Citrus Sinensis ID: 024669

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260----
Protein Sequence
MSSSSCLLLSSSVPRIKKEAFANIRTKRDASTSASVSISCKLKPAPPCPLTLFFNSNPAKQKIVLVRSRTETGSGTDSDTDLATLAGEDSAAFDLKNQKLTSWVYFSVILGVVLFLLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGARAYRVLFAGVSLPLAVSTIVYFINHRYDGMQLWQLQGAPGVHQIVWLSSFVSFFFLYPSTFNLLEVAAVDEPKMHLWETGVMRITRHPQV
Secondary Structure (PSIPRED)
cccccEEEEcccccHHHHHHHHHHccccccccccEEEEEEEcccccccccccccccccccccEEEEEcccccccccccccccccccccccccEEccccccHHHHHHHHHHHHHHHHHHEEEEEccccccHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccEEEcEEcccccEEEEEEEHHHcEEEEEcccccccEEHHccccccEEEEEcEEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccHHHEccccccHHHHHEEEEccccccccccEEEEEEEcccccccccEEEcccccccEEEEEEEcccccccccccccccccEEccccHHEcccHccHHHHHHHHHHHHHHHHHHHHHEEcccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccEEEEEccEEEEEccccc
Coil and Loop (DISEMBL)
mssssclllsssvpriKKEAFANirtkrdastsasvsiscklkpappcpltlffnsnpakQKIVLVRSrtetgsgtdsdtdlatlagedsaafdlknqkltSWVYFSVILGVVLFLLQLLwidnstgygKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGARAYRVLFAGVSLPLAVSTIVYFINHRydgmqlwqlqgapgvhqIVWLSSFVSFFFlypstfnllevaavdepkmhlWETGVMRITRHPQV
Flexible Loop (DISEMBL)
mssssclllsssvprIKKEafanirtkrdastsasvsiSCKLKPAPPCPLTLFFNSNPAKQKIVLVRsrtetgsgtdsdtdlATLAGEDSAAFDLKNQKLTSWVYFSVILGVVLFLLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGARAYRVLFAGVSLPLAVSTIVYFINHRYDGMQLWQLQGAPGVHQIVWLSSFVSFFFLYPSTFNLLEVAAVDEPKMHLWETgvmritrhpqv
Low Complexity Region (SEG)
MssssclllsssVPRIKKEAFANIRTKRDASTSASVSISCKLKPAPPCPLTLFFNSNPAKQKIVLVRSRTEtgsgtdsdtdlatlagEDSAAFDLKNQKLTSWVYFSvilgvvlfllqllWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGARAYRVLFAGVSLPLAVSTIVYFINHRYDGMQLWQLQGAPGVHQIVWLssfvsfffLYPSTFNLLEVAAVDEPKMHLWETGVMRITRHPQV
Disordered region (IsUnstruct)
***************************************CKLKPAPPCPLTLFFNSNPAKQKIVLV************************AAFDLKNQKLTSWVYFSVILGVVLFLLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGARAYRVLFAGVSLPLAVSTIVYFINHRYDGMQLWQLQGAPGVHQIVWLSSFVSFFFLYPSTFNLLEVAAVDEPKMHLWETGVMRI******
Disordered Region (DISOPRED)
******L**SSSVPRIKKEAFANIRTKRDA*TSASVSISCKLKPAPPCPLTLFFNSNPA**************************AGEDSAAFDLKNQKLTSWVYFSVILGVVLFLLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGARAYRVLFAGVSLPLAVSTIVYFINHRYDGMQLWQLQGAPGVHQIVWLSSFVSFFFLYPSTFNLLEVAAVDEPKMHLWETGVMRITRHP**
Disordered Region (DISEMBL)
********LSSSVPRIKKEAFANIRT***********ISCKLKPAPPCPLTLFFNSNPAKQKIVLVR**********SDTDLATLAGEDSAAFDLKNQKLTSWVYFSVILGVVLFLLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGARAYRVLFAGVSLPLAVSTIVYFINHRYDGMQLWQLQGAPGVHQIVWLSSFVSFFFLYPSTFNLLEVAAVDEPKMHLWETGVMRITRHPQV
Disordered Region (DISPRO)
*****C*LLSSSVPRIKKEAFANIRTKRD*STSASVSISCKLKPAPPCPLTLFFNSNPAKQKIVLVRSR*************ATLAGEDSAAFDLKNQKLTSWVYFSVILGVVLFLLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGARAYRVLFAGVSLPLAVSTIVYFINHRYDGMQLWQLQGAPGVHQIVWLSSFVSFFFLYPSTFNLLEVAAVDEPKMHLWETGVMRITR****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSSSCLLLSSSVPRIKKEAFANIRTKRDASTSASVSISCKLKPAPPCPLTLFFNSNPAKQKIVLVRSRTETGSGTDSDTDLATLAGEDSAAFDLKNQKLTSWVYFSVILGVVLFLLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGARAYRVLFAGVSLPLAVSTIVYFINHRYDGMQLWQLQGAPGVHQIVWLSSFVSFFFLYPSTFNLLEVAAVDEPKMHLWETGVMRITRHPQV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	264	2.2.26 [Sep-21-2011]
Q9SAC0	367	15-cis-zeta-carotene isom	no	no	0.780	0.561	0.727	1e-85
B4FHU1	366	15-cis-zeta-carotene isom	N/A	no	0.833	0.601	0.619	1e-72

