Citrus Sinensis ID: 024671

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260----
MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDTSGTAKAVISCFQKLGVSFDMDQIQMIRDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQTVSFEFQHNVCGRSIYAEGTVDAVLFLSKKVQLKADKRIYNMIDVLREGNMR
cHHHHHHHHHHcccEEEcccccccccccccccccccEEEEcccccHHHHHHHHHccccccEEEEcccHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHcccccEEEccccHHHHHHHHHHHHHHHHHcccccccccEEEEcccccccccccHHHHHHHHHHHHccccccccccEEcccccccccccccccccccccccEEEEEEccccEEEEEEEEEEccccccHHHHHHHHHHHHHccccccccccccHHHHHcccccc
cHHHHHHHHHHcccEEEEEccccccccccEEEEccEEEEEEcccHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHccccEEEcccHHHHHHHHHHHHHHHHHHcccHcccccEEEEEHHccccccccHHHHHHHHHHHHHcccccHHHcEEccccHHHccEEEEccccEEEEEEEEEEEEccccEEEEEEEEEcccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHccccc
MGKAVIKAADaaglelvpvsfgteeesgqkveVCGKEiqvhglsdreSVLASvfdkypnmivVDYTvpaavngnaelyskvgvpfvmgttggdrvrlhetiensnvyavispQMGKQVVAFLAAMEIMAEqfpgafsgySLQVLEshqagkldtsgTAKAVISCFQKlgvsfdmdqiqmirdpkqqlemvgvpeehlpghafhmyhltspdqtvsfefqhnvcgrsiyaegTVDAVLFLSKKVQLKADKRIYNMIDVLREGNMR
MGKAVikaadaaglelvpvsfgteeesgqkvEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDTSGTAKAVISCFQKLGVSFDMDQIQMIRDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQTVSFEFQHNVCGRSIYAEGTVDAVLFLSkkvqlkadkriYNMIDvlregnmr
MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDTSGTAKAVISCFQKLGVSFDMDQIQMIRDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQTVSFEFQHNVCGRSIYAEGTVDAVLFLSKKVQLKADKRIYNMIDVLREGNMR
***********AGLELVPVSF********KVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDTSGTAKAVISCFQKLGVSFDMDQIQMIRDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQTVSFEFQHNVCGRSIYAEGTVDAVLFLSKKVQLKADKRIYNMIDVL******
MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDTSGTAKAVISCFQKLGVSFD*****************GVPEEHLPGHAFHMYHLTSPDQTVSFEFQHNVCGRSIYAEGTVDAVLFLSKKVQLKADKRIYNMIDVLREGNM*
MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDTSGTAKAVISCFQKLGVSFDMDQIQMIRDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQTVSFEFQHNVCGRSIYAEGTVDAVLFLSKKVQLKADKRIYNMIDVLREGNMR
*GKAVIK*ADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDTSGTAKAVISCFQKLGVSFDMDQIQMIRDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQTVSFEFQHNVCGRSIYAEGTVDAVLFLSKKVQLKADKRIYNMIDVLRE****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDTSGTAKAVISCFQKLGVSFDMDQIQMIRDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQTVSFEFQHNVCGRSIYAEGTVDAVLFLSKKVQLKADKRIYNMIDVLREGNMR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query264 2.2.26 [Sep-21-2011]
O80574347 4-hydroxy-tetrahydrodipic yes no 1.0 0.760 0.821 1e-132
Q8LB01349 4-hydroxy-tetrahydrodipic no no 1.0 0.756 0.818 1e-131
Q67W29343 Probable 4-hydroxy-tetrah yes no 1.0 0.769 0.738 1e-115
Q10P67325 Probable 4-hydroxy-tetrah no no 1.0 0.812 0.681 1e-108
Q2NHW0273 4-hydroxy-tetrahydrodipic yes no 0.909 0.879 0.270 7e-10
C6BTW9260 4-hydroxy-tetrahydrodipic yes no 0.765 0.776 0.276 8e-09
Q1MRS7258 4-hydroxy-tetrahydrodipic yes no 0.685 0.701 0.263 1e-08
Q8THP0263 4-hydroxy-tetrahydrodipic yes no 0.795 0.798 0.280 1e-08
A9AB21270 4-hydroxy-tetrahydrodipic yes no 0.708 0.692 0.278 3e-08
Q57865274 4-hydroxy-tetrahydrodipic yes no 0.670 0.645 0.275 6e-08
>sp|O80574|DAPB1_ARATH 4-hydroxy-tetrahydrodipicolinate reductase 1, chloroplastic OS=Arabidopsis thaliana GN=DAPB1 PE=2 SV=2 Back     alignment and function desciption
 Score =  470 bits (1209), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 217/264 (82%), Positives = 248/264 (93%)

Query: 1   MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNM 60
           MGKAVIKAAD+AG+ +VP+SFG+  E GQ+VEVCGKEI VHG ++RE VL+SVF+K+P +
Sbjct: 84  MGKAVIKAADSAGVNIVPISFGSAGEDGQRVEVCGKEITVHGPTEREKVLSSVFEKHPEL 143

Query: 61  IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVA 120
           IVVDYT+P+AVN NAELYSKVGVPFVMGTTGGDR +L+ET+E + +YAVISPQMGKQVVA
Sbjct: 144 IVVDYTIPSAVNDNAELYSKVGVPFVMGTTGGDRNKLYETVEEAKIYAVISPQMGKQVVA 203

Query: 121 FLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDTSGTAKAVISCFQKLGVSFDMDQIQMI 180
           FLAAMEIMAEQFPGAFSGYSL V+ESHQA KLD SGTAKAVISCFQ+LGVS+DMDQIQ+I
Sbjct: 204 FLAAMEIMAEQFPGAFSGYSLDVMESHQASKLDASGTAKAVISCFQELGVSYDMDQIQLI 263

Query: 181 RDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQTVSFEFQHNVCGRSIYAEGTVDAVLFLS 240
           RDPKQQ+EMVGVPEEH+ GHAFH+YHLTSPD+TVSFEFQHNVCGRSIYAEGTVDAVLFL+
Sbjct: 264 RDPKQQVEMVGVPEEHISGHAFHLYHLTSPDETVSFEFQHNVCGRSIYAEGTVDAVLFLA 323

