Citrus Sinensis ID: 024666

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260----
Protein Sequence
MSIFIVKMRLLLLSFLMINALLVMHLQAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP
Secondary Structure (PSIPRED)
ccEEEEccEEEEEEEEEEccEEEEEEEEEEEEEEEEccEEEEEEEEEEEEccEEEEEEEEccccEEEEEEEcccccccEEEEEEEEcccccccccccccccEEEEEEEEEcccccEEEEEEEEEccEEEEEEEEEEEccccccccEEEEEEEEcccEEEEEEEcccccEEEEEEEEEEcccccEEEEEEEEEEcccccEEEEEEEEEEcccccEEEEEEccccEEEEEEEEEEcccEEEEEEEEEEccccccccEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHccEEEEEEEEEcccccccccEEEEEEEEEEccccEEEEEEEccccccEEEEEEcccccccEEEEEEEcccccccEEEEEEEcccEEEEEEEccccccEEEEEEEEccccEEEEEEEEEEcccccccEcEEEEEEccccEEEEEEEcccccEEEEEEEEEEcccccEEEEEEEEEEccccccEEEEEEEEEEccccEEEEEEccccEEEEEEEEEEcccEEEEEEEEEccccccccccEEEEEEEcc
Coil and Loop (DISEMBL)
MSIFIVKMRLLLLSFLMINALLVMHLQAItssgvkkgELFLADVSTQlknknittdvkvdtnsnlfttitvdepapglksifsfivpdqrsgkveLQYQHeyagistgigftanpivnfsgvvgnnsvalgtdlsfdtatgnftkcnaglsytHTDLIASltlndkgdtlnasYYHIVSPLTNTAVGAElthsfssnentltigtqhaldpltsVKARVNNYGRASAliqhewrpkslftisgEVDTRAIEKSAKIGLALALKP
Flexible Loop (DISEMBL)
MSIFIVKMRLLLLSFLMINALLVMHLQAITSSGVKKGELFLADVStqlknknittdvkvdtnsNLFTtitvdepapglKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRAsaliqhewrpkslFTISGEVDTRAIEKSAKIGLALALKP
Low Complexity Region (SEG)
MSIFIVKMRLLLLSFLMINALLVMHLQAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIvnfsgvvgnnsvALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP
Disordered region (IsUnstruct)
**IFIVKMRLLLLSFLMINALLVMHLQAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGL******
Disordered Region (DISOPRED)
*SIFIVKMRLLLLSFLMINALLVMHLQAI**********FLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP
Disordered Region (DISEMBL)
MSIFIVKMRLLLLSFLMINALLVMHLQAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP
Disordered Region (DISPRO)
MSIFIVKMRLLLLSFLMINALLVMHLQAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP
Transmembrane Helix (TMHMM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSIFIVKMRLLLLSFLMINALLVMHLQAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	264	2.2.26 [Sep-21-2011]
P42056	276	Mitochondrial outer membr	N/A	no	0.897	0.858	0.873	1e-121
P42055	276	Mitochondrial outer membr	N/A	no	0.893	0.855	0.783	1e-109
P42054	276	Outer plastidial membrane	N/A	no	0.897	0.858	0.734	1e-101
Q9SRH5	276	Mitochondrial outer membr	yes	no	0.897	0.858	0.734	5e-99
Q9SMX3	274	Mitochondrial outer membr	no	no	0.890	0.857	0.666	9e-91
Q6K548	274	Mitochondrial outer membr	yes	no	0.893	0.861	0.670	1e-90
P46274	275	Mitochondrial outer membr	N/A	no	0.893	0.858	0.672	2e-88
Q7F4F8	275	Mitochondrial outer membr	no	no	0.890	0.854	0.652	1e-86
P42057	277	Outer plastidial membrane	N/A	no	0.893	0.851	0.611	1e-81
Q6L5I5	280	Mitochondrial outer membr	no	no	0.890	0.839	0.617	3e-77

>sp|P42056|VDAC2_SOLTU Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2

 Score =  434 bits (1115), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 207/237 (87%), Positives = 228/237 (96%)

Query: 28  AITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVP 87
           AIT+SG+KKGELFLADVSTQLKNKNITTDVKVDTNSN++TTITVDEPAPGLK+IFSF+VP
Sbjct: 40  AITASGLKKGELFLADVSTQLKNKNITTDVKVDTNSNVYTTITVDEPAPGLKTIFSFVVP 99

Query: 88  DQRSGKVELQYQHEYAGISTGIGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCN 147
           DQ+SGKVELQY HEYAGI+T IG TA+P+VNFSGV GNN+VALGTDLSFDTATGNFTKCN
Sbjct: 100 DQKSGKVELQYLHEYAGINTSIGLTASPLVNFSGVAGNNTVALGTDLSFDTATGNFTKCN 159

Query: 148 AGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQH 207
           AGLS++ +DLIASL LNDKGDT++ASYYH V P+TNTAVGAELTHSFSSNENTLTIGTQH
Sbjct: 160 AGLSFSSSDLIASLALNDKGDTVSASYYHTVKPVTNTAVGAELTHSFSSNENTLTIGTQH 219

Query: 208 ALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP 264
            LDPLT+VKARVN+YG+ASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLA+ALKP
Sbjct: 220 LLDPLTTVKARVNSYGKASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLAVALKP 276

Forms a channel through the cell membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.
Solanum tuberosum (taxid: 4113)

>sp|P42055|VDAC1_SOLTU Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2

 Score =  395 bits (1014), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 185/236 (78%), Positives = 215/236 (91%)

Query: 29  ITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPD 88
           ITSSG KKG+LFLADV+TQLKNKN+TTD+KVDTNSNLFTTITVDE APGLK+I SF VPD
Sbjct: 41  ITSSGSKKGDLFLADVNTQLKNKNVTTDIKVDTNSNLFTTITVDEAAPGLKTILSFRVPD 100

Query: 89  QRSGKVELQYQHEYAGISTGIGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCNA 148
           QRSGK+E+QY H+YAGI T +G TANPIVNFSGVVG N +ALGTD+SFDT TG+FTKCNA
Sbjct: 101 QRSGKLEVQYLHDYAGICTSVGLTANPIVNFSGVVGTNIIALGTDVSFDTKTGDFTKCNA 160

Query: 149 GLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHA 208
           GLS+T+ DL+ASL LN+KGD L ASYYH VSPLT+TAVGAE+ HSFS+NEN +T+GTQH 
Sbjct: 161 GLSFTNADLVASLNLNNKGDNLTASYYHTVSPLTSTAVGAEVNHSFSTNENIITVGTQHR 220

Query: 209 LDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP 264
           LDPLTSVKAR+NN+G+ASAL+QHEWRPKSLFT+SGEVDT++++K AK GLALALKP
Sbjct: 221 LDPLTSVKARINNFGKASALLQHEWRPKSLFTVSGEVDTKSVDKGAKFGLALALKP 276

Forms a channel through the cell membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Solanum tuberosum (taxid: 4113)

>sp|P42054|VDAC_PEA Outer plastidial membrane protein porin OS=Pisum sativum GN=POR1 PE=1 SV=2

 Score =  367 bits (941), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 174/237 (73%), Positives = 203/237 (85%)

Query: 28  AITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVP 87
           AITSSG KKGELFL DV+TQLKNKNITTD+KVDTNSNLFTTITV+EPAPG+K+I SF VP
Sbjct: 40  AITSSGTKKGELFLGDVNTQLKNKNITTDIKVDTNSNLFTTITVNEPAPGVKAILSFKVP 99

Query: 88  DQRSGKVELQYQHEYAGISTGIGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCN 147
           +Q SGKVELQY HEYAGIS+ +G  ANPIVNFS V+G N++A G D+SFDT  G  TK N
Sbjct: 100 EQTSGKVELQYLHEYAGISSSVGLKANPIVNFSSVIGTNALAFGADISFDTKLGELTKSN 159

Query: 148 AGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQH 207
           A +++   DLI SLTLN+KGD L+ASYYH ++PL+NTAVG +++H FS+ ENT T+GTQH
Sbjct: 160 AAVNFVKDDLIGSLTLNEKGDLLSASYYHAINPLSNTAVGVDISHRFSTKENTFTLGTQH 219

Query: 208 ALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP 264
           ALDPLT+VK RV N G+ASALIQHEWRPKSL TIS EVDT+AIEKSAKIGL+LALKP
Sbjct: 220 ALDPLTTVKGRVTNSGKASALIQHEWRPKSLITISSEVDTKAIEKSAKIGLSLALKP 276

Forms a channel through the cell membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Pisum sativum (taxid: 3888)

>sp|Q9SRH5|VDAC1_ARATH Mitochondrial outer membrane protein porin 1 OS=Arabidopsis thaliana GN=VDAC1 PE=1 SV=3

 Score =  360 bits (924), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 174/237 (73%), Positives = 204/237 (86%)

Query: 28  AITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVP 87
           AITS+G KKG+L L DV+ Q + KNITTD+KV T+S    T TVDE APGL+SIFSF VP
Sbjct: 40  AITSTGTKKGDLLLGDVAFQSRRKNITTDLKVCTDSTFLITATVDEAAPGLRSIFSFKVP 99

Query: 88  DQRSGKVELQYQHEYAGISTGIGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCN 147
           DQ SGKVELQY HEYAGIST +G T NP VNFSGV+G+N +A+GTD+SFDT +GNFTK N
Sbjct: 100 DQNSGKVELQYLHEYAGISTSMGLTQNPTVNFSGVIGSNVLAVGTDVSFDTKSGNFTKIN 159

Query: 148 AGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQH 207
           AGLS+T  DLIASLT+NDKGD LNASYYHIV+PL NTAVGAE++H  SS ++T+T+GTQH
Sbjct: 160 AGLSFTKEDLIASLTVNDKGDLLNASYYHIVNPLFNTAVGAEVSHKLSSKDSTITVGTQH 219

Query: 208 ALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP 264
           +LDPLTSVKARVN+ G ASALIQHEW+PKS FTISGEVDT++I+KSAK+GLALALKP
Sbjct: 220 SLDPLTSVKARVNSAGIASALIQHEWKPKSFFTISGEVDTKSIDKSAKVGLALALKP 276

Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective (By similarity). Involved in plant development at reproductive stage, is important for pollen development and may regulate hydrogen peroxide generation during disease resistance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SMX3|VDAC3_ARATH Mitochondrial outer membrane protein porin 3 OS=Arabidopsis thaliana GN=VDAC3 PE=1 SV=3

 Score =  333 bits (853), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 158/237 (66%), Positives = 196/237 (82%), Gaps = 2/237 (0%)

Query: 28  AITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVP 87
           AIT++G  KG LFL DV+TQ+KN N T DVKV T+S+L TT+T DEPAPGLK I    +P
Sbjct: 40  AITTTGTNKGSLFLGDVATQVKNNNFTADVKVSTDSSLLTTLTFDEPAPGLKVIVQAKLP 99

Query: 88  DQRSGKVELQYQHEYAGISTGIGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCN 147
           D +SGK E+QY H+YAGIST +GFTA PIVNFSGVVG N ++LGTD++++T +GNF   N
Sbjct: 100 DHKSGKAEVQYFHDYAGISTSVGFTATPIVNFSGVVGTNGLSLGTDVAYNTESGNFKHFN 159

Query: 148 AGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQH 207
           AG ++T  DL ASL LNDKG+ LNASYY IVSP  +T VGAE++H+F++ EN +T+GTQH
Sbjct: 160 AGFNFTKDDLTASLILNDKGEKLNASYYQIVSP--STVVGAEISHNFTTKENAITVGTQH 217

Query: 208 ALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP 264
           ALDPLT+VKARVNN G A+ALIQHEWRPKS FT+SGEVD++AI+KSAK+G+ALALKP
Sbjct: 218 ALDPLTTVKARVNNAGVANALIQHEWRPKSFFTVSGEVDSKAIDKSAKVGIALALKP 274

Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6K548|VDAC1_ORYSJ Mitochondrial outer membrane protein porin 1 OS=Oryza sativa subsp. japonica GN=VDAC1 PE=1 SV=3

 Score =  333 bits (853), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 159/237 (67%), Positives = 197/237 (83%), Gaps = 1/237 (0%)

Query: 28  AITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVP 87
           AIT++  KK +L   ++ +Q+KNKNIT DVK +++SN+ TT+TVDE  PGLKSI SF VP
Sbjct: 39  AITATSTKKADLIFGEIQSQIKNKNITVDVKANSDSNVVTTVTVDELTPGLKSILSFAVP 98

Query: 88  DQRSGKVELQYQHEYAGISTGIGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCN 147
           DQRSGK ELQY H+YAG+S  IG TA+P+VN S V G  ++A+G D+S DTATGN TK N
Sbjct: 99  DQRSGKFELQYSHDYAGVSASIGLTASPVVNLSSVFGTKALAVGADVSLDTATGNLTKYN 158

Query: 148 AGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQH 207
           AGLS+++ DLIASL LN+KGD+L ASYYHIV+  + TAVGAELTHSFSSNEN+LT GTQH
Sbjct: 159 AGLSFSNDDLIASLNLNNKGDSLTASYYHIVNH-SATAVGAELTHSFSSNENSLTFGTQH 217

Query: 208 ALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP 264
            LDPLT VKAR NN G+ASAL+QHEWRPKS++TIS EVDT+AI+KS+K+G+A+ALKP
Sbjct: 218 TLDPLTVVKARFNNSGKASALLQHEWRPKSVWTISAEVDTKAIDKSSKVGIAVALKP 274

Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P46274|VDAC1_WHEAT Mitochondrial outer membrane porin OS=Triticum aestivum GN=VDAC1 PE=2 SV=1

 Score =  325 bits (833), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 160/238 (67%), Positives = 195/238 (81%), Gaps = 2/238 (0%)

Query: 28  AITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDE-PAPGLKSIFSFIV 86
           AIT++  KK +L + ++ +Q+KNKNIT DVK ++ SN+ TTIT D+  APGLK+I SF V
Sbjct: 39  AITATSTKKADLTVGEIQSQIKNKNITVDVKANSASNVITTITADDLAAPGLKTILSFAV 98

Query: 87  PDQRSGKVELQYQHEYAGISTGIGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKC 146
           PDQ+SGKVELQY H+YAGI+  IG TANP+VN SG  G +++A+G D+S DTAT NF K 
Sbjct: 99  PDQKSGKVELQYLHDYAGINASIGLTANPVVNLSGAFGTSALAVGADVSLDTATKNFAKY 158

Query: 147 NAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQ 206
           NA LSYT+ DLIASL LN+KGD+L ASYYHIV   + TAVGAELTHSFSSNEN+LT GTQ
Sbjct: 159 NAALSYTNQDLIASLNLNNKGDSLTASYYHIVEK-SGTAVGAELTHSFSSNENSLTFGTQ 217

Query: 207 HALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP 264
           H LDPLT VKAR+NN G+ASALIQHE+ PKSL TIS EVDT+AIEKS+K+G+A+ALKP
Sbjct: 218 HTLDPLTLVKARINNSGKASALIQHEFMPKSLCTISAEVDTKAIEKSSKVGIAIALKP 275

Forms a channel through the cell membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Triticum aestivum (taxid: 4565)

>sp|Q7F4F8|VDAC3_ORYSJ Mitochondrial outer membrane protein porin 3 OS=Oryza sativa subsp. japonica GN=VDAC3 PE=2 SV=1

 Score =  319 bits (817), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 154/236 (65%), Positives = 190/236 (80%), Gaps = 1/236 (0%)

Query: 29  ITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDE-PAPGLKSIFSFIVP 87
           IT++G +K E    ++ TQLKNK +T DVK ++ S+L TT+TVDE   PGLKSI S +VP
Sbjct: 39  ITAAGTRKNESVFGELQTQLKNKKLTVDVKANSESDLLTTVTVDEFGTPGLKSILSLVVP 98

Query: 88  DQRSGKVELQYQHEYAGISTGIGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCN 147
           DQRSGK+ELQY HEYAGI+  +G  +NP+VN SGV G+  +++G D++FDTAT NFTK N
Sbjct: 99  DQRSGKLELQYLHEYAGINASVGLNSNPMVNLSGVFGSKELSVGVDVAFDTATSNFTKYN 158

Query: 148 AGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQH 207
           A LS T++DLIASL LN+ GDTL ASYYH+V   +NTAVGAEL+HSFS NE+TL  G+QH
Sbjct: 159 AALSLTNSDLIASLHLNNHGDTLIASYYHLVKHHSNTAVGAELSHSFSRNESTLIFGSQH 218

Query: 208 ALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALK 263
           +LDP T+VKAR NNYG ASAL+QHEWRPKSL TISGEVDT+AIEKS K+GL+L LK
Sbjct: 219 SLDPHTTVKARFNNYGMASALVQHEWRPKSLITISGEVDTKAIEKSTKVGLSLVLK 274

Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P42057|VDAC_MAIZE Outer plastidial membrane protein porin OS=Zea mays GN=POR1 PE=2 SV=1

 Score =  302 bits (774), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 145/237 (61%), Positives = 184/237 (77%), Gaps = 1/237 (0%)

Query: 28  AITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDE-PAPGLKSIFSFIV 86
           AIT++G +K E    ++ TQ+KNK +T DVK ++ S+L TTITVDE   PGLKSI + +V
Sbjct: 40  AITAAGTRKNESIFGELHTQIKNKKLTVDVKANSESDLLTTITVDEFGTPGLKSIINLVV 99

Query: 87  PDQRSGKVELQYQHEYAGISTGIGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKC 146
           PDQRSGK+E QY HEYAG++  +G  +NP+VN SG  G+ ++++G D+SFDTAT +FTK 
Sbjct: 100 PDQRSGKLEFQYLHEYAGVNASVGLNSNPMVNLSGAFGSKALSVGVDVSFDTATSDFTKY 159

Query: 147 NAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQ 206
           NA LS T  DLIASL LN+ GDTL ASYYH+V   + TAVGAEL+HS S NE+TL  G+Q
Sbjct: 160 NAALSLTSPDLIASLHLNNHGDTLVASYYHLVKNHSGTAVGAELSHSMSRNESTLIFGSQ 219

Query: 207 HALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALK 263
           H+LDP T++K R NNYG ASAL+QHEWRPKS  TISG+VDT+AIEKS K+GL+L LK
Sbjct: 220 HSLDPHTTIKTRFNNYGMASALVQHEWRPKSFVTISGDVDTKAIEKSTKVGLSLVLK 276

Forms a channel through the cell membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Zea mays (taxid: 4577)

>sp|Q6L5I5|VDAC2_ORYSJ Mitochondrial outer membrane protein porin 2 OS=Oryza sativa subsp. japonica GN=VDAC2 PE=2 SV=1

 Score =  288 bits (737), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 147/238 (61%), Positives = 183/238 (76%), Gaps = 3/238 (1%)

Query: 28  AITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITV-DEPAPGLKSIFSFIV 86
           AIT +G KK E   +++ +Q+KN N++ DVK  ++S L TT TV D   PGLK I S   
Sbjct: 45  AITVAGTKKNESIFSEIQSQVKNNNVSVDVKATSDSKLITTFTVHDLGTPGLKGILSIPF 104

Query: 87  PDQRSGKVELQYQHEYAGISTGIGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKC 146
           P Q+S K E+QY H +AG++  +G  ANP+V+FSGV G  + A+GTD++FDTATG+FTK 
Sbjct: 105 PYQKSAKAEVQYLHPHAGLNAIVGLNANPLVSFSGVFGTGAFAVGTDVAFDTATGDFTKY 164

Query: 147 NAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQ 206
           NAGLS+T  DL A+L LN+KGD+L ASYYH VS    +AVGAEL HSFSSNENTLT GTQ
Sbjct: 165 NAGLSHTTPDLTAALLLNNKGDSLAASYYHKVSK--TSAVGAELAHSFSSNENTLTFGTQ 222

Query: 207 HALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP 264
           HALD LT+VKAR NN+G ASALIQHE+RPKSL TIS EVDT+AI+KS+K+GL+L LKP
Sbjct: 223 HALDELTTVKARFNNFGMASALIQHEFRPKSLVTISTEVDTKAIDKSSKVGLSLVLKP 280

Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	264
224102711	276	porin/voltage-dependent anion-selective	0.897	0.858	0.881	1e-120
5031279	276	porin [Prunus armeniaca]	0.897	0.858	0.877	1e-120
225424908	276	PREDICTED: mitochondrial outer membrane	0.897	0.858	0.881	1e-119
1172556	276	RecName: Full=Mitochondrial outer membra	0.897	0.858	0.873	1e-119
255558216	276	voltage-dependent anion-selective channe	0.897	0.858	0.873	1e-119
161788874	276	voltage-dependent anion channel [Nicotia	0.897	0.858	0.873	1e-119
515358	276	36kDa porin I [Solanum tuberosum]	0.897	0.858	0.869	1e-119
449458029	276	PREDICTED: mitochondrial outer membrane	0.897	0.858	0.864	1e-118
224102515	276	porin/voltage-dependent anion-selective	0.897	0.858	0.877	1e-118
1256259	276	voltage-dependent anion channel protein	0.897	0.858	0.869	1e-116

