC
Q 024665          146 RVLYLGAASGTTVSHVSDIVGPN-GVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-VGMVDVIFSDVAQ  223 (264)
Q Consensus       146 ~VLDlG~G~G~~s~~la~~~~~~-g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-~~~fD~V~~d~p~  223 (264)
                      +|+=+|  .|.++..+++.+... -.|+.+|.+++.++++.+    ..++.++++|+.+....... ...+|.+++-.+.
T Consensus         2 ~IvI~G--~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~----~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~   75 (132)
T d1lssa_           2 YIIIAG--IGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASA----EIDALVINGDCTKIKTLEDAGIEDADMYIAVTGK   75 (132)
T ss_dssp             EEEEEC--CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----HCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSC
T ss_pred             EEEEEC--CCHHHHHHHHHHHHCCCCcceecCChhhhhhhhh----hhhhhhccCcccchhhhhhcChhhhhhhcccCCc
Confidence            455544  589999999776534 479999999866544322    23678999999997654322 3579999886665


Q ss_pred             ch
Q 024665          224 PD  225 (264)
Q Consensus       224 ~~  225 (264)
                      .+
T Consensus        76 d~   77 (132)
T d1lssa_          76 EE   77 (132)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=94.94  E-value=0.13  Score=38.76  Aligned_cols=98  Identities=15%  Similarity=0.196  Sum_probs=55.7

Q ss_pred             hcccccCCCCCCEEEEEccc-CChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC-CeEEEEcCCC-Cchhh---
Q 024665          134 GGVDNIWIKPGARVLYLGAA-SGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT-NVIPIIEDAR-HPAKY---  207 (264)
Q Consensus       134 ~~l~~~~l~~g~~VLDlG~G-~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~-nV~~i~~D~~-~~~~~---  207 (264)
                      +.+....++++++||-+||| .|.+++.++...+  .+|+++|.++.-    .+.+++.. ...++..+.. +....   
T Consensus        17 ~a~~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G--a~vi~v~~~~~r----~~~a~~~ga~~~~~~~~~~~~~~~~~~~   90 (170)
T d1e3ja2          17 HACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSPRR----LEVAKNCGADVTLVVDPAKEEESSIIER   90 (170)
T ss_dssp             HHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHH----HHHHHHTTCSEEEECCTTTSCHHHHHHH
T ss_pred             HHHHHhCCCCCCEEEEEcccccchhhHhhHhhhc--ccccccchHHHH----HHHHHHcCCcEEEeccccccccchhhhh
Confidence            33445569999999999988 4567777777754  589999999743    34443322 2222222211 11110   


Q ss_pred             --cccCCCccEEEEcCCCchHHHHHHHHHhCCC
Q 024665          208 --RMLVGMVDVIFSDVAQPDQVCFLCLILFQPI  238 (264)
Q Consensus       208 --~~~~~~fD~V~~d~p~~~~~~~~~~~~l~~~  238 (264)
                        ......+|+|+-....+ ......++.+.+.
T Consensus        91 ~~~~~g~g~D~vid~~g~~-~~~~~a~~~~~~~  122 (170)
T d1e3ja2          91 IRSAIGDLPNVTIDCSGNE-KCITIGINITRTG  122 (170)
T ss_dssp             HHHHSSSCCSEEEECSCCH-HHHHHHHHHSCTT
T ss_pred             hhcccccCCceeeecCCCh-HHHHHHHHHHhcC
Confidence              01124689887544433 3445555666555

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.44  E-value=0.038  Score=42.17  Aligned_cols=41  Identities=24%  Similarity=0.346  Sum_probs=32.8

Q ss_pred             ccCCCCCCEEEEEccc-CChHHHHHHHHhCCCCEEEEEeCChHH
Q 024665          138 NIWIKPGARVLYLGAA-SGTTVSHVSDIVGPNGVVYAVEFSHRS  180 (264)
Q Consensus       138 ~~~l~~g~~VLDlG~G-~G~~s~~la~~~~~~g~V~avD~s~~~  180 (264)
                      ...++|+++||-+||| .|.++..+|..++  .+|+++|.+++-
T Consensus        22 ~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G--~~vi~~~~~~~k   63 (168)
T d1piwa2          22 RNGCGPGKKVGIVGLGGIGSMGTLISKAMG--AETYVISRSSRK   63 (168)
T ss_dssp             HTTCSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSSTT
T ss_pred             HhCcCCCCEEEEECCCCcchhHHHHhhhcc--ccccccccchhH
Confidence            4469999999999997 5667777887765  589999999643

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=94.08  E-value=0.037  Score=42.73  Aligned_cols=43  Identities=19%  Similarity=0.205  Sum_probs=34.2

Q ss_pred             ccccCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCEEEEEeCChH
Q 024665          136 VDNIWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHR  179 (264)
Q Consensus       136 l~~~~l~~g~~VLDlG~G~-G~~s~~la~~~~~~g~V~avD~s~~  179 (264)
                      ++...++|+++||=+|||+ |.+++.+|+.++ ..+|+++|.++.
T Consensus        20 ~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~G-a~~Vi~~d~~~~   63 (174)
T d1jqba2          20 AELADIEMGSSVVVIGIGAVGLMGIAGAKLRG-AGRIIGVGSRPI   63 (174)
T ss_dssp             HHHTTCCTTCCEEEECCSHHHHHHHHHHHTTT-CSCEEEECCCHH
T ss_pred             HHHhCCCCCCEEEEEcCCcchhhhhhhhhccc-ccccccccchhh
Confidence            3445699999999999987 778888888764 347999999964

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.62  E-value=0.34  Score=36.44  Aligned_cols=99  Identities=14%  Similarity=0.063  Sum_probs=55.8

Q ss_pred             hcccccCCCCCCEEEEEcccCCh-HHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhh-----
Q 024665          134 GGVDNIWIKPGARVLYLGAASGT-TVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY-----  207 (264)
Q Consensus       134 ~~l~~~~l~~g~~VLDlG~G~G~-~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~-----  207 (264)
                      +.++...++|+++||=+|||+-. ++..++...+ ..+|+++|.++.-    ++.+++..--+++.-+-.++...     
T Consensus        17 ~a~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G-~~~Vi~~d~~~~r----l~~a~~~Ga~~~~~~~~~~~~~~~~~~~   91 (171)
T d1pl8a2          17 HACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTDLSATR----LSKAKEIGADLVLQISKESPQEIARKVE   91 (171)
T ss_dssp             HHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHH----HHHHHHTTCSEEEECSSCCHHHHHHHHH
T ss_pred             HHHHHhCCCCCCEEEEECCCccHHHHHHHHHHcC-CceEEeccCCHHH----HHHHHHhCCccccccccccccccccccc
Confidence            34445579999999999997644 4555565544 4589999999743    33444332122333333332211     


Q ss_pred             cccCCCccEEEEcCCCchHHHHHHHHHhCCC
Q 024665          208 RMLVGMVDVIFSDVAQPDQVCFLCLILFQPI  238 (264)
Q Consensus       208 ~~~~~~fD~V~~d~p~~~~~~~~~~~~l~~~  238 (264)
                      ......+|+|+--...+ ......++.+.+.
T Consensus        92 ~~~g~g~Dvvid~~G~~-~~~~~a~~~~~~g  121 (171)
T d1pl8a2          92 GQLGCKPEVTIECTGAE-ASIQAGIYATRSG  121 (171)
T ss_dssp             HHHTSCCSEEEECSCCH-HHHHHHHHHSCTT
T ss_pred             ccCCCCceEEEeccCCc-hhHHHHHHHhcCC
Confidence            01124689987655433 3445555655554

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=93.61  E-value=0.28  Score=37.40  Aligned_cols=40  Identities=20%  Similarity=0.137  Sum_probs=32.3

Q ss_pred             CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCEEEEEeCChHH
Q 024665          140 WIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRS  180 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~-G~~s~~la~~~~~~g~V~avD~s~~~  180 (264)
                      .+++|++||-+|||+ |.+++.+|..++. .+|+++|.++.-
T Consensus        25 ~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga-~~Vi~~~~~~~~   65 (182)
T d1vj0a2          25 ESFAGKTVVIQGAGPLGLFGVVIARSLGA-ENVIVIAGSPNR   65 (182)
T ss_dssp             SCCBTCEEEEECCSHHHHHHHHHHHHTTB-SEEEEEESCHHH
T ss_pred             CCCCCCEEEEECCCccchhheeccccccc-cccccccccccc
Confidence            589999999999874 6678888887653 489999999754

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.57  E-value=0.06  Score=41.92  Aligned_cols=80  Identities=14%  Similarity=0.124  Sum_probs=54.2

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      .+.+||=.|+..|.=......+.....+|+.++.+++.++++.+......++.++..|..+........+.+|+|+.+..
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iDilin~Ag  101 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFTAGA  101 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEECCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcCeeeecCc
Confidence            67899999988776322222233335699999999766555555544444666777888776554445678999998865

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=93.28  E-value=0.18  Score=43.33  Aligned_cols=43  Identities=16%  Similarity=0.158  Sum_probs=32.2

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhC------CCCEEEEEeCChHHHHH
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVG------PNGVVYAVEFSHRSGRD  183 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~------~~g~V~avD~s~~~~~~  183 (264)
                      ..+.-.|||+|+|+|+++..++..+.      ....++-||.|+.+.+.
T Consensus        77 ~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~  125 (365)
T d1zkda1          77 EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQK  125 (365)
T ss_dssp             CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHH
T ss_pred             CCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHH
Confidence            33445799999999999988877654      23468999999866433

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=93.09  E-value=0.18  Score=38.69  Aligned_cols=93  Identities=15%  Similarity=0.133  Sum_probs=56.0

Q ss_pred             cCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCC-chh-h--cccCCC
Q 024665          139 IWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARH-PAK-Y--RMLVGM  213 (264)
Q Consensus       139 ~~l~~g~~VLDlG~G~-G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~-~~~-~--~~~~~~  213 (264)
                      ..++|+++||=+|||+ |.+++.++..++ ...|+++|.+++-    .+.+++..-.+++...-.+ ... .  ......
T Consensus        24 a~v~~G~~VlV~G~G~iGl~a~~~ak~~G-a~~Vi~~d~~~~r----~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G   98 (174)
T d1e3ia2          24 AKVTPGSTCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDINGEK----FPKAKALGATDCLNPRELDKPVQDVITELTAGG   98 (174)
T ss_dssp             SCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGG----HHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSC
T ss_pred             hCCCCCCEEEEECCChHHHHHHHHHHHhC-CceeeeeccchHH----HHHHHHhCCCcccCCccchhhhhhhHhhhhcCC
Confidence            3589999999999998 788888888875 5689999999632    3444443222333322111 110 0  011246