>sp|Q9SAC0|ZCIS_ARATH 15-cis-zeta-carotene isomerase, chloroplastic OS=Arabidopsis thaliana GN=Z-ISO PE=1 SV=1

 Score =  316 bits (809), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 152/209 (72%), Positives = 181/209 (86%), Gaps = 3/209 (1%)

Query: 58  PAKQKIVLVRS--RTETGSGTDSDTDLATLAGEDSAAFDLKNQKLTSWVYFSVILGVVLF 115
           P  +KI LVRS  R +    +DS++    L GEDSAAF+L  QKL SWVYF V+LGVVLF
Sbjct: 50  PVIRKI-LVRSTLREDQPIASDSESSPTLLIGEDSAAFELGKQKLVSWVYFGVVLGVVLF 108

Query: 116 LLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGAR 175
           +L ++WIDNSTG+GK+FID+VS++S S EV ML+LILIFA VHSGLASLRD+GEK+IG R
Sbjct: 109 ILNVVWIDNSTGFGKSFIDAVSNISGSPEVAMLMLILIFAIVHSGLASLRDIGEKLIGER 168

Query: 176 AYRVLFAGVSLPLAVSTIVYFINHRYDGMQLWQLQGAPGVHQIVWLSSFVSFFFLYPSTF 235
           A+RVLFAG+SLPLA+STIVYFINHRYDG QLWQLQG PGVH+ +W+++FVSFFFLYPSTF
Sbjct: 169 AFRVLFAGISLPLAMSTIVYFINHRYDGSQLWQLQGVPGVHEAIWVANFVSFFFLYPSTF 228

Query: 236 NLLEVAAVDEPKMHLWETGVMRITRHPQV 264
           NLLEVAAVD+PKMHLWETG+MRITRHPQ+
Sbjct: 229 NLLEVAAVDKPKMHLWETGIMRITRHPQM 257

Isomerase involved in the biosynthesis of carotenoids. Catalyzes the cis- to trans-conversion of the 15-cis-bond in 9,15,9'-tri-cis-zeta-carotene.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 2

>sp|B4FHU1|ZCIS_MAIZE 15-cis-zeta-carotene isomerase, chloroplastic OS=Zea mays PE=1 SV=1

 Score =  273 bits (697), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 137/221 (61%), Positives = 173/221 (78%), Gaps = 1/221 (0%)

Query: 45  APPCPLT-LFFNSNPAKQKIVLVRSRTETGSGTDSDTDLATLAGEDSAAFDLKNQKLTSW 103
           AP  PL+ +  ++ PA+     +  +    +  D       L GEDSAAF+LK+Q + SW
Sbjct: 36  APLPPLSRVLSHARPARAVGGGIEPKEGVVAEGDESGGGPVLVGEDSAAFELKDQSVASW 95

Query: 104 VYFSVILGVVLFLLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLAS 163
            YF+ ILG VL  L +LWID STG G  F+D+V+S+SDSHEVVML+L +IFA VHSG+AS
Sbjct: 96  AYFAGILGAVLVALNVLWIDPSTGVGTKFLDAVASVSDSHEVVMLLLTIIFAVVHSGMAS 155

Query: 164 LRDMGEKVIGARAYRVLFAGVSLPLAVSTIVYFINHRYDGMQLWQLQGAPGVHQIVWLSS 223
           LR+ GEK++G R YRVLFAG+SLPLAV+TIVYFINHRYDG QLWQ+QG  G+H+++W SS
Sbjct: 156 LRESGEKIVGERVYRVLFAGISLPLAVTTIVYFINHRYDGTQLWQVQGITGIHELLWFSS 215

Query: 224 FVSFFFLYPSTFNLLEVAAVDEPKMHLWETGVMRITRHPQV 264
           F+SFFFLYPSTFNLLEVAAVD+PK+H+WETG+MRITRHPQ+
Sbjct: 216 FISFFFLYPSTFNLLEVAAVDKPKLHMWETGIMRITRHPQM 256

Isomerase involved in the biosynthesis of carotenoids. Catalyzes the cis- to trans-conversion of the 15-cis-bond in 9,15,9'-tri-cis-zeta-carotene.

Zea mays (taxid: 4577)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	264
186478348	285	15-cis-zeta-carotene isomerase [Arabidop	0.780	0.722	0.732	6e-85
224131464	374	predicted protein [Populus trichocarpa]	0.723	0.510	0.778	8e-85
255557164	384	conserved hypothetical protein [Ricinus	0.893	0.614	0.614	1e-84
18391209	367	15-cis-zeta-carotene isomerase [Arabidop	0.780	0.561	0.727	7e-84
21554297	367	unknown [Arabidopsis thaliana]	0.780	0.561	0.722	2e-83
357520421	364	hypothetical protein MTR_8g097190 [Medic	0.791	0.574	0.674	8e-83
297849442	366	hypothetical protein ARALYDRAFT_471219 [	0.761	0.549	0.727	2e-82
357462929	358	hypothetical protein MTR_3g084950 [Medic	0.685	0.505	0.751	3e-82
363807150	369	uncharacterized protein LOC100793910 [Gl	0.746	0.533	0.715	7e-82
449468784	372	PREDICTED: 15-cis-zeta-carotene isomeras	0.731	0.518	0.764	1e-81