Query: 241 KKVQLKADKRIYNMIDVLREGNMR 264
           KK++LKAD+RIYNMIDVLREGNMR
Sbjct: 324 KKIRLKADQRIYNMIDVLREGNMR 347

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 3EC: .EC: 1EC: .EC: 2EC: 6
>sp|Q8LB01|DAPB2_ARATH 4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic OS=Arabidopsis thaliana GN=DAPB2 PE=2 SV=1 Back     alignment and function description
>sp|Q67W29|DAPB1_ORYSJ Probable 4-hydroxy-tetrahydrodipicolinate reductase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=DAPB1 PE=2 SV=1 Back     alignment and function description
>sp|Q10P67|DAPB2_ORYSJ Probable 4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=DAPB2 PE=2 SV=1 Back     alignment and function description
>sp|Q2NHW0|DAPB_METST 4-hydroxy-tetrahydrodipicolinate reductase OS=Methanosphaera stadtmanae (strain DSM 3091) GN=dapB PE=3 SV=1 Back     alignment and function description
>sp|C6BTW9|DAPB_DESAD 4-hydroxy-tetrahydrodipicolinate reductase OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=dapB PE=3 SV=1 Back     alignment and function description
>sp|Q1MRS7|DAPB_LAWIP 4-hydroxy-tetrahydrodipicolinate reductase OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=dapB PE=3 SV=1 Back     alignment and function description
>sp|Q8THP0|DAPB_METAC 4-hydroxy-tetrahydrodipicolinate reductase OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=dapB PE=3 SV=1 Back     alignment and function description
>sp|A9AB21|DAPB_METM6 4-hydroxy-tetrahydrodipicolinate reductase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=dapB PE=3 SV=1 Back     alignment and function description
>sp|Q57865|DAPB_METJA 4-hydroxy-tetrahydrodipicolinate reductase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=dapB PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query264
255585299354 dihydrodipicolinate reductase, putative 1.0 0.745 0.829 1e-130
297820840349 dihydrodipicolinate reductase family pro 1.0 0.756 0.818 1e-130
18406430347 dihydrodipicolinate reductase 1 [Arabido 1.0 0.760 0.821 1e-130
297828127347 dihydrodipicolinate reductase family pro 1.0 0.760 0.818 1e-129
363807337344 uncharacterized protein LOC100807997 [Gl 1.0 0.767 0.837 1e-129
18411368349 dihydrodipicolinate reductase 2 [Arabido 1.0 0.756 0.818 1e-129
449444040332 PREDICTED: dihydrodipicolinate reductase 1.0 0.795 0.829 1e-129
42572737343 dihydrodipicolinate reductase 2 [Arabido 1.0 0.769 0.818 1e-129
449502920362 PREDICTED: dihydrodipicolinate reductase 1.0 0.729 0.829 1e-129
388496612345 unknown [Medicago truncatula] 1.0 0.765 0.833 1e-129
>gi|255585299|ref|XP_002533348.1| dihydrodipicolinate reductase, putative [Ricinus communis] gi|223526813|gb|EEF29033.1| dihydrodipicolinate reductase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 219/264 (82%), Positives = 251/264 (95%)

Query: 1   MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNM 60
           MGKAVIKAAD+AGL+++PVSFG+ EESG  V+VCGK+I+++G S+RE VLAS+ +++PN+
Sbjct: 91  MGKAVIKAADSAGLQILPVSFGSPEESGITVQVCGKDIKIYGPSEREGVLASICNEHPNL 150

Query: 61  IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVA 120
           IVVDYTVPAAVNGNA+LY KVGVPFVMGTTGGDR  L++T+E+S +YAVISPQMGKQVVA
Sbjct: 151 IVVDYTVPAAVNGNADLYCKVGVPFVMGTTGGDRDLLYKTVEDSKIYAVISPQMGKQVVA 210

Query: 121 FLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDTSGTAKAVISCFQKLGVSFDMDQIQMI 180
           FLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLD SGTAKAVISCFQKLGVSFDMD++QMI
Sbjct: 211 FLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDISGTAKAVISCFQKLGVSFDMDKVQMI 270

Query: 181 RDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQTVSFEFQHNVCGRSIYAEGTVDAVLFLS 240
           RDP+QQ+EMVGVPEEHL GHAFHMYHLTSPD+TVSFEFQHNVCGRSIYAEGTVDAV+FL+
Sbjct: 271 RDPRQQIEMVGVPEEHLAGHAFHMYHLTSPDETVSFEFQHNVCGRSIYAEGTVDAVIFLA 330

Query: 241 KKVQLKADKRIYNMIDVLREGNMR 264
           KK+Q +ADKRIY+MIDVLREGNMR
Sbjct: 331 KKIQSRADKRIYSMIDVLREGNMR 354

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297820840|ref|XP_002878303.1| dihydrodipicolinate reductase family protein [Arabidopsis lyrata subsp. lyrata] gi|297324141|gb|EFH54562.1| dihydrodipicolinate reductase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18406430|ref|NP_566006.1| dihydrodipicolinate reductase 1 [Arabidopsis thaliana] gi|75223205|sp|O80574.2|DAPB1_ARATH RecName: Full=4-hydroxy-tetrahydrodipicolinate reductase 1, chloroplastic; Short=HTPA reductase 1; Flags: Precursor gi|20197071|gb|AAC23412.2| expressed protein [Arabidopsis thaliana] gi|21536558|gb|AAM60890.1| unknown [Arabidopsis thaliana] gi|26452703|dbj|BAC43434.1| unknown protein [Arabidopsis thaliana] gi|30793829|gb|AAP40367.1| unknown protein [Arabidopsis thaliana] gi|330255270|gb|AEC10364.1| dihydrodipicolinate reductase 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297828127|ref|XP_002881946.1| dihydrodipicolinate reductase family protein [Arabidopsis lyrata subsp. lyrata] gi|297327785|gb|EFH58205.1| dihydrodipicolinate reductase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|363807337|ref|NP_001242117.1| uncharacterized protein LOC100807997 [Glycine max] gi|255671801|gb|ACU26533.1| dihydrodipicolinate reductase [Glycine max] Back     alignment and taxonomy information
>gi|18411368|ref|NP_567088.1| dihydrodipicolinate reductase 2 [Arabidopsis thaliana] gi|75245889|sp|Q8LB01.1|DAPB2_ARATH RecName: Full=4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic; Short=HTPA reductase 2; Flags: Precursor gi|21593099|gb|AAM65048.1| unknown [Arabidopsis thaliana] gi|111074490|gb|ABH04618.1| At3g59890 [Arabidopsis thaliana] gi|332646461|gb|AEE79982.1| dihydrodipicolinate reductase 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449444040|ref|XP_004139783.1| PREDICTED: dihydrodipicolinate reductase 2, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|42572737|ref|NP_974464.1| dihydrodipicolinate reductase 2 [Arabidopsis thaliana] gi|332646460|gb|AEE79981.1| dihydrodipicolinate reductase 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449502920|ref|XP_004161780.1| PREDICTED: dihydrodipicolinate reductase 2, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|388496612|gb|AFK36372.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query264
TAIR|locus:2051854347 AT2G44040 [Arabidopsis thalian 1.0 0.760 0.821 8.8e-118
TAIR|locus:2080482349 AT3G59890 [Arabidopsis thalian 1.0 0.756 0.818 3e-117
TIGR_CMR|CJE_0190242 CJE_0190 "dihydrodipicolinate 0.833 0.909 0.226 3.8e-08
TIGR_CMR|CBU_1709239 CBU_1709 "dihydrodipicolinate 0.746 0.824 0.240 2.4e-05
TAIR|locus:2051854 AT2G44040 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1160 (413.4 bits), Expect = 8.8e-118, P = 8.8e-118
 Identities = 217/264 (82%), Positives = 248/264 (93%)

Query:     1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNM 60
             MGKAVIKAAD+AG+ +VP+SFG+  E GQ+VEVCGKEI VHG ++RE VL+SVF+K+P +
Sbjct:    84 MGKAVIKAADSAGVNIVPISFGSAGEDGQRVEVCGKEITVHGPTEREKVLSSVFEKHPEL 143

Query:    61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVA 120
             IVVDYT+P+AVN NAELYSKVGVPFVMGTTGGDR +L+ET+E + +YAVISPQMGKQVVA
Sbjct:   144 IVVDYTIPSAVNDNAELYSKVGVPFVMGTTGGDRNKLYETVEEAKIYAVISPQMGKQVVA 203