Q ss_pred             ccEEEEcCCCchHHHHHHHHHhCC
Q 024665          214 VDVIFSDVAQPDQVCFLCLILFQP  237 (264)
Q Consensus       214 fD~V~~d~p~~~~~~~~~~~~l~~  237 (264)
                      +|+||-....+ ......++.+.+
T Consensus        99 ~d~vie~~G~~-~~~~~a~~~~~~  121 (174)
T d1e3ia2          99 VDYSLDCAGTA-QTLKAAVDCTVL  121 (174)
T ss_dssp             BSEEEESSCCH-HHHHHHHHTBCT
T ss_pred             CcEEEEecccc-hHHHHHHHHhhc
Confidence            89997554443 344555555554

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.07  E-value=0.83  Score=36.66  Aligned_cols=79  Identities=14%  Similarity=0.161  Sum_probs=54.3

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcC-CCeEEEEcCCCCchhhc-------ccCCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYR-------MLVGM  213 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~-~nV~~i~~D~~~~~~~~-------~~~~~  213 (264)
                      ++..+|=.|+++| +...+|..+- ...+|+.+|.+++.++++.+..... .++.+++.|+++.....       ...+.
T Consensus         9 enKvalITGas~G-IG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~   87 (251)
T d2c07a1           9 ENKVALVTGAGRG-IGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKN   87 (251)
T ss_dssp             SSCEEEEESTTSH-HHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            5677887787665 6666665553 3458999999977666655554433 47999999999865321       11358


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      +|+++.+..
T Consensus        88 iDilvnnag   96 (251)
T d2c07a1          88 VDILVNNAG   96 (251)
T ss_dssp             CCEEEECCC
T ss_pred             ceeeeeccc
Confidence            999998876

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=92.53  E-value=0.44  Score=38.71  Aligned_cols=79  Identities=15%  Similarity=0.223  Sum_probs=54.0

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc-------cCCCc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMV  214 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~-------~~~~f  214 (264)
                      .+.+||=.|+++|. ...+|+.+ ....+|+.+|.+++.++++.+......++.+++.|+++......       ..+.+
T Consensus         5 ~gKvalITGas~GI-G~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   83 (268)
T d2bgka1           5 QDKVAIITGGAGGI-GETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKL   83 (268)
T ss_dssp             TTCEEEEESTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHcCCc
Confidence            57788989988775 34343332 23468999999987766666655445578899999998653211       12578


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+++.+..
T Consensus        84 D~lVnnAG   91 (268)
T d2bgka1          84 DIMFGNVG   91 (268)
T ss_dssp             CEEEECCC
T ss_pred             ceeccccc
Confidence            99998764

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=92.50  E-value=0.26  Score=36.45  Aligned_cols=73  Identities=7%  Similarity=-0.043  Sum_probs=49.8

Q ss_pred             ccCChHHHHHHHHhCC-CCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhc-ccCCCccEEEEcCCCch
Q 024665          152 AASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR-MLVGMVDVIFSDVAQPD  225 (264)
Q Consensus       152 ~G~G~~s~~la~~~~~-~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~-~~~~~fD~V~~d~p~~~  225 (264)
                      ||.|.++..+++.+.. .-.|+.||.+++.....++... ..++.++.+|++++..+. .....+|.|++-.+...
T Consensus         9 ~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~-~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d~   83 (153)
T d1id1a_           9 CGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL-GDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDA   83 (153)
T ss_dssp             ECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH-CTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHH
T ss_pred             ECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhh-cCCcEEEEccCcchHHHHHhccccCCEEEEccccHH
Confidence            5668888888876533 3469999999755434344332 347999999999976432 22457999998777543

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.31  E-value=0.58  Score=37.76  Aligned_cols=80  Identities=16%  Similarity=0.124  Sum_probs=52.4

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCCCchhhc-------ccCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYR-------MLVG  212 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~~~~~~~-------~~~~  212 (264)
                      ++..||=.|+++|.=...+..+.....+|+.++.++..++++.+.....   .++.+++.|+.+.....       ...+
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~g   88 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS   88 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            4678999998877632222223334568999999976665655544332   37899999999865221       1125


Q ss_pred             CccEEEEcCC
Q 024665          213 MVDVIFSDVA  222 (264)
Q Consensus       213 ~fD~V~~d~p  222 (264)
                      .+|+++.+..
T Consensus        89 ~iD~lVnnAg   98 (257)
T d1xg5a_          89 GVDICINNAG   98 (257)
T ss_dssp             CCSEEEECCC
T ss_pred             CCCEEEeccc
Confidence            7899998866

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=91.80  E-value=0.61  Score=37.50  Aligned_cols=79  Identities=10%  Similarity=0.122  Sum_probs=52.4

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhc-------ccCCCc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR-------MLVGMV  214 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~-------~~~~~f  214 (264)
                      .|.++|=-|+++|. ...+|..+ ....+|+.+|.+++.++++.+......++.+++.|+++.....       ...+.+
T Consensus         5 ~gK~alVTGas~GI-G~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i   83 (251)
T d1zk4a1           5 DGKVAIITGGTLGI-GLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPV   83 (251)
T ss_dssp             TTCEEEETTTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHhCCc
Confidence            46778877876664 33333332 2356899999998776666655544458999999999865321       112578


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+++.+..
T Consensus        84 DiLVnnAg   91 (251)
T d1zk4a1          84 STLVNNAG   91 (251)
T ss_dssp             CEEEECCC
T ss_pred             eEEEeccc
Confidence            99998765

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=91.79  E-value=0.19  Score=36.27  Aligned_cols=71  Identities=11%  Similarity=0.090  Sum_probs=48.2

Q ss_pred             ccCChHHHHHHHHhCC-CCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-CCCccEEEEcCCCchHH
Q 024665          152 AASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-VGMVDVIFSDVAQPDQV  227 (264)
Q Consensus       152 ~G~G~~s~~la~~~~~-~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-~~~fD~V~~d~p~~~~~  227 (264)
                      ||-|.++..+++.+.. .-.|+.+|.+++.+++    +.. ....++.+|++++...... ...+|.|++-.+..+..
T Consensus         6 iG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~----~~~-~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~~   78 (134)
T d2hmva1           6 IGLGRFGGSIVKELHRMGHEVLAVDINEEKVNA----YAS-YATHAVIANATEENELLSLGIRNFEYVIVAIGANIQA   78 (134)
T ss_dssp             ECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHH----TTT-TCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHHH
T ss_pred             ECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHH----HHH-hCCcceeeecccchhhhccCCccccEEEEEcCchHHh
Confidence            4778999998877642 3479999999865433    322 2456788999987643222 35789999888755443

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=91.73  E-value=0.29  Score=42.64  Aligned_cols=47  Identities=15%  Similarity=0.210  Sum_probs=37.7

Q ss_pred             CCCCCEEEEEcccCChHHHHHHHHhCC-CCEEEEEeCChHHHHHHHHH
Q 024665          141 IKPGARVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNM  187 (264)
Q Consensus       141 l~~g~~VLDlG~G~G~~s~~la~~~~~-~g~V~avD~s~~~~~~l~~~  187 (264)
                      +++++.++|+||-.|.++..++..... ..+|+|+|-++...+.+.+.
T Consensus       210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkN  257 (395)
T d2py6a1         210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNV  257 (395)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHH
T ss_pred             cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHH
Confidence            677889999999999999988877643 36899999998775555443

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.67  E-value=0.95  Score=36.26  Aligned_cols=77  Identities=16%  Similarity=0.242  Sum_probs=54.3

Q ss_pred             CCCEEEEEcccCCh---HHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhc-------ccC
Q 024665          143 PGARVLYLGAASGT---TVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYR-------MLV  211 (264)
Q Consensus       143 ~g~~VLDlG~G~G~---~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~-------~~~  211 (264)
                      .|..||=-|+++|.   ++..+++.   ..+|+.+|.+++-++++.+.... ..++.++..|+++.....       ...
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~---G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~   82 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKL---KSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEI   82 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            47788888998887   44445443   56899999997665555554433 348999999999975321       123


Q ss_pred             CCccEEEEcCC
Q 024665          212 GMVDVIFSDVA  222 (264)
Q Consensus       212 ~~fD~V~~d~p  222 (264)
                      +..|+++.+..
T Consensus        83 g~idilinnag   93 (244)
T d1yb1a_          83 GDVSILVNNAG   93 (244)
T ss_dssp             CCCSEEEECCC
T ss_pred             CCCceeEeecc
Confidence            57999998876

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=90.61  E-value=0.22  Score=40.85  Aligned_cols=76  Identities=16%  Similarity=0.174  Sum_probs=50.0

Q ss_pred             EEEEEcccCChHHHHHHHHh-CCCCEEEEEe-CChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccC--CCccEEEEcC
Q 024665          146 RVLYLGAASGTTVSHVSDIV-GPNGVVYAVE-FSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLV--GMVDVIFSDV  221 (264)
Q Consensus       146 ~VLDlG~G~G~~s~~la~~~-~~~g~V~avD-~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~--~~fD~V~~d~  221 (264)
                      +|| |-=|+|.+..++.+.+ ...-+|+++| ++.....+.+.......+++++.+|+++........  .++|+|+.-+
T Consensus         2 KIL-VTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih~a   80 (338)
T d1orra_           2 KLL-ITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLA   80 (338)
T ss_dssp             EEE-EETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             EEE-EECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCceEEeec
Confidence            677 4456799999987755 3446899998 443222234444445569999999999865432222  2579998655


Q ss_pred             C
Q 024665          222 A  222 (264)
Q Consensus       222 p  222 (264)
                      .
T Consensus        81 a   81 (338)
T d1orra_          81 G   81 (338)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=90.43  E-value=0.35  Score=36.27  Aligned_cols=80  Identities=20%  Similarity=0.209  Sum_probs=45.7

Q ss_pred             cccccCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCC
Q 024665          135 GVDNIWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGM  213 (264)
Q Consensus       135 ~l~~~~l~~g~~VLDlG~G~-G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~  213 (264)
                      .+....++|+++||=+|||+ |.+++.+|..++  .+++++|.++.-. +   .++....-+++.  ..+..........
T Consensus        22 al~~~~~~~G~~VlI~GaG~vG~~a~qlak~~G--a~~i~~~~~~~~~-~---~a~~lGad~~i~--~~~~~~~~~~~~~   93 (168)
T d1uufa2          22 PLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMG--AHVVAFTTSEAKR-E---AAKALGADEVVN--SRNADEMAAHLKS   93 (168)
T ss_dssp             HHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSGGGH-H---HHHHHTCSEEEE--TTCHHHHHTTTTC
T ss_pred             HHHHhCCCCCCEEEEeccchHHHHHHHHhhccc--ccchhhccchhHH-H---HHhccCCcEEEE--CchhhHHHHhcCC
Confidence            33445699999999999864 456667777653  4788899885322 2   222211123333  2222222123357