>gi|186478348|ref|NP_001117264.1| 15-cis-zeta-carotene isomerase [Arabidopsis thaliana] gi|332190531|gb|AEE28652.1| 15-cis-zeta-carotene isomerase [Arabidopsis thaliana]

 Score =  319 bits (818), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 153/209 (73%), Positives = 181/209 (86%), Gaps = 3/209 (1%)

Query: 58  PAKQKIVLVRS--RTETGSGTDSDTDLATLAGEDSAAFDLKNQKLTSWVYFSVILGVVLF 115
           P  +KI LVRS  R +    +DS++    L GEDSAAF+L  QKL SWVYF V+LGVVLF
Sbjct: 50  PVIRKI-LVRSTLREDQPIASDSESSPTLLIGEDSAAFELGKQKLVSWVYFGVVLGVVLF 108

Query: 116 LLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGAR 175
           +L ++WIDNSTG+GK+FID+VS++S S EV ML+LILIFA VHSGLASLRD+GEK+IG R
Sbjct: 109 ILNVVWIDNSTGFGKSFIDAVSNISGSPEVAMLMLILIFAIVHSGLASLRDIGEKLIGER 168

Query: 176 AYRVLFAGVSLPLAVSTIVYFINHRYDGMQLWQLQGAPGVHQIVWLSSFVSFFFLYPSTF 235
           A+RVLFAG+SLPLA+STIVYFINHRYDG QLWQLQG PGVH+ +W+++FVSFFFLYPSTF
Sbjct: 169 AFRVLFAGISLPLAMSTIVYFINHRYDGSQLWQLQGVPGVHEAIWVANFVSFFFLYPSTF 228

Query: 236 NLLEVAAVDEPKMHLWETGVMRITRHPQV 264
           NLLEVAAVD+PKMHLWETG+MRITRHPQV
Sbjct: 229 NLLEVAAVDKPKMHLWETGIMRITRHPQV 257

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131464|ref|XP_002321091.1| predicted protein [Populus trichocarpa] gi|222861864|gb|EEE99406.1| predicted protein [Populus trichocarpa]

 Score =  319 bits (817), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 151/194 (77%), Positives = 175/194 (90%), Gaps = 3/194 (1%)

Query: 74  SGTDSDTDLAT---LAGEDSAAFDLKNQKLTSWVYFSVILGVVLFLLQLLWIDNSTGYGK 130
           S  D+DTD +    LAGEDSAAF+L  QK++SW+YFS+ILGVVLF+L + WIDNSTG+GK
Sbjct: 71  STKDADTDTSVPPPLAGEDSAAFELGKQKVSSWIYFSLILGVVLFVLDVAWIDNSTGFGK 130

Query: 131 AFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGARAYRVLFAGVSLPLAV 190
            FI +VSSLS+S EVVM +LILIFATVHSGLASLRDMGEK+IG RA+RVLFAGVSLPLAV
Sbjct: 131 DFISAVSSLSESPEVVMFILILIFATVHSGLASLRDMGEKLIGERAFRVLFAGVSLPLAV 190

Query: 191 STIVYFINHRYDGMQLWQLQGAPGVHQIVWLSSFVSFFFLYPSTFNLLEVAAVDEPKMHL 250
           ST+VYFINHRYDG+QLW+LQ AP VHQ+VWLS+F+SF FLYPSTFNLLEVAAVD+PKMHL
Sbjct: 191 STVVYFINHRYDGIQLWELQSAPAVHQLVWLSNFISFLFLYPSTFNLLEVAAVDKPKMHL 250

Query: 251 WETGVMRITRHPQV 264
           WETG+MRITRHPQ+
Sbjct: 251 WETGIMRITRHPQM 264

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557164|ref|XP_002519613.1| conserved hypothetical protein [Ricinus communis] gi|223541203|gb|EEF42758.1| conserved hypothetical protein [Ricinus communis]

 Score =  318 bits (816), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 166/270 (61%), Positives = 203/270 (75%), Gaps = 34/270 (12%)

Query: 2   SSSSCLLLSSSVPRIKKEAFANIRTKRDASTSASVSISCK-LKPAPPCPLTLFFNSNPAK 60
           S+ + LLL++S+P  + +                 SIS K L+P P        NS P  
Sbjct: 20  SNPTQLLLATSIPTFQNQT--------------KYSISSKFLRPNP--------NSVPFS 57

Query: 61  QKIVLVRSRTETGSGTDSDTDLATLA------GEDSAAFDLKNQKLTSWVYFSVILGVVL 114
            +I+    RT+T S  D+DT  ++        GEDSAAF+L  QK++SW+YFSVILGV L
Sbjct: 58  SRII----RTQT-SIRDADTSSSSSVSEETVVGEDSAAFELGKQKMSSWIYFSVILGVAL 112

Query: 115 FLLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGA 174
           ++L + WIDNSTG+GK+FI SVS+LS+SHE VML+LI IFATVHSGLASLRD GE++IG 
Sbjct: 113 YVLDVAWIDNSTGFGKSFIQSVSTLSESHEAVMLILIFIFATVHSGLASLRDKGEELIGE 172