Query:   121 FLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDTSGTAKAVISCFQKLGVSFDMDQIQMI 180
             FLAAMEIMAEQFPGAFSGYSL V+ESHQA KLD SGTAKAVISCFQ+LGVS+DMDQIQ+I
Sbjct:   204 FLAAMEIMAEQFPGAFSGYSLDVMESHQASKLDASGTAKAVISCFQELGVSYDMDQIQLI 263

Query:   181 RDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQTVSFEFQHNVCGRSIYAEGTVDAVLFLS 240
             RDPKQQ+EMVGVPEEH+ GHAFH+YHLTSPD+TVSFEFQHNVCGRSIYAEGTVDAVLFL+
Sbjct:   264 RDPKQQVEMVGVPEEHISGHAFHLYHLTSPDETVSFEFQHNVCGRSIYAEGTVDAVLFLA 323

Query:   241 KKVQLKADKRIYNMIDVLREGNMR 264
             KK++LKAD+RIYNMIDVLREGNMR
Sbjct:   324 KKIRLKADQRIYNMIDVLREGNMR 347
GO:0000166 "nucleotide binding" evidence=IEA
GO:0008839 "4-hydroxy-tetrahydrodipicolinate reductase" evidence=IEA;IGI;ISS
GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM;IEA;IDA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0070402 "NADPH binding" evidence=IEA
GO:0009570 "chloroplast stroma" evidence=IDA
TAIR|locus:2080482 AT3G59890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_0190 CJE_0190 "dihydrodipicolinate reductase" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1709 CBU_1709 "dihydrodipicolinate reductase" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O80574DAPB1_ARATH1, ., 3, ., 1, ., 2, 60.82191.00.7608yesno
Q67W29DAPB1_ORYSJ1, ., 3, ., 1, ., 2, 60.73861.00.7696yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.3.10.976
3rd Layer1.3.1.260.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh2_kg.5__2445__AT3G59890.1
annotation not avaliable (349 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
fgenesh2_kg.5__2554__AT3G60880.2
annotation not avaliable (365 aa)
•    •• 0.702
fgenesh2_kg.4__2741__AT2G45440.1
annotation not avaliable (365 aa)
•    •• 0.697
scaffold_502452.1
annotation not avaliable (362 aa)
•     • 0.576
fgenesh2_kg.8__1097__AT5G52100.1
annotation not avaliable (298 aa)
     •• 0.490

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query264
PLN02775286 PLN02775, PLN02775, Probable dihydrodipicolinate r 0.0
TIGR02130275 TIGR02130, dapB_plant, dihydrodipicolinate reducta 1e-159
pfam01113122 pfam01113, DapB_N, Dihydrodipicolinate reductase, 3e-15
PRK00048257 PRK00048, PRK00048, dihydrodipicolinate reductase; 4e-15
COG0289266 COG0289, DapB, Dihydrodipicolinate reductase [Amin 7e-15
TIGR00036266 TIGR00036, dapB, dihydrodipicolinate reductase 2e-14
>gnl|CDD|178374 PLN02775, PLN02775, Probable dihydrodipicolinate reductase Back     alignment and domain information 
 Score =  501 bits (1293), Expect = 0.0
 Identities = 204/264 (77%), Positives = 228/264 (86%)

Query: 1   MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNM 60
           MG AV +AA +AGL+LVPVSF      G  VEVCG E+++ G S+RE+VL+SV  +YPN+
Sbjct: 23  MGHAVAEAAVSAGLQLVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVKAEYPNL 82

Query: 61  IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVA 120
           IVVDYT+P AVN NAELY K G+PFVMGTTGGDR RL + +E S VYAVI+PQMGKQVVA
Sbjct: 83  IVVDYTLPDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVEESGVYAVIAPQMGKQVVA 142

Query: 121 FLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDTSGTAKAVISCFQKLGVSFDMDQIQMI 180
           F AAMEIMAEQFPGAFSGY+L+V+ESHQA KLDTSGTAKAVIS F+KLGVSFDMDQI++I
Sbjct: 143 FQAAMEIMAEQFPGAFSGYTLEVVESHQATKLDTSGTAKAVISSFRKLGVSFDMDQIELI 202

Query: 181 RDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQTVSFEFQHNVCGRSIYAEGTVDAVLFLS 240
           RDPKQQLE VGVPEEHL GHAFH Y LTSPD TVSFEFQHNVCGRSIYAEGTVDAVLFL+
Sbjct: 203 RDPKQQLEGVGVPEEHLNGHAFHTYRLTSPDGTVSFEFQHNVCGRSIYAEGTVDAVLFLA 262

Query: 241 KKVQLKADKRIYNMIDVLREGNMR 264
           KK+   ADKRIYNMIDVLREGNMR
Sbjct: 263 KKIAEGADKRIYNMIDVLREGNMR 286

Length = 286
>gnl|CDD|131185 TIGR02130, dapB_plant, dihydrodipicolinate reductase Back     alignment and domain information
>gnl|CDD|216304 pfam01113, DapB_N, Dihydrodipicolinate reductase, N-terminus Back     alignment and domain information
>gnl|CDD|234595 PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional Back     alignment and domain information
>gnl|CDD|223366 COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|129147 TIGR00036, dapB, dihydrodipicolinate reductase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 264
TIGR02130275 dapB_plant dihydrodipicolinate reductase. This nar 100.0
PLN02775286 Probable dihydrodipicolinate reductase 100.0
COG0289266 DapB Dihydrodipicolinate reductase [Amino acid tra 100.0
TIGR00036266 dapB dihydrodipicolinate reductase. 100.0
PRK00048257 dihydrodipicolinate reductase; Provisional 100.0
PF05173132 DapB_C: Dihydrodipicolinate reductase, C-terminus; 100.0
PF01113124 DapB_N: Dihydrodipicolinate reductase, N-terminus; 99.91
PRK08374336 homoserine dehydrogenase; Provisional 98.16
PRK13303265 L-aspartate dehydrogenase; Provisional 98.1
PF03447117 NAD_binding_3: Homoserine dehydrogenase, NAD bindi 97.24
PRK04207341 glyceraldehyde-3-phosphate dehydrogenase; Provisio 97.03
PRK13304265 L-aspartate dehydrogenase; Reviewed 96.86
PRK06270341 homoserine dehydrogenase; Provisional 96.42
PRK13301267 putative L-aspartate dehydrogenase; Provisional 96.08
PRK13302271 putative L-aspartate dehydrogenase; Provisional 95.95
PF13380116 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 94.67
COG1712255 Predicted dinucleotide-utilizing enzyme [General f 94.55
TIGR01921324 DAP-DH diaminopimelate dehydrogenase. This model r 94.24
TIGR01019286 sucCoAalpha succinyl-CoA synthetase, alpha subunit 94.12
PLN00125300 Succinyl-CoA ligase [GDP-forming] subunit alpha 93.08
TIGR03855229 NAD_NadX aspartate dehydrogenase. Members of this 92.95
COG3804350 Uncharacterized conserved protein related to dihyd 92.89
PRK05678291 succinyl-CoA synthetase subunit alpha; Validated 92.51
PF01408120 GFO_IDH_MocA: Oxidoreductase family, NAD-binding R 92.44
PRK06349 426 homoserine dehydrogenase; Provisional 91.77
COG1748 389 LYS9 Saccharopine dehydrogenase and related protei 90.97
PTZ00187317 succinyl-CoA synthetase alpha subunit; Provisional 90.59
PF03435 386 Saccharop_dh: Saccharopine dehydrogenase ; InterPr 90.57
PRK08300302 acetaldehyde dehydrogenase; Validated 89.92
TIGR00715256 precor6x_red precorrin-6x reductase. This enzyme w 89.89
PF0262996 CoA_binding: CoA binding domain; InterPro: IPR0037 89.55
PF00107130 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: 88.85
TIGR03215285 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati 86.9
PRK08057248 cobalt-precorrin-6x reductase; Reviewed 86.8
PLN02819 1042 lysine-ketoglutarate reductase/saccharopine dehydr 86.67
TIGR03450351 mycothiol_INO1 inositol 1-phosphate synthase, Acti 86.39
PRK11579346 putative oxidoreductase; Provisional 85.47
PF13407257 Peripla_BP_4: Periplasmic binding protein domain; 85.28
PF01118121 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi 84.87
COG0074293 SucD Succinyl-CoA synthetase, alpha subunit [Energ 84.66
PF02593217 dTMP_synthase: Thymidylate synthase; InterPro: IPR 84.31
PRK06392326 homoserine dehydrogenase; Provisional 84.17
PF02571249 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: 82.15
TIGR02717 447 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP 82.12
PRK05472213 redox-sensing transcriptional repressor Rex; Provi 81.99
PF13460183 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X 81.68
PRK08955334 glyceraldehyde-3-phosphate dehydrogenase; Validate 81.2
cd06305273 PBP1_methylthioribose_binding_like Methylthioribos 81.18
PF00072112 Response_reg: Response regulator receiver domain; 81.12
COG2099257 CobK Precorrin-6x reductase [Coenzyme metabolism] 80.93
cd02069213 methionine_synthase_B12_BD B12 binding domain of m 80.13
>TIGR02130 dapB_plant dihydrodipicolinate reductase Back     alignment and domain information 
Probab=100.00  E-value=1.3e-74  Score=523.74  Aligned_cols=262  Identities=65%  Similarity=1.041  Sum_probs=234.7