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      +|+|+-...
T Consensus        94 ~D~vid~~g  102 (168)
T d1uufa2          94 FDFILNTVA  102 (168)
T ss_dssp             EEEEEECCS
T ss_pred             Cceeeeeee
Confidence            998886655

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=90.35  E-value=1  Score=36.19  Aligned_cols=77  Identities=12%  Similarity=0.204  Sum_probs=52.0

Q ss_pred             CCCEEEEEcccCCh---HHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC-CCeEEEEcCCCCchhhc-------ccC
Q 024665          143 PGARVLYLGAASGT---TVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYR-------MLV  211 (264)
Q Consensus       143 ~g~~VLDlG~G~G~---~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~-~nV~~i~~D~~~~~~~~-------~~~  211 (264)
                      .|.++|=-|+++|.   ++..|++   ...+|+.+|.+++.++++.+..... .++.++..|+++.....       ...
T Consensus         4 ~gK~alITGas~GIG~aia~~la~---~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAE---EGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDF   80 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            47788888887765   3344443   3468999999977666655544333 38999999999864211       112


Q ss_pred             CCccEEEEcCC
Q 024665          212 GMVDVIFSDVA  222 (264)
Q Consensus       212 ~~fD~V~~d~p  222 (264)
                      +..|+++.+..
T Consensus        81 g~iDilVnnaG   91 (260)
T d1zema1          81 GKIDFLFNNAG   91 (260)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCeehhhhc
Confidence            57999998755

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=90.16  E-value=1.5  Score=35.18  Aligned_cols=79  Identities=14%  Similarity=0.238  Sum_probs=51.3

Q ss_pred             CCCEEEEEcccCChHHHHHHHH-hCCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhh--------cccCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDI-VGPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKY--------RMLVG  212 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~-~~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~--------~~~~~  212 (264)
                      .|++||=.|+..|. ...+|.. .....+|+.++.++.-++++.+.... ..+++++..|+.+....        .....
T Consensus         5 ~gK~alITGas~GI-G~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~g   83 (258)
T d1ae1a_           5 KGTTALVTGGSKGI-GYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDG   83 (258)
T ss_dssp             TTCEEEEESCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTS
T ss_pred             CCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            67889989987664 3333322 22346899999997655555544433 34789999999886521        11224


Q ss_pred             CccEEEEcCC
Q 024665          213 MVDVIFSDVA  222 (264)
Q Consensus       213 ~fD~V~~d~p  222 (264)
                      ..|+++.++.
T Consensus        84 ~idilinnag   93 (258)
T d1ae1a_          84 KLNILVNNAG   93 (258)
T ss_dssp             CCCEEEECCC
T ss_pred             CcEEEecccc
Confidence            6888887765

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=89.97  E-value=0.52  Score=35.73  Aligned_cols=82  Identities=11%  Similarity=0.022  Sum_probs=48.2

Q ss_pred             cCCCCCCEEEEEcccCCh-HHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCc---hhhc-ccCCC
Q 024665          139 IWIKPGARVLYLGAASGT-TVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHP---AKYR-MLVGM  213 (264)
Q Consensus       139 ~~l~~g~~VLDlG~G~G~-~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~---~~~~-~~~~~  213 (264)
                      ..++|+++||=+|||.-. .++.++..++ ..+|+++|.++.-    ++.+++..-..++...-.+.   .... .....
T Consensus        23 a~~~~G~~VlV~GaGgvGl~a~~~ak~~G-~~~Vi~~d~~~~k----l~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G   97 (174)
T d1p0fa2          23 AKVTPGSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTHKDK----FPKAIELGATECLNPKDYDKPIYEVICEKTNGG   97 (174)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGG----HHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSC
T ss_pred             hCCCCCCEEEEECCCchhHHHHHHHHHcC-CceeeccCChHHH----HHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCC
Confidence            359999999999998655 4445566654 5689999999633    34444443334443222221   1100 11236


Q ss_pred             ccEEEEcCCCch
Q 024665          214 VDVIFSDVAQPD  225 (264)
Q Consensus       214 fD~V~~d~p~~~  225 (264)
                      +|+|+-....+.
T Consensus        98 ~d~vid~~g~~~  109 (174)
T d1p0fa2          98 VDYAVECAGRIE  109 (174)
T ss_dssp             BSEEEECSCCHH
T ss_pred             CcEEEEcCCCch
Confidence            899987666543

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=89.84  E-value=0.58  Score=35.19  Aligned_cols=82  Identities=17%  Similarity=0.180  Sum_probs=46.4

Q ss_pred             cCCCCCCEEEEEcccCCh-HHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEc-CCCCchh---hcccCCC
Q 024665          139 IWIKPGARVLYLGAASGT-TVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIE-DARHPAK---YRMLVGM  213 (264)
Q Consensus       139 ~~l~~g~~VLDlG~G~G~-~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~-D~~~~~~---~~~~~~~  213 (264)
                      ..++||++||=+|||... ....++..+ ...+|+++|.+++-    .+.+++..-.+++.. +..+...   .......
T Consensus        24 ~~vk~GdtVlV~GaGG~G~~~~~~~~~~-g~~~Vi~~~~~~~k----~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G   98 (176)
T d2jhfa2          24 AKVTQGSTCAVFGLGGVGLSVIMGCKAA-GAARIIGVDINKDK----FAKAKEVGATECVNPQDYKKPIQEVLTEMSNGG   98 (176)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGG----HHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSC
T ss_pred             hCCCCCCEEEEECCCCcHHHHHHHHHHc-CCceEEeecCcHHH----HHHHHHhCCeeEEecCCchhHHHHHHHHHhcCC
Confidence            359999999999997555 444445554 45699999999643    233333322233322 2222211   0112247


Q ss_pred             ccEEEEcCCCch
Q 024665          214 VDVIFSDVAQPD  225 (264)
Q Consensus       214 fD~V~~d~p~~~  225 (264)
                      +|+||-....+.
T Consensus        99 ~D~vid~~G~~~  110 (176)
T d2jhfa2          99 VDFSFEVIGRLD  110 (176)
T ss_dssp             BSEEEECSCCHH
T ss_pred             CCEEEecCCchh
Confidence            999886665443

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=89.81  E-value=0.99  Score=33.90  Aligned_cols=92  Identities=14%  Similarity=0.220  Sum_probs=51.4

Q ss_pred             cCCCCCCEEEEEcccCCh-HHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhh--cccCCCcc
Q 024665          139 IWIKPGARVLYLGAASGT-TVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY--RMLVGMVD  215 (264)
Q Consensus       139 ~~l~~g~~VLDlG~G~G~-~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~--~~~~~~fD  215 (264)
                      ..++|+++||=+|||+-. .+..++..++ ...|+.+|.++.-.    +.+++..-.+++..+-.++...  ....+.||
T Consensus        24 ~~~~~g~~VlI~G~G~iG~~~~~~ak~~g-~~~v~~~~~~~~k~----~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D   98 (174)
T d1f8fa2          24 LKVTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRL----ELAKQLGATHVINSKTQDPVAAIKEITDGGVN   98 (174)
T ss_dssp             TCCCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHH----HHHHHHTCSEEEETTTSCHHHHHHHHTTSCEE
T ss_pred             hCCCCCCEEEEeCCCHHHhhhhhcccccc-cceeeeeccHHHHH----HHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCc
Confidence            359999999999986433 4556666655 44889999997432    3332222234554443333221  11234799


Q ss_pred             EEEEcCCCchHHHHHHHHHhC
Q 024665          216 VIFSDVAQPDQVCFLCLILFQ  236 (264)
Q Consensus       216 ~V~~d~p~~~~~~~~~~~~l~  236 (264)
                      +||-....+ ......++.+.
T Consensus        99 ~vid~~G~~-~~~~~~~~~~~  118 (174)
T d1f8fa2          99 FALESTGSP-EILKQGVDALG  118 (174)
T ss_dssp             EEEECSCCH-HHHHHHHHTEE
T ss_pred             EEEEcCCcH-HHHHHHHhccc
Confidence            998655533 22334444433

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=89.68  E-value=0.5  Score=33.79  Aligned_cols=81  Identities=6%  Similarity=0.030  Sum_probs=54.2

Q ss_pred             ccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc-cCCCccEEEEcCCCchHHH--
Q 024665          152 AASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-LVGMVDVIFSDVAQPDQVC--  228 (264)
Q Consensus       152 ~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~-~~~~fD~V~~d~p~~~~~~--  228 (264)
                      ||.|.++..+++.+... .|+.+|.++...+.    .. ..++.++.+|+++...+.. -...++.|++..+......  
T Consensus         6 ~G~g~~g~~l~~~L~~~-~i~vi~~d~~~~~~----~~-~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~n~~~   79 (129)
T d2fy8a1           6 CGWSESTLECLRELRGS-EVFVLAEDENVRKK----VL-RSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSETIHC   79 (129)
T ss_dssp             ESCCHHHHHHHHTSCGG-GEEEEESCTTHHHH----HH-HTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHHHHHHH
T ss_pred             ECCCHHHHHHHHHHcCC-CCEEEEcchHHHHH----HH-hcCccccccccCCHHHHHHhhhhcCcEEEEeccchhhhHHH
Confidence            78899999999988644 58889999754322    22 2368999999998764322 2457999998877544333  


Q ss_pred             HHHHHHhCCC
Q 024665          229 FLCLILFQPI  238 (264)
Q Consensus       229 ~~~~~~l~~~  238 (264)
                      ......+.|.
T Consensus        80 ~~~~r~~~~~   89 (129)
T d2fy8a1          80 ILGIRKIDES   89 (129)
T ss_dssp             HHHHHHHCSS
T ss_pred             HHHHHHHCCC
Confidence            2333445555

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=89.59  E-value=1.2  Score=35.81  Aligned_cols=79  Identities=13%  Similarity=0.215  Sum_probs=52.0

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhc-------ccCCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYR-------MLVGM  213 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~-------~~~~~  213 (264)
                      .|.++|=-|+++| +...+|..+ ....+|+.++.+++.++++.+.... ..++.+++.|+++.....       ...+.
T Consensus        10 ~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~g~   88 (255)
T d1fmca_          10 DGKCAIITGAGAG-IGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGK   88 (255)
T ss_dssp             TTCEEEETTTTSH-HHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            5677886666655 444444443 3456899999997666565554443 348999999999864221       11257


Q ss_pred             ccEEEEcCC
Q 024665          214 VDVIFSDVA  222 (264)
Q Consensus       214 fD~V~~d~p  222 (264)
                      +|+++.++.
T Consensus        89 iDilvnnAG   97 (255)
T d1fmca_          89 VDILVNNAG   97 (255)
T ss_dssp             CCEEEECCC
T ss_pred             CCEeeeCCc
Confidence            999998765

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=89.31  E-value=1.6  Score=34.98  Aligned_cols=79  Identities=13%  Similarity=0.211  Sum_probs=51.6