>gi|224102711|ref|XP_002312786.1| porin/voltage-dependent anion-selective channel protein [Populus trichocarpa] gi|118481103|gb|ABK92505.1| unknown [Populus trichocarpa] gi|222852606|gb|EEE90153.1| porin/voltage-dependent anion-selective channel protein [Populus trichocarpa]

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 209/237 (88%), Positives = 229/237 (96%)

Query: 28  AITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVP 87
           AITS+G+KKGELFLAD+S+QLKNKNITTDVKVDTNSNL TTIT+DEPAPGLK+IFSF VP
Sbjct: 40  AITSTGIKKGELFLADISSQLKNKNITTDVKVDTNSNLLTTITIDEPAPGLKTIFSFKVP 99

Query: 88  DQRSGKVELQYQHEYAGISTGIGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCN 147
           DQRSGKVELQYQHEYAGIST +G TANPIVNFSGVVG+N VALGTDLSFDTATGNFTKCN
Sbjct: 100 DQRSGKVELQYQHEYAGISTSLGLTANPIVNFSGVVGSNVVALGTDLSFDTATGNFTKCN 159

Query: 148 AGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQH 207
           AGLSYT++DLIASLT+NDKGDTL+ASYYH VSPLT+TAVGAELTHSFSSNEN LTIGTQH
Sbjct: 160 AGLSYTNSDLIASLTVNDKGDTLSASYYHTVSPLTSTAVGAELTHSFSSNENILTIGTQH 219

Query: 208 ALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP 264
           ALDPLT+VKAR+NNYG+ SALIQ+EWRPKSLFTISGEVDT+AIEKSAK+GLAL+LKP
Sbjct: 220 ALDPLTTVKARLNNYGKVSALIQNEWRPKSLFTISGEVDTKAIEKSAKVGLALSLKP 276

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5031279|gb|AAD38145.1|AF139498_1 porin [Prunus armeniaca]

 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/237 (87%), Positives = 226/237 (95%)

Query: 28  AITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVP 87
           AI+S+G++KG+L+L DVSTQLKNKNITTDVKVDT+SNL TTIT+DEPAPGLK+IFSFIVP
Sbjct: 40  AISSTGIRKGDLYLGDVSTQLKNKNITTDVKVDTDSNLRTTITIDEPAPGLKAIFSFIVP 99

Query: 88  DQRSGKVELQYQHEYAGISTGIGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCN 147
           DQRSGKVELQYQHEYAGIST IG TANPIVNFSGVVGNN ++LGTDLSFDTA+GNFTKCN
Sbjct: 100 DQRSGKVELQYQHEYAGISTSIGLTANPIVNFSGVVGNNLLSLGTDLSFDTASGNFTKCN 159

Query: 148 AGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQH 207
           AGL++THTDLIASL LNDK DT+ ASYYH VSPLTNTAVGAEL+HSFSSNEN+LTIGTQH
Sbjct: 160 AGLNFTHTDLIASLILNDKADTVTASYYHTVSPLTNTAVGAELSHSFSSNENSLTIGTQH 219

Query: 208 ALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP 264
           ALDPLT+VK RVNNYGRASALIQHEWRPKS FTISGEVDTRAIEKSAKIGLALALKP
Sbjct: 220 ALDPLTTVKGRVNNYGRASALIQHEWRPKSFFTISGEVDTRAIEKSAKIGLALALKP 276

Source: Prunus armeniaca

Species: Prunus armeniaca

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424908|ref|XP_002276636.1| PREDICTED: mitochondrial outer membrane protein porin of 36 kDa isoform 1 [Vitis vinifera]

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 209/237 (88%), Positives = 224/237 (94%)

Query: 28  AITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVP 87
           AITSSG KKGELF+ADV+TQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLK+IFSFI+P
Sbjct: 40  AITSSGTKKGELFIADVNTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKTIFSFIIP 99

Query: 88  DQRSGKVELQYQHEYAGISTGIGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCN 147
           DQRSGKVELQY HEYAGIST IG TANPIVNFSGVVGNN+++LGTDLSFDTATGNFTKCN
Sbjct: 100 DQRSGKVELQYLHEYAGISTSIGLTANPIVNFSGVVGNNTLSLGTDLSFDTATGNFTKCN 159

Query: 148 AGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQH 207
           AGL +++ DLIA+LTLNDKGDTLNASYYH VSPLTNTAVGAEL+H FS+NENTLTIGTQH
Sbjct: 160 AGLGFSNADLIAALTLNDKGDTLNASYYHTVSPLTNTAVGAELSHCFSTNENTLTIGTQH 219

Query: 208 ALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP 264
           ALDPLT VKAR NN G+ SALIQHEWRPKSLFTISGEVD RA+EKSAKIGLALALKP
Sbjct: 220 ALDPLTKVKARANNSGKVSALIQHEWRPKSLFTISGEVDARAVEKSAKIGLALALKP 276

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1172556|sp|P42056.2|VDAC2_SOLTU RecName: Full=Mitochondrial outer membrane protein porin of 36 kDa; AltName: Full=POM 36; AltName: Full=Voltage-dependent anion-selective channel protein; Short=VDAC gi|515360|emb|CAA56600.1| 36kDA porin II [Solanum tuberosum]

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 207/237 (87%), Positives = 228/237 (96%)

Query: 28  AITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVP 87
           AIT+SG+KKGELFLADVSTQLKNKNITTDVKVDTNSN++TTITVDEPAPGLK+IFSF+VP
Sbjct: 40  AITASGLKKGELFLADVSTQLKNKNITTDVKVDTNSNVYTTITVDEPAPGLKTIFSFVVP 99

Query: 88  DQRSGKVELQYQHEYAGISTGIGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCN 147
           DQ+SGKVELQY HEYAGI+T IG TA+P+VNFSGV GNN+VALGTDLSFDTATGNFTKCN
Sbjct: 100 DQKSGKVELQYLHEYAGINTSIGLTASPLVNFSGVAGNNTVALGTDLSFDTATGNFTKCN 159

Query: 148 AGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQH 207
           AGLS++ +DLIASL LNDKGDT++ASYYH V P+TNTAVGAELTHSFSSNENTLTIGTQH
Sbjct: 160 AGLSFSSSDLIASLALNDKGDTVSASYYHTVKPVTNTAVGAELTHSFSSNENTLTIGTQH 219

Query: 208 ALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP 264
            LDPLT+VKARVN+YG+ASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLA+ALKP
Sbjct: 220 LLDPLTTVKARVNSYGKASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLAVALKP 276

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558216|ref|XP_002520135.1| voltage-dependent anion-selective channel, putative [Ricinus communis] gi|223540627|gb|EEF42190.1| voltage-dependent anion-selective channel, putative [Ricinus communis]

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 207/237 (87%), Positives = 230/237 (97%)

Query: 28  AITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVP 87
           AITS+G+KKGE++L D+++QLKNKNITTD+KVDT+SN+ TTITVDEPAPGLK+IFSF +P
Sbjct: 40  AITSTGIKKGEIYLGDITSQLKNKNITTDIKVDTSSNVSTTITVDEPAPGLKTIFSFKIP 99

Query: 88  DQRSGKVELQYQHEYAGISTGIGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCN 147
           DQRSGKVELQYQHE+AGIST IG TANPIVNFSGV+G+++VALGTDLSFDTA+GNFTK N
Sbjct: 100 DQRSGKVELQYQHEHAGISTSIGLTANPIVNFSGVIGSSAVALGTDLSFDTASGNFTKLN 159

Query: 148 AGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQH 207
           AGLSY++TDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLT GTQH
Sbjct: 160 AGLSYSNTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTFGTQH 219

Query: 208 ALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP 264
           ALDPLT+VKARVN+YG+ASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP
Sbjct: 220 ALDPLTTVKARVNSYGKASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP 276

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|161788874|dbj|BAF95071.1| voltage-dependent anion channel [Nicotiana tabacum]

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 207/237 (87%), Positives = 228/237 (96%)

Query: 28  AITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVP 87
           AITSSG+KKGELFLADV+TQLKNKN+TTDVKVDTNSN++TTITVDEPAPGLK+I SF++P
Sbjct: 40  AITSSGLKKGELFLADVNTQLKNKNVTTDVKVDTNSNVYTTITVDEPAPGLKTIVSFVLP 99

Query: 88  DQRSGKVELQYQHEYAGISTGIGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCN 147
           DQRSGKVELQY HEYAGISTGIG TA+P+VNFSGV GNN+VALGTDLSFDTA+GNFTKCN
Sbjct: 100 DQRSGKVELQYLHEYAGISTGIGLTASPLVNFSGVAGNNTVALGTDLSFDTASGNFTKCN 159

Query: 148 AGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQH 207
           AGLS++ +DLIASL LNDKGDTL+ASYYH V P+TNTAVGAELTHSFSSNENTLTIGTQH
Sbjct: 160 AGLSFSTSDLIASLALNDKGDTLSASYYHTVKPVTNTAVGAELTHSFSSNENTLTIGTQH 219

Query: 208 ALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP 264
            LDPLT+VKARVN+YG+ASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLA+ALKP
Sbjct: 220 LLDPLTTVKARVNSYGKASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLAVALKP 276

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|515358|emb|CAA56601.1| 36kDa porin I [Solanum tuberosum]

 Score =  432 bits (1110), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 206/237 (86%), Positives = 227/237 (95%)

Query: 28  AITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVP 87
           AIT+SG+KKGELFLADVSTQLKNKNITTDVKVD NSN++TTITVDEPAPGLK+IFSF+VP
Sbjct: 40  AITASGLKKGELFLADVSTQLKNKNITTDVKVDANSNVYTTITVDEPAPGLKTIFSFVVP 99

Query: 88  DQRSGKVELQYQHEYAGISTGIGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCN 147
           DQ+SGKVELQY HEYAGI+T IG TA+P+VNFSGV GNN+VALGTDLSFDTATGNFTKCN
Sbjct: 100 DQKSGKVELQYLHEYAGINTSIGLTASPLVNFSGVAGNNTVALGTDLSFDTATGNFTKCN 159

Query: 148 AGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQH 207
           AGLS++ +DLIASL LNDKGDT++ASYYH V P+TNTAVGAELTHSFSSNENTLTIGTQH
Sbjct: 160 AGLSFSSSDLIASLALNDKGDTVSASYYHTVKPVTNTAVGAELTHSFSSNENTLTIGTQH 219

Query: 208 ALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP 264
            LDPLT+VKARVN+YG+ASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLA+ALKP
Sbjct: 220 LLDPLTTVKARVNSYGKASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLAVALKP 276

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458029|ref|XP_004146750.1| PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Cucumis sativus] gi|449505663|ref|XP_004162535.1| PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Cucumis sativus]

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/237 (86%), Positives = 227/237 (95%)

Query: 28  AITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVP 87
           AI+S+G+KKGE+FLADVSTQLKN NITTDVKVDT+SN+ TT+T+DEPAPGLK+IFSF VP
Sbjct: 40  AISSTGIKKGEIFLADVSTQLKNNNITTDVKVDTHSNVHTTVTIDEPAPGLKTIFSFRVP 99

Query: 88  DQRSGKVELQYQHEYAGISTGIGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCN 147
           DQRSGKVELQYQHEYAGISTGIG TA+PIVNF+GV+GN+ ++LGTDLSFDTA+GN TK N
Sbjct: 100 DQRSGKVELQYQHEYAGISTGIGLTASPIVNFAGVIGNDKLSLGTDLSFDTASGNITKLN 159

Query: 148 AGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQH 207
           AGLSYTH+DLIA+LTLNDKGD L ASYYH+VSPL+NTAVGAEL+HSFSSNENTLTIGTQH
Sbjct: 160 AGLSYTHSDLIAALTLNDKGDALTASYYHLVSPLSNTAVGAELSHSFSSNENTLTIGTQH 219

Query: 208 ALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP 264
           ALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAI+KSAKIGLAL LKP
Sbjct: 220 ALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIDKSAKIGLALVLKP 276

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102515|ref|XP_002312708.1| porin/voltage-dependent anion-selective channel protein [Populus trichocarpa] gi|118484777|gb|ABK94257.1| unknown [Populus trichocarpa] gi|222852528|gb|EEE90075.1| porin/voltage-dependent anion-selective channel protein [Populus trichocarpa]

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 208/237 (87%), Positives = 225/237 (94%)

Query: 28  AITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVP 87
           A+TS+G+KKGELFLADVS QLKNKNITTD+KVDTNSNL TTIT+DEPAPGLK+IFSF VP
Sbjct: 40  ALTSTGIKKGELFLADVSGQLKNKNITTDIKVDTNSNLLTTITIDEPAPGLKTIFSFKVP 99

Query: 88  DQRSGKVELQYQHEYAGISTGIGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCN 147
           DQRSGKVELQYQHEYAGIST +G TANPIVNFSGV+G+N V+LGTDLSFDTATGNFTK N
Sbjct: 100 DQRSGKVELQYQHEYAGISTSLGLTANPIVNFSGVIGSNVVSLGTDLSFDTATGNFTKYN 159

Query: 148 AGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQH 207
           AGLSYT+ DLIASLT+NDKGDTL ASYYH V PLT+TAVGAELT SFSSNENTLTIGTQH
Sbjct: 160 AGLSYTNADLIASLTVNDKGDTLTASYYHTVRPLTSTAVGAELTRSFSSNENTLTIGTQH 219

Query: 208 ALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP 264
           ALDPLT+VKAR+NNYG+ASALIQHEWRPKSLFTISGEVDT+AIEKSAKIGLALALKP
Sbjct: 220 ALDPLTTVKARLNNYGKASALIQHEWRPKSLFTISGEVDTKAIEKSAKIGLALALKP 276

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1256259|gb|AAA96275.1| voltage-dependent anion channel protein [Spinacia oleracea]

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 206/237 (86%), Positives = 222/237 (93%)

Query: 28  AITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVP 87
           AITS+G KKGELFLADVST+L NKNITTDVKVDTNSNLFTTITVDEPAPGLK+IFSF VP
Sbjct: 40  AITSTGTKKGELFLADVSTKLTNKNITTDVKVDTNSNLFTTITVDEPAPGLKAIFSFRVP 99

Query: 88  DQRSGKVELQYQHEYAGISTGIGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCN 147
           DQRSGKVELQY HEYAGIST +G TANPIVNFSGV GN+++ALGTDLSFDTA+GNFTKCN
Sbjct: 100 DQRSGKVELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLALGTDLSFDTASGNFTKCN 159

Query: 148 AGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQH 207
           AGLS+T+ DLIAS+ +NDK D LNASYYHIVSPLTNTAVGAEL+HSFSSNENTL IGTQH
Sbjct: 160 AGLSFTNDDLIASVNVNDKLDILNASYYHIVSPLTNTAVGAELSHSFSSNENTLNIGTQH 219

Query: 208 ALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP 264
           ALDPLTSVKARVNNYG+ASALIQHEWRPKS+ TISGEVDT AIEKSAK+GLAL LKP
Sbjct: 220 ALDPLTSVKARVNNYGKASALIQHEWRPKSIVTISGEVDTSAIEKSAKLGLALVLKP 276

Source: Spinacia oleracea

Species: Spinacia oleracea

Genus: Spinacia

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	264
TAIR|locus:2100252	276	VDAC1 "voltage dependent anion	0.897	0.858	0.700	1e-84
TAIR|locus:2147820	274	VDAC3 "voltage dependent anion	0.890	0.857	0.628	1.3e-77
TAIR|locus:2174517	274	VDAC4 "voltage dependent anion	0.878	0.846	0.410	7.4e-50
TAIR|locus:2097425	226	VDAC5 "voltage dependent anion	0.856	1.0	0.329	3.1e-28
ZFIN|ZDB-GENE-030131-845	283	vdac2 "voltage-dependent anion	0.833	0.777	0.290	2.9e-16
TAIR|locus:2151749	163	AT5G37610 [Arabidopsis thalian	0.594	0.963	0.333	9.8e-16
ZFIN|ZDB-GENE-040426-954	281	zgc:56235 "zgc:56235" [Danio r	0.859	0.807	0.276	1.6e-15
FB|FBgn0004363	282	porin "porin" [Drosophila mela	0.867	0.812	0.259	4.2e-15
UNIPROTKB|F1P0E4	284	VDAC2 "Uncharacterized protein	0.875	0.813	0.274	6.9e-15
UNIPROTKB|Q9I9D1	283	VDAC2 "Uncharacterized protein	0.875	0.816	0.274	6.9e-15

TAIR|locus:2100252 VDAC1 "voltage dependent anion channel 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 848 (303.6 bits), Expect = 1.0e-84, P = 1.0e-84
 Identities = 166/237 (70%), Positives = 193/237 (81%)

Query:    28 AITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVP 87
             AITS+G KKG+L L DV+ Q + KNITTD+KV T+S    T TVDE APGL+SIFSF VP
Sbjct:    40 AITSTGTKKGDLLLGDVAFQSRRKNITTDLKVCTDSTFLITATVDEAAPGLRSIFSFKVP 99

Query:    88 DQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCN 147
             DQ SGKVELQY HEYAGIST +G T NP             A+GTD+SFDT +GNFTK N
Sbjct:   100 DQNSGKVELQYLHEYAGISTSMGLTQNPTVNFSGVIGSNVLAVGTDVSFDTKSGNFTKIN 159

Query:   148 AGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQH 207
             AGLS+T  DLIASLT+NDKGD LNASYYHIV+PL NTAVGAE++H  SS ++T+T+GTQH
Sbjct:   160 AGLSFTKEDLIASLTVNDKGDLLNASYYHIVNPLFNTAVGAEVSHKLSSKDSTITVGTQH 219

Query:   208 ALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP 264
             +LDPLTSVKARVN+ G ASALIQHEW+PKS FTISGEVDT++I+KSAK+GLALALKP
Sbjct:   220 SLDPLTSVKARVNSAGIASALIQHEWKPKSFFTISGEVDTKSIDKSAKVGLALALKP 276

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005741 "mitochondrial outer membrane" evidence=IEA;ISS

GO:0006820 "anion transport" evidence=IEA;ISS

GO:0008308 "voltage-gated anion channel activity" evidence=IEA;ISS;IMP

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009617 "response to bacterium" evidence=IEP

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

TAIR|locus:2147820 VDAC3 "voltage dependent anion channel 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
 Identities = 149/237 (62%), Positives = 186/237 (78%)

Query:    28 AITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVP 87
             AIT++G  KG LFL DV+TQ+KN N T DVKV T+S+L TT+T DEPAPGLK I    +P
Sbjct:    40 AITTTGTNKGSLFLGDVATQVKNNNFTADVKVSTDSSLLTTLTFDEPAPGLKVIVQAKLP 99

Query:    88 DQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCN 147
             D +SGK E+QY H+YAGIST +GFTA PI            +LGTD++++T +GNF   N
Sbjct:   100 DHKSGKAEVQYFHDYAGISTSVGFTATPIVNFSGVVGTNGLSLGTDVAYNTESGNFKHFN 159

Query:   148 AGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQH 207
             AG ++T  DL ASL LNDKG+ LNASYY IVSP  +T VGAE++H+F++ EN +T+GTQH
Sbjct:   160 AGFNFTKDDLTASLILNDKGEKLNASYYQIVSP--STVVGAEISHNFTTKENAITVGTQH 217

Query:   208 ALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP 264
             ALDPLT+VKARVNN G A+ALIQHEWRPKS FT+SGEVD++AI+KSAK+G+ALALKP
Sbjct:   218 ALDPLTTVKARVNNAGVANALIQHEWRPKSFFTVSGEVDSKAIDKSAKVGIALALKP 274

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005741 "mitochondrial outer membrane" evidence=IEA;ISS

GO:0006820 "anion transport" evidence=IEA;ISS

GO:0008308 "voltage-gated anion channel activity" evidence=IEA;ISS;IMP

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP

GO:0009060 "aerobic respiration" evidence=IMP

GO:0009409 "response to cold" evidence=IMP

GO:0010029 "regulation of seed germination" evidence=IMP

TAIR|locus:2174517 VDAC4 "voltage dependent anion channel 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
 Identities = 96/234 (41%), Positives = 150/234 (64%)

Query:    31 SSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQR 90
             ++G+KK + F  D+ST  K +N   D+K+D++S++ T +T+    P  K++ SF +PD +
Sbjct:    43 ATGLKKDDFFFGDISTLYKGQNTIVDLKIDSHSSVSTKVTLKNLLPSAKAVISFKIPDHK 102

Query:    91 SGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGL 150
             SGK+++QY H +A +++ IG    P+             LG ++SFDTA+ + TK NAG+
Sbjct:   103 SGKLDVQYVHPHATLNSSIGLNPTPLLDLSATIGSQNVCLGGEVSFDTASSSLTKYNAGI 162

Query:   151 SYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALD 210
              + +  + A+L L DKG++L A+Y H V+P   T+ GAEL   FS+  N+ T+G+ H++D
Sbjct:   163 GFNNQGVSAALILEDKGESLRATYVHTVNP--TTSFGAELIRRFSNYNNSFTVGSSHSVD 220

Query:   211 PLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP 264
               T VK R +N G+A  ++Q EWRPKS  T S E D++A+  S K+GLALALKP
Sbjct:   221 QFTVVKTRFSNSGKAGMVVQREWRPKSHITFSAEYDSKAVTSSPKLGLALALKP 274

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005741 "mitochondrial outer membrane" evidence=IEA;ISS