Query: 175 RAYRVLFAGVSLPLAVSTIVYFINHRYDGMQLWQLQGAPGVHQIVWLSSFVSFFFLYPST 234
           RAYRVLFAGVSLPLA+ST+VYFINHRYDG+QLWQLQ AP VHQ+VWL +F+SFFFLYPST
Sbjct: 173 RAYRVLFAGVSLPLAMSTVVYFINHRYDGVQLWQLQSAPAVHQLVWLFNFISFFFLYPST 232

Query: 235 FNLLEVAAVDEPKMHLWETGVMRITRHPQV 264
           FNLLEVAAVD+PKMHLWETG+MRITRHPQ+
Sbjct: 233 FNLLEVAAVDKPKMHLWETGIMRITRHPQM 262

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18391209|ref|NP_563879.1| 15-cis-zeta-carotene isomerase [Arabidopsis thaliana] gi|75200564|sp|Q9SAC0.1|ZCIS_ARATH RecName: Full=15-cis-zeta-carotene isomerase, chloroplastic; Flags: Precursor gi|4874265|gb|AAD31330.1|AC007354_3 EST gb|F13926 comes from this gene [Arabidopsis thaliana] gi|13194774|gb|AAK15549.1|AF348578_1 unknown protein [Arabidopsis thaliana] gi|62320518|dbj|BAD95085.1| hypothetical protein [Arabidopsis thaliana] gi|332190530|gb|AEE28651.1| 15-cis-zeta-carotene isomerase [Arabidopsis thaliana]

 Score =  316 bits (809), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 152/209 (72%), Positives = 181/209 (86%), Gaps = 3/209 (1%)

Query: 58  PAKQKIVLVRS--RTETGSGTDSDTDLATLAGEDSAAFDLKNQKLTSWVYFSVILGVVLF 115
           P  +KI LVRS  R +    +DS++    L GEDSAAF+L  QKL SWVYF V+LGVVLF
Sbjct: 50  PVIRKI-LVRSTLREDQPIASDSESSPTLLIGEDSAAFELGKQKLVSWVYFGVVLGVVLF 108

Query: 116 LLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGAR 175
           +L ++WIDNSTG+GK+FID+VS++S S EV ML+LILIFA VHSGLASLRD+GEK+IG R
Sbjct: 109 ILNVVWIDNSTGFGKSFIDAVSNISGSPEVAMLMLILIFAIVHSGLASLRDIGEKLIGER 168

Query: 176 AYRVLFAGVSLPLAVSTIVYFINHRYDGMQLWQLQGAPGVHQIVWLSSFVSFFFLYPSTF 235
           A+RVLFAG+SLPLA+STIVYFINHRYDG QLWQLQG PGVH+ +W+++FVSFFFLYPSTF
Sbjct: 169 AFRVLFAGISLPLAMSTIVYFINHRYDGSQLWQLQGVPGVHEAIWVANFVSFFFLYPSTF 228

Query: 236 NLLEVAAVDEPKMHLWETGVMRITRHPQV 264
           NLLEVAAVD+PKMHLWETG+MRITRHPQ+
Sbjct: 229 NLLEVAAVDKPKMHLWETGIMRITRHPQM 257

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21554297|gb|AAM63372.1| unknown [Arabidopsis thaliana]

 Score =  314 bits (805), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 151/209 (72%), Positives = 180/209 (86%), Gaps = 3/209 (1%)

Query: 58  PAKQKIVLVRS--RTETGSGTDSDTDLATLAGEDSAAFDLKNQKLTSWVYFSVILGVVLF 115
           P  +KI LVRS  R +    +D ++    L GEDSAAF+L  QKL SWVYF V+LGVVLF
Sbjct: 50  PVIRKI-LVRSTLREDQPIASDYESSPTLLIGEDSAAFELGKQKLVSWVYFGVVLGVVLF 108

Query: 116 LLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGAR 175
           +L ++WIDNSTG+GK+FID+VS++S S EV ML+LILIFA VHSGLASLRD+GEK+IG R
Sbjct: 109 ILNVVWIDNSTGFGKSFIDAVSNISGSPEVAMLMLILIFAIVHSGLASLRDIGEKLIGER 168

Query: 176 AYRVLFAGVSLPLAVSTIVYFINHRYDGMQLWQLQGAPGVHQIVWLSSFVSFFFLYPSTF 235
           A+RVLFAG+SLPLA+STIVYFINHRYDG QLWQLQG PGVH+ +W+++FVSFFFLYPSTF
Sbjct: 169 AFRVLFAGISLPLAMSTIVYFINHRYDGSQLWQLQGVPGVHEAIWVANFVSFFFLYPSTF 228

Query: 236 NLLEVAAVDEPKMHLWETGVMRITRHPQV 264
           NLLEVAAVD+PKMHLWETG+MRITRHPQ+
Sbjct: 229 NLLEVAAVDKPKMHLWETGIMRITRHPQM 257

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520421|ref|XP_003630499.1| hypothetical protein MTR_8g097190 [Medicago truncatula] gi|355524521|gb|AET04975.1| hypothetical protein MTR_8g097190 [Medicago truncatula]

 Score =  312 bits (800), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 145/215 (67%), Positives = 181/215 (84%), Gaps = 6/215 (2%)

Query: 53  FFNSNP---AKQKIVLVRSRTETGSGTDSDTDLATLAGEDSAAFDLKNQKLTSWVYFSVI 109
           +F+SNP   + + +  V S  E  +   +D+DL    GEDSA FD++NQKL+SW YF+ +
Sbjct: 43  YFSSNPLLLSHKLVTRVSSSEERATTQVTDSDLV---GEDSATFDIQNQKLSSWFYFTAV 99