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhc--------ccCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYR--------MLVG  212 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~--------~~~~  212 (264)
                      .|.++|=-|+++|. ...+|..+ ....+|+.+|.+++.++++.+.... ..++.+++.|+++.....        .+..
T Consensus         7 ~GK~alITGas~GI-G~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~~   85 (259)
T d2ae2a_           7 EGCTALVTGGSRGI-GYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHG   85 (259)
T ss_dssp             TTCEEEEESCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTT
T ss_pred             CCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence            57889988887665 33333332 2346899999997666555554433 347899999998864211        1123


Q ss_pred             CccEEEEcCC
Q 024665          213 MVDVIFSDVA  222 (264)
Q Consensus       213 ~fD~V~~d~p  222 (264)
                      ..|+++.+..
T Consensus        86 ~idilvnnAG   95 (259)
T d2ae2a_          86 KLNILVNNAG   95 (259)
T ss_dssp             CCCEEEECCC
T ss_pred             CceEEEECCc
Confidence            6899998865

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=89.19  E-value=0.22  Score=41.39  Aligned_cols=73  Identities=21%  Similarity=0.272  Sum_probs=48.9

Q ss_pred             CEEEEEcccCChHHHHHHHHhC--CCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhh-cccCCCccEEEEcC
Q 024665          145 ARVLYLGAASGTTVSHVSDIVG--PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY-RMLVGMVDVIFSDV  221 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~~--~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~-~~~~~~fD~V~~d~  221 (264)
                      ++||=.|+ +|.+..++++.+-  ..-+|+++|.....    .......++++++++|+++.... ......+|+|+.-+
T Consensus         1 MKILITG~-tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~----~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a   75 (342)
T d2blla1           1 MRVLILGV-NGFIGNHLTERLLREDHYEVYGLDIGSDA----ISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLV   75 (342)
T ss_dssp             CEEEEETC-SSHHHHHHHHHHHHSTTCEEEEEESCCGG----GGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECB
T ss_pred             CEEEEECC-CcHHHHHHHHHHHHCCCCEEEEEeCCCcc----hhhhccCCCeEEEECccCChHHHHHHHHhCCCcccccc
Confidence            46777776 9999999987652  22489999987422    22223346899999999875321 11234699999765


Q ss_pred             C
Q 024665          222 A  222 (264)
Q Consensus       222 p  222 (264)
                      .
T Consensus        76 ~   76 (342)
T d2blla1          76 A   76 (342)
T ss_dssp             C
T ss_pred             c
Confidence            5

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=88.88  E-value=1.2  Score=36.86  Aligned_cols=85  Identities=20%  Similarity=0.162  Sum_probs=55.8

Q ss_pred             cccCCCCCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHH---HHhhcCCCeEEEEcCCCCchhhcccCC
Q 024665          137 DNIWIKPGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLV---NMAKKRTNVIPIIEDARHPAKYRMLVG  212 (264)
Q Consensus       137 ~~~~l~~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~---~~a~~~~nV~~i~~D~~~~~~~~~~~~  212 (264)
                      +...+++|++||=.|+. |.+..+++..+ ...-+|+++..+..-...+.   .......+..++.+|+.+...+.....
T Consensus         4 ~~~~~~~gk~VlVTG~s-GfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~   82 (342)
T d1y1pa1           4 DNAVLPEGSLVLVTGAN-GFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIK   82 (342)
T ss_dssp             TTCSSCTTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTT
T ss_pred             CCCCCCCcCEEEEECCC-CHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcc
Confidence            34457889999988876 99999998755 33348999887743322222   222222356678899988765544556


Q ss_pred             CccEEEEcCC
Q 024665          213 MVDVIFSDVA  222 (264)
Q Consensus       213 ~fD~V~~d~p  222 (264)
                      .+|.|+....
T Consensus        83 ~~~~v~~~a~   92 (342)
T d1y1pa1          83 GAAGVAHIAS   92 (342)
T ss_dssp             TCSEEEECCC
T ss_pred             cchhhhhhcc
Confidence            7899986655

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.79  E-value=1.4  Score=35.37  Aligned_cols=76  Identities=16%  Similarity=0.261  Sum_probs=50.2

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc-------cCCCc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMV  214 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~-------~~~~f  214 (264)
                      .|.++|=-|+++|. ...+|+.+ ....+|+.+|.+++.++++.+   ...++.+++.|+++......       ..+..
T Consensus         5 ~GK~alITGas~GI-G~aia~~la~~Ga~V~i~~r~~~~~~~~~~---~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i   80 (250)
T d1ydea1           5 AGKVVVVTGGGRGI-GAGIVRAFVNSGARVVICDKDESGGRALEQ---ELPGAVFILCDVTQEDDVKTLVSETIRRFGRL   80 (250)
T ss_dssp             TTCEEEEETCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHH---HCTTEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHH---hcCCCeEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence            47788888887765 33333322 234689999999765544333   33578999999998653211       12578


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+++.++.
T Consensus        81 DilVnnAG   88 (250)
T d1ydea1          81 DCVVNNAG   88 (250)
T ss_dssp             CEEEECCC
T ss_pred             CEEEeccc
Confidence            99998865

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=88.76  E-value=0.59  Score=34.87  Aligned_cols=44  Identities=20%  Similarity=0.388  Sum_probs=32.8

Q ss_pred             ccccCCCCCCEEEEEccc--CChHHHHHHHHhCCCCEEEEEeCChHH
Q 024665          136 VDNIWIKPGARVLYLGAA--SGTTVSHVSDIVGPNGVVYAVEFSHRS  180 (264)
Q Consensus       136 l~~~~l~~g~~VLDlG~G--~G~~s~~la~~~~~~g~V~avD~s~~~  180 (264)
                      +.+..++|+++||=+||+  .|.+++.++...+ ..+|+++|.++.-
T Consensus        20 l~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g-~~~V~~~~~~~~~   65 (170)
T d1jvba2          20 VRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVS-GATIIGVDVREEA   65 (170)
T ss_dssp             HHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHT-CCEEEEEESSHHH
T ss_pred             HHHhCCCCCCEEEEEeccccceeeeeecccccc-cccccccccchhh
Confidence            344569999999999973  4556777777764 4589999999643

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.39  E-value=1.9  Score=34.24  Aligned_cols=76  Identities=25%  Similarity=0.275  Sum_probs=50.3

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhc---ccCCCccEEE
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR---MLVGMVDVIF  218 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~---~~~~~fD~V~  218 (264)
                      .|.+||=.|+++|. ...+|+.+ ....+|+.+|.++.-++++.+   ...++.+++.|+.+.....   ...+.+|+++
T Consensus         6 ~GK~~lITGas~GI-G~aia~~la~~G~~V~~~~r~~~~l~~~~~---~~~~~~~~~~Dv~d~~~v~~~~~~~g~iDilV   81 (244)
T d1pr9a_           6 AGRRVLVTGAGKGI-GRGTVQALHATGARVVAVSRTQADLDSLVR---ECPGIEPVCVDLGDWEATERALGSVGPVDLLV   81 (244)
T ss_dssp             TTCEEEEESTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHH---HSTTCEEEECCTTCHHHHHHHHTTCCCCCEEE
T ss_pred             CCCEEEEeCCCCHH-HHHHHHHHHHcCCEEEEEECCHHHHHHHHH---hcCCCeEEEEeCCCHHHHHHHHHHhCCceEEE
Confidence            67899999988764 33333332 234689999999755444333   3347899999998865321   1235799999


Q ss_pred             EcCC
Q 024665          219 SDVA  222 (264)
Q Consensus       219 ~d~p  222 (264)
                      .+..
T Consensus        82 nnAg   85 (244)
T d1pr9a_          82 NNAA   85 (244)
T ss_dssp             ECCC
T ss_pred             eccc
Confidence            8865

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.19  E-value=1.3  Score=35.66  Aligned_cols=77  Identities=17%  Similarity=0.214  Sum_probs=51.8

Q ss_pred             CCCEEEEEcccCCh---HHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhc--------cc
Q 024665          143 PGARVLYLGAASGT---TVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYR--------ML  210 (264)
Q Consensus       143 ~g~~VLDlG~G~G~---~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~--------~~  210 (264)
                      .+.+||=-|+++|.   ++..|++   ...+|+.++.+++.+++..+... ...++.++..|+++.....        .+
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~---~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAG---FGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMF   83 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHHh
Confidence            47788888887776   3334443   34689999999765555554433 3348999999998864211        11


Q ss_pred             CCCccEEEEcCC
Q 024665          211 VGMVDVIFSDVA  222 (264)
Q Consensus       211 ~~~fD~V~~d~p  222 (264)
                      .+.+|+++.+..
T Consensus        84 ~g~idilvnnAG   95 (259)
T d1xq1a_          84 GGKLDILINNLG   95 (259)
T ss_dssp             TTCCSEEEEECC
T ss_pred             CCCccccccccc
Confidence            257899999876

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.05  E-value=0.83  Score=36.34  Aligned_cols=76  Identities=17%  Similarity=0.266  Sum_probs=50.5

Q ss_pred             EEEEEcccCChHHHHHHHHh----CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhc----c-----cCC
Q 024665          146 RVLYLGAASGTTVSHVSDIV----GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR----M-----LVG  212 (264)
Q Consensus       146 ~VLDlG~G~G~~s~~la~~~----~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~----~-----~~~  212 (264)
                      +||=-|+.+| +...+|+.+    ....+|+.++.+++.++++.+......++.++..|+.+.....    .     ...
T Consensus         4 tilITGas~G-IG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~   82 (248)
T d1snya_           4 SILITGCNRG-LGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVTKDQ   82 (248)
T ss_dssp             EEEESCCSSH-HHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHHGGG
T ss_pred             EEEEeCCCCH-HHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhcCCcEEEEEEEeccHHHHHHHHhhhHHHhhcC
Confidence            5776666555 666666543    3446899999986555555555555669999999999865321    1     124


Q ss_pred             CccEEEEcCC
Q 024665          213 MVDVIFSDVA  222 (264)
Q Consensus       213 ~fD~V~~d~p  222 (264)
                      .+|+++.|..
T Consensus        83 ~iDiLvnNAg   92 (248)
T d1snya_          83 GLNVLFNNAG   92 (248)
T ss_dssp             CCSEEEECCC
T ss_pred             CcceEEeecc
Confidence            6899998854

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=87.65  E-value=1.7  Score=34.87  Aligned_cols=77  Identities=18%  Similarity=0.227  Sum_probs=50.7