Q ss_pred             ChHHHHHHHHhCCCeEEEE-EcCCCccccccc-cccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHH
Q 024671            1 MGKAVIKAADAAGLELVPV-SFGTEEESGQKV-EVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELY   78 (264)
Q Consensus         1 MG~~i~~~~~~~~~eLv~~-~~~~~~~~g~~~-~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~   78 (264)
                      |||++++++.++||+||++ +++.  ..+.+. .+.+.++++.+++|+...|+++.+..+|+|+||||+|+++++|+++|
T Consensus        12 MG~~v~~av~~~~~~Lv~~~~~~~--~~~~~~~~~~g~~v~v~~~~~~~~~l~~~~~~~~d~VvIDFT~P~~~~~n~~~~   89 (275)
T TIGR02130        12 MGKAVAEAADAAGLEIVPTSFGGE--EEAENEAEVAGKEILLHGPSEREARIGEVFAKYPELICIDYTHPSAVNDNAAFY   89 (275)
T ss_pred             HHHHHHHHHhcCCCEEEeeEcccc--ccccchhhhcccceeeeccccccccHHHHHhhcCCEEEEECCChHHHHHHHHHH
Confidence            9999999998899999998 5432  233343 34445788877788777777766555886799999999999999999


Q ss_pred             HhcCCCeEEecCCCCHHHHHHHHHccCCcEEEccchhHHHHHHHHHHHHHHHhcCCCCCCCCEEEEeecCCCCCCCcHHH
Q 024671           79 SKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDTSGTA  158 (264)
Q Consensus        79 ~~~g~plViGTTG~~~~~~~~l~~~~~~~~v~s~NfSlGv~ll~~~~~~aa~~l~~~~~~~dieI~E~HH~~K~DaSGTA  158 (264)
                      .++|+|+|+|||||++++++++++++++|+|||||||+|+|+|++++++++++|+++|++||+||+|+||++|+|+||||
T Consensus        90 ~~~gv~~ViGTTG~~~~~~~~l~~~~~i~~l~apNfSiGv~ll~~~~~~aA~~~~~~f~~ydvEIiE~HH~~K~DaSGTA  169 (275)
T TIGR02130        90 GKHGIPFVMGTTGGDREALAKLVADAKHPAVIAPNMAKQIVAFLAAIEFLAEEFPGAFAGYKLEVMESHQASKADASGTA  169 (275)
T ss_pred             HHCCCCEEEcCCCCCHHHHHHHHHhcCCCEEEECcccHHHHHHHHHHHHHHHhhccccCCCCEEEEEcCCCCCCCCCHHH
Confidence            99999999999999999999999988899999999999999999999999999998889999999999999999999999


Q ss_pred             HHHHHHHHhcCCccCcchhhhccCcccccccccccCCCcCcceeEEEEEcCCCceEEEEEEEEecCcccchHHHHHHHHH
Q 024671          159 KAVISCFQKLGVSFDMDQIQMIRDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQTVSFEFQHNVCGRSIYAEGTVDAVLF  238 (264)
Q Consensus       159 l~l~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~r~g~i~gha~H~v~f~~~~E~i~lei~H~a~sR~~FA~GAl~Aa~~  238 (264)
                      ++|++.+++++..++++++...|+++.+++++++|++.+.||++|+|+|.+++|+|.|||+|+|+||++||.||++||+|
T Consensus       170 ~~l~~~i~~~~~~~~~~~~~~~R~~~~~igi~siR~~~vgGh~~Htv~f~s~~e~i~iel~H~A~sR~~FA~GAl~AA~w  249 (275)
T TIGR02130       170 KAVIGCFQKLGFDYDMDDIEKIRDEKEQIERMGVPEEHLGGHAFHLYHLDSADGTVHFEFQHNVCGRKIYAEGTVDAVLF  249 (275)
T ss_pred             HHHHHHHHHhCCccCcccccccCCCCCccceEEecCcccCCCccEEEEEecCCCeEEEEEEEEECcHHHHHHHHHHHHHH
Confidence            99999987777667777777778776579999999988888999999999999996669999999999999999999999


Q ss_pred             HhhcccccCCCceeehhHHhhcCCCC
Q 024671          239 LSKKVQLKADKRIYNMIDVLREGNMR  264 (264)
Q Consensus       239 l~~k~~~~~~~G~Y~m~dvl~~~~~~  264 (264)
                      |.+|+++.++||+|+|+|||++++||
T Consensus       250 L~~k~~~~~~~GlY~m~DvL~~~~~~  275 (275)
T TIGR02130       250 LADKIIAAAEAKIFNMIDVLREGKMR  275 (275)
T ss_pred             HhcccccCCCCCccCHHHHHhhcCCC
Confidence            99998888889999999999999997