Query: 110 LGVVLFLLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGE 169
           LGVVL +L ++WID+STG+GKAF+DS+S +SDSHEVVMLVL+LIFA VHSGLAS RD GE
Sbjct: 100 LGVVLSVLNVIWIDDSTGFGKAFVDSISGISDSHEVVMLVLVLIFAGVHSGLASFRDTGE 159

Query: 170 KVIGARAYRVLFAGVSLPLAVSTIVYFINHRYDGMQLWQLQGAPGVHQIVWLSSFVSFFF 229
           K+IG RAYRVLFAG SLPLA++ IVYFINHRYDG+QLWQLQ  PGVHQ+VW+S+F+SF F
Sbjct: 160 KLIGERAYRVLFAGTSLPLALTMIVYFINHRYDGLQLWQLQDVPGVHQLVWISNFISFLF 219

Query: 230 LYPSTFNLLEVAAVDEPKMHLWETGVMRITRHPQV 264
           LYP+TFNLLEVAAVD+PK+HL+ETG+MRITRHPQ+
Sbjct: 220 LYPATFNLLEVAAVDKPKLHLYETGIMRITRHPQM 254

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849442|ref|XP_002892602.1| hypothetical protein ARALYDRAFT_471219 [Arabidopsis lyrata subsp. lyrata] gi|297338444|gb|EFH68861.1| hypothetical protein ARALYDRAFT_471219 [Arabidopsis lyrata subsp. lyrata]

 Score =  311 bits (796), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 147/202 (72%), Positives = 174/202 (86%), Gaps = 1/202 (0%)

Query: 64  VLVRSRTETGSGTDSDTDLATL-AGEDSAAFDLKNQKLTSWVYFSVILGVVLFLLQLLWI 122
           +LV S         SD +  TL  GEDSAAF+L  QKL SWVYF V+LGVVLF+L ++WI
Sbjct: 55  ILVHSTLREDQPIASDAESPTLLIGEDSAAFELGKQKLVSWVYFGVVLGVVLFILNVVWI 114

Query: 123 DNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGARAYRVLFA 182
           DNSTG+GK+FID+VS++S S EV ML+LILIFA VHSGLASLRD+GEK+IG RA+RVLFA
Sbjct: 115 DNSTGFGKSFIDTVSNISGSPEVAMLMLILIFAIVHSGLASLRDIGEKLIGERAFRVLFA 174

Query: 183 GVSLPLAVSTIVYFINHRYDGMQLWQLQGAPGVHQIVWLSSFVSFFFLYPSTFNLLEVAA 242
           G+SLPLA+STIVYFINHRYDG QLWQLQG PG+H+ +W+++FVSFFFLYPSTFNLLEVAA
Sbjct: 175 GISLPLAMSTIVYFINHRYDGSQLWQLQGVPGIHEAIWVANFVSFFFLYPSTFNLLEVAA 234

Query: 243 VDEPKMHLWETGVMRITRHPQV 264
           VD+PKMHLWETG+MRITRHPQ+
Sbjct: 235 VDKPKMHLWETGIMRITRHPQM 256

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462929|ref|XP_003601746.1| hypothetical protein MTR_3g084950 [Medicago truncatula] gi|217074294|gb|ACJ85507.1| unknown [Medicago truncatula] gi|355490794|gb|AES71997.1| hypothetical protein MTR_3g084950 [Medicago truncatula]

 Score =  310 bits (795), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 136/181 (75%), Positives = 168/181 (92%)

Query: 84  TLAGEDSAAFDLKNQKLTSWVYFSVILGVVLFLLQLLWIDNSTGYGKAFIDSVSSLSDSH 143
           T  GEDSAAF+L  QK+TSW+YF+ ILGVVLF+L ++WIDNSTG+GKAF+D+VS LSDSH
Sbjct: 68  TFVGEDSAAFNLTEQKITSWIYFAAILGVVLFILNVVWIDNSTGFGKAFVDAVSGLSDSH 127

Query: 144 EVVMLVLILIFATVHSGLASLRDMGEKVIGARAYRVLFAGVSLPLAVSTIVYFINHRYDG 203
           EVVML+LIL+FA  HSG+ASLR+ GEK+IG RA+RV+FAG+SLPLAV+TIVYFINHRYDG
Sbjct: 128 EVVMLILILVFAVFHSGMASLRNTGEKIIGERAFRVIFAGISLPLAVTTIVYFINHRYDG 187

Query: 204 MQLWQLQGAPGVHQIVWLSSFVSFFFLYPSTFNLLEVAAVDEPKMHLWETGVMRITRHPQ 263
           +QLWQLQ  PG+HQ++WLS+F+SFFFLYPSTFNLLE+AAVD+PK+HL+ETG++RITRHPQ
Sbjct: 188 IQLWQLQSTPGIHQLLWLSNFISFFFLYPSTFNLLEIAAVDKPKIHLYETGIIRITRHPQ 247

Query: 264 V 264
           +
Sbjct: 248 M 248

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807150|ref|NP_001242088.1| uncharacterized protein LOC100793910 [Glycine max] gi|255639319|gb|ACU19957.1| unknown [Glycine max]

 Score =  309 bits (792), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 141/197 (71%), Positives = 169/197 (85%)