Q ss_pred             CCCEEEEEcccCCh---HHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh-c--CCCeEEEEcCCCCchhhcc-------
Q 024665          143 PGARVLYLGAASGT---TVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK-K--RTNVIPIIEDARHPAKYRM-------  209 (264)
Q Consensus       143 ~g~~VLDlG~G~G~---~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~-~--~~nV~~i~~D~~~~~~~~~-------  209 (264)
                      .+.++|=-|+++|.   ++..|++.   ..+|+.+|.+++.+++..+... .  ..++.+++.|+++......       
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~---Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~   79 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAE---GAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTE   79 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHH
Confidence            46778888888776   44444443   5689999999765544443322 2  2378999999998653211       


Q ss_pred             cCCCccEEEEcCC
Q 024665          210 LVGMVDVIFSDVA  222 (264)
Q Consensus       210 ~~~~fD~V~~d~p  222 (264)
                      ..+.+|+++.|..
T Consensus        80 ~~G~iDiLVnnAG   92 (258)
T d1iy8a_          80 RFGRIDGFFNNAG   92 (258)
T ss_dssp             HHSCCSEEEECCC
T ss_pred             HhCCCCEEEECCc
Confidence            1257999998754

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.54  E-value=1.7  Score=34.62  Aligned_cols=79  Identities=18%  Similarity=0.241  Sum_probs=51.8

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCCCchhhcc-------cC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRM-------LV  211 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~~~~~~~~-------~~  211 (264)
                      .|.+||=-|+++|. ...+|..+ ....+|+.+|.+++.+++..+.....   .++.+++.|+++......       ..
T Consensus         2 ~GKvalITGas~GI-G~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (254)
T d2gdza1           2 NGKVALVTGAAQGI-GRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   80 (254)
T ss_dssp             TTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            46778888887665 44343332 23568999999976655554443322   279999999998653211       12


Q ss_pred             CCccEEEEcCC
Q 024665          212 GMVDVIFSDVA  222 (264)
Q Consensus       212 ~~fD~V~~d~p  222 (264)
                      +.+|+++.+..
T Consensus        81 G~iDilVnnAg   91 (254)
T d2gdza1          81 GRLDILVNNAG   91 (254)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCcCeeccccc
Confidence            57999998877

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.51  E-value=1.4  Score=35.32  Aligned_cols=79  Identities=10%  Similarity=0.106  Sum_probs=49.9

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHh-h-cCCCeEEEEcCCCCchhhcc-------cCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMA-K-KRTNVIPIIEDARHPAKYRM-------LVG  212 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a-~-~~~nV~~i~~D~~~~~~~~~-------~~~  212 (264)
                      .+.++|=-|+++|. ...+|+.+ ....+|+.+|.+++.+++..+.. . ...++.++..|+++......       ..+
T Consensus         4 ~gK~~lITGas~GI-G~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   82 (251)
T d1vl8a_           4 RGRVALVTGGSRGL-GFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFG   82 (251)
T ss_dssp             TTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            46788888988765 33333222 23468999999965544433322 2 23478999999998653211       125


Q ss_pred             CccEEEEcCC
Q 024665          213 MVDVIFSDVA  222 (264)
Q Consensus       213 ~fD~V~~d~p  222 (264)
                      .+|+++.++.
T Consensus        83 ~iDiLVnnAG   92 (251)
T d1vl8a_          83 KLDTVVNAAG   92 (251)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7999998865

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=87.40  E-value=1.5  Score=34.94  Aligned_cols=77  Identities=17%  Similarity=0.271  Sum_probs=50.2

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhc-------ccCCCc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR-------MLVGMV  214 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~-------~~~~~f  214 (264)
                      .|.++|=-|+++|. ...+|+.+ ....+|+.+|.+++.++++.+..  ..++.+++.|+++.....       ...+..
T Consensus         3 ~gK~alITGas~GI-G~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   79 (243)
T d1q7ba_           3 EGKIALVTGASRGI-GRAIAETLAARGAKVIGTATSENGAQAISDYL--GANGKGLMLNVTDPASIESVLEKIRAEFGEV   79 (243)
T ss_dssp             TTCEEEESSCSSHH-HHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH--GGGEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred             CCCEEEEeCCCCHH-HHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHh--CCCCcEEEEEecCHHHhhhhhhhhhcccCCc
Confidence            46677777877665 44443333 23458999999987665555443  236889999999864221       113579


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+++.++.
T Consensus        80 DilVnnAg   87 (243)
T d1q7ba_          80 DILVNNAG   87 (243)
T ss_dssp             SEEEECCC
T ss_pred             ceehhhhh
Confidence            99998765

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=87.40  E-value=1.3  Score=35.55  Aligned_cols=77  Identities=19%  Similarity=0.311  Sum_probs=50.3

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhc-------ccCCCc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR-------MLVGMV  214 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~-------~~~~~f  214 (264)
                      .+.++|=-|+++| +...+|..+ ....+|+.+|.+++.++++.+..  ..+..+++.|+++.....       ...+..
T Consensus         5 ~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i   81 (253)
T d1hxha_           5 QGKVALVTGGASG-VGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL--GERSMFVRHDVSSEADWTLVMAAVQRRLGTL   81 (253)
T ss_dssp             TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH--CTTEEEECCCTTCHHHHHHHHHHHHHHHCSC
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh--CCCeEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            4677887777666 444444332 23468999999976665554433  347889999998864321       112578


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+++.++.
T Consensus        82 DilVnnAG   89 (253)
T d1hxha_          82 NVLVNNAG   89 (253)
T ss_dssp             CEEEECCC
T ss_pred             CeEEeccc
Confidence            99998876

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.35  E-value=2.4  Score=33.58  Aligned_cols=76  Identities=22%  Similarity=0.255  Sum_probs=49.9

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc---cCCCccEEE
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM---LVGMVDVIF  218 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~---~~~~fD~V~  218 (264)
                      .|.++|=-|+++|. ...+|+.+ ....+|+.+|.+++-++++.   ....++.+++.|+.+......   ..+..|+++
T Consensus         4 ~GK~alITGas~GI-G~aia~~la~~Ga~V~~~~r~~~~l~~~~---~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDilV   79 (242)
T d1cyda_           4 SGLRALVTGAGKGI-GRDTVKALHASGAKVVAVTRTNSDLVSLA---KECPGIEPVCVDLGDWDATEKALGGIGPVDLLV   79 (242)
T ss_dssp             TTCEEEEESTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHH---HHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEE
T ss_pred             CCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHH---HhcCCCeEEEEeCCCHHHHHHHHHHcCCCeEEE
Confidence            57889988877764 33333332 33568999999975443333   334578999999998653211   125789999


Q ss_pred             EcCC
Q 024665          219 SDVA  222 (264)
Q Consensus       219 ~d~p  222 (264)
                      .+..
T Consensus        80 nnAg   83 (242)
T d1cyda_          80 NNAA   83 (242)
T ss_dssp             ECCC
T ss_pred             ECCc
Confidence            8865

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.26  E-value=1.8  Score=34.56  Aligned_cols=77  Identities=16%  Similarity=0.227  Sum_probs=50.9

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhc-------ccCCCc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR-------MLVGMV  214 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~-------~~~~~f  214 (264)
                      .|.++|=-|+++|. ...+|+.+ ....+|+.+|.+++.++++.+..  ..++.+++.|+++.....       ...+.+
T Consensus         5 ~gK~alITGas~GI-G~aia~~la~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   81 (244)
T d1nffa_           5 TGKVALVSGGARGM-GASHVRAMVAEGAKVVFGDILDEEGKAMAAEL--ADAARYVHLDVTQPAQWKAAVDTAVTAFGGL   81 (244)
T ss_dssp             TTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT--GGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh--hCcceEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            56788888888775 33333322 23468999999976655554433  247889999999865321       112478


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+++.++.
T Consensus        82 dilinnAG   89 (244)
T d1nffa_          82 HVLVNNAG   89 (244)
T ss_dssp             CEEEECCC
T ss_pred             eEEEECCc
Confidence            99998866

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=87.09  E-value=0.28  Score=40.83  Aligned_cols=80  Identities=20%  Similarity=0.195  Sum_probs=53.0

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccC--CCccEEEE
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLV--GMVDVIFS  219 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~--~~fD~V~~  219 (264)
                      .+.+||=.|+ +|.+..++++.+- ..-+|+++|.+......+.+......+++++.+|++++.......  ..+|+|+.
T Consensus         7 ~~KkILVTG~-tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~~~~v~~   85 (356)
T d1rkxa_           7 QGKRVFVTGH-TGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFH   85 (356)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhhhcccCCeEEEeeccChHhhhhhhhhchhhhhhh
Confidence            4678888765 5999988876653 234899999874322233444444568999999999875432222  25688877


Q ss_pred             cCCC
Q 024665          220 DVAQ  223 (264)
Q Consensus       220 d~p~  223 (264)
                      -++.
T Consensus        86 ~aa~   89 (356)
T d1rkxa_          86 MAAQ   89 (356)
T ss_dssp             CCSC
T ss_pred             hhcc
Confidence            6653

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=87.01  E-value=1.5  Score=35.21  Aligned_cols=75  Identities=15%  Similarity=0.162  Sum_probs=49.6

Q ss_pred             CCCEEEEEcccCCh---HHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc-------cCC
Q 024665          143 PGARVLYLGAASGT---TVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVG  212 (264)
Q Consensus       143 ~g~~VLDlG~G~G~---~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~-------~~~  212 (264)
                      .|.++|=-|+++|.   ++..|++   ...+|+.+|.+++.++++++..  ..++.+++.|+++......       ..+
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~---~Ga~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   78 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVA---AGARVVLADVLDEEGAATAREL--GDAARYQHLDVTIEEDWQRVVAYAREEFG   78 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHTT--GGGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHh--CCceEEEEcccCCHHHHHHHHHHHHHHcC
Confidence            57788989988875   3333333   3468999999975544433322  2378999999998653211       125


Q ss_pred             CccEEEEcCC
Q 024665          213 MVDVIFSDVA  222 (264)
Q Consensus       213 ~fD~V~~d~p  222 (264)
                      .+|+++.++.
T Consensus        79 ~iDilVnnAg   88 (254)
T d1hdca_          79 SVDGLVNNAG   88 (254)
T ss_dssp             CCCEEEECCC
T ss_pred             CccEEEecCc
Confidence            7899998765

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=86.57  E-value=1.9  Score=34.71  Aligned_cols=79  Identities=14%  Similarity=0.172  Sum_probs=50.1

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcC----CCeEEEEcCCCCchhhcc-------c
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR----TNVIPIIEDARHPAKYRM-------L  210 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~----~nV~~i~~D~~~~~~~~~-------~  210 (264)
                      .+.++|=.|+++|. ...+|..+ ....+|+.+|.+++.++++.+.....    .++.+++.|+++......       .
T Consensus         4 ~gK~alVTGas~GI-G~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~   82 (272)
T d1xkqa_           4 SNKTVIITGSSNGI-GRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   82 (272)
T ss_dssp             TTCEEEETTCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            46677777876664 33333332 23468999999976655555544332    269999999998653211       1