This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
>PLN02775 Probable dihydrodipicolinate reductase Back     alignment and domain information
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00036 dapB dihydrodipicolinate reductase Back     alignment and domain information
>PRK00048 dihydrodipicolinate reductase; Provisional Back     alignment and domain information
>PF05173 DapB_C: Dihydrodipicolinate reductase, C-terminus; InterPro: IPR022663 This entry represents the C-terminal region of Dihydrodipicolinate reductase Back     alignment and domain information
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] Back     alignment and domain information
>PRK08374 homoserine dehydrogenase; Provisional Back     alignment and domain information
>PRK13303 L-aspartate dehydrogenase; Provisional Back     alignment and domain information
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway Back     alignment and domain information
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional Back     alignment and domain information
>PRK13304 L-aspartate dehydrogenase; Reviewed Back     alignment and domain information
>PRK06270 homoserine dehydrogenase; Provisional Back     alignment and domain information
>PRK13301 putative L-aspartate dehydrogenase; Provisional Back     alignment and domain information
>PRK13302 putative L-aspartate dehydrogenase; Provisional Back     alignment and domain information
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A Back     alignment and domain information
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] Back     alignment and domain information
>TIGR01921 DAP-DH diaminopimelate dehydrogenase Back     alignment and domain information
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit Back     alignment and domain information
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha Back     alignment and domain information
>TIGR03855 NAD_NadX aspartate dehydrogenase Back     alignment and domain information
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown] Back     alignment and domain information
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated Back     alignment and domain information
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot Back     alignment and domain information
>PRK06349 homoserine dehydrogenase; Provisional Back     alignment and domain information
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] Back     alignment and domain information
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional Back     alignment and domain information
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase Back     alignment and domain information
>PRK08300 acetaldehyde dehydrogenase; Validated Back     alignment and domain information
>TIGR00715 precor6x_red precorrin-6x reductase Back     alignment and domain information
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases Back     alignment and domain information
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 Back     alignment and domain information
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) Back     alignment and domain information
>PRK08057 cobalt-precorrin-6x reductase; Reviewed Back     alignment and domain information
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase Back     alignment and domain information
>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type Back     alignment and domain information
>PRK11579 putative oxidoreductase; Provisional Back     alignment and domain information
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A Back     alignment and domain information
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate Back     alignment and domain information
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion] Back     alignment and domain information
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function Back     alignment and domain information
>PRK06392 homoserine dehydrogenase; Provisional Back     alignment and domain information
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt Back     alignment and domain information
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain Back     alignment and domain information
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional Back     alignment and domain information
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B Back     alignment and domain information
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated Back     alignment and domain information
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily Back     alignment and domain information
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] Back     alignment and domain information
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism] Back     alignment and domain information
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query264
4f3y_A272 DHPR, dihydrodipicolinate reductase; structural ge 4e-16
1p9l_A245 Dihydrodipicolinate reductase; oxidoreductase, lys 6e-16
3qy9_A243 DHPR, dihydrodipicolinate reductase; rossmann fold 7e-16
1dih_A273 Dihydrodipicolinate reductase; oxidoreductase; HET 8e-15
1vm6_A228 DHPR, dihydrodipicolinate reductase; TM1520, struc 5e-14
3ijp_A288 DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, 1e-13
2dc1_A236 L-aspartate dehydrogenase; NAD, oxidoreductase; HE 5e-04
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} Length = 272 Back     alignment and structure
 Score = 74.9 bits (185), Expect = 4e-16
 Identities = 71/292 (24%), Positives = 109/292 (37%), Gaps = 75/292 (25%)

Query: 1   MGKAVIKAADAA-GLELVPVSFGTEEESGQKV-----EVCGKEIQVHGLSDRESVLASVF 54
           MG+ +I+A  AA    LV      +     ++        GK+  V    D E V A   
Sbjct: 19  MGRMLIEAVLAAPDATLV---GALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAE-A 74

Query: 55  DKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTG---GDRVRLHETIENSNVYAVIS 111
           D      ++D+T+P     + +   +  V  V+GTTG     + +L    E   +  V S
Sbjct: 75  D-----YLIDFTLPEGTLVHLDAALRHDVKLVIGTTGFSEPQKAQLRAAGEKIAL--VFS 127

Query: 112 PQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTAKA---VISCFQK 167
             M   V   +  +E  A+QF     GY ++++E+H   K+D  SGTA      I+    
Sbjct: 128 ANMSVGVNVTMKLLEFAAKQFA---QGYDIEIIEAHHRHKVDAPSGTALMMGETIA--AA 182

Query: 168 LGVSFDM------DQIQMIRDPKQQLEMVG--------VPEEHLPGHAFHMYHLTSPDQT 213
            G S D         +   RDP      +G        +  +H                T
Sbjct: 183 TGRSLDDCAVYGRHGVTGERDPST----IGFSAIRGGDIVGDH----------------T 222