Query: 68  SRTETGSGTDSDTDLATLAGEDSAAFDLKNQKLTSWVYFSVILGVVLFLLQLLWIDNSTG 127
           +RT  G             GEDSA F+L  QK++SW+YF+ ILGVVL++L + WIDNSTG
Sbjct: 63  ARTSIGENESESEKELGFVGEDSAVFELGKQKVSSWIYFTAILGVVLYVLNVAWIDNSTG 122

Query: 128 YGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGARAYRVLFAGVSLP 187
           YGKAFID+VS+LSDS EVVML+LILIFA VHSGLAS R+ GEK+IG R +RVLFAG+SLP
Sbjct: 123 YGKAFIDAVSTLSDSSEVVMLILILIFAGVHSGLASFRNTGEKLIGERPFRVLFAGISLP 182

Query: 188 LAVSTIVYFINHRYDGMQLWQLQGAPGVHQIVWLSSFVSFFFLYPSTFNLLEVAAVDEPK 247
           LAVST+VYFINHRYDG+QLWQLQ APG+HQ++WLS+F+SFFFLYPSTFNLLEVAAVD+PK
Sbjct: 183 LAVSTVVYFINHRYDGLQLWQLQDAPGLHQLLWLSNFISFFFLYPSTFNLLEVAAVDKPK 242

Query: 248 MHLWETGVMRITRHPQV 264
           +HLWETG++RITRHPQ+
Sbjct: 243 LHLWETGIIRITRHPQM 259

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468784|ref|XP_004152101.1| PREDICTED: 15-cis-zeta-carotene isomerase, chloroplastic-like [Cucumis sativus] gi|449521697|ref|XP_004167866.1| PREDICTED: 15-cis-zeta-carotene isomerase, chloroplastic-like [Cucumis sativus]

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 149/195 (76%), Positives = 172/195 (88%), Gaps = 2/195 (1%)

Query: 71  ETGSGTDSDTDLATLAGEDSAAFDLKNQKLTSWVYFSVILGVVLFLLQLLWIDNSTG-YG 129
           E+G G+ S +D     GED+AAFDL  QKLTSWVYF+VILGVVLF+L ++WIDNS G  G
Sbjct: 69  ESG-GSTSVSDDEGFVGEDAAAFDLSEQKLTSWVYFTVILGVVLFVLNVVWIDNSAGGVG 127

Query: 130 KAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGARAYRVLFAGVSLPLA 189
           KAF+D+VS +SDSHEVVML+LI IFA VHSGLASLRD GEK++G RA+RVLFAGVSLPLA
Sbjct: 128 KAFLDAVSGISDSHEVVMLLLIFIFAIVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLA 187

Query: 190 VSTIVYFINHRYDGMQLWQLQGAPGVHQIVWLSSFVSFFFLYPSTFNLLEVAAVDEPKMH 249
           VST+VYFINHRYDG+QLWQLQ  P +HQ+VWLSSFVSF FLYPSTFNLLEVAAVD+PKMH
Sbjct: 188 VSTVVYFINHRYDGVQLWQLQSVPLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMH 247

Query: 250 LWETGVMRITRHPQV 264
           LWETG++RITRHPQ+
Sbjct: 248 LWETGIIRITRHPQM 262

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	264
TAIR|locus:2196475	367	Z-ISO "15-cis-zeta-carotene is	0.806	0.580	0.629	3.1e-67

TAIR|locus:2196475 Z-ISO "15-cis-zeta-carotene isomerase" [Arabidopsis thaliana (taxid:3702)]

 Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
 Identities = 136/216 (62%), Positives = 159/216 (73%)

Query:    51 TLFFNSNPAKQKIVLVRS--RTEXXXXXXXXXXXXXXXXEDSAAFDLKNQKLTSWVYFSX 108
             +L  +S+P  +KI LVRS  R +                EDSAAF+L  QKL SWVYF  
Sbjct:    43 SLLSSSSPVIRKI-LVRSTLREDQPIASDSESSPTLLIGEDSAAFELGKQKLVSWVYFGV 101

Query:   109 XXXXXXXXXXXXWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMG 168
                         WIDNSTG+GK+FID+VS++S S EV ML+LILIFA VHSGLASLRD+G
Sbjct:   102 VLGVVLFILNVVWIDNSTGFGKSFIDAVSNISGSPEVAMLMLILIFAIVHSGLASLRDIG 161

Query:   169 EKVIGARAYRVLFAGVSLPLAVSTIVYFINHRYDGMQLWQLQGAPGVHQIVWLXXXXXXX 228
             EK+IG RA+RVLFAG+SLPLA+STIVYFINHRYDG QLWQLQG PGVH+ +W+       
Sbjct:   162 EKLIGERAFRVLFAGISLPLAMSTIVYFINHRYDGSQLWQLQGVPGVHEAIWVANFVSFF 221

Query:   229 XLYPSTFNLLEVAAVDEPKMHLWETGVMRITRHPQV 264
              LYPSTFNLLEVAAVD+PKMHLWETG+MRITRHPQ+
Sbjct:   222 FLYPSTFNLLEVAAVDKPKMHLWETGIMRITRHPQM 257