Q ss_pred             CCCccEEEEcCC
Q 024665          211 VGMVDVIFSDVA  222 (264)
Q Consensus       211 ~~~fD~V~~d~p  222 (264)
                      .+.+|+++.+..
T Consensus        83 ~g~iDilvnnAG   94 (272)
T d1xkqa_          83 FGKIDVLVNNAG   94 (272)
T ss_dssp             HSCCCEEEECCC
T ss_pred             hCCceEEEeCCc
Confidence            257899998754

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=86.49  E-value=4.3  Score=32.13  Aligned_cols=75  Identities=13%  Similarity=0.193  Sum_probs=48.0

Q ss_pred             EEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhc-------ccCCCccEE
Q 024665          147 VLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYR-------MLVGMVDVI  217 (264)
Q Consensus       147 VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~-------~~~~~fD~V  217 (264)
                      +|=-|+++|. ...+|..+ ....+|+.+|.+++.++++.+.... ..++.+++.|+++.....       ...+.+|++
T Consensus         4 alITGas~GI-G~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDil   82 (255)
T d1gega_           4 ALVTGAGQGI-GKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFDVI   82 (255)
T ss_dssp             EEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCCEE
T ss_pred             EEEcCCccHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCccEE
Confidence            4666766555 33333332 2346899999997666555554433 348999999999865321       113579999


Q ss_pred             EEcCC
Q 024665          218 FSDVA  222 (264)
Q Consensus       218 ~~d~p  222 (264)
                      +.++.
T Consensus        83 VnnAG   87 (255)
T d1gega_          83 VNNAG   87 (255)
T ss_dssp             EECCC
T ss_pred             Eeccc
Confidence            98865

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=86.40  E-value=1.7  Score=34.95  Aligned_cols=79  Identities=18%  Similarity=0.207  Sum_probs=49.9

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCC-hHHHHHHHHHhhc-CCCeEEEEcCCCCchhhc-------ccCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFS-HRSGRDLVNMAKK-RTNVIPIIEDARHPAKYR-------MLVG  212 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s-~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~-------~~~~  212 (264)
                      .|.+||=.|+.+|. ...+|+.+- ...+|+.++.+ ++.++++.+.... ..++.+++.|+.+.....       ...+
T Consensus        17 ~gK~~lITGas~GI-G~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g   95 (272)
T d1g0oa_          17 EGKVALVTGAGRGI-GREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFG   95 (272)
T ss_dssp             TTCEEEETTTTSHH-HHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHH-HHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHhC
Confidence            46788888887765 333333322 24589999987 4555555444433 347999999999864221       1125


Q ss_pred             CccEEEEcCC
Q 024665          213 MVDVIFSDVA  222 (264)
Q Consensus       213 ~fD~V~~d~p  222 (264)
                      ..|+++.+..
T Consensus        96 ~idilV~nag  105 (272)
T d1g0oa_          96 KLDIVCSNSG  105 (272)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCccccccc
Confidence            7899998866

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.00  E-value=3.6  Score=33.59  Aligned_cols=80  Identities=15%  Similarity=0.191  Sum_probs=51.0

Q ss_pred             CCCCEEEEEcccCChHHHHHHHH-hCCCCEEEEEeCChHHHHHHHHHhh------cCCCeEEEEcCCCCchhhcc-----
Q 024665          142 KPGARVLYLGAASGTTVSHVSDI-VGPNGVVYAVEFSHRSGRDLVNMAK------KRTNVIPIIEDARHPAKYRM-----  209 (264)
Q Consensus       142 ~~g~~VLDlG~G~G~~s~~la~~-~~~~g~V~avD~s~~~~~~l~~~a~------~~~nV~~i~~D~~~~~~~~~-----  209 (264)
                      -.|.++|=-|+++|. ...+|.. .....+|+.+|.+++.+++..+...      ...++.+++.|+++......     
T Consensus        10 L~gKvalITGas~GI-G~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~   88 (297)
T d1yxma1          10 LQGQVAIVTGGATGI-GKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST   88 (297)
T ss_dssp             TTTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHH
Confidence            367888888877765 3333332 2335689999999655444333222      12379999999998753211     


Q ss_pred             --cCCCccEEEEcCC
Q 024665          210 --LVGMVDVIFSDVA  222 (264)
Q Consensus       210 --~~~~fD~V~~d~p  222 (264)
                        ..+..|+++.++.
T Consensus        89 ~~~~G~iDiLVnnAg  103 (297)
T d1yxma1          89 LDTFGKINFLVNNGG  103 (297)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHhCCeEEEEeecc
Confidence              1257899998865

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.91  E-value=0.84  Score=36.93  Aligned_cols=78  Identities=17%  Similarity=0.091  Sum_probs=48.2

Q ss_pred             CCEE-EEEcccCChHHHHHHHHh-C-CCCEEEEEeCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhc-------ccCC
Q 024665          144 GARV-LYLGAASGTTVSHVSDIV-G-PNGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYR-------MLVG  212 (264)
Q Consensus       144 g~~V-LDlG~G~G~~s~~la~~~-~-~~g~V~avD~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~-------~~~~  212 (264)
                      |.+| |=-|+.+ .+...+|+.+ . ...+|+.++.+++-+++..+... ...++.+++.|+.+....+       ...+
T Consensus         2 g~rVAlVTGas~-GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g   80 (275)
T d1wmaa1           2 GIHVALVTGGNK-GIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYG   80 (275)
T ss_dssp             CCCEEEESSCSS-HHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCeEEEECCCCC-HHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcC
Confidence            4455 4445544 4444444332 1 24589999999766555555443 3358999999999865321       1125


Q ss_pred             CccEEEEcCC
Q 024665          213 MVDVIFSDVA  222 (264)
Q Consensus       213 ~fD~V~~d~p  222 (264)
                      .+|+++.|.-
T Consensus        81 ~iDiLVnNAG   90 (275)
T d1wmaa1          81 GLDVLVNNAG   90 (275)
T ss_dssp             SEEEEEECCC
T ss_pred             CcEEEEEcCC
Confidence            7999999865

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.80  E-value=2.6  Score=31.20  Aligned_cols=39  Identities=21%  Similarity=0.307  Sum_probs=31.2

Q ss_pred             CCCCCCEEEEEcc--cCChHHHHHHHHhCCCCEEEEEeCChHH
Q 024665          140 WIKPGARVLYLGA--ASGTTVSHVSDIVGPNGVVYAVEFSHRS  180 (264)
Q Consensus       140 ~l~~g~~VLDlG~--G~G~~s~~la~~~~~~g~V~avD~s~~~  180 (264)
                      .++|+++||-.||  +.|..++.+|..++  .+|++++.+++-
T Consensus        25 ~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G--~~vi~~~~~~~~   65 (174)
T d1yb5a2          25 CVKAGESVLVHGASGGVGLAACQIARAYG--LKILGTAGTEEG   65 (174)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEESSHHH
T ss_pred             CCCCCCEEEEEeccccccccccccccccC--cccccccccccc
Confidence            5899999999997  45667888888864  589999988643

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=85.60  E-value=0.51  Score=35.40  Aligned_cols=81  Identities=16%  Similarity=0.158  Sum_probs=46.4

Q ss_pred             cCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCC-c-hhh--cccCCCc
Q 024665          139 IWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARH-P-AKY--RMLVGMV  214 (264)
Q Consensus       139 ~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~-~-~~~--~~~~~~f  214 (264)
                      ..++|+++||=+|||++.....+.........|+++|.+++-    .+.+++..--+++..+-.+ . ...  ......+
T Consensus        24 a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~r----l~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G~   99 (175)
T d1cdoa2          24 AKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDK----FEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGV   99 (175)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG----HHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCB
T ss_pred             hCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHH----HHHHHHcCCcEEEcCCCcchhHHHHHHhhccCCc
Confidence            369999999999999966555443333446689999999643    2334333223344322111 1 111  0112368


Q ss_pred             cEEEEcCCC
Q 024665          215 DVIFSDVAQ  223 (264)
Q Consensus       215 D~V~~d~p~  223 (264)
                      |+|+-....
T Consensus       100 d~vid~~G~  108 (175)
T d1cdoa2         100 DFSLECVGN  108 (175)
T ss_dssp             SEEEECSCC
T ss_pred             ceeeeecCC
Confidence            999766554

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=85.59  E-value=0.62  Score=35.40  Aligned_cols=83  Identities=13%  Similarity=0.133  Sum_probs=46.8

Q ss_pred             cCCCCCCEEEEEcccCChHH-HHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEE-cCCCCchh-h--cccCCC
Q 024665          139 IWIKPGARVLYLGAASGTTV-SHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPII-EDARHPAK-Y--RMLVGM  213 (264)
Q Consensus       139 ~~l~~g~~VLDlG~G~G~~s-~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~-~D~~~~~~-~--~~~~~~  213 (264)
                      ..+++++.||=+|||.-.+. +.++... ...+|+++|.+++-    ++.+++..-.+++. .|..+... .  ......
T Consensus        25 ~~~~~g~tVlI~G~GgvGl~ai~~ak~~-G~~~Vi~vd~~~~k----l~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G   99 (176)
T d1d1ta2          25 GKVKPGSTCVVFGLGGVGLSVIMGCKSA-GASRIIGIDLNKDK----FEKAMAVGATECISPKDSTKPISEVLSEMTGNN   99 (176)
T ss_dssp             SCCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGG----HHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSC
T ss_pred             hCCCCCCEEEEECCCchhHHHHHHHHHc-CCceEEEecCcHHH----HHHHHhcCCcEEECccccchHHHHHHHHhcccc
Confidence            35999999999999865544 4445443 35689999999643    34443332122332 12111111 0  011246


Q ss_pred             ccEEEEcCCCchH
Q 024665          214 VDVIFSDVAQPDQ  226 (264)
Q Consensus       214 fD~V~~d~p~~~~  226 (264)
                      +|+|+-....+..
T Consensus       100 ~d~vi~~~g~~~~  112 (176)
T d1d1ta2         100 VGYTFEVIGHLET  112 (176)
T ss_dssp             CCEEEECSCCHHH
T ss_pred             ceEEEEeCCchHH
Confidence            9988876665543

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=85.13  E-value=2.9  Score=33.58  Aligned_cols=79  Identities=13%  Similarity=0.187  Sum_probs=50.1

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcC----CCeEEEEcCCCCchhhcc-------c
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR----TNVIPIIEDARHPAKYRM-------L  210 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~----~nV~~i~~D~~~~~~~~~-------~  210 (264)
                      .|.++|=-|+++|. ...+|..+ ....+|+.+|.+++.++++.+.....    .++.++..|+++......       .
T Consensus         3 ~gK~alITGas~GI-G~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (274)
T d1xhla_           3 SGKSVIITGSSNGI-GRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK   81 (274)
T ss_dssp             TTCEEEETTCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence            46778888887765 33333322 23468999999976555544433222    378999999998753211       1