Query: 214 VSF-------EFQHNVCGRSIYAEGTVDAVLFLSKKVQLKADKRIYNMIDVL 258
           V F       E  H    R  YA+G + A  FL+ +     D   ++M DVL
Sbjct: 223 VLFAGIGERIEITHKSASRVSYAQGALRAARFLAGR-----DAGFFDMQDVL 269
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* Length = 245 Back     alignment and structure
>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} Length = 243 Back     alignment and structure
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* Length = 273 Back     alignment and structure
>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 Length = 228 Back     alignment and structure
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} Length = 288 Back     alignment and structure
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} Length = 236 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query264
3ijp_A288 DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, 100.0
1vm6_A228 DHPR, dihydrodipicolinate reductase; TM1520, struc 100.0
4f3y_A272 DHPR, dihydrodipicolinate reductase; structural ge 100.0
3qy9_A243 DHPR, dihydrodipicolinate reductase; rossmann fold 100.0
1dih_A273 Dihydrodipicolinate reductase; oxidoreductase; HET 100.0
1p9l_A245 Dihydrodipicolinate reductase; oxidoreductase, lys 100.0
1f06_A320 MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH 99.0
2yv2_A297 Succinyl-COA synthetase alpha chain; COA-binding d 98.85
1oi7_A288 Succinyl-COA synthetase alpha chain; SCS, ligase, 98.85
2yv1_A294 Succinyl-COA ligase [ADP-forming] subunit alpha; C 98.83
2nu8_A288 Succinyl-COA ligase [ADP-forming] subunit alpha; c 98.43
2dc1_A236 L-aspartate dehydrogenase; NAD, oxidoreductase; HE 98.18
3mwd_B334 ATP-citrate synthase; ATP-grAsp, phosphohistidine, 97.97
2fp4_A305 Succinyl-COA ligase [GDP-forming] alpha-chain, mit 97.31
3bio_A304 Oxidoreductase, GFO/IDH/MOCA family; structural ge 97.3
3ff4_A122 Uncharacterized protein; structural genomics, PSI- 97.1
3upl_A 446 Oxidoreductase; rossmann fold, NADPH binding; 1.50 96.71
1j5p_A253 Aspartate dehydrogenase; TM1643, structural genomi 96.61
2d59_A144 Hypothetical protein PH1109; COA binding, structur 96.49
3ing_A325 Homoserine dehydrogenase; NP_394635.1, structural 96.44
3e9m_A330 Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, 96.41
3euw_A344 MYO-inositol dehydrogenase; protein structure init 96.37
3c1a_A315 Putative oxidoreductase; ZP_00056571.1, oxidoreduc 96.37
3pff_A829 ATP-citrate synthase; phosphohistidine, organic ac 96.32
3cea_A346 MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore 96.2
1ydw_A362 AX110P-like protein; structural genomics, protein 96.16
4hkt_A331 Inositol 2-dehydrogenase; structural genomics, nys 96.12
1iuk_A140 Hypothetical protein TT1466; structural genomics, 96.08
3evn_A329 Oxidoreductase, GFO/IDH/MOCA family; structural ge 96.03
3do5_A327 HOM, homoserine dehydrogenase; NP_069768.1, putati 95.95
1tlt_A319 Putative oxidoreductase (virulence factor MVIM HO; 95.77
3kux_A352 Putative oxidoreductase; oxidoreductase family, cs 95.75
1y81_A138 Conserved hypothetical protein; hyperthermophIle, 95.65
2ho3_A325 Oxidoreductase, GFO/IDH/MOCA family; streptococcus 95.62
2glx_A332 1,5-anhydro-D-fructose reductase; NADP(H) dependen 95.57
3q2i_A354 Dehydrogenase; rossmann fold, UDP-sugar binding, N 95.47
3db2_A354 Putative NADPH-dependent oxidoreductase; two domai 95.47
3fhl_A362 Putative oxidoreductase; NAD-binding domain, PSI-2 95.45
3rc1_A350 Sugar 3-ketoreductase; sugar biosynthesis, TDP bin 95.37
3ezy_A344 Dehydrogenase; structural genomics, unknown functi 95.31
4ina_A 405 Saccharopine dehydrogenase; structural genomics, P 95.26
3moi_A 387 Probable dehydrogenase; structural genomics, PSI2, 95.23
4ew6_A330 D-galactose-1-dehydrogenase protein; nysgrc, PSI-b 95.22
3e82_A364 Putative oxidoreductase; NAD, GFO/IDH/MOCA family, 95.18
1h6d_A433 Precursor form of glucose-fructose oxidoreductase; 95.17
2g0t_A350 Conserved hypothetical protein; structural genomic 94.95
3o9z_A312 Lipopolysaccaride biosynthesis protein WBPB; oxido 94.94
3mz0_A344 Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; 94.9
3e18_A359 Oxidoreductase; dehydrogenase, NAD-binding, struct 94.75
3gdo_A358 Uncharacterized oxidoreductase YVAA; structural ge 94.72
3f4l_A345 Putative oxidoreductase YHHX; structural genomics, 94.3
3i23_A349 Oxidoreductase, GFO/IDH/MOCA family; structural ge 94.26
3ec7_A357 Putative dehydrogenase; alpha-beta, structural gen 94.18
2duw_A145 Putative COA-binding protein; ligand binding prote 93.82
3mtj_A 444 Homoserine dehydrogenase; rossmann-fold, PSI, MCSG 93.74
3c8m_A331 Homoserine dehydrogenase; structural genomics, APC 93.43
2ixa_A 444 Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver 93.28
3oa2_A318 WBPB; oxidoreductase, sugar biosynthesis, dehydrog 93.27
3btv_A 438 Galactose/lactose metabolism regulatory protein GA 93.25
1b7g_O340 Protein (glyceraldehyde 3-phosphate dehydrogenase; 92.76
1zh8_A340 Oxidoreductase; TM0312, structural genomics, JO ce 92.75
3m2t_A359 Probable dehydrogenase; PSI, SGXNY, structural gen 92.59
3ip3_A337 Oxidoreductase, putative; structural genomics, PSI 92.03
1cf2_P337 Protein (glyceraldehyde-3-phosphate dehydrogenase) 92.01
3uuw_A308 Putative oxidoreductase with NAD(P)-binding rossm 91.95
3ic5_A118 Putative saccharopine dehydrogenase; structural ge 91.94
3u3x_A361 Oxidoreductase; structural genomics, PSI-biology, 91.93
3keo_A212 Redox-sensing transcriptional repressor REX; DNA b 91.9
3nkl_A141 UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo 91.75
3dty_A 398 Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram 91.25
2vt3_A215 REX, redox-sensing transcriptional repressor REX; 91.01
4had_A350 Probable oxidoreductase protein; structural genomi 90.12
2dt5_A211 AT-rich DNA-binding protein; REX, NADH, NAD, rossm 90.1
2nvw_A 479 Galactose/lactose metabolism regulatory protein GA 89.52
3ohs_X334 Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d 89.15
2czc_A334 Glyceraldehyde-3-phosphate dehydrogenase; glycolys 89.14
3v5n_A417 Oxidoreductase; structural genomics, PSI-biology, 88.73
3lua_A140 Response regulator receiver protein; two-component 87.99
3lte_A132 Response regulator; structural genomics, PSI, prot 87.88
1lc0_A294 Biliverdin reductase A; oxidoreductase, tetrapyrro 87.87
2p2s_A336 Putative oxidoreductase; YP_050235.1, structural g 87.84
2ejw_A332 HDH, homoserine dehydrogenase; NAD-dependent, oxid 87.52
3kto_A136 Response regulator receiver protein; PSI-II,struct 87.52
3abi_A365 Putative uncharacterized protein PH1688; L-lysine 87.01
2obn_A349 Hypothetical protein; structural genomics, joint c 86.32
1xea_A323 Oxidoreductase, GFO/IDH/MOCA family; structural ge 85.96
3gl9_A122 Response regulator; beta-sheet, surrounded by alph 85.19
2zay_A147 Response regulator receiver protein; structural ge 84.91
3t6k_A136 Response regulator receiver; flavodoxin-like, stru 84.75
2qxy_A142 Response regulator; regulation of transcription, N 84.67
3cnb_A143 DNA-binding response regulator, MERR family; signa 84.67
2z2v_A365 Hypothetical protein PH1688; L-lysine dehydrogenas 84.58
3gt7_A154 Sensor protein; structural genomics, signal receiv 84.48
3oqb_A383 Oxidoreductase; structural genomics, protein struc 84.42
2csu_A 457 457AA long hypothetical protein; structural genomi 84.21
3eod_A130 Protein HNR; response regulator, phosphoprotein, t 84.04
3d1l_A266 Putative NADP oxidoreductase BF3122; structural ge 83.94
3cg0_A140 Response regulator receiver modulated diguanylate 83.62
1dbw_A126 Transcriptional regulatory protein FIXJ; doubly wo 83.39
3f6p_A120 Transcriptional regulatory protein YYCF; unphospho 83.07
3kht_A144 Response regulator; PSI-II, 11023K, structural gen 82.81
3dmy_A 480 Protein FDRA; predicted actyl-COA synthetase, nysg 82.57
2yxb_A161 Coenzyme B12-dependent mutase; alpha/beta, structu 82.3
1srr_A124 SPO0F, sporulation response regulatory protein; as 82.22
2rjn_A154 Response regulator receiver:metal-dependent phosph 81.93
2pl1_A121 Transcriptional regulatory protein PHOP; CHEY-like 81.29
2qzj_A136 Two-component response regulator; 11017X, PSI-II, 81.28
1qkk_A155 DCTD, C4-dicarboxylate transport transcriptional r 80.99
1k66_A149 Phytochrome response regulator RCPB; CHEY homologu 80.3
3e5r_O337 PP38, glyceraldehyde-3-phosphate dehydrogenase, cy 80.29
3jte_A143 Response regulator receiver protein; structural ge 80.26
2ph5_A 480 Homospermidine synthase; alpha-beta protein, struc 80.06
3cfy_A137 Putative LUXO repressor protein; structural genomi 80.06
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} Back     alignment and structure
Probab=100.00  E-value=4.1e-67  Score=478.89  Aligned_cols=239  Identities=20%  Similarity=0.272  Sum_probs=208.4

Q ss_pred             ChHHHHHHHH-hCCCeEEEEEcCCC-ccccccc----cccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHH
Q 024671            1 MGKAVIKAAD-AAGLELVPVSFGTE-EESGQKV----EVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGN   74 (264)
Q Consensus         1 MG~~i~~~~~-~~~~eLv~~~~~~~-~~~g~~~----~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~   74 (264)
                      |||.+++.+. +++++|+++++..+ ...|+|+    +....+++++  +|++++++     .+| |+||||.|+++.+|
T Consensus        33 MGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~--~dl~~ll~-----~aD-VvIDFT~p~a~~~~  104 (288)
T 3ijp_A           33 MGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRIT--DDPESAFS-----NTE-GILDFSQPQASVLY  104 (288)
T ss_dssp             HHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCB--SCHHHHTT-----SCS-EEEECSCHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceee--CCHHHHhc-----CCC-EEEEcCCHHHHHHH
Confidence            8999999998 78999999998643 3566665    2334467775  58777653     689 89999999999999