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.134   0.404    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      264       216   0.00088  112 3  11 22  0.47    32
                                                     32  0.50    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  615 (65 KB)
  Total size of DFA:  178 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.33u 0.15s 16.48t   Elapsed:  00:00:00
  Total cpu time:  16.33u 0.15s 16.48t   Elapsed:  00:00:00
  Start:  Mon May 20 17:02:12 2013   End:  Mon May 20 17:02:12 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016120 "carotene biosynthetic process" evidence=IMP

GO:0090471 "9,15,9'-tri-cis-zeta-carotene isomerase activity" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00140939	hypothetical protein (374 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pm.C_LG_II001205	RecName- Full=Photosystem II reaction center psb28 protein; (115 aa)			•	•					0.548
	estExt_fgenesh4_pm.C_700037	zeta-carotene desaturase (EC-1.14.99.30) (530 aa)	•		•				•		0.523
	fgenesh4_pm.C_LG_XIII000161	zeta-carotene desaturase (EC-1.14.99.30) (582 aa)	•		•				•		0.520
	gw1.IV.4597.1	annotation not avaliable (66 aa)			•						0.504
	estExt_Genewise1_v1.C_LG_V0741	photosystem II protein Psb27 (175 aa)			•						0.504
	grail3.0003047901	photosystem II protein Psb27 (176 aa)			•						0.503
	estExt_Genewise1_v1.C_LG_V3745	SubName- Full=Putative uncharacterized protein; (331 aa)			•						0.502
	estExt_fgenesh4_kg.C_LG_VII0034	SubName- Full=Putative uncharacterized protein; (332 aa)			•						0.501
	gw1.X.280.1	hypothetical protein (95 aa)			•						0.500
	gw1.VIII.1120.1	hypothetical protein (94 aa)			•						0.500

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	264
COG4094	219	COG4094, COG4094, Predicted membrane protein [Func	2e-24
pfam07298	184	pfam07298, NnrU, NnrU protein	3e-17

>gnl|CDD|226579 COG4094, COG4094, Predicted membrane protein [Function unknown]

 Score = 96.8 bits (241), Expect = 2e-24
 Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 11/120 (9%)

Query: 146 VMLVLILIFATVHSGLASLRDMGEKVIGARAYRVLFAGVSLPLAVSTIVYFINHRYDGMQ 205
           ++++ +++F  +HS            + A A+R      S  LA   +  F++ R  G+ 
Sbjct: 3   ILVLGLVLFLGLHSV----------RVAAPAFRARLIAASGKLAWRGLYSFVSLRGLGLV 52

Query: 206 LWQLQGAPGVHQIVW-LSSFVSFFFLYPSTFNLLEVAAVDEPKMHLWETGVMRITRHPQV 264
           +W +Q   GV  ++W   ++     L  +TF L+ +AA  +P  HL+E  ++RITRHPQ+
Sbjct: 53  IWAVQVVRGVPPMLWDPPAWSRHLALLLATFALILLAAGLKPAQHLYEGRIIRITRHPQL 112

Length = 219

>gnl|CDD|203608 pfam07298, NnrU, NnrU protein

 Score = 76.8 bits (190), Expect = 3e-17
 Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 21/121 (17%)

Query: 146 VMLVLILIFATVHSGLAS--LRDMGEKVIGARAYRVLFAGVSLPLAVSTIVYFINHRYDG 203
           ++++ + +F   HS   +  LR      +G R Y+ L++ +SL   V  I+ +   RY  
Sbjct: 1   LLILGLALFLGAHSFPRAPPLRARLIARLGERGYKGLYSLLSLAGLVLIIIGYGAARYV- 59

Query: 204 MQLWQLQGAPGVHQIVWLSSFVSFFFLYPSTFNLLEVAAVDEPKMHLWETGVMRITRHPQ 263
             LW     P +  +  L   ++F  L  +      +                RITRHP 
Sbjct: 60  -PLWPPP--PWLRHLANLLMLLAFILLAAAYGPGNPIK---------------RITRHPM 101

Query: 264 V 264
           +
Sbjct: 102 L 102

This family consists of several plant and bacterial NnrU proteins. NnrU is thought to be involved in the reduction of nitric oxide. The exact function of NnrU is unclear. It is thought however that NnrU and perhaps NnrT are required for expression of both nirK and nor. Length = 184

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	264
COG4094	219	Predicted membrane protein [Function unknown]	99.95
PF07298	191	NnrU: NnrU protein; InterPro: IPR009915 This famil	99.56

>COG4094 Predicted membrane protein [Function unknown]

Probab=99.95  E-value=3.6e-30  Score=225.88  Aligned_cols=110  Identities=32%  Similarity=0.506  Sum_probs=107.3

Q ss_pred             HHHHHHHHHHHHHhccccccccchhhhhcchhhhhhhhcccchhHHHHHHHhhhccccceeeceecCCCceeehhhhhhh
Q 024669          145 VVMLVLILIFATVHSGLASLRDMGEKVIGARAYRVLFAGVSLPLAVSTIVYFINHRYDGMQLWQLQGAPGVHQIVWLSSF  224 (264)
Q Consensus       145 ~vmL~Lll~FAi~HSGlAsLR~~gE~~IG~RayRvlFA~vSLPLAv~~I~YFinHRYDGvqLW~lqgvpgv~~lVW~lsa  224 (264)
                      .+|++.++.|...||+-+          ++++||-.++..|.|++...+.||.||||||+++|++|+++|+.+++|..++
T Consensus         2 ~~lvl~l~lFl~~Hsv~~----------~~p~~R~~~i~~~g~~a~~glys~vs~~~lglvi~~~~~v~~v~~~lw~p~a   71 (219)
T COG4094           2 LILVLGLVLFLGLHSVRV----------AAPAFRARLIAASGKLAWRGLYSFVSLRGLGLVIWAVQVVRGVPPMLWDPPA   71 (219)
T ss_pred             hHHHHHHHHHHHHhcccc----------ccHHHHHHHHHhcCCcceehHHHHHHHHhhhhhheeeeccCCCCcceeCcHH
Confidence            578899999999999976          8999999999999999999999999999999999999999999999999999