GO:0006820 "anion transport" evidence=IEA;ISS

GO:0008308 "voltage-gated anion channel activity" evidence=IEA;ISS;IMP

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP

TAIR|locus:2097425 VDAC5 "voltage dependent anion channel 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 76/231 (32%), Positives = 121/231 (52%)

Query:    34 VKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGK 93
             + KG    AD+    K+  +T D   D   ++ T  +V   A    ++ + ++    +  
Sbjct:     1 MSKGPGLFADIGKYAKDL-LTRDYSTDQKFSISTN-SVSGVALTSTALKNGVL---HAAN 55

Query:    94 VELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYT 153
             V  QY++        I    N                 T   +DT +  FTK N G+S T
Sbjct:    56 VATQYKYRNTFFDVKIDTDFNVKSLVYPMNKFVSIDHNTLTGYDTTSRTFTKYNVGVSVT 115

Query:   154 HTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLT 213
               D   S+ L DKGD++ ASY + +   T +A   E+    S+NE T+T+G  +A+D LT
Sbjct:   116 KPDQCVSIILGDKGDSIKASYVYYLDESTRSATVGEVIRKISTNETTVTVGGLYAVDHLT 175

Query:   214 SVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP 264
             +VKA++N+ G+  AL+QHE  PKS+ TISGE+DT+ ++K  ++GL+L+LKP
Sbjct:   176 NVKAKLNSNGKFGALLQHEGLPKSIVTISGEIDTKTLDKYPRLGLSLSLKP 226

GO:0005739 "mitochondrion" evidence=ISM

GO:0005741 "mitochondrial outer membrane" evidence=IEA;ISS

GO:0006820 "anion transport" evidence=IEA;ISS

GO:0008308 "voltage-gated anion channel activity" evidence=IEA;ISS

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

ZFIN|ZDB-GENE-030131-845 vdac2 "voltage-dependent anion channel 2" [Danio rerio (taxid:7955)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 67/231 (29%), Positives = 99/231 (42%)

Query:    41 LADVSTQLKNKN--ITTDVKVDTNSNLFTTITV-DEPAPGLKSIF-SFIVPD--QRSGKV 94
             +  + T+ K     +T   K +T++ L T I + D+ A GLK  F +   P+  ++SGKV
Sbjct:    55 VGSLETKYKRSEYGLTFTEKWNTDNTLGTEINIEDQIAKGLKLTFDTTFSPNTGKKSGKV 114

Query:    95 ELQYQHEYAGISTGIGFT-ANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYT 153
             +  Y+ E+  +   + F  A P               G  +SFDTA    T+ N  + Y 
Sbjct:   115 KTAYKREFVNLGCDVDFDFAGPTIHGAAVVGYEGWLAGYQMSFDTAKSKMTQNNFAVGYK 174

Query:   154 HTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLT 213
               D      +ND G     S Y  VS    TAV   L  +  SN     I  ++ LD   
Sbjct:   175 TGDFQLHTNVND-GSEFGGSIYQKVSDKLETAVN--LAWTAGSNSTRFGIAAKYQLDKDA 231

Query:   214 SVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSA-KIGLALALK 263
             S+ A+VNN            RP    T+S  VD ++I     K+GL L L+
Sbjct:   232 SISAKVNNTSLVGVGYTQSLRPGIKLTLSALVDGKSINSGGHKLGLGLELE 282

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0006820 "anion transport" evidence=IEA

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0008308 "voltage-gated anion channel activity" evidence=IEA

GO:0031101 "fin regeneration" evidence=IEP

TAIR|locus:2151749 AT5G37610 [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 55/165 (33%), Positives = 74/165 (44%)

Query:   101 EYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIAS 160
             E A IST +G  ANPI              G +L+ D      TK N  LS    D   +
Sbjct:     4 ERARISTIVGLFANPILSFSAVFGNDFWRFGFELTLDLVNRIITKANTVLSLITEDTTTT 63

Query:   161 LTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHAL--DPLTSVKAR 218
              +++ K     ASYY  +   + T  GAE  +  S   N+ +IG +H    D L      
Sbjct:    64 FSIDKKASLFTASYYQRLH--SKTVCGAEAKYILSDKSNSFSIGKRHLFGDDDLIQALLS 121

Query:   219 VNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSA-KIGLALAL 262
             V+N G    L QH W  KS FTI+GE   R +  S+ + GLA+ L
Sbjct:   122 VSNGGSMRVLFQHHWTLKSFFTIAGE---RLLNHSSQRFGLAVEL 163

GO:0005739 "mitochondrion" evidence=ISM

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0006820 "anion transport" evidence=IEA

GO:0008308 "voltage-gated anion channel activity" evidence=IEA

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

ZFIN|ZDB-GENE-040426-954 zgc:56235 "zgc:56235" [Danio rerio (taxid:7955)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 66/239 (27%), Positives = 106/239 (44%)

Query:    30 TSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITV-DEPAPGLK-SIFSFIVP 87
             T +G   G L   +   +LK+  ++ + K +T++ L T ++V D+ A GLK ++ +  VP
Sbjct:    49 TDTGKAAGSL---ETKYKLKDLGLSFNQKWNTDNMLTTEVSVEDQLAEGLKVALDTSFVP 105

Query:    88 D--QRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTK 145
             +  ++SGK++  Y+ E+  +S  + F   P+             LG  ++FDTA     +
Sbjct:   106 NTGKKSGKLKTSYKREFVNVSCDLDFEG-PVVHSAAVLGYEGWLLGYLVAFDTAKSKLVQ 164

Query:   146 CNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGT 205
              N  L Y   D      +ND G     S Y  VS    TAV   L  +  SN     +  
Sbjct:   165 NNFALGYKTGDFQLHTNVND-GAEFGGSVYQKVSDQLETAV--TLAWTAGSNNTRFGVAA 221

Query:   206 QHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSA-KIGLALALK 263
             ++ LD   S+ A+VNN            RP    T+S  VD +       K+GL   L+
Sbjct:   222 KYQLDKDASLSAKVNNASLIGIGYTQSLRPGVKLTLSALVDGKNFNTGGHKVGLGFELE 280

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006820 "anion transport" evidence=IEA

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0008308 "voltage-gated anion channel activity" evidence=IEA

FB|FBgn0004363 porin "porin" [Drosophila melanogaster (taxid:7227)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 62/239 (25%), Positives = 105/239 (43%)

Query:    32 SGVKKGELFLA-DVSTQLKNKNITTDVKVDTNSNLFTTITV-DEPAPGLK-SIFSFIVPD 88
             S  + G++F + +   ++K+  +T   K +T++ LFT + V D+   GLK S+     P 
Sbjct:    46 SNQESGKVFGSLETKYKVKDYGLTLTEKWNTDNTLFTEVAVQDQLLEGLKLSLEGNFAPQ 105

Query:    89 Q--RSGKVELQYQHEYAGISTGIGFTAN-PIXXXXXXXXXXXXALGTDLSFDTATGNFTK 145
                ++GK ++ Y HE     + +      P+              G   +FDT     T 
Sbjct:   106 SGNKNGKFKVAYGHENVKADSDVNIDLKGPLINASAVLGYQGWLAGYQTAFDTQQSKLTT 165

Query:   146 CNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGT 205
              N  L YT  D +    +ND G   + S +   S   +  VG +L+ +  ++     IG 
Sbjct:   166 NNFALGYTTKDFVLHTAVND-GQEFSGSIFQRTSDKLD--VGVQLSWASGTSNTKFAIGA 222

Query:   206 QHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSA-KIGLALALK 263
             ++ LD   SV+A+VNN  +     Q + R     T+S  VD +       KIG+ L L+
Sbjct:   223 KYQLDDDASVRAKVNNASQVGLGYQQKLRDGVTLTLSTLVDGKNFNAGGHKIGVGLELE 281

GO:0005741 "mitochondrial outer membrane" evidence=ISS;NAS

GO:0008308 "voltage-gated anion channel activity" evidence=ISS;IDA

GO:0006839 "mitochondrial transport" evidence=ISS

GO:0016006 "Nebenkern" evidence=IDA

GO:0006811 "ion transport" evidence=IDA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0007602 "phototransduction" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0007005 "mitochondrion organization" evidence=IMP

GO:0030382 "sperm mitochondrion organization" evidence=IMP

GO:0007291 "sperm individualization" evidence=IMP

UNIPROTKB|F1P0E4 VDAC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 67/244 (27%), Positives = 103/244 (42%)

Query:    30 TSSGVKKGELFLADVSTQLKNK----NITTDVKVDTNSNLFTTITV-DEPAPGLKSIF-S 83
             T+SG    +    + S + K K     +T   K +T++ L T I + D+ A GLK  F +
Sbjct:    43 TTSGSSNTDTGKVNGSLETKYKWAEYGLTFTEKWNTDNTLGTEIAIEDQIAKGLKLTFDT 102

Query:    84 FIVPD--QRSGKVELQYQHEYAGISTGIGFT-ANPIXXXXXXXXXXXXALGTDLSFDTAT 140
                P+  ++SGK++  Y+ E   +   + F  A P               G  ++FD+A 
Sbjct:   103 TFSPNTGKKSGKIKSAYKRECLNLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAK 162

Query:   141 GNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENT 200
                T+ N  + Y   D      +ND G     S Y  VS    TAV   L  +  SN   
Sbjct:   163 SKLTRNNFSVGYKTGDFQLHTNVND-GSEFGGSIYQKVSDNLETAVN--LAWTAGSNSTR 219

Query:   201 LTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSA-KIGLA 259
               I  ++ LD   S+ A+VNN            RP    T+S  +D ++I     K+GL 
Sbjct:   220 FGIAAKYKLDSTASISAKVNNSSLVGVGYTQTLRPGVKLTLSALIDGKSINAGGHKLGLG 279

Query:   260 LALK 263
             L L+
Sbjct:   280 LELE 283

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0008308 "voltage-gated anion channel activity" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0032272 "negative regulation of protein polymerization" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:2001243 "negative regulation of intrinsic apoptotic signaling pathway" evidence=IEA

UNIPROTKB|Q9I9D1 VDAC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 67/244 (27%), Positives = 103/244 (42%)

Query:    30 TSSGVKKGELFLADVSTQLKNK----NITTDVKVDTNSNLFTTITV-DEPAPGLKSIF-S 83
             T+SG    +    + S + K K     +T   K +T++ L T I + D+ A GLK  F +
Sbjct:    42 TTSGSSNTDTGKVNGSLETKYKWAEYGLTFTEKWNTDNTLGTEIAIEDQIAKGLKLTFDT 101

Query:    84 FIVPD--QRSGKVELQYQHEYAGISTGIGFT-ANPIXXXXXXXXXXXXALGTDLSFDTAT 140
                P+  ++SGK++  Y+ E   +   + F  A P               G  ++FD+A 
Sbjct:   102 TFSPNTGKKSGKIKSAYKRECLNLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAK 161

Query:   141 GNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENT 200
                T+ N  + Y   D      +ND G     S Y  VS    TAV   L  +  SN   
Sbjct:   162 SKLTRNNFSVGYKTGDFQLHTNVND-GSEFGGSIYQKVSDNLETAVN--LAWTAGSNSTR 218

Query:   201 LTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSA-KIGLA 259
               I  ++ LD   S+ A+VNN            RP    T+S  +D ++I     K+GL 
Sbjct:   219 FGIAAKYKLDSTASISAKVNNSSLVGVGYTQTLRPGVKLTLSALIDGKSINAGGHKLGLG 278

Query:   260 LALK 263
             L L+
Sbjct:   279 LELE 282

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0008308 "voltage-gated anion channel activity" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0032272 "negative regulation of protein polymerization" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:2001243 "negative regulation of intrinsic apoptotic signaling pathway" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P46274	VDAC1_WHEAT	No assigned EC number	0.6722	0.8939	0.8581	N/A	no
P42057	VDAC_MAIZE	No assigned EC number	0.6118	0.8939	0.8519	N/A	no
P42056	VDAC2_SOLTU	No assigned EC number	0.8734	0.8977	0.8586	N/A	no
P42055	VDAC1_SOLTU	No assigned EC number	0.7838	0.8939	0.8550	N/A	no
P42054	VDAC_PEA	No assigned EC number	0.7341	0.8977	0.8586	N/A	no
Q6K548	VDAC1_ORYSJ	No assigned EC number	0.6708	0.8939	0.8613	yes	no
Q9SRH5	VDAC1_ARATH	No assigned EC number	0.7341	0.8977	0.8586	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00082030 SubName- Full=Putative uncharacterized protein; (276 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	264
pfam01459	272	pfam01459, Porin_3, Eukaryotic porin	1e-80
cd07306	276	cd07306, Porin3_VDAC, Voltage-dependent anion chan	2e-77
cd07305	279	cd07305, Porin3_Tom40, Translocase of outer mitoch	3e-12
cd07303	274	cd07303, Porin3, Eukaryotic porin family that form	2e-10

>gnl|CDD|216515 pfam01459, Porin_3, Eukaryotic porin

 Score =  243 bits (622), Expect = 1e-80
 Identities = 105/238 (44%), Positives = 141/238 (59%), Gaps = 9/238 (3%)

Query: 27  QAITSSGVKK--GELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDE-PAPGLKSIFS 83
            A T SG K   G L   D   + K+K +T  +K DT+++L T  TV++  APGLK   S
Sbjct: 37  VAFTVSGSKSLGGGLSSGDFEAKYKDKGLTLTLKWDTDNDLSTNATVNDQLAPGLKLKLS 96

Query: 84  F-IVPDQ--RSGKVELQYQHEYAGISTGIGFTANPIVNFSGVVGNNSVALGTDLSFDTAT 140
             +VP    +S K+EL+Y+ +    S  +G    PIV  S + G   +ALG +  +DTA+
Sbjct: 97  TQLVPGTGKKSAKLELEYKGDDFTASLKVGLLKGPIVVGSALQGVTGLALGAEAVYDTAS 156

Query: 141 GNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENT 200
           G  TK NA L Y   D IASLTLN+KGD L ASYYH VS      VGAELT +FSSNE T
Sbjct: 157 GKLTKYNAALGYAARDYIASLTLNNKGDVLTASYYHKVSD--KLEVGAELTWNFSSNETT 214

Query: 201 LTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTR-AIEKSAKIG 257
            T+G ++ LDP T+VKA+V++ G+   L++   RP    T+S EVD +  IE + K G
Sbjct: 215 TTVGYKYDLDPSTTVKAKVDSNGKVGLLLEKRLRPGVTLTLSAEVDHKKLIEGAHKFG 272

Length = 272

>gnl|CDD|132767 cd07306, Porin3_VDAC, Voltage-dependent anion channel of the outer mitochondrial membrane

 Score =  235 bits (601), Expect = 2e-77
 Identities = 92/243 (37%), Positives = 131/243 (53%), Gaps = 10/243 (4%)

Query: 28  AITSSGVKKGELFLADVSTQLKNKN--ITTDVKVDTNSNLFTTITVDEP-APGLKSIFSF 84
             TS+G KK +      S + K K   +T   K +T++ L T IT+++  APGLK     
Sbjct: 37  EFTSTGSKKPDTGKVSGSLEAKYKIKGLTLTQKWNTDNVLLTEITIEDLLAPGLKLTLDT 96

Query: 85  IVP---DQRSGKVELQYQHEYAGISTGIGFTANPIVNFSGVVGNNSVALGTDLSFDTATG 141
             P    ++SGK++  Y+H+   I+  +     P+V  S V+G     LG ++ +DTA  
Sbjct: 97  TFPPNTGKKSGKLKAGYKHDPININADVDLNKGPLVGASAVLGYKGFLLGAEVVYDTAKS 156

Query: 142 NFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTL 201
            FTK N  L YT+ D   SL LN+ G TL  SY+H VSP    AVGA++T    +NE T 
Sbjct: 157 KFTKYNFALGYTNGDFELSLKLNN-GKTLRGSYFHKVSP--RLAVGAKVTWYSGTNETTF 213

Query: 202 TIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRA-IEKSAKIGLAL 260
            +G Q+ALDP   VKA+VNN G+     QH+ RP    T+S   D +   +   K GL+L
Sbjct: 214 AVGGQYALDPDALVKAKVNNDGQLGLSYQHKLRPGVTLTLSAGFDAKNLNQGGHKFGLSL 273

Query: 261 ALK 263
           +LK
Sbjct: 274 SLK 276

The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies. Length = 276

>gnl|CDD|132766 cd07305, Porin3_Tom40, Translocase of outer mitochondrial membrane 40 (Tom40)

 Score = 64.9 bits (159), Expect = 3e-12
 Identities = 54/218 (24%), Positives = 90/218 (41%), Gaps = 25/218 (11%)

Query: 58  KVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFT-ANP- 115
            +D + NL   I        L+S     +  Q S     Q + +Y G         ANP 
Sbjct: 73  DIDNDGNLNARIIHQ-LGDRLRSKLQAQL--QDSKFNMSQLELDYRGDDFTASLKLANPD 129

Query: 116 IVNFSGVVG-------NNSVALGTDLSFDTATGNFTKCNAGLS----YTHTDLIASLTLN 164
           I+N +G+            +ALG +L +    GN     + LS    YT  + IAS  L 
Sbjct: 130 ILNETGIYVASYLQSVTPKLALGGELVYQRVPGN---GISVLSYAARYTAGNWIASGQLG 186

Query: 165 DKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGR 224
            +G  L+ SYY  +S      +G EL  +  + E+T T+G Q+     +  +  +++ G+
Sbjct: 187 AQG-GLHLSYYRKLSD--KLQLGVELELNLRTRESTATLGYQYDF-RQSRFRGSIDSNGK 242

Query: 225 ASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALAL 262
            SA+++          +SGE++        K G  L +
Sbjct: 243 VSAVLEKRLPLPLSLLLSGELNHVK--NDYKFGFGLTI 278

Tom40 forms a channel in the mitochondrial outer membrane with a pore about 1.5 to 2.5 nanometers wide. It functions as a transport channel for unfolded protein chains and forms a complex with Tom5, Tom6, Tom7, and Tom22. The primary receptors Tom20 and Tom70 recruit the unfolded precursor protein from the mitochondrial-import stimulating factor (MSF) or cytosolic Hsc70. The precursor passes through the Tom40 channel and through another channel in the inner membrane, formed by Tim23, to be finally translocated into the mitochondrial matrix. The process depends on a proton motive force across the inner membrane and requires a contact site where the outer and inner membranes come close. Tom40 is also involved in inserting outer membrane proteins into the membrane, most likely not via a lateral opening in the pore, but by transfering precursor proteins to an outer membrane sorting and assembly machinery. Length = 279

>gnl|CDD|132765 cd07303, Porin3, Eukaryotic porin family that forms channels in the mitochondrial outer membrane

 Score = 59.6 bits (144), Expect = 2e-10
 Identities = 52/207 (25%), Positives = 84/207 (40%), Gaps = 11/207 (5%)

Query: 58  KVDTNSNLFTTITV-DEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFT---A 113
           K +T++ L   ITV D+ + GLKS F        +GK   + +  Y  I+ G       A
Sbjct: 70  KWNTDNTLGLEITVEDQLSRGLKSTFD-SSFSPNTGKKNAKIKTGYKRINLGCDVDFDIA 128

Query: 114 NPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCNAGLSYTH--TDLIASLTLNDKGDTLN 171
            P++  + V+G      G  + F+T +   T+ N  + Y     +  A   +ND G    
Sbjct: 129 GPLIRGALVLGYEGWLAGYQMVFETVSRV-TQSNFAVGYKTDYNEFQAHTNVND-GTEFG 186

Query: 172 ASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQH 231
            S YH V+      VG  L  +  ++     I  ++ +DP     A VNN          
Sbjct: 187 GSIYHKVN--DKLEVGVNLAATAGNSNTRFGIAAKYQVDPDACFSASVNNSSLVGLGYTQ 244

Query: 232 EWRPKSLFTISGEVDTRAIEKSAKIGL 258
             +P    T+S  +D +A      +GL
Sbjct: 245 TLKPGIKLTLSALLDHKAGGHKLGLGL 271

The porin family 3 contains two sub-families that play vital roles in the mitochondrial outer membrane, a translocase for unfolded pre-proteins (Tom40) and the voltage-dependent anion channel (VDAC) that regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane. Length = 274

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	264
cd07306	276	Porin3_VDAC Voltage-dependent anion channel of the	100.0
KOG3126	281	consensus Porin/voltage-dependent anion-selective	100.0
cd07303	274	Porin3 Eukaryotic porin family that forms channels	100.0
cd07305	279	Porin3_Tom40 Translocase of outer mitochondrial me	100.0
PF01459	273	Porin_3: Eukaryotic porin; InterPro: IPR001925 The	100.0
KOG3296	308	consensus Translocase of outer mitochondrial membr	100.0
TIGR00989	161	3a0801s07tom40 mitochondrial import receptor subun	99.73
cd07305	279	Porin3_Tom40 Translocase of outer mitochondrial me	99.39
PF01459	273	Porin_3: Eukaryotic porin; InterPro: IPR001925 The	99.0
cd07306	276	Porin3_VDAC Voltage-dependent anion channel of the	98.86
cd07303	274	Porin3 Eukaryotic porin family that forms channels	98.67
TIGR00989	161	3a0801s07tom40 mitochondrial import receptor subun	97.82
KOG3126	281	consensus Porin/voltage-dependent anion-selective	97.25
KOG3296	308	consensus Translocase of outer mitochondrial membr	96.27
PF10082	381	DUF2320: Uncharacterized protein conserved in bact	92.61
PRK10716	435	long-chain fatty acid outer membrane transporter;	89.18
PF11854	637	DUF3374: Protein of unknown function (DUF3374); In	85.97
PF12519	260	DUF3722: Protein of unknown function (DUF3722) ; I	85.71
COG2067	440	FadL Long-chain fatty acid transport protein [Lipi	84.9
COG2067	440	FadL Long-chain fatty acid transport protein [Lipi	84.51
PF03349	427	Toluene_X: Outer membrane protein transport protei	82.52
PF03349	427	Toluene_X: Outer membrane protein transport protei	81.32