Q ss_pred             HHHHHhcCCCeEEecCCCCHHHHHHHHHccC-CcEEEccchhHHHHHHHHHHHHHHHhcCCCCCCCCEEEEeecCCCCCC
Q 024671           75 AELYSKVGVPFVMGTTGGDRVRLHETIENSN-VYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLD  153 (264)
Q Consensus        75 ~~~~~~~g~plViGTTG~~~~~~~~l~~~~~-~~~v~s~NfSlGv~ll~~~~~~aa~~l~~~~~~~dieI~E~HH~~K~D  153 (264)
                      +++|+++|+|+|+|||||+++++++|.++++ +|+|||||||+|+|+|++++++++++|+   ++||+||+|+||++|+|
T Consensus       105 ~~~~l~~Gv~vViGTTG~~~e~~~~L~~aa~~~~~~~a~N~SiGv~ll~~l~~~aa~~l~---~~~dieIiE~HH~~K~D  181 (288)
T 3ijp_A          105 ANYAAQKSLIHIIGTTGFSKTEEAQIADFAKYTTIVKSGNMSLGVNLLANLVKRAAKALD---DDFDIEIYEMHHANKVD  181 (288)
T ss_dssp             HHHHHHHTCEEEECCCCCCHHHHHHHHHHHTTSEEEECSCCCHHHHHHHHHHHHHHHHSC---TTSEEEEEEEECTTCCC
T ss_pred             HHHHHHcCCCEEEECCCCCHHHHHHHHHHhCcCCEEEECCCcHHHHHHHHHHHHHHHhcC---CCCCEEEEEccCCCCCC
Confidence            9999999999999999999988888887766 9999999999999999999999999997   68999999999999999


Q ss_pred             C-cHHHHHHHHHHH-hcCCcc------CcchhhhccCcccccccccccCCCcCcceeEEEEEcCCCceEEEEEEEEecCc
Q 024671          154 T-SGTAKAVISCFQ-KLGVSF------DMDQIQMIRDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQTVSFEFQHNVCGR  225 (264)
Q Consensus       154 a-SGTAl~l~~~i~-~~~~~~------~~~~~~~~r~~~~~~~~~~~r~g~i~gha~H~v~f~~~~E~i~lei~H~a~sR  225 (264)
                      | ||||++|++.+. .+++.+      +|+.....|++ ++++++++|+|+++|  +|+|+|++++|+|  ||+|+|+||
T Consensus       182 aPSGTA~~la~~i~~~~~~~~~~~~~~~r~g~~g~r~~-~~i~i~s~R~g~ivg--~h~V~f~~~~e~i--~i~H~a~sR  256 (288)
T 3ijp_A          182 SPSGTALLLGQAAAEGRNIMLKNVSVNGRSGHTGKREK-GTIGFACSRGGTVIG--DHSITFAGENERI--VLSHIAQER  256 (288)
T ss_dssp             SSCHHHHHHHHHHHHHTTSCHHHHEEECGGGCCSCCCT-TCEEEEEEECTTCCE--EEEEEEEETTEEE--EEEEEECCT
T ss_pred             CCCHHHHHHHHHHHHHhCCCcccccccccccccCCcCC-CCccEEEEECCCCCE--EEEEEecCCCcEE--EEEEEeCcH
Confidence            9 999999999884 455543      33343444543 468999999999999  9999999999997  999999999


Q ss_pred             ccchHHHHHHHHHHhhcccccCCCceeehhHHhhc
Q 024671          226 SIYAEGTVDAVLFLSKKVQLKADKRIYNMIDVLRE  260 (264)
Q Consensus       226 ~~FA~GAl~Aa~~l~~k~~~~~~~G~Y~m~dvl~~  260 (264)
                      ++||+||++||+|+.+|     +||+|+|+|||+.
T Consensus       257 ~~Fa~Ga~~Aa~~l~~~-----~~g~y~m~dvL~~  286 (288)
T 3ijp_A          257 SIFANGALKAALWAKNH-----ENGLYSMLDVLGL  286 (288)
T ss_dssp             HHHHHHHHHHHHHHTTC-----CSEEECHHHHHCC
T ss_pred             HHHHHHHHHHHHHHhcC-----CCcEEeHHHHhCc
Confidence            99999999999999999     9999999999975
>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 Back     alignment and structure
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} Back     alignment and structure
>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} Back     alignment and structure
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* Back     alignment and structure
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* Back     alignment and structure
>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* Back     alignment and structure
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} Back     alignment and structure
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 Back     alignment and structure
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} Back     alignment and structure
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* Back     alignment and structure
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} Back     alignment and structure
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B* Back     alignment and structure
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* Back     alignment and structure
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} Back     alignment and structure
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* Back     alignment and structure
>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* Back     alignment and structure
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* Back     alignment and structure
>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} Back     alignment and structure
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} Back     alignment and structure
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} Back     alignment and structure
>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} Back     alignment and structure
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens} Back     alignment and structure
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} Back     alignment and structure
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A Back     alignment and structure
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} Back     alignment and structure
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A Back     alignment and structure
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} Back     alignment and structure
>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} Back     alignment and structure
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 Back     alignment and structure
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} Back     alignment and structure
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 Back     alignment and structure
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} Back     alignment and structure
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* Back     alignment and structure
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} Back     alignment and structure
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} Back     alignment and structure
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* Back     alignment and structure
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} Back     alignment and structure
>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} Back     alignment and structure
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} Back     alignment and structure
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} Back     alignment and structure
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} Back     alignment and structure
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* Back     alignment and structure
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10 Back     alignment and structure
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* Back     alignment and structure
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* Back     alignment and structure
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} Back     alignment and structure
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A Back     alignment and structure
>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} Back     alignment and structure
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A Back     alignment and structure
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} Back     alignment and structure
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} Back     alignment and structure
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} Back     alignment and structure
>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* Back     alignment and structure
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* Back     alignment and structure
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} Back     alignment and structure
>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A Back     alignment and structure
>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 Back     alignment and structure
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 Back     alignment and structure
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} Back     alignment and structure
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} Back     alignment and structure
>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 Back     alignment and structure
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} Back     alignment and structure
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} Back     alignment and structure
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} Back     alignment and structure
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* Back     alignment and structure
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri} Back     alignment and structure
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} Back     alignment and structure
>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* Back     alignment and structure
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} Back     alignment and structure
>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* Back     alignment and structure
>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A Back     alignment and structure
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X Back     alignment and structure
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 Back     alignment and structure
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} Back     alignment and structure
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum} Back     alignment and structure
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri} Back     alignment and structure
>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* Back     alignment and structure
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} Back     alignment and structure
>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} Back     alignment and structure
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0 Back     alignment and structure
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} Back     alignment and structure
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis} Back     alignment and structure
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 Back     alignment and structure
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C Back     alignment and structure
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans} Back     alignment and structure
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0 Back     alignment and structure
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima} Back     alignment and structure
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea} Back     alignment and structure
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB} Back     alignment and structure
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} Back     alignment and structure
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 Back     alignment and structure
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12} Back     alignment and structure
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} Back     alignment and structure
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp} Back     alignment and structure
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A* Back     alignment and structure
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A Back     alignment and structure
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0 Back     alignment and structure
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli} Back     alignment and structure
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix} Back     alignment and structure
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E Back     alignment and structure
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis} Back     alignment and structure
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A Back     alignment and structure
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile} Back     alignment and structure
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A Back     alignment and structure
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1 Back     alignment and structure
>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O Back     alignment and structure
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405} Back     alignment and structure
>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} Back     alignment and structure
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 264
d1yl7a1135 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate re 1e-06
d1vm6a3128 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate red 3e-06
d1diha1162 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate re 2e-05
>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 135 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 44.7 bits (105), Expect = 1e-06
 Identities = 32/151 (21%), Positives = 54/151 (35%), Gaps = 31/151 (20%)