Q ss_pred             CCCccEEEEcCC
Q 024665          211 VGMVDVIFSDVA  222 (264)
Q Consensus       211 ~~~fD~V~~d~p  222 (264)
                      .+.+|+++.+..
T Consensus        82 ~G~iDilVnnAG   93 (274)
T d1xhla_          82 FGKIDILVNNAG   93 (274)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCceEEEeecc
Confidence            247899998754

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=84.74  E-value=2.2  Score=31.40  Aligned_cols=67  Identities=15%  Similarity=0.082  Sum_probs=37.7

Q ss_pred             EEEEEcccCChHHHHHHHHh---CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665          146 RVLYLGAASGTTVSHVSDIV---GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       146 ~VLDlG~G~G~~s~~la~~~---~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      +|+=+||  |.....+|..+   +...+|+++|.++...    +.+.+...+.....+..+.     .....|+|++.+|
T Consensus         3 ~I~IIG~--G~mG~sla~~L~~~g~~~~I~~~D~~~~~~----~~a~~~~~~~~~~~~~~~~-----~~~~~dlIila~p   71 (171)
T d2g5ca2           3 NVLIVGV--GFMGGSFAKSLRRSGFKGKIYGYDINPESI----SKAVDLGIIDEGTTSIAKV-----EDFSPDFVMLSSP   71 (171)
T ss_dssp             EEEEESC--SHHHHHHHHHHHHTTCCSEEEEECSCHHHH----HHHHHTTSCSEEESCGGGG-----GGTCCSEEEECSC
T ss_pred             EEEEEcc--CHHHHHHHHHHHhcCCCeEEEEEECChHHH----HHHHHhhcchhhhhhhhhh-----hccccccccccCC
Confidence            4777877  55555555443   2345899999998653    3333332222222222221     1246899998887


Q ss_pred             C
Q 024665          223 Q  223 (264)
Q Consensus       223 ~  223 (264)
                      .
T Consensus        72 ~   72 (171)
T d2g5ca2          72 V   72 (171)
T ss_dssp             H
T ss_pred             c
Confidence            3

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.54  E-value=3.3  Score=30.11  Aligned_cols=42  Identities=19%  Similarity=0.160  Sum_probs=29.9

Q ss_pred             cccCCCCCCEEEEEcccCCh-HHHHHHHHhCCCCEEEEEeCChHH
Q 024665          137 DNIWIKPGARVLYLGAASGT-TVSHVSDIVGPNGVVYAVEFSHRS  180 (264)
Q Consensus       137 ~~~~l~~g~~VLDlG~G~G~-~s~~la~~~~~~g~V~avD~s~~~  180 (264)
                      ....++|+++||=.|||+=. +.+.++...  ..+|+++|.++.-
T Consensus        21 ~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~--g~~v~~~~~~~~r   63 (168)
T d1rjwa2          21 KVTGAKPGEWVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEK   63 (168)
T ss_dssp             HHHTCCTTCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHH
T ss_pred             HHhCCCCCCEEEEeecccchhhhhHHHhcC--CCeEeccCCCHHH
Confidence            34469999999999987755 444445543  3489999999644

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.42  E-value=2.6  Score=30.89  Aligned_cols=42  Identities=19%  Similarity=0.283  Sum_probs=31.0

Q ss_pred             cccCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCEEEEEeCChHH
Q 024665          137 DNIWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRS  180 (264)
Q Consensus       137 ~~~~l~~g~~VLDlG~G~-G~~s~~la~~~~~~g~V~avD~s~~~  180 (264)
                      ....++|+++||=+|||+ |.+++.++...+  .+|+++|.++.-
T Consensus        21 ~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G--~~Vi~~~~~~~~   63 (166)
T d1llua2          21 KQTNARPGQWVAISGIGGLGHVAVQYARAMG--LHVAAIDIDDAK   63 (166)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHH
T ss_pred             HHhCCCCCCEEEEeeccccHHHHHHHHHHcC--CccceecchhhH
Confidence            344699999999999865 345566666654  589999999743

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=84.31  E-value=3.1  Score=32.85  Aligned_cols=75  Identities=19%  Similarity=0.260  Sum_probs=49.0

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc-------cCCCc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMV  214 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~-------~~~~f  214 (264)
                      .+.+||=-|+++|. ...+|+.+ ....+|+.+|.+++.++++.    ...++++++.|+.+......       ..+.+
T Consensus         4 ~gK~~lITGas~GI-G~aia~~l~~~G~~V~~~~r~~~~l~~~~----~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   78 (242)
T d1ulsa_           4 KDKAVLITGAAHGI-GRATLELFAKEGARLVACDIEEGPLREAA----EAVGAHPVVMDVADPASVERGFAEALAHLGRL   78 (242)
T ss_dssp             TTCEEEEESTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHH----HTTTCEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHH----HHcCCeEEEEecCCHHHHHHHHHHHHHhcCCc
Confidence            46788888888775 33333333 23468999999975543332    33478899999998653211       12479


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+++.+..
T Consensus        79 DilVnnAG   86 (242)
T d1ulsa_          79 DGVVHYAG   86 (242)
T ss_dssp             CEEEECCC
T ss_pred             eEEEECCc
Confidence            99998754

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=84.30  E-value=2.8  Score=33.34  Aligned_cols=78  Identities=17%  Similarity=0.140  Sum_probs=49.8

Q ss_pred             CCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhc-------ccCCCc
Q 024665          144 GARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYR-------MLVGMV  214 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~-------~~~~~f  214 (264)
                      ++.+|=-|+++|. ...+|..+ ....+|+.+|.+++.+++..+.... ..++.+++.|+++.....       ...+..
T Consensus         2 gKValITGas~GI-G~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i   80 (257)
T d2rhca1           2 SEVALVTGATSGI-GLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPV   80 (257)
T ss_dssp             CCEEEEESCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred             CCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            4455767766655 44444333 2346899999997665555544333 348999999999875321       113579


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+++.|+.
T Consensus        81 DilVnnAG   88 (257)
T d2rhca1          81 DVLVNNAG   88 (257)
T ss_dssp             SEEEECCC
T ss_pred             CEEEeccc
Confidence            99998865

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=84.16  E-value=1.3  Score=33.03  Aligned_cols=78  Identities=14%  Similarity=0.103  Sum_probs=45.2

Q ss_pred             CCCCCCEEEEEcccCCh-HHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc--cCCCccE
Q 024665          140 WIKPGARVLYLGAASGT-TVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM--LVGMVDV  216 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~-~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~--~~~~fD~  216 (264)
                      .++|+++||=+|||+-. +++.++...+ ...|+++|.+++-    .+.+++..-.+++..+-........  ....+|+
T Consensus        29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g-~~~vv~~~~~~~k----~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~  103 (172)
T d1h2ba2          29 TLYPGAYVAIVGVGGLGHIAVQLLKVMT-PATVIALDVKEEK----LKLAERLGADHVVDARRDPVKQVMELTRGRGVNV  103 (172)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESSHHH----HHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEE
T ss_pred             ccCCCCEEEEeCCChHHHHHHHHHHhhc-CcccccccchhHH----HHHHhhcccceeecCcccHHHHHHHhhCCCCceE
Confidence            37899999999987644 4456666665 4589999999743    2333333333445443222211111  1235898


Q ss_pred             EEEcCC
Q 024665          217 IFSDVA  222 (264)
Q Consensus       217 V~~d~p  222 (264)
                      |+-...
T Consensus       104 vid~~g  109 (172)
T d1h2ba2         104 AMDFVG  109 (172)
T ss_dssp             EEESSC
T ss_pred             EEEecC
Confidence            886555

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=84.01  E-value=4.4  Score=32.13  Aligned_cols=77  Identities=17%  Similarity=0.204  Sum_probs=50.6

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc-------cCCCc
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMV  214 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~-------~~~~f  214 (264)
                      .+.++|=-|+++|. ...+|+.+ ....+|+.+|.+++.++++.+..  ..++.++..|+++......       ..+..
T Consensus         4 ~gK~alVTGas~GI-G~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~--~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~i   80 (256)
T d1k2wa_           4 DGKTALITGSARGI-GRAFAEAYVREGARVAIADINLEAARATAAEI--GPAACAIALDVTDQASIDRCVAELLDRWGSI   80 (256)
T ss_dssp             TTEEEEEETCSSHH-HHHHHHHHHHTTEEEEEEESCHHHHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh--CCceEEEEeeCCCHHHHHHHHHHHHHHhCCc
Confidence            46678888877664 33333332 23468999999976655554433  4579999999998753211       12578


Q ss_pred             cEEEEcCC
Q 024665          215 DVIFSDVA  222 (264)
Q Consensus       215 D~V~~d~p  222 (264)
                      |+++.++.
T Consensus        81 DilVnnAg   88 (256)
T d1k2wa_          81 DILVNNAA   88 (256)
T ss_dssp             CEEEECCC
T ss_pred             cEEEeecc
Confidence            99998866

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=83.67  E-value=2.6  Score=33.63  Aligned_cols=79  Identities=11%  Similarity=0.114  Sum_probs=49.4

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcC----CCeEEEEcCCCCchhhcc-------c
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKR----TNVIPIIEDARHPAKYRM-------L  210 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~----~nV~~i~~D~~~~~~~~~-------~  210 (264)
                      .+..+|=-|+++|. ...+|+.+ ....+|+.+|.+++.++++.+.....    .++.+++.|+++......       .
T Consensus         4 ~gKvalVTGas~GI-G~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (264)
T d1spxa_           4 AEKVAIITGSSNGI-GRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   82 (264)
T ss_dssp             TTCEEEETTTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            45667777777655 33333332 33568999999976655544443221    269999999988653211       1


Q ss_pred             CCCccEEEEcCC
Q 024665          211 VGMVDVIFSDVA  222 (264)
Q Consensus       211 ~~~fD~V~~d~p  222 (264)
                      .+..|+++.+..
T Consensus        83 ~g~iDilvnnAG   94 (264)
T d1spxa_          83 FGKLDILVNNAG   94 (264)
T ss_dssp             HSCCCEEEECCC
T ss_pred             hCCCCEeecccc
Confidence            257899998854

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=83.47  E-value=3.6  Score=32.88  Aligned_cols=79  Identities=16%  Similarity=0.175  Sum_probs=49.6

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCC-hHHHHHHHHHhhc-CCCeEEEEcCCCCchhhcc-------cCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFS-HRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRM-------LVG  212 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s-~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~-------~~~  212 (264)
                      .+.++|=-|+++|. ...+|..+ ....+|+.++.+ +..++.+.+.... ..++.+++.|+++......       ..+
T Consensus         6 ~gK~alITGas~GI-G~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G   84 (261)
T d1geea_           6 EGKVVVITGSSTGL-GKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFG   84 (261)
T ss_dssp             TTCEEEETTCSSHH-HHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            46778877777764 44444333 234589999987 4444444444333 3478999999998653211       124