>cd07306 Porin3_VDAC Voltage-dependent anion channel of the outer mitochondrial membrane

Probab=100.00  E-value=2.9e-50  Score=359.53  Aligned_cols=239  Identities=38%  Similarity=0.561  Sum_probs=227.3

Q ss_pred             eecceEEEEEeeeeCC--ceeEEEEEEEEeeCceEEEEEEcCCCcEEEEEEEec-CCCCeEEEEEEEec---CCCCceeE
Q 024666           22 LVMHLQAITSSGVKKG--ELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDE-PAPGLKSIFSFIVP---DQRSGKVE   95 (264)
Q Consensus        22 ~~~~~v~~~s~~~~~~--~~~~g~l~~~y~~~~~~l~~~~~t~g~l~~~i~~~~-~~~glk~~~~~~~p---~~~~~k~~   95 (264)
                      ..++|++|++++.+++  ++++|++|++|+.++++++++|+|+|++.+++++++ ++||+|++++.++|   +.++++++
T Consensus        31 k~~~gv~~~~~g~~~~~~~~~~g~~e~k~~~~~~t~~~k~~t~n~l~t~v~~~~~~~~glk~~~~~~~~p~~~~~s~kl~  110 (276)
T cd07306          31 KTPNGVEFTSTGSKKPDTGKVSGSLEAKYKIKGLTLTQKWNTDNVLLTEITIEDLLAPGLKLTLDTTFPPNTGKKSGKLK  110 (276)
T ss_pred             ECCCCeEEEEEEEeCCCCceEEEEEEEEEEeCCEEEEEEEeCCCceeEEEEECcccCCcceEEEEEEECCCCCCceEEEE
Confidence            4677999999998877  799999999999999999999999999999999999 77999999999975   36799999


Q ss_pred             EEEeecceeeeEEEeccCCCeEEEEEEEeCCcceEeEEEEeecCCCcceeEEEEEeEEcCCeEEEEEEccCCCeEEEEEE
Q 024666           96 LQYQHEYAGISTGIGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYY  175 (264)
Q Consensus        96 ~~y~~~~~~~~~~v~l~~~P~~~~s~v~~~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~~d~~~s~~~~~~~~~~~~Sy~  175 (264)
                      ++|+|+++++++++++..+|.++.++++++++|++|+|+.||..++.+++|+++++|+.+||+++++++| ++.+.+|||
T Consensus       111 ~~y~~~~~~~~~~v~~~~~p~~~~s~~~g~~~~~~G~e~~yd~~~~~~~~~~~~~~Y~~~d~~~s~~l~~-~~~l~~S~~  189 (276)
T cd07306         111 AGYKHDPININADVDLNKGPLVGASAVLGYKGFLLGAEVVYDTAKSKFTKYNFALGYTNGDFELSLKLNN-GKTLRGSYF  189 (276)
T ss_pred             EEEecCCeeEEEEecccCCCeeEEEEEecccceEEEEEEEEeccCCcEeeEEEEEEEecCCeEEEEEECC-CCEEEEEEE
Confidence            9999999999999999889999999999999999999999999988899999999999999999999999 789999999


Q ss_pred             EEeCCCcceeEEEEEEEeecCCceeEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEeeCCCeEEEEEEEeeccccC-CCc
Q 024666          176 HIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIE-KSA  254 (264)
Q Consensus       176 ~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~y~ld~~~~~Kakv~s~g~v~~~y~~kl~p~~~l~ls~~~d~~~~~-~~~  254 (264)
                      ||++|+  +++|+|+.|++..+++++++|+||++|+++++|||||++|.++++||++|+|++++++|+++|+++++ +.|
T Consensus       190 ~kv~~~--l~~g~e~~~~~~~~~~~~~vg~~y~l~~~~~vkakv~~~g~v~~~y~~kl~~~v~~tls~~~d~~~~~~~~~  267 (276)
T cd07306         190 HKVSPR--LAVGAKVTWYSGTNETTFAVGGQYALDPDALVKAKVNNDGQLGLSYQHKLRPGVTLTLSAGFDAKNLNQGGH  267 (276)
T ss_pred             EEcCCC--eEEEEEEEEecCCCCcEEEEEEEEEcCCCCEEEEEECCCceEEEEEEEEcCCCcEEEEEEEeeccCcCCCCC
Confidence            999999  79999999999889999999999999888999999999999999999999999999999999999884 799


Q ss_pred             eeEEEEEEe
Q 024666          255 KIGLALALK  263 (264)
Q Consensus       255 K~G~gl~l~  263 (264)
                      |||++|+||
T Consensus       268 K~G~~l~~~  276 (276)
T cd07306         268 KFGLSLSLK  276 (276)
T ss_pred             eEEEEEEeC
Confidence            999999986

The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies.

>KOG3126 consensus Porin/voltage-dependent anion-selective channel protein [Inorganic ion transport and metabolism]

Probab=100.00  E-value=7.6e-50  Score=350.99  Aligned_cols=241  Identities=38%  Similarity=0.477  Sum_probs=226.1

Q ss_pred             eeecceEEEEEeeeeCC--ceeEEEEEEEEeeC--ceEEEEEEcCCCcEEEEEEEec-CCCCeEEEEEEEecC---CCCc
Q 024666           21 LLVMHLQAITSSGVKKG--ELFLADVSTQLKNK--NITTDVKVDTNSNLFTTITVDE-PAPGLKSIFSFIVPD---QRSG   92 (264)
Q Consensus        21 f~~~~~v~~~s~~~~~~--~~~~g~l~~~y~~~--~~~l~~~~~t~g~l~~~i~~~~-~~~glk~~~~~~~p~---~~~~   92 (264)
                      ..+++||+|+++|..++  +++.|++|++|+.+  +++++++|+|||+|.++|++++ ++||+|++++.++|+   .+++
T Consensus        33 t~t~~gv~ftssg~~~~~~~~v~gsle~k~~~~~~glt~t~kw~Tdn~L~t~I~~~~~~~pglk~~~~~s~~p~~~~ks~  112 (281)
T KOG3126|consen   33 TKTESGVEFTSSGSVNTDTGKVKGSLETKYKDKDYGLTLTEKWNTDNTLGTEITVEDQLAPGLKLTLDSSFSPNTGKKSG  112 (281)
T ss_pred             eeccCcEEEEeeeccccceeeeeeeeEEEEeeccCceEEEEEeecCCccceEEEEccccCCceEEEEEEeecCcccccce
Confidence            34667899999998775  79999999999997  6999999999999999999988 999999999999755   6899


Q ss_pred             eeEEEEeecceeeeEEEeccCCCeEEEEEEEeCCcceEeEEEEeecCCCcceeEEEEEeEEcCCeEEEEEEccCCCeEEE
Q 024666           93 KVELQYQHEYAGISTGIGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNA  172 (264)
Q Consensus        93 k~~~~y~~~~~~~~~~v~l~~~P~~~~s~v~~~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~~d~~~s~~~~~~~~~~~~  172 (264)
                      |++++|.||++++.++..+.++|.+.+++|+++++|++|+|+.||++++.+++|+++++|..+|+++++.++| ++++.+
T Consensus       113 Klk~~y~~~~~~~~~~~~~~~~P~i~~s~v~g~~g~l~G~~~~fDt~~~~~t~~n~~lgy~~~d~~l~~~~nn-~~~~~~  191 (281)
T KOG3126|consen  113 KLKLSYARDHFNLGADDFLTANPLILGSLVLGHEGWLLGYETTFDTASGKLTKYNAALGYTTEDFTLHLNLNN-GTEFLA  191 (281)
T ss_pred             eeecccccccceeeeccccccCCeEEEEEEecccceEEEEeEEEeccCCcEeeEEEEEEeecCCcEEEEEecc-cchhhh
Confidence            9999999999999986444589999999999999999999999999999999999999999999999999999 579999


Q ss_pred             EEEEEeCCCcceeEEEEEEEeecCCceeEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEeeCCCeEEEEEEEeeccccCC
Q 024666          173 SYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEK  252 (264)
Q Consensus       173 Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~y~ld~~~~~Kakv~s~g~v~~~y~~kl~p~~~l~ls~~~d~~~~~~  252 (264)
                      |+|||++++  ++++++++|.....++.++||.||.+|+.+++||||++.|+++++|||+|+|++++++|+++|.++++.
T Consensus       192 s~yq~v~~~--~~~~~~~~~~~~~~~~~~~igt~Y~lD~~t~VkAKVnn~g~~gl~yq~~lrp~i~~t~s~~~d~~~~~~  269 (281)
T KOG3126|consen  192 SIYQRVNEK--LETGANAEWIAGSSNTRFTIGTKYALDPDTSVKAKVNNAGLAGLGYQQTLRPGIKVTLSAEFDGKALDA  269 (281)
T ss_pred             hhhhhhcch--heeeeeEEEeecCCccEEEEEEEeccCCCceeeeeecCCceeeEEEEEecCCCcEEEEEEEEeccCCCC
Confidence            999999999  799999999998889999999999999999999999999999999999999999999999999999955


Q ss_pred             CceeEEEEEEeC
Q 024666          253 SAKIGLALALKP  264 (264)
Q Consensus       253 ~~K~G~gl~l~~  264 (264)
                      .||||++|+|+|
T Consensus       270 ~hK~Glsl~~~~  281 (281)
T KOG3126|consen  270 GHKFGLSLALKP  281 (281)
T ss_pred             CcceeEEEeecC
Confidence            599999999998

>cd07303 Porin3 Eukaryotic porin family that forms channels in the mitochondrial outer membrane

Probab=100.00  E-value=3.1e-47  Score=339.46  Aligned_cols=243  Identities=22%  Similarity=0.313  Sum_probs=220.2

Q ss_pred             hhhhhcCccceeecceEEEEEeeeeCCceeEEEEEEEEeeC--ceEEEEEEcCCCcEEEEEEEec-CCCCeEEEEEEEe-
Q 024666           11 LLLSFLMINALLVMHLQAITSSGVKKGELFLADVSTQLKNK--NITTDVKVDTNSNLFTTITVDE-PAPGLKSIFSFIV-   86 (264)
Q Consensus        11 ~~~~~~~~~~f~~~~~v~~~s~~~~~~~~~~g~l~~~y~~~--~~~l~~~~~t~g~l~~~i~~~~-~~~glk~~~~~~~-   86 (264)
                      +.+++.++|+||++|.+.+.+.  +++|++.++++++|..+  +++++++|++|+.+.+++++.+ +.||+|+++++++ 
T Consensus        23 ~~v~~~~~~~f~~s~~~~~~~~--~~~~~~~~~~~~k~~~~~~~~t~~~~~~~dn~~~~~~~~~~~~~~glk~~~~~~~~  100 (274)
T cd07303          23 LDVKTKSELEFTSSGSANTETI--ESTTKVGGSLETKYRWSPYGLTFTEKWNTDNTLGLEITVEDQLSRGLKSTFDSSFS  100 (274)
T ss_pred             EEEEecCCCccEEccccccccc--CCCceEEEEEEEeeeecCCCeEEEEEEEcCCcceEEEEEecccCCCeEEEEEEEEC
Confidence            4577889999999999988764  55799999999998763  5899999999999999999998 8999999999995 


Q ss_pred             cC--CCCceeEEEEeecceeeeEEEeccCCCeEEEEEEEeCCcceEeEEEEeecCCCcceeEEEEEeEEc--CCeEEEEE
Q 024666           87 PD--QRSGKVELQYQHEYAGISTGIGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCNAGLSYTH--TDLIASLT  162 (264)
Q Consensus        87 p~--~~~~k~~~~y~~~~~~~~~~v~l~~~P~~~~s~v~~~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~--~d~~~s~~  162 (264)
                      |.  .+.++++.+|++++++++.+++. .+|.+..+++.++++|++|+|+.||+.+ ..++++++++|..  +||+++++
T Consensus       101 ~~~~~~~~q~~~~y~~~~~~~~l~~~~-~gp~v~~~~~~g~~~~~~G~e~~yd~~~-~~~~~~~~~~y~~~y~d~~~s~~  178 (274)
T cd07303         101 PNTGKKNAKIKTGYKRINLGCDVDFDI-AGPLIRGALVLGYEGWLAGYQMVFETVS-RVTQSNFAVGYKTDYNEFQAHTN  178 (274)
T ss_pred             CCCccEEEEEeccEEcCCeeEEEEeec-CCCEEEEEEEEeecceEEEEEEEEeccc-cccccceEEEEEccCCCeEEEEE
Confidence            43  35677888888887776666554 5899999999999999999999999987 5689999999999  89999999


Q ss_pred             EccCCCeEEEEEEEEeCCCcceeEEEEEEEeecCCceeEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEeeCCCeEEEEE
Q 024666          163 LNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTIS  242 (264)
Q Consensus       163 ~~~~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~y~ld~~~~~Kakv~s~g~v~~~y~~kl~p~~~l~ls  242 (264)
                      ++| ++.+++|||||++|+  +++|+|++|+.+++++.++||+||++|+++++|||||++|.++++||++|+|+++|++|
T Consensus       179 l~~-~~~l~~Sy~hkvs~~--~~~g~e~~~~~~~~e~~~~vG~~y~l~~~~~vkakids~g~v~~~~~~~l~~~~~ltls  255 (274)
T cd07303         179 VND-GTEFGGSIYHKVNDK--LEVGVNLAATAGNSNTRFGIAAKYQVDPDACFSASVNNSSLVGLGYTQTLKPGIKLTLS  255 (274)
T ss_pred             EcC-CCeEEEEEEEEcCCc--eEEEEEEEeeccCCccEEEEEEEEecCCCCEEEEEECCCceEEEEEEEEcCCCcEEEEE
Confidence            998 789999999999999  79999999998889999999999999888999999999999999999999999999999


Q ss_pred             EEeeccccCCCceeEEEEEE
Q 024666          243 GEVDTRAIEKSAKIGLALAL  262 (264)
Q Consensus       243 ~~~d~~~~~~~~K~G~gl~l  262 (264)
                      +++|++  +++||||+||+|
T Consensus       256 ~~~D~~--~~~~KfG~gl~~  273 (274)
T cd07303         256 ALLDHK--AGGHKLGLGLEF  273 (274)
T ss_pred             EEecCC--CCCeeEEEEEEe
Confidence            999998  889999999987

The porin family 3 contains two sub-families that play vital roles in the mitochondrial outer membrane, a translocase for unfolded pre-proteins (Tom40) and the voltage-dependent anion channel (VDAC) that regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane.

>cd07305 Porin3_Tom40 Translocase of outer mitochondrial membrane 40 (Tom40)

Probab=100.00  E-value=1.9e-44  Score=322.46  Aligned_cols=238  Identities=22%  Similarity=0.304  Sum_probs=210.2

Q ss_pred             hhhhhcCccceeecceEEEEEeeeeCCceeEEEEEEEEeeCc--eEEEEEEcCCCcEEEEEEEecCCCCeEEEEEEEecC
Q 024666           11 LLLSFLMINALLVMHLQAITSSGVKKGELFLADVSTQLKNKN--ITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPD   88 (264)
Q Consensus        11 ~~~~~~~~~~f~~~~~v~~~s~~~~~~~~~~g~l~~~y~~~~--~~l~~~~~t~g~l~~~i~~~~~~~glk~~~~~~~p~   88 (264)
                      +.++|+||||||++|.+.+++....++|.    |++.|..++  +.+.+++|++|++++++.++ +.+.++.++.+++|+
T Consensus        28 ~~~~k~ls~~f~~shs~~lg~~~~~~~y~----f~a~y~~~~~~~~~~~~id~~g~l~~~~~~~-~~~~~~~k~~~~~~~  102 (279)
T cd07305          28 LDVNKGLSPHFQVSHSLHLGSSSLTSSYQ----FGATYVGDKQYPFLQGDIDNDGNLNARIIHQ-LGDRLRSKLQAQLQD  102 (279)
T ss_pred             EEEccccCcCeeEEEEEEECCCCCCCCcE----eeeEEecCCCcEEEEEEeCCCCceeEEEEec-cCcceEEEEEEEecC
Confidence            56789999999999999999864345688    999999988  99999999999999999999 688988888888755


Q ss_pred             C--CCceeEEEEeecceeeeEEEecc-CCCe-EEEEEEEe-------CCcceEeEEEEeec-CCCcceeEEEEEeEEcCC
Q 024666           89 Q--RSGKVELQYQHEYAGISTGIGFT-ANPI-VNFSGVVG-------NNSVALGTDLSFDT-ATGNFTKCNAGLSYTHTD  156 (264)
Q Consensus        89 ~--~~~k~~~~y~~~~~~~~~~v~l~-~~P~-~~~s~v~~-------~~~~~lG~e~~yd~-~~~~~~~~~~~~~Y~~~d  156 (264)
                      .  ...+++.+|.++    +.+++++ .+|. ++.+++++       +|+|++|+|+.|++ +.++++.++++++|+.+|
T Consensus       103 ~~~~~~q~~~dy~g~----d~t~~l~~~n~~~~~~sg~~~~~ylq~vt~~l~lG~E~~~~~~~~~~~~~~~~~~rY~~~d  178 (279)
T cd07305         103 SKFNMSQLELDYRGD----DFTASLKLANPDILNETGIYVASYLQSVTPKLALGGELVYQRVPGNGISVLSYAARYTAGN  178 (279)
T ss_pred             CCceeEEEEEEEcCC----ceEEEEEEeCCCcccccEEEEEEEEEEccCcEEEEEEEEEEEcCCCCceeEEEEEEEccCC
Confidence            3  244555555555    5555555 5785 46666665       99999999999997 567899999999999999


Q ss_pred             eEEEEEEccCCCeEEEEEEEEeCCCcceeEEEEEEEeecCCceeEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEeeCCC
Q 024666          157 LIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPK  236 (264)
Q Consensus       157 ~~~s~~~~~~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~y~ld~~~~~Kakv~s~g~v~~~y~~kl~p~  236 (264)
                      |+++++++++ ..+.+|||||++|+  +++|+|++|+...+++.+++|+||.++ ++++||+||++|.|+++||+||+|+
T Consensus       179 ~~~s~~l~~~-~~l~asY~~kvs~~--l~lG~el~~~~~~~es~~tvg~~y~~~-~~~~k~~ids~g~v~~~~e~~l~~~  254 (279)
T cd07305         179 WIASGQLGAQ-GGLHLSYYRKLSDK--LQLGVELELNLRTRESTATLGYQYDFR-QSRFRGSIDSNGKVSAVLEKRLPLP  254 (279)
T ss_pred             EEEEEEEcCC-CeEEEEEEEEcccc--eEeeeeeeecccCCceeEEEEEEEEcC-CCEEEEEEcCCCEEEEEEEEecCCC
Confidence            9999999995 69999999999999  799999999999999999999999994 9999999999999999999999999


Q ss_pred             eEEEEEEEeeccccCCCceeEEEEEEe
Q 024666          237 SLFTISGEVDTRAIEKSAKIGLALALK  263 (264)
Q Consensus       237 ~~l~ls~~~d~~~~~~~~K~G~gl~l~  263 (264)
                      +++++|+++|++  ++.+|||+||+|+
T Consensus       255 ~~l~ls~~~d~~--~~~~kfG~gl~i~  279 (279)
T cd07305         255 LSLLLSGELNHV--KNDYKFGFGLTIG  279 (279)
T ss_pred             eEEEEEEEEccc--CCcceEEEEEEeC
Confidence            999999999998  7899999999985

Tom40 forms a channel in the mitochondrial outer membrane with a pore about 1.5 to 2.5 nanometers wide. It functions as a transport channel for unfolded protein chains and forms a complex with Tom5, Tom6, Tom7, and Tom22. The primary receptors Tom20 and Tom70 recruit the unfolded precursor protein from the mitochondrial-import stimulating factor (MSF) or cytosolic Hsc70. The precursor passes through the Tom40 channel and through another channel in the inner membrane, formed by Tim23, to be finally translocated into the mitochondrial matrix. The process depends on a proton motive force across the inner membrane and requires a contact site where the outer and inner membranes come close. Tom40 is also involved in inserting outer membrane proteins into the membrane, most likely not via a lateral opening in the pore, but by transfering precursor proteins to an outer membrane sorting and assembly machinery.