Q ss_pred             hh-hhhccccccceeeeeccCCCceeeeeceeeeeecCCCC
Q 024669          225 VS-FFFLYPSTFNLLEVAAVDEPKMHLWETGVMRITRHPQV  264 (264)
Q Consensus       225 IS-FlFLYPaTFNLLEIAAV~KPqvHLyETGIiRITRHPQm  264 (264)
                      .| |+++||+|||++|++|.+||+.|+||++|+||||||||
T Consensus        72 ~~~h~~l~~a~~~l~~l~A~~~p~~~~~~g~Ii~itRHP~l  112 (219)
T COG4094          72 WSRHLALLLATFALILLAAGLKPAQHLYEGRIIRITRHPQL  112 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccCCceEEEecCchh
Confidence            99 99999999999999999999999999999999999997

>PF07298 NnrU: NnrU protein; InterPro: IPR009915 This family consists of several plant and bacterial NnrU proteins

Probab=99.56  E-value=5.2e-16  Score=131.19  Aligned_cols=103  Identities=26%  Similarity=0.393  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHhccc--cccccchhhhhcchhhhhhhhcccchhHHHHHHHhhhccccceeeceecCCCceeehhhhhh
Q 024669          146 VMLVLILIFATVHSGL--ASLRDMGEKVIGARAYRVLFAGVSLPLAVSTIVYFINHRYDGMQLWQLQGAPGVHQIVWLSS  223 (264)
Q Consensus       146 vmL~Lll~FAi~HSGl--AsLR~~gE~~IG~RayRvlFA~vSLPLAv~~I~YFinHRYDGvqLW~lqgvpgv~~lVW~ls  223 (264)
                      ++++.++.|+..||..  ..+|++.++.+|+|.||.+|+++|+..-+.+|.++-++|++ .++|+.+  |+.+.+++++.
T Consensus         1 ~li~~l~lF~~~Hs~~~~p~~R~~l~~~lG~~~y~~~ysllSl~~l~lii~~~~~a~~~-~~lw~~~--~~~~~l~~~lm   77 (191)
T PF07298_consen    1 LLILGLALFLGQHSVPARPGLRARLIARLGERGYRGLYSLLSLAGLVLIIWGYRSAPFV-PPLWDPP--PWLRHLANLLM   77 (191)
T ss_pred             CHHHHHHHHHHHHhhhccHhhhHHHHHHcCchhhHHHHHHHHHHHHHHHHHHHHhCCCC-CcccCCc--hhHHHHHHHHH
Confidence            3567788999999995  78999999999999999999999999999999999999999 9999999  99999999999


Q ss_pred             hhhhhhccccccceeeeeccCCCceeeeeceeeeeecCCCC
Q 024669          224 FVSFFFLYPSTFNLLEVAAVDEPKMHLWETGVMRITRHPQV  264 (264)
Q Consensus       224 aISFlFLYPaTFNLLEIAAV~KPqvHLyETGIiRITRHPQm  264 (264)
                      .++|++++.++++-.+..             |.|+|||||+
T Consensus        78 ~~a~il~~~a~~~~~~~~-------------i~r~~RHP~l  105 (191)
T PF07298_consen   78 LLAFILLVAALFPPNPFS-------------IYRITRHPML  105 (191)
T ss_pred             HHHHHHHHHHhccCcchH-------------HHHHhcCchH
Confidence            999999999999887766             9999999995

NnrU is thought to be involved in the reduction of nitric oxide. The exact function of NnrU is unclear. It is thought however that NnrU and perhaps NnrT are required for expression of both nirK and nor [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	264
d2nwwa1	405	f.49.1.1 (A:12-416) Proton glutamate symport prote	6e-04

>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]} Length = 405

class: Membrane and cell surface proteins and peptides
fold: Proton glutamate symport protein
superfamily: Proton glutamate symport protein
family: Proton glutamate symport protein
domain: Proton glutamate symport protein
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 38.2 bits (88), Expect = 6e-04
 Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 3/124 (2%)

Query: 108 VILGVVLFLLQLLWIDNSTGYGKAFIDSVSSLSD--SHEVVMLVLILIFATVHSGLASLR 165
           +++G++L  + +  I    GY  A    V    D     + MLV+ ++FA++  G AS+ 
Sbjct: 5   ILIGLILGAI-VGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASIS 63

Query: 166 DMGEKVIGARAYRVLFAGVSLPLAVSTIVYFINHRYDGMQLWQLQGAPGVHQIVWLSSFV 225
                 +G +         +  + +  I+  + +   G+ L         HQ   L   +
Sbjct: 64  PARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHIL 123

Query: 226 SFFF 229
               
Sbjct: 124 LDIV 127

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00