Q ss_pred             CccEEEEcCC
Q 024665          213 MVDVIFSDVA  222 (264)
Q Consensus       213 ~fD~V~~d~p  222 (264)
                      .+|+++.++.
T Consensus        85 ~iDiLVnnAG   94 (261)
T d1geea_          85 KLDVMINNAG   94 (261)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEeeccce
Confidence            7899998865

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=83.23  E-value=5.2  Score=28.81  Aligned_cols=75  Identities=20%  Similarity=0.193  Sum_probs=46.3

Q ss_pred             CCEEEEEcccCChHHHHHHHHhCCC-CEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665          144 GARVLYLGAASGTTVSHVSDIVGPN-GVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~~~-g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      ..+||=+||  |..+.++|+.+... -+|+.+|.+..-+++   .+...........+..............|.+++-.|
T Consensus         2 ~K~IliiGa--G~~G~~~a~~L~~~g~~V~v~dr~~~~a~~---l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~   76 (182)
T d1e5qa1           2 TKSVLMLGS--GFVTRPTLDVLTDSGIKVTVACRTLESAKK---LSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIP   76 (182)
T ss_dssp             CCEEEEECC--STTHHHHHHHHHTTTCEEEEEESCHHHHHH---HHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSC
T ss_pred             CCEEEEECC--CHHHHHHHHHHHhCCCEEEEEECChHHHHH---HHhcccccccccccccchhhhHhhhhccceeEeecc
Confidence            357777887  78777777766544 489999999754433   333344555555555443322223457788887666


Q ss_pred             C
Q 024665          223 Q  223 (264)
Q Consensus       223 ~  223 (264)
                      .
T Consensus        77 ~   77 (182)
T d1e5qa1          77 Y   77 (182)
T ss_dssp             G
T ss_pred             c
Confidence            3

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=82.24  E-value=1.9  Score=34.47  Aligned_cols=79  Identities=13%  Similarity=0.140  Sum_probs=48.3

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCC-hHHHHHHHHHh--hcCCCeEEEEcCCCCchhhcc-------cC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFS-HRSGRDLVNMA--KKRTNVIPIIEDARHPAKYRM-------LV  211 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s-~~~~~~l~~~a--~~~~nV~~i~~D~~~~~~~~~-------~~  211 (264)
                      .|.++|=-|+++|. ...+|..+ ....+|+.++.+ +..++++.+..  ....++.++..|+++......       ..
T Consensus         3 ~gK~alITGas~GI-G~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (260)
T d1x1ta1           3 KGKVAVVTGSTSGI-GLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM   81 (260)
T ss_dssp             TTCEEEETTCSSHH-HHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred             CcCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            56778866777665 44443332 234689999987 44333333322  123489999999998653211       12


Q ss_pred             CCccEEEEcCC
Q 024665          212 GMVDVIFSDVA  222 (264)
Q Consensus       212 ~~fD~V~~d~p  222 (264)
                      +..|+++.|+.
T Consensus        82 G~iDiLVnnAG   92 (260)
T d1x1ta1          82 GRIDILVNNAG   92 (260)
T ss_dssp             SCCSEEEECCC
T ss_pred             CCCcEEEeecc
Confidence            57999998865

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.01  E-value=0.99  Score=38.03  Aligned_cols=78  Identities=14%  Similarity=-0.017  Sum_probs=47.2

Q ss_pred             CCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHH-----------------HHHHHh-hcCCCeEEEEcCCCCc
Q 024665          144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGR-----------------DLVNMA-KKRTNVIPIIEDARHP  204 (264)
Q Consensus       144 g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~-----------------~l~~~a-~~~~nV~~i~~D~~~~  204 (264)
                      |++||=.|+ +|.+..+|+..+- ..-.|+++|...+...                 .+.... ....+++++++|+++.
T Consensus         1 g~kILVTGa-tGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~   79 (393)
T d1i24a_           1 GSRVMVIGG-DGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDF   79 (393)
T ss_dssp             -CEEEEETT-TSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSH
T ss_pred             CCEEEEECC-CcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCCH
Confidence            578887776 9999999877653 3358999994321100                 111111 1234899999999986


Q ss_pred             hhhcccC--CCccEEEEcCC
Q 024665          205 AKYRMLV--GMVDVIFSDVA  222 (264)
Q Consensus       205 ~~~~~~~--~~fD~V~~d~p  222 (264)
                      .......  ..+|+|+.-++
T Consensus        80 ~~l~~~~~~~~~d~ViHlAa   99 (393)
T d1i24a_          80 EFLAESFKSFEPDSVVHFGE   99 (393)
T ss_dssp             HHHHHHHHHHCCSEEEECCS
T ss_pred             HHHHHHHHhhcchheecccc
Confidence            5432221  26799985443

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=81.89  E-value=2.6  Score=33.56  Aligned_cols=79  Identities=20%  Similarity=0.226  Sum_probs=48.2

Q ss_pred             CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEe-CChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhc-------ccCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVE-FSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYR-------MLVG  212 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD-~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~-------~~~~  212 (264)
                      .|++||=.|+ ++.+...+|..+- ...+|+..+ .+++.++++.+.... ..++.++..|+++.....       ...+
T Consensus         5 ~GK~alITGa-s~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g   83 (259)
T d1ja9a_           5 AGKVALTTGA-GRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFG   83 (259)
T ss_dssp             TTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCC-CCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHHcC
Confidence            5788886665 5555555554443 234677654 455544444444333 348999999999864221       1124


Q ss_pred             CccEEEEcCC
Q 024665          213 MVDVIFSDVA  222 (264)
Q Consensus       213 ~fD~V~~d~p  222 (264)
                      ..|+++.++.
T Consensus        84 ~idilinnag   93 (259)
T d1ja9a_          84 GLDFVMSNSG   93 (259)
T ss_dssp             CEEEEECCCC
T ss_pred             CCcEEEeccc
Confidence            7899998766

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=80.63  E-value=0.82  Score=34.36  Aligned_cols=41  Identities=29%  Similarity=0.338  Sum_probs=30.7

Q ss_pred             cccCCCCCCEEEEEcc--cCChHHHHHHHHhCCCCEEEEEeCChH
Q 024665          137 DNIWIKPGARVLYLGA--ASGTTVSHVSDIVGPNGVVYAVEFSHR  179 (264)
Q Consensus       137 ~~~~l~~g~~VLDlG~--G~G~~s~~la~~~~~~g~V~avD~s~~  179 (264)
                      .+..++|+++||=.|+  +.|...+.+|...+  .+|++++.+++
T Consensus        21 ~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G--~~vi~~~~~~~   63 (171)
T d1iz0a2          21 KRAQARPGEKVLVQAAAGALGTAAVQVARAMG--LRVLAAASRPE   63 (171)
T ss_dssp             HHTTCCTTCEEEESSTTBHHHHHHHHHHHHTT--CEEEEEESSGG
T ss_pred             HHhCCCCCCEEEEEeccccchhhhhhhhcccc--ccccccccccc
Confidence            3346899999999885  33567777888754  58999998853

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.62  E-value=1.1  Score=34.36  Aligned_cols=72  Identities=11%  Similarity=0.006  Sum_probs=49.3

Q ss_pred             CEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665          145 ARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA  222 (264)
Q Consensus       145 ~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p  222 (264)
                      ++|| |--|||.+..++++.+ ...-+|+++..++.-.    . .....+++++.+|+.+..........+|+|++-..
T Consensus         4 kkIl-V~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~----~-~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g   76 (205)
T d1hdoa_           4 KKIA-IFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRL----P-SEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLG   76 (205)
T ss_dssp             CEEE-EESTTSHHHHHHHHHHHHTTCEEEEEESCGGGS----C-SSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CEEE-EECCCCHHHHHHHHHHHHCcCEEEEEEcChhhc----c-cccccccccccccccchhhHHHHhcCCCEEEEEec
Confidence            5788 6667888888877543 3345799999885321    1 11234799999999997755434467899997654

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=80.45  E-value=3  Score=33.15  Aligned_cols=79  Identities=10%  Similarity=0.076  Sum_probs=48.7

Q ss_pred             CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHh-h-cCCCeEEEEcCCCCchhhc-------ccCC
Q 024665          143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMA-K-KRTNVIPIIEDARHPAKYR-------MLVG  212 (264)
Q Consensus       143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a-~-~~~nV~~i~~D~~~~~~~~-------~~~~  212 (264)
                      .+.+||=-|+++|. ...+|+.+ ....+|+.+|.+++.+.+..+.. . ...++.+++.|+++.....       ...+
T Consensus         8 ~gK~alITGas~GI-G~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   86 (260)
T d1h5qa_           8 VNKTIIVTGGNRGI-GLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLG   86 (260)
T ss_dssp             TTEEEEEETTTSHH-HHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            46778888866654 44444333 23468999999853332333222 2 2347999999999865321       1235


Q ss_pred             CccEEEEcCC
Q 024665          213 MVDVIFSDVA  222 (264)
Q Consensus       213 ~fD~V~~d~p  222 (264)
                      ..|+++.+..
T Consensus        87 ~iDilVnnAg   96 (260)
T d1h5qa_          87 PISGLIANAG   96 (260)
T ss_dssp             SEEEEEECCC
T ss_pred             CCcEeccccc
Confidence            7999998765

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.15  E-value=0.67  Score=38.62  Aligned_cols=77  Identities=19%  Similarity=0.215  Sum_probs=51.9

Q ss_pred             CCCCCCEEEEEcccCChHHHHHHHHhCC-CCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEE
Q 024665          140 WIKPGARVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIF  218 (264)
Q Consensus       140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~-~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~  218 (264)
                      ++...++||=.| |+|.+..+|+..+-. .-+|+++|.....     .......++++...|..+..........+|.|+
T Consensus        11 ~~~~nMKILVTG-gsGfIGs~lv~~L~~~g~~V~~~d~~~~~-----~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi   84 (363)
T d2c5aa1          11 WPSENLKISITG-AGGFIASHIARRLKHEGHYVIASDWKKNE-----HMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVF   84 (363)
T ss_dssp             CTTSCCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESSCCS-----SSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEE
T ss_pred             CCCCCCEEEEEC-CCCHHHHHHHHHHHHCcCEEEEEeCCCcc-----chhhhcccCcEEEeechhHHHHHHHhhcCCeEe
Confidence            466789999555 899999988766532 3489999976311     111122367889999988765433446799988


Q ss_pred             EcCC
Q 024665          219 SDVA  222 (264)
Q Consensus       219 ~d~p  222 (264)
                      .-..
T Consensus        85 h~a~   88 (363)
T d2c5aa1          85 NLAA   88 (363)
T ss_dssp             ECCC
T ss_pred             eccc
Confidence            6553