>PF01459 Porin_3: Eukaryotic porin; InterPro: IPR001925 The major protein of the outer mitochondrial membrane of eukaryotes is a porin that forms a voltage-dependent anion-selective channel (VDAC) that behaves as a general diffusion pore for small hydrophilic molecules [, , , ]

Probab=100.00  E-value=6.9e-38  Score=277.96  Aligned_cols=231  Identities=32%  Similarity=0.415  Sum_probs=194.3

Q ss_pred             cCccceeecceEEEEEeeeeCCceeEEEEEEEEeeCceEEEEEEcCCCcEEEEEEEec-CCCCeEEEEEEEe-cC--CCC
Q 024666           16 LMINALLVMHLQAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDE-PAPGLKSIFSFIV-PD--QRS   91 (264)
Q Consensus        16 ~~~~~f~~~~~v~~~s~~~~~~~~~~g~l~~~y~~~~~~l~~~~~t~g~l~~~i~~~~-~~~glk~~~~~~~-p~--~~~   91 (264)
                      .++|+|+++|.+.++.     +..+.+.|+++|.  +..++.+|+.++....+++++. +.|++++++.++. |+  .+.
T Consensus        34 ~~~~~f~~~~~~~~~~-----~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  106 (273)
T PF01459_consen   34 PNGPNFTVSHSFSLGT-----SVPSSYSFGAKYK--GPKLTVKGDTDNDGNLEASVRNKLSPGLKLKLSAQLSPGSGKKS  106 (273)
T ss_dssp             TTCEEEEEEEEEETTT-----T--EEEEEEEEEE--CEEEEEEEETTTEEEEEEEEESSTTTTEEEEEEEEE-TTTS-EE
T ss_pred             cCcceEEEEEEEecCC-----CCccceEEEEEEe--CceeeEEEEeCCcccEEEEEecccCcceEEEEEEEEeecCCcee
Confidence            4455555555322221     1367888999999  5555567777777777777777 8999999999995 44  268


Q ss_pred             ceeEEEEeecceeeeEEEeccCCCeEEEEEEE-eCCcceEeEEEEeecCCCcceeEEEEEeEEcC----CeEEEEEEccC
Q 024666           92 GKVELQYQHEYAGISTGIGFTANPIVNFSGVV-GNNSVALGTDLSFDTATGNFTKCNAGLSYTHT----DLIASLTLNDK  166 (264)
Q Consensus        92 ~k~~~~y~~~~~~~~~~v~l~~~P~~~~s~v~-~~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~~----d~~~s~~~~~~  166 (264)
                      .+++++|+++++++.++++...+|.+.++.+. ..|+|++|+|+.||..++...+|+++++|..+    +|++++++.+.
T Consensus       107 ~~l~~~y~~~~~~~~~~~~~~~~~~~~~s~~~~v~~~~~lG~e~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~  186 (273)
T PF01459_consen  107 AQLEADYKGDDFNATFKVDNDNNPIFNASYVQSVTPNLALGAEATYDLSSGKSSKYNAGLSYAARYTHPDYTASATLSNN  186 (273)
T ss_dssp             EEEEEEEEETTEEEEEEEEESTS-EEEEEEEEEET-TEEEEEEEEEETTTTCEEEEEEEEEEEET----TEEEEEEE-ET
T ss_pred             eEEEEEEecCCEEEEEEEcccCCCcEEEEEEEeccccEEEEEEEEEecccCCcCcceEEEEEeccccceeEEEEEEEcCC
Confidence            89999999999999999987558999999999 56699999999999999999999999999888    99999999655


Q ss_pred             CCeEEEEEEEEeCCCcceeEEEEEEEeecCCceeEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEeeCCCeEEEEEEEee
Q 024666          167 GDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVD  246 (264)
Q Consensus       167 ~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~y~ld~~~~~Kakv~s~g~v~~~y~~kl~p~~~l~ls~~~d  246 (264)
                      .+.+.+|||||++++  +++|+|++|+...+++.++||++|++++.+++|+|||++|.|+++||++|+|++++++|+++|
T Consensus       187 ~~~l~~sy~~k~~~~--~~~g~e~~~~~~~~~~~~~vG~~~~l~~~~~vk~kvds~g~v~~~~~~~l~~~~~l~ls~~~d  264 (273)
T PF01459_consen  187 FGTLTASYFQKVNDK--LQLGAELTYNLSSRESTFTVGYQYKLDDSSTVKAKVDSNGRVSASYEQKLNPGVTLTLSAELD  264 (273)
T ss_dssp             TTEEEEEEEEESSTT--EEEEEEEEEETTCCEEEEEEEEEEEECTTEEEEEEEETTSEEEEEEEEEECTTEEEEEEEEEC
T ss_pred             CCEEEEEEEEEeccc--eeeeeeeeecccCCCceEEEEEEEEcCcccEEEEEEcCCCEEEEEEEEecCCCcEEEEEEEEc
Confidence            789999999999999  799999999999999999999999997777999999999999999999999999999999999


Q ss_pred             ccccCCCceeE
Q 024666          247 TRAIEKSAKIG  257 (264)
Q Consensus       247 ~~~~~~~~K~G  257 (264)
                      ++  +..||||
T Consensus       265 ~~--~~~~KfG  273 (273)
T PF01459_consen  265 HK--NNNHKFG  273 (273)
T ss_dssp             TT---C-EEEE
T ss_pred             cC--CCCCCcC
Confidence            99  5589998

The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. This protein contains about 280 amino acids and its sequence is composed of between 12 to 16 beta-strands that span the mitochondrial outer membrane. Yeast contains two members of this family (genes POR1 and POR2); vertebrates have at least three members (genes VDAC1, VDAC2 and VDAC3) [].; GO: 0008308 voltage-gated anion channel activity, 0006820 anion transport, 0044070 regulation of anion transport, 0055085 transmembrane transport, 0005741 mitochondrial outer membrane; PDB: 3EMN_X 2K4T_A 2JK4_A.

>KOG3296 consensus Translocase of outer mitochondrial membrane complex, subunit TOM40 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.8e-35  Score=260.55  Aligned_cols=245  Identities=17%  Similarity=0.224  Sum_probs=210.3

Q ss_pred             hhhhhhhcCccceeecceEEEEEeeeeCCce----eEEEEEEEEeeCceEEEEEEcCCCcEEEEEEEecCCCCeEEEEEE
Q 024666            9 RLLLLSFLMINALLVMHLQAITSSGVKKGEL----FLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSF   84 (264)
Q Consensus         9 ~~~~~~~~~~~~f~~~~~v~~~s~~~~~~~~----~~g~l~~~y~~~~~~l~~~~~t~g~l~~~i~~~~~~~glk~~~~~   84 (264)
                      +.|.++|+|||||||+|.+.++..+ +.++.    -.+.+++.|....+.+.+.+|+||++++++.++ +.++|+.++..
T Consensus        50 ~kl~v~k~Ls~~fqvs~t~~ls~~~-~sg~~fg~ty~~~~q~~~~~~~~il~G~vD~~Gslna~l~~~-l~~~Lr~K~~~  127 (308)
T KOG3296|consen   50 VKLGVNKGLSNHFQVSPTFVLSHIA-ASGYRFGPTYVYTFQASPTEAFLILRGDVDNDGSLNARLIHQ-LTDNLRSKVAL  127 (308)
T ss_pred             eEeeecccccCceEeccceecccCc-cccceeccceeeeeccccCCCcceEEEecCCCCchhheeecc-cchhhHHHHHH
Confidence            4688999999999999999998765 23332    235577776666788999999999999999999 68888777766


Q ss_pred             EecCCCCceeEEEEeecceeeeEEEecc-CCCeEEEEEEE-------eCCcceEeEEEEeec-CCCcceeEEEEEeEEcC
Q 024666           85 IVPDQRSGKVELQYQHEYAGISTGIGFT-ANPIVNFSGVV-------GNNSVALGTDLSFDT-ATGNFTKCNAGLSYTHT  155 (264)
Q Consensus        85 ~~p~~~~~k~~~~y~~~~~~~~~~v~l~-~~P~~~~s~v~-------~~~~~~lG~e~~yd~-~~~~~~~~~~~~~Y~~~  155 (264)
                      ++++  ...++.|+..++++.+.+..+. .+|.+..++++       .+|+|+||+|+.|+. ........+.++||...
T Consensus       128 q~~~--~k~ve~q~~~e~~g~d~t~~~~~~n~~~~~sgi~v~~~lqsvT~~LsLG~El~~~~~~~~~~s~ls~a~RY~~~  205 (308)
T KOG3296|consen  128 QIQQ--SKEVESQVTGEYRGRDYTLTLPLGNPDLGESGIYVASYLQSVTPRLSLGGELLYQRRPGPEESGLSYAGRYEHS  205 (308)
T ss_pred             Hhcc--hhhhccccccceecccccccccccCcccccchHHHHHHHhhhcccccccceeEeccCCCccccceeeeeeeeec
Confidence            6533  4578999999999999888777 68887666665       399999999999998 33456678888899999


Q ss_pred             CeEEEEEEccCCCeEEEEEEEEeCCCcceeEEEEEEEeecCCceeEEEEEEEee-CCCCeEEEEEcCCceEEEEEEEeeC
Q 024666          156 DLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHAL-DPLTSVKARVNNYGRASALIQHEWR  234 (264)
Q Consensus       156 d~~~s~~~~~~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~y~l-d~~~~~Kakv~s~g~v~~~y~~kl~  234 (264)
                      +|++++++.-.  ..+++||||..++  ++.|+|+.++..-+++..+++++|++ .+++.+|++||+||.|++++|+||.
T Consensus       206 ~~~~~~t~g~~--g~~~~y~~r~~~~--~~~~ve~~~~~~~~~~~~t~a~~~~l~~~~s~~rg~vDSn~~v~~~lek~L~  281 (308)
T KOG3296|consen  206 NWDATVTLGQQ--GLTGTYYQRAVEK--LQMGVEFETNTRLQSTDVTAAYGYDLPTAQSVFRGSVDSNWSVGAVLEKKLP  281 (308)
T ss_pred             ceeeEEecccc--cceehhhhhhhhh--hccceeEeeecccCCcceEEEEEeeccCccceEEEEeccCceehhhhHhhcC
Confidence            99999999874  6899999999999  79999999999888999999999998 6789999999999999999999997


Q ss_pred             CCeEEEEEEEeeccccCCCceeEEEEEEe
Q 024666          235 PKSLFTISGEVDTRAIEKSAKIGLALALK  263 (264)
Q Consensus       235 p~~~l~ls~~~d~~~~~~~~K~G~gl~l~  263 (264)
                      +++++.+|+++||.  +..+|||+||++.
T Consensus       282 l~l~~~ls~~lnh~--k~~~~~G~gl~~~  308 (308)
T KOG3296|consen  282 LPLTLALSAELNHV--KNDFKFGFGLTIG  308 (308)
T ss_pred             CCceeeeeeeeccc--ccccccceeEEeC
Confidence            79999999999999  8899999999974

>TIGR00989 3a0801s07tom40 mitochondrial import receptor subunit Tom40

Probab=99.73  E-value=7.3e-17  Score=131.06  Aligned_cols=117  Identities=14%  Similarity=0.097  Sum_probs=92.0

Q ss_pred             hhhhc--CccceeecceEEEEEeeeeCCceeEEEEEEEEeeCceEEEEEEcCCCcEEEEEEEecCCCCeEEEEEEEecC-
Q 024666           12 LLSFL--MINALLVMHLQAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPD-   88 (264)
Q Consensus        12 ~~~~~--~~~~f~~~~~v~~~s~~~~~~~~~~g~l~~~y~~~~~~l~~~~~t~g~l~~~i~~~~~~~glk~~~~~~~p~-   88 (264)
                      .++|+  ||||||++|.+.|++.. .++|.    |++.|.++++.+.+.+|+||++++++.++| .+.+..++++++.+ 
T Consensus        31 d~~K~~~ls~~FqvSHs~~mgs~~-~p~Y~----FgA~y~~~~~~l~G~id~dG~l~ar~~~~~-~~~~~~K~~~Q~~~~  104 (161)
T TIGR00989        31 DVTKAFSLAPLFQVSHQFAMGSQR-LPPYA----FSALFGTNQLFAQGNLDNDGAVSTRLNYRW-GDRTISKVQFQISGG  104 (161)
T ss_pred             EEecccccCCceeEEEEEEeCCCC-CCCce----eeeEecCCcEEEEEEeCCCCCEEEEEEEee-CcceeEEEEEEecCC
Confidence            45666  69999999999999854 45788    999999888999999999999999999994 78877777776432 


Q ss_pred             -CCCceeEEEEeecceeeeEEEeccCCCeE-EE--EEEE-------eCCcceEeEEEEee
Q 024666           89 -QRSGKVELQYQHEYAGISTGIGFTANPIV-NF--SGVV-------GNNSVALGTDLSFD  137 (264)
Q Consensus        89 -~~~~k~~~~y~~~~~~~~~~v~l~~~P~~-~~--s~v~-------~~~~~~lG~e~~yd  137 (264)
                       ....+++.||+.+++.+..++   .||.+ +.  ++++       .||+|+||+|+.|+
T Consensus       105 ~~~~~Q~e~DY~G~Dft~~lk~---~Np~~~~~~~sGi~v~sylQsVTp~LaLG~E~~yq  161 (161)
T TIGR00989       105 QPDMCQFEHDHLGDDFSASLKA---INPSFLEKGLTGIFVGSYLQSVTPRLGLGLEALWQ  161 (161)
T ss_pred             CCceEEEEEEecCCeEEEEEEE---cCcccccccceEEEEEeeeehhCcceeeeeeeEeC
Confidence             245677888888865544433   48885 32  5554       39999999999995

translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom40 proteins.

>cd07305 Porin3_Tom40 Translocase of outer mitochondrial membrane 40 (Tom40)

Probab=99.39  E-value=1.1e-09  Score=98.10  Aligned_cols=185  Identities=17%  Similarity=0.183  Sum_probs=130.3

Q ss_pred             EEEEEec-CCCCeEEEEEEEecC---CCCceeEEEEeecc--eeeeEEEeccCCCeEEEEEEE-eCCcceEeEEEEeecC
Q 024666           67 TTITVDE-PAPGLKSIFSFIVPD---QRSGKVELQYQHEY--AGISTGIGFTANPIVNFSGVV-GNNSVALGTDLSFDTA  139 (264)
Q Consensus        67 ~~i~~~~-~~~glk~~~~~~~p~---~~~~k~~~~y~~~~--~~~~~~v~l~~~P~~~~s~v~-~~~~~~lG~e~~yd~~  139 (264)
                      .++++.. +.+.+.+.=......   ....++...|..+.  .-+..+++  ..-.+++.... -.+++.  ..+..+..
T Consensus        26 ~r~~~~k~ls~~f~~shs~~lg~~~~~~~y~f~a~y~~~~~~~~~~~~id--~~g~l~~~~~~~~~~~~~--~k~~~~~~  101 (279)
T cd07305          26 FRLDVNKGLSPHFQVSHSLHLGSSSLTSSYQFGATYVGDKQYPFLQGDID--NDGNLNARIIHQLGDRLR--SKLQAQLQ  101 (279)
T ss_pred             EEEEEccccCcCeeEEEEEEECCCCCCCCcEeeeEEecCCCcEEEEEEeC--CCCceeEEEEeccCcceE--EEEEEEec
Confidence            3444444 666655444444211   23568889999887  65666654  22223333333 234444  44444444


Q ss_pred             CCcceeEEEEEeEEcCCeEEEEEEccCC-----CeEEEEEEEEeCCCcceeEEEEEEEe--ecCCceeEEEEEEEeeCCC
Q 024666          140 TGNFTKCNAGLSYTHTDLIASLTLNDKG-----DTLNASYYHIVSPLTNTAVGAELTHS--FSSNENTLTIGTQHALDPL  212 (264)
Q Consensus       140 ~~~~~~~~~~~~Y~~~d~~~s~~~~~~~-----~~~~~Sy~~kv~~~~~~~~g~e~~~~--~~~~~~~~~vG~~y~ld~~  212 (264)
                      ......+.+...|+++||++++++.+..     ..+.++|.|+++|+  +++|+|+.|.  ...+.+..++|++|.- ++
T Consensus       102 ~~~~~~~q~~~dy~g~d~t~~l~~~n~~~~~~sg~~~~~ylq~vt~~--l~lG~E~~~~~~~~~~~~~~~~~~rY~~-~d  178 (279)
T cd07305         102 DSKFNMSQLELDYRGDDFTASLKLANPDILNETGIYVASYLQSVTPK--LALGGELVYQRVPGNGISVLSYAARYTA-GN  178 (279)
T ss_pred             CCCceeEEEEEEEcCCceEEEEEEeCCCcccccEEEEEEEEEEccCc--EEEEEEEEEEEcCCCCceeEEEEEEEcc-CC
Confidence            4456778999999999999999976642     47899999999999  6999999999  5678899999999999 78


Q ss_pred             CeEEEEEcCCceEEEEEEEeeCCCeEEEEEEEeeccccCCCceeEEEE
Q 024666          213 TSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLAL  260 (264)
Q Consensus       213 ~~~Kakv~s~g~v~~~y~~kl~p~~~l~ls~~~d~~~~~~~~K~G~gl  260 (264)
                      .++.+++++.+.+.+.|-|+++|++.+....+.+..  .....+.+|.
T Consensus       179 ~~~s~~l~~~~~l~asY~~kvs~~l~lG~el~~~~~--~~es~~tvg~  224 (279)
T cd07305         179 WIASGQLGAQGGLHLSYYRKLSDKLQLGVELELNLR--TRESTATLGY  224 (279)
T ss_pred             EEEEEEEcCCCeEEEEEEEEcccceEeeeeeeeccc--CCceeEEEEE
Confidence            999999999999999999999997665555555543  3344444443

Tom40 forms a channel in the mitochondrial outer membrane with a pore about 1.5 to 2.5 nanometers wide. It functions as a transport channel for unfolded protein chains and forms a complex with Tom5, Tom6, Tom7, and Tom22. The primary receptors Tom20 and Tom70 recruit the unfolded precursor protein from the mitochondrial-import stimulating factor (MSF) or cytosolic Hsc70. The precursor passes through the Tom40 channel and through another channel in the inner membrane, formed by Tim23, to be finally translocated into the mitochondrial matrix. The process depends on a proton motive force across the inner membrane and requires a contact site where the outer and inner membranes come close. Tom40 is also involved in inserting outer membrane proteins into the membrane, most likely not via a lateral opening in the pore, but by transfering precursor proteins to an outer membrane sorting and assembly machinery.

>PF01459 Porin_3: Eukaryotic porin; InterPro: IPR001925 The major protein of the outer mitochondrial membrane of eukaryotes is a porin that forms a voltage-dependent anion-selective channel (VDAC) that behaves as a general diffusion pore for small hydrophilic molecules [, , , ]

Probab=99.00  E-value=1.7e-06  Score=76.54  Aligned_cols=143  Identities=19%  Similarity=0.245  Sum_probs=102.9

Q ss_pred             CCeEEEEEEE---eCCcceEeEEEEeecCCCcceeEEEEEeEEcCCeEEEEEEcc-CCCeEEEEEEEEeCCCcceeEEEE
Q 024666          114 NPIVNFSGVV---GNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLND-KGDTLNASYYHIVSPLTNTAVGAE  189 (264)
Q Consensus       114 ~P~~~~s~v~---~~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~~d~~~s~~~~~-~~~~~~~Sy~~kv~~~~~~~~g~e  189 (264)
                      .+.....+.+   ..+++.+=.++.+.... ....+.+.+.|..+++.+.+.+.+ ....+.+||.|.+.|+  +++|+|
T Consensus        73 d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~s~~~~v~~~--~~lG~e  149 (273)
T PF01459_consen   73 DNDGNLEASVRNKLSPGLKLKLSAQLSPGS-GKKSAQLEADYKGDDFNATFKVDNDNNPIFNASYVQSVTPN--LALGAE  149 (273)
T ss_dssp             TTEEEEEEEEESSTTTTEEEEEEEEE-TTT-S-EEEEEEEEEEETTEEEEEEEEESTS-EEEEEEEEEET-T--EEEEEE
T ss_pred             CCcccEEEEEecccCcceEEEEEEEEeecC-CceeeEEEEEEecCCEEEEEEEcccCCCcEEEEEEEecccc--EEEEEE
Confidence            4555444444   36775555555543322 236788889999999999999884 1248999999999999  699999


Q ss_pred             EEEeecCCcee-----EEEEEEEeeCCCCeEEEEE-cCCceEEEEEEEeeCCCeEEEEEEEeeccccCCCceeEEEEEE
Q 024666          190 LTHSFSSNENT-----LTIGTQHALDPLTSVKARV-NNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALAL  262 (264)
Q Consensus       190 ~~~~~~~~~~~-----~~vG~~y~ld~~~~~Kakv-~s~g~v~~~y~~kl~p~~~l~ls~~~d~~~~~~~~K~G~gl~l  262 (264)
                      +.|+...++..     ++++.+|.- ++.++-+++ ++...+.+.|-|++++.+.+....+.+..  .+...+.+|...
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~~~~~~~~~~~l~~sy~~k~~~~~~~g~e~~~~~~--~~~~~~~vG~~~  225 (273)
T PF01459_consen  150 ATYDLSSGKSSKYNAGLSYAARYTH-PDYTASATLSNNFGTLTASYFQKVNDKLQLGAELTYNLS--SRESTFTVGYQY  225 (273)
T ss_dssp             EEEETTTTCEEEEEEEEEEEET-----TEEEEEEE-ETTTEEEEEEEEESSTTEEEEEEEEEETT--CCEEEEEEEEEE
T ss_pred             EEEecccCCcCcceEEEEEeccccc-eeEEEEEEEcCCCCEEEEEEEEEeccceeeeeeeeeccc--CCCceEEEEEEE
Confidence            99998876555     455555554 699999999 78999999999999999999998888886  445556655544

The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. This protein contains about 280 amino acids and its sequence is composed of between 12 to 16 beta-strands that span the mitochondrial outer membrane. Yeast contains two members of this family (genes POR1 and POR2); vertebrates have at least three members (genes VDAC1, VDAC2 and VDAC3) [].; GO: 0008308 voltage-gated anion channel activity, 0006820 anion transport, 0044070 regulation of anion transport, 0055085 transmembrane transport, 0005741 mitochondrial outer membrane; PDB: 3EMN_X 2K4T_A 2JK4_A.