Query: 1   MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNM 60
           +G  +++A  AA                        ++ +    D    L+ + D     
Sbjct: 11  VGATMVRAVAAA-----------------------DDLTLSAELDAGDPLSLLTDGNTE- 46

Query: 61  IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHE----TIENSNVYAVISPQMGK 116
           +V+D+T P  V GN E     G+  V+GTTG    R  +     +   N   +I+P    
Sbjct: 47  VVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFTS 106

Query: 117 QVVAFLAAMEIMAEQFPGAFSGYSLQVLESH 147
            V   L A+  +AE+         L+ L   
Sbjct: 107 FVPGVLLAVRRIAER---PGLTVGLEPLLDL 134
>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} Length = 128 Back     information, alignment and structure
>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} Length = 162 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query264
d1yl7a1135 Dihydrodipicolinate reductase {Mycobacterium tuber 100.0
d1diha1162 Dihydrodipicolinate reductase {Escherichia coli [T 99.98
d1diha2110 Dihydrodipicolinate reductase {Escherichia coli [T 99.95
d1vm6a286 Dihydrodipicolinate reductase {Thermotoga maritima 99.95
d1yl7a2109 Dihydrodipicolinate reductase {Mycobacterium tuber 99.95
d1vm6a3128 Dihydrodipicolinate reductase {Thermotoga maritima 99.95
d1j5pa4132 Hypothetical protein TM1643 {Thermotoga maritima [ 98.06
d1f06a1170 Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb 96.9
d1y81a1116 Hypothetical protein PF0725 {Pyrococcus furiosus [ 95.94
d1iuka_136 Hypothetical protein TT1466 {Thermus thermophilus 95.35
d1ydwa1184 Probable oxidoreductase At4g09670 {Thale cress (Ar 94.97
d2dt5a2126 Transcriptional repressor Rex, C-terminal domain { 94.86
d1tlta1164 Virulence factor MviM {Escherichia coli [TaxId: 56 94.46
d2d59a1139 Hypothetical protein PH1109 {Pyrococcus horikoshii 94.19
d1b7go1178 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { 93.07
d1h6da1221 Glucose-fructose oxidoreductase, N-terminal domain 92.88
d1oi7a1121 Succinyl-CoA synthetase, alpha-chain, N-terminal ( 90.12
d2nu7a1119 Succinyl-CoA synthetase, alpha-chain, N-terminal ( 90.05
d2czca2172 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { 88.89
d1xhfa1121 Aerobic respiration control protein ArcA, N-termin 88.64
d3bula2156 Methionine synthase, C-terminal domain {Escherichi 88.07
d1xeaa1167 Putative oxidoreductase VCA1048 {Vibrio cholerae [ 87.73
d1euca1130 Succinyl-CoA synthetase, alpha-chain, N-terminal ( 87.72
d2csua1129 Acetate-CoA ligase alpha chain, AcdA, N-terminal d 86.53
d1zh8a1181 Hypothetical protein TM0312 {Thermotoga maritima [ 85.37
d2a9pa1117 DNA-binding response regulator MicA, N-terminal do 85.08
d1u0sy_118 CheY protein {Thermotoga maritima [TaxId: 2336]} 84.76
d7reqa2168 Methylmalonyl-CoA mutase alpha subunit, C-terminal 83.54
d1s8na_190 Probable two-component system transcriptional regu 82.92
d2pl1a1119 PhoP receiver domain {Escherichia coli [TaxId: 562 82.71
d1zh2a1119 Transcriptional regulatory protein KdpE, N-termina 82.37
d1dbwa_123 Transcriptional regulatory protein FixJ, receiver 82.29
d1cf2o1171 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { 81.81
>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.2e-35  Score=241.65  Aligned_cols=120  Identities=26%  Similarity=0.324  Sum_probs=103.4

Q ss_pred             ChHHHHHHHH-hCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHH
Q 024671            1 MGKAVIKAAD-AAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYS   79 (264)
Q Consensus         1 MG~~i~~~~~-~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~   79 (264)
                      |||+|++.+. +++++|+++++...                    ++    ....+.++| |+||||+|+++.+|+++|.
T Consensus        11 MG~~i~~~i~~~~~~~l~~~~d~~~--------------------~~----~~~~~~~~D-vvIDFS~p~~~~~~~~~~~   65 (135)
T d1yl7a1          11 VGATMVRAVAAADDLTLSAELDAGD--------------------PL----SLLTDGNTE-VVIDFTHPDVVMGNLEFLI   65 (135)
T ss_dssp             HHHHHHHHHHHSTTSEEEEEECTTC--------------------CT----HHHHTTTCS-EEEECCCTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCEEEEEEecCC--------------------ch----hhhccccCC-EEEEcccHHHHHHHHHHHH
Confidence            9999999987 78999999987432                    11    112234689 8999999999999999999


Q ss_pred             hcCCCeEEecCCCCHHHHHHHHH---cc-CCcEEEccchhHHHHHHHHHHHHHHHhcCCCCCCCCEEEEeecC
Q 024671           80 KVGVPFVMGTTGGDRVRLHETIE---NS-NVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQ  148 (264)
Q Consensus        80 ~~g~plViGTTG~~~~~~~~l~~---~~-~~~~v~s~NfSlGv~ll~~~~~~aa~~l~~~~~~~dieI~E~HH  148 (264)
                      ++|+|+|+|||||+++|++.+.+   ++ ++|++||||||+|||+++++++++++.+.   +.||+||+|.||
T Consensus        66 ~~~~~~ViGTTG~~~~~~~~l~~~~~~~~~ipil~apNfSlGvnll~~l~~~aa~~l~---~~~diEiIe~hH  135 (135)
T d1yl7a1          66 DNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFTSFVPGVLLAVRRIAERPG---LTVGLEPLLDLH  135 (135)
T ss_dssp             HTTCEEEECCCCCCHHHHHHHHHHHHSCTTCEEEECSCCGGGHHHHHHHHHHGGGSCE---EEESSGGGSCCC
T ss_pred             hcCCCEEEeccccchhHHHHHHHHHHhcCCCCEEEcCCccHHHHHHHHHHHHHHHhcc---ccCCeeehhhcC
Confidence            99999999999999988888765   34 49999999999999999999999999875   468999999999
>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1diha2 d.81.1.3 (A:131-240) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vm6a2 d.81.1.3 (A:97-182) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1yl7a2 d.81.1.3 (A:106-214) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} Back     information, alignment and structure
>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} Back     information, alignment and structure
>d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3bula2 c.23.6.1 (A:741-896) Methionine synthase, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Back     information, alignment and structure
>d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional regulator Rv1626 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]} Back     information, alignment and structure
>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} Back     information, alignment and structure