>cd07306 Porin3_VDAC Voltage-dependent anion channel of the outer mitochondrial membrane

Probab=98.86  E-value=2.1e-06  Score=76.84  Aligned_cols=162  Identities=15%  Similarity=0.178  Sum_probs=107.8

Q ss_pred             ceeEEEEEEEEeeCceEEEEEEcCC--CcEEEEEEEecCCCCeEEEEEEEe--cC--CCCceeEEEEeecceeeeEEEec
Q 024666           38 ELFLADVSTQLKNKNITTDVKVDTN--SNLFTTITVDEPAPGLKSIFSFIV--PD--QRSGKVELQYQHEYAGISTGIGF  111 (264)
Q Consensus        38 ~~~~g~l~~~y~~~~~~l~~~~~t~--g~l~~~i~~~~~~~glk~~~~~~~--p~--~~~~k~~~~y~~~~~~~~~~v~l  111 (264)
                      +.-+|.+++.|..+.+.+...++-.  -.+.....+.  .+++-+-.++..  ..  .....+.+.|.++++.+...+. 
T Consensus       103 ~~~s~kl~~~y~~~~~~~~~~v~~~~~p~~~~s~~~g--~~~~~~G~e~~yd~~~~~~~~~~~~~~Y~~~d~~~s~~l~-  179 (276)
T cd07306         103 GKKSGKLKAGYKHDPININADVDLNKGPLVGASAVLG--YKGFLLGAEVVYDTAKSKFTKYNFALGYTNGDFELSLKLN-  179 (276)
T ss_pred             CCceEEEEEEEecCCeeEEEEecccCCCeeEEEEEec--ccceEEEEEEEEeccCCcEeeEEEEEEEecCCeEEEEEEC-
Confidence            5567778888888776666665543  2233333332  244444444442  11  1245678899999776665553 


Q ss_pred             cCCCeEEEEEEE-eCCcceEeEEEEeecCCCcceeEEEEEeEEcC-CeEEEEEEccCCCeEEEEEEEEeCCCcceeEEEE
Q 024666          112 TANPIVNFSGVV-GNNSVALGTDLSFDTATGNFTKCNAGLSYTHT-DLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAE  189 (264)
Q Consensus       112 ~~~P~~~~s~v~-~~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~~-d~~~s~~~~~~~~~~~~Sy~~kv~~~~~~~~g~e  189 (264)
                       ....+.+|... ..+++.+|+|+.|+...+. +...+|++|.-+ ++++.+++++.+ .+.++|.|+++|++.+.+++|
T Consensus       180 -~~~~l~~S~~~kv~~~l~~g~e~~~~~~~~~-~~~~vg~~y~l~~~~~vkakv~~~g-~v~~~y~~kl~~~v~~tls~~  256 (276)
T cd07306         180 -NGKTLRGSYFHKVSPRLAVGAKVTWYSGTNE-TTFAVGGQYALDPDALVKAKVNNDG-QLGLSYQHKLRPGVTLTLSAG  256 (276)
T ss_pred             -CCCEEEEEEEEEcCCCeEEEEEEEEecCCCC-cEEEEEEEEEcCCCCEEEEEECCCc-eEEEEEEEEcCCCcEEEEEEE
Confidence             24557788777 7999999999999986554 689999999866 499999998865 899999999999954444444


Q ss_pred             EEEee-cCCceeEEEEE
Q 024666          190 LTHSF-SSNENTLTIGT  205 (264)
Q Consensus       190 ~~~~~-~~~~~~~~vG~  205 (264)
                      +.... .++...+.+|.
T Consensus       257 ~d~~~~~~~~~K~G~~l  273 (276)
T cd07306         257 FDAKNLNQGGHKFGLSL  273 (276)
T ss_pred             eeccCcCCCCCeEEEEE
Confidence            44422 11445555553

The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies.

>cd07303 Porin3 Eukaryotic porin family that forms channels in the mitochondrial outer membrane

Probab=98.67  E-value=3e-05  Score=69.44  Aligned_cols=132  Identities=14%  Similarity=0.153  Sum_probs=97.7

Q ss_pred             CCcceEeEEEEeecCCCcceeEEEEEeEEcCCeEEEEEEccCCCeEEEEEEEEeCCCcceeEEEEEEEeecCC--ceeEE
Q 024666          125 NNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSN--ENTLT  202 (264)
Q Consensus       125 ~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~~d~~~s~~~~~~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~--~~~~~  202 (264)
                      .|++.+=.++.++.... .....+...|..+++.+.+.+.+.+ .+..++.+.+.++  +.+|+|+.|+...+  +..+.
T Consensus        88 ~~glk~~~~~~~~~~~~-~~~~q~~~~y~~~~~~~~l~~~~~g-p~v~~~~~~g~~~--~~~G~e~~yd~~~~~~~~~~~  163 (274)
T cd07303          88 SRGLKSTFDSSFSPNTG-KKNAKIKTGYKRINLGCDVDFDIAG-PLIRGALVLGYEG--WLAGYQMVFETVSRVTQSNFA  163 (274)
T ss_pred             CCCeEEEEEEEECCCCc-cEEEEEeccEEcCCeeEEEEeecCC-CEEEEEEEEeecc--eEEEEEEEEeccccccccceE
Confidence            68888888888764333 3456666699999999999997644 6667889999999  69999999997432  23444


Q ss_pred             EEEEEeeCCCCeEEEEEcCCceEEEEEEEeeCCCeEEEEEEEeeccccCCCceeEEEEEEe
Q 024666          203 IGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALK  263 (264)
Q Consensus       203 vG~~y~ld~~~~~Kakv~s~g~v~~~y~~kl~p~~~l~ls~~~d~~~~~~~~K~G~gl~l~  263 (264)
                      +++.-.. ++..+-+++++.+.+.++|-||++|.+.+..-.+.+..  .++..+.+|...+
T Consensus       164 ~~y~~~y-~d~~~s~~l~~~~~l~~Sy~hkvs~~~~~g~e~~~~~~--~~e~~~~vG~~y~  221 (274)
T cd07303         164 VGYKTDY-NEFQAHTNVNDGTEFGGSIYHKVNDKLEVGVNLAATAG--NSNTRFGIAAKYQ  221 (274)
T ss_pred             EEEEccC-CCeEEEEEEcCCCeEEEEEEEEcCCceEEEEEEEeecc--CCccEEEEEEEEe
Confidence            4433222 67778899988899999999999998888877777754  4456666665543

The porin family 3 contains two sub-families that play vital roles in the mitochondrial outer membrane, a translocase for unfolded pre-proteins (Tom40) and the voltage-dependent anion channel (VDAC) that regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane.

>TIGR00989 3a0801s07tom40 mitochondrial import receptor subunit Tom40

Probab=97.82  E-value=0.00047  Score=56.47  Aligned_cols=49  Identities=22%  Similarity=0.242  Sum_probs=41.4

Q ss_pred             cceeEEEEEeEEcCCeEEEEEEccCCC--------eEEEEEEEEeCCCcceeEEEEEEEe
Q 024666          142 NFTKCNAGLSYTHTDLIASLTLNDKGD--------TLNASYYHIVSPLTNTAVGAELTHS  193 (264)
Q Consensus       142 ~~~~~~~~~~Y~~~d~~~s~~~~~~~~--------~~~~Sy~~kv~~~~~~~~g~e~~~~  193 (264)
                      +...+.+-..|+++||++++++.| ++        .+.+||.|.|.|+  +++|+|+.|.
T Consensus       105 ~~~~~Q~e~DY~G~Dft~~lk~~N-p~~~~~~~sGi~v~sylQsVTp~--LaLG~E~~yq  161 (161)
T TIGR00989       105 QPDMCQFEHDHLGDDFSASLKAIN-PSFLEKGLTGIFVGSYLQSVTPR--LGLGLEALWQ  161 (161)
T ss_pred             CCceEEEEEEecCCeEEEEEEEcC-cccccccceEEEEEeeeehhCcc--eeeeeeeEeC
Confidence            345566678999999999999987 33        6789999999999  6999999984

translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom40 proteins.

>KOG3126 consensus Porin/voltage-dependent anion-selective channel protein [Inorganic ion transport and metabolism]

Probab=97.25  E-value=0.046  Score=48.96  Aligned_cols=152  Identities=12%  Similarity=0.102  Sum_probs=92.8

Q ss_pred             ceeEEEEEEEEeeCceEEEE-EEcCCCc-E--EEEEEEecCCCCeEEEEEEEecCCCCceeEEEEeecceeeeEEEeccC
Q 024666           38 ELFLADVSTQLKNKNITTDV-KVDTNSN-L--FTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTA  113 (264)
Q Consensus        38 ~~~~g~l~~~y~~~~~~l~~-~~~t~g~-l--~~~i~~~~~~~glk~~~~~~~p~~~~~k~~~~y~~~~~~~~~~v~l~~  113 (264)
                      ++.+|-++..|..+-..+.. ..+..+- +  ++.+.++++.-|....+++..-.-....+.+.|..+++.+...++  .
T Consensus       108 ~~ks~Klk~~y~~~~~~~~~~~~~~~~P~i~~s~v~g~~g~l~G~~~~fDt~~~~~t~~n~~lgy~~~d~~l~~~~n--n  185 (281)
T KOG3126|consen  108 GKKSGKLKLSYARDHFNLGADDFLTANPLILGSLVLGHEGWLLGYETTFDTASGKLTKYNAALGYTTEDFTLHLNLN--N  185 (281)
T ss_pred             cccceeeecccccccceeeeccccccCCeEEEEEEecccceEEEEeEEEeccCCcEeeEEEEEEeecCCcEEEEEec--c
Confidence            34455577766655433332 1111111 1  333333434445555555541112344578888888766655442  2


Q ss_pred             CCeEEEEEEE-eCCcceEeEEEEeecCCCcceeEEEEEeEEc-CCeEEEEEEccCCCeEEEEEEEEeCCCcceeEEEEEE
Q 024666          114 NPIVNFSGVV-GNNSVALGTDLSFDTATGNFTKCNAGLSYTH-TDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELT  191 (264)
Q Consensus       114 ~P~~~~s~v~-~~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~-~d~~~s~~~~~~~~~~~~Sy~~kv~~~~~~~~g~e~~  191 (264)
                      .-...+|.-+ ....+..|.++.|..... -+..+++.+|.- ++..+.+++++. ..+.+.|-|++.|+.++.+++|+.
T Consensus       186 ~~~~~~s~yq~v~~~~~~~~~~~~~~~~~-~~~~~igt~Y~lD~~t~VkAKVnn~-g~~gl~yq~~lrp~i~~t~s~~~d  263 (281)
T KOG3126|consen  186 GTEFLASIYQRVNEKLETGANAEWIAGSS-NTRFTIGTKYALDPDTSVKAKVNNA-GLAGLGYQQTLRPGIKVTLSAEFD  263 (281)
T ss_pred             cchhhhhhhhhhcchheeeeeEEEeecCC-ccEEEEEEEeccCCCceeeeeecCC-ceeeEEEEEecCCCcEEEEEEEEe
Confidence            2222322222 456689999999998765 568999999975 578999999995 599999999999996565666555


Q ss_pred             Ee
Q 024666          192 HS  193 (264)
Q Consensus       192 ~~  193 (264)
                      ..
T Consensus       264 ~~  265 (281)
T KOG3126|consen  264 GK  265 (281)
T ss_pred             cc
Confidence            54

>KOG3296 consensus Translocase of outer mitochondrial membrane complex, subunit TOM40 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.27  E-value=0.0028  Score=57.18  Aligned_cols=134  Identities=17%  Similarity=0.176  Sum_probs=92.9

Q ss_pred             CCcceEeEEEEeecCC------------CcceeEEEEEeEEcCCeEEEEEEccC----CCeEEEEEEEEeCCCcceeEEE
Q 024666          125 NNSVALGTDLSFDTAT------------GNFTKCNAGLSYTHTDLIASLTLNDK----GDTLNASYYHIVSPLTNTAVGA  188 (264)
Q Consensus       125 ~~~~~lG~e~~yd~~~------------~~~~~~~~~~~Y~~~d~~~s~~~~~~----~~~~~~Sy~~kv~~~~~~~~g~  188 (264)
                      -..-.+.+++.|+...            ++...+.....|+..|+++++...+-    -..+.++|.|.+.++  +++|+
T Consensus       104 D~~Gslna~l~~~l~~~Lr~K~~~q~~~~k~ve~q~~~e~~g~d~t~~~~~~n~~~~~sgi~v~~~lqsvT~~--LsLG~  181 (308)
T KOG3296|consen  104 DNDGSLNARLIHQLTDNLRSKVALQIQQSKEVESQVTGEYRGRDYTLTLPLGNPDLGESGIYVASYLQSVTPR--LSLGG  181 (308)
T ss_pred             CCCCchhheeecccchhhHHHHHHHhcchhhhccccccceecccccccccccCcccccchHHHHHHHhhhccc--ccccc
Confidence            4445777788776653            23445777889999999999987642    124678999999999  69999


Q ss_pred             EEEEee--cCCceeEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEeeCCCeEEEEEEEeeccccCCCceeEEEEEE
Q 024666          189 ELTHSF--SSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALAL  262 (264)
Q Consensus       189 e~~~~~--~~~~~~~~vG~~y~ld~~~~~Kakv~s~g~v~~~y~~kl~p~~~l~ls~~~d~~~~~~~~K~G~gl~l  262 (264)
                      |+.|..  ...+..+++++||.. .....-+-....|.-+. |-+|+.+++......+.|..--+...-++.++.+
T Consensus       182 El~~~~~~~~~~s~ls~a~RY~~-~~~~~~~t~g~~g~~~~-y~~r~~~~~~~~ve~~~~~~~~~~~~t~a~~~~l  255 (308)
T KOG3296|consen  182 ELLYQRRPGPEESGLSYAGRYEH-SNWDATVTLGQQGLTGT-YYQRAVEKLQMGVEFETNTRLQSTDVTAAYGYDL  255 (308)
T ss_pred             eeEeccCCCccccceeeeeeeee-cceeeEEecccccceeh-hhhhhhhhhccceeEeeecccCCcceEEEEEeec
Confidence            999998  457889999999999 45555566666655444 4456667777777777666421223455555543

>PF10082 DUF2320: Uncharacterized protein conserved in bacteria (DUF2320); InterPro: IPR018759 This domain has no known function

Probab=92.61  E-value=8.4  Score=35.55  Aligned_cols=46  Identities=13%  Similarity=0.132  Sum_probs=36.4

Q ss_pred             EEcCCceEEEEEEEeeCCCeEEEEEEEeeccccC------CCceeEEEEEEe
Q 024666          218 RVNNYGRASALIQHEWRPKSLFTISGEVDTRAIE------KSAKIGLALALK  263 (264)
Q Consensus       218 kv~s~g~v~~~y~~kl~p~~~l~ls~~~d~~~~~------~~~K~G~gl~l~  263 (264)
                      +-|+...+++.+..++++.+.+.++.....++-+      ..+.+++++.++
T Consensus       329 r~D~~~~~~~~~~y~~~r~~~~~~~y~~~~~~S~~~~~~y~~n~v~l~l~~~  380 (381)
T PF10082_consen  329 REDDTYSAGLGLTYRLNRWLSLSAGYRYEDRDSNIPSYDYDRNRVGLGLTYQ  380 (381)
T ss_pred             ceeeEEEEEEEEEEEecCCEEEEEEEEEEEeeCCCCCCceEeEEEEEEEEEE
Confidence            7888888999999999999888888877766432      347888888774

>PRK10716 long-chain fatty acid outer membrane transporter; Provisional

Probab=89.18  E-value=21  Score=34.06  Aligned_cols=75  Identities=15%  Similarity=0.028  Sum_probs=48.0

Q ss_pred             CCeEEEEEEEEeCCCcceeEEEEEEEeecCCceeEEEEEEEeeCCC--CeEEEEEcCCceEEEEEEEeeCCCeEEEEEEE
Q 024666          167 GDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPL--TSVKARVNNYGRASALIQHEWRPKSLFTISGE  244 (264)
Q Consensus       167 ~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~y~ld~~--~~~Kakv~s~g~v~~~y~~kl~p~~~l~ls~~  244 (264)
                      ++.+..+..|+++|+  +.+.+.+.|..=+.=..+.+  .+. +..  ...--.-++.+.+++..++++++.++|..+..
T Consensus       286 P~~~~lg~~~~~~~~--~~l~~d~~wt~WS~~~~l~i--~~~-~g~~~~~~~~~w~D~w~~~~G~~Y~~n~~l~LRaG~~  360 (435)
T PRK10716        286 PEMWEVSGYNRVAPQ--WAIHYSLAYTSWSQFQELKA--TSS-NGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIA  360 (435)
T ss_pred             CcEEEEEeEEecCCc--EEEEEEEEEeeecccceEEE--EeC-CCcceecccccceeeeEEEeeEEEECCCCeEEEEeeE
Confidence            567899999999999  58888888863222111121  110 001  01111246677788888888888888888888


Q ss_pred             ee
Q 024666          245 VD  246 (264)
Q Consensus       245 ~d  246 (264)
                      .|
T Consensus       361 yd  362 (435)
T PRK10716        361 FD  362 (435)
T ss_pred             ec
Confidence            77

>PF11854 DUF3374: Protein of unknown function (DUF3374); InterPro: IPR020016 Members of this protein family are integral proteins of the bacterial outer membrane, associated with multi-haem c-type cytochromes involved in electron transfer [, ]

Probab=85.97  E-value=33  Score=34.56  Aligned_cols=69  Identities=13%  Similarity=0.155  Sum_probs=37.2

Q ss_pred             CCcceEeEEEEeecCCCcceeEEEEEeEEcCCeEEEEEEccCCCeEEEEEEEE--eCCCcceeEEEEEEEeecCCcee
Q 024666          125 NNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHI--VSPLTNTAVGAELTHSFSSNENT  200 (264)
Q Consensus       125 ~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~~d~~~s~~~~~~~~~~~~Sy~~k--v~~~~~~~~g~e~~~~~~~~~~~  200 (264)
                      .+++.+-+-+.+|.-.....   -...+..++|  ...+.++...+.+.+-+.  +.++  +.+|++.+|.....++.
T Consensus       484 ~~~l~~~af~~~q~~~s~Q~---gs~~~~~~~W--~~~~~D~~~~~G~G~~~~~l~~~k--L~lg~dYsys~~~s~~~  554 (637)
T PF11854_consen  484 SDDLSLYAFYNQQWIDSDQA---GSQNFSTPDW--TSDTEDKVTTVGAGFSYQGLMDDK--LSLGLDYSYSDSDSDTD  554 (637)
T ss_pred             CCCeEEEEEEEeEeehhhhc---cccCccCCCc--cccccceeEEEEeceEeecccCcc--EEEeeeEEEecCccceE
Confidence            55666665555554322111   0112234455  334455555666655544  6777  69999999986644433

The MtrB protein of Shewanella oneidensis MR-1 (SO1776) has been shown to form a complex with 1:1:1 stochiometry with the small, periplasmic decahaem cytochrome MtrA and large, surface-exposed decahaem cytochrome MtrC.

>PF12519 DUF3722: Protein of unknown function (DUF3722) ; InterPro: IPR022197 This family of proteins is found in eukaryotes

Probab=85.71  E-value=2.1  Score=37.95  Aligned_cols=65  Identities=22%  Similarity=0.381  Sum_probs=52.4

Q ss_pred             CCcceEeEEEEeecCCCcceeEEEEEeEEc------CCeEEEEEEccCCCeEEEEEEEEeCCCcceeEEEEEEE
Q 024666          125 NNSVALGTDLSFDTATGNFTKCNAGLSYTH------TDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTH  192 (264)
Q Consensus       125 ~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~------~d~~~s~~~~~~~~~~~~Sy~~kv~~~~~~~~g~e~~~  192 (264)
                      ...|++|+|+-|-.-.+. -..+.|+||.+      ..+++++++++...-+..+|--|.++.  +++..++.+
T Consensus       189 ~~r~S~GaE~yys~~~ks-~G~STglRf~Tlp~~tg~PlTlTlt~NPl~GhiSstYs~k~s~~--~a~~SrfdF  259 (260)
T PF12519_consen  189 YGRFSAGAELYYSALNKS-PGCSTGLRFCTLPAHTGKPLTLTLTLNPLMGHISSTYSVKASPN--SAFCSRFDF  259 (260)
T ss_pred             cceEeeccEEEEEeeccC-CcccceeEEEecCCCCCCCeEEEEEeccccccchheeeeeccCC--ceEEeeccc
Confidence            348999999988765443 36888999964      469999999998778999999999999  688877654

Proteins in this family are typically between 415 and 473 amino acids in length.

>COG2067 FadL Long-chain fatty acid transport protein [Lipid metabolism]

Probab=84.90  E-value=25  Score=33.73  Aligned_cols=77  Identities=10%  Similarity=-0.092  Sum_probs=50.2

Q ss_pred             CCeEEEEEEEEeCCCcceeEEEEEEEeecCCceeEEEEEEEeeCCCCeEEEEE---cCCceEEEEEEEeeCCCeEEEEEE
Q 024666          167 GDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARV---NNYGRASALIQHEWRPKSLFTISG  243 (264)
Q Consensus       167 ~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~y~ld~~~~~Kakv---~s~g~v~~~y~~kl~p~~~l~ls~  243 (264)
                      ++.+..+++|+++|+  +++...+.|..=++=..+.+=..   +....+....   .+.+.+++.-+++++|.+++..+-
T Consensus       285 P~~~el~~~~~~~d~--w~~~~s~~wT~WS~f~~l~~~~~---~~~~~~~~~~~~yrD~wt~a~G~~Y~~nd~~tlragi  359 (440)
T COG2067         285 PASAELSGQHKVADQ--WAIHGSVKWTDWSSFDKLDFVFT---FGKTLFAKTEDGYRDTWTVALGTTYKFNDQWTLRAGI  359 (440)
T ss_pred             CcEEEEeeeeccCCC--eEEEEEEEEeeccCCceEEEEEc---CCCccccccccccccccEEeeeceeEcCccceEeeee
Confidence            567899999999999  48999999975433222222222   2333343333   366777777777777777777776


Q ss_pred             Eeecc
Q 024666          244 EVDTR  248 (264)
Q Consensus       244 ~~d~~  248 (264)
                      ..|..
T Consensus       360 ayD~s  364 (440)
T COG2067         360 AYDQS  364 (440)
T ss_pred             eecCC
Confidence            66653

>COG2067 FadL Long-chain fatty acid transport protein [Lipid metabolism]

Probab=84.51  E-value=28  Score=33.43  Aligned_cols=96  Identities=16%  Similarity=0.110  Sum_probs=52.5

Q ss_pred             EEEEEE-eCCcceEeEEEEeecCCCcceeEEEEEeEEcCCeEEEEE-EccCCCeEEEEEEEEeCCCcceeEEEEEEEeec
Q 024666          118 NFSGVV-GNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLT-LNDKGDTLNASYYHIVSPLTNTAVGAELTHSFS  195 (264)
Q Consensus       118 ~~s~v~-~~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~~d~~~s~~-~~~~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~  195 (264)
                      +.+... ..++|++.+.+.|-.= .++.+..+...-....+.-... ..| +-.+....=|+++|+|  ++.+-+.|+..
T Consensus       289 el~~~~~~~d~w~~~~s~~wT~W-S~f~~l~~~~~~~~~~~~~~~~~yrD-~wt~a~G~~Y~~nd~~--tlragiayD~s  364 (440)
T COG2067         289 ELSGQHKVADQWAIHGSVKWTDW-SSFDKLDFVFTFGKTLFAKTEDGYRD-TWTVALGTTYKFNDQW--TLRAGIAYDQS  364 (440)
T ss_pred             EEeeeeccCCCeEEEEEEEEeec-cCCceEEEEEcCCCcccccccccccc-ccEEeeeceeEcCccc--eEeeeeeecCC
Confidence            444444 5888888888887321 1333343321200111111111 344 3456677778888886  44555556633


Q ss_pred             -------------CCceeEEEEEEEeeCCCCeEEE
Q 024666          196 -------------SNENTLTIGTQHALDPLTSVKA  217 (264)
Q Consensus       196 -------------~~~~~~~vG~~y~ld~~~~~Ka  217 (264)
                                   .....+++|..|+++++..+.+
T Consensus       365 ~s~~~~~~~~iPd~Dr~~~s~G~~Y~~t~n~~vd~  399 (440)
T COG2067         365 PSPAQNRSISIPDTDRWWLSLGTTYKFTKNLEVDA  399 (440)
T ss_pred             CCcccccccccCCCCcEEEeCccEEecCCCeEEEE
Confidence                         2234678888888887776654

>PF03349 Toluene_X: Outer membrane protein transport protein (OMPP1/FadL/TodX); InterPro: IPR005017 This family includes TodX from Pseudomonas putida (strain F1/ATCC 700007) Q51971 from SWISSPROT and TbuX from Burkholderia pickettii (Ralstonia pickettii) (Pseudomonas pickettii) PKO1 Q9RBW8 from SWISSPROT

Probab=82.52  E-value=42  Score=31.28  Aligned_cols=95  Identities=8%  Similarity=-0.044  Sum_probs=56.8

Q ss_pred             CCeEEEEEEEEeCCCcceeEEEEEEEeecCC-ceeEEEEEEEee---CCCCeEEEEEcCCceEEEEEEEeeCCCeEEEEE
Q 024666          167 GDTLNASYYHIVSPLTNTAVGAELTHSFSSN-ENTLTIGTQHAL---DPLTSVKARVNNYGRASALIQHEWRPKSLFTIS  242 (264)
Q Consensus       167 ~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~-~~~~~vG~~y~l---d~~~~~Kakv~s~g~v~~~y~~kl~p~~~l~ls  242 (264)
                      +..+.+++.|+++++  +.+.+++.|..=+. +...........   .....+.-..++.+.+.+..|.+++|.++|..+
T Consensus       269 P~~~~~g~~~~~~~~--~~l~~d~~~~~WS~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~lG~~Y~~~~~l~lr~G  346 (427)
T PF03349_consen  269 PASLSLGVAYRFTDK--LLLSADYEWTDWSSFDNLYNDQFTFANGNGSTNNNIPFNWKDTWVYRLGAEYKFNDKLTLRAG  346 (427)
T ss_dssp             -EEEEEEEEEESSSS--EEEEEEEEEEEGGG-SCEEEEEEEETTECTEEEEEEE---EEEEEEEEEEEEESSSSEEEEEE
T ss_pred             ceeEEEEEEEecCCC--EEEEEEEEEEEhhhhhhhcccccccccccccccccCCCCccchheeeeeeEEEcCcCEEEEEE
Confidence            567999999999999  58899999864221 111111111110   012334445566677888888888888888888


Q ss_pred             EEeeccccC-----------CCceeEEEEEEe
Q 024666          243 GEVDTRAIE-----------KSAKIGLALALK  263 (264)
Q Consensus       243 ~~~d~~~~~-----------~~~K~G~gl~l~  263 (264)
                      ...|..-.+           ..+-+++|+.++
T Consensus       347 ~~y~~sp~~~~~~~~~~p~~~~~~~s~G~~y~  378 (427)
T PF03349_consen  347 YAYDSSPIPDETRDPLLPDTDRHWLSAGAGYR  378 (427)
T ss_dssp             EEEEE-SS-CCC-BSSS--SSEEEEEEEEEEE
T ss_pred             EEEeccccCccccchhhccCCcEEEEEeeEEE
Confidence            887764321           235666666554

These are membrane proteins of uncertain function that are involved in toluene catabolism. Related proteins involved in the degradation of similar aromatic hydrocarbons are also in this family, such as CymD O33458 from SWISSPROT.; PDB: 2R88_A 1T16_B 2R4N_B 2R4P_B 3PGU_A 2R4L_A 3DWN_B 2R4O_A 3PF1_B 3PGS_A ....

>PF03349 Toluene_X: Outer membrane protein transport protein (OMPP1/FadL/TodX); InterPro: IPR005017 This family includes TodX from Pseudomonas putida (strain F1/ATCC 700007) Q51971 from SWISSPROT and TbuX from Burkholderia pickettii (Ralstonia pickettii) (Pseudomonas pickettii) PKO1 Q9RBW8 from SWISSPROT

Probab=81.32  E-value=47  Score=30.98  Aligned_cols=136  Identities=10%  Similarity=0.047  Sum_probs=68.3

Q ss_pred             Ce-EEEEEEE-eCCcceEeEEEEee-cCCCcceeEEEEEeEEc----CCeEEEEEEccCCCeEEEEEEEEeCCCcceeEE
Q 024666          115 PI-VNFSGVV-GNNSVALGTDLSFD-TATGNFTKCNAGLSYTH----TDLIASLTLNDKGDTLNASYYHIVSPLTNTAVG  187 (264)
Q Consensus       115 P~-~~~s~v~-~~~~~~lG~e~~yd-~~~~~~~~~~~~~~Y~~----~d~~~s~~~~~~~~~~~~Sy~~kv~~~~~~~~g  187 (264)
                      |. +.++.-+ ..++|.+.+.+.|. .++-+.. ..-.+....    .+........|. -.+.+..-++++|+|.+.+|
T Consensus       269 P~~~~~g~~~~~~~~~~l~~d~~~~~WS~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~lG~~Y~~~~~l~lr~G  346 (427)
T PF03349_consen  269 PASLSLGVAYRFTDKLLLSADYEWTDWSSFDNL-YNDQFTFANGNGSTNNNIPFNWKDT-WVYRLGAEYKFNDKLTLRAG  346 (427)
T ss_dssp             -EEEEEEEEEESSSSEEEEEEEEEEEGGG-SCE-EEEEEEETTECTEEEEEEE---EEE-EEEEEEEEEESSSSEEEEEE
T ss_pred             ceeEEEEEEEecCCCEEEEEEEEEEEhhhhhhh-cccccccccccccccccCCCCccch-heeeeeeEEEcCcCEEEEEE
Confidence            44 3444444 47889998888874 2221111 111112211    122222333442 35667777889998655555


Q ss_pred             EEEEEeec-----------CCceeEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEeeCCCeEEEEEE---EeeccccCCC
Q 024666          188 AELTHSFS-----------SNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISG---EVDTRAIEKS  253 (264)
Q Consensus       188 ~e~~~~~~-----------~~~~~~~vG~~y~ld~~~~~Kakv~s~g~v~~~y~~kl~p~~~l~ls~---~~d~~~~~~~  253 (264)
                      .......-           .....+++|+.|+++++          ..+.++|++......+.....   .++...-...
T Consensus       347 ~~y~~sp~~~~~~~~~~p~~~~~~~s~G~~y~~~~~----------~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (427)
T PF03349_consen  347 YAYDSSPIPDETRDPLLPDTDRHWLSAGAGYRFSKN----------LSLDFAYQYIFYNDVTINSTSDNGGLNGTYDGSA  416 (427)
T ss_dssp             EEEEE-SS-CCC-BSSS--SSEEEEEEEEEEESSSS----------EEEEEEEEEEEEEEEEEEEB--GTCEEEEEEEEE
T ss_pred             EEEeccccCccccchhhccCCcEEEEEeeEEEcCCC----------eEEEEEEEEEEccCcccccccccCceEEEEEEEE
Confidence            54333321           24567899999998533          566667776665555544432   1122100235


Q ss_pred             ceeEEEEEE
Q 024666          254 AKIGLALAL  262 (264)
Q Consensus       254 ~K~G~gl~l  262 (264)
                      +=+|+++..
T Consensus       417 ~~~~l~~~y  425 (427)
T PF03349_consen  417 HVFGLSVSY  425 (427)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEe
Confidence            677777654

These are membrane proteins of uncertain function that are involved in toluene catabolism. Related proteins involved in the degradation of similar aromatic hydrocarbons are also in this family, such as CymD O33458 from SWISSPROT.; PDB: 2R88_A 1T16_B 2R4N_B 2R4P_B 3PGU_A 2R4L_A 3DWN_B 2R4O_A 3PF1_B 3PGS_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	264
2jk4_A	294	Structure Of The Human Voltage-Dependent Anion Chan		9e-07
2k4t_A	291	Solution Structure Of Human Vdac-1 In Ldao Micelles		9e-07
3emn_X	295	The Crystal Structure Of Mouse Vdac1 At 2.3 A Resol		2e-06

>pdb|2JK4|A Chain A, Structure Of The Human Voltage-Dependent Anion Channel Length = 294

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 90/213 (42%), Gaps = 11/213 (5%)
Query: 58  KVDTNSNLFTTITV-DEPAPGLKSIF-SFIVPD--QRSGKVELQYQHEYAGISTGIGFT- 112
           K +T++ L T ITV D+ A GLK  F S   P+  +++ K++  Y+ E+  +   + F  
Sbjct: 77  KWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDMDFDI 136
Query: 113 ANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNA 172
           A P               G  ++F+TA    T+ N  + Y   +      +ND G     
Sbjct: 137 AGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQLHTNVND-GTEFGG 195
Query: 173 SYYHIVSPLTNTAVGAELTHSFSSNENT-LTIGTQHALDPLTSVKARVNNYGRASALIQH 231
           S Y  V+    TAV    T   + N NT   I  ++ +DP     A+VNN          
Sbjct: 196 SIYQKVNKKLETAVNLAWT---AGNSNTRFGIAAKYQIDPDACFSAKVNNSSLIGLGYTQ 252
Query: 232 EWRPKSLFTISGEVDTRAIEKSA-KIGLALALK 263
             +P    T+S  +D + +     K+GL L  +
Sbjct: 253 TLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQ 285

>pdb|2K4T|A Chain A, Solution Structure Of Human Vdac-1 In Ldao Micelles Length = 291

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 90/213 (42%), Gaps = 11/213 (5%)
Query: 58  KVDTNSNLFTTITV-DEPAPGLKSIF-SFIVPD--QRSGKVELQYQHEYAGISTGIGFT- 112
           K +T++ L T ITV D+ A GLK  F S   P+  +++ K++  Y+ E+  +   + F  
Sbjct: 74  KWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDMDFDI 133
Query: 113 ANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNA 172
           A P               G  ++F+TA    T+ N  + Y   +      +ND G     
Sbjct: 134 AGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQLHTNVND-GTEFGG 192
Query: 173 SYYHIVSPLTNTAVGAELTHSFSSNENT-LTIGTQHALDPLTSVKARVNNYGRASALIQH 231
           S Y  V+    TAV    T   + N NT   I  ++ +DP     A+VNN          
Sbjct: 193 SIYQKVNKKLETAVNLAWT---AGNSNTRFGIAAKYQIDPDACFSAKVNNSSLIGLGYTQ 249
Query: 232 EWRPKSLFTISGEVDTRAIEKSA-KIGLALALK 263
             +P    T+S  +D + +     K+GL L  +
Sbjct: 250 TLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQ 282

>pdb|3EMN|X Chain X, The Crystal Structure Of Mouse Vdac1 At 2.3 A Resolution Length = 295

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 90/213 (42%), Gaps = 11/213 (5%)
Query: 58  KVDTNSNLFTTITV-DEPAPGLKSIF-SFIVPD--QRSGKVELQYQHEYAGISTGIGFT- 112
           K +T++ L T ITV D+ A GLK  F S   P+  +++ K++  Y+ E+  +   + F  
Sbjct: 86  KWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDVDFDI 145
Query: 113 ANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNA 172
           A P               G  ++F+T+    T+ N  + Y   +      +ND G     
Sbjct: 146 AGPSIRGALVLGYEGWLAGYQMNFETSKSRVTQSNFAVGYKTDEFQLHTNVND-GTEFGG 204
Query: 173 SYYHIVSPLTNTAVGAELTHSFSSNENT-LTIGTQHALDPLTSVKARVNNYGRASALIQH 231
           S Y  V+    TAV    T   + N NT   I  ++ +DP     A+VNN          
Sbjct: 205 SIYQKVNKKLETAVNLAWT---AGNSNTRFGIAAKYQVDPDACFSAKVNNSSLIGLGYTQ 261
Query: 232 EWRPKSLFTISGEVDTRAIEKSA-KIGLALALK 263
             +P    T+S  +D + +     K+GL L  +
Sbjct: 262 TLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQ 294

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	264
3emn_X	295	Voltage-dependent anion-selective channel protein;	8e-60

>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A Length = 295

 Score =  190 bits (484), Expect = 8e-60
 Identities = 57/246 (23%), Positives = 99/246 (40%), Gaps = 13/246 (5%)

Query: 28  AITSSGVKKGELFLADVSTQLKNK----NITTDVKVDTNSNLFTTITV-DEPAPGLKSIF 82
             TSSG    E    + S + K +     +T   K +T++ L T ITV D+ A GLK  F
Sbjct: 52  EFTSSGSANTETTKVNGSLETKYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTF 111

Query: 83  SFIVPDQ---RSGKVELQYQHEYAGISTGIGFT-ANPIVNFSGVVGNNSVALGTDLSFDT 138
                     ++ K++  Y+ E+  +   + F  A P +  + V+G      G  ++F+T
Sbjct: 112 DSSFSPNTGKKNAKIKTGYKREHINLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFET 171

Query: 139 ATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNE 198
           +    T+ N  + Y   +      +ND G     S Y  V+          L  +  ++ 
Sbjct: 172 SKSRVTQSNFAVGYKTDEFQLHTNVND-GTEFGGSIYQKVNK--KLETAVNLAWTAGNSN 228

Query: 199 NTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSA-KIG 257
               I  ++ +DP     A+VNN            +P    T+S  +D + +     K+G
Sbjct: 229 TRFGIAAKYQVDPDACFSAKVNNSSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLG 288

Query: 258 LALALK 263
           L L  +
Sbjct: 289 LGLEFQ 294

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	264
3emn_X	295	Voltage-dependent anion-selective channel protein;	100.0
3emn_X	295	Voltage-dependent anion-selective channel protein;	98.48
3bs0_A	439	TODX; beta barrel, outer membrane protein, transpo	90.81
3bry_A	441	TBUX; beta barrel, outer membrane protein, transpo	87.24
3dwo_X	451	Probable outer membrane protein; beta barrel; HET:	86.07
3pgu_A	427	Long-chain fatty acid transport protein; outer mem	85.51
3nsg_A	341	Outer membrane protein F; porin, beta barrel, beta	80.5

>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A

Probab=100.00  E-value=1.6e-56  Score=400.78  Aligned_cols=239  Identities=23%  Similarity=0.347  Sum_probs=228.6

Q ss_pred             ecceEEEEEeeeeCC--ceeEEEEEEEEeeCc--eEEEEEEcCCCcEEEEEEEec-CCCCeEEEEEEEe-cC--CCCcee
Q 024666           23 VMHLQAITSSGVKKG--ELFLADVSTQLKNKN--ITTDVKVDTNSNLFTTITVDE-PAPGLKSIFSFIV-PD--QRSGKV   94 (264)
Q Consensus        23 ~~~~v~~~s~~~~~~--~~~~g~l~~~y~~~~--~~l~~~~~t~g~l~~~i~~~~-~~~glk~~~~~~~-p~--~~~~k~   94 (264)
                      .++||+|+++|.+++  ++++|++|++|+.++  ++++++|+|+|+|.++|++++ ++||||+++++++ |+  .+++|+
T Consensus        47 s~~gv~ft~~g~~~~~~~~v~g~le~kyk~~~~g~t~~~kw~t~n~l~t~i~~~~~l~~Glk~~~~~~~~P~~~~ks~kl  126 (295)
T 3emn_X           47 SENGLEFTSSGSANTETTKVNGSLETKYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKI  126 (295)
T ss_dssp             CSSEEEEEEEEEEETTTCCEEEEEEEEEEETTTTEEEEEEEETTSCEEEEEEEESSSSTTEEEEEEEEEETTTTEEEEEE
T ss_pred             cCCCEEEEEEEEecCCCCceeeEEEEEEEecCCcEEEEEEEeCCCcEEEEEEEccccCCceEEEEEEEECCCCCCcceEE
Confidence            459999999998877  999999999999986  899999999999999999999 9999999999995 76  478999


Q ss_pred             EEEEeecceeeeEEEecc-CCCeEEEEEEEeCCcceEeEEEEeecCCCcceeEEEEEeEEcCCeEEEEEEccCCCeEEEE
Q 024666           95 ELQYQHEYAGISTGIGFT-ANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNAS  173 (264)
Q Consensus        95 ~~~y~~~~~~~~~~v~l~-~~P~~~~s~v~~~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~~d~~~s~~~~~~~~~~~~S  173 (264)
                      +++|+||+++++++++++ ++|.++.++|+++++|++|+|+.||+.++++++|+++++|+.+||+++++++| ++.+++|
T Consensus       127 ~~~Y~~~~~~~~~~v~l~~~~P~i~~s~v~g~~~~~~G~e~~yd~~~~~~t~~n~~~gY~~~d~~~s~~l~~-~~~~~aS  205 (295)
T 3emn_X          127 KTGYKREHINLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETSKSRVTQSNFAVGYKTDEFQLHTNVND-GTEFGGS  205 (295)
T ss_dssp             EEEEEETTEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEETTTTEEEEEEEEEEEECSSEEEEEEEET-TTEEEEE
T ss_pred             EEEEEcCCEeEEEEEEeccCCCEEEEEEEEeeCCEEEEEEEEEEeCCCCeeeEEEEEEEcCCCEEEEEEECC-CCeEEEE
Confidence            999999999999999995 79999999999999999999999999999999999999999999999999998 7899999


Q ss_pred             EEEEeCCCcceeEEEEEEEeecCCceeEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEeeCCCeEEEEEEEeeccccC-C
Q 024666          174 YYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIE-K  252 (264)
Q Consensus       174 y~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~y~ld~~~~~Kakv~s~g~v~~~y~~kl~p~~~l~ls~~~d~~~~~-~  252 (264)
                      ||||++|+  +++|+|++|+.+.+++.++||+||++|+++++|||||++|.++++|||+|+|++++++|++||+++++ +
T Consensus       206 y~qkvs~~--~~~g~e~~~~~~~~~~~~tvG~ky~ld~~~~vKakvn~~g~v~~~y~~kl~p~v~ltls~~iD~~~l~~~  283 (295)
T 3emn_X          206 IYQKVNKK--LETAVNLAWTAGNSNTRFGIAAKYQVDPDACFSAKVNNSSLIGLGYTQTLKPGIKLTLSALLDGKNVNAG  283 (295)
T ss_dssp             EEEECSSS--EEEEEEEEEETTEEEEEEEEEEEECCSSSEEEEEEEETTSEEEEEEEEEEETTEEEEEEEEEESSCTTTS
T ss_pred             EEEECCCc--eEEEEEEEEeccCCCcEEEEEEEEEcCCCCEEEEEECCCCEEEEEEEEecCCCcEEEEEEEECccccCCC
Confidence            99999999  89999999999889999999999999999999999999999999999999999999999999999884 7


Q ss_pred             CceeEEEEEEeC
Q 024666          253 SAKIGLALALKP  264 (264)
Q Consensus       253 ~~K~G~gl~l~~  264 (264)
                      .||||++|+||+
T Consensus       284 ~~K~Gl~l~l~~  295 (295)
T 3emn_X          284 GHKLGLGLEFQA  295 (295)
T ss_dssp             CCEEEEEEEEEC
T ss_pred             CCcEEEEEEEeC
Confidence            899999999996

>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A

Probab=98.48  E-value=0.00037  Score=61.81  Aligned_cols=179  Identities=13%  Similarity=0.109  Sum_probs=117.3

Q ss_pred             CCeEEEEEEE-ecC--CCCceeEEEEeecceeeeEEEeccCCCeEEEEEEE---eCCcceEeEEEEeecCCCcceeEEEE
Q 024666           76 PGLKSIFSFI-VPD--QRSGKVELQYQHEYAGISTGIGFTANPIVNFSGVV---GNNSVALGTDLSFDTATGNFTKCNAG  149 (264)
Q Consensus        76 ~glk~~~~~~-~p~--~~~~k~~~~y~~~~~~~~~~v~l~~~P~~~~s~v~---~~~~~~lG~e~~yd~~~~~~~~~~~~  149 (264)
                      .|+.++.... .|+  .-.+.++.+|+....++..+......-.+.....+   ..|++-+-.+..+....+ -....+.
T Consensus        49 ~gv~ft~~g~~~~~~~~v~g~le~kyk~~~~g~t~~~kw~t~n~l~t~i~~~~~l~~Glk~~~~~~~~P~~~-~ks~kl~  127 (295)
T 3emn_X           49 NGLEFTSSGSANTETTKVNGSLETKYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTG-KKNAKIK  127 (295)
T ss_dssp             SEEEEEEEEEEETTTCCEEEEEEEEEEETTTTEEEEEEEETTSCEEEEEEEESSSSTTEEEEEEEEEETTTT-EEEEEEE
T ss_pred             CCEEEEEEEEecCCCCceeeEEEEEEEecCCcEEEEEEEeCCCcEEEEEEEccccCCceEEEEEEEECCCCC-CcceEEE
Confidence            3445444444 232  22567888888887655554433333333333333   477887777777765433 2357777


Q ss_pred             EeEEcCCeEEEEEEcc--CCCeEEEEEEEEeCCCcceeEEEEEEEeecCCc-eeEEEEEEEeeCCCCeEEEEEcCCceEE
Q 024666          150 LSYTHTDLIASLTLND--KGDTLNASYYHIVSPLTNTAVGAELTHSFSSNE-NTLTIGTQHALDPLTSVKARVNNYGRAS  226 (264)
Q Consensus       150 ~~Y~~~d~~~s~~~~~--~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~-~~~~vG~~y~ld~~~~~Kakv~s~g~v~  226 (264)
                      +.|..+++.+...+.-  .+..+..|..- -.+.  +.+|+|+.|+...++ +..++|.+|.- ++..+-+++++...+.
T Consensus       128 ~~Y~~~~~~~~~~v~l~~~~P~i~~s~v~-g~~~--~~~G~e~~yd~~~~~~t~~n~~~gY~~-~d~~~s~~l~~~~~~~  203 (295)
T 3emn_X          128 TGYKREHINLGCDVDFDIAGPSIRGALVL-GYEG--WLAGYQMNFETSKSRVTQSNFAVGYKT-DEFQLHTNVNDGTEFG  203 (295)
T ss_dssp             EEEEETTEEEEEEEEECTTCCEEEEEEEE-EETT--EEEEEEEEEETTTTEEEEEEEEEEEEC-SSEEEEEEEETTTEEE
T ss_pred             EEEEcCCEeEEEEEEeccCCCEEEEEEEE-eeCC--EEEEEEEEEEeCCCCeeeEEEEEEEcC-CCEEEEEEECCCCeEE
Confidence            8999999988554421  12367666443 2477  699999999987654 56889999988 8999999999888999


Q ss_pred             EEEEEeeCCCeEEEEEEEeeccccCCCceeEEEEE
Q 024666          227 ALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALA  261 (264)
Q Consensus       227 ~~y~~kl~p~~~l~ls~~~d~~~~~~~~K~G~gl~  261 (264)
                      ++|-||++|.+.+..-...+..  .+...+++|-.
T Consensus       204 aSy~qkvs~~~~~g~e~~~~~~--~~~~~~tvG~k  236 (295)
T 3emn_X          204 GSIYQKVNKKLETAVNLAWTAG--NSNTRFGIAAK  236 (295)
T ss_dssp             EEEEEECSSSEEEEEEEEEETT--EEEEEEEEEEE
T ss_pred             EEEEEECCCceEEEEEEEEecc--CCCcEEEEEEE
Confidence            9999999997755554444432  33455665543

>3bs0_A TODX; beta barrel, outer membrane protein, transport protein; HET: C8E; 2.60A {Pseudomonas putida} PDB: 3brz_A*

Probab=90.81  E-value=9.4  Score=34.74  Aligned_cols=76  Identities=12%  Similarity=0.095  Sum_probs=49.6

Q ss_pred             CCeEEEEEEEEeCCCcceeEEEEEEEeecC--------------------------CceeEEEEEEEeeCCCCeEEEEEc
Q 024666          167 GDTLNASYYHIVSPLTNTAVGAELTHSFSS--------------------------NENTLTIGTQHALDPLTSVKARVN  220 (264)
Q Consensus       167 ~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~--------------------------~~~~~~vG~~y~ld~~~~~Kakv~  220 (264)
                      +..+.++..|+++++  +.+.+++.|..=+                          ....+++|++|+++++.++|+=+.
T Consensus       278 P~~~~~g~~~~~~~~--~~l~~d~~~~~WS~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~lG~ey~~~~~~~lRaG~~  355 (439)
T 3bs0_A          278 PASLTLGLAHQFNER--WVVAADIKRAYWGDVMDSMNVAFISQLGGIDVALPHRYQDITVASIGTAYKYNNDLTLRAGYS  355 (439)
T ss_dssp             CCEEEEEEEEESSSS--EEEEEEEEEECGGGCCC-CCCEEEETTEEEEECCCCCCCCEEEEEEEEEEECSSSEEEEEEEE
T ss_pred             CcEEEEeEEEEeCCC--EEEEEEEEEEEccchhhheeeeecCCCCCccccCCCCceeeeEEEEEEEEEcCCCEEEEEeeE
Confidence            567999999999999  5888888875321                          123567777777777777776542


Q ss_pred             ------------------CCceEEEEEEEeeCCCeEEEEEEE
Q 024666          221 ------------------NYGRASALIQHEWRPKSLFTISGE  244 (264)
Q Consensus       221 ------------------s~g~v~~~y~~kl~p~~~l~ls~~  244 (264)
                                        +...+++....++.+++.+.++.+
T Consensus       356 yd~sp~~~~~~~~~~p~~~~~~~s~G~gy~~~~~~~id~a~~  397 (439)
T 3bs0_A          356 YAQQALDSELILPVIPAYLKRHVTFGGEYDFDKDSRINLAIS  397 (439)
T ss_dssp             ECC------CCCTTSCCCCSEEEEEEEEEESSSSEEEEEEEE
T ss_pred             cccCCCCcccccccccCccceEEEeeeEEEcCCCcEEEEEEE
Confidence                              112355555556655555555543

>3bry_A TBUX; beta barrel, outer membrane protein, transport protein; HET: C8E; 3.20A {Ralstonia pickettii}

Probab=87.24  E-value=17  Score=32.94  Aligned_cols=51  Identities=16%  Similarity=0.196  Sum_probs=35.9

Q ss_pred             CCeEEEEEEEEeCCCcceeEEEEEEEeecC----------------------------CceeEEEEEEEeeCCCCeEEEE
Q 024666          167 GDTLNASYYHIVSPLTNTAVGAELTHSFSS----------------------------NENTLTIGTQHALDPLTSVKAR  218 (264)
Q Consensus       167 ~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~----------------------------~~~~~~vG~~y~ld~~~~~Kak  218 (264)
                      +..+.++..|+++++  +.+.+++.|..-+                            ....+++|++|+++++.++|+=
T Consensus       278 P~~~~~g~~~~~~~~--~~l~~d~~~~~wS~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~lG~ey~~~~~~~lRaG  355 (441)
T 3bry_A          278 PAQLTVGISHQFNDQ--LSVSADYQRVFWSSVMKDMNVGFVQSGSAANLDLSLPQNYRDISVFGIGAEYRYNAKWTFRGG  355 (441)
T ss_dssp             CCEEEEEEEEESSSS--EEEEEEEEEECGGGCCSEEEEEECCSSSCCCCCCEEECCCCCEEEEEEEEEEEEETTEEEEEE
T ss_pred             ccEEEEeEEEEeCCC--EEEEEEEEEEEccchhhheeeeccCCcccccccccCCCCceeceEEEEEEEEEcCCCeEEEEe
Confidence            567999999999999  5888888875311                            1346667777777666666654


Q ss_pred             E
Q 024666          219 V  219 (264)
Q Consensus       219 v  219 (264)
                      +
T Consensus       356 ~  356 (441)
T 3bry_A          356 F  356 (441)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3dwo_X Probable outer membrane protein; beta barrel; HET: C8E; 2.20A {Pseudomonas aeruginosa}

Probab=86.07  E-value=21  Score=32.79  Aligned_cols=51  Identities=22%  Similarity=0.191  Sum_probs=36.1

Q ss_pred             CCeEEEEEEEEeCCCcceeEEEEEEEeecC----------------------CceeEEEEEEEeeCCCCeEEEEE
Q 024666          167 GDTLNASYYHIVSPLTNTAVGAELTHSFSS----------------------NENTLTIGTQHALDPLTSVKARV  219 (264)
Q Consensus       167 ~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~----------------------~~~~~~vG~~y~ld~~~~~Kakv  219 (264)
                      ++.+.++..++++++  +.+.+++.|..-+                      ....+++|+.|+++++.++|+=+
T Consensus       285 P~~~~lg~~~~~~~~--~~l~~d~~~~~wS~~~~~~~~~~~~~~~~~~~~~~d~~~~~lG~eY~~~~~~tlRaG~  357 (451)
T 3dwo_X          285 PAYASLDWVHQFNDR--LSLGASATWTEWSSFQDLTLKSHGNTIVSIPYTYRNTWTLAVGGDYKVTDQWTMRAGV  357 (451)
T ss_dssp             CCEEEEEEEEECSSS--EEEEEEEEEECGGGCCEEEEEETTEEEEEEECCCCCEEEEEEEEEEESSSSEEEEEEE
T ss_pred             CcEEEEEEEEEeCCC--EEEEEEEEEEEecCcceeEEEcCCccccccccCceeeeEEEEEEEEEeCCCEEEEEEE
Confidence            567899999999999  5888888886321                      23466667777766666666633

>3pgu_A Long-chain fatty acid transport protein; outer membrane beta barrel, lipid transport, outer membrane; HET: C8E 2PE OLA; 1.70A {Escherichia coli k-12} SCOP: f.4.3.4 PDB: 3pgs_A* 1t16_A* 1t1l_A* 3dwn_A* 2r4p_A* 3pgr_A* 2r4n_A* 2r4l_A* 2r89_A 2r4o_A* 3pf1_A* 2r8a_A* 2r88_A

Probab=85.51  E-value=13  Score=33.81  Aligned_cols=77  Identities=16%  Similarity=0.031  Sum_probs=46.6

Q ss_pred             CCeEEEEEEEEeCCCcceeEEEEEEEeecCCceeEEEEEEEeeCCCC--eEEEEEcCCceEEEEEEEeeCCCeEEEEEEE
Q 024666          167 GDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLT--SVKARVNNYGRASALIQHEWRPKSLFTISGE  244 (264)
Q Consensus       167 ~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~y~ld~~~--~~Kakv~s~g~v~~~y~~kl~p~~~l~ls~~  244 (264)
                      ++.+.++..|+++++  +.+.+++.|..=+.-..+.+-  +. +...  ...-..++.+.+.+..|.+++|.+++..+..
T Consensus       272 P~~~~~g~~~~~~~~--~~l~~d~~~~~WS~~~~~~~~--~~-~g~~~~~~~~~~~D~~~~~lG~eY~~~~~~~lRaG~~  346 (427)
T 3pgu_A          272 PEMWEVSGYNRVDPQ--WAIHYSLAYTSWSQFQQLKAT--ST-SGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIA  346 (427)
T ss_dssp             CEEEEEEEEEEEETT--EEEEEEEEEEEESSCSCEEEE--EE-TTEEEEEECCCCEEEEEEEEEEEEECSSSEEEEEEEE
T ss_pred             CcEEEEEEEEecCCC--EEEEEEEEEEEeccccceEEE--cC-CCcccccccCCceeccEEEEEEEEEcCCCEEEEEEEE
Confidence            457899999999999  588999998743321111111  00 0000  1111234556677777777777777777777


Q ss_pred             eecc
Q 024666          245 VDTR  248 (264)
Q Consensus       245 ~d~~  248 (264)
                      .|..
T Consensus       347 yd~s  350 (427)
T 3pgu_A          347 FDDS  350 (427)
T ss_dssp             EEEC
T ss_pred             EccC
Confidence            7654

>3nsg_A Outer membrane protein F; porin, beta barrel, beta barrel MEMB protein; HET: LDA TAM FLC TLA; 2.79A {Salmonella enterica subsp}

Probab=80.50  E-value=29  Score=30.41  Aligned_cols=134  Identities=6%  Similarity=0.010  Sum_probs=81.3

Q ss_pred             CcceEeEEEEeecCC------CcceeEEEEEeEEcCCeEEEEEEccC---------------CCeEEEEEEEEeCCCcce
Q 024666          126 NSVALGTDLSFDTAT------GNFTKCNAGLSYTHTDLIASLTLNDK---------------GDTLNASYYHIVSPLTNT  184 (264)
Q Consensus       126 ~~~~lG~e~~yd~~~------~~~~~~~~~~~Y~~~d~~~s~~~~~~---------------~~~~~~Sy~~kv~~~~~~  184 (264)
                      .+|.+++...+.-..      ..-..|.+++.|....+.+.+-....               .+.+.+.--..+.+   +
T Consensus       147 ~G~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~Y~~g~l~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~g~~Y~~g~---~  223 (341)
T 3nsg_A          147 DGLSFGIQYQGKNQDNHSINSQNGDGVGYTMAYEFDGFGVTAAYSNSKRTNDQQDRDGNGDRAESRAVGAKYDANN---V  223 (341)
T ss_dssp             SSEEEEEEEECCBCSSSCGGGCBCSEEEEEEEEEETTEEEEEEEEEECCCSTTSSSSSCCSCEEEEEEEEEEEETT---E
T ss_pred             CCEEEEEEEEeCCCCCccccccCCceEEEEEEEEcCCEEEEEEEEeecCcccccccccCccceEEEEEEeEEEeCC---E
Confidence            455555554443221      12346888888988888777754210               01233333334443   2


Q ss_pred             eEEEEEEEeec---------------CCceeEEEEEEEeeCCCCeEEEEE-----cC----------CceEEEEEEEeeC
Q 024666          185 AVGAELTHSFS---------------SNENTLTIGTQHALDPLTSVKARV-----NN----------YGRASALIQHEWR  234 (264)
Q Consensus       185 ~~g~e~~~~~~---------------~~~~~~~vG~~y~ld~~~~~Kakv-----~s----------~g~v~~~y~~kl~  234 (264)
                      .+++...+...               .+...++++++|++.+...+++..     +.          .-.+.+.++..|+
T Consensus       224 ~l~a~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~Y~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~lg~~Y~LS  303 (341)
T 3nsg_A          224 YLAAVYAETRNMSIVENTVTDTVEMANKTQNLEVVAQYQFDFGLRPAISYVQSKGKQLNGAGGSADLAKYIQAGATYYFN  303 (341)
T ss_dssp             EEEEEEEEESSCCCEECTTTCCEECCSEEEEEEEEEEECCTTSCCEEEEEEEEEEESCTTTTSCEEEEEEEEEEEEECCC
T ss_pred             EEEEEEEEEEeccccCcccccccccceEEEEEEEEEEEEecCCcEEEEEEEEEeccccccccCCcCccEEEEEEEEEEec
Confidence            45554444321               134578999999998877776532     11          2247899999999


Q ss_pred             CCeEEEEEEEeeccc--------cCCCceeEEEEEE
Q 024666          235 PKSLFTISGEVDTRA--------IEKSAKIGLALAL  262 (264)
Q Consensus       235 p~~~l~ls~~~d~~~--------~~~~~K~G~gl~l  262 (264)
                      +...+-+...+|..+        .+..-.+++|+..
T Consensus       304 KrT~lY~~y~~~~~~~~~~~~~~~~~dd~~~vGlry  339 (341)
T 3nsg_A          304 KNMNVWVDYRFNLLDENDYSSSYVGTDDQAAVGITY  339 (341)
T ss_dssp             SSEEEEEEEEEECCCCCSSCTTTTCSSCEEEEEEEE
T ss_pred             CCEEEEEEEEEecccCccccccccCcCCEEEEEEEE
Confidence            999998888887653        1235689998865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	264
d1t16a_	427	Long-chain fatty acid transport protein FadL {Esch	82.79

>d1t16a_ f.4.3.4 (A:) Long-chain fatty acid transport protein FadL {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Transmembrane beta-barrels
superfamily: Porins
family: Outer membrane protein transport protein
domain: Long-chain fatty acid transport protein FadL
species: Escherichia coli [TaxId: 562]

Probab=82.79  E-value=11  Score=30.82  Aligned_cols=75  Identities=15%  Similarity=0.078  Sum_probs=51.8

Q ss_pred             CeEEEEEEEEeCCCcceeEEEEEEEeec-----------------------CCceeEEEEEEEeeCCCCeEEEEEcC---
Q 024666          168 DTLNASYYHIVSPLTNTAVGAELTHSFS-----------------------SNENTLTIGTQHALDPLTSVKARVNN---  221 (264)
Q Consensus       168 ~~~~~Sy~~kv~~~~~~~~g~e~~~~~~-----------------------~~~~~~~vG~~y~ld~~~~~Kakv~s---  221 (264)
                      ..+.+++-+++.++  +.+.+++.|..-                       .....+.+|++|++.+...+|+-+.-   
T Consensus       273 ~~~~~G~~~~~~~~--~~l~~d~~~~~ws~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ey~~~~~l~lR~Gy~y~~~  350 (427)
T d1t16a_         273 EMWEVSGYNRVDPQ--WAIHYSLAYTSWSQFQQLKATSTSGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIAFDDS  350 (427)
T ss_dssp             CEEEEEEEEEEETT--EEEEEEEEEECGGGCCEEEEECTTSCEEEEEECCCCCEEEEEEEEEECCSSSEEEEEEEEEECC
T ss_pred             cEEEEEEEEEeccc--eeEEEeeeecccccccccccccCCCcccccccccccceEEEEEEEEEEecccEEEEEEEEEccC
Confidence            46777888888888  477777777421                       23467888888888777788887652   


Q ss_pred             ---------------CceEEEEEEEeeCCCeEEEEEEE
Q 024666          222 ---------------YGRASALIQHEWRPKSLFTISGE  244 (264)
Q Consensus       222 ---------------~g~v~~~y~~kl~p~~~l~ls~~  244 (264)
                                     .-.+++....++.+.+++.++.+
T Consensus       351 ~~~~~~~~~~~p~~~~~~~s~G~~~~~~~~~~id~a~~  388 (427)
T d1t16a_         351 PVPAQNRSISIPDQDRFWLSAGTTYAFNKDASVDVGVS  388 (427)
T ss_dssp             SSCTTTCCSSSCCCCEEEEEEEEEEESSSSEEEEEEEE
T ss_pred             CCCcccccccccCCCCEEEEEEEEEEcCCCeEEEEEEE
Confidence                           23467777777777